Citrus Sinensis ID: 010920

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------
Protein Sequence
MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNACRGTSQFLPSANNHQSAEAINANGWGNSANAESHNGWGAAARTEASCSGWMDEPKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESGEGPIRYPSVENSVADLHLPVLEDGVSASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHccccHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHccccccHHHHHHHccccccccccccccccccHHHHHcccHHHHHHHHHccccccccccccccHHHHHccccHHHHHHHHccccHHHHHHHHHHHccccccccccccccccHHHccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccEEEEcccHHHHHHHHHHHHHHHHcccccccccHHHEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccHHcccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHccccHHHHHHHHHHccccHcHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccEEEEEEcccccccccccEEEEEEEccHHcccccEHHHHHHcccccccccccccEEEEEEccccEEEEEcccccccHHHHHHHHHHHccccccccccccccHEEEEEHHccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEccccHHHHHHHHHHHHHccccccccHccHHHEEEEEEc
Coil and Loop (DISEMBL)
mgqslnsmnqhqqrqsKDELLYQWVIAGDVDAIRALRSQGaslewmdkegktpLIVACMDSGLINVAKTLIELGAninayrpakrglePTVRLLLSCGanalvrnddchtALGVARIKGHINVVRAIESHICYFCgwlrefygpsflEALAPQLMSRKIWVVVIpcgtanpskplrfelviypslqdvqPRAVIALWKAKidepkfhqpdpsltiyDQATKIRYKFasanegdkhQLQWLDNacrgtsqflpsannhqsaeainangwgnsanaeshngwgaaarteascsgwmdepkkedykgwgdeqakedyngwgasnsepvcgkredgqthntpapilqtstrisgkedyngwgvpnfepifkqsqdvqtlanpapfsqisnrnsssasaapsappipevesgegpirypsvensvadlhlpvledgvsasnvkddgsssscvicweapvegacvpcghmagcmSCLSeikakkgdcpvcrtkINQVIRLYTV
Flexible Loop (DISEMBL)
MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIdepkfhqpdpslTIYDQATKIRYKFASANEGDKHQLQWLDNACRGTSQFLPSANNHQSAEAINANGWGNSANAESHNGWGAAARTEASCSGWMDEPKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKRedgqthntpapilqtstrisgKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESGEGPIRYPSVENSVADLHLPVLEDGVSASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEikakkgdcpvcrtkinqvirlytv
Low Complexity Region (SEG)
MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNACRGTSQFLPSANNHQSAEAINANGWGNSANAESHNGWGAAARTEASCSGWMDEPKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNsssasaapsappipEVESGEGPIRYPSVENSVADLHLPVLEDGVSASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV
Disordered region (IsUnstruct)
*******************LLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNACRGT*********************************************************************************************************DYNGWGVPNFEPIF******************************************************************************SCVICWEAPVEGACV**************************************
Disordered Region (DISOPRED)
MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN*G*KHQLQWLDNACRGTSQFLPSAN***********************************************************************************************************************************************************************************************VICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV
Disordered Region (DISEMBL)
*****************DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNACRGTSQFLPSANNHQSAEAINANGWGNSANAESH**************GWMDEPKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQI*********************SGEGPIRYPSVENSVADLHLPVLEDGVSAS*********SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV
Disordered Region (DISPRO)
*****************DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNACRGTSQFLPSANNHQSAEAINANGWGNSANA***NGWGA*AR*EASC**W*DEPKKEDYKGWGDEQA**********************************************W***********************F*************************************************************SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNACRGTSQFLPSANNHQSAEAINANGWGNSANAESHNGWGAAARTEASCSGWMDEPKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESGEGPIRYPSVENSVADLHLPVLEDGVSASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	497	2.2.26 [Sep-21-2011]
Q7XI08	513	Probable E3 ubiquitin-pro	yes	no	0.909	0.881	0.435	1e-114
Q4FE47	462	Putative E3 ubiquitin-pro	no	no	0.476	0.512	0.555	8e-82
Q9FPH0	376	Putative E3 ubiquitin-pro	no	no	0.480	0.635	0.494	6e-68
Q9VCA8	4001	Ankyrin repeat and KH dom	yes	no	0.199	0.024	0.354	7e-10
Q8IWZ3	2542	Ankyrin repeat and KH dom	yes	no	0.245	0.047	0.300	2e-08
Q99NH0	2603	Ankyrin repeat domain-con	no	no	0.229	0.043	0.328	3e-08
O75179	2603	Ankyrin repeat domain-con	no	no	0.229	0.043	0.328	3e-08
Q84ME1	378	Probable E3 ubiquitin-pro	no	no	0.132	0.174	0.328	2e-07
Q9SAR5	342	Ankyrin repeat domain-con	no	no	0.217	0.315	0.313	3e-07
Q24746	747	Protein neuralized OS=Dro	N/A	no	0.130	0.087	0.402	5e-07

>sp|Q7XI08|XB34_ORYSJ Probable E3 ubiquitin-protein ligase XBOS34 OS=Oryza sativa subsp. japonica GN=XBOS34 PE=2 SV=1

 Score =  412 bits (1060), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 236/542 (43%), Positives = 311/542 (57%), Gaps = 90/542 (16%)

Query: 14  RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
           +QSK+EL+YQ V  G+ D IRALR+QGA LEW+DKEGKTPL+VA M   LINV + LIEL
Sbjct: 4   QQSKEELVYQQVNYGNADGIRALRAQGAGLEWIDKEGKTPLMVASMRPDLINVVQVLIEL 63

Query: 74  GANINAYRP-----------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 122
           GAN+NAYRP           AK+GLE TV LLLS GAN  + NDDCHTAL +AR KGH+N
Sbjct: 64  GANVNAYRPGSYCGTALHHAAKKGLEQTVHLLLSHGANPFITNDDCHTALDLAREKGHVN 123

Query: 123 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY 182
           VVRAIE  I  FCGW+RE YGP FLEA APQ ++RKIW V++P    N ++PL+ EL IY
Sbjct: 124 VVRAIEGRISLFCGWMRENYGPGFLEAFAPQFLTRKIWAVILPREARNQTRPLKLELTIY 183

Query: 183 PSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDN 242
           P LQ  +P+AVI LWK +++EPKF+Q +PS+TI+D+ T+ RYK     EGDK QLQW  +
Sbjct: 184 PELQASKPQAVIKLWKCQLEEPKFNQANPSVTIFDKGTRTRYKLLPVCEGDKQQLQWFYS 243

Query: 243 ACRGTSQF---------------------------LPSANNHQSAEAINANGWGNSANAE 275
           AC G  Q                             PS  + + A AINA+    SA AE
Sbjct: 244 ACCGIPQVASMVPAQPANAPLPNPSSASSLPSVISTPSKEDAELAMAINASIL--SAIAE 301

Query: 276 SHNGWGAAARTEASCSGWMDEPKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTH 335
                     T A+               WG+  +    NGWG  ++      +  GQ  
Sbjct: 302 GVPDVQPITTTTAT-------------NDWGNPPSN-SLNGWGPPDTS--APSKTSGQV- 344

Query: 336 NTPAPILQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAA 395
               P++ +S+       YNGW VP       QS      +  + F  +  + +  +   
Sbjct: 345 ----PVVTSSS-----STYNGWDVPGTS--SGQSSSKHNKSQNSTF--VVPQEALPSLPV 391

Query: 396 PSAPPIPEVESGEGPIRYPSVENSVADLHLPVLEDGVSASNVK------------DDGSS 443
           P+APP+      +GPI+YPS++++  D+ +P  + G + S+ K             D ++
Sbjct: 392 PTAPPLAVGTFYDGPIQYPSIDSTPVDVTMPSADGGTAVSSAKPAENEGDAKPAESDANA 451

Query: 444 S--------SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 495
           S        +CVIC +APVEGAC+PCGHMAGCMSCL +I++KK  CP+CR KINQ+IRLY
Sbjct: 452 SNSGNTPPGTCVICLDAPVEGACIPCGHMAGCMSCLKDIESKKWGCPICRAKINQIIRLY 511

Query: 496 TV 497
            V
Sbjct: 512 AV 513

Oryza sativa subsp. japonica (taxid: 39947)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q4FE47|XB35_ARATH Putative E3 ubiquitin-protein ligase XBAT35 OS=Arabidopsis thaliana GN=XBAT35 PE=2 SV=1

 Score =  305 bits (780), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 151/272 (55%), Positives = 184/272 (67%), Gaps = 35/272 (12%)

Query: 13  QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIE 72
           Q+QSK ELLYQ V  G+ + IRAL   G  LEWMD+EGKTPLI+ACM+S L +VAKTLIE
Sbjct: 3   QQQSKGELLYQQVSYGNSEGIRALHRDGGDLEWMDREGKTPLILACMNSELFDVAKTLIE 62

Query: 73  LGANINAYRP-----------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI 121
           LG+N+NAYRP           AKRGLE TV+LLLS GAN LV NDDC T L VAR+KG  
Sbjct: 63  LGSNVNAYRPGRHAGTPLHHAAKRGLENTVKLLLSHGANPLVLNDDCQTPLEVARVKGFS 122

Query: 122 NVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVI 181
           NVVRAIE HIC F GW+REFYGP+FL+  APQL+SR++WVV++P G+ NP+KP + ELV+
Sbjct: 123 NVVRAIEKHICLFSGWMREFYGPTFLDLFAPQLLSRRVWVVIVPTGSRNPTKPFKLELVV 182

Query: 182 YPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQAT--------------------- 220
           Y SLQD QPR V+ LWKA ++EPK  Q D S+ I D +T                     
Sbjct: 183 YASLQDAQPRTVMPLWKANLEEPKAKQSDTSVMIVDNSTIPSRRMKKRRVCASHGRRRPQ 242

Query: 221 ---KIRYKFASANEGDKHQLQWLDNACRGTSQ 249
              + R KFA + EGD  QL+W  +AC+G  Q
Sbjct: 243 VVRQTRLKFAPSTEGDSQQLKWFCDACKGIPQ 274

No E3 ubiquitin-protein ligase activity observed when associated with the E2 enzyme UBC8 in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FPH0|XB34_ARATH Putative E3 ubiquitin-protein ligase XBAT34 OS=Arabidopsis thaliana GN=XBAT34 PE=2 SV=1

 Score =  258 bits (660), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 136/275 (49%), Positives = 175/275 (63%), Gaps = 36/275 (13%)

Query: 11  HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTL 70
            QQ QSKDE+L+Q V   +V+ I++L  +GA LE +DK G+TPLI+AC +  L +VAKTL
Sbjct: 3   QQQSQSKDEMLFQEVSNNNVEGIKSLHHEGAGLEGVDKLGRTPLILACTNDDLYDVAKTL 62

Query: 71  IELGANINAYR-----------PAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG 119
           +ELG+N+NAYR            AKRGL  TV+LLLS GAN LV +DD  TAL VAR +G
Sbjct: 63  LELGSNVNAYRSGCNGGTPLHHAAKRGLVHTVKLLLSHGANPLVLDDDVKTALEVARDEG 122

Query: 120 HINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFEL 179
           + NVVRAIESHIC F G +RE+ G S L   APQL+SRK+WVVV+P G+ NP+KPL+ EL
Sbjct: 123 YSNVVRAIESHICLFSGCMREYSGSSLLNLFAPQLLSRKVWVVVVPTGSRNPTKPLKLEL 182

Query: 180 VIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQA-------------------- 219
           V+Y S+QD QPR VI LWKA ++EPK  + D S+ I D +                    
Sbjct: 183 VLYDSIQDAQPRMVIPLWKANLEEPKSFRCDDSVMIIDDSRSPKSMRQRRESGFISQARR 242

Query: 220 -----TKIRYKFASANEGDKHQLQWLDNACRGTSQ 249
                 +IR K A+  +GD  Q+ W   AC+G  Q
Sbjct: 243 WAQVDRQIRLKLAAEIKGDMKQMNWFSEACKGVPQ 277

No E3 ubiquitin-protein ligase activity observed when associated with the E2 enzyme UBC8 in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9VCA8|ANKHM_DROME Ankyrin repeat and KH domain-containing protein mask OS=Drosophila melanogaster GN=mask PE=1 SV=2

 Score = 65.9 bits (159), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 11/110 (10%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYR------ 81
           G VD ++ L   GA++E  ++ G TPL+ A   +G + VAK L+E GA IN +       
Sbjct: 663 GQVDVVKVLLKHGANVEEQNENGHTPLMEAA-SAGHVEVAKVLLEHGAGINTHSNEFKES 721

Query: 82  ----PAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
                  +G    VR LL  GA+   + D+ HTAL  A + GH+ V R +
Sbjct: 722 ALTLACYKGHLDMVRFLLQAGADQEHKTDEMHTALMEASMDGHVEVARLL 771

Mediator of receptor tyrosine kinase (RTK) signaling, and may act either downstream of MAPK or transduce signaling through a parallel branch of the RTK pathway.

Drosophila melanogaster (taxid: 7227)

>sp|Q8IWZ3|ANKH1_HUMAN Ankyrin repeat and KH domain-containing protein 1 OS=Homo sapiens GN=ANKHD1 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 11/133 (8%)

Query: 5   LNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLI 64
           L+  + + Q  + +  L      G VD ++ L ++GA++E  ++ G TPL+ A   +G +
Sbjct: 293 LHDADVNSQSATGNTALTYACAGGFVDIVKVLLNEGANIEDHNENGHTPLMEAA-SAGHV 351

Query: 65  NVAKTLIELGANINAYR----------PAKRGLEPTVRLLLSCGANALVRNDDCHTALGV 114
            VA+ L++ GA IN +              +G    VR LL  GA+   + D+ HTAL  
Sbjct: 352 EVARVLLDHGAGINTHSNEFKESALTLACYKGHLDMVRFLLEAGADQEHKTDEMHTALME 411

Query: 115 ARIKGHINVVRAI 127
           A + GH+ V R +
Sbjct: 412 ACMDGHVEVARLL 424

May play a role as a scaffolding protein that may be associated with the abnormal phenotype of leukemia cells. Isoform 2 may possess an antiapoptotic effect and protect cells during normal cell survival through its regulation of caspases.

Homo sapiens (taxid: 9606)

>sp|Q99NH0|ANR17_MOUSE Ankyrin repeat domain-containing protein 17 OS=Mus musculus GN=Ankrd17 PE=1 SV=2

 Score = 60.5 bits (145), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 11/125 (8%)

Query: 13  QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIE 72
           Q  + +  L      G VD ++ L   GAS+E  ++ G TPL+ A   +G + VA+ L+E
Sbjct: 326 QSSTGNTALTYACAGGYVDVVKVLLESGASIEDHNENGHTPLMEAG-SAGHVEVARLLLE 384

Query: 73  LGANINAYR----------PAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 122
            GA IN +              +G    VR LL  GA+   + D+ HTAL  A + GH+ 
Sbjct: 385 NGAGINTHSNEFKESALTLACYKGHLEMVRFLLEAGADQEHKTDEMHTALMEACMDGHVE 444

Query: 123 VVRAI 127
           V R +
Sbjct: 445 VARLL 449

Earliest specific in situ marker of hepatic differentiation during embryogenesis, useful for characterization of inductive events involved in hepatic specification.

Mus musculus (taxid: 10090)

>sp|O75179|ANR17_HUMAN Ankyrin repeat domain-containing protein 17 OS=Homo sapiens GN=ANKRD17 PE=1 SV=3

 Score = 60.5 bits (145), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 11/125 (8%)

Query: 13  QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIE 72
           Q  + +  L      G VD ++ L   GAS+E  ++ G TPL+ A   +G + VA+ L+E
Sbjct: 330 QSSTGNTALTYACAGGYVDVVKVLLESGASIEDHNENGHTPLMEAG-SAGHVEVARLLLE 388

Query: 73  LGANINAYR----------PAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 122
            GA IN +              +G    VR LL  GA+   + D+ HTAL  A + GH+ 
Sbjct: 389 NGAGINTHSNEFKESALTLACYKGHLEMVRFLLEAGADQEHKTDEMHTALMEACMDGHVE 448

Query: 123 VVRAI 127
           V R +
Sbjct: 449 VARLL 453

Earliest specific in situ marker of hepatic differentiation during embryogenesis, useful for characterization of inductive events involved in hepatic specification (By similarity). Target of enterovirus 71 which is the major etiological agent of HFMD (hand, foot and mouth disease).

Homo sapiens (taxid: 9606)

>sp|Q84ME1|LUL3_ARATH Probable E3 ubiquitin-protein ligase LUL3 OS=Arabidopsis thaliana GN=LUL3 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 428 LEDGVSASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTK 487
           +  G +AS ++D G    CVIC   P + A +PC H+  C  C  E++ +   CP+CR  
Sbjct: 304 ITQGTAASGLEDTGGKE-CVICLTEPKDTAVMPCRHLCLCSDCAEELRFQTNKCPICRQP 362

Query: 488 INQVIRL 494
           I++++++
Sbjct: 363 IHELVKI 369

Acts as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates (in vitro).

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SAR5|AKR2_ARATH Ankyrin repeat domain-containing protein 2 OS=Arabidopsis thaliana GN=AKR2 PE=1 SV=2

 Score = 57.4 bits (137), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 10/118 (8%)

Query: 20  LLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
           +++Q    GDV+ ++A  + G + +  D EG+T L  AC   G +  A+ LI+ GA++NA
Sbjct: 221 IVHQTASLGDVEGLKAALASGGNKDEEDSEGRTALHFAC-GYGELKCAQVLIDAGASVNA 279

Query: 80  ---------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 128
                    +  A  G +  V LLL  GA   ++N D  T + VA++   + VV+ +E
Sbjct: 280 VDKNKNTPLHYAAGYGRKECVSLLLENGAAVTLQNLDEKTPIDVAKLNSQLEVVKLLE 337

Seems to be involved in the regulation of hydrogen peroxide levels during biotic and abiotic stresses by optimizing the ascorbate peroxidase 3 (APX3) hydrogen peroxide-degrading activity. This regulation might be monitored by GRF6.

Arabidopsis thaliana (taxid: 3702)

>sp|Q24746|NEUR_DROVI Protein neuralized OS=Drosophila virilis GN=neur PE=4 SV=1

 Score = 56.6 bits (135), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 433 SASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSE--IKAKKGDCPVCRTKINQ 490
           S S+ +   SS+ C IC+E P++     CGHM  C  C  E       G CP+CR  I  
Sbjct: 681 SLSDQQSTDSSAECTICYENPIDSVLYMCGHMCMCYDCAIEQWRGVGGGQCPLCRAVIRD 740

Query: 491 VIRLYTV 497
           VIR YT 
Sbjct: 741 VIRTYTT 747

Involved in neurogenesis. Interacts with other neurogenic proteins in the specification of the neuroblast versus epidermoblast cell fate.

Drosophila virilis (taxid: 7244)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	497
109676318	499	auxin-regulated protein-like protein [Po	0.887	0.883	0.533	1e-147
225446355	497	PREDICTED: putative E3 ubiquitin-protein	0.887	0.887	0.491	1e-134
212275778	517	uncharacterized protein LOC100191485 [Ze	0.945	0.909	0.431	1e-115
147799985	500	hypothetical protein VITISV_013890 [Viti	0.925	0.92	0.466	1e-114
242048338	516	hypothetical protein SORBIDRAFT_02g01061	0.947	0.912	0.444	1e-112
115471873	513	Os07g0446100 [Oryza sativa Japonica Grou	0.909	0.881	0.435	1e-112
357122966	515	PREDICTED: probable E3 ubiquitin-protein	0.879	0.848	0.429	1e-112
125600072	493	hypothetical protein OsJ_24077 [Oryza sa	0.869	0.876	0.411	1e-102
125558167	493	hypothetical protein OsI_25836 [Oryza sa	0.873	0.880	0.412	1e-102
224082824	261	predicted protein [Populus trichocarpa]	0.494	0.942	0.7	1e-101

>gi|109676318|gb|ABG37641.1| auxin-regulated protein-like protein [Populus trichocarpa]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 296/555 (53%), Positives = 349/555 (62%), Gaps = 114/555 (20%)

Query: 1   MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD 60
           MGQSL+SM Q   +QSKDELLYQ  IAG+VDA++AL S+GA LEW+D++GKTPLIVACMD
Sbjct: 1   MGQSLDSMTQ---KQSKDELLYQLAIAGNVDAVKALCSEGAILEWIDRDGKTPLIVACMD 57

Query: 61  SGLINVAKTLIELGANINAYRPA-----------KRGLEPTVRLLLSCGANALVRNDDCH 109
           SGL NVAK LIE+GAN+NAYRP            KRGLE TV+LLLS GANALVRNDDC 
Sbjct: 58  SGLYNVAKVLIEMGANVNAYRPGRHAGTPLHHAVKRGLEQTVKLLLSSGANALVRNDDCQ 117

Query: 110 TALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA 169
           TAL VARIKG+IN+VR IESHICYF GWLREFYGP FL A APQ +SRKIW  VIP G++
Sbjct: 118 TALDVARIKGNINIVRTIESHICYFTGWLREFYGPGFLRAFAPQFLSRKIWAAVIPQGSS 177

Query: 170 NPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA 229
           NP  P + ELVIYPS QDVQPR VIALW A+I+EP F++PDP LTI+DQ+TK +YK ASA
Sbjct: 178 NPMTPKKLELVIYPSSQDVQPRTVIALWNAEIEEPNFNRPDPELTIFDQSTKTQYKLASA 237

Query: 230 NEGDKHQLQWLDNACRGTSQFL--------PSA--------------------------- 254
           NEGDK QL WL +AC G  Q +        P+                            
Sbjct: 238 NEGDKQQLHWLYDACSGIPQVMLPPMYGNPPTTVPVVGHHTSAEAVGSAMAIGGGSIQST 297

Query: 255 --------NNHQSAEAINANGWGNSANAESHNGWG---AAARTEASCSGWMDEPKKEDYK 303
                   N HQS+E INANGW +    +SHN WG   A+  +EA  SGWM         
Sbjct: 298 TEDNPLHPNTHQSSEVINANGWEDPVRGDSHNRWGVTVASTHSEARSSGWM--------- 348

Query: 304 GWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTSTRISGKEDYNGWGVPNFE 363
               E  KED+NG    N  P                        SG +D+         
Sbjct: 349 ---GEAPKEDHNGCAVPNMGP------------------------SGSQDH--------- 372

Query: 364 PIFKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESGEGPIRYPSVENSVADL 423
                   VQT  +  P S+ S  N++S  +APSAPPIP+ E   GPI YPS + S+ DL
Sbjct: 373 --------VQTRYDIPPVSETSGGNTASVPSAPSAPPIPDEELDAGPIHYPSFDFSLLDL 424

Query: 424 HLPVLEDGVS-ASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCP 482
            +P +E G S  S+V   G+SSSC+ICWEAPVEGAC+PCGHMAGCM+CLSEIKAKKG CP
Sbjct: 425 SVPAIELGASVTSDVNKGGTSSSCIICWEAPVEGACIPCGHMAGCMTCLSEIKAKKGVCP 484

Query: 483 VCRTKINQVIRLYTV 497
           +CR+ INQV RLY V
Sbjct: 485 ICRSNINQVTRLYAV 499

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446355|ref|XP_002274072.1| PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 [Vitis vinifera] gi|302143289|emb|CBI21850.3| unnamed protein product [Vitis vinifera]

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 272/553 (49%), Positives = 320/553 (57%), Gaps = 112/553 (20%)

Query: 1   MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD 60
           MGQS  SM     RQSKDELLYQ V  G+++AI+AL  +GASLEW D E KTPLIVACMD
Sbjct: 1   MGQSAGSMGG---RQSKDELLYQHVATGNIEAIKALCREGASLEWFDSEAKTPLIVACMD 57

Query: 61  SGLINVAKTLIELGANINAYRP-----------AKRGLEPTVRLLLSCGANALVRNDDCH 109
           S LI VA+TLI+LGAN+NAYRP           AKRGL+ TV+LLLS GANALVRNDD  
Sbjct: 58  SNLIMVAQTLIDLGANVNAYRPGREAGTPLHHAAKRGLDQTVKLLLSKGANALVRNDDGQ 117

Query: 110 TALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA 169
           T+L VARI G+INVVR IE+HIC F GWLRE +GP FL+ALAPQL+SRKIWVV+IP G  
Sbjct: 118 TSLDVARINGYINVVRTIENHICLFSGWLRELHGPGFLKALAPQLLSRKIWVVIIPSGFN 177

Query: 170 NPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA 229
           NPSKPLR ELVIY + QD QP  VIAL    I+EPKFHQ DP+L I+D++ K RYK ASA
Sbjct: 178 NPSKPLRLELVIYSNFQDAQPCTVIALGNVNIEEPKFHQSDPALIIFDKSNKTRYKLASA 237

Query: 230 NEGDKHQLQWLDNACRGTSQFLPSANNH--------------------------QSA--- 260
           NEGDK QL+WL NACRG  Q LP+   H                          QSA   
Sbjct: 238 NEGDKQQLRWLYNACRGIPQVLPTPMLHDARPSVPASQTATEAAELAMAVGASIQSAAVD 297

Query: 261 ------------EAINANGWGNSANAESHNGW---GAAARTEASCSGWMDEPKKEDYKGW 305
                       EA + NGWGN  +  SH GW   G    + +S SGW DE K       
Sbjct: 298 QPVLLSSTRLGSEASSTNGWGNPVDNTSHGGWSLDGTPTHSASSSSGWADESK------- 350

Query: 306 GDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTSTRISGKEDYNGWGVPNFEPI 365
                + ++NG G   S  +  + +  +T N    ++QTS               N  P+
Sbjct: 351 -----RGEFNGLGVPESRLIRNQTQLNKTQNNIPQVVQTS---------------NTNPV 390

Query: 366 FKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESGEGPIRYPSVENSVADLHL 425
                                                     EGP+ YP ++ S  DL +
Sbjct: 391 LASPAPSAPPI--------------------------PEALTEGPVYYPPIDLSPVDLSV 424

Query: 426 PVLE-DGVSASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVC 484
           P  E D    S  KD G SSSCVICWEAP+EGAC+PCGHMAGCM+CL+EIKAKKG CPVC
Sbjct: 425 PAAEYDAAGTSKTKDKGDSSSCVICWEAPIEGACIPCGHMAGCMTCLNEIKAKKGVCPVC 484

Query: 485 RTKINQVIRLYTV 497
           R KI QVI+LY V
Sbjct: 485 RAKIQQVIKLYAV 497

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212275778|ref|NP_001130389.1| uncharacterized protein LOC100191485 [Zea mays] gi|194689006|gb|ACF78587.1| unknown [Zea mays] gi|195647730|gb|ACG43333.1| protein binding protein [Zea mays] gi|224031463|gb|ACN34807.1| unknown [Zea mays] gi|414884433|tpg|DAA60447.1| TPA: putative RING zinc finger and ankyrin repeat containing protein [Zea mays]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/528 (43%), Positives = 304/528 (57%), Gaps = 58/528 (10%)

Query: 14  RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
           +QSK+ELLYQ V  G+VD IR LR QGA LEW+DKEGKTPL++ACM   L +VAK LIEL
Sbjct: 4   QQSKEELLYQQVNYGNVDGIRTLRGQGAGLEWIDKEGKTPLMLACMRPDLFDVAKVLIEL 63

Query: 74  GANINAYRP-----------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 122
           GAN+NAYRP           AK+GL+ TV LLLS GAN  + NDDC+TAL +AR KGH+N
Sbjct: 64  GANVNAYRPGSHCGTALHHAAKKGLQQTVHLLLSHGANPFIPNDDCNTALELAREKGHVN 123

Query: 123 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY 182
           VVRAIE  +C FCGW+RE Y P+FL+A+APQ M+RKIW VV+P     P++PL+ E+ IY
Sbjct: 124 VVRAIEGRLCLFCGWMRENYAPAFLDAIAPQFMTRKIWAVVLPREVRTPTRPLKLEIAIY 183

Query: 183 PSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDN 242
           P LQ  +PR+V+ LWK +I++PK +Q DPS+ I+D+ TK RYK   A EGDK QLQW  N
Sbjct: 184 PELQASKPRSVLKLWKCQIEQPKLNQADPSIIIFDKGTKTRYKILPAYEGDKQQLQWFYN 243

Query: 243 ACRGTSQFL----------PSANNHQSAEAINANGWGNSANAESHNGWGAAARTEASCSG 292
           AC G +Q L          P  N   +  ++  +     +  +        A  +++ + 
Sbjct: 244 ACCGMAQVLNTAPVAPANLPMPNPAPAISSVAPSEQSAPSKEDVELAMAINASIQSAIAE 303

Query: 293 WMDEPKKE------DYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTST 346
            +  P  +      +  GW    +   +NGWG   +      +  GQ+        Q   
Sbjct: 304 GVSVPNVQPNASTPNNNGWAAPPSN-SHNGWGPPATP--APSKTSGQS--------QVRV 352

Query: 347 RISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVES 406
                  YNGW VP        S+  QT  NP     +  + +  A   P+APP  E   
Sbjct: 353 DAPSSSTYNGWDVPGTSSSQSSSKPHQTQTNP---PVLIPQEALQALPTPTAPPFAEETF 409

Query: 407 GEGPIRYPSVENSVADLHLPVLEDGVSAS---------------NVKDDGS--SSSCVIC 449
             GP+ YPS++++  D+ +P    G S +               +  D G   S +CVIC
Sbjct: 410 YNGPVHYPSIDSTPVDVTMPATTGGGSTTVIATAAPTEQLENEADASDSGKTPSGTCVIC 469

Query: 450 WEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 497
            +APVEGAC+PCGHMAGCMSCL +I++KK  CP+CR  INQV+RLY V
Sbjct: 470 LDAPVEGACIPCGHMAGCMSCLKDIESKKWGCPICRATINQVVRLYAV 517

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147799985|emb|CAN72662.1| hypothetical protein VITISV_013890 [Vitis vinifera]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 244/523 (46%), Positives = 304/523 (58%), Gaps = 63/523 (12%)

Query: 13  QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIE 72
           Q+QSKDELL+Q V+ G+V+ I+AL  +GA LEW D+EGKTPLIVACM S L NVAKTLIE
Sbjct: 3   QQQSKDELLHQQVVYGNVEGIKALSREGAGLEWTDREGKTPLIVACMFSELFNVAKTLIE 62

Query: 73  LGANINAYRP-----------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI 121
           LGAN+NAYRP           AK+GLE TV LLLS GANALV NDDC TAL VAR KGH 
Sbjct: 63  LGANVNAYRPGRHAGTPLHHAAKKGLEETVNLLLSHGANALVMNDDCQTALDVARAKGHS 122

Query: 122 NVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVI 181
            VVR IESHIC F GWLREFYGP FLE LAPQ +SRK+WVV++PCG+  P+KP + EL I
Sbjct: 123 RVVRVIESHICLFSGWLREFYGPGFLEVLAPQWVSRKVWVVILPCGSRKPTKPFKLELAI 182

Query: 182 YPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQAT--------------------- 220
           Y SLQD QPR  IALWKA +DE KF  PDP++ I D +T                     
Sbjct: 183 YSSLQDAQPRTTIALWKANMDEAKFEDPDPAVIILDNSTISRGRRRRRCYTSREARCKPR 242

Query: 221 ---KIRYKFASANEGDKHQLQWLDNACRGTSQFL-PSANNHQSAEAINANGWGNSANAES 276
              + + K A   + D  QLQW  NAC+G  Q + P A  H +                +
Sbjct: 243 ALRQTQIKLAPEKKSDSQQLQWFCNACKGIPQAMHPPAFLHNAQTPAVP-----PTAPPT 297

Query: 277 HNGWGAAARTEASCSGWMDE-PKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTH 335
                 A    AS    M E P   D     +  A   +N     NS  +         H
Sbjct: 298 AEDLELAMAINASIQSAMQEGPPLLDSPSSFENGASTSWN-----NSVNI-------TNH 345

Query: 336 NTPAPILQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAA 395
           N P  ++      S K   +   V    P    +Q +Q        + I +    +++A 
Sbjct: 346 NCPDALVAPVAPASSKASSSECVVHEAGPSTNSTQHIQI------ETHIPDIPVQASTA- 398

Query: 396 PSAPPIPEVESGEGPIRYPSVENSVADLHLPVLEDGVSAS-NVKDDGSSSSCVICWEAPV 454
            SAPPI +    +GP++YPS+++S  DL  P  E   +AS   K+ G++SSCVIC +AP+
Sbjct: 399 -SAPPIADEVVDDGPVQYPSIDSSPVDLTSPAFETSAAASEQSKEGGAASSCVICLDAPI 457

Query: 455 EGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 497
           EGAC+PCGHMAGCMSCL+EIKAKK  CPVCR KI+QV++LY+V
Sbjct: 458 EGACIPCGHMAGCMSCLNEIKAKKWGCPVCRAKIDQVVKLYSV 500

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242048338|ref|XP_002461915.1| hypothetical protein SORBIDRAFT_02g010610 [Sorghum bicolor] gi|241925292|gb|EER98436.1| hypothetical protein SORBIDRAFT_02g010610 [Sorghum bicolor]

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 234/526 (44%), Positives = 302/526 (57%), Gaps = 55/526 (10%)

Query: 14  RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
           +QSK+ELLYQ V  G+VD IR LR QG  LEW+DKEGKTPL+VACM   L +VAK LIEL
Sbjct: 4   QQSKEELLYQQVNYGNVDGIRTLRGQGVGLEWIDKEGKTPLMVACMRPDLFDVAKVLIEL 63

Query: 74  GANINAYRP-----------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 122
           GAN+NAYRP           AK+GL+ TV LLLS GAN  + NDDC+TAL +AR KGH+N
Sbjct: 64  GANVNAYRPGSHCGTALHHAAKKGLQQTVHLLLSHGANPFIPNDDCNTALELAREKGHVN 123

Query: 123 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY 182
           VVRAIE  +  FCGW+RE Y P+FL+A+APQ M+RKIW V++P     P++PL+ EL IY
Sbjct: 124 VVRAIEGRLSLFCGWMRENYAPAFLDAIAPQFMTRKIWAVILPREVRTPTRPLKLELAIY 183

Query: 183 PSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDN 242
           P LQ  +PR V+ LWK +I++PK +Q DPS+ I+D+ TK RYK   A EGDK QLQW  N
Sbjct: 184 PELQASKPRVVVKLWKCQIEQPKLNQADPSIIIFDKGTKTRYKILPAYEGDKQQLQWFYN 243

Query: 243 ACRGTSQFL-----PSANNHQSAEA-INANGWGNSANAESHNGWGAAARTEASCSGWMDE 296
           AC G +Q       P AN      A  N++   +  +A S      A    AS    + E
Sbjct: 244 ACCGMAQVFNTAPVPPANLPMPNPAPANSSVAPSELSAPSKEDVELAMAINASIQSAIAE 303

Query: 297 --------PKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTSTRI 348
                       +  GW    +   +NGWG S + P   K          AP        
Sbjct: 304 GVPNVQPNASTPNNNGWSIPPSN-SHNGWGPSVT-PAPSKTSGQSQARVDAP-------- 353

Query: 349 SGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESGE 408
           S    YNGW VP        S+  +T  NP     +  + +  A   P+APP  E     
Sbjct: 354 SSSSTYNGWDVPGTSSGQSSSKPHKTETNP---PVLIPQEALQALPTPTAPPFAEETFYS 410

Query: 409 GPIRYPSVENSVADLHLPVLEDGVSA---------------SNVKDDGS--SSSCVICWE 451
           GP+ YPS++++  D+ +P   +G +                ++  D G   S +CVIC +
Sbjct: 411 GPVHYPSIDSTPVDVTMPATTEGGTTGSTTAAAPTKQEENEADASDSGKTPSGTCVICLD 470

Query: 452 APVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 497
           APVEGAC+PCGHMAGCMSCL +I++KK  CP+CR  INQV+RLY V
Sbjct: 471 APVEGACIPCGHMAGCMSCLKDIESKKWGCPICRATINQVVRLYAV 516

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115471873|ref|NP_001059535.1| Os07g0446100 [Oryza sativa Japonica Group] gi|75327171|sp|Q7XI08.1|XB34_ORYSJ RecName: Full=Probable E3 ubiquitin-protein ligase XBOS34; AltName: Full=Ankyrin repeat domain and RING finger-containing protein XBOS34; AltName: Full=XB3 protein homolog 4 gi|33146928|dbj|BAC79949.1| auxin-regulated protein-like protein [Oryza sativa Japonica Group] gi|113611071|dbj|BAF21449.1| Os07g0446100 [Oryza sativa Japonica Group]

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 236/542 (43%), Positives = 311/542 (57%), Gaps = 90/542 (16%)

Query: 14  RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
           +QSK+EL+YQ V  G+ D IRALR+QGA LEW+DKEGKTPL+VA M   LINV + LIEL
Sbjct: 4   QQSKEELVYQQVNYGNADGIRALRAQGAGLEWIDKEGKTPLMVASMRPDLINVVQVLIEL 63

Query: 74  GANINAYRP-----------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 122
           GAN+NAYRP           AK+GLE TV LLLS GAN  + NDDCHTAL +AR KGH+N
Sbjct: 64  GANVNAYRPGSYCGTALHHAAKKGLEQTVHLLLSHGANPFITNDDCHTALDLAREKGHVN 123

Query: 123 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY 182
           VVRAIE  I  FCGW+RE YGP FLEA APQ ++RKIW V++P    N ++PL+ EL IY
Sbjct: 124 VVRAIEGRISLFCGWMRENYGPGFLEAFAPQFLTRKIWAVILPREARNQTRPLKLELTIY 183

Query: 183 PSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDN 242
           P LQ  +P+AVI LWK +++EPKF+Q +PS+TI+D+ T+ RYK     EGDK QLQW  +
Sbjct: 184 PELQASKPQAVIKLWKCQLEEPKFNQANPSVTIFDKGTRTRYKLLPVCEGDKQQLQWFYS 243

Query: 243 ACRGTSQF---------------------------LPSANNHQSAEAINANGWGNSANAE 275
           AC G  Q                             PS  + + A AINA+    SA AE
Sbjct: 244 ACCGIPQVASMVPAQPANAPLPNPSSASSLPSVISTPSKEDAELAMAINASIL--SAIAE 301

Query: 276 SHNGWGAAARTEASCSGWMDEPKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTH 335
                     T A+               WG+  +    NGWG  ++      +  GQ  
Sbjct: 302 GVPDVQPITTTTAT-------------NDWGNPPSN-SLNGWGPPDTS--APSKTSGQV- 344

Query: 336 NTPAPILQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAA 395
               P++ +S+       YNGW VP       QS      +  + F  +  + +  +   
Sbjct: 345 ----PVVTSSS-----STYNGWDVPGTS--SGQSSSKHNKSQNSTF--VVPQEALPSLPV 391

Query: 396 PSAPPIPEVESGEGPIRYPSVENSVADLHLPVLEDGVSASNVK------------DDGSS 443
           P+APP+      +GPI+YPS++++  D+ +P  + G + S+ K             D ++
Sbjct: 392 PTAPPLAVGTFYDGPIQYPSIDSTPVDVTMPSADGGTAVSSAKPAENEGDAKPAESDANA 451

Query: 444 S--------SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 495
           S        +CVIC +APVEGAC+PCGHMAGCMSCL +I++KK  CP+CR KINQ+IRLY
Sbjct: 452 SNSGNTPPGTCVICLDAPVEGACIPCGHMAGCMSCLKDIESKKWGCPICRAKINQIIRLY 511

Query: 496 TV 497
            V
Sbjct: 512 AV 513

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357122966|ref|XP_003563184.1| PREDICTED: probable E3 ubiquitin-protein ligase XBOS34-like [Brachypodium distachyon]

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 240/559 (42%), Positives = 308/559 (55%), Gaps = 122/559 (21%)

Query: 14  RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
           +QSK+ELLYQ V  G+++ IR LR+QGA LEW+DKEGKTPL+VA M   L+NVAK LIEL
Sbjct: 4   QQSKEELLYQQVNYGNIEGIRTLRTQGAGLEWIDKEGKTPLMVASMRPDLLNVAKVLIEL 63

Query: 74  GANINAYRP-----------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 122
           GAN+NAYRP           AKRGLE TV LLLS GAN  + NDDC+TAL +AR KGH+ 
Sbjct: 64  GANVNAYRPGSHAGTALHHAAKRGLELTVHLLLSHGANPFITNDDCNTALDLAREKGHVK 123

Query: 123 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY 182
           VVRAIE  I  FCGW+RE YGP FLEA APQ M+RKIW V++P    NP++P++ EL IY
Sbjct: 124 VVRAIEGRISLFCGWMRENYGPGFLEAFAPQFMTRKIWAVILPREARNPARPVKLELAIY 183

Query: 183 PSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDN 242
           P LQ  +PRAV+ LWK++I+EPK++Q DPS+ I+D+ TK RYK  SA EGDK Q++   +
Sbjct: 184 PELQASKPRAVVKLWKSQIEEPKYNQADPSMAIFDKVTKTRYKILSAFEGDKQQIRSFYS 243

Query: 243 ACRGTSQFL-----------------------------PSANNHQSAEAINA-------- 265
           AC G +Q +                             PS  + + A AINA        
Sbjct: 244 ACCGMAQVVSMVPARPANAPVPNPLPINTSSTPSVLSTPSKEDVELAMAINASIQSAIAE 303

Query: 266 --------------NGWGNSANAESHNGWG---AAARTEASCSGWMDEPKKEDYKGWGDE 308
                         NGWGN+AN+ S +GWG   A A ++ S  G  D P    Y GW   
Sbjct: 304 GVPNIEPTTSTINTNGWGNTANS-SLSGWGPPDAHAPSKISGQGQADAPSSSTYNGW--- 359

Query: 309 QAKEDYNGWGASNSEPVCGKREDGQTHNTPAPILQTSTRISGKEDYNGWGVPNFEPIFKQ 368
               D  G  AS S     K +   +   P  +  T                        
Sbjct: 360 ----DIPGTSASQSSSTPNKSQTNPSVVIPQEVPPTV----------------------- 392

Query: 369 SQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESGEGPIRYPSVENSVADLHLPVL 428
                    P P +  +    ++   A       E     GPI+YPS++ +  D+ +P  
Sbjct: 393 ---------PTPTALPAIPTPTAPPLA-------EGTFYNGPIQYPSIDFTPVDVTMPTA 436

Query: 429 EDGVSASNVK---DDGSSSS-------CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK 478
           E  V  ++ K   +D  +SS       CVIC +APVEGAC+PCGHMAGCMSCL +I++KK
Sbjct: 437 EGAVVVNSSKPGENDADTSSGNTPSGTCVICLDAPVEGACIPCGHMAGCMSCLKDIESKK 496

Query: 479 GDCPVCRTKINQVIRLYTV 497
             CP+CR KINQ+IRLY V
Sbjct: 497 WGCPICRAKINQIIRLYAV 515

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125600072|gb|EAZ39648.1| hypothetical protein OsJ_24077 [Oryza sativa Japonica Group]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 223/542 (41%), Positives = 297/542 (54%), Gaps = 110/542 (20%)

Query: 14  RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
           +QSK+EL+YQ                    +W+DKEGKTPL+VA M   LINV + LIEL
Sbjct: 4   QQSKEELVYQ--------------------QWIDKEGKTPLMVASMRPDLINVVQVLIEL 43

Query: 74  GANINAYRP-----------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 122
           GAN+NAYRP           AK+GLE TV LLLS GAN  + NDDCHTAL +AR KGH+N
Sbjct: 44  GANVNAYRPGSYCGTALHHAAKKGLEQTVHLLLSHGANPFITNDDCHTALDLAREKGHVN 103

Query: 123 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY 182
           VVRAIE  I  FCGW+RE YGP FLEA APQ ++RKIW V++P    N ++PL+ EL IY
Sbjct: 104 VVRAIEGRISLFCGWMRENYGPGFLEAFAPQFLTRKIWAVILPREARNQTRPLKLELTIY 163

Query: 183 PSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDN 242
           P LQ  +P+AVI LWK +++EPKF+Q +PS+TI+D+ T+ RYK     EGDK QLQW  +
Sbjct: 164 PELQASKPQAVIKLWKCQLEEPKFNQANPSVTIFDKGTRTRYKLLPVCEGDKQQLQWFYS 223

Query: 243 ACRGTSQF---------------------------LPSANNHQSAEAINANGWGNSANAE 275
           AC G  Q                             PS  + + A AINA+    SA AE
Sbjct: 224 ACCGIPQVASMVPAQPANAPLPNPSSASSLPSVISTPSKEDAELAMAINASIL--SAIAE 281

Query: 276 SHNGWGAAARTEASCSGWMDEPKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTH 335
                     T A+               WG+  +    NGWG  ++      +  GQ  
Sbjct: 282 GVPDVQPITTTTAT-------------NDWGNPPSN-SLNGWGPPDTS--APSKTSGQV- 324

Query: 336 NTPAPILQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAA 395
               P++ +S+       YNGW VP       QS      +  + F  +  + +  +   
Sbjct: 325 ----PVVTSSS-----STYNGWDVPGTS--SGQSSSKHNKSQNSTF--VVPQEALPSLPV 371

Query: 396 PSAPPIPEVESGEGPIRYPSVENSVADLHLPVLEDGVSASNVK------------DDGSS 443
           P+APP+      +GPI+YPS++++  D+ +P  + G + S+ K             D ++
Sbjct: 372 PTAPPLAVGTFYDGPIQYPSIDSTPVDVTMPSADGGTAVSSAKPAENEGDAKPAESDANA 431

Query: 444 S--------SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 495
           S        +CVIC +APVEGAC+PCGHMAGCMSCL +I++KK  CP+CR KINQ+IRLY
Sbjct: 432 SNSGNTPPGTCVICLDAPVEGACIPCGHMAGCMSCLKDIESKKWGCPICRAKINQIIRLY 491

Query: 496 TV 497
            V
Sbjct: 492 AV 493

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125558167|gb|EAZ03703.1| hypothetical protein OsI_25836 [Oryza sativa Indica Group]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 223/540 (41%), Positives = 296/540 (54%), Gaps = 106/540 (19%)

Query: 14  RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
           +QSK+EL+YQ                    +W+DKEGKTPL+VA M   LINV + LIEL
Sbjct: 4   QQSKEELVYQ--------------------QWIDKEGKTPLMVASMRPDLINVVQVLIEL 43

Query: 74  GANINAYRP-----------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 122
           GAN+NAYRP           AK+GLE TV LLLS GAN  + NDDCHTAL +AR KGH+N
Sbjct: 44  GANVNAYRPGSYCGTALHHAAKKGLEQTVHLLLSHGANPFITNDDCHTALDLAREKGHVN 103

Query: 123 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY 182
           VVRAIE  I  FCGW+RE YGP FLEA APQ ++RKIW V++P    N ++PL+ EL IY
Sbjct: 104 VVRAIEGRISLFCGWMRENYGPGFLEAFAPQFLTRKIWAVILPREARNQTRPLKLELTIY 163

Query: 183 PSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDN 242
           P LQ  +P+AVI LWK +++EPKF+Q +PS+TI+D+ T+ RYK     EGDK QLQW  +
Sbjct: 164 PELQASKPQAVIKLWKCQLEEPKFNQANPSVTIFDKGTRTRYKLLPVCEGDKQQLQWFYS 223

Query: 243 ACRGTSQF---------------------LPSANNHQSAE----AINANGWGNSANAESH 277
           AC G  Q                      LPS  +  S E    A+  N    SA AE  
Sbjct: 224 ACCGIPQVASMVPAQPANAPLPNPSSASSLPSVISTPSKEDAELAMVINASIQSAIAEGV 283

Query: 278 NGWGAAARTEASCSGWMDEPKKEDYKGWGDEQAKEDYNGWGASNSEPVCGKREDGQTHNT 337
                   T A+               WG+  +    NGWG  ++      +  GQ    
Sbjct: 284 PDVQPITTTTAT-------------NDWGNPPSN-SLNGWGPPDTS--APSKTSGQV--- 324

Query: 338 PAPILQTSTRISGKEDYNGWGVPNFEPIFKQSQDVQTLANPAPFSQISNRNSSSASAAPS 397
             P++ +S+       YNGW VP       QS      +  + F  +  + +  +   P+
Sbjct: 325 --PVVTSSS-----STYNGWDVPGTS--SGQSSSKHNKSQNSTF--VVPQEALPSLPVPT 373

Query: 398 APPIPEVESGEGPIRYPSVENSVADLHLPVLEDGVSASNVK------------DDGSSS- 444
           APP+      +GPI+YPS++++  D+ +P  + G + S+ K             D ++S 
Sbjct: 374 APPLAVGTFYDGPIQYPSIDSTPVDVTMPSADGGTAVSSAKPAENEGDAKPAESDANASN 433

Query: 445 -------SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 497
                  +CVIC +APVEGAC+PCGHMAGCMSCL +I++KK  CP+CR KINQ+IRLY V
Sbjct: 434 SGNTPPGTCVICLDAPVEGACIPCGHMAGCMSCLKDIESKKWGCPICRAKINQIIRLYAV 493

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082824|ref|XP_002306854.1| predicted protein [Populus trichocarpa] gi|222856303|gb|EEE93850.1| predicted protein [Populus trichocarpa]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/260 (70%), Positives = 208/260 (80%), Gaps = 14/260 (5%)

Query: 1   MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD 60
           MGQSL+SM Q   +QSKDELLYQ  IAG+VDA++AL S+GA LEW+D++GKTPLIVACMD
Sbjct: 1   MGQSLDSMTQ---KQSKDELLYQLAIAGNVDAVKALCSEGAILEWIDRDGKTPLIVACMD 57

Query: 61  SGLINVAKTLIELGANINAYRP-----------AKRGLEPTVRLLLSCGANALVRNDDCH 109
           SGL NVAK LIE+GAN+NAYRP            KRGLE TV+LLLS GANALVRNDDC 
Sbjct: 58  SGLYNVAKVLIEMGANVNAYRPGRHAGTPLHHAVKRGLEQTVKLLLSSGANALVRNDDCQ 117

Query: 110 TALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA 169
           TAL VARIKG+IN+VR IESHICYF GWLREFYGP FL A APQ +SRKIW  VIP G++
Sbjct: 118 TALDVARIKGNINIVRTIESHICYFTGWLREFYGPGFLRAFAPQFLSRKIWAAVIPQGSS 177

Query: 170 NPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA 229
           NP  P + ELVIYPS QDVQPR VIALW A+I+EP F++PDP LTI+DQ+TK +YK ASA
Sbjct: 178 NPMTPKKLELVIYPSSQDVQPRTVIALWNAEIEEPNFNRPDPELTIFDQSTKTQYKLASA 237

Query: 230 NEGDKHQLQWLDNACRGTSQ 249
           NEGDK QL WL +AC G  Q
Sbjct: 238 NEGDKQQLHWLYDACSGIPQ 257

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	497
TAIR|locus:2086263	462	XBAT35 "XB3 ortholog 5 in Arab	0.418	0.450	0.625	9.1e-103
TAIR|locus:505006458	376	XBAT34 "XB3 ortholog 4 in Arab	0.424	0.561	0.569	3.6e-84
TAIR|locus:4515102961	399	APD4 "ABERRANT POLLEN DEVELOPM	0.173	0.215	0.388	1.5e-08
TAIR|locus:2042922	404	APD3 "ABERRANT POLLEN DEVELOPM	0.173	0.212	0.377	5.7e-08
UNIPROTKB|D4A2R5	464	Mex3c "Protein Mex3c" [Rattus	0.167	0.178	0.357	1.2e-07
RGD|1309023	511	Mex3c "mex-3 homolog C (C. ele	0.167	0.162	0.357	1.5e-07
UNIPROTKB|F1N0W7	516	MEX3C "Uncharacterized protein	0.167	0.160	0.357	1.5e-07
MGI|MGI:2652843	652	Mex3c "mex3 homolog C (C. eleg	0.167	0.127	0.357	2.1e-07
UNIPROTKB|Q5U5Q3	659	MEX3C "RNA-binding E3 ubiquiti	0.167	0.125	0.357	2.2e-07
UNIPROTKB|J9P0S0	414	MEX3C "Uncharacterized protein	0.167	0.200	0.357	2.6e-07

TAIR|locus:2086263 XBAT35 "XB3 ortholog 5 in Arabidopsis thaliana" [Arabidopsis thaliana (taxid:3702)]

 Score = 704 (252.9 bits), Expect = 9.1e-103, Sum P(3) = 9.1e-103
 Identities = 137/219 (62%), Positives = 165/219 (75%)

Query:    13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIE 72
             Q+QSK ELLYQ V  G+ + IRAL   G  LEWMD+EGKTPLI+ACM+S L +VAKTLIE
Sbjct:     3 QQQSKGELLYQQVSYGNSEGIRALHRDGGDLEWMDREGKTPLILACMNSELFDVAKTLIE 62

Query:    73 LGANINAYRP-----------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI 121
             LG+N+NAYRP           AKRGLE TV+LLLS GAN LV NDDC T L VAR+KG  
Sbjct:    63 LGSNVNAYRPGRHAGTPLHHAAKRGLENTVKLLLSHGANPLVLNDDCQTPLEVARVKGFS 122

Query:   122 NVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVI 181
             NVVRAIE HIC F GW+REFYGP+FL+  APQL+SR++WVV++P G+ NP+KP + ELV+
Sbjct:   123 NVVRAIEKHICLFSGWMREFYGPTFLDLFAPQLLSRRVWVVIVPTGSRNPTKPFKLELVV 182

Query:   182 YPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQAT 220
             Y SLQD QPR V+ LWKA ++EPK  Q D S+ I D +T
Sbjct:   183 YASLQDAQPRTVMPLWKANLEEPKAKQSDTSVMIVDNST 221

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:505006458 XBAT34 "XB3 ortholog 4 in Arabidopsis thaliana" [Arabidopsis thaliana (taxid:3702)]

 Score = 601 (216.6 bits), Expect = 3.6e-84, Sum P(3) = 3.6e-84
 Identities = 127/223 (56%), Positives = 161/223 (72%)

Query:     8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVA 67
             M Q QQ QSKDE+L+Q V   +V+ I++L  +GA LE +DK G+TPLI+AC +  L +VA
Sbjct:     1 MGQ-QQSQSKDEMLFQEVSNNNVEGIKSLHHEGAGLEGVDKLGRTPLILACTNDDLYDVA 59

Query:    68 KTLIELGANINAYR-------P----AKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 116
             KTL+ELG+N+NAYR       P    AKRGL  TV+LLLS GAN LV +DD  TAL VAR
Sbjct:    60 KTLLELGSNVNAYRSGCNGGTPLHHAAKRGLVHTVKLLLSHGANPLVLDDDVKTALEVAR 119

Query:   117 IKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLR 176
              +G+ NVVRAIESHIC F G +RE+ G S L   APQL+SRK+WVVV+P G+ NP+KPL+
Sbjct:   120 DEGYSNVVRAIESHICLFSGCMREYSGSSLLNLFAPQLLSRKVWVVVVPTGSRNPTKPLK 179

Query:   177 FELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQA 219
              ELV+Y S+QD QPR VI LWKA ++EPK  + D S+ I D +
Sbjct:   180 LELVLYDSIQDAQPRMVIPLWKANLEEPKSFRCDDSVMIIDDS 222

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009646 "response to absence of light" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:4515102961 APD4 "ABERRANT POLLEN DEVELOPMENT 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 35/90 (38%), Positives = 50/90 (55%)

Query:   407 GEGPIRYPSVENSVADLHLPVLEDGVSASNVKDDGSSSSCVICWEAPVEGACVPCGHMAG 466
             GEG   + S ++SV    L    D    ++V +  + S C IC++AP +   +PCGH   
Sbjct:   313 GEG---FLSEDDSVRTCLLADKGDNDCCNDV-EASNKSLCAICFDAPRDCCFLPCGHCVS 368

Query:   467 CMSCLSEIKAKKGDCPVCRTKINQVIRLYT 496
             C  C ++IK  KG CP+CR KI  V R+YT
Sbjct:   369 CYQCGTKIKRTKGRCPICRKKIMHVKRIYT 398

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007067 "mitosis" evidence=IMP

TAIR|locus:2042922 APD3 "ABERRANT POLLEN DEVELOPMENT 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 5.7e-08, P = 5.7e-08
 Identities = 34/90 (37%), Positives = 50/90 (55%)

Query:   407 GEGPIRYPSVENSVADLHLPVLEDGVSASNVKDDGSSSSCVICWEAPVEGACVPCGHMAG 466
             GEG   + S ++SV    L    D    ++V +  + S C IC++AP +   +PCGH   
Sbjct:   318 GEG---FLSGDDSVRTCLLADKGDNDCCNDV-EASNKSLCAICFDAPRDCCFLPCGHCVS 373

Query:   467 CMSCLSEIKAKKGDCPVCRTKINQVIRLYT 496
             C  C ++IK  KG CP+CR K+  V R+YT
Sbjct:   374 CYQCGTKIKRTKGRCPICRKKMIHVKRIYT 403

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007067 "mitosis" evidence=IMP

UNIPROTKB|D4A2R5 Mex3c "Protein Mex3c" [Rattus norvegicus (taxid:10116)]

 Score = 152 (58.6 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 34/95 (35%), Positives = 53/95 (55%)

Query:   414 PSVENSVA-DLHLPVLEDGVSASNVKDDGSSSS----------CVICWEAPVEGACVPCG 462
             PS  N V   +++P   +G ++ +  + GS+SS          CVIC+E  V  A VPCG
Sbjct:   370 PSTGNHVGLPIYIPAFSNGTNSYSSSNGGSTSSSPPESRRKHDCVICFENEVIAALVPCG 429

Query:   463 HMAGCMSCLSEIKAKKG-DCPVCRTKINQVIRLYT 496
             H   CM C ++I  K+   CPVC+T + Q I++++
Sbjct:   430 HNLFCMECANKICEKRTPSCPVCQTAVTQAIQIHS 464

GO:0003723 "RNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

RGD|1309023 Mex3c "mex-3 homolog C (C. elegans)" [Rattus norvegicus (taxid:10116)]

 Score = 152 (58.6 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 34/95 (35%), Positives = 53/95 (55%)

Query:   414 PSVENSVA-DLHLPVLEDGVSASNVKDDGSSSS----------CVICWEAPVEGACVPCG 462
             PS  N V   +++P   +G ++ +  + GS+SS          CVIC+E  V  A VPCG
Sbjct:   417 PSTGNHVGLPIYIPAFSNGTNSYSSSNGGSTSSSPPESRRKHDCVICFENEVIAALVPCG 476

Query:   463 HMAGCMSCLSEIKAKKG-DCPVCRTKINQVIRLYT 496
             H   CM C ++I  K+   CPVC+T + Q I++++
Sbjct:   477 HNLFCMECANKICEKRTPSCPVCQTAVTQAIQIHS 511

GO:0003723 "RNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA;ISO

UNIPROTKB|F1N0W7 MEX3C "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 152 (58.6 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 34/95 (35%), Positives = 53/95 (55%)

Query:   414 PSVENSVA-DLHLPVLEDGVSASNVKDDGSSSS----------CVICWEAPVEGACVPCG 462
             PS  N V   +++P   +G ++ +  + GS+SS          CVIC+E  V  A VPCG
Sbjct:   422 PSTGNHVGLPIYIPAFSNGTNSYSSSNGGSTSSSPPESRRKHDCVICFENEVIAALVPCG 481

Query:   463 HMAGCMSCLSEIKAKKG-DCPVCRTKINQVIRLYT 496
             H   CM C ++I  K+   CPVC+T + Q I++++
Sbjct:   482 HNLFCMECANKICEKRTPSCPVCQTAVTQAIQIHS 516

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

MGI|MGI:2652843 Mex3c "mex3 homolog C (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 152 (58.6 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 34/95 (35%), Positives = 53/95 (55%)

Query:   414 PSVENSVA-DLHLPVLEDGVSASNVKDDGSSSS----------CVICWEAPVEGACVPCG 462
             PS  N V   +++P   +G ++ +  + GS+SS          CVIC+E  V  A VPCG
Sbjct:   558 PSTGNHVGLPIYIPAFSNGTNSYSSSNGGSTSSSPPESRRKHDCVICFENEVIAALVPCG 617

Query:   463 HMAGCMSCLSEIKAKKG-DCPVCRTKINQVIRLYT 496
             H   CM C ++I  K+   CPVC+T + Q I++++
Sbjct:   618 HNLFCMECANKICEKRTPSCPVCQTAVTQAIQIHS 652

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q5U5Q3 MEX3C "RNA-binding E3 ubiquitin-protein ligase MEX3C" [Homo sapiens (taxid:9606)]

 Score = 152 (58.6 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 34/95 (35%), Positives = 53/95 (55%)

Query:   414 PSVENSVA-DLHLPVLEDGVSASNVKDDGSSSS----------CVICWEAPVEGACVPCG 462
             PS  N V   +++P   +G ++ +  + GS+SS          CVIC+E  V  A VPCG
Sbjct:   565 PSTGNHVGLPIYIPAFSNGTNSYSSSNGGSTSSSPPESRRKHDCVICFENEVIAALVPCG 624

Query:   463 HMAGCMSCLSEIKAKKG-DCPVCRTKINQVIRLYT 496
             H   CM C ++I  K+   CPVC+T + Q I++++
Sbjct:   625 HNLFCMECANKICEKRTPSCPVCQTAVTQAIQIHS 659

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|J9P0S0 MEX3C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 152 (58.6 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
 Identities = 34/95 (35%), Positives = 53/95 (55%)

Query:   414 PSVENSVA-DLHLPVLEDGVSASNVKDDGSSSS----------CVICWEAPVEGACVPCG 462
             PS  N V   +++P   +G ++ +  + GS+SS          CVIC+E  V  A VPCG
Sbjct:   320 PSTGNHVGLPIYIPAFSNGTNSYSSSNGGSTSSSPPESRRKHDCVICFENEVIAALVPCG 379

Query:   463 HMAGCMSCLSEIKAKKG-DCPVCRTKINQVIRLYT 496
             H   CM C ++I  K+   CPVC+T + Q I++++
Sbjct:   380 HNLFCMECANKICEKRTPSCPVCQTAVTQAIQIHS 414

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7XI08	XB34_ORYSJ	6, ., 3, ., 2, ., -	0.4354	0.9094	0.8810	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	497
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-17
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-13
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	2e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-09
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	2e-08
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	2e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-06
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	6e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-05
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-05
COG5574	271	COG5574, PEX10, RING-finger-containing E3 ubiquiti	3e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	6e-04
smart00248	30	smart00248, ANK, ankyrin repeats	7e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	7e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.002
COG5236	493	COG5236, COG5236, Uncharacterized conserved protei	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 78.2 bits (193), Expect = 2e-17
 Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 10/112 (8%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA----- 79
              G ++ ++ L   GA +   D +G+TPL +A   +G + + K L+E GA++NA     
Sbjct: 15  ASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAK-NGHLEIVKLLLEKGADVNARDKDG 73

Query: 80  ----YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
               +  A+ G    V+LLL  GA+   R+ D  T L +A   GH+ VV+ +
Sbjct: 74  NTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 67.0 bits (164), Expect = 2e-13
 Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 10/93 (10%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKRGLEPTVRLLLSC 97
           D++G+TPL +A   +G + V K L+E GA++NA            AK G    V+LLL  
Sbjct: 4   DEDGRTPLHLAAS-NGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEK 62

Query: 98  GANALVRNDDCHTALGVARIKGHINVVRAIESH 130
           GA+   R+ D +T L +A   G+++VV+ +  H
Sbjct: 63  GADVNARDKDGNTPLHLAARNGNLDVVKLLLKH 95

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 64.3 bits (157), Expect = 2e-13
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 446 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQV 491
           CVIC E P     +PCGH+  C  C   +++KK  CP+CR  I  V
Sbjct: 5   CVICLERPRNVVFLPCGHLCLCEECAKRLRSKK-KCPICRQPIESV 49

Length = 49

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 12/90 (13%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP-- 82
              G+++ ++ L  +GA +   D +  T L +A   +G + + K L+E GA++NA     
Sbjct: 5   AKNGNLELVKLLLEKGADVNLGDTD--TALHLAAR-NGNLEIVKLLLEHGADVNAKDKDG 61

Query: 83  -------AKRGLEPTVRLLLSCGANALVRN 105
                  A+ G    V+LLL  GA+  +++
Sbjct: 62  NTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 52.6 bits (127), Expect = 6e-09
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA 75
            D  L+     G+++ ++ L   GA +   DK+G T L +A   +G + + K L+E GA
Sbjct: 27 DTDTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAAR-NGNLEIVKLLLEHGA 85

Query: 76 NINA 79
          +IN 
Sbjct: 86 DINL 89

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 52.6 bits (127), Expect = 6e-09
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 8/84 (9%)

Query: 54  LIVACMDSGLINVAKTLIELGANINAYR---P----AKRGLEPTVRLLLSCGANALVRND 106
           L +A   +G + + K L+E GA++N           A+ G    V+LLL  GA+   ++ 
Sbjct: 1   LHLAAK-NGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDK 59

Query: 107 DCHTALGVARIKGHINVVRAIESH 130
           D +TAL +A   G++ +V+ +  H
Sbjct: 60  DGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 442 SSSSCVICWEAPVE-GACVPCGHMAGCMSCLSEIKAKKGDCPVCRT 486
               C IC +   +     PCGH+  C  C+     KK  CP+CRT
Sbjct: 1   EELECPICLDLLRDPVVLTPCGHVF-CRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 445 SCVICWEAPVEGACV---PCGHMAGCMSCLSEIKAKKGDCPVCRTK 487
            C IC +    G  V   PCGH+     CL +       CP+CR  
Sbjct: 2   ECPICLDEFEPGEEVVVLPCGHVF-HKECLDKWLRSSNTCPLCRAP 46

Length = 46

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 40/142 (28%), Positives = 57/142 (40%), Gaps = 16/142 (11%)

Query: 6   NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACM----DS 61
              +   +       L+     GD   ++ L + GA +   D +G TPL +A +      
Sbjct: 62  VDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPE 121

Query: 62  GLINVAKTLIELGAN--INAYR----------PAKRGLEPTVRLLLSCGANALVRNDDCH 109
           G I VAK L+E GA+  +N  R           A  G    V LLL  GA+   RN    
Sbjct: 122 GNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGV 181

Query: 110 TALGVARIKGHINVVRAIESHI 131
           TAL  A   G I +V+ +    
Sbjct: 182 TALDPAAKNGRIELVKLLLDKG 203

Length = 235

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 17/137 (12%)

Query: 29  DVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA--------- 79
             D +R L   GA +   ++ G TPL +   ++  ++V K LI+ GA++NA         
Sbjct: 62  VKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPL 121

Query: 80  --YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH---INVVRAIESHICYF 134
             Y          +RLLL  GA+    +    T L V  +K     + ++R +       
Sbjct: 122 HVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVL-LKSRNANVELLRLLIDAGADV 180

Query: 135 CGWLREFYGPSFLEALA 151
                +    S L    
Sbjct: 181 YA--VDDRFRSLLHHHL 195

Length = 471

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 42.8 bits (101), Expect = 6e-06
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 446 CVICWEAPVEGACV-PCGHMAGCMSCLSE-IKAKKGDCPVCRTKI 488
           C IC E   E   + PCGH+  C SC+ + +K+ K  CP+CRT I
Sbjct: 2   CPICLEEFREPVVLLPCGHVF-CRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 29/135 (21%)

Query: 16  SKDELLYQWVIAGD---VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAK---T 69
             +  LY +++      V+ +R L + GA + +  + GKTPL +  +      V      
Sbjct: 10  IMEAALYDYLLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHL-YLHYSSEKVKDIVRL 68

Query: 70  LIELGANINAYRPAKRGL------------EPTVRLLLSCGANALVRNDDC-----HTAL 112
           L+E GA++NA  P + G                ++LL+  GA+   + D       H  L
Sbjct: 69  LLEAGADVNA--PERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAK-DKVGRTPLHVYL 125

Query: 113 GVARIKGHINVVRAI 127
               I  +  V+R +
Sbjct: 126 SGFNI--NPKVIRLL 138

Length = 471

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 22/137 (16%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVA---CMDSGLINVAKTLIELGANI 77
           L+  V   +   +  L   GAS +  DK G TPL ++   C D    ++ K L+E G ++
Sbjct: 205 LHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKD---YDILKLLLEHGVDV 261

Query: 78  NAYRPAKRGLEP---------TVRLLLSCGANALVRNDDCHTALGVARIKGH-INVVRAI 127
           NA +    GL            ++LLL  GA+    N    T L  A  +   IN+ R +
Sbjct: 262 NA-KSYILGLTALHSSIKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRIL 320

Query: 128 ESHICYFCGWLREFYGP 144
            S+IC     L +   P
Sbjct: 321 ISNIC-----LLKRIKP 332

Length = 477

>gnl|CDD|227861 COG5574, PEX10, RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 446 CVICWEAPVEGACVPCGHMAGCMSCL--SEIKAKKGDCPVCRTK 487
           C +C E P   +C PCGH+  C+SCL  S  K K   CP+CR K
Sbjct: 218 CFLCLEEPEVPSCTPCGHLF-CLSCLLISWTKKKYEFCPLCRAK 260

Length = 271

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 2/94 (2%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L Q   +GD    R L + GA     D +G+TPL +AC + G + V + L+E GA+    
Sbjct: 86  LCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACAN-GHVQVVRVLLEFGADPTLL 144

Query: 81  -RPAKRGLEPTVRLLLSCGANALVRNDDCHTALG 113
            +  K  LE             L R+  CH  LG
Sbjct: 145 DKDGKTPLELAEENGFREVVQLLSRHSQCHFELG 178

Length = 664

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.8 bits (86), Expect = 7e-04
 Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)

Query: 49 EGKTPLIVACMDSGLINVAKTLIELGANINA 79
          +G+TPL +A   +G + V K L++ GA+INA
Sbjct: 1  DGRTPLHLAAE-NGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 15/104 (14%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+  V+ GD+  I  L    A L+  D  G TPLI+A M  G I + K L++ GANI+ +
Sbjct: 139 LHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIA-MAKGDIAICKMLLDSGANIDYF 197

Query: 81  --RP-------AKRGLEP-TVRLLLSCGANA----LVRNDDCHT 110
                      A    +   VRL +  GA+     ++  ++C  
Sbjct: 198 GKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTI 241

Length = 413

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 25 VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI 71
           I+G ++ ++ L  +G  +   D++G T L +A   +G + V K L+
Sbjct: 9  AISGRLELVKYLLEKGVDINRTDEDGNTALHIAAE-NGNLEVLKLLL 54

Length = 54

>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 432 VSASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA--KKGDCPVCRTKIN 489
            ++S    D  + +C IC  +    A  PCGH   C +C   ++A   +  CP+CRT+  
Sbjct: 50  TTSSADDTDEENMNCQICAGSTTYSARYPCGHQI-CHACAVRLRALYMQKGCPLCRTETE 108

Query: 490 QVI 492
            V+
Sbjct: 109 AVV 111

Length = 493

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	497
PHA02791	284	ankyrin-like protein; Provisional	99.97
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.97
PHA02946	446	ankyin-like protein; Provisional	99.97
PHA02874	434	ankyrin repeat protein; Provisional	99.96
PHA02878	477	ankyrin repeat protein; Provisional	99.96
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.96
PHA03095	471	ankyrin-like protein; Provisional	99.96
PHA03100	480	ankyrin repeat protein; Provisional	99.95
PHA03100	480	ankyrin repeat protein; Provisional	99.95
PHA02875	413	ankyrin repeat protein; Provisional	99.95
PHA03095	471	ankyrin-like protein; Provisional	99.95
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.95
PHA02791	284	ankyrin-like protein; Provisional	99.95
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.95
PHA02874	434	ankyrin repeat protein; Provisional	99.95
PHA02946	446	ankyin-like protein; Provisional	99.94
PHA02876	682	ankyrin repeat protein; Provisional	99.94
PHA02875	413	ankyrin repeat protein; Provisional	99.94
PHA02989	494	ankyrin repeat protein; Provisional	99.94
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.94
PHA02876	682	ankyrin repeat protein; Provisional	99.94
PHA02730	672	ankyrin-like protein; Provisional	99.94
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.94
KOG0510	929	consensus Ankyrin repeat protein [General function	99.93
KOG0508	615	consensus Ankyrin repeat protein [General function	99.93
PHA02859	209	ankyrin repeat protein; Provisional	99.93
PHA02798	489	ankyrin-like protein; Provisional	99.93
PHA02989	494	ankyrin repeat protein; Provisional	99.93
PHA02917	661	ankyrin-like protein; Provisional	99.92
PHA02795	437	ankyrin-like protein; Provisional	99.92
PHA02798	489	ankyrin-like protein; Provisional	99.92
PHA02878	477	ankyrin repeat protein; Provisional	99.91
KOG0508	615	consensus Ankyrin repeat protein [General function	99.91
PHA02795	437	ankyrin-like protein; Provisional	99.9
PHA02859	209	ankyrin repeat protein; Provisional	99.89
KOG0510	929	consensus Ankyrin repeat protein [General function	99.89
PHA02730	672	ankyrin-like protein; Provisional	99.89
KOG0514	452	consensus Ankyrin repeat protein [General function	99.87
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.87
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.87
PHA02743	166	Viral ankyrin protein; Provisional	99.87
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.86
PHA02741	169	hypothetical protein; Provisional	99.86
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.85
PHA02917	661	ankyrin-like protein; Provisional	99.85
PHA02792	631	ankyrin-like protein; Provisional	99.84
PHA02736	154	Viral ankyrin protein; Provisional	99.84
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.83
PHA02792	631	ankyrin-like protein; Provisional	99.83
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.83
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.82
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.82
KOG0514	452	consensus Ankyrin repeat protein [General function	99.81
PHA02884	300	ankyrin repeat protein; Provisional	99.8
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.79
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.77
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.73
PHA02743	166	Viral ankyrin protein; Provisional	99.72
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.72
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.72
PHA02741	169	hypothetical protein; Provisional	99.71
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.71
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.71
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.7
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.69
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.69
PHA02736	154	Viral ankyrin protein; Provisional	99.66
PHA02884	300	ankyrin repeat protein; Provisional	99.65
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.64
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.63
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.61
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.6
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.55
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.55
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.48
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.46
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.45
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.44
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	99.4
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.39
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.38
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.37
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.33
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.32
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.29
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.28
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.27
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	99.26
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.17
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	99.09
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	99.07
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.04
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.92
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.91
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.91
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.81
PHA02929	238	N1R/p28-like protein; Provisional	98.76
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.75
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.73
PF13606	30	Ank_3: Ankyrin repeat	98.73
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.72
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.72
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	98.71
PF13606	30	Ank_3: Ankyrin repeat	98.69
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.67
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.66
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.65
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.58
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.51
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.47
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.44
PHA02926	242	zinc finger-like protein; Provisional	98.43
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.39
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.39
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.39
PF14634	44	zf-RING_5: zinc-RING finger domain	98.38
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.37
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.32
KOG0522	560	consensus Ankyrin repeat protein [General function	98.32
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.32
KOG0522	560	consensus Ankyrin repeat protein [General function	98.3
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.3
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.28
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.24
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.24
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.24
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.17
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.07
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.05
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	98.04
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	98.04
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.01
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	97.96
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.89
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.88
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	97.86
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.82
KOG2384	223	consensus Major histocompatibility complex protein	97.8
KOG2384	223	consensus Major histocompatibility complex protein	97.8
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.76
KOG0511	516	consensus Ankyrin repeat protein [General function	97.74
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	97.72
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	97.67
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.59
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	97.56
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.52
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	97.45
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.34
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.27
KOG0511	516	consensus Ankyrin repeat protein [General function	97.22
COG5236	493	Uncharacterized conserved protein, contains RING Z	97.18
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	97.15
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.08
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.05
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	97.03
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	96.99
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	96.97
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.86
KOG3039	303	consensus Uncharacterized conserved protein [Funct	96.83
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	96.75
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.72
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	96.66
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.32
COG5152	259	Uncharacterized conserved protein, contains RING a	96.28
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	96.14
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	96.13
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	95.97
KOG3002	299	consensus Zn finger protein [General function pred	95.77
KOG2505	591	consensus Ankyrin repeat protein [General function	95.75
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	95.71
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	95.65
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	95.6
PF04641	260	Rtf2: Rtf2 RING-finger	95.45
KOG2505	591	consensus Ankyrin repeat protein [General function	95.41
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	95.27
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.2
KOG0297	391	consensus TNF receptor-associated factor [Signal t	95.13
COG5175	480	MOT2 Transcriptional repressor [Transcription]	94.57
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	94.52
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	94.49
KOG0825	1134	consensus PHD Zn-finger protein [General function	94.31
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	94.05
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	94.01
KOG1001	674	consensus Helicase-like transcription factor HLTF/	93.98
KOG2660	331	consensus Locus-specific chromosome binding protei	93.82
KOG1002	791	consensus Nucleotide excision repair protein RAD16	93.77
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	93.25
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	93.18
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	92.69
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	92.15
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	91.81
COG5219	1525	Uncharacterized conserved protein, contains RING Z	91.3
PF04710	416	Pellino: Pellino; InterPro: IPR006800 Pellino is i	91.24
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	91.18
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	90.87
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	90.66
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	90.41
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	88.76
KOG3842	429	consensus Adaptor protein Pellino [Signal transduc	88.75
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	88.56
KOG3579	352	consensus Predicted E3 ubiquitin ligase [Posttrans	88.18
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	87.13
KOG4445	368	consensus Uncharacterized conserved protein, conta	84.53
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	83.15
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	83.1
KOG2113	394	consensus Predicted RNA binding protein, contains	83.07
PHA02862	156	5L protein; Provisional	82.84
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	82.82
COG5222	427	Uncharacterized conserved protein, contains RING Z	82.03
KOG4218	475	consensus Nuclear hormone receptor betaFTZ-F1 [Tra	81.48
PHA03096	284	p28-like protein; Provisional	80.67

>PHA02791 ankyrin-like protein; Provisional

Probab=99.97  E-value=7.5e-30  Score=244.26  Aligned_cols=214  Identities=13%  Similarity=0.081  Sum_probs=183.1

Q ss_pred             chhhhchhhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-
Q 010920            4 SLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP-   82 (497)
Q Consensus         4 ~l~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~-   82 (497)
                      .|.+.+...+|..|.||||+|+..|+.+++++|+++|++++..+  |.||||+|+..| +.+++++|+++|++++.++. 
T Consensus        17 ~Lis~~a~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g-~~eiV~lLL~~Gadvn~~d~~   93 (284)
T PHA02791         17 FLSSKDAFKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLE-DTKIVKILLFSGMDDSQFDDK   93 (284)
T ss_pred             HHHhCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCC-CHHHHHHHHHCCCCCCCCCCC
Confidence            46666777789999999999999999999999999999998765  789999999984 59999999999999998766 


Q ss_pred             --------ccCCCHHHHHHHHhCCCCCcccCCCCC-CHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhh
Q 010920           83 --------AKRGLEPTVRLLLSCGANALVRNDDCH-TALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQ  153 (497)
Q Consensus        83 --------~~~g~~~~v~~Ll~~ga~~~~~~~~g~-T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~  153 (497)
                              +..|+.+++++|+++|++++.++..|+ ||||+|+..|+.+++++|++++++..   ....|.|||| +|+.
T Consensus        94 G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~---d~~~g~TpLh-~Aa~  169 (284)
T PHA02791         94 GNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF---DLAILLSCIH-ITIK  169 (284)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccc---ccccCccHHH-HHHH
Confidence                    889999999999999999999998885 89999999999999999999876542   2235899999 9999


Q ss_pred             cCCHHHHHHhhhCCCCCCCCCcccccc-cccCCcCcCHHHHH--HHhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhC
Q 010920          154 LMSRKIWVVVIPCGTANPSKPLRFELV-IYPSLQDVQPRAVI--ALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN  230 (497)
Q Consensus       154 ~~~~~iv~~Ll~~ga~~~~~~~~~~~~-l~~~~~~~~~~~~~--~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~  230 (497)
                      .|+.+++++|+++|++.+..+..+.++ ++.+...++...+.  ...+++++.++..+ ++|      +..+.+++|.++
T Consensus       170 ~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l------~~~e~~~~ll~~  242 (284)
T PHA02791        170 NGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLL------DDAEIAKMIIEK  242 (284)
T ss_pred             cCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccC------CCHHHHHHHHHh
Confidence            999999999999999988877666655 88888877765554  44889999998855 444      677788888755


Q ss_pred             C
Q 010920          231 E  231 (497)
Q Consensus       231 ~  231 (497)
                      -
T Consensus       243 ~  243 (284)
T PHA02791        243 H  243 (284)
T ss_pred             h
Confidence            3

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.6e-30  Score=219.22  Aligned_cols=157  Identities=24%  Similarity=0.248  Sum_probs=113.4

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHc-CCCCCCcCc---------
Q 010920           14 RQSKDELLYQWVIAGDVDAIRALRS-QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL-GANINAYRP---------   82 (497)
Q Consensus        14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~-~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~-ga~~~~~~~---------   82 (497)
                      |.+|+||||+||..|+.++|.+|++ .+..+|.+|..|+||||.||..|+ .++|+.|+.. |+|+|..+.         
T Consensus        35 dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~-~evVk~Ll~r~~advna~tn~G~T~LHyA  113 (226)
T KOG4412|consen   35 DQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGN-DEVVKELLNRSGADVNATTNGGQTCLHYA  113 (226)
T ss_pred             cccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCc-HHHHHHHhcCCCCCcceecCCCcceehhh
Confidence            4499999999999999999999995 567899999999999999999977 7888887776 676666544         


Q ss_pred             ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010920           83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV  162 (497)
Q Consensus        83 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~  162 (497)
                      +..|+.+++++|+++|+.++.+|..|.||||.|+..|..+++++|+..|+.+|  .+|+.|+|||| .|...++.+...+
T Consensus       114 agK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n--~qDk~G~TpL~-~al~e~~~d~a~l  190 (226)
T KOG4412|consen  114 AGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLN--TQDKYGFTPLH-HALAEGHPDVAVL  190 (226)
T ss_pred             hcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCC--cccccCccHHH-HHHhccCchHHHH
Confidence            55566666666666666666666666666666666666666666666666666  56666666666 5555556666666


Q ss_pred             hhhCCCCCCCCC
Q 010920          163 VIPCGTANPSKP  174 (497)
Q Consensus       163 Ll~~ga~~~~~~  174 (497)
                      |+++|++....+
T Consensus       191 LV~~gAd~~~ed  202 (226)
T KOG4412|consen  191 LVRAGADTDRED  202 (226)
T ss_pred             HHHhccceeecc
Confidence            666665554433

>PHA02946 ankyin-like protein; Provisional

Probab=99.97  E-value=5.4e-29  Score=255.21  Aligned_cols=228  Identities=14%  Similarity=0.057  Sum_probs=188.6

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCC-cHHHHHHHHHcCCCCCCc-Cc-------
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSG-LINVAKTLIELGANINAY-RP-------   82 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~-~~~~v~~Ll~~ga~~~~~-~~-------   82 (497)
                      .++..|.||||+|++.|+.++|++||++|+++|.+|..|.||||+|+..+. ..+++++|+++|++++.. +.       
T Consensus        67 ~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~  146 (446)
T PHA02946         67 ETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL  146 (446)
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH
Confidence            356699999999999999999999999999999999999999999988632 479999999999999853 32       


Q ss_pred             -ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcC--CHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcC--CH
Q 010920           83 -AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG--HINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM--SR  157 (497)
Q Consensus        83 -~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g--~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~--~~  157 (497)
                       +..++.+++++|++.|++++.+|..|.||||+|+..+  +.+++++|+++|++++  .+|.+|.|||| +|+..+  +.
T Consensus       147 aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin--~~d~~G~TpLH-~Aa~~~~~~~  223 (446)
T PHA02946        147 ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPS--KPDHDGNTPLH-IVCSKTVKNV  223 (446)
T ss_pred             HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHHcCCCcH
Confidence             6678999999999999999999999999999998755  4689999999999999  89999999999 888765  78


Q ss_pred             HHHHHhhhCCCCCCCCCcccccccccCCcCcCHHH---HHHHhhcCC--------------------CCC-CCCCCChHH
Q 010920          158 KIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRA---VIALWKAKI--------------------DEP-KFHQPDPSL  213 (497)
Q Consensus       158 ~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~---~~~l~~~~~--------------------~~~-~~~g~~pl~  213 (497)
                      +++++|+. |++.+..+..+.++++.+....+...   ++...++.+                    ... ...|.||||
T Consensus       224 ~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh  302 (446)
T PHA02946        224 DIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFK  302 (446)
T ss_pred             HHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHH
Confidence            99999985 89999888889999999887765432   222232221                    111 235779999


Q ss_pred             HHHHhCChhHHHHHHhCCCCHHHHHHHHHhhc
Q 010920          214 TIYDQATKIRYKFASANEGDKHQLQWLDNACR  245 (497)
Q Consensus       214 ~a~~~~~~~~~~~l~~~~~~~~~~~~l~~ac~  245 (497)
                      +|+.+++.+.+++|...+.+.  .+.|+.|..
T Consensus       303 ~Aa~~g~~eivk~Ll~~~~~~--~t~L~~A~~  332 (446)
T PHA02946        303 MAVEVGSIRCVKYLLDNDIIC--EDAMYYAVL  332 (446)
T ss_pred             HHHHcCCHHHHHHHHHCCCcc--ccHHHHHHH
Confidence            999999999999999876543  345655544

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.4e-28  Score=253.44  Aligned_cols=216  Identities=14%  Similarity=0.180  Sum_probs=167.6

Q ss_pred             hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCC--------------
Q 010920           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANIN--------------   78 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~--------------   78 (497)
                      .+..|.||||.|++.|+.++|++|+++|+++|..+..|.||||+|+.. ++.+++++|+++|+++.              
T Consensus        31 ~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~-~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~  109 (434)
T PHA02874         31 SVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKI-GAHDIIKLLIDNGVDTSILPIPCIEKDMIKT  109 (434)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCcchhccCCHHHHHH
Confidence            456899999999999999999999999999999999999999999998 45999999998887643              


Q ss_pred             ---------CcCc---------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccc
Q 010920           79 ---------AYRP---------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE  140 (497)
Q Consensus        79 ---------~~~~---------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~  140 (497)
                               ..+.         +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  ..+
T Consensus       110 ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n--~~~  187 (434)
T PHA02874        110 ILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN--VKD  187 (434)
T ss_pred             HHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC--CCC
Confidence                     2222         66677777888777777777777777888888887777888888887777777  677


Q ss_pred             cCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCCCCCCCCCCChHHHHHHhC-
Q 010920          141 FYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQA-  219 (497)
Q Consensus       141 ~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g~~pl~~a~~~~-  219 (497)
                      ..|.|||| +|+..|+.+++++|+++|++.......+.++++.+...+.....+.+.++.++..+..|.||||+|+..+ 
T Consensus       188 ~~g~tpL~-~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A~~~~~  266 (434)
T PHA02874        188 NNGESPLH-NAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAINPPC  266 (434)
T ss_pred             CCCCCHHH-HHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHHHHhcCC
Confidence            77788888 7777777888888887777766666667777777765555444444466777777777888888877654 


Q ss_pred             ChhHHHHHHhCCC
Q 010920          220 TKIRYKFASANEG  232 (497)
Q Consensus       220 ~~~~~~~l~~~~~  232 (497)
                      ....+++|...+.
T Consensus       267 ~~~iv~~Ll~~ga  279 (434)
T PHA02874        267 DIDIIDILLYHKA  279 (434)
T ss_pred             cHHHHHHHHHCcC
Confidence            5666776665443

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.96  E-value=5.8e-28  Score=251.78  Aligned_cols=226  Identities=16%  Similarity=0.122  Sum_probs=172.3

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-----------
Q 010920           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP-----------   82 (497)
Q Consensus        14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~-----------   82 (497)
                      +..|.||||+|++.|+.++|++|+++|+++|.+|..|.||||+||..|+ .+++++|++.+.+.+....           
T Consensus        34 ~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~-~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~  112 (477)
T PHA02878         34 SLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPN-KLGMKEMIRSINKCSVFYTLVAIKDAFNNR  112 (477)
T ss_pred             cccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCcc-HhHHHHHHHHHhccccccchhhHHHHHHcC
Confidence            3468899999999999999999999999999999999999999999854 8888888776544332110           


Q ss_pred             ---------------------------ccC--CCHHHHHHHHhCCCCCcccCCC-CCCHHHHHHHcCCHHHHHHHHHCCC
Q 010920           83 ---------------------------AKR--GLEPTVRLLLSCGANALVRNDD-CHTALGVARIKGHINVVRAIESHIC  132 (497)
Q Consensus        83 ---------------------------~~~--g~~~~v~~Ll~~ga~~~~~~~~-g~T~Lh~A~~~g~~~~v~~Ll~~g~  132 (497)
                                                 ...  ...+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|+
T Consensus       113 ~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~ga  192 (477)
T PHA02878        113 NVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGA  192 (477)
T ss_pred             CHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCC
Confidence                                       001  1234788888888888888887 8888888888888888888888888


Q ss_pred             cccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcC-cC--HHHHHHHhhcCCCCCCC-CC
Q 010920          133 YFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQD-VQ--PRAVIALWKAKIDEPKF-HQ  208 (497)
Q Consensus       133 ~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~-~~--~~~~~~l~~~~~~~~~~-~g  208 (497)
                      +++  ..|..|.|||| .|+..++.+++++|+++|++.+..+..+.++++.+... ..  ...++...+++++..+. .|
T Consensus       193 d~n--~~d~~g~tpLh-~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g  269 (477)
T PHA02878        193 NVN--IPDKTNNSPLH-HAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILG  269 (477)
T ss_pred             CCC--CcCCCCCCHHH-HHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCC
Confidence            888  78888888888 88888888888888888888887777788888887743 23  33344447778877765 68


Q ss_pred             CChHHHHHHhCChhHHHHHHhCCCC-----HHHHHHHHHhhc
Q 010920          209 PDPSLTIYDQATKIRYKFASANEGD-----KHQLQWLDNACR  245 (497)
Q Consensus       209 ~~pl~~a~~~~~~~~~~~l~~~~~~-----~~~~~~l~~ac~  245 (497)
                      .||||.|  .+....+++|.+.+.+     ....++++.|+.
T Consensus       270 ~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~  309 (477)
T PHA02878        270 LTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVK  309 (477)
T ss_pred             CCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            8888888  3556677777766554     233355555544

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.96  E-value=1.1e-27  Score=253.37  Aligned_cols=60  Identities=12%  Similarity=0.059  Sum_probs=28.5

Q ss_pred             CHHHHHHHHhCCCCCcccCCCCCCHHHHHHH--cCCHHHHHHHHHCCCcccccccccCCCCHHH
Q 010920           87 LEPTVRLLLSCGANALVRNDDCHTALGVARI--KGHINVVRAIESHICYFCGWLREFYGPSFLE  148 (497)
Q Consensus        87 ~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~--~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh  148 (497)
                      +.+++++|+++|++++.+|..|+||||+|+.  .++.+++++|+++|++++  .+|..|.||||
T Consensus       296 ~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN--~kD~~G~TPLH  357 (764)
T PHA02716        296 DISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLN--EPDNIGNTVLH  357 (764)
T ss_pred             CHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCc--cCCCCCCCHHH
Confidence            3444444444555544444445555554432  234444555555555444  44444555554

>PHA03095 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.8e-27  Score=248.25  Aligned_cols=219  Identities=17%  Similarity=0.069  Sum_probs=190.7

Q ss_pred             hhcCCCchHHHHHHHcC---CHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc------
Q 010920           12 QQRQSKDELLYQWVIAG---DVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP------   82 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g---~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~------   82 (497)
                      .++..|.||||+|+..|   +.+++++|++.|+++|.++..|.||||+|+..|++.+++++|+++|++++..+.      
T Consensus        42 ~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpL  121 (471)
T PHA03095         42 FRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPL  121 (471)
T ss_pred             cCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            34668999999999998   999999999999999999999999999999986569999999999999998776      


Q ss_pred             ---c--cCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcC--CHHHHHHHHHCCCcccccccccCCCCHHHHHhhh--
Q 010920           83 ---A--KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG--HINVVRAIESHICYFCGWLREFYGPSFLEALAPQ--  153 (497)
Q Consensus        83 ---~--~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g--~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~--  153 (497)
                         +  ..++.+++++|+++|++++..|..|.||||+|+..+  +.+++++|+++|++++  ..|..|.|||| .++.  
T Consensus       122 h~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~--~~d~~g~t~Lh-~~~~~~  198 (471)
T PHA03095        122 HVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVY--AVDDRFRSLLH-HHLQSF  198 (471)
T ss_pred             HHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHHHC
Confidence               3  456889999999999999999999999999998876  5789999999999998  67999999999 6654  


Q ss_pred             cCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCH----HHHHHHhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHh
Q 010920          154 LMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQP----RAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA  229 (497)
Q Consensus       154 ~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~----~~~~~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~  229 (497)
                      .+..+++++|+.+|++.+..+..+.+++|.+...+..    ...+...+.+++..+..|.||||+|+..++...+++|..
T Consensus       199 ~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~  278 (471)
T PHA03095        199 KPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIA  278 (471)
T ss_pred             CCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            4678999999999999988888899999998876653    223444788999999999999999999999999999887


Q ss_pred             CCCC
Q 010920          230 NEGD  233 (497)
Q Consensus       230 ~~~~  233 (497)
                      .+.+
T Consensus       279 ~gad  282 (471)
T PHA03095        279 LGAD  282 (471)
T ss_pred             cCCC
Confidence            6554

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.95  E-value=2.1e-27  Score=248.47  Aligned_cols=216  Identities=18%  Similarity=0.153  Sum_probs=162.7

Q ss_pred             hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHH-----HHHhCCcHHHHHHHHHcCCCCCCcCc-----
Q 010920           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIV-----ACMDSGLINVAKTLIELGANINAYRP-----   82 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~-----Aa~~g~~~~~v~~Ll~~ga~~~~~~~-----   82 (497)
                      ++..|.||||+|++.|+.++|++|+++|++++..+..|.||||+     |+.. ++.+++++|+++|++++..+.     
T Consensus        31 ~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~-~~~~iv~~Ll~~ga~i~~~d~~g~tp  109 (480)
T PHA03100         31 SYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLT-DVKEIVKLLLEYGANVNAPDNNGITP  109 (480)
T ss_pred             hhcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhh-chHHHHHHHHHCCCCCCCCCCCCCch
Confidence            45678888888888888888888888888888888788888888     8876 448888888888888766554     


Q ss_pred             ----c--cCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcC--CHHHHHHHHHCCCcccccccccCCCCHHHHHhhhc
Q 010920           83 ----A--KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG--HINVVRAIESHICYFCGWLREFYGPSFLEALAPQL  154 (497)
Q Consensus        83 ----~--~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g--~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~  154 (497)
                          +  ..|+.+++++|+++|++++..+..|.||||+|+..|  +.+++++|+++|++++  .++..|.|||| +|+..
T Consensus       110 L~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din--~~d~~g~tpL~-~A~~~  186 (480)
T PHA03100        110 LLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDIN--AKNRYGYTPLH-IAVEK  186 (480)
T ss_pred             hhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcc--cccCCCCCHHH-HHHHh
Confidence                5  677888888888888888888888888888888888  7888888888888887  67778888888 78888


Q ss_pred             CCHHHHHHhhhCCCCCCCCCccc------ccccccCCcCcC--HHH--HHHHhhcCCCCCCCCCCChHHHHHHhCChhHH
Q 010920          155 MSRKIWVVVIPCGTANPSKPLRF------ELVIYPSLQDVQ--PRA--VIALWKAKIDEPKFHQPDPSLTIYDQATKIRY  224 (497)
Q Consensus       155 ~~~~iv~~Ll~~ga~~~~~~~~~------~~~l~~~~~~~~--~~~--~~~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~  224 (497)
                      |+.+++++|+++|++.......+      .++++.+...+.  ...  .+...+++++..+..|.||||+|+..++...+
T Consensus       187 ~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv  266 (480)
T PHA03100        187 GNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFV  266 (480)
T ss_pred             CCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence            88888888888887766554434      666666665555  333  33336677777777788888888877777777


Q ss_pred             HHHHhCCC
Q 010920          225 KFASANEG  232 (497)
Q Consensus       225 ~~l~~~~~  232 (497)
                      ++|...+.
T Consensus       267 ~~Ll~~ga  274 (480)
T PHA03100        267 KYLLDLGA  274 (480)
T ss_pred             HHHHHcCC
Confidence            77776554

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.95  E-value=2.1e-27  Score=248.47  Aligned_cols=222  Identities=17%  Similarity=0.136  Sum_probs=204.1

Q ss_pred             hcCCCchHHHH-----HHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHH--HhCCcHHHHHHHHHcCCCCCCcCc---
Q 010920           13 QRQSKDELLYQ-----WVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVAC--MDSGLINVAKTLIELGANINAYRP---   82 (497)
Q Consensus        13 ~~~~G~T~Lh~-----Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa--~~g~~~~~v~~Ll~~ga~~~~~~~---   82 (497)
                      .+..|.||||+     |+..|+.+++++|+++|++++..|..|.||||+|+  .. ++.+++++|+++|++++..+.   
T Consensus        64 ~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~-~~~~iv~~Ll~~g~~~~~~~~~g~  142 (480)
T PHA03100         64 STKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKS-NSYSIVEYLLDNGANVNIKNSDGE  142 (480)
T ss_pred             ccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhccc-ChHHHHHHHHHcCCCCCccCCCCC
Confidence            45689999999     99999999999999999999999999999999999  87 559999999999999988765   


Q ss_pred             ------ccCC--CHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCC------CCHHH
Q 010920           83 ------AKRG--LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYG------PSFLE  148 (497)
Q Consensus        83 ------~~~g--~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G------~T~Lh  148 (497)
                            +..|  +.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++  ..+..|      .||||
T Consensus       143 t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~--~~~~~~~~~~~~~t~l~  220 (480)
T PHA03100        143 NLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADIN--AGDIETLLFTIFETPLH  220 (480)
T ss_pred             cHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCcc--CCCCCCCcHHHHHhHHH
Confidence                  6778  9999999999999999999999999999999999999999999999998  788888      89999


Q ss_pred             HHhhhcCC--HHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHH--HhhcCCCCCCCCCCChHHHHHHhCChhHH
Q 010920          149 ALAPQLMS--RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIA--LWKAKIDEPKFHQPDPSLTIYDQATKIRY  224 (497)
Q Consensus       149 ~~A~~~~~--~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~~~~g~~pl~~a~~~~~~~~~  224 (497)
                       .|+..++  .+++++|+++|++.+..+..+.++++.+...+....+..  ..+++++..+..|.||+++|+..+....+
T Consensus       221 -~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv  299 (480)
T PHA03100        221 -IAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIF  299 (480)
T ss_pred             -HHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHH
Confidence             8999999  999999999999998888889999999998777655443  48889999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHH
Q 010920          225 KFASANEGDKHQLQ  238 (497)
Q Consensus       225 ~~l~~~~~~~~~~~  238 (497)
                      +++...+.+...+.
T Consensus       300 ~~Ll~~g~~i~~i~  313 (480)
T PHA03100        300 KLLLNNGPSIKTII  313 (480)
T ss_pred             HHHHhcCCCHHHHH
Confidence            99999988876544

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.95  E-value=3.7e-27  Score=241.62  Aligned_cols=216  Identities=17%  Similarity=0.041  Sum_probs=193.5

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccCCC
Q 010920           17 KDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKRGL   87 (497)
Q Consensus        17 G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~g~   87 (497)
                      .+++||.|++.|+.+++++|+++|+++|.++..|.||||+|+..| +.+++++|+++|++++..+.         +..|+
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~-~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~   80 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFR-DSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGD   80 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcC-CHHHHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence            578999999999999999999999999999999999999999985 59999999999999887643         88999


Q ss_pred             HHHHHHHHhCCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhC
Q 010920           88 EPTVRLLLSCGANAL-VRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC  166 (497)
Q Consensus        88 ~~~v~~Ll~~ga~~~-~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~  166 (497)
                      .+++++|++.|++++ ..+..|.||||+|+..|+.+++++|+++|++++  ..+..|.|||| +|+..|+.+++++|+++
T Consensus        81 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~--~~~~~g~tpLh-~A~~~~~~~~v~~Ll~~  157 (413)
T PHA02875         81 VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPD--IPNTDKFSPLH-LAVMMGDIKGIELLIDH  157 (413)
T ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHHHhc
Confidence            999999999998764 456789999999999999999999999999999  89999999999 99999999999999999


Q ss_pred             CCCCCCCCcccccccccCCcCcCHHHH--HHHhhcCCCCCCCCCC-ChHHHHHHhCChhHHHHHHhCCCCHHH
Q 010920          167 GTANPSKPLRFELVIYPSLQDVQPRAV--IALWKAKIDEPKFHQP-DPSLTIYDQATKIRYKFASANEGDKHQ  236 (497)
Q Consensus       167 ga~~~~~~~~~~~~l~~~~~~~~~~~~--~~l~~~~~~~~~~~g~-~pl~~a~~~~~~~~~~~l~~~~~~~~~  236 (497)
                      |++.+..+..+.++++.+...+....+  +...+++++..+..|. +|+++|+..+....+++|...+.+...
T Consensus       158 g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~  230 (413)
T PHA02875        158 KACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI  230 (413)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcch
Confidence            999888888899999999988776554  4448889998888775 788889999999999999988776543

>PHA03095 ankyrin-like protein; Provisional

Probab=99.95  E-value=7e-27  Score=243.87  Aligned_cols=223  Identities=18%  Similarity=0.159  Sum_probs=197.0

Q ss_pred             hcCCCchHHHHHHHcC-CHHHHHHHHHcCCCccccCCCCChHHHHHHHhC-CcHHHHHHHHHcCCCCCCcCc--------
Q 010920           13 QRQSKDELLYQWVIAG-DVDAIRALRSQGASLEWMDKEGKTPLIVACMDS-GLINVAKTLIELGANINAYRP--------   82 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~g-~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g-~~~~~v~~Ll~~ga~~~~~~~--------   82 (497)
                      ++..|.||||+|+..| +.+++++|+++|+++|.+|..|.||||+|+... .+.+++++|+++|++++..+.        
T Consensus        79 ~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~  158 (471)
T PHA03095         79 PERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAV  158 (471)
T ss_pred             CCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHH
Confidence            4559999999999999 599999999999999999999999999999421 358999999999999998765        


Q ss_pred             ---ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHc--CCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCH
Q 010920           83 ---AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIK--GHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSR  157 (497)
Q Consensus        83 ---~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~--g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~  157 (497)
                         ...+..+++++|+++|++++..|..|.||||+|+..  ++.+++++|+++|++++  .+|..|.|||| +|+..++.
T Consensus       159 a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~--~~d~~g~tpLh-~Aa~~~~~  235 (471)
T PHA03095        159 LLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPA--ATDMLGNTPLH-SMATGSSC  235 (471)
T ss_pred             HHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHhcCCc
Confidence               234578999999999999999999999999999875  77899999999999999  89999999999 88888864


Q ss_pred             --HHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHH--HHhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCCC
Q 010920          158 --KIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVI--ALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGD  233 (497)
Q Consensus       158 --~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~  233 (497)
                        .+++.|+..|++.+..+..+.+++|.+...+....+.  ...+++++..+..|.|||+.|+.+++...++++.....+
T Consensus       236 ~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~  315 (471)
T PHA03095        236 KRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPS  315 (471)
T ss_pred             hHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCC
Confidence              6888999999999998888999999999876665544  448899999999999999999999999999999988777


Q ss_pred             HHHHH
Q 010920          234 KHQLQ  238 (497)
Q Consensus       234 ~~~~~  238 (497)
                      .....
T Consensus       316 ~~~~~  320 (471)
T PHA03095        316 AETVA  320 (471)
T ss_pred             HHHHH
Confidence            65443

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=8.4e-28  Score=202.81  Aligned_cols=195  Identities=18%  Similarity=0.159  Sum_probs=158.5

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCC-CccccCC-CCChHHHHHHHhCCcHHHHHHHHH-cCCCCCCcCc---------c
Q 010920           16 SKDELLYQWVIAGDVDAIRALRSQGA-SLEWMDK-EGKTPLIVACMDSGLINVAKTLIE-LGANINAYRP---------A   83 (497)
Q Consensus        16 ~G~T~Lh~Aa~~g~~~~v~~Ll~~ga-~~n~~d~-~G~TpLh~Aa~~g~~~~~v~~Ll~-~ga~~~~~~~---------~   83 (497)
                      .+.++.+.+++.....-|+.|++... .+|.++. +|+|||||||.. +|.+++++|++ .+..+|.+|.         +
T Consensus         2 e~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~-g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~   80 (226)
T KOG4412|consen    2 EYASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSF-GHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAA   80 (226)
T ss_pred             CccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeec-CchhHHHHHHhcCCCCCCCccccCCchhhhhh
Confidence            35678899999998889999988765 7788877 899999999998 66999999995 4777777765         7


Q ss_pred             cCCCHHHHHHHHhC-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010920           84 KRGLEPTVRLLLSC-GANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV  162 (497)
Q Consensus        84 ~~g~~~~v~~Ll~~-ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~  162 (497)
                      ..|+.++|+.|+.. |+++|..+..|.|+||||+..|..+++++|+++|+.++  .+|..|.|||| -|+.-|..+++++
T Consensus        81 s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~--~kD~~~qtplH-RAAavGklkvie~  157 (226)
T KOG4412|consen   81 SNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIR--IKDKQGQTPLH-RAAAVGKLKVIEY  157 (226)
T ss_pred             hcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCc--ccccccCchhH-HHHhccchhhHHH
Confidence            77888888888877 88888888888888888888888888888888888888  88888888888 8888888888888


Q ss_pred             hhhCCCCCCCCCcccccccccCCcCcCHH--HHHHHhhcCCCCCCCCCCChHHHH
Q 010920          163 VIPCGTANPSKPLRFELVIYPSLQDVQPR--AVIALWKAKIDEPKFHQPDPSLTI  215 (497)
Q Consensus       163 Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~--~~~~l~~~~~~~~~~~g~~pl~~a  215 (497)
                      |+..|+..+.++..+.+++|++.-+++..  .++...++++...|+.| ||+-.+
T Consensus       158 Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a  211 (226)
T KOG4412|consen  158 LISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIA  211 (226)
T ss_pred             HHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHH
Confidence            88888888887777888888875555443  33444777777777777 765533

>PHA02791 ankyrin-like protein; Provisional

Probab=99.95  E-value=8.1e-27  Score=223.35  Aligned_cols=201  Identities=16%  Similarity=0.033  Sum_probs=177.2

Q ss_pred             cCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-------ccCCCHHHHHHHHhCCC
Q 010920           27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP-------AKRGLEPTVRLLLSCGA   99 (497)
Q Consensus        27 ~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~-------~~~g~~~~v~~Ll~~ga   99 (497)
                      .++.+++++|+++|++  .+|.+|.||||+|+..| +.+++++|+++|++++..+.       +..|+.+++++|+++|+
T Consensus         9 ~~~~~~~~~Lis~~a~--~~D~~G~TpLh~Aa~~g-~~eiv~~Ll~~ga~~n~~d~~TpLh~Aa~~g~~eiV~lLL~~Ga   85 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF--KADVHGHSALYYAIADN-NVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGM   85 (284)
T ss_pred             cCHHHHHHHHHhCCCC--CCCCCCCcHHHHHHHcC-CHHHHHHHHHCcCCCcCCCCCCHHHHHHHCCCHHHHHHHHHCCC
Confidence            4678999999999885  58999999999999985 59999999999999887765       78899999999999999


Q ss_pred             CCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCC-CHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccc
Q 010920          100 NALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGP-SFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFE  178 (497)
Q Consensus       100 ~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~-T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  178 (497)
                      +++.+|..|.||||+|+..|+.+++++|+++|++++  .++..|+ |||| +|+..++.+++++|++++.+..... .+.
T Consensus        86 dvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin--~~~~~g~~TpL~-~Aa~~g~~eivk~LL~~~~~~~d~~-~g~  161 (284)
T PHA02791         86 DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM--FYGKTGWKTSFY-HAVMLNDVSIVSYFLSEIPSTFDLA-ILL  161 (284)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC--ccCCCCCcHHHH-HHHHcCCHHHHHHHHhcCCcccccc-cCc
Confidence            999999999999999999999999999999999998  7888885 8999 9999999999999999875432111 367


Q ss_pred             cccccCCcCcCHHHHHH--HhhcCCCCCCCCCCCh-HHHHHHhCChhHHHHHHhCCCCH
Q 010920          179 LVIYPSLQDVQPRAVIA--LWKAKIDEPKFHQPDP-SLTIYDQATKIRYKFASANEGDK  234 (497)
Q Consensus       179 ~~l~~~~~~~~~~~~~~--l~~~~~~~~~~~g~~p-l~~a~~~~~~~~~~~l~~~~~~~  234 (497)
                      +++|.+...++...+..  ..+++++..+..|.+| ||+|+..++.+.+++|...+.+.
T Consensus       162 TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~i  220 (284)
T PHA02791        162 SCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINI  220 (284)
T ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            99999998888765544  4888999999999987 99999999999999999776653

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.95  E-value=9.5e-27  Score=246.15  Aligned_cols=157  Identities=15%  Similarity=0.151  Sum_probs=135.0

Q ss_pred             hhhhcCCCchHHHHHHHcCC--HHHHHHHHHcCCCccccCCCCChHHHHHH-----------------------------
Q 010920           10 QHQQRQSKDELLYQWVIAGD--VDAIRALRSQGASLEWMDKEGKTPLIVAC-----------------------------   58 (497)
Q Consensus        10 ~~~~~~~G~T~Lh~Aa~~g~--~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa-----------------------------   58 (497)
                      ...+|..|.||||+|++.|+  .++|++|+++|+++|.+|..|+||||+|+                             
T Consensus       205 VN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~  284 (764)
T PHA02716        205 VNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMI  284 (764)
T ss_pred             CCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhh
Confidence            33457799999999999995  58999999999999999999999999763                             


Q ss_pred             --------HhCCcHHHHHHHHHcCCCCCCcCc-----------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHH--
Q 010920           59 --------MDSGLINVAKTLIELGANINAYRP-----------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARI--  117 (497)
Q Consensus        59 --------~~g~~~~~v~~Ll~~ga~~~~~~~-----------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~--  117 (497)
                              .. ++.+++++|+++|++++.++.           ...++.+++++|+++|++++.+|..|+||||+|+.  
T Consensus       285 L~~~i~AA~~-g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~l  363 (764)
T PHA02716        285 LHSYITLARN-IDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSML  363 (764)
T ss_pred             hHHHHHHHHc-CCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhh
Confidence                    33 448999999999999988765           23568899999999999999999999999999875  


Q ss_pred             ------------cCCHHHHHHHHHCCCcccccccccCCCCHHHHH---hhhcCCHHHHHHhhhCCCC
Q 010920          118 ------------KGHINVVRAIESHICYFCGWLREFYGPSFLEAL---APQLMSRKIWVVVIPCGTA  169 (497)
Q Consensus       118 ------------~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~---A~~~~~~~iv~~Ll~~ga~  169 (497)
                                  .++.+++++|+++|++++  .+|..|.||||.+   |...++.+++++|++.|+.
T Consensus       364 av~~~ld~~~~~~~~~eVVklLL~~GADIn--~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~  428 (764)
T PHA02716        364 SVVNILDPETDNDIRLDVIQCLISLGADIT--AVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVL  428 (764)
T ss_pred             hhhccccccccccChHHHHHHHHHCCCCCC--CcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcch
Confidence                        368999999999999999  8999999999932   2335779999999998754

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.95  E-value=3.8e-26  Score=235.40  Aligned_cols=211  Identities=19%  Similarity=0.134  Sum_probs=183.0

Q ss_pred             hcCCCchHHHHHHHcCCHHHHHHHHHcCC-----------------------CccccCCCCChHHHHHHHhCCcHHHHHH
Q 010920           13 QRQSKDELLYQWVIAGDVDAIRALRSQGA-----------------------SLEWMDKEGKTPLIVACMDSGLINVAKT   69 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga-----------------------~~n~~d~~G~TpLh~Aa~~g~~~~~v~~   69 (497)
                      .+..|.||||+|+..|+.+++++|+++|+                       +++.++..|.||||+|+..|+ .+++++
T Consensus        64 ~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~-~~~v~~  142 (434)
T PHA02874         64 INTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGD-LESIKM  142 (434)
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCC-HHHHHH
Confidence            45689999999999999999999987764                       567788999999999999854 999999


Q ss_pred             HHHcCCCCCCcCc---------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccc
Q 010920           70 LIELGANINAYRP---------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE  140 (497)
Q Consensus        70 Ll~~ga~~~~~~~---------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~  140 (497)
                      |+++|++++..+.         +..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++  .++
T Consensus       143 Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~--~~~  220 (434)
T PHA02874        143 LFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIM--NKC  220 (434)
T ss_pred             HHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCc--CCC
Confidence            9999999998765         78899999999999999999999999999999999999999999999999998  899


Q ss_pred             cCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCc---CHHHHHHHhhcCCCCCCCCCCChHHHHHH
Q 010920          141 FYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDV---QPRAVIALWKAKIDEPKFHQPDPSLTIYD  217 (497)
Q Consensus       141 ~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~---~~~~~~~l~~~~~~~~~~~g~~pl~~a~~  217 (497)
                      ..|.|||| .|+..+. +.+++|+ .|++.+..+..+.+++|.+....   .+..++...+++++..+..|.|||+.|+.
T Consensus       221 ~~g~TpL~-~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~  297 (434)
T PHA02874        221 KNGFTPLH-NAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFK  297 (434)
T ss_pred             CCCCCHHH-HHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHHHH
Confidence            99999999 8888765 5666666 58888888888999999998654   34555566899999999999999999998


Q ss_pred             hC-ChhHHHHHHh
Q 010920          218 QA-TKIRYKFASA  229 (497)
Q Consensus       218 ~~-~~~~~~~l~~  229 (497)
                      .. ....++.+..
T Consensus       298 ~~~~~~~ik~ll~  310 (434)
T PHA02874        298 YINKDPVIKDIIA  310 (434)
T ss_pred             hCCccHHHHHHHH
Confidence            76 4445555553

>PHA02946 ankyin-like protein; Provisional

Probab=99.94  E-value=5.5e-26  Score=232.98  Aligned_cols=212  Identities=13%  Similarity=0.073  Sum_probs=180.5

Q ss_pred             CCchHHHHHHH--cCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------cc
Q 010920           16 SKDELLYQWVI--AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AK   84 (497)
Q Consensus        16 ~G~T~Lh~Aa~--~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~   84 (497)
                      .+.++||.++.  .++.++|++|+++|+++|.+|.+|.||||+|+..| +.++|++|+++|++++.++.         +.
T Consensus        36 g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g-~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~  114 (446)
T PHA02946         36 GNYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKIN-NNRIVAMLLTHGADPNACDKQHKTPLYYLSG  114 (446)
T ss_pred             CCChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcC-CHHHHHHHHHCcCCCCCCCCCCCCHHHHHHH
Confidence            45799998774  45789999999999999999999999999999985 59999999999999998776         23


Q ss_pred             C--CCHHHHHHHHhCCCCCcc-cCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcC--CHHH
Q 010920           85 R--GLEPTVRLLLSCGANALV-RNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM--SRKI  159 (497)
Q Consensus        85 ~--g~~~~v~~Ll~~ga~~~~-~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~--~~~i  159 (497)
                      .  +..+++++|+++|++++. .|..|.|||| |+..|+.+++++|++.|++++  .+|..|.|||| .|+..+  +.++
T Consensus       115 ~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~--~~d~~G~t~Lh-~A~~~~~~~~~~  190 (446)
T PHA02946        115 TDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEAR--IVDKFGKNHIH-RHLMSDNPKAST  190 (446)
T ss_pred             cCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhcccccc--ccCCCCCCHHH-HHHHhcCCCHHH
Confidence            3  357899999999999995 6899999997 667899999999999999999  89999999999 666544  4689


Q ss_pred             HHHhhhCCCCCCCCCcccccccccCCcCc--CHHHH-HHHhhcCCCCCCCCCCChHHHHHHhCC-hhHHHHHHhCCC
Q 010920          160 WVVVIPCGTANPSKPLRFELVIYPSLQDV--QPRAV-IALWKAKIDEPKFHQPDPSLTIYDQAT-KIRYKFASANEG  232 (497)
Q Consensus       160 v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~--~~~~~-~~l~~~~~~~~~~~g~~pl~~a~~~~~-~~~~~~l~~~~~  232 (497)
                      +++|+++|++.+..+..+.+++|.+...+  ....+ +.+.+++++..+..|.||||+|+..++ ...++++...+.
T Consensus       191 v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~  267 (446)
T PHA02946        191 ISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLPSTDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSN  267 (446)
T ss_pred             HHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCC
Confidence            99999999999998888999999998654  33333 223588999999999999999999887 466777766544

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.94  E-value=4.3e-26  Score=247.87  Aligned_cols=218  Identities=14%  Similarity=0.032  Sum_probs=192.5

Q ss_pred             hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-----ccCCC
Q 010920           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP-----AKRGL   87 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~-----~~~g~   87 (497)
                      +|..|.||||+||+.|+.++|++|+++|++++..+..|.||||+|+.. ++.+++++|++.+.+++..+.     +..++
T Consensus       174 ~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~-~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~  252 (682)
T PHA02876        174 KDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDS-KNIDTIKAIIDNRSNINKNDLSLLKAIRNED  252 (682)
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHc-CCHHHHHHHHhcCCCCCCCcHHHHHHHHcCC
Confidence            456899999999999999999999999999999999999999999997 459999999999888876554     77889


Q ss_pred             HHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCH-HHHHHHHHCCCcccccccccCCCCHHHHHhhhcC-CHHHHHHhhh
Q 010920           88 EPTVRLLLSCGANALVRNDDCHTALGVARIKGHI-NVVRAIESHICYFCGWLREFYGPSFLEALAPQLM-SRKIWVVVIP  165 (497)
Q Consensus        88 ~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~-~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~-~~~iv~~Ll~  165 (497)
                      .+++++|++.|++++..+..|.||||+|+..++. +++++|++.|++++  .+|..|.|||| +|+..| ..+++++|+.
T Consensus       253 ~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin--~~d~~g~TpLh-~Aa~~g~~~~~v~~Ll~  329 (682)
T PHA02876        253 LETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVN--AKNIKGETPLY-LMAKNGYDTENIRTLIM  329 (682)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHhCCCHHHHHHHHH
Confidence            9999999999999999999999999999999986 69999999999999  89999999999 888888 5999999999


Q ss_pred             CCCCCCCCCcccccccccCCcCcC---HHHHHHHhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCCCH
Q 010920          166 CGTANPSKPLRFELVIYPSLQDVQ---PRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDK  234 (497)
Q Consensus       166 ~ga~~~~~~~~~~~~l~~~~~~~~---~~~~~~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~~  234 (497)
                      .|++.+..+..+.++++.+...+.   ...++...+++++..+..|.||||+|+..++...+++|...+.+.
T Consensus       330 ~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~  401 (682)
T PHA02876        330 LGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADI  401 (682)
T ss_pred             cCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence            999998888888999998875332   333444588999999999999999999999999999999776553

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.94  E-value=4.5e-26  Score=233.62  Aligned_cols=202  Identities=15%  Similarity=0.074  Sum_probs=174.4

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCc---Cc------
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY---RP------   82 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~---~~------   82 (497)
                      .++..|.||||+|+..|+.+++++|+++|++++..+..+.||||+|+..|+ .+++++|+++|++++..   ++      
T Consensus        30 ~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~-~~~v~~Ll~~~~~~~~~~~~~g~tpL~~  108 (413)
T PHA02875         30 FEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGD-VKAVEELLDLGKFADDVFYKDGMTPLHL  108 (413)
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCC-HHHHHHHHHcCCcccccccCCCCCHHHH
Confidence            345689999999999999999999999999999999999999999999855 99999999999876532   11      


Q ss_pred             -ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 010920           83 -AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV  161 (497)
Q Consensus        83 -~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~  161 (497)
                       +..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..|+.++++
T Consensus       109 A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~--~~d~~g~TpL~-~A~~~g~~eiv~  185 (413)
T PHA02875        109 ATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLD--IEDCCGCTPLI-IAMAKGDIAICK  185 (413)
T ss_pred             HHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC--CCCCCCCCHHH-HHHHcCCHHHHH
Confidence             78899999999999999999999999999999999999999999999999999  89999999999 999999999999


Q ss_pred             HhhhCCCCCCCCCcccc-cccccCCcCcCHHHHHH--HhhcCCCCC---CCCCCChHHHHHH
Q 010920          162 VVIPCGTANPSKPLRFE-LVIYPSLQDVQPRAVIA--LWKAKIDEP---KFHQPDPSLTIYD  217 (497)
Q Consensus       162 ~Ll~~ga~~~~~~~~~~-~~l~~~~~~~~~~~~~~--l~~~~~~~~---~~~g~~pl~~a~~  217 (497)
                      +|+++|++.+..+..+. ++++.+...+....+..  ..+++++..   +..+.+|++.+..
T Consensus       186 ~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~~  247 (413)
T PHA02875        186 MLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMICN  247 (413)
T ss_pred             HHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchHHHHHHHh
Confidence            99999999887665553 66666776666555444  477777654   5567788776654

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.94  E-value=8.5e-26  Score=236.33  Aligned_cols=227  Identities=18%  Similarity=0.166  Sum_probs=181.9

Q ss_pred             CCCchHHHHHHHc--CCHHHHHHHHHcCCCccccCCCCChHHHHHHHhC-----CcHHHHHHHHHcCCCCCCcCc-----
Q 010920           15 QSKDELLYQWVIA--GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDS-----GLINVAKTLIELGANINAYRP-----   82 (497)
Q Consensus        15 ~~G~T~Lh~Aa~~--g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g-----~~~~~v~~Ll~~ga~~~~~~~-----   82 (497)
                      ..|.||||+++..  ++.++|++|+++|+++|.++ .+.||||.|+.++     ++.+++++|+++|+++|..+.     
T Consensus        33 ~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tp  111 (494)
T PHA02989         33 YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSP  111 (494)
T ss_pred             cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcH
Confidence            4689999876654  37999999999999999887 5799999998753     247899999999999998875     


Q ss_pred             -------ccCCCHHHHHHHHhCCCCC-cccCCCCCCHHHHHHHc--CCHHHHHHHHHCCCcccccc-cccCCCCHHHHHh
Q 010920           83 -------AKRGLEPTVRLLLSCGANA-LVRNDDCHTALGVARIK--GHINVVRAIESHICYFCGWL-REFYGPSFLEALA  151 (497)
Q Consensus        83 -------~~~g~~~~v~~Ll~~ga~~-~~~~~~g~T~Lh~A~~~--g~~~~v~~Ll~~g~~i~~~~-~~~~G~T~Lh~~A  151 (497)
                             ...++.+++++|+++|+++ +.+|..|.||||+|+..  ++.+++++|+++|++++  . .+..|.|||| .|
T Consensus       112 L~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~--~~~~~~g~tpL~-~a  188 (494)
T PHA02989        112 IVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLF--EKTSLYGLTPMN-IY  188 (494)
T ss_pred             HHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc--ccccccCCChHH-HH
Confidence                   2347899999999999999 88999999999998764  68999999999999998  5 6889999999 77


Q ss_pred             hhc----CCHHHHHHhhhCCCCCCCCCcccccccccCCcCc------CHHHH-HHHhhcCCCCCCCCCCChHHHHHHhCC
Q 010920          152 PQL----MSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDV------QPRAV-IALWKAKIDEPKFHQPDPSLTIYDQAT  220 (497)
Q Consensus       152 ~~~----~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~------~~~~~-~~l~~~~~~~~~~~g~~pl~~a~~~~~  220 (497)
                      +..    ++.+++++|+++|++.+..+..+.++++.+....      ....+ +.+.+++++..+..|.||||+|+..++
T Consensus       189 ~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~  268 (494)
T PHA02989        189 LRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDN  268 (494)
T ss_pred             HhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcC
Confidence            654    4899999999999998877755666665433211      11111 234678999999999999999999999


Q ss_pred             hhHHHHHHhCCCCHH-----HHHHHHHhhc
Q 010920          221 KIRYKFASANEGDKH-----QLQWLDNACR  245 (497)
Q Consensus       221 ~~~~~~l~~~~~~~~-----~~~~l~~ac~  245 (497)
                      .+.+++|.+.+.+..     ..++|+.|+.
T Consensus       269 ~~~v~~LL~~Gadin~~d~~G~TpL~~A~~  298 (494)
T PHA02989        269 YEAFNYLLKLGDDIYNVSKDGDTVLTYAIK  298 (494)
T ss_pred             HHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            999999997766532     3355555554

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.94  E-value=1.2e-26  Score=231.54  Aligned_cols=198  Identities=22%  Similarity=0.192  Sum_probs=182.4

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc----------ccC
Q 010920           17 KDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP----------AKR   85 (497)
Q Consensus        17 G~T~Lh~Aa~~g~~~~v~~Ll~~-ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~----------~~~   85 (497)
                      -.+-++.|++.|.++.|+.|++. |.+++..|.+|.|+|||||.+ |.++++++|+++||++|..++          +++
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiN-Nrl~v~r~li~~gadvn~~gG~l~stPLHWAar~  122 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAIN-NRLDVARYLISHGADVNAIGGVLGSTPLHWAARN  122 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHc-CcHHHHHHHHHcCCCccccCCCCCCCcchHHHHc
Confidence            35678999999999999999998 999999999999999999998 559999999999999999885          899


Q ss_pred             CCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhh
Q 010920           86 GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIP  165 (497)
Q Consensus        86 g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~  165 (497)
                      |+..+|.+|+++||+++.+|.+|.|+||+|++.|+.-+|-+|+.+|++++  .+|.+|+|||| +|+..+....+..|+.
T Consensus       123 G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d--~~D~~grTpLm-wAaykg~~~~v~~LL~  199 (600)
T KOG0509|consen  123 GHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADID--LRDNNGRTPLM-WAAYKGFALFVRRLLK  199 (600)
T ss_pred             CcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCC--CcCCCCCCHHH-HHHHhcccHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999  99999999999 8999999888999999


Q ss_pred             CCCCCCCCC-cccccccccCCcCcCHHH--HHHHhhcCCCCCCCCCCChHHHHHHh
Q 010920          166 CGTANPSKP-LRFELVIYPSLQDVQPRA--VIALWKAKIDEPKFHQPDPSLTIYDQ  218 (497)
Q Consensus       166 ~ga~~~~~~-~~~~~~l~~~~~~~~~~~--~~~l~~~~~~~~~~~g~~pl~~a~~~  218 (497)
                      .|+....++ .++.+++|.+...++...  ++...+++.+..+.+|.||+.+|..+
T Consensus       200 f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  200 FGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             hcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            999988877 789999999887776544  44447789999999999999999887

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.94  E-value=1.9e-25  Score=242.85  Aligned_cols=215  Identities=17%  Similarity=0.090  Sum_probs=180.5

Q ss_pred             hcCCCchHHHHHHHcCCH-HHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------
Q 010920           13 QRQSKDELLYQWVIAGDV-DAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------   82 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~g~~-~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------   82 (497)
                      ++..|.||||+|+..|+. +++++|++.|++++.+|..|.||||+|+..|...+++++|+..|++++..+.         
T Consensus       269 ~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A  348 (682)
T PHA02876        269 IDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQA  348 (682)
T ss_pred             CCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHH
Confidence            456899999999999986 5889999999999999999999999999986458999999999999988765         


Q ss_pred             cc-CCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhc-CCHHHH
Q 010920           83 AK-RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL-MSRKIW  160 (497)
Q Consensus        83 ~~-~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~-~~~~iv  160 (497)
                      +. .++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++  ..+..|.|||| +|+.. +...++
T Consensus       349 ~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~--~~~~~g~T~Lh-~A~~~~~~~~~v  425 (682)
T PHA02876        349 STLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIE--ALSQKIGTALH-FALCGTNPYMSV  425 (682)
T ss_pred             HHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc--ccCCCCCchHH-HHHHcCCHHHHH
Confidence            23 467889999999999999999999999999999999999999999999998  78899999999 66554 446778


Q ss_pred             HHhhhCCCCCCCCCcccccccccCCcCc---CHHHHHHHhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCC
Q 010920          161 VVVIPCGTANPSKPLRFELVIYPSLQDV---QPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEG  232 (497)
Q Consensus       161 ~~Ll~~ga~~~~~~~~~~~~l~~~~~~~---~~~~~~~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~  232 (497)
                      ++|+++|++.+..+..+.++++.+...+   .+..++...+++++..+..|.||++.|+....  .++++...+.
T Consensus       426 k~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~~~--~v~~Ll~~~a  498 (682)
T PHA02876        426 KTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYHG--IVNILLHYGA  498 (682)
T ss_pred             HHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCC--HHHHHHHCCC
Confidence            9999999999888888999999988644   34455556889999999999999999987653  4555554443

>PHA02730 ankyrin-like protein; Provisional

Probab=99.94  E-value=2.4e-25  Score=231.25  Aligned_cols=218  Identities=13%  Similarity=0.019  Sum_probs=158.6

Q ss_pred             hhcCCCchHHHHHHHcC---CHHHHHHHHHcCCCccccCCCCChHHHHHHHhC-CcHHHHHHHHHcCCCC--CCcCc---
Q 010920           12 QQRQSKDELLYQWVIAG---DVDAIRALRSQGASLEWMDKEGKTPLIVACMDS-GLINVAKTLIELGANI--NAYRP---   82 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g---~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g-~~~~~v~~Ll~~ga~~--~~~~~---   82 (497)
                      ++|..|.||||+|+..|   +.++|++||++||+++.+|..|.||||+|+..+ ++.++|++|+++|+++  +..+.   
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d  115 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNIND  115 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCC
Confidence            45678999999999997   599999999999999999999999999999975 2689999999886533  32220   


Q ss_pred             --------------------------------------------------------------------------------
Q 010920           83 --------------------------------------------------------------------------------   82 (497)
Q Consensus        83 --------------------------------------------------------------------------------   82 (497)
                                                                                                      
T Consensus       116 ~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~  195 (672)
T PHA02730        116 FDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDR  195 (672)
T ss_pred             chHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCc
Confidence                                                                                            


Q ss_pred             --------------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHH--HHHcCCHHHHHHHHH-----------------
Q 010920           83 --------------AKRGLEPTVRLLLSCGANALVRNDDCHTALGV--ARIKGHINVVRAIES-----------------  129 (497)
Q Consensus        83 --------------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~--A~~~g~~~~v~~Ll~-----------------  129 (497)
                                    ...++.+++++|+++||++|.+|.+|.||||+  |...|+.++|++|++                 
T Consensus       196 c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~  275 (672)
T PHA02730        196 CKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIR  275 (672)
T ss_pred             cchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhh
Confidence                          11235677888888888888888889999984  444455666666655                 


Q ss_pred             ---------------CCC--------------------------------------------------------------
Q 010920          130 ---------------HIC--------------------------------------------------------------  132 (497)
Q Consensus       130 ---------------~g~--------------------------------------------------------------  132 (497)
                                     +|+                                                              
T Consensus       276 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~  355 (672)
T PHA02730        276 GVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGD  355 (672)
T ss_pred             hhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCC
Confidence                           343                                                              


Q ss_pred             ---------------cccccccccCCCCHHHHHhhhcCC----HHHHHHhhhCCC--CCCCCCccccccccc---CCcCc
Q 010920          133 ---------------YFCGWLREFYGPSFLEALAPQLMS----RKIWVVVIPCGT--ANPSKPLRFELVIYP---SLQDV  188 (497)
Q Consensus       133 ---------------~i~~~~~~~~G~T~Lh~~A~~~~~----~~iv~~Ll~~ga--~~~~~~~~~~~~l~~---~~~~~  188 (497)
                                     +++  . +..|.|||| +|+..++    .+++++|+++|+  +.+..+..+.++++.   +...+
T Consensus       356 ~v~ieIvelLIs~GAdIN--~-k~~G~TpLH-~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n  431 (672)
T PHA02730        356 MVSIPILRCMLDNGATMD--K-TTDNNYPLH-DYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNN  431 (672)
T ss_pred             cCcHHHHHHHHHCCCCCC--c-CCCCCcHHH-HHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhcc
Confidence                           333  2 256788888 6666553    788888888887  355555456666652   11110


Q ss_pred             -----------CHHHHHHHhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCCC
Q 010920          189 -----------QPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGD  233 (497)
Q Consensus       189 -----------~~~~~~~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~  233 (497)
                                 .+..++...+++++.++..|.||||+|+..++...+++|...+.+
T Consensus       432 ~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAd  487 (672)
T PHA02730        432 CGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGAS  487 (672)
T ss_pred             ccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCC
Confidence                       124566668888888888899999999888888888888866554

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.94  E-value=1.6e-26  Score=230.70  Aligned_cols=173  Identities=24%  Similarity=0.188  Sum_probs=158.8

Q ss_pred             hhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccC-CCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-------
Q 010920           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMD-KEGKTPLIVACMDSGLINVAKTLIELGANINAYRP-------   82 (497)
Q Consensus        11 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d-~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~-------   82 (497)
                      .+.|.+|.|+||+||.+++++++++||++|+++|... .-|.||||||+++ +++.+|.+|+++|||++..|.       
T Consensus        72 ~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~-G~~~vv~lLlqhGAdpt~~D~~G~~~lH  150 (600)
T KOG0509|consen   72 NNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARN-GHISVVDLLLQHGADPTLKDKQGLTPLH  150 (600)
T ss_pred             CCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHc-CcHHHHHHHHHcCCCCceecCCCCcHHH
Confidence            4567799999999999999999999999999999998 5688999999999 559999999999999999887       


Q ss_pred             --ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccc-cCCCCHHHHHhhhcCCHHH
Q 010920           83 --AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE-FYGPSFLEALAPQLMSRKI  159 (497)
Q Consensus        83 --~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~-~~G~T~Lh~~A~~~~~~~i  159 (497)
                        +..|+.-.|-+||.+++++|.+|.+|+||||+|+.+|+...++.|+..|+.+.  ..| +.|.|||| +|+..|+.++
T Consensus       151 la~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~--~~d~~~g~TpLH-wa~~~gN~~~  227 (600)
T KOG0509|consen  151 LAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLL--LTDDNHGNTPLH-WAVVGGNLTA  227 (600)
T ss_pred             HHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccccc--ccccccCCchHH-HHHhcCCcce
Confidence              89999999999999999999999999999999999999988999999999998  455 99999999 9999999999


Q ss_pred             HHHhhhCCCCCCCCCcccccccccCCcC
Q 010920          160 WVVVIPCGTANPSKPLRFELVIYPSLQD  187 (497)
Q Consensus       160 v~~Ll~~ga~~~~~~~~~~~~l~~~~~~  187 (497)
                      +.+|++.|++.+.++.++.+++..+.+.
T Consensus       228 v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  228 VKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             EehhhhcCCcccccccCCCCHHHHHHHh
Confidence            9977788888888888888888877644

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.93  E-value=1.7e-25  Score=227.21  Aligned_cols=217  Identities=17%  Similarity=0.075  Sum_probs=142.9

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-----------
Q 010920           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP-----------   82 (497)
Q Consensus        14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~-----------   82 (497)
                      +..+.+|||+|+..|+.++++.|+++|+|+|..|..|.||||+||.. ++.|..+.|++.|+++-..+.           
T Consensus       118 n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~-~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~  196 (929)
T KOG0510|consen  118 NLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARK-NKVEAKKELINKGADPCKSDIDGNFPIHEAAR  196 (929)
T ss_pred             hhhccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHhc-ChHHHHHHHHhcCCCCCcccCcCCchHHHHHH
Confidence            34555555555555555555555555555555555555555555554 445555555555555443322           


Q ss_pred             ------------------------------------ccCCCHHHHHHHHhCCCCC---------------cccCCCCCCH
Q 010920           83 ------------------------------------AKRGLEPTVRLLLSCGANA---------------LVRNDDCHTA  111 (497)
Q Consensus        83 ------------------------------------~~~g~~~~v~~Ll~~ga~~---------------~~~~~~g~T~  111 (497)
                                                          +..|+.++++.+|+.|+..               +..|++|.||
T Consensus       197 s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tp  276 (929)
T KOG0510|consen  197 SGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTP  276 (929)
T ss_pred             hcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCch
Confidence                                                6677777777777766432               3456778888


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhh-CCC-CCCCCCcccccccccCCcCcC
Q 010920          112 LGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIP-CGT-ANPSKPLRFELVIYPSLQDVQ  189 (497)
Q Consensus       112 Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~-~ga-~~~~~~~~~~~~l~~~~~~~~  189 (497)
                      ||+|++.|+.++++.|+..|++++  .++.++.|||| .|+..|...+++-|++ .+. ..+..++++.+++|.+.+.++
T Consensus       277 LH~a~r~G~~~svd~Ll~~Ga~I~--~kn~d~~spLH-~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH  353 (929)
T KOG0510|consen  277 LHYAARQGGPESVDNLLGFGASIN--SKNKDEESPLH-FAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGH  353 (929)
T ss_pred             HHHHHHcCChhHHHHHHHcCCccc--ccCCCCCCchH-HHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCH
Confidence            888888888888888888888887  77788888888 7778888888887777 332 245556677788888777777


Q ss_pred             HHHHHHH--hhcCCC---CCCCCCCChHHHHHHhCChhHHHHHHhCCCCH
Q 010920          190 PRAVIAL--WKAKID---EPKFHQPDPSLTIYDQATKIRYKFASANEGDK  234 (497)
Q Consensus       190 ~~~~~~l--~~~~~~---~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~~  234 (497)
                      .+.+..|  .|+...   ..|++|.||||+|+..++..+++++..++.+.
T Consensus       354 ~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I  403 (929)
T KOG0510|consen  354 DRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADI  403 (929)
T ss_pred             HHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCce
Confidence            6655544  444444   34778888888888888887777777665543

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.93  E-value=3.8e-26  Score=218.74  Aligned_cols=175  Identities=22%  Similarity=0.212  Sum_probs=148.0

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHH-cCCCcc--------ccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc--
Q 010920           14 RQSKDELLYQWVIAGDVDAIRALRS-QGASLE--------WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP--   82 (497)
Q Consensus        14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~-~ga~~n--------~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~--   82 (497)
                      ..+|.|||..||++||.++|++|++ .++++.        -....|-+||-.|+.. +|+++|++|+++|+++|....  
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaA-GHl~vVk~L~~~ga~VN~tT~TN  117 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAA-GHLEVVKLLLRRGASVNDTTRTN  117 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhcc-CcHHHHHHHHHhcCccccccccC
Confidence            5689999999999999999999999 455553        3345677888777765 789999999999999998655  


Q ss_pred             -------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcC
Q 010920           83 -------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM  155 (497)
Q Consensus        83 -------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~  155 (497)
                             +.-|+.++|++|+++|+|++..|..|.|.||+|+.+||.+++++|++.|+|++  .++..|+|+|| .|+..|
T Consensus       118 StPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn--~ks~kGNTALH-~caEsG  194 (615)
T KOG0508|consen  118 STPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVN--AKSYKGNTALH-DCAESG  194 (615)
T ss_pred             CccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcc--hhcccCchHHH-hhhhcc
Confidence                   77899999999999999999999999999999999999999999999999999  89999999999 999999


Q ss_pred             CHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHH
Q 010920          156 SRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAV  193 (497)
Q Consensus       156 ~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~  193 (497)
                      +.+++++|+.+|+.+..-. ++.+++..+...++...+
T Consensus       195 ~vdivq~Ll~~ga~i~~d~-~GmtPL~~Aa~tG~~~iV  231 (615)
T KOG0508|consen  195 SVDIVQLLLKHGAKIDVDG-HGMTPLLLAAVTGHTDIV  231 (615)
T ss_pred             cHHHHHHHHhCCceeeecC-CCCchHHHHhhhcchHHH
Confidence            9999999999998764333 244444444444443333

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.93  E-value=5.3e-25  Score=203.25  Aligned_cols=155  Identities=17%  Similarity=0.193  Sum_probs=129.4

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhC-CcHHHHHHHHHcCCCCCCcCc----------c
Q 010920           15 QSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDS-GLINVAKTLIELGANINAYRP----------A   83 (497)
Q Consensus        15 ~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g-~~~~~v~~Ll~~ga~~~~~~~----------~   83 (497)
                      +.+.||||+|+..|+.++|+.|++.   ++..|..|.||||+|+.++ ++.+++++|+++|++++..+.          +
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~   95 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYL   95 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHH
Confidence            4789999999999999999999985   5668899999999999864 358999999999999987642          1


Q ss_pred             ---cCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHH--cCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHH
Q 010920           84 ---KRGLEPTVRLLLSCGANALVRNDDCHTALGVARI--KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRK  158 (497)
Q Consensus        84 ---~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~--~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~  158 (497)
                         ..++.+++++|+++|++++.+|..|.||||+|+.  .++.+++++|+++|++++  .+|.+|.||||.+++..++.+
T Consensus        96 ~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin--~~d~~g~t~Lh~~a~~~~~~~  173 (209)
T PHA02859         96 SFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFL--NKDFDNNNILYSYILFHSDKK  173 (209)
T ss_pred             HhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc--cccCCCCcHHHHHHHhcCCHH
Confidence               2357889999999999999999999999998875  467899999999999988  788899999984456678889


Q ss_pred             HHHHhhhCCCCCCCCC
Q 010920          159 IWVVVIPCGTANPSKP  174 (497)
Q Consensus       159 iv~~Ll~~ga~~~~~~  174 (497)
                      ++++|+++|++.+.++
T Consensus       174 iv~~Ll~~Gadi~~~d  189 (209)
T PHA02859        174 IFDFLTSLGIDINETN  189 (209)
T ss_pred             HHHHHHHcCCCCCCCC
Confidence            9999998887665444

>PHA02798 ankyrin-like protein; Provisional

Probab=99.93  E-value=1.4e-24  Score=226.89  Aligned_cols=228  Identities=14%  Similarity=0.141  Sum_probs=169.2

Q ss_pred             CCCchHHHHHHH--cCCHHHHHHHHHcCCCccccCCCCChHHHHHHHh----CCcHHHHHHHHHcCCCCCCcCc------
Q 010920           15 QSKDELLYQWVI--AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD----SGLINVAKTLIELGANINAYRP------   82 (497)
Q Consensus        15 ~~G~T~Lh~Aa~--~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~----g~~~~~v~~Ll~~ga~~~~~~~------   82 (497)
                      ..|.|+++.+..  .++.++|++|+++|+++|.+|..|.||||+|+.+    .++.+++++|+++|+++|.++.      
T Consensus        34 ~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpL  113 (489)
T PHA02798         34 VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPL  113 (489)
T ss_pred             cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHH
Confidence            457787774444  4589999999999999999999999999998753    1348999999999999998775      


Q ss_pred             ---ccC---CCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCC---HHHHHHHHHCCCccccccc-ccCCCCHHHHHhh
Q 010920           83 ---AKR---GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH---INVVRAIESHICYFCGWLR-EFYGPSFLEALAP  152 (497)
Q Consensus        83 ---~~~---g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~---~~~v~~Ll~~g~~i~~~~~-~~~G~T~Lh~~A~  152 (497)
                         +..   ++.+++++|+++|++++.+|..|.||||+|+..++   .+++++|+++|++++  .. +..|.|||| .++
T Consensus       114 h~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin--~~~~~~~~t~Lh-~~~  190 (489)
T PHA02798        114 YCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDIN--THNNKEKYDTLH-CYF  190 (489)
T ss_pred             HHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcc--cccCcCCCcHHH-HHH
Confidence               332   47899999999999999999999999999999988   899999999999998  55 457899999 665


Q ss_pred             h----cCCHHHHHHhhhCCCCCCCCCcccccccc-------cCCcCcCHHH-HHHHhhcCCCCCCCCCCChHHHHHHhCC
Q 010920          153 Q----LMSRKIWVVVIPCGTANPSKPLRFELVIY-------PSLQDVQPRA-VIALWKAKIDEPKFHQPDPSLTIYDQAT  220 (497)
Q Consensus       153 ~----~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~-------~~~~~~~~~~-~~~l~~~~~~~~~~~g~~pl~~a~~~~~  220 (497)
                      .    .++.+++++|+++|++....+..+.++++       .......... .+.+.+++++..+..|.||||+|+..++
T Consensus       191 ~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~  270 (489)
T PHA02798        191 KYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNN  270 (489)
T ss_pred             HhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCc
Confidence            4    34789999999999887655433333322       1111111111 1223457777788888888888888888


Q ss_pred             hhHHHHHHhCCCCHH-----HHHHHHHhhc
Q 010920          221 KIRYKFASANEGDKH-----QLQWLDNACR  245 (497)
Q Consensus       221 ~~~~~~l~~~~~~~~-----~~~~l~~ac~  245 (497)
                      ...+++|.+.+.+..     ..++|+.|+.
T Consensus       271 ~~~v~~LL~~GAdin~~d~~G~TpL~~A~~  300 (489)
T PHA02798        271 RKIFEYLLQLGGDINIITELGNTCLFTAFE  300 (489)
T ss_pred             HHHHHHHHHcCCcccccCCCCCcHHHHHHH
Confidence            888888876665432     3345555543

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.93  E-value=2.4e-24  Score=225.38  Aligned_cols=217  Identities=12%  Similarity=0.011  Sum_probs=184.5

Q ss_pred             CCchHHHHHHHcC------CHHHHHHHHHcCCCccccCCCCChHHHHHHHhC--CcHHHHHHHHHcCCCC-CCcCc----
Q 010920           16 SKDELLYQWVIAG------DVDAIRALRSQGASLEWMDKEGKTPLIVACMDS--GLINVAKTLIELGANI-NAYRP----   82 (497)
Q Consensus        16 ~G~T~Lh~Aa~~g------~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g--~~~~~v~~Ll~~ga~~-~~~~~----   82 (497)
                      .+.||||.|+..+      +.++|++|+++|+++|.+|..|.||||.|+..+  ++.+++++|+++|+++ +..+.    
T Consensus        68 ~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~t  147 (494)
T PHA02989         68 YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYN  147 (494)
T ss_pred             CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCC
Confidence            4789999998754      578999999999999999999999999988753  3589999999999999 56544    


Q ss_pred             -------ccCCCHHHHHHHHhCCCCCcc-cCCCCCCHHHHHHHcC----CHHHHHHHHHCCCcccccccccCCCCHHHHH
Q 010920           83 -------AKRGLEPTVRLLLSCGANALV-RNDDCHTALGVARIKG----HINVVRAIESHICYFCGWLREFYGPSFLEAL  150 (497)
Q Consensus        83 -------~~~g~~~~v~~Ll~~ga~~~~-~~~~g~T~Lh~A~~~g----~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~  150 (497)
                             ...++.+++++|+++|++++. .+..|.||||+|+..+    +.+++++|+++|++++  ..+..|.|+|| .
T Consensus       148 pLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn--~~~~~~~t~l~-~  224 (494)
T PHA02989        148 LLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIE--TNNNGSESVLE-S  224 (494)
T ss_pred             HHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCcc--ccCCccccHHH-H
Confidence                   234689999999999999998 6889999999998764    8999999999999999  78889999999 6


Q ss_pred             hhhc------CCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHH--HHHhhcCCCCCCCCCCChHHHHHHhCChh
Q 010920          151 APQL------MSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAV--IALWKAKIDEPKFHQPDPSLTIYDQATKI  222 (497)
Q Consensus       151 A~~~------~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~--~~l~~~~~~~~~~~g~~pl~~a~~~~~~~  222 (497)
                      ++..      +..+++++|+. |++.+..+..+.++++.+...++...+  +...|++++..+..|.|||++|+..++..
T Consensus       225 ~~~~~~~~~~~~~~il~~l~~-~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~  303 (494)
T PHA02989        225 FLDNNKILSKKEFKVLNFILK-YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNID  303 (494)
T ss_pred             HHHhchhhcccchHHHHHHHh-CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH
Confidence            5443      35678887665 699998888899999999977766554  44489999999999999999999999999


Q ss_pred             HHHHHHhCCCCHHH
Q 010920          223 RYKFASANEGDKHQ  236 (497)
Q Consensus       223 ~~~~l~~~~~~~~~  236 (497)
                      .++++.........
T Consensus       304 iv~~LL~~~p~~~~  317 (494)
T PHA02989        304 MLNRILQLKPGKYL  317 (494)
T ss_pred             HHHHHHhcCCChHH
Confidence            99998877655443

>PHA02917 ankyrin-like protein; Provisional

Probab=99.92  E-value=2.1e-24  Score=229.70  Aligned_cols=218  Identities=13%  Similarity=0.084  Sum_probs=173.8

Q ss_pred             hhcCCCchHHHHHHHc---CCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcH----HHHHHHHHcCCCCCCcCc--
Q 010920           12 QQRQSKDELLYQWVIA---GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLI----NVAKTLIELGANINAYRP--   82 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~---g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~----~~v~~Ll~~ga~~~~~~~--   82 (497)
                      ..|..|.||||+|+..   |+.++|++||+.|++++.++..|.||||+|+.. ++.    +++++|++++..++..+.  
T Consensus        27 ~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~-g~~~v~~~~~~~Ll~~~~~~n~~~~~~  105 (661)
T PHA02917         27 TRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNS-RHVKVNKDIAMALLEATGYSNINDFNI  105 (661)
T ss_pred             ccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHc-CChhHHHHHHHHHHhccCCCCCCCcch
Confidence            3477999999998665   889999999999999999999999999999998 444    466889887543444332  


Q ss_pred             -----ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHH--HcCCHHHHHHHHHCCCcccccccc---cCC---------
Q 010920           83 -----AKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR--IKGHINVVRAIESHICYFCGWLRE---FYG---------  143 (497)
Q Consensus        83 -----~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~--~~g~~~~v~~Ll~~g~~i~~~~~~---~~G---------  143 (497)
                           +..++.++|++|+++|++++.+|..|+||||.|+  ..|+.+++++|+++|++++  ..|   ..|         
T Consensus       106 ~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn--~~d~~~~~g~~~~~~~~~  183 (661)
T PHA02917        106 FSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVL--YEDEDDEYGYAYDDYQPR  183 (661)
T ss_pred             HHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcc--cccccccccccccccccc
Confidence                 6778999999999999999999999999999653  5789999999999999997  443   334         


Q ss_pred             --CCHHHHHhhh-----------cCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCH--HHHHHH-hhcCCC----C
Q 010920          144 --PSFLEALAPQ-----------LMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQP--RAVIAL-WKAKID----E  203 (497)
Q Consensus       144 --~T~Lh~~A~~-----------~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~--~~~~~l-~~~~~~----~  203 (497)
                        .|||| +|+.           .++.+++++|+++|++.+..+..+.++++.+...++.  ..+..| .+++..    .
T Consensus       184 ~~~t~L~-~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~g~d~~~~~~~  262 (661)
T PHA02917        184 NCGTVLH-LYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMKGIDNTAYSYI  262 (661)
T ss_pred             ccccHHH-HHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHhCCcccccccc
Confidence              59999 6764           4689999999999999999988899999999987764  222222 454443    3


Q ss_pred             CCCCCCChHHHHHHh---------CChhHHHHHHhCCCC
Q 010920          204 PKFHQPDPSLTIYDQ---------ATKIRYKFASANEGD  233 (497)
Q Consensus       204 ~~~~g~~pl~~a~~~---------~~~~~~~~l~~~~~~  233 (497)
                      .+..+.+|++++.-.         ...+.+++|.+.+.+
T Consensus       263 ~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~  301 (661)
T PHA02917        263 DDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKP  301 (661)
T ss_pred             cCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCC
Confidence            556778888888731         156778888877754

>PHA02795 ankyrin-like protein; Provisional

Probab=99.92  E-value=1.8e-24  Score=214.93  Aligned_cols=156  Identities=13%  Similarity=0.047  Sum_probs=138.5

Q ss_pred             hcCCCchHHHHHHH--cCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcC--------c
Q 010920           13 QRQSKDELLYQWVI--AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYR--------P   82 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~--~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~--------~   82 (497)
                      .+.+++|+||+|+.  .|+.++|++|+++||+++.++  +.||||+|+.. ++.+++++|+++|++.+...        .
T Consensus       112 ~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~~--~~t~lh~A~~~-~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~  188 (437)
T PHA02795        112 NCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKIE--CLNAYFRGICK-KESSVVEFILNCGIPDENDVKLDLYKIIQ  188 (437)
T ss_pred             ccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCCC--CCCHHHHHHHc-CcHHHHHHHHhcCCcccccccchhhhhhc
Confidence            46789999999999  999999999999999998854  58999999998 45999999999998533222        0


Q ss_pred             -------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcC
Q 010920           83 -------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM  155 (497)
Q Consensus        83 -------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~  155 (497)
                             ...++.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| .|+..|
T Consensus       189 ~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN--~~d~~G~TpLh-~Aa~~g  265 (437)
T PHA02795        189 YTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVN--AVMSNGYTCLD-VAVDRG  265 (437)
T ss_pred             cchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHcC
Confidence                   45567899999999999999999999999999999999999999999999999  89999999999 888877


Q ss_pred             --------CHHHHHHhhhCCCCCCCCC
Q 010920          156 --------SRKIWVVVIPCGTANPSKP  174 (497)
Q Consensus       156 --------~~~iv~~Ll~~ga~~~~~~  174 (497)
                              +.+++++|+++|++.+...
T Consensus       266 ~~~~~~~~~~eIvelLL~~gadI~~~~  292 (437)
T PHA02795        266 SVIARRETHLKILEILLREPLSIDCIK  292 (437)
T ss_pred             CcccccccHHHHHHHHHhCCCCCCchh
Confidence                    4699999999999876544

>PHA02798 ankyrin-like protein; Provisional

Probab=99.92  E-value=1.2e-23  Score=219.75  Aligned_cols=224  Identities=12%  Similarity=0.081  Sum_probs=192.4

Q ss_pred             hcCCCchHHHHHHHc-----CCHHHHHHHHHcCCCccccCCCCChHHHHHHHhC--CcHHHHHHHHHcCCCCCCcCc---
Q 010920           13 QRQSKDELLYQWVIA-----GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDS--GLINVAKTLIELGANINAYRP---   82 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~-----g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g--~~~~~v~~Ll~~ga~~~~~~~---   82 (497)
                      ++..|.||||.|+..     ++.+++++|+++|+++|.+|..|.||||+|+..+  ++.+++++|+++|++++..+.   
T Consensus        67 ~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~  146 (489)
T PHA02798         67 LDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGF  146 (489)
T ss_pred             CCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCC
Confidence            456999999999864     7799999999999999999999999999999975  368999999999999998876   


Q ss_pred             ------ccCCC---HHHHHHHHhCCCCCcccC-CCCCCHHHHHHHc----CCHHHHHHHHHCCCcccccccccCCCCHHH
Q 010920           83 ------AKRGL---EPTVRLLLSCGANALVRN-DDCHTALGVARIK----GHINVVRAIESHICYFCGWLREFYGPSFLE  148 (497)
Q Consensus        83 ------~~~g~---~~~v~~Ll~~ga~~~~~~-~~g~T~Lh~A~~~----g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh  148 (497)
                            +..++   .+++++|+++|++++.++ ..|.||||.++..    ++.+++++|+++|++++  ..+..|.|+++
T Consensus       147 tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~--~~~~~~~~~~~  224 (489)
T PHA02798        147 TMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIIN--KENKSHKKKFM  224 (489)
T ss_pred             cHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcc--cCCccccchHH
Confidence                  55666   999999999999999885 5799999998764    47999999999999998  78888999876


Q ss_pred             H------HhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHH--HHhhcCCCCCCCCCCChHHHHHHhCC
Q 010920          149 A------LAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVI--ALWKAKIDEPKFHQPDPSLTIYDQAT  220 (497)
Q Consensus       149 ~------~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~g~~pl~~a~~~~~  220 (497)
                      .      ++...++.+++.+|+. +++.+.++..+.+++|.+...+....+.  ...|++++..+..|.|||+.|+.++.
T Consensus       225 ~~l~~l~~~~~~~~~~i~~~l~~-~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~  303 (489)
T PHA02798        225 EYLNSLLYDNKRFKKNILDFIFS-YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENES  303 (489)
T ss_pred             HHHHHHHhhcccchHHHHHHHHh-cCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCc
Confidence            1      1345567888888776 6899988888999999998777665544  44899999999999999999999999


Q ss_pred             hhHHHHHHhCCCCHHHHHH
Q 010920          221 KIRYKFASANEGDKHQLQW  239 (497)
Q Consensus       221 ~~~~~~l~~~~~~~~~~~~  239 (497)
                      ...++.+.....+...+..
T Consensus       304 ~~iv~~lL~~~~~~~~i~~  322 (489)
T PHA02798        304 KFIFNSILNKKPNKNTISY  322 (489)
T ss_pred             HHHHHHHHccCCCHHHHHH
Confidence            9999999988887765543

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.91  E-value=5.2e-24  Score=222.10  Aligned_cols=211  Identities=14%  Similarity=0.054  Sum_probs=181.4

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCC-----------------------------
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSG-----------------------------   62 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~-----------------------------   62 (497)
                      .++..|.||||+||..|+.+++++|++.+...+.  ..+.+|||.|+..|+                             
T Consensus        65 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~  142 (477)
T PHA02878         65 QPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV--FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKD  142 (477)
T ss_pred             CCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc--ccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccch
Confidence            4567999999999999999999999998766544  467899999988643                             


Q ss_pred             ---cHHHHHHHHHcCCCCCCcCc----------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH
Q 010920           63 ---LINVAKTLIELGANINAYRP----------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES  129 (497)
Q Consensus        63 ---~~~~v~~Ll~~ga~~~~~~~----------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~  129 (497)
                         ..+++++|+++|++++..+.          +..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++
T Consensus       143 ~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~  222 (477)
T PHA02878        143 DIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLE  222 (477)
T ss_pred             hhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence               12388999999999988653          78899999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccccCCCCHHHHHhhh-cCCHHHHHHhhhCCCCCCCCCc-ccccccccCCcCcCHHHHHHHhhcCCCCCCCC
Q 010920          130 HICYFCGWLREFYGPSFLEALAPQ-LMSRKIWVVVIPCGTANPSKPL-RFELVIYPSLQDVQPRAVIALWKAKIDEPKFH  207 (497)
Q Consensus       130 ~g~~i~~~~~~~~G~T~Lh~~A~~-~~~~~iv~~Ll~~ga~~~~~~~-~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~  207 (497)
                      .|++++  .+|..|.|||| +|+. .++.+++++|+++|++.+.... .+.+++|.+........++...+++++..+..
T Consensus       223 ~ga~in--~~d~~g~TpLh-~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A~~~~~~v~~Ll~~gadin~~d~~  299 (477)
T PHA02878        223 NGASTD--ARDKCGNTPLH-ISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKSERKLKLLLEYGADINSLNSY  299 (477)
T ss_pred             cCCCCC--CCCCCCCCHHH-HHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHHccCHHHHHHHHHCCCCCCCcCCC
Confidence            999999  89999999999 7775 4789999999999999887663 58899999976666666677799999999999


Q ss_pred             CCChHHHHHHhC-ChhHHHHH
Q 010920          208 QPDPSLTIYDQA-TKIRYKFA  227 (497)
Q Consensus       208 g~~pl~~a~~~~-~~~~~~~l  227 (497)
                      |.|||+.|+... .....+++
T Consensus       300 g~TpL~~A~~~~~~~~~~~~l  320 (477)
T PHA02878        300 KLTPLSSAVKQYLCINIGRIL  320 (477)
T ss_pred             CCCHHHHHHHHcCccchHHHH
Confidence            999999998753 33344433

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=9.6e-24  Score=202.37  Aligned_cols=149  Identities=24%  Similarity=0.305  Sum_probs=141.7

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------cc
Q 010920           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AK   84 (497)
Q Consensus        14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~   84 (497)
                      +..|.+||-.|+..||+++|++|+++|+++|.......|||--||.. +|+++|++|+++|+|+++.+.         +.
T Consensus        81 ~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfD-G~leivKyLvE~gad~~IanrhGhTcLmIa~y  159 (615)
T KOG0508|consen   81 TIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFD-GHLEIVKYLVEHGADPEIANRHGHTCLMIACY  159 (615)
T ss_pred             ccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhc-chhHHHHHHHHcCCCCcccccCCCeeEEeeec
Confidence            56799999999999999999999999999999998888999999998 569999999999999999887         88


Q ss_pred             CCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 010920           85 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI  164 (497)
Q Consensus        85 ~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll  164 (497)
                      .||.+++++|++.|+|+|.++..|+|+||.++..|+.+++++|+++|+.++   .|.+|.|||. .|+..|+.++|++|+
T Consensus       160 kGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~---~d~~GmtPL~-~Aa~tG~~~iVe~L~  235 (615)
T KOG0508|consen  160 KGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID---VDGHGMTPLL-LAAVTGHTDIVERLL  235 (615)
T ss_pred             cCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceee---ecCCCCchHH-HHhhhcchHHHHHHh
Confidence            899999999999999999999999999999999999999999999999997   8889999999 999999999999999


Q ss_pred             hCC
Q 010920          165 PCG  167 (497)
Q Consensus       165 ~~g  167 (497)
                      ...
T Consensus       236 ~~~  238 (615)
T KOG0508|consen  236 QCE  238 (615)
T ss_pred             cCC
Confidence            733

>PHA02795 ankyrin-like protein; Provisional

Probab=99.90  E-value=1.4e-22  Score=201.47  Aligned_cols=157  Identities=13%  Similarity=-0.047  Sum_probs=136.2

Q ss_pred             HHHHcCCHHHHHHHHHcCCCcc------ccCCCCChHHHHHHH--hCCcHHHHHHHHHcCCCCCCcCc-------ccCCC
Q 010920           23 QWVIAGDVDAIRALRSQGASLE------WMDKEGKTPLIVACM--DSGLINVAKTLIELGANINAYRP-------AKRGL   87 (497)
Q Consensus        23 ~Aa~~g~~~~v~~Ll~~ga~~n------~~d~~G~TpLh~Aa~--~g~~~~~v~~Ll~~ga~~~~~~~-------~~~g~   87 (497)
                      +|+..+..+++++|+++|+++|      .++..++|+||+|+.  . ++.++|++|+++||+++..+.       +..++
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~-n~~eiV~~LI~~GADIn~~~~~t~lh~A~~~~~  161 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAY-VEIDIVDFMVDHGAVIYKIECLNAYFRGICKKE  161 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcC-CCHHHHHHHHHCCCCCCCCCCCCHHHHHHHcCc
Confidence            9999999999999999999998      888899999999999  6 569999999999999988654       66799


Q ss_pred             HHHHHHHHhCCCCCcccC------CCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 010920           88 EPTVRLLLSCGANALVRN------DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV  161 (497)
Q Consensus        88 ~~~v~~Ll~~ga~~~~~~------~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~  161 (497)
                      .+++++|+++|++.....      ..+.|++|.|+..++.+++++|+++|++++  .+|..|.|||| +|+..|+.++++
T Consensus       162 ~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN--~kD~~G~TpLh-~Aa~~g~~eiVe  238 (437)
T PHA02795        162 SSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDIN--QLDAGGRTLLY-RAIYAGYIDLVS  238 (437)
T ss_pred             HHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcC--cCCCCCCCHHH-HHHHcCCHHHHH
Confidence            999999999998543222      347899999999999999999999999999  89999999999 999999999999


Q ss_pred             HhhhCCCCCCCCCccccccccc
Q 010920          162 VVIPCGTANPSKPLRFELVIYP  183 (497)
Q Consensus       162 ~Ll~~ga~~~~~~~~~~~~l~~  183 (497)
                      +|+++|++.+..+..+.++++.
T Consensus       239 lLL~~GAdIN~~d~~G~TpLh~  260 (437)
T PHA02795        239 WLLENGANVNAVMSNGYTCLDV  260 (437)
T ss_pred             HHHHCCCCCCCcCCCCCCHHHH
Confidence            9999998775555433333333

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.89  E-value=1.9e-22  Score=186.20  Aligned_cols=142  Identities=13%  Similarity=0.096  Sum_probs=125.6

Q ss_pred             hhhcCCCchHHHHHHHcC--CHHHHHHHHHcCCCccccC-CCCChHHHHHHHhC--CcHHHHHHHHHcCCCCCCcCc---
Q 010920           11 HQQRQSKDELLYQWVIAG--DVDAIRALRSQGASLEWMD-KEGKTPLIVACMDS--GLINVAKTLIELGANINAYRP---   82 (497)
Q Consensus        11 ~~~~~~G~T~Lh~Aa~~g--~~~~v~~Ll~~ga~~n~~d-~~G~TpLh~Aa~~g--~~~~~v~~Ll~~ga~~~~~~~---   82 (497)
                      ...+..|.||||+|+..+  +.+++++|+++|+++|.++ ..|.||||+|+..+  ++.+++++|+++|++++..+.   
T Consensus        45 n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~  124 (209)
T PHA02859         45 NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGK  124 (209)
T ss_pred             hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCC
Confidence            346789999999999854  8999999999999999997 48999999998742  358999999999999999876   


Q ss_pred             ------c--cCCCHHHHHHHHhCCCCCcccCCCCCCHHHH-HHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhh
Q 010920           83 ------A--KRGLEPTVRLLLSCGANALVRNDDCHTALGV-ARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQ  153 (497)
Q Consensus        83 ------~--~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~-A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~  153 (497)
                            +  ..++.+++++|+++|++++.+|..|.||||. |+..++.+++++|+++|++++  .+|..|.|||| +|+.
T Consensus       125 TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~--~~d~~g~tpl~-la~~  201 (209)
T PHA02859        125 NLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDIN--ETNKSGYNCYD-LIKF  201 (209)
T ss_pred             CHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCC--CCCCCCCCHHH-HHhh
Confidence                  2  2468999999999999999999999999995 567889999999999999999  89999999999 7765


Q ss_pred             cC
Q 010920          154 LM  155 (497)
Q Consensus       154 ~~  155 (497)
                      ++
T Consensus       202 ~~  203 (209)
T PHA02859        202 RN  203 (209)
T ss_pred             hh
Confidence            43

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.89  E-value=8.3e-23  Score=207.86  Aligned_cols=212  Identities=15%  Similarity=0.074  Sum_probs=180.7

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------cc
Q 010920           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AK   84 (497)
Q Consensus        14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~   84 (497)
                      |..|.||||+|++....+.|+.|++.|++++..+.++.+|||+|+..|+ .++.++|+++|+|+|..+.         +.
T Consensus        85 D~~~n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh~A~~~~~-~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~  163 (929)
T KOG0510|consen   85 DSADNTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPLHLAADSGN-YSCLKLLLDYGADVNLEDENGFTPLHLAAR  163 (929)
T ss_pred             hcccCchhHHHhhcchHHHHHHHHhcCCCCChhhhhccCchhhccccch-HHHHHHHHHhcCCccccccCCCchhhHHHh
Confidence            6789999999999999999999999999999999999999999999866 9999999999999999887         77


Q ss_pred             CCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-----CCCcccccccccCCCCHHHHHhhhcCCHHH
Q 010920           85 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES-----HICYFCGWLREFYGPSFLEALAPQLMSRKI  159 (497)
Q Consensus        85 ~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~-----~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~i  159 (497)
                      .++.+..+.|++.|+++-..|.+|++|+|.|++.|..++.++.+.     ++..++  ..+..|.|||| .|+..|+.++
T Consensus       164 ~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in--~~~n~~~~pLh-lAve~g~~e~  240 (929)
T KOG0510|consen  164 KNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHIN--FDNNEKATPLH-LAVEGGDIEM  240 (929)
T ss_pred             cChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccc--cccCCCCcchh-hhhhcCCHHH
Confidence            889998899999999998888899999999999999999888887     667777  67888888888 8888888888


Q ss_pred             HHHhhhCCCCCC---------------CCCcccccccccCCcCcCHHHHHH--HhhcCCCCCCCCCCChHHHHHHhCChh
Q 010920          160 WVVVIPCGTANP---------------SKPLRFELVIYPSLQDVQPRAVIA--LWKAKIDEPKFHQPDPSLTIYDQATKI  222 (497)
Q Consensus       160 v~~Ll~~ga~~~---------------~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~~~~g~~pl~~a~~~~~~~  222 (497)
                      ++.+++.|..+.               ..+..+.+++|.+.+++.+..+-.  ..|++++.++.++.+|||.|+..++..
T Consensus       241 lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~n  320 (929)
T KOG0510|consen  241 LKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRIN  320 (929)
T ss_pred             HHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHH
Confidence            888888776532               122346788888888887766543  378888888888888888888888888


Q ss_pred             HHHHHHh
Q 010920          223 RYKFASA  229 (497)
Q Consensus       223 ~~~~l~~  229 (497)
                      .++-|..
T Consensus       321 tv~rLL~  327 (929)
T KOG0510|consen  321 TVERLLQ  327 (929)
T ss_pred             HHHHHHh
Confidence            7777665

>PHA02730 ankyrin-like protein; Provisional

Probab=99.89  E-value=7.9e-22  Score=205.14  Aligned_cols=210  Identities=14%  Similarity=0.078  Sum_probs=171.6

Q ss_pred             HHcCCHHHHHHHHHcCCCccccCCCCChHHHH--HHHhCCcHHHHHHHHH------------------------------
Q 010920           25 VIAGDVDAIRALRSQGASLEWMDKEGKTPLIV--ACMDSGLINVAKTLIE------------------------------   72 (497)
Q Consensus        25 a~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~--Aa~~g~~~~~v~~Ll~------------------------------   72 (497)
                      ..+++.+++++||++||++|.+|.+|.||||+  |... ++.|+|++|++                              
T Consensus       210 ~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~-~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (672)
T PHA02730        210 SESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCST-IDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRV  288 (672)
T ss_pred             hhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCc-ccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhc
Confidence            45689999999999999999999999999995  4444 34999999999                              


Q ss_pred             --cCCCCCC--------------------cCc------------------------------cc---CCCHHHHHHHHhC
Q 010920           73 --LGANINA--------------------YRP------------------------------AK---RGLEPTVRLLLSC   97 (497)
Q Consensus        73 --~ga~~~~--------------------~~~------------------------------~~---~g~~~~v~~Ll~~   97 (497)
                        +|+|+..                    .+.                              ..   ..+.+++++|+++
T Consensus       289 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~  368 (672)
T PHA02730        289 TPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDN  368 (672)
T ss_pred             ccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHC
Confidence              7888755                    110                              12   2579999999999


Q ss_pred             CCCCcccCCCCCCHHHHHHHcCC----HHHHHHHHHCCC--cccccccccCCCCHHHH--HhhhcC---------CHHHH
Q 010920           98 GANALVRNDDCHTALGVARIKGH----INVVRAIESHIC--YFCGWLREFYGPSFLEA--LAPQLM---------SRKIW  160 (497)
Q Consensus        98 ga~~~~~~~~g~T~Lh~A~~~g~----~~~v~~Ll~~g~--~i~~~~~~~~G~T~Lh~--~A~~~~---------~~~iv  160 (497)
                      ||++|.. ..|.||||+|+..++    .+++++|+++|+  +++  .+|.+|.||||.  ++...+         ..+++
T Consensus       369 GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN--~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~iv  445 (672)
T PHA02730        369 GATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAIN--HVSNNGRLCMYGLILSRFNNCGYHCYETILIDVF  445 (672)
T ss_pred             CCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCcccc--ccccCCCchHhHHHHHHhccccccccchhHHHHH
Confidence            9999985 799999999998875    899999999998  577  789999999992  232222         23579


Q ss_pred             HHhhhCCCCCCCCCcccccccccCCcCcCH--HHHHHHhhcCCCCCCC-CCCChHHHHHHh--CChhHHHHHHhCCCCHH
Q 010920          161 VVVIPCGTANPSKPLRFELVIYPSLQDVQP--RAVIALWKAKIDEPKF-HQPDPSLTIYDQ--ATKIRYKFASANEGDKH  235 (497)
Q Consensus       161 ~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~--~~~~~l~~~~~~~~~~-~g~~pl~~a~~~--~~~~~~~~l~~~~~~~~  235 (497)
                      ++|+++|++.+..+..+.++++.+...+..  ..++...|++++..+. .|.+|+++|...  +....++++...+.+..
T Consensus       446 k~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i~  525 (672)
T PHA02730        446 DILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTLE  525 (672)
T ss_pred             HHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCHH
Confidence            999999999999999999999999876655  4455568999999997 599999999874  67889999998887765


Q ss_pred             HHH
Q 010920          236 QLQ  238 (497)
Q Consensus       236 ~~~  238 (497)
                      .+.
T Consensus       526 ~I~  528 (672)
T PHA02730        526 TMI  528 (672)
T ss_pred             HHH
Confidence            544

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.87  E-value=1.8e-22  Score=187.99  Aligned_cols=159  Identities=25%  Similarity=0.373  Sum_probs=113.6

Q ss_pred             chhhhchhhhcCCCchHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCChHHHHHHHhC----CcHHHHHHHHHcCCCCC
Q 010920            4 SLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQG-ASLEWMDKEGKTPLIVACMDS----GLINVAKTLIELGANIN   78 (497)
Q Consensus         4 ~l~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~g-a~~n~~d~~G~TpLh~Aa~~g----~~~~~v~~Ll~~ga~~~   78 (497)
                      .|-.+=.+.-|.+|+|+||||+.++++++|+.||..| .+++.+|..|+||+|+|+...    .+.++|.-|+..| |||
T Consensus       255 ~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVN  333 (452)
T KOG0514|consen  255 PLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVN  333 (452)
T ss_pred             HHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccc
Confidence            3334444556779999999999999999999999999 699999999999999999852    2356677776654 455


Q ss_pred             CcCc----------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCcccccccccCCCCHH
Q 010920           79 AYRP----------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH-ICYFCGWLREFYGPSFL  147 (497)
Q Consensus        79 ~~~~----------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~-g~~i~~~~~~~~G~T~L  147 (497)
                      ++-.          +..|+.++|+.||.+|||+|.+|.+|.|+||.|+.+||.++|++||.. ++|+.  ..|.+|.|+|
T Consensus       334 aKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~s--LtD~DgSTAl  411 (452)
T KOG0514|consen  334 AKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDIS--LTDVDGSTAL  411 (452)
T ss_pred             hhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccce--eecCCCchhh
Confidence            4432          556666666666666666666666666666666666666666666654 45665  6666666666


Q ss_pred             HHHhhhcCCHHHHHHhhhC
Q 010920          148 EALAPQLMSRKIWVVVIPC  166 (497)
Q Consensus       148 h~~A~~~~~~~iv~~Ll~~  166 (497)
                      . +|...|+.+|.-+|..+
T Consensus       412 ~-IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  412 S-IALEAGHREIAVMLYAH  429 (452)
T ss_pred             h-hHHhcCchHHHHHHHHH
Confidence            6 66666666666655543

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.87  E-value=3.4e-22  Score=215.48  Aligned_cols=171  Identities=24%  Similarity=0.180  Sum_probs=106.7

Q ss_pred             CCchHHHHHHHcC-CHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccC
Q 010920           16 SKDELLYQWVIAG-DVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKR   85 (497)
Q Consensus        16 ~G~T~Lh~Aa~~g-~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~   85 (497)
                      .|.||+|+|+..| +.++...++..|+++|....+|.||||.|+.. +|.+++++|++.++..+....         ...
T Consensus       439 lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~-Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~  517 (1143)
T KOG4177|consen  439 LGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQE-GHTEVVQLLLEGGANDNLDAKKGLTPLHLAADE  517 (1143)
T ss_pred             cCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhcc-CCchHHHHhhhcCCccCccchhccchhhhhhhh
Confidence            5666666666666 56666666666666666666666666666665 346666666665544433322         445


Q ss_pred             CCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhh
Q 010920           86 GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIP  165 (497)
Q Consensus        86 g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~  165 (497)
                      ++..+++.++++|++++.++.+|+||||.|+.+|+.++|++|+++|++++  .+++.|+|||| .|+..|+.+|+++|++
T Consensus       518 ~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~--ak~~~G~TPLH-~Aa~~G~~~i~~LLlk  594 (1143)
T KOG4177|consen  518 DTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVN--AKDKLGYTPLH-QAAQQGHNDIAELLLK  594 (1143)
T ss_pred             hhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCcccc--ccCCCCCChhh-HHHHcChHHHHHHHHH
Confidence            56666666666666666666666666666666666666666666666666  56666666666 6666666666666666


Q ss_pred             CCCCCCCCCcccccccccCCcCcCH
Q 010920          166 CGTANPSKPLRFELVIYPSLQDVQP  190 (497)
Q Consensus       166 ~ga~~~~~~~~~~~~l~~~~~~~~~  190 (497)
                      +|++.+..+..+.++++.+...+.+
T Consensus       595 ~GA~vna~d~~g~TpL~iA~~lg~~  619 (1143)
T KOG4177|consen  595 HGASVNAADLDGFTPLHIAVRLGYL  619 (1143)
T ss_pred             cCCCCCcccccCcchhHHHHHhccc
Confidence            6666666666566666665554443

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.87  E-value=1.3e-22  Score=218.69  Aligned_cols=218  Identities=21%  Similarity=0.158  Sum_probs=190.4

Q ss_pred             hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------c
Q 010920           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------A   83 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~   83 (497)
                      +...|.||||.|+..++.++|+.++++|++++.++..|+||+|+|+..|.+.+++..+++.|+++|....         +
T Consensus       403 ~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaa  482 (1143)
T KOG4177|consen  403 AGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAA  482 (1143)
T ss_pred             CCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhh
Confidence            4557888888888888888888888888888888888888888888885478888888888888888665         7


Q ss_pred             cCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHh
Q 010920           84 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV  163 (497)
Q Consensus        84 ~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~L  163 (497)
                      ..||.++++.|++.++..+.....|.|+||+|...++..+++.++.+|++++  .++.+|.|||| .|+..|+..+|++|
T Consensus       483 q~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~--~~~~r~~TpLh-~A~~~g~v~~VkfL  559 (1143)
T KOG4177|consen  483 QEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVD--LRTGRGYTPLH-VAVHYGNVDLVKFL  559 (1143)
T ss_pred             ccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCcee--hhcccccchHH-HHHhcCCchHHHHh
Confidence            7889999999998888888888889999999999999999999999999998  89999999999 99999999999999


Q ss_pred             hhCCCCCCCCCcccccccccCCcCcCHHHHHHH--hhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCCC
Q 010920          164 IPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL--WKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGD  233 (497)
Q Consensus       164 l~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~  233 (497)
                      +++|++...+...+.+++|.+...++...+..|  +|+.++..+.+|.|||+.|+..+.....+++.....+
T Consensus       560 Le~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  560 LEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             hhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence            999999998888899999999988876555444  9999999999999999999999999999988855444

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.87  E-value=3.8e-21  Score=170.95  Aligned_cols=142  Identities=12%  Similarity=0.150  Sum_probs=121.1

Q ss_pred             chhhhcCCCchHHHHHHHcCCH----HHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCccc
Q 010920            9 NQHQQRQSKDELLYQWVIAGDV----DAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAK   84 (497)
Q Consensus         9 ~~~~~~~~G~T~Lh~Aa~~g~~----~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~   84 (497)
                      |..+.+..+.++||+||+.|+.    +++++|++.|++++.+|..|+||||+|+..|. .+.                  
T Consensus        12 ~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~-~~~------------------   72 (166)
T PHA02743         12 GAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDR-ANA------------------   72 (166)
T ss_pred             HHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCc-cCH------------------
Confidence            3445567899999999999998    66778889999999999999999999999744 222                  


Q ss_pred             CCCHHHHHHHHhCCCCCcccC-CCCCCHHHHHHHcCCHHHHHHHHH-CCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010920           85 RGLEPTVRLLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIES-HICYFCGWLREFYGPSFLEALAPQLMSRKIWVV  162 (497)
Q Consensus        85 ~g~~~~v~~Ll~~ga~~~~~~-~~g~T~Lh~A~~~g~~~~v~~Ll~-~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~  162 (497)
                         .+++++|+++|++++.++ ..|.||||+|+..|+.+++++|+. .|++++  .++..|.|||| +|+..++.+++++
T Consensus        73 ---~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~--~~d~~g~tpL~-~A~~~~~~~iv~~  146 (166)
T PHA02743         73 ---VMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLG--AINYQHETAYH-IAYKMRDRRMMEI  146 (166)
T ss_pred             ---HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCcc--CcCCCCCCHHH-HHHHcCCHHHHHH
Confidence               234566667777777787 589999999999999999999995 899999  89999999999 9999999999999


Q ss_pred             hhhCCCCCCCCCc
Q 010920          163 VIPCGTANPSKPL  175 (497)
Q Consensus       163 Ll~~ga~~~~~~~  175 (497)
                      |+.+|++.+....
T Consensus       147 Ll~~ga~~~~~~~  159 (166)
T PHA02743        147 LRANGAVCDDPLS  159 (166)
T ss_pred             HHHcCCCCCCccc
Confidence            9999998866553

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.86  E-value=4.1e-21  Score=211.96  Aligned_cols=156  Identities=13%  Similarity=0.137  Sum_probs=139.9

Q ss_pred             hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------c
Q 010920           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------A   83 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~   83 (497)
                      .+..+.++||.||..|+.++++.|++.|+++|..|..|.||||+|+.. ++.+++++|+++|+++|.++.         +
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~-g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~  599 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASK-GYEDCVLVLLKHACNVHIRDANGNTALWNAI  599 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-ChHHHHHHHHhcCCCCCCcCCCCCCHHHHHH
Confidence            345678999999999999999999999999999999999999999998 559999999999999998765         7


Q ss_pred             cCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHh
Q 010920           84 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV  163 (497)
Q Consensus        84 ~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~L  163 (497)
                      ..|+.+++++|++.++..+  ...|.++||.|+..|+.+++++|+++|++++  .+|.+|.|||| +|+..|+.+++++|
T Consensus       600 ~~g~~~iv~~L~~~~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin--~~d~~G~TpLh-~A~~~g~~~iv~~L  674 (823)
T PLN03192        600 SAKHHKIFRILYHFASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVD--SEDHQGATALQ-VAMAEDHVDMVRLL  674 (823)
T ss_pred             HhCCHHHHHHHHhcCcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHCCcHHHHHHH
Confidence            7899999999998877653  3457789999999999999999999999999  89999999999 89999999999999


Q ss_pred             hhCCCCCCCCC
Q 010920          164 IPCGTANPSKP  174 (497)
Q Consensus       164 l~~ga~~~~~~  174 (497)
                      +++|++.+..+
T Consensus       675 l~~GAdv~~~~  685 (823)
T PLN03192        675 IMNGADVDKAN  685 (823)
T ss_pred             HHcCCCCCCCC
Confidence            99998876554

>PHA02741 hypothetical protein; Provisional

Probab=99.86  E-value=4.3e-21  Score=171.35  Aligned_cols=133  Identities=15%  Similarity=0.125  Sum_probs=114.5

Q ss_pred             hcCCCchHHHHHHHcCCHHHHHHHHH------cCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCC
Q 010920           13 QRQSKDELLYQWVIAGDVDAIRALRS------QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRG   86 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~------~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g   86 (497)
                      ++..|.||||+|++.|+.+++++|+.      .|++++.+|..|.||||+|+..|. .+++                   
T Consensus        17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~-~~~~-------------------   76 (169)
T PHA02741         17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHE-AQLA-------------------   76 (169)
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCC-hHHH-------------------
Confidence            46799999999999999999999864      368899999999999999999743 3222                   


Q ss_pred             CHHHHHHHHhCCCCCcccCC-CCCCHHHHHHHcCCHHHHHHHHH-CCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 010920           87 LEPTVRLLLSCGANALVRND-DCHTALGVARIKGHINVVRAIES-HICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI  164 (497)
Q Consensus        87 ~~~~v~~Ll~~ga~~~~~~~-~g~T~Lh~A~~~g~~~~v~~Ll~-~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll  164 (497)
                       .+++++|+++|++++.++. .|.||||+|+..++.+++++|+. .|++++  ..|.+|.|||| +|+..++.+++++|+
T Consensus        77 -~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~--~~n~~g~tpL~-~A~~~~~~~iv~~L~  152 (169)
T PHA02741         77 -AEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLH--FCNADNKSPFE-LAIDNEDVAMMQILR  152 (169)
T ss_pred             -HHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC--cCCCCCCCHHH-HHHHCCCHHHHHHHH
Confidence             2455666677777777875 89999999999999999999997 599998  89999999999 999999999999999


Q ss_pred             hCCCC
Q 010920          165 PCGTA  169 (497)
Q Consensus       165 ~~ga~  169 (497)
                      +.++.
T Consensus       153 ~~~~~  157 (169)
T PHA02741        153 EIVAT  157 (169)
T ss_pred             HHHHH
Confidence            87654

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.85  E-value=1.3e-21  Score=170.44  Aligned_cols=149  Identities=25%  Similarity=0.183  Sum_probs=122.7

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------   82 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------   82 (497)
                      +.+..+.+|+.+++...+.+.+.+|.+.  -+|..|..|.|||+||+.. +|+.+|++||+.|||++....         
T Consensus       124 evs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~-G~i~vV~fLL~~GAdp~~lgk~resALsLA  200 (296)
T KOG0502|consen  124 EVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAK-GHIPVVQFLLNSGADPDALGKYRESALSLA  200 (296)
T ss_pred             ccccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHhc-CchHHHHHHHHcCCChhhhhhhhhhhHhHH
Confidence            3455788899999988888888777665  6788899999999999998 568999999999988888655         


Q ss_pred             ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010920           83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV  162 (497)
Q Consensus        83 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~  162 (497)
                      ...|..++|++||.++.|+|..|.+|.|||-||++.+|.+|++.|+..|++++  ..+..|.+++. .|+..|+. +|+.
T Consensus       201 t~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t--~e~dsGy~~md-lAValGyr-~Vqq  276 (296)
T KOG0502|consen  201 TRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVT--QEDDSGYWIMD-LAVALGYR-IVQQ  276 (296)
T ss_pred             hcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcc--cccccCCcHHH-HHHHhhhH-HHHH
Confidence            66778888888888888888888888888888888888888888888888888  78888888888 78888877 6666


Q ss_pred             hhhCC
Q 010920          163 VIPCG  167 (497)
Q Consensus       163 Ll~~g  167 (497)
                      .|++.
T Consensus       277 vie~h  281 (296)
T KOG0502|consen  277 VIEKH  281 (296)
T ss_pred             HHHHH
Confidence            66543

>PHA02917 ankyrin-like protein; Provisional

Probab=99.85  E-value=3.1e-20  Score=197.89  Aligned_cols=196  Identities=10%  Similarity=-0.005  Sum_probs=156.2

Q ss_pred             HHHHHHHHHcCCCccccCCCCChHHHHHHHh--CCcHHHHHHHHHcCCCCCCcCc---------ccCCCH----HHHHHH
Q 010920           30 VDAIRALRSQGASLEWMDKEGKTPLIVACMD--SGLINVAKTLIELGANINAYRP---------AKRGLE----PTVRLL   94 (497)
Q Consensus        30 ~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~--g~~~~~v~~Ll~~ga~~~~~~~---------~~~g~~----~~v~~L   94 (497)
                      ++.|+.|+..|..++.+|.+|+||||+|+..  .++.++|++||++|++++..+.         +..|+.    +++++|
T Consensus        12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~L   91 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMAL   91 (661)
T ss_pred             HHHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHH
Confidence            5788999999999999999999999998664  1349999999999999998765         667774    456788


Q ss_pred             HhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHH-hhhcCCHHHHHHhhhCCCCCCCC
Q 010920           95 LSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEAL-APQLMSRKIWVVVIPCGTANPSK  173 (497)
Q Consensus        95 l~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~-A~~~~~~~iv~~Ll~~ga~~~~~  173 (497)
                      ++.+...+..+  ..+++|+|+..|+.++|++|+++|++++  .+|.+|+||||.+ |+..++.+++++|+++|++.+..
T Consensus        92 l~~~~~~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin--~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~  167 (661)
T PHA02917         92 LEATGYSNIND--FNIFSYMKSKNVDVDLIKVLVEHGFDLS--VKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYE  167 (661)
T ss_pred             HhccCCCCCCC--cchHHHHHhhcCCHHHHHHHHHcCCCCC--ccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccc
Confidence            87654344433  2377888999999999999999999999  8999999999943 34688999999999999987543


Q ss_pred             Cc--------------ccccccccCCc-----------Cc--CHHHHHHHhhcCCCCCCCCCCChHHHHHHhCCh--hHH
Q 010920          174 PL--------------RFELVIYPSLQ-----------DV--QPRAVIALWKAKIDEPKFHQPDPSLTIYDQATK--IRY  224 (497)
Q Consensus       174 ~~--------------~~~~~l~~~~~-----------~~--~~~~~~~l~~~~~~~~~~~g~~pl~~a~~~~~~--~~~  224 (497)
                      +.              ...++++.+..           .+  .+..++...|++++..+.+|.||||+|+.+++.  +.+
T Consensus       168 d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eiv  247 (661)
T PHA02917        168 DEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIV  247 (661)
T ss_pred             ccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHH
Confidence            21              12477776643           11  344555558999999999999999999999885  688


Q ss_pred             HHHHh
Q 010920          225 KFASA  229 (497)
Q Consensus       225 ~~l~~  229 (497)
                      ++|..
T Consensus       248 k~Li~  252 (661)
T PHA02917        248 KLLMK  252 (661)
T ss_pred             HHHHh
Confidence            88864

>PHA02792 ankyrin-like protein; Provisional

Probab=99.84  E-value=1.3e-19  Score=186.77  Aligned_cols=218  Identities=11%  Similarity=-0.028  Sum_probs=171.7

Q ss_pred             hcCCCchHHHHHHHcC-------CHHHHHHHHHcCCCccccCCCCChHHHHHHHhCC-cHHHHHHHHHcCC---------
Q 010920           13 QRQSKDELLYQWVIAG-------DVDAIRALRSQGASLEWMDKEGKTPLIVACMDSG-LINVAKTLIELGA---------   75 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~g-------~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~-~~~~v~~Ll~~ga---------   75 (497)
                      ++..|.||||+|+..+       +.+++++|+++|++++.+|..|.||||+|+.+.. ..|++++|+..--         
T Consensus       171 ~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l  250 (631)
T PHA02792        171 DDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNIL  250 (631)
T ss_pred             CCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHH
Confidence            4567999999999999       8999999999999999999999999999999840 4789999986311         


Q ss_pred             -------------CCCC--cCc-----------------------------------------ccC--CCHHHHHHHHhC
Q 010920           76 -------------NINA--YRP-----------------------------------------AKR--GLEPTVRLLLSC   97 (497)
Q Consensus        76 -------------~~~~--~~~-----------------------------------------~~~--g~~~~v~~Ll~~   97 (497)
                                   ++|.  .+.                                         ...  -+.+++++|+++
T Consensus       251 ~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~  330 (631)
T PHA02792        251 SNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDE  330 (631)
T ss_pred             HHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHC
Confidence                         0110  000                                         233  488999999999


Q ss_pred             CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCC--CCHHHHHhhhcCCH---HHHHHhhhCCCCCCC
Q 010920           98 GANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYG--PSFLEALAPQLMSR---KIWVVVIPCGTANPS  172 (497)
Q Consensus        98 ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G--~T~Lh~~A~~~~~~---~iv~~Ll~~ga~~~~  172 (497)
                      |++++  ......++|.|+..|+.++|++|+++|++++  .+|.+|  .|||| +|......   +++++|+++|++.+.
T Consensus       331 Ga~~~--r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN--~kD~~g~~~TpLh-~A~~n~~~~v~~IlklLIs~GADIN~  405 (631)
T PHA02792        331 GATLY--RFKHINKYFQKFDNRDPKVVEYILKNGNVVV--EDDDNIINIMPLF-PTLSIHESDVLSILKLCKPYIDDINK  405 (631)
T ss_pred             CCccc--cCCcchHHHHHHHcCCHHHHHHHHHcCCchh--hhcCCCCChhHHH-HHHHhccHhHHHHHHHHHhcCCcccc
Confidence            99875  2235668999999999999999999999998  777775  69999 77665554   468899999999999


Q ss_pred             CCcccccccccCCcCcCHH--HHHHHhhcCCCCCCCCCCChHHHHHH--hCC--------hhHHHHHHhCCCCHH
Q 010920          173 KPLRFELVIYPSLQDVQPR--AVIALWKAKIDEPKFHQPDPSLTIYD--QAT--------KIRYKFASANEGDKH  235 (497)
Q Consensus       173 ~~~~~~~~l~~~~~~~~~~--~~~~l~~~~~~~~~~~g~~pl~~a~~--~~~--------~~~~~~l~~~~~~~~  235 (497)
                      ++..+.++++.+...++..  .++...+++++..+..|.|||++|..  .+.        ...++++.....+..
T Consensus       406 kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        406 IDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIE  480 (631)
T ss_pred             ccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChh
Confidence            8888999999998766654  44555899999999999999999976  221        344566655555443

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.84  E-value=1.1e-20  Score=166.36  Aligned_cols=132  Identities=13%  Similarity=0.091  Sum_probs=107.7

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHHcCC--C-----ccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCccc
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGA--S-----LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAK   84 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga--~-----~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~   84 (497)
                      .++..|.||||+|++.|+.  +.+|+..+.  +     ++.+|..|+||||+|+..|. .+.                  
T Consensus        12 ~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~-~~~------------------   70 (154)
T PHA02736         12 EPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDK-ADP------------------   70 (154)
T ss_pred             hcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCc-hhH------------------
Confidence            4577999999999999984  344433322  2     34568899999999999743 322                  


Q ss_pred             CCCHHHHHHHHhCCCCCcccC-CCCCCHHHHHHHcCCHHHHHHHHH-CCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010920           85 RGLEPTVRLLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIES-HICYFCGWLREFYGPSFLEALAPQLMSRKIWVV  162 (497)
Q Consensus        85 ~g~~~~v~~Ll~~ga~~~~~~-~~g~T~Lh~A~~~g~~~~v~~Ll~-~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~  162 (497)
                         .+++++|+++|++++.++ ..|.||||+|+..|+.+++++|+. .|++++  .+|..|.|||| +|+..++.+++++
T Consensus        71 ---~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n--~~~~~g~tpL~-~A~~~~~~~i~~~  144 (154)
T PHA02736         71 ---QEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNME--ILNYAFKTPYY-VACERHDAKMMNI  144 (154)
T ss_pred             ---HHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc--cccCCCCCHHH-HHHHcCCHHHHHH
Confidence               234566677777777787 589999999999999999999998 599999  89999999999 9999999999999


Q ss_pred             hhhCCCCC
Q 010920          163 VIPCGTAN  170 (497)
Q Consensus       163 Ll~~ga~~  170 (497)
                      |+.+|++.
T Consensus       145 Ll~~ga~~  152 (154)
T PHA02736        145 LRAKGAQC  152 (154)
T ss_pred             HHHcCCCC
Confidence            99999875

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.83  E-value=1.5e-20  Score=190.14  Aligned_cols=213  Identities=21%  Similarity=0.145  Sum_probs=179.4

Q ss_pred             hhhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-------
Q 010920           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP-------   82 (497)
Q Consensus        10 ~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~-------   82 (497)
                      .+.||.+|.|+||.|+.+|+.+++++|+++.+-++..|..|.+|||+|+++|+ .++|++|+.++..+|..+-       
T Consensus        42 ~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~-~e~vkmll~q~d~~na~~~e~~tplh  120 (854)
T KOG0507|consen   42 HNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGN-LEIVKMLLLQTDILNAVNIENETPLH  120 (854)
T ss_pred             ccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCc-chHHHHHHhcccCCCcccccCcCccc
Confidence            35678999999999999999999999999999999999999999999999966 9999999999977777554       


Q ss_pred             --ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcc------cccccccCCCCHHHHHhhhc
Q 010920           83 --AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYF------CGWLREFYGPSFLEALAPQL  154 (497)
Q Consensus        83 --~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i------~~~~~~~~G~T~Lh~~A~~~  154 (497)
                        +..||.+++.+|+++|+++-.+|..+.|+|.+|++.|..++|++|++....+      ....++-.+.+||| .|+++
T Consensus       121 laaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plH-laakn  199 (854)
T KOG0507|consen  121 LAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLH-LAAKN  199 (854)
T ss_pred             hhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcc-hhhhc
Confidence              9999999999999999999999999999999999999999999999762211      11256778899999 99999


Q ss_pred             CCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHH--HHhhcCCCCCCCCCCChHHHHHHhCChhHHH
Q 010920          155 MSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVI--ALWKAKIDEPKFHQPDPSLTIYDQATKIRYK  225 (497)
Q Consensus       155 ~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~  225 (497)
                      |+.++++.|+..|.+++.... --+++|.+...+....+.  .-.+......+.+|+|+|....+.......+
T Consensus       200 gh~~~~~~ll~ag~din~~t~-~gtalheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~~~~~~e  271 (854)
T KOG0507|consen  200 GHVECMQALLEAGFDINYTTE-DGTALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQENRRYE  271 (854)
T ss_pred             chHHHHHHHHhcCCCcccccc-cchhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhcchhhhhh
Confidence            999999999999999988875 556666666555554443  3366777789999999998777765533333

>PHA02792 ankyrin-like protein; Provisional

Probab=99.83  E-value=9.5e-20  Score=187.73  Aligned_cols=216  Identities=12%  Similarity=0.040  Sum_probs=169.2

Q ss_pred             hcCCCchHHHHHHH-cCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------
Q 010920           13 QRQSKDELLYQWVI-AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------   82 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~-~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------   82 (497)
                      .|-+|.+++|+-+. .|+.++|++|+++||++|.++..|.||||+|+..+++.|++++|+++||+++..+.         
T Consensus        67 ~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~  146 (631)
T PHA02792         67 KNINDFDIFEYLCSDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQ  146 (631)
T ss_pred             CccCCccHHHHHHHhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhh
Confidence            36688889987665 78999999999999999999999999999998766789999999999998543111         


Q ss_pred             ------------------------------------ccCC-------CHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcC
Q 010920           83 ------------------------------------AKRG-------LEPTVRLLLSCGANALVRNDDCHTALGVARIKG  119 (497)
Q Consensus        83 ------------------------------------~~~g-------~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g  119 (497)
                                                          +..+       +.+++++|+++|++++..|..|.||||+|+.+.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~  226 (631)
T PHA02792        147 ITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKC  226 (631)
T ss_pred             cccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcc
Confidence                                                4444       699999999999999999999999999999765


Q ss_pred             --CHHHHHHHH---------------------------------------------------------------------
Q 010920          120 --HINVVRAIE---------------------------------------------------------------------  128 (497)
Q Consensus       120 --~~~~v~~Ll---------------------------------------------------------------------  128 (497)
                        ..+++++|+                                                                     
T Consensus       227 ~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  306 (631)
T PHA02792        227 DIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSI  306 (631)
T ss_pred             cchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHH
Confidence              445555554                                                                     


Q ss_pred             ----------------------HCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCccc--ccccccC
Q 010920          129 ----------------------SHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRF--ELVIYPS  184 (497)
Q Consensus       129 ----------------------~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~--~~~l~~~  184 (497)
                                            ++|+++.   + ......++ .|+..++.+++++|+++|++.+..+..+  .+++|.+
T Consensus       307 q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~---r-~~~~n~~~-~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A  381 (631)
T PHA02792        307 QDLLSEYVSYHTVYINVIKCMIDEGATLY---R-FKHINKYF-QKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPT  381 (631)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHCCCccc---c-CCcchHHH-HHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHH
Confidence                                  3344432   1 12455677 7889999999999999999987766433  4667654


Q ss_pred             CcCcCH-----HHHHHHhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCCC
Q 010920          185 LQDVQP-----RAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGD  233 (497)
Q Consensus       185 ~~~~~~-----~~~~~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~  233 (497)
                      ......     ..++...+++++..+..|.||||+|+..++.+.+++|...+.+
T Consensus       382 ~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GAD  435 (631)
T PHA02792        382 LSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGAD  435 (631)
T ss_pred             HHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCC
Confidence            433322     2233447899999999999999999999999999999877654

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.83  E-value=1.6e-20  Score=184.00  Aligned_cols=168  Identities=24%  Similarity=0.253  Sum_probs=143.4

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-----------
Q 010920           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP-----------   82 (497)
Q Consensus        14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~-----------   82 (497)
                      |.+|.|+||-++...+.+||++|+++|+++|..|..|+||||.|+.- +|+.++++|+++|+++-..+.           
T Consensus        70 n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaasc-g~~~i~~~li~~gA~~~avNsdg~~P~dl~e~  148 (527)
T KOG0505|consen   70 NVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASC-GYLNIVEYLIQHGANLLAVNSDGNMPYDLAED  148 (527)
T ss_pred             CCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhccc-ccHHHHHHHHHhhhhhhhccCCCCCccccccC
Confidence            45999999999999999999999999999999999999999999998 669999999999998666544           


Q ss_pred             -----------ccCC-------------CHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccc
Q 010920           83 -----------AKRG-------------LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWL  138 (497)
Q Consensus        83 -----------~~~g-------------~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~  138 (497)
                                 ...|             -..=+...+..|...+..+..|.|.||.|+.+|..++.++|+..|.+++  +
T Consensus       149 ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~--~  226 (527)
T KOG0505|consen  149 EATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVN--I  226 (527)
T ss_pred             cchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcc--c
Confidence                       0011             0111333445788888888889999999999999999999999999999  9


Q ss_pred             cccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCC
Q 010920          139 REFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSL  185 (497)
Q Consensus       139 ~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~  185 (497)
                      +|.+|+|||| +|+..+..+++++|+.+|++.+.....+.+++..+.
T Consensus       227 ~D~dgWtPlH-AAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~d  272 (527)
T KOG0505|consen  227 KDYDGWTPLH-AAAHWGQEDACELLVEHGADMDAKTKMGETPLDVAD  272 (527)
T ss_pred             ccccCCCccc-HHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchh
Confidence            9999999999 999999999999999999998776665666555444

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.82  E-value=9.2e-20  Score=200.05  Aligned_cols=212  Identities=13%  Similarity=0.077  Sum_probs=164.8

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc----ccCCCH
Q 010920           15 QSKDELLYQWVIAGDVDAIRALRSQ--GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP----AKRGLE   88 (497)
Q Consensus        15 ~~G~T~Lh~Aa~~g~~~~v~~Ll~~--ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~----~~~g~~   88 (497)
                      ..++++|+.|++.|+.+.|+.+++.  +.++|..|..|+||||+||..+++.+++++|+++|+..+..+.    +..+..
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~   94 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYV   94 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhccH
Confidence            4678899999999999999999998  8999999999999999544445779999999999972111111    444444


Q ss_pred             HHHHHHH----hCCCC------Cc----ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccc--------------
Q 010920           89 PTVRLLL----SCGAN------AL----VRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE--------------  140 (497)
Q Consensus        89 ~~v~~Ll----~~ga~------~~----~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~--------------  140 (497)
                      +.++.++    ..+.+      ++    ..+..|.||||+|+.+|+.++|++|+++|++++  .++              
T Consensus        95 ~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~--~~~~~~~~~~~~~~~~~  172 (743)
T TIGR00870        95 DAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVP--ARACGDFFVKSQGVDSF  172 (743)
T ss_pred             HHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC--cCcCCchhhcCCCCCcc
Confidence            4444443    33321      11    123579999999999999999999999999998  332              


Q ss_pred             cCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcC-----------HHHHHHHhhcCC-------C
Q 010920          141 FYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQ-----------PRAVIALWKAKI-------D  202 (497)
Q Consensus       141 ~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~l~~~~~-------~  202 (497)
                      .+|.|||| .|+..++.+++++|+++|++.+..+..+.+++|.+...+.           ...++...++..       +
T Consensus       173 ~~g~tpL~-~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~  251 (743)
T TIGR00870       173 YHGESPLN-AAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEV  251 (743)
T ss_pred             cccccHHH-HHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhh
Confidence            36999999 8999999999999999999988888889999998876641           122333333333       5


Q ss_pred             CCCCCCCChHHHHHHhCChhHHHHHHh
Q 010920          203 EPKFHQPDPSLTIYDQATKIRYKFASA  229 (497)
Q Consensus       203 ~~~~~g~~pl~~a~~~~~~~~~~~l~~  229 (497)
                      .+|..|.|||+.|+..++.+.++++.+
T Consensus       252 i~N~~g~TPL~~A~~~g~~~l~~lLL~  278 (743)
T TIGR00870       252 ILNHQGLTPLKLAAKEGRIVLFRLKLA  278 (743)
T ss_pred             hcCCCCCCchhhhhhcCCccHHHHHHH
Confidence            679999999999999999999988875

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.82  E-value=8.3e-20  Score=201.62  Aligned_cols=138  Identities=20%  Similarity=0.119  Sum_probs=126.9

Q ss_pred             hhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-------c
Q 010920           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP-------A   83 (497)
Q Consensus        11 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~-------~   83 (497)
                      +.+|..|.||||+||..|+.+++++|+++|+++|.+|.+|.||||+|+.. +|.+++++|++.++..+..+.       +
T Consensus       552 n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~-g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa  630 (823)
T PLN03192        552 DIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISA-KHHKIFRILYHFASISDPHAAGDLLCTAA  630 (823)
T ss_pred             CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHh-CCHHHHHHHHhcCcccCcccCchHHHHHH
Confidence            34567999999999999999999999999999999999999999999998 569999999998877665443       8


Q ss_pred             cCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCC-CCHHHHHhh
Q 010920           84 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYG-PSFLEALAP  152 (497)
Q Consensus        84 ~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G-~T~Lh~~A~  152 (497)
                      ..|+.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++  ..|..| .||++ .+.
T Consensus       631 ~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~--~~~~~g~~t~~~-l~~  697 (823)
T PLN03192        631 KRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVD--KANTDDDFSPTE-LRE  697 (823)
T ss_pred             HhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC--CCCCCCCCCHHH-HHH
Confidence            8999999999999999999999999999999999999999999999999999  788888 99999 553

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.81  E-value=8.1e-20  Score=170.42  Aligned_cols=151  Identities=15%  Similarity=0.201  Sum_probs=127.8

Q ss_pred             CccccCCCCChHHHHHHHhCCcHHHHHHHHHcC-CCCCCcCc--------------ccCCCHHHHHHHHhCCCCCccc-C
Q 010920           42 SLEWMDKEGKTPLIVACMDSGLINVAKTLIELG-ANINAYRP--------------AKRGLEPTVRLLLSCGANALVR-N  105 (497)
Q Consensus        42 ~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~g-a~~~~~~~--------------~~~g~~~~v~~Ll~~ga~~~~~-~  105 (497)
                      -+|..|.+|+|+||||+.++| +++|+.||+.| +++|.++.              -...+.++|+.|.+.| |+|.+ .
T Consensus       260 vVNlaDsNGNTALHYsVSHaN-F~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAs  337 (452)
T KOG0514|consen  260 VVNLADSNGNTALHYAVSHAN-FDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKAS  337 (452)
T ss_pred             HhhhhcCCCCeeeeeeecccc-hHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhh
Confidence            368899999999999999988 99999999986 68998887              3345677788887776 67776 4


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCC
Q 010920          106 DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSL  185 (497)
Q Consensus       106 ~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~  185 (497)
                      ..|+|+||+|+++|+.++|+.||..|+|+|  ++|.+|.|+|+ .|+..||++|+++|+...-                 
T Consensus       338 Q~gQTALMLAVSHGr~d~vk~LLacgAdVN--iQDdDGSTALM-CA~EHGhkEivklLLA~p~-----------------  397 (452)
T KOG0514|consen  338 QHGQTALMLAVSHGRVDMVKALLACGADVN--IQDDDGSTALM-CAAEHGHKEIVKLLLAVPS-----------------  397 (452)
T ss_pred             hhcchhhhhhhhcCcHHHHHHHHHccCCCc--cccCCccHHHh-hhhhhChHHHHHHHhccCc-----------------
Confidence            679999999999999999999999999999  99999999999 8999999999999997541                 


Q ss_pred             cCcCHHHHHHHhhcCCCCCCCCCCChHHHHHHhCChhHHHHH
Q 010920          186 QDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFA  227 (497)
Q Consensus       186 ~~~~~~~~~~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l  227 (497)
                                   .++...|.+|.|+|..|.+.++.++.-++
T Consensus       398 -------------cd~sLtD~DgSTAl~IAleagh~eIa~ml  426 (452)
T KOG0514|consen  398 -------------CDISLTDVDGSTALSIALEAGHREIAVML  426 (452)
T ss_pred             -------------ccceeecCCCchhhhhHHhcCchHHHHHH
Confidence                         33444556788888888888887776554

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.80  E-value=1e-18  Score=167.45  Aligned_cols=124  Identities=21%  Similarity=0.155  Sum_probs=92.8

Q ss_pred             cCCCch-HHHHHHHcCCHHHHHHHHHcCCCccccC----CCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCH
Q 010920           14 RQSKDE-LLYQWVIAGDVDAIRALRSQGASLEWMD----KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLE   88 (497)
Q Consensus        14 ~~~G~T-~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d----~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~   88 (497)
                      |..|.| +||.|++.|+.+++++|+++|+++|.++    ..|.||||+|+..|+ .+++++|+++||+++          
T Consensus        29 d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~-~eivklLL~~GADVN----------   97 (300)
T PHA02884         29 NKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDN-DDAAKLLIRYGADVN----------   97 (300)
T ss_pred             CcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCC-HHHHHHHHHcCCCcC----------
Confidence            445655 6677777799999999999999999874    589999999999844 666666666665554          


Q ss_pred             HHHHHHHhCCCCCccc-CCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhh
Q 010920           89 PTVRLLLSCGANALVR-NDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIP  165 (497)
Q Consensus        89 ~~v~~Ll~~ga~~~~~-~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~  165 (497)
                                    .+ +..|.||||+|+..++.+++++|+.+|++++  .+|..|.|||| .|+..++..++.++..
T Consensus        98 --------------~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin--~kd~~G~TpL~-~A~~~~~~~~~~~~~~  158 (300)
T PHA02884         98 --------------RYAEEAKITPLYISVLHGCLKCLEILLSYGADIN--IQTNDMVTPIE-LALMICNNFLAFMICD  158 (300)
T ss_pred             --------------cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHhCChhHHHHhcC
Confidence                          43 3457777777777777777777777777777  67777777777 6776666666655543

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.79  E-value=5.4e-20  Score=160.31  Aligned_cols=155  Identities=19%  Similarity=0.180  Sum_probs=122.9

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------cc
Q 010920           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AK   84 (497)
Q Consensus        14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~   84 (497)
                      +.+|..+++.|+-.|+...+..+|..|+..|..+..+.+|+++++.. .|++.+-.|.+..  +|..|.         +.
T Consensus        93 ~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhq-l~L~~~~~~~~n~--VN~~De~GfTpLiWAaa  169 (296)
T KOG0502|consen   93 DPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQ-LHLDVVDLLVNNK--VNACDEFGFTPLIWAAA  169 (296)
T ss_pred             CchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHH-HHHHHHHHHhhcc--ccCccccCchHhHHHHh
Confidence            45688888888888888888888888888888888888888888886 6677766666543  333333         77


Q ss_pred             CCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 010920           85 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI  164 (497)
Q Consensus        85 ~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll  164 (497)
                      .|+..+|++||+.||+++...++..|+|++|++.|..++|++|+.++.|+|  +.|-+|.|||. +|++.++.+|++.|+
T Consensus       170 ~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVN--vyDwNGgTpLl-yAvrgnhvkcve~Ll  246 (296)
T KOG0502|consen  170 KGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVN--VYDWNGGTPLL-YAVRGNHVKCVESLL  246 (296)
T ss_pred             cCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcc--eeccCCCceee-eeecCChHHHHHHHH
Confidence            788888888888888888888888888888888888888888888888888  78888888888 888888888888888


Q ss_pred             hCCCCCCCCC
Q 010920          165 PCGTANPSKP  174 (497)
Q Consensus       165 ~~ga~~~~~~  174 (497)
                      ..|++....+
T Consensus       247 ~sGAd~t~e~  256 (296)
T KOG0502|consen  247 NSGADVTQED  256 (296)
T ss_pred             hcCCCccccc
Confidence            8887765444

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.77  E-value=9.5e-19  Score=158.38  Aligned_cols=139  Identities=20%  Similarity=0.167  Sum_probs=113.9

Q ss_pred             chhhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCH
Q 010920            9 NQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLE   88 (497)
Q Consensus         9 ~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~   88 (497)
                      |.++-|..|.+|||+||+.||..+|+.||.+|+.+|..+....||||+|+.+ +|                        .
T Consensus        26 dln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaah-gh------------------------r   80 (448)
T KOG0195|consen   26 DLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAH-GH------------------------R   80 (448)
T ss_pred             ccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhc-cc------------------------H
Confidence            3344566899999999999999999999999999999998889999999998 43                        4


Q ss_pred             HHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCC
Q 010920           89 PTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGT  168 (497)
Q Consensus        89 ~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga  168 (497)
                      ++|+.||+..+|+|..+..|+|||||||..|...+.+-|+..|+.++  +.+++|.|||. .|.-.-...+.++--++|-
T Consensus        81 divqkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~--icnk~g~tpld-kakp~l~~~l~e~aek~gq  157 (448)
T KOG0195|consen   81 DIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVN--ICNKKGMTPLD-KAKPMLKNTLLEIAEKHGQ  157 (448)
T ss_pred             HHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceee--ecccCCCCchh-hhchHHHHHHHHHHHHhCC
Confidence            55555556667777889999999999999999999999999999999  89999999999 6644333344444456776


Q ss_pred             CCCCCCc
Q 010920          169 ANPSKPL  175 (497)
Q Consensus       169 ~~~~~~~  175 (497)
                      ..+..++
T Consensus       158 ~~nripf  164 (448)
T KOG0195|consen  158 SPNRIPF  164 (448)
T ss_pred             CCCcccc
Confidence            6665554

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.73  E-value=1.8e-17  Score=139.40  Aligned_cols=139  Identities=19%  Similarity=0.086  Sum_probs=106.6

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHH
Q 010920           17 KDELLYQWVIAGDVDAIRALRSQGA-SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLL   95 (497)
Q Consensus        17 G~T~Lh~Aa~~g~~~~v~~Ll~~ga-~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll   95 (497)
                      -.--+.+|+..+.+..|+.||+..+ .+|.+|.+|+||||-|+.+ +|++||+.|+                        
T Consensus        63 p~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn-~h~div~~ll------------------------  117 (228)
T KOG0512|consen   63 PIRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYN-GHLDIVHELL------------------------  117 (228)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhc-CchHHHHHHH------------------------
Confidence            3346789999999999999999886 4899999999999999997 6566555555                        


Q ss_pred             hCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhh-CCCCCCCCC
Q 010920           96 SCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIP-CGTANPSKP  174 (497)
Q Consensus        96 ~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~-~ga~~~~~~  174 (497)
                      ..||+++.+...|+||||-|+...+.+++-.|+++|++|+  .......||||+.|-.++....+.+|+. .+...+...
T Consensus       118 ~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVn--A~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~n  195 (228)
T KOG0512|consen  118 LSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVN--AQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKN  195 (228)
T ss_pred             HccCCcccccccCccchhhhhcccchhHHHHHHhccCccc--ccccccchhhHHhhcccchHHHHHHHhhccccChhhhc
Confidence            4555666778899999999999999999999999999999  7878889999944444455666776663 344443333


Q ss_pred             cccccccc
Q 010920          175 LRFELVIY  182 (497)
Q Consensus       175 ~~~~~~l~  182 (497)
                      ...++++.
T Consensus       196 n~eeta~~  203 (228)
T KOG0512|consen  196 NLEETAFD  203 (228)
T ss_pred             CccchHHH
Confidence            33334333

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.72  E-value=4e-17  Score=145.08  Aligned_cols=107  Identities=17%  Similarity=0.073  Sum_probs=89.9

Q ss_pred             hhcCCCchHHHHHHHcCCHHH---HHHHHHcCCCccccC-CCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCC
Q 010920           12 QQRQSKDELLYQWVIAGDVDA---IRALRSQGASLEWMD-KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGL   87 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~---v~~Ll~~ga~~n~~d-~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~   87 (497)
                      .++..|+||||+|+..|+.+.   +++|+++|+++|.++ ..|.||||+|+..|+ .+++++|+.               
T Consensus        52 ~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~-~~iv~~Ll~---------------  115 (166)
T PHA02743         52 RYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKN-YELAEWLCR---------------  115 (166)
T ss_pred             ccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCC-HHHHHHHHh---------------
Confidence            357799999999999988654   899999999999998 589999999999854 555554442               


Q ss_pred             HHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCC
Q 010920           88 EPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGP  144 (497)
Q Consensus        88 ~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~  144 (497)
                              +.|++++.++..|.||||+|+..++.+++++|+++|++++  .++..|.
T Consensus       116 --------~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~--~~~~~~~  162 (166)
T PHA02743        116 --------QLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCD--DPLSIGL  162 (166)
T ss_pred             --------ccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcccCCc
Confidence                    2466677789999999999999999999999999999998  6666664

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.72  E-value=8e-17  Score=163.45  Aligned_cols=210  Identities=18%  Similarity=0.103  Sum_probs=179.1

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcC-------------CCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc--
Q 010920           18 DELLYQWVIAGDVDAIRALRSQG-------------ASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP--   82 (497)
Q Consensus        18 ~T~Lh~Aa~~g~~~~v~~Ll~~g-------------a~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~--   82 (497)
                      .+=|.-|++.|+++.+..||+..             -..|..|.+|.|+||+|+.+| +.+++++|+++.+-++..+.  
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng-~~~is~llle~ea~ldl~d~kg   82 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNG-QNQISKLLLDYEALLDLCDTKG   82 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcC-chHHHHHHhcchhhhhhhhccC
Confidence            34678899999999999999741             235778999999999999995 59999999999887766554  


Q ss_pred             -------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcC
Q 010920           83 -------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM  155 (497)
Q Consensus        83 -------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~  155 (497)
                             ++.|+.+++++|+.++..+|..+-.|.||||.|++.||.+++.+|+.+|++.-  ..|..+.|+|. +|++.|
T Consensus        83 ~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~--i~nns~~t~ld-lA~qfg  159 (854)
T KOG0507|consen   83 ILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPF--IRNNSKETVLD-LASRFG  159 (854)
T ss_pred             cceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCcc--ccCcccccHHH-HHHHhh
Confidence                   89999999999999999999999999999999999999999999999999998  89999999999 999999


Q ss_pred             CHHHHHHhhhCCCC--------CCCCCcccccccccCCcCcCHHHHHHH--hhcCCCCCCCCCCChHHHHHHhCChhHHH
Q 010920          156 SRKIWVVVIPCGTA--------NPSKPLRFELVIYPSLQDVQPRAVIAL--WKAKIDEPKFHQPDPSLTIYDQATKIRYK  225 (497)
Q Consensus       156 ~~~iv~~Ll~~ga~--------~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~g~~pl~~a~~~~~~~~~~  225 (497)
                      ..++++.|++....        ...+++.+.+++|.+.++++...+..+  .+.+++.....| ++||.|..-+..+++.
T Consensus       160 r~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr  238 (854)
T KOG0507|consen  160 RAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVR  238 (854)
T ss_pred             hhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhh
Confidence            99999999876322        234455688999999999998887776  555666655544 7899999999999998


Q ss_pred             HHHhCCC
Q 010920          226 FASANEG  232 (497)
Q Consensus       226 ~l~~~~~  232 (497)
                      ++.+...
T Consensus       239 ~ll~~gi  245 (854)
T KOG0507|consen  239 FLLEIGI  245 (854)
T ss_pred             HHHhhcc
Confidence            8885543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.72  E-value=2.5e-17  Score=171.67  Aligned_cols=216  Identities=21%  Similarity=0.186  Sum_probs=183.5

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc----------c
Q 010920           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP----------A   83 (497)
Q Consensus        14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~----------~   83 (497)
                      +.+-+|+|-.||..||.++|++|+.+|+++..+|+.|.+||.+|+-. +|..+|+.|+++.++++.+..          +
T Consensus       754 e~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaata-gh~tvV~~llk~ha~veaQsdrtkdt~lSlac  832 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATA-GHITVVQDLLKAHADVEAQSDRTKDTMLSLAC  832 (2131)
T ss_pred             CccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhccc-CchHHHHHHHhhhhhhhhhcccccCceEEEec
Confidence            45678999999999999999999999999999999999999999996 679999999999999988755          6


Q ss_pred             cCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHh
Q 010920           84 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV  163 (497)
Q Consensus        84 ~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~L  163 (497)
                      ..|+.++|++||..|++-..++...+|||.+|..-|..++|.+|+..|+.|+...-.+.|..||+ +|.++|+...++.|
T Consensus       833 sggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLm-latmngh~~at~~l  911 (2131)
T KOG4369|consen  833 SGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLM-LATMNGHQAATLSL  911 (2131)
T ss_pred             CCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhh-hhhhccccHHHHHH
Confidence            77899999999999999888999999999999999999999999999999985556778999999 99999999999999


Q ss_pred             hhCCCCCCCC-CcccccccccCCc--CcCHHHHHHHhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCC
Q 010920          164 IPCGTANPSK-PLRFELVIYPSLQ--DVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANE  231 (497)
Q Consensus       164 l~~ga~~~~~-~~~~~~~l~~~~~--~~~~~~~~~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~  231 (497)
                      ++.|.+++.. +....+++-.+.-  +.++..+++-..+.++..-..|-|||+-++..+..++-.+|...+
T Consensus       912 l~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~g  982 (2131)
T KOG4369|consen  912 LQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAG  982 (2131)
T ss_pred             hcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcc
Confidence            9999886532 2223334333332  334444444477888888899999999999998888877777443

>PHA02741 hypothetical protein; Provisional

Probab=99.71  E-value=1.7e-16  Score=141.70  Aligned_cols=134  Identities=11%  Similarity=0.026  Sum_probs=109.1

Q ss_pred             ccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCC--
Q 010920           43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH--  120 (497)
Q Consensus        43 ~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~--  120 (497)
                      ++.+|..|.||||+|+..|+ .+++++|+.....                  ...|++++.+|..|.||||+|+..|+  
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~-~~~v~~l~~~~~~------------------~~~ga~in~~d~~g~T~Lh~A~~~g~~~   74 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGC-FDIIARFTPFIRG------------------DCHAAALNATDDAGQMCIHIAAEKHEAQ   74 (169)
T ss_pred             hhccccCCCCHHHHHHHcCC-HHHHHHHHHHhcc------------------chhhhhhhccCCCCCcHHHHHHHcCChH
Confidence            34578899999999999855 8888887643100                  12456778899999999999999999  


Q ss_pred             --HHHHHHHHHCCCccccccccc-CCCCHHHHHhhhcCCHHHHHHhhh-CCCCCCCCCcccccccccCCcCcCHHHHHHH
Q 010920          121 --INVVRAIESHICYFCGWLREF-YGPSFLEALAPQLMSRKIWVVVIP-CGTANPSKPLRFELVIYPSLQDVQPRAVIAL  196 (497)
Q Consensus       121 --~~~v~~Ll~~g~~i~~~~~~~-~G~T~Lh~~A~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l  196 (497)
                        .+++++|+++|++++  .++. .|.|||| +|+..++.+++++|+. .|++.                          
T Consensus        75 ~~~~ii~~Ll~~gadin--~~~~~~g~TpLh-~A~~~~~~~iv~~Ll~~~g~~~--------------------------  125 (169)
T PHA02741         75 LAAEIIDHLIELGADIN--AQEMLEGDTALH-LAAHRRDHDLAEWLCCQPGIDL--------------------------  125 (169)
T ss_pred             HHHHHHHHHHHcCCCCC--CCCcCCCCCHHH-HHHHcCCHHHHHHHHhCCCCCC--------------------------
Confidence              589999999999999  7775 9999999 9999999999999997 47554                          


Q ss_pred             hhcCCCCCCCCCCChHHHHHHhCChhHHHHHHh
Q 010920          197 WKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA  229 (497)
Q Consensus       197 ~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~  229 (497)
                           +..+..|.|||++|...+....+++|..
T Consensus       126 -----~~~n~~g~tpL~~A~~~~~~~iv~~L~~  153 (169)
T PHA02741        126 -----HFCNADNKSPFELAIDNEDVAMMQILRE  153 (169)
T ss_pred             -----CcCCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence                 3334578899999999998888877754

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.71  E-value=7.1e-18  Score=175.64  Aligned_cols=223  Identities=18%  Similarity=0.148  Sum_probs=149.6

Q ss_pred             hhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-------
Q 010920           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWM-DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP-------   82 (497)
Q Consensus        11 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~-d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~-------   82 (497)
                      +.+++.|.+||.+|+-.||..+|+.|+.+.+++++. |..+.|+|-+||.- +..++|++||.+|++-..++-       
T Consensus       784 ehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsg-gr~~vvelLl~~gankehrnvsDytPls  862 (2131)
T KOG4369|consen  784 EHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSG-GRTRVVELLLNAGANKEHRNVSDYTPLS  862 (2131)
T ss_pred             cccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCC-CcchHHHHHHHhhccccccchhhcCchh
Confidence            345666666666666666666666666666665543 44555666666653 346666666666655433322       


Q ss_pred             --ccCCCHHHHHHHHhCCCCCcccC--CCCCCHHHHHHHc----------------------------------CCHHHH
Q 010920           83 --AKRGLEPTVRLLLSCGANALVRN--DDCHTALGVARIK----------------------------------GHINVV  124 (497)
Q Consensus        83 --~~~g~~~~v~~Ll~~ga~~~~~~--~~g~T~Lh~A~~~----------------------------------g~~~~v  124 (497)
                        ...|..++|++|+.+|+.||.+.  +.|..||++|..+                                  |+.++|
T Consensus       863 la~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv  942 (2131)
T KOG4369|consen  863 LARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVV  942 (2131)
T ss_pred             hhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHH
Confidence              33345555555555555555432  3455555555554                                  555555


Q ss_pred             HHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCc--ccccccccCCcCcCHHHHHHH--hhcC
Q 010920          125 RAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPL--RFELVIYPSLQDVQPRAVIAL--WKAK  200 (497)
Q Consensus       125 ~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~--~~~~~l~~~~~~~~~~~~~~l--~~~~  200 (497)
                      .+||.+.+++.  .+-+.|.|||+ -++..|+.++-++||..|+|.+..+.  ...+++-+....++...+-.+  ..+.
T Consensus       943 ~lLLa~~anve--hRaktgltplm-e~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~at 1019 (2131)
T KOG4369|consen  943 FLLLAAQANVE--HRAKTGLTPLM-EMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDAT 1019 (2131)
T ss_pred             HHHHHHhhhhh--hhcccCCcccc-hhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccc
Confidence            55555555554  56667999999 89999999999999999999877664  466777777777776555544  4567


Q ss_pred             CCCCCCCCCChHHHHHHhCChhHHHHHHhCCCCHHHH
Q 010920          201 IDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQL  237 (497)
Q Consensus       201 ~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~~~~~  237 (497)
                      +..++.+|.|+|.+|...+....+.++.+...|.++.
T Consensus      1020 v~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~q 1056 (2131)
T KOG4369|consen 1020 VRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQQ 1056 (2131)
T ss_pred             eecccCCCCcccchhccCCccccchHHhhcccChhhh
Confidence            8899999999999999999999999999887766544

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.71  E-value=1e-16  Score=127.04  Aligned_cols=86  Identities=23%  Similarity=0.351  Sum_probs=72.5

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCC
Q 010920           21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGAN  100 (497)
Q Consensus        21 Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~  100 (497)
                      ||+|++.|+.+++++|++.+.+++.    |.||||+|+..|+ .+++++|+                        ++|++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~-~~~~~~Ll------------------------~~g~~   51 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGN-LEIVKLLL------------------------ENGAD   51 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTT-HHHHHHHH------------------------HTTTC
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCC-HHHHHHHH------------------------Hhccc
Confidence            7999999999999999999988866    8899999999844 55555554                        55566


Q ss_pred             CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCccc
Q 010920          101 ALVRNDDCHTALGVARIKGHINVVRAIESHICYFC  135 (497)
Q Consensus       101 ~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~  135 (497)
                      ++.+|..|+||||+|+.+|+.+++++|+++|++++
T Consensus        52 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~   86 (89)
T PF12796_consen   52 INSQDKNGNTALHYAAENGNLEIVKLLLEHGADVN   86 (89)
T ss_dssp             TT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-TT
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            66788999999999999999999999999999997

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.70  E-value=3.7e-16  Score=131.41  Aligned_cols=124  Identities=24%  Similarity=0.351  Sum_probs=109.7

Q ss_pred             hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHH
Q 010920           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVR   92 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~   92 (497)
                      .+..|.||||+|++.|+.+++++|++.|.+.+..+..|.||||+|+..++ .+++++|+.                    
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~-~~~~~~ll~--------------------   61 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGH-LEIVKLLLE--------------------   61 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCC-HHHHHHHHH--------------------
Confidence            46789999999999999999999999999988999999999999999855 555555554                    


Q ss_pred             HHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 010920           93 LLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI  164 (497)
Q Consensus        93 ~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll  164 (497)
                          .+++++..+..|.||+|+|+..++.+++++|+.++.+++  ..+..|.|||+ .|...++.+++++|+
T Consensus        62 ----~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~--~~~~~~~~~l~-~~~~~~~~~~~~~Ll  126 (126)
T cd00204          62 ----KGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVN--ARDKDGRTPLH-LAAKNGHLEVVKLLL  126 (126)
T ss_pred             ----cCCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHhcCCHHHHHHhC
Confidence                444556677889999999999999999999999998888  78999999999 899999999999875

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.69  E-value=1.1e-16  Score=175.81  Aligned_cols=177  Identities=14%  Similarity=0.065  Sum_probs=127.9

Q ss_pred             hhcCCCchHHH-HHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHh--CCcHHHHHHHHHcCCC------CCC---
Q 010920           12 QQRQSKDELLY-QWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD--SGLINVAKTLIELGAN------INA---   79 (497)
Q Consensus        12 ~~~~~G~T~Lh-~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~--g~~~~~v~~Ll~~ga~------~~~---   79 (497)
                      ..|..|+|||| .|+..++.+++++|+++|+    ++..|.||||+|+..  ++...++++|...+.+      ++.   
T Consensus        47 ~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~  122 (743)
T TIGR00870        47 CPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYT  122 (743)
T ss_pred             CcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccc
Confidence            34578999999 8889999999999999987    567889999988872  1222334444443322      111   


Q ss_pred             ------cCc----ccCCCHHHHHHHHhCCCCCcccC--------------CCCCCHHHHHHHcCCHHHHHHHHHCCCccc
Q 010920           80 ------YRP----AKRGLEPTVRLLLSCGANALVRN--------------DDCHTALGVARIKGHINVVRAIESHICYFC  135 (497)
Q Consensus        80 ------~~~----~~~g~~~~v~~Ll~~ga~~~~~~--------------~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~  135 (497)
                            .+.    +..|+.++|++|+++|++++.++              ..|.||||+|+..|+.+++++|+++|++++
T Consensus       123 ~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin  202 (743)
T TIGR00870       123 SEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADIL  202 (743)
T ss_pred             cccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchh
Confidence                  011    77889999999999999888653              358899999999999999999999999988


Q ss_pred             ccccccCCCCHHHHHhhhcC---------CHHHHHHhhhCCCCC-------CCCCcccccccccCCcCcCHHHHHH
Q 010920          136 GWLREFYGPSFLEALAPQLM---------SRKIWVVVIPCGTAN-------PSKPLRFELVIYPSLQDVQPRAVIA  195 (497)
Q Consensus       136 ~~~~~~~G~T~Lh~~A~~~~---------~~~iv~~Ll~~ga~~-------~~~~~~~~~~l~~~~~~~~~~~~~~  195 (497)
                        .+|..|+|||| +|+..+         ...+.++++..++..       ...+..+.++++.+...++...+..
T Consensus       203 --~~d~~g~T~Lh-~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~l  275 (743)
T TIGR00870       203 --TADSLGNTLLH-LLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRL  275 (743)
T ss_pred             --hHhhhhhHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHH
Confidence              78999999999 777765         234556666665543       2334467788888877766544433

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.69  E-value=1e-16  Score=134.92  Aligned_cols=117  Identities=20%  Similarity=0.192  Sum_probs=95.3

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHH
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTV   91 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v   91 (497)
                      .+|.+|.||||.|+++||.+||+.|+..||+++.+...|+||||-||.-.| .                        +++
T Consensus        92 trD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN-~------------------------~va  146 (228)
T KOG0512|consen   92 TRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNN-F------------------------EVA  146 (228)
T ss_pred             ccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccc-h------------------------hHH
Confidence            356799999999999999999999999999999999999999999999855 4                        455


Q ss_pred             HHHHhCCCCCcccCCCCCCHHHHHHHcCCH-HHHHHHH-HCCCcccccccccCCCCHHHHHhhhcCC
Q 010920           92 RLLLSCGANALVRNDDCHTALGVARIKGHI-NVVRAIE-SHICYFCGWLREFYGPSFLEALAPQLMS  156 (497)
Q Consensus        92 ~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~-~~v~~Ll-~~g~~i~~~~~~~~G~T~Lh~~A~~~~~  156 (497)
                      .+||++|+|+|+......||||+|+...+. ..+++|+ .++.+..  .++..+.||+. +|-+.+-
T Consensus       147 ~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg--~~nn~eeta~~-iARRT~~  210 (228)
T KOG0512|consen  147 GRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPG--LKNNLEETAFD-IARRTSM  210 (228)
T ss_pred             HHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChh--hhcCccchHHH-HHHHhhh
Confidence            555555566667778889999999977665 4567665 4556665  78999999999 7866543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.66  E-value=2.9e-16  Score=138.02  Aligned_cols=100  Identities=16%  Similarity=0.129  Sum_probs=85.1

Q ss_pred             hhcCCCchHHHHHHHcCCH---HHHHHHHHcCCCccccC-CCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCC
Q 010920           12 QQRQSKDELLYQWVIAGDV---DAIRALRSQGASLEWMD-KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGL   87 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~---~~v~~Ll~~ga~~n~~d-~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~   87 (497)
                      .+|..|.||||+|+..|+.   +++++|++.|+++|.++ ..|.||||+|+..|+ .+++++|+.+              
T Consensus        50 ~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~-~~i~~~Ll~~--------------  114 (154)
T PHA02736         50 EYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQN-YELATWLCNQ--------------  114 (154)
T ss_pred             HhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCC-HHHHHHHHhC--------------
Confidence            3578999999999999987   46889999999999998 489999999999854 5555554432              


Q ss_pred             HHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCccc
Q 010920           88 EPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC  135 (497)
Q Consensus        88 ~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~  135 (497)
                               .|++++.+|..|.||||+|+..|+.+++++|+.+|++.+
T Consensus       115 ---------~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        115 ---------PGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             ---------CCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence                     356777789999999999999999999999999998875

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.65  E-value=1.6e-15  Score=145.47  Aligned_cols=148  Identities=10%  Similarity=0.005  Sum_probs=110.1

Q ss_pred             CccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCH
Q 010920           42 SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI  121 (497)
Q Consensus        42 ~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~  121 (497)
                      .+..+|..|.|+++++|...++.+++++|+++|++++..+.                    ..+..|.||||+|+..++.
T Consensus        24 ~~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~--------------------~sd~~g~TpLh~Aa~~~~~   83 (300)
T PHA02884         24 AIKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFP--------------------LSENSKTNPLIYAIDCDND   83 (300)
T ss_pred             HhhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCc--------------------ccCCCCCCHHHHHHHcCCH
Confidence            35567888887665555544556777766666665553210                    1256899999999999999


Q ss_pred             HHHHHHHHCCCccccccc-ccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcC
Q 010920          122 NVVRAIESHICYFCGWLR-EFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAK  200 (497)
Q Consensus       122 ~~v~~Ll~~g~~i~~~~~-~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~  200 (497)
                      +++++|+++|++++  .+ +..|.|||| .|+..++.+++++|+.+|++.+..+..+.++++.+...........+.+..
T Consensus        84 eivklLL~~GADVN--~~~~~~g~TpLh-~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~~  160 (300)
T PHA02884         84 DAAKLLIRYGADVN--RYAEEAKITPLY-ISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDNE  160 (300)
T ss_pred             HHHHHHHHcCCCcC--cccCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCCc
Confidence            99999999999999  64 568999999 999999999999999999999888877889998887644444333333322


Q ss_pred             CCCCCCCCCChHHHH
Q 010920          201 IDEPKFHQPDPSLTI  215 (497)
Q Consensus       201 ~~~~~~~g~~pl~~a  215 (497)
                         .+..+.+|+.+.
T Consensus       161 ---~~~~~~~~~~~~  172 (300)
T PHA02884        161 ---ISNFYKHPKKIL  172 (300)
T ss_pred             ---ccccccChhhhh
Confidence               455566777654

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.64  E-value=1.1e-16  Score=145.09  Aligned_cols=134  Identities=24%  Similarity=0.199  Sum_probs=112.4

Q ss_pred             HHHcCCHHHHHHHHH-cCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCc
Q 010920           24 WVIAGDVDAIRALRS-QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANAL  102 (497)
Q Consensus        24 Aa~~g~~~~v~~Ll~-~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~  102 (497)
                      -|+.|+.--|++.|. ..-|+|.-|..|.+||||||.. +|                        ..+++.||..|+.+|
T Consensus         7 wcregna~qvrlwld~tehdln~gddhgfsplhwaake-gh------------------------~aivemll~rgarvn   61 (448)
T KOG0195|consen    7 WCREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKE-GH------------------------VAIVEMLLSRGARVN   61 (448)
T ss_pred             hhhcCCeEEEEEEecCcccccccccccCcchhhhhhhc-cc------------------------HHHHHHHHhcccccc
Confidence            356666666665554 4578999999999999999996 43                        455555666667777


Q ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccc
Q 010920          103 VRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY  182 (497)
Q Consensus       103 ~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~  182 (497)
                      ..+....||||+|+..||.++|+.|+++.+|+|  ..+..|.|||| +|+..|+..+++-|+..|+..+..+..+.+++.
T Consensus        62 ~tnmgddtplhlaaahghrdivqkll~~kadvn--avnehgntplh-yacfwgydqiaedli~~ga~v~icnk~g~tpld  138 (448)
T KOG0195|consen   62 STNMGDDTPLHLAAAHGHRDIVQKLLSRKADVN--AVNEHGNTPLH-YACFWGYDQIAEDLISCGAAVNICNKKGMTPLD  138 (448)
T ss_pred             cccCCCCcchhhhhhcccHHHHHHHHHHhcccc--hhhccCCCchh-hhhhhcHHHHHHHHHhccceeeecccCCCCchh
Confidence            788888999999999999999999999999999  89999999999 999999999999999999988777777777766


Q ss_pred             cCC
Q 010920          183 PSL  185 (497)
Q Consensus       183 ~~~  185 (497)
                      .+.
T Consensus       139 kak  141 (448)
T KOG0195|consen  139 KAK  141 (448)
T ss_pred             hhc
Confidence            554

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.63  E-value=1.6e-15  Score=149.06  Aligned_cols=197  Identities=21%  Similarity=0.220  Sum_probs=162.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccCCCHHH
Q 010920           20 LLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKRGLEPT   90 (497)
Q Consensus        20 ~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~g~~~~   90 (497)
                      .+.-|+..|..+-|+.|+..|+++|..+.+|.|+||-+|.. .+.+||++|+++|++||..+.         +..||..+
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id-~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i  121 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACID-DNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNI  121 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhc-ccHHHHHHHHHhcCCccccccccCCcchhhcccccHHH
Confidence            46677889999999999999999999999999999999998 559999999999999999877         88899999


Q ss_pred             HHHHHhCCCCCcccCCCCCCHHHHHHHcCCHH--------------------------HHHHHHHCCCcccccccccCCC
Q 010920           91 VRLLLSCGANALVRNDDCHTALGVARIKGHIN--------------------------VVRAIESHICYFCGWLREFYGP  144 (497)
Q Consensus        91 v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~--------------------------~v~~Ll~~g~~i~~~~~~~~G~  144 (497)
                      +++|+.+|+++...|..|..|+.++......+                          =++..+..|...+  ..+..|.
T Consensus       122 ~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d--~~~~rG~  199 (527)
T KOG0505|consen  122 VEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELD--ARHARGA  199 (527)
T ss_pred             HHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccccc--ccccccc
Confidence            99999999998888888877776543221111                          1233334576666  6666799


Q ss_pred             CHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCc--CHHHHHHHhhcCCCCCCCCCCChHHHHHHhCC
Q 010920          145 SFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDV--QPRAVIALWKAKIDEPKFHQPDPSLTIYDQAT  220 (497)
Q Consensus       145 T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~--~~~~~~~l~~~~~~~~~~~g~~pl~~a~~~~~  220 (497)
                      |+|| +|+.+|+.++.++|+.+|.+....+..+.+++|.+.-=+  ....++..++++.+.....|.+|+.++.+.-.
T Consensus       200 T~lH-vAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~dee~~  276 (527)
T KOG0505|consen  200 TALH-VAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADEEEL  276 (527)
T ss_pred             hHHH-HHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhhhhH
Confidence            9999 999999999999999999998888888888888766322  34557777999999999999999998877544

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.61  E-value=2.4e-15  Score=154.79  Aligned_cols=150  Identities=19%  Similarity=0.212  Sum_probs=130.9

Q ss_pred             hcCCCchHHHHHHH---cCCHHHHHHHHHcCCC-ccc----cCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc--
Q 010920           13 QRQSKDELLYQWVI---AGDVDAIRALRSQGAS-LEW----MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP--   82 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~---~g~~~~v~~Ll~~ga~-~n~----~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~--   82 (497)
                      |-..|+|.||.|..   .++.++++.|++.-.. +|.    ....|+||||+|+.+.+ .++|++|++.||||+.+-.  
T Consensus       139 RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~-~~~V~lLl~~gADV~aRa~G~  217 (782)
T KOG3676|consen  139 RGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRD-AELVRLLLAAGADVHARACGA  217 (782)
T ss_pred             ccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhcc-HHHHHHHHHcCCchhhHhhcc
Confidence            45589999999998   4567999999986321 111    23469999999999955 9999999999999998532  


Q ss_pred             ------------------------------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Q 010920           83 ------------------------------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC  132 (497)
Q Consensus        83 ------------------------------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~  132 (497)
                                                    +..+.++++++|+++|||++.+|..|+|.||..+..-..+.-.+++++|+
T Consensus       218 FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga  297 (782)
T KOG3676|consen  218 FFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGA  297 (782)
T ss_pred             ccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence                                          67789999999999999999999999999999999988899999999999


Q ss_pred             c--ccccccccCCCCHHHHHhhhcCCHHHHHHhhhC
Q 010920          133 Y--FCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC  166 (497)
Q Consensus       133 ~--i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~  166 (497)
                      +  ..  ++|..|.|||. +|+..|..++.+.+++.
T Consensus       298 ~~l~~--v~N~qgLTPLt-LAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  298 NALEH--VRNNQGLTPLT-LAAKLGKKEMFQHILER  330 (782)
T ss_pred             Ccccc--ccccCCCChHH-HHHHhhhHHHHHHHHHh
Confidence            9  66  89999999999 99999999999999987

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.60  E-value=6.5e-15  Score=116.62  Aligned_cols=88  Identities=20%  Similarity=0.252  Sum_probs=73.7

Q ss_pred             HHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCc
Q 010920           54 LIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY  133 (497)
Q Consensus        54 Lh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~  133 (497)
                      ||+|+.+|+ .+++++|++.                        +.+++.    |.||||+|+.+|+.+++++|+++|++
T Consensus         1 L~~A~~~~~-~~~~~~ll~~------------------------~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~   51 (89)
T PF12796_consen    1 LHIAAQNGN-LEILKFLLEK------------------------GADINL----GNTALHYAAENGNLEIVKLLLENGAD   51 (89)
T ss_dssp             HHHHHHTTT-HHHHHHHHHT------------------------TSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTC
T ss_pred             CHHHHHcCC-HHHHHHHHHC------------------------cCCCCC----CCCHHHHHHHcCCHHHHHHHHHhccc
Confidence            789999854 6666655554                        444443    88999999999999999999999999


Q ss_pred             ccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCC
Q 010920          134 FCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSK  173 (497)
Q Consensus       134 i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~  173 (497)
                      ++  .+|..|+|||| .|+..++.+++++|+++|++.+.+
T Consensus        52 ~~--~~~~~g~t~L~-~A~~~~~~~~~~~Ll~~g~~~~~~   88 (89)
T PF12796_consen   52 IN--SQDKNGNTALH-YAAENGNLEIVKLLLEHGADVNIR   88 (89)
T ss_dssp             TT---BSTTSSBHHH-HHHHTTHHHHHHHHHHTTT-TTSS
T ss_pred             cc--ccCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCCCc
Confidence            99  89999999999 999999999999999999987654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.55  E-value=5.1e-14  Score=131.33  Aligned_cols=132  Identities=23%  Similarity=0.285  Sum_probs=116.5

Q ss_pred             hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHH
Q 010920           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVR   92 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~   92 (497)
                      ++..+.+++|.++..+..+++++|+..|++++.++..|.||||+|+..|+.                    ..++.++++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~--------------------~~~~~~~~~  128 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNP--------------------PEGNIEVAK  128 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCc--------------------ccchHHHHH
Confidence            355689999999999999999999999999999999999999999998441                    123456666


Q ss_pred             HHHhCCC---CCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCC
Q 010920           93 LLLSCGA---NALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCG  167 (497)
Q Consensus        93 ~Ll~~ga---~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~g  167 (497)
                      +|++.|+   ..+.+|..|.||||+|+..|+.+++++|++.|++++  ..+..|.|+|+ .|+..++.++++.|+..+
T Consensus       129 ~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~--~~~~~g~t~l~-~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         129 LLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPN--SRNSYGVTALD-PAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             HHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCc--ccccCCCcchh-hhcccchHHHHHHHHhcC
Confidence            6666666   455679999999999999999999999999999999  78999999999 999999999999999977

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.55  E-value=1.7e-14  Score=108.67  Aligned_cols=103  Identities=22%  Similarity=0.262  Sum_probs=86.1

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhC
Q 010920           18 DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSC   97 (497)
Q Consensus        18 ~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~   97 (497)
                      +--+++++++|.++-|+-.+..|.++|..- .|+||||||+-.|. .+++                        ++|+..
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQ-l~il------------------------efli~i   56 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQ-LSIL------------------------EFLISI   56 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcch-HHHH------------------------HHHHHh
Confidence            346789999999999999999998887665 89999999998854 4444                        445555


Q ss_pred             CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHH
Q 010920           98 GANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLE  148 (497)
Q Consensus        98 ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh  148 (497)
                      |++++.+|++|.|||..|+-.||.++|++|++.|++-.  ....+|.+.+.
T Consensus        57 GA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt--~~~PdG~~~~e  105 (117)
T KOG4214|consen   57 GANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRT--IHAPDGTALIE  105 (117)
T ss_pred             ccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccc--eeCCCchhHHh
Confidence            66667789999999999999999999999999999987  78888888777

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.48  E-value=1.3e-12  Score=109.67  Aligned_cols=124  Identities=22%  Similarity=0.268  Sum_probs=100.6

Q ss_pred             ccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHH
Q 010920           45 WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV  124 (497)
Q Consensus        45 ~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v  124 (497)
                      .+|..|.||||+|+..|. .+++++|+++                        +.+.+..+..|.||||+|+..++.+++
T Consensus         2 ~~~~~g~t~l~~a~~~~~-~~~i~~li~~------------------------~~~~~~~~~~g~~~l~~a~~~~~~~~~   56 (126)
T cd00204           2 ARDEDGRTPLHLAASNGH-LEVVKLLLEN------------------------GADVNAKDNDGRTPLHLAAKNGHLEIV   56 (126)
T ss_pred             CcCcCCCCHHHHHHHcCc-HHHHHHHHHc------------------------CCCCCccCCCCCcHHHHHHHcCCHHHH
Confidence            456789999999999844 5555555554                        444456788999999999999999999


Q ss_pred             HHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCCCCC
Q 010920          125 RAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEP  204 (497)
Q Consensus       125 ~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~  204 (497)
                      ++|++.+++++  ..+..|.||+| .|+..++.+++++|+.++.+.                               ...
T Consensus        57 ~~ll~~~~~~~--~~~~~~~~~l~-~a~~~~~~~~~~~L~~~~~~~-------------------------------~~~  102 (126)
T cd00204          57 KLLLEKGADVN--ARDKDGNTPLH-LAARNGNLDVVKLLLKHGADV-------------------------------NAR  102 (126)
T ss_pred             HHHHHcCCCcc--ccCCCCCCHHH-HHHHcCcHHHHHHHHHcCCCC-------------------------------ccc
Confidence            99999998888  78899999999 999999999999999988333                               333


Q ss_pred             CCCCCChHHHHHHhCChhHHHHH
Q 010920          205 KFHQPDPSLTIYDQATKIRYKFA  227 (497)
Q Consensus       205 ~~~g~~pl~~a~~~~~~~~~~~l  227 (497)
                      +..+.+|++.+...+....++++
T Consensus       103 ~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204         103 DKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             CCCCCCHHHHHHhcCCHHHHHHh
Confidence            45677888888888777666654

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.46  E-value=4.2e-13  Score=122.02  Aligned_cols=124  Identities=20%  Similarity=0.216  Sum_probs=110.5

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHH
Q 010920           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLL   95 (497)
Q Consensus        16 ~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll   95 (497)
                      .-..||..++..|+.+-...||+.--.+|.+|..|.|+|+.|+..|+ .++|++||++|+|+|..               
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGn-l~~v~lll~~gaDvN~~---------------   74 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGN-LTLVELLLELGADVNDK---------------   74 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCc-HHHHHHHHHhCCCcCcc---------------
Confidence            45679999999999999999998755689999999999999999987 88888888888888752               


Q ss_pred             hCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhC
Q 010920           96 SCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC  166 (497)
Q Consensus        96 ~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~  166 (497)
                              ++..++||||+|+..|+.++.++|++.|+...  ..|.-|+|+-. .|+.-|+-++|.++-.+
T Consensus        75 --------qhg~~YTpLmFAALSGn~dvcrllldaGa~~~--~vNsvgrTAaq-mAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   75 --------QHGTLYTPLMFAALSGNQDVCRLLLDAGARMY--LVNSVGRTAAQ-MAAFVGHHECVAIINNH  134 (396)
T ss_pred             --------cccccccHHHHHHHcCCchHHHHHHhccCccc--cccchhhhHHH-HHHHhcchHHHHHHhcc
Confidence                    57789999999999999999999999999998  89999999999 89999999998865443

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.45  E-value=1.8e-13  Score=97.15  Aligned_cols=54  Identities=26%  Similarity=0.411  Sum_probs=46.1

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHH
Q 010920           17 KDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI   71 (497)
Q Consensus        17 G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll   71 (497)
                      |.||||+|++.|+.+++++|+++|+++|.+|.+|.||||+|+.+| +.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g-~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNG-NIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT--HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcc-CHHHHHHHC
Confidence            789999999999999999999999999999999999999999985 599999986

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.44  E-value=5.6e-13  Score=143.42  Aligned_cols=103  Identities=29%  Similarity=0.382  Sum_probs=89.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCC
Q 010920           19 ELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCG   98 (497)
Q Consensus        19 T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~g   98 (497)
                      +.|+.|+..|+.++|++|++.|+++|.+|..|.||||+|+..|+ .+++++|                        +++|
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~-~eiv~~L------------------------L~~G  138 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGH-VQVVRVL------------------------LEFG  138 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCC-HHHHHHH------------------------HHCC
Confidence            35899999999999999999999999999999999999999843 5555554                        4555


Q ss_pred             CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHC-------CCcccccccccCCCCHHH
Q 010920           99 ANALVRNDDCHTALGVARIKGHINVVRAIESH-------ICYFCGWLREFYGPSFLE  148 (497)
Q Consensus        99 a~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~-------g~~i~~~~~~~~G~T~Lh  148 (497)
                      ++++.+|..|.||||+|+..|+.+++++|+.+       |++.+  ..+..|.+|+.
T Consensus       139 advn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~--~~~~~g~~~~~  193 (664)
T PTZ00322        139 ADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAK--PDSFTGKPPSL  193 (664)
T ss_pred             CCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCC--ccccCCCCccc
Confidence            66677899999999999999999999999998       88887  67787887777

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=1.6e-14  Score=95.93  Aligned_cols=53  Identities=42%  Similarity=0.990  Sum_probs=49.8

Q ss_pred             cccccccccCCceEEeCCCCccchHHHHHHHhc-cCcccccccccccceeEeee
Q 010920          444 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKINQVIRLYT  496 (497)
Q Consensus       444 ~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i~~~~~~~~  496 (497)
                      .+|.||+|.+.+.+++-||||++|+.|..++++ ..+.||+||++|...|+.|+
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~   61 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYR   61 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhc
Confidence            599999999999999999999999999999998 67899999999999998885

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.39  E-value=7.8e-13  Score=99.83  Aligned_cols=83  Identities=17%  Similarity=0.055  Sum_probs=69.8

Q ss_pred             HHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCC
Q 010920           88 EPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCG  167 (497)
Q Consensus        88 ~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~g  167 (497)
                      .+-|+-.+..|.++|.. ..|++|||+|+-+|..+++++|+..|++++  .+|++|.|||. .|+..||.++|++|+++|
T Consensus        15 ~DeVk~~v~~g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~--~kDKygITPLL-sAvwEGH~~cVklLL~~G   90 (117)
T KOG4214|consen   15 IDEVKQSVNEGLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQ--DKDKYGITPLL-SAVWEGHRDCVKLLLQNG   90 (117)
T ss_pred             HHHHHHHHHccccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccC--CccccCCcHHH-HHHHHhhHHHHHHHHHcC
Confidence            44444444455555544 379999999999999999999999999999  89999999999 999999999999999999


Q ss_pred             CCCCCCC
Q 010920          168 TANPSKP  174 (497)
Q Consensus       168 a~~~~~~  174 (497)
                      ++.....
T Consensus        91 Adrt~~~   97 (117)
T KOG4214|consen   91 ADRTIHA   97 (117)
T ss_pred             cccceeC
Confidence            9865433

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.38  E-value=3.4e-12  Score=131.92  Aligned_cols=193  Identities=14%  Similarity=0.087  Sum_probs=145.8

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcC---------CCccccCCCCChHHHHHHHh--CCcHHHHHHHHHcCCCCCCcCcccCC
Q 010920           18 DELLYQWVIAGDVDAIRALRSQG---------ASLEWMDKEGKTPLIVACMD--SGLINVAKTLIELGANINAYRPAKRG   86 (497)
Q Consensus        18 ~T~Lh~Aa~~g~~~~v~~Ll~~g---------a~~n~~d~~G~TpLh~Aa~~--g~~~~~v~~Ll~~ga~~~~~~~~~~g   86 (497)
                      +.++..|...+..+.+..|+..+         .+++.+-..|+|.||.|..+  .+|.++++.|++.-.           
T Consensus       102 ~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p-----------  170 (782)
T KOG3676|consen  102 RDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFP-----------  170 (782)
T ss_pred             hhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhH-----------
Confidence            36888899999999998888765         46677777899999999994  345577777775421           


Q ss_pred             CHHHHHHHHhCCCCCcc-cCCCCCCHHHHHHHcCCHHHHHHHHHCCCccccc-------cc--------------ccCCC
Q 010920           87 LEPTVRLLLSCGANALV-RNDDCHTALGVARIKGHINVVRAIESHICYFCGW-------LR--------------EFYGP  144 (497)
Q Consensus        87 ~~~~v~~Ll~~ga~~~~-~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~-------~~--------------~~~G~  144 (497)
                            -|+.   ++.. -...|.||||+|+.+.+.++|++|++.||||+..       ..              -+.|.
T Consensus       171 ------~lin---d~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGE  241 (782)
T KOG3676|consen  171 ------KLIN---DIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGE  241 (782)
T ss_pred             ------HHhh---hhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeecc
Confidence                  1111   1111 2367899999999999999999999999988751       00              23578


Q ss_pred             CHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcC--cCHHHHHHHhhcC--CCCCCCCCCChHHHHHHhCC
Q 010920          145 SFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQD--VQPRAVIALWKAK--IDEPKFHQPDPSLTIYDQAT  220 (497)
Q Consensus       145 T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~--~~~~~~~~l~~~~--~~~~~~~g~~pl~~a~~~~~  220 (497)
                      .||- .||..++.+|+++|+++|||.+..+..+.+.+|.-+-.  ......+...++.  ...++..|-|||.+|+..+.
T Consensus       242 yPLS-fAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk  320 (782)
T KOG3676|consen  242 YPLS-FAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGK  320 (782)
T ss_pred             CchH-HHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhh
Confidence            8999 88888999999999999999999888888888875522  2233444556666  77899999999999999999


Q ss_pred             hhHHHHHHhCC
Q 010920          221 KIRYKFASANE  231 (497)
Q Consensus       221 ~~~~~~l~~~~  231 (497)
                      .+.++.+.+.+
T Consensus       321 ~emf~~ile~~  331 (782)
T KOG3676|consen  321 KEMFQHILERR  331 (782)
T ss_pred             HHHHHHHHHhh
Confidence            99988877653

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.37  E-value=5.4e-13  Score=95.20  Aligned_cols=55  Identities=27%  Similarity=0.220  Sum_probs=33.3

Q ss_pred             HHhCC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHh
Q 010920           94 LLSCG-ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALA  151 (497)
Q Consensus        94 Ll~~g-a~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A  151 (497)
                      ||++| ++++.+|..|+||||+|+.+|+.+++++|+..|++++  .+|..|+|||| +|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~--~~d~~G~Tpl~-~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPN--AKDKDGQTPLH-YA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT-----TTS--HHH-H-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCC--CCcCCCCCHHH-hC
Confidence            56777 8899999999999999999999999999999999999  99999999999 65

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.33  E-value=1.4e-12  Score=92.98  Aligned_cols=55  Identities=36%  Similarity=0.428  Sum_probs=27.4

Q ss_pred             HHHcC-CCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHH
Q 010920           36 LRSQG-ASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGV  114 (497)
Q Consensus        36 Ll~~g-a~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~  114 (497)
                      ||++| +++|.+|..|+||||+||..|+ .++++                        +|++.|++++.+|..|+||||+
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~-~~~v~------------------------~Ll~~g~d~~~~d~~G~Tpl~~   55 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGH-SEVVR------------------------LLLQNGADPNAKDKDGQTPLHY   55 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT--HHHHH------------------------HHHHCT--TT---TTS--HHHH
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCc-HHHHH------------------------HHHHCcCCCCCCcCCCCCHHHh
Confidence            67888 8999999999999999999844 55554                        5555666777899999999999


Q ss_pred             H
Q 010920          115 A  115 (497)
Q Consensus       115 A  115 (497)
                      |
T Consensus        56 A   56 (56)
T PF13857_consen   56 A   56 (56)
T ss_dssp             -
T ss_pred             C
Confidence            7

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.32  E-value=4.6e-12  Score=115.34  Aligned_cols=101  Identities=26%  Similarity=0.315  Sum_probs=83.3

Q ss_pred             chhhhc-hhhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcC
Q 010920            4 SLNSMN-QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWM-DKEGKTPLIVACMDSGLINVAKTLIELGANINAYR   81 (497)
Q Consensus         4 ~l~~~~-~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~-d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~   81 (497)
                      +|.... .+++|.+|.|+|..|+..|+.++|++||+.|+|+|.. +..++||||+|+..|+ .++.+             
T Consensus        31 LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn-~dvcr-------------   96 (396)
T KOG1710|consen   31 LLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGN-QDVCR-------------   96 (396)
T ss_pred             HHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCC-chHHH-------------
Confidence            344433 6678999999999999999999999999999999876 4568999999999977 45554             


Q ss_pred             cccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH
Q 010920           82 PAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES  129 (497)
Q Consensus        82 ~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~  129 (497)
                                 +|++.|+.++..|.-|+|+-.+|+.-||.++|..+-.
T Consensus        97 -----------llldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   97 -----------LLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             -----------HHHhccCccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence                       4555556666788899999999999999999987653

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.29  E-value=1.6e-11  Score=132.25  Aligned_cols=77  Identities=29%  Similarity=0.271  Sum_probs=70.3

Q ss_pred             CHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhC
Q 010920           87 LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC  166 (497)
Q Consensus        87 ~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~  166 (497)
                      +.+++++|+++|+++|.+|..|.||||+|+.+|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+.+
T Consensus        94 ~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn--~~d~~G~TpLh-~A~~~g~~~iv~~Ll~~  170 (664)
T PTZ00322         94 DAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPT--LLDKDGKTPLE-LAEENGFREVVQLLSRH  170 (664)
T ss_pred             CHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHCCcHHHHHHHHhC
Confidence            3566666666777777889999999999999999999999999999999  89999999999 99999999999999998

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.28  E-value=8.1e-12  Score=88.56  Aligned_cols=54  Identities=19%  Similarity=0.151  Sum_probs=46.3

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 010920          108 CHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI  164 (497)
Q Consensus       108 g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll  164 (497)
                      |.||||+|+..|+.+++++|+++|.+++  .+|.+|.|||| +|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din--~~d~~g~t~lh-~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADIN--AQDEDGRTPLH-YAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT---B-TTS--HHH-HHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHccCHHHHHHHC
Confidence            7899999999999999999999999999  78999999999 999999999999986

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.27  E-value=1.8e-11  Score=119.87  Aligned_cols=122  Identities=16%  Similarity=0.096  Sum_probs=99.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCC
Q 010920           19 ELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCG   98 (497)
Q Consensus        19 T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~g   98 (497)
                      -.|.-|+..|.+++|+..+..--|+...+..|.||||-|+.. +|.+||++                        |++.|
T Consensus       552 aLLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCa-ghyeIVkF------------------------Li~~g  606 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICA-GHYEIVKF------------------------LIEFG  606 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhc-chhHHHHH------------------------HHhcC
Confidence            456778999999999999988788888999999999999996 44555555                        55556


Q ss_pred             CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHh--hhcCCHHHHHHhhhCC
Q 010920           99 ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALA--PQLMSRKIWVVVIPCG  167 (497)
Q Consensus        99 a~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A--~~~~~~~iv~~Ll~~g  167 (497)
                      +++|..|.+|+||||.|++.+++.+++.|++.|+-|.. ..-.++.|+.. -+  -..|+..|.+||..-.
T Consensus       607 anVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfA-sTlSDmeTa~e-KCee~eeGY~~CsqyL~~vq  675 (752)
T KOG0515|consen  607 ANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFA-STLSDMETAAE-KCEEMEEGYDQCSQYLYGVQ  675 (752)
T ss_pred             CcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEe-eecccccchhh-hcchhhhhHHHHHHHHHHHH
Confidence            67777899999999999999999999999999988752 45667889988 55  3568889999997543

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=99.26  E-value=4e-12  Score=88.20  Aligned_cols=48  Identities=35%  Similarity=0.953  Sum_probs=42.1

Q ss_pred             CcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920          443 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  490 (497)
Q Consensus       443 ~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  490 (497)
                      +..|.||++...+++++||||.++|..|+.+|.....+||+||++|.+
T Consensus         2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~   49 (50)
T PF13920_consen    2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES   49 (50)
T ss_dssp             HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred             cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence            458999999999999999999955999999998888899999999975

...

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.17  E-value=6.8e-10  Score=103.32  Aligned_cols=128  Identities=21%  Similarity=0.206  Sum_probs=100.2

Q ss_pred             cccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCC---
Q 010920           44 EWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH---  120 (497)
Q Consensus        44 n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~---  120 (497)
                      ...+..+.+++|+++..+.                         ..++.+|+..|++++.++..|.||||+|+..++   
T Consensus        67 ~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  121 (235)
T COG0666          67 AARDLDGRLPLHSAASKGD-------------------------DKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPE  121 (235)
T ss_pred             ccCCccccCHHHHHHHcCc-------------------------HHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCccc
Confidence            3345557777887777644                         455566667777778899999999999999999   


Q ss_pred             --HHHHHHHHHCCC---cccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHH
Q 010920          121 --INVVRAIESHIC---YFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIA  195 (497)
Q Consensus       121 --~~~v~~Ll~~g~---~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~  195 (497)
                        .+++++|++.|+   ..+  .+|..|.|||| +|+..|+.+++++|++.|++...+                      
T Consensus       122 ~~~~~~~~ll~~g~~~~~~~--~~~~~g~tpl~-~A~~~~~~~~~~~ll~~~~~~~~~----------------------  176 (235)
T COG0666         122 GNIEVAKLLLEAGADLDVNN--LRDEDGNTPLH-WAALNGDADIVELLLEAGADPNSR----------------------  176 (235)
T ss_pred             chHHHHHHHHHcCCCCCCcc--ccCCCCCchhH-HHHHcCchHHHHHHHhcCCCCccc----------------------
Confidence              999999999999   444  67999999999 999999999999999998776554                      


Q ss_pred             HhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhC
Q 010920          196 LWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN  230 (497)
Q Consensus       196 l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~  230 (497)
                               +..|.++++.+...+.......+...
T Consensus       177 ---------~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         177 ---------NSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             ---------ccCCCcchhhhcccchHHHHHHHHhc
Confidence                     34566666666666666666666554

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=1e-11  Score=112.79  Aligned_cols=53  Identities=36%  Similarity=0.952  Sum_probs=49.9

Q ss_pred             CCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccceeEeeeC
Q 010920          441 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV  497 (497)
Q Consensus       441 ~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~~  497 (497)
                      +....|.||||.+.+++|++|||+++|..|..+|.    .||+||+.|...++||++
T Consensus       298 ~~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~----eCPICRqyi~rvvrif~~  350 (350)
T KOG4275|consen  298 ATRRLCAICMDAPRDCVFLECGHMVTCTKCGKRMN----ECPICRQYIVRVVRIFRV  350 (350)
T ss_pred             hHHHHHHHHhcCCcceEEeecCcEEeehhhccccc----cCchHHHHHHHHHhhhcC
Confidence            34789999999999999999999999999999998    899999999999999975

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=5.6e-11  Score=112.42  Aligned_cols=58  Identities=28%  Similarity=0.854  Sum_probs=52.4

Q ss_pred             CCCCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccceeEeee
Q 010920          439 DDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT  496 (497)
Q Consensus       439 ~~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~  496 (497)
                      +.++..+|+||+...++.+++||+|+++|..|++.+.-+...||+||++|...+.||.
T Consensus       286 ~~~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~  343 (349)
T KOG4265|consen  286 ESESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV  343 (349)
T ss_pred             cccCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence            3455679999999999999999999999999999998777789999999999998873

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.04  E-value=3.8e-10  Score=110.70  Aligned_cols=87  Identities=20%  Similarity=0.096  Sum_probs=79.0

Q ss_pred             ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010920           83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV  162 (497)
Q Consensus        83 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~  162 (497)
                      +..|..++|+-.+..--|+...|..|.|+||-|+-.||.+||++|+..|+++|  ..|.+|||||| +|+..++.-+++.
T Consensus       558 aLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVN--a~DSdGWTPLH-CAASCNnv~~ckq  634 (752)
T KOG0515|consen  558 ALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVN--AADSDGWTPLH-CAASCNNVPMCKQ  634 (752)
T ss_pred             hhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCccc--CccCCCCchhh-hhhhcCchHHHHH
Confidence            55677888888887777888899999999999999999999999999999999  89999999999 8999999999999


Q ss_pred             hhhCCCCCCC
Q 010920          163 VIPCGTANPS  172 (497)
Q Consensus       163 Ll~~ga~~~~  172 (497)
                      |+++|+.+-.
T Consensus       635 LVe~GaavfA  644 (752)
T KOG0515|consen  635 LVESGAAVFA  644 (752)
T ss_pred             HHhccceEEe
Confidence            9999987633

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.92  E-value=1.3e-09  Score=95.55  Aligned_cols=55  Identities=25%  Similarity=0.795  Sum_probs=46.3

Q ss_pred             CCCCcccccccccCCceEEeCCCCccchHHHHHHHhcc----------------Ccccccccccccc--eeEee
Q 010920          440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK----------------KGDCPVCRTKINQ--VIRLY  495 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~----------------~~~Cp~Cr~~i~~--~~~~~  495 (497)
                      ..+...|+||++...+++.++|||.| |+.|+.+|...                ..+||+||.+|..  .+++|
T Consensus        15 ~~~~~~CpICld~~~dPVvT~CGH~F-C~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy   87 (193)
T PLN03208         15 SGGDFDCNICLDQVRDPVVTLCGHLF-CWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY   87 (193)
T ss_pred             CCCccCCccCCCcCCCcEEcCCCchh-HHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence            44567999999999999999999999 99999998631                3579999999944  66766

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=7.7e-10  Score=98.56  Aligned_cols=55  Identities=33%  Similarity=0.844  Sum_probs=48.6

Q ss_pred             CCCCcccccccccCCceEEeCCCCccchHHHHHHHhcc---Ccccccccccc--cceeEee
Q 010920          440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK---KGDCPVCRTKI--NQVIRLY  495 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~---~~~Cp~Cr~~i--~~~~~~~  495 (497)
                      ......|.||+|..+++|++.|||.| |+.|+.+|...   +..||+|+..|  +..++||
T Consensus        44 ~~~~FdCNICLd~akdPVvTlCGHLF-CWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY  103 (230)
T KOG0823|consen   44 DGGFFDCNICLDLAKDPVVTLCGHLF-CWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY  103 (230)
T ss_pred             CCCceeeeeeccccCCCEEeecccce-ehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence            55678999999999999999999999 99999999973   46789999888  5678887

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=4.3e-09  Score=89.51  Aligned_cols=54  Identities=33%  Similarity=0.836  Sum_probs=46.0

Q ss_pred             CCCcccccccccCCce--EEeCCCCccchHHHHHHHhccCcccccccccc--cceeEee
Q 010920          441 GSSSSCVICWEAPVEG--ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI--NQVIRLY  495 (497)
Q Consensus       441 ~~~~~C~iC~~~~~~~--~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i--~~~~~~~  495 (497)
                      +....|+|||+.+..-  +.+.|||+| |..|++.......+||+||+.|  ..+++||
T Consensus       129 ~~~~~CPiCl~~~sek~~vsTkCGHvF-C~~Cik~alk~~~~CP~C~kkIt~k~~~rI~  186 (187)
T KOG0320|consen  129 EGTYKCPICLDSVSEKVPVSTKCGHVF-CSQCIKDALKNTNKCPTCRKKITHKQFHRIY  186 (187)
T ss_pred             ccccCCCceecchhhccccccccchhH-HHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence            3447999999987653  458999999 9999999998888999999888  5688888

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=2.7e-09  Score=97.90  Aligned_cols=50  Identities=34%  Similarity=0.888  Sum_probs=45.1

Q ss_pred             CCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccce
Q 010920          441 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQV  491 (497)
Q Consensus       441 ~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~  491 (497)
                      +....|.+|++...++..+||||.| |+.|+..|...+..||+||.++...
T Consensus       237 ~a~~kC~LCLe~~~~pSaTpCGHiF-CWsCI~~w~~ek~eCPlCR~~~~ps  286 (293)
T KOG0317|consen  237 EATRKCSLCLENRSNPSATPCGHIF-CWSCILEWCSEKAECPLCREKFQPS  286 (293)
T ss_pred             CCCCceEEEecCCCCCCcCcCcchH-HHHHHHHHHccccCCCcccccCCCc
Confidence            3446999999999999999999999 9999999999888899999988543

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.76  E-value=6.1e-09  Score=95.66  Aligned_cols=54  Identities=35%  Similarity=0.770  Sum_probs=45.3

Q ss_pred             CCcccccccccCCc--------eEEeCCCCccchHHHHHHHhccCcccccccccccceeEeee
Q 010920          442 SSSSCVICWEAPVE--------GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT  496 (497)
Q Consensus       442 ~~~~C~iC~~~~~~--------~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~  496 (497)
                      ....|+||++...+        .++.+|+|.| |..|+..|...+..||+||.++...++..+
T Consensus       173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~F-C~~CI~~Wl~~~~tCPlCR~~~~~v~~~r~  234 (238)
T PHA02929        173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVF-CIECIDIWKKEKNTCPVCRTPFISVIKSRF  234 (238)
T ss_pred             CCCCCccCCcccccCccccccceecCCCCCcc-cHHHHHHHHhcCCCCCCCCCEeeEEeeeee
Confidence            45699999997543        3567999999 999999999988899999999988776543

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.75  E-value=5.5e-09  Score=68.18  Aligned_cols=38  Identities=37%  Similarity=0.983  Sum_probs=33.6

Q ss_pred             cccccccCCce-EEeCCCCccchHHHHHHHhccCcccccc
Q 010920          446 CVICWEAPVEG-ACVPCGHMAGCMSCLSEIKAKKGDCPVC  484 (497)
Q Consensus       446 C~iC~~~~~~~-~~~pC~H~~~C~~C~~~~~~~~~~Cp~C  484 (497)
                      |+||++...++ ++++|||.| |..|+.++.....+||+|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~f-C~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSF-CKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEE-EHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCch-hHHHHHHHHHCcCCCcCC
Confidence            89999999998 689999999 999999999888899988

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.73  E-value=1.1e-08  Score=99.41  Aligned_cols=96  Identities=26%  Similarity=0.306  Sum_probs=75.4

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHH
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTV   91 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v   91 (497)
                      .++.++...+++|++.|++..++.+.-.|.|++.+|.+.+|+||+||.. +|++++++||+.                  
T Consensus       501 ~~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaE-G~v~v~kfl~~~------------------  561 (622)
T KOG0506|consen  501 PRENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAE-GHVEVVKFLLNA------------------  561 (622)
T ss_pred             cccccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeeccc-CceeHHHHHHHH------------------
Confidence            3456677788888888888888888888888888888888888888887 447777777654                  


Q ss_pred             HHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Q 010920           92 RLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI  131 (497)
Q Consensus        92 ~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g  131 (497)
                           .+.+++.+|..|+|||.-|...+|.+++++|-+.-
T Consensus       562 -----~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  562 -----CKVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             -----HcCCCChhhccCCCcchHhHhcCcHHHHHHHHHHh
Confidence                 23556667888888888888888888888887653

>PF13606 Ank_3: Ankyrin repeat

Probab=98.73  E-value=1.5e-08  Score=61.70  Aligned_cols=28  Identities=18%  Similarity=0.312  Sum_probs=15.2

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCcc
Q 010920           17 KDELLYQWVIAGDVDAIRALRSQGASLE   44 (497)
Q Consensus        17 G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n   44 (497)
                      |+||||+||+.|+.++|++||++|+|+|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            4555555555555555555555555544

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.72  E-value=6.2e-09  Score=70.04  Aligned_cols=40  Identities=40%  Similarity=0.888  Sum_probs=35.4

Q ss_pred             ccccccccC---CceEEeCCCCccchHHHHHHHhccCccccccc
Q 010920          445 SCVICWEAP---VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCR  485 (497)
Q Consensus       445 ~C~iC~~~~---~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr  485 (497)
                      .|+||++.+   ..++.++|+|.| |..|+..|...+.+||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVF-HRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEE-EHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCee-CHHHHHHHHHhCCcCCccC
Confidence            799999976   457788999999 9999999999889999997

...

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.72  E-value=2e-08  Score=62.93  Aligned_cols=32  Identities=22%  Similarity=0.238  Sum_probs=21.7

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCccccC
Q 010920           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMD   47 (497)
Q Consensus        16 ~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d   47 (497)
                      +|.||||+|+..|+.+++++||++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            36667777777777777777777776666655

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=4.3e-09  Score=99.81  Aligned_cols=56  Identities=34%  Similarity=0.872  Sum_probs=50.3

Q ss_pred             ccCCCCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccceeEeee
Q 010920          437 VKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT  496 (497)
Q Consensus       437 ~~~~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~  496 (497)
                      ..+......|+||.+.+.+.+++||||+++|..|.+.+.    +||+||+.|...+++|.
T Consensus       299 ~~~~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~----~CPvCR~rI~~~~k~y~  354 (355)
T KOG1571|consen  299 FRELPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLP----QCPVCRQRIRLVRKRYR  354 (355)
T ss_pred             ccccCCCCceEEecCCccceeeecCCcEEEchHHHhhCC----CCchhHHHHHHHHHHhc
Confidence            444566679999999999999999999999999999998    89999999999888885

>PF13606 Ank_3: Ankyrin repeat

Probab=98.69  E-value=2.6e-08  Score=60.67  Aligned_cols=30  Identities=43%  Similarity=0.721  Sum_probs=27.0

Q ss_pred             CCChHHHHHHHhCCcHHHHHHHHHcCCCCCC
Q 010920           49 EGKTPLIVACMDSGLINVAKTLIELGANINA   79 (497)
Q Consensus        49 ~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~   79 (497)
                      +|+||||+||..|+ .+++++||++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~-~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGN-IEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCC-HHHHHHHHHcCCCCCC
Confidence            58999999999955 9999999999999874

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.67  E-value=8.7e-08  Score=93.74  Aligned_cols=86  Identities=26%  Similarity=0.306  Sum_probs=70.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccCC-CCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCC
Q 010920           20 LLYQWVIAGDVDAIRALRSQGASLEWMDK-EGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCG   98 (497)
Q Consensus        20 ~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~-~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~g   98 (497)
                      -||-.++.|+.+..-.||..||++|..+. .|.||||+|+..|+                         ..-+++|+-+|
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq-------------------------~~Q~ElL~vYG  190 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQ-------------------------ILQAELLAVYG  190 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccc-------------------------hhhhhHHhhcc
Confidence            58999999999999999999999988875 58999999999865                         34456666677


Q ss_pred             CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHC
Q 010920           99 ANALVRNDDCHTALGVARIKGHINVVRAIESH  130 (497)
Q Consensus        99 a~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~  130 (497)
                      ||++..|..|+||+.+|-..||-++.+-|++.
T Consensus       191 AD~~a~d~~GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  191 ADPGAQDSSGMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             CCCCCCCCCCCcHHHHHHhcCchHHHHHHHHH
Confidence            77778899999999999999998887777653

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.66  E-value=1.3e-08  Score=105.05  Aligned_cols=90  Identities=22%  Similarity=0.278  Sum_probs=72.2

Q ss_pred             HHHHHHHc-C-CCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccC-CCC
Q 010920           32 AIRALRSQ-G-ASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRN-DDC  108 (497)
Q Consensus        32 ~v~~Ll~~-g-a~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~-~~g  108 (497)
                      -++-++++ + --.|.+|..|+|+||+|+..+.                         .+++++||++|++++.+| ..|
T Consensus        32 qlk~F~~k~c~n~anikD~~GR~alH~~~S~~k-------------------------~~~l~wLlqhGidv~vqD~ESG   86 (1267)
T KOG0783|consen   32 QLKGFSEKSCQNLANIKDRYGRTALHIAVSENK-------------------------NSFLRWLLQHGIDVFVQDEESG   86 (1267)
T ss_pred             HHHHHHHHhhhhhhhHHHhhccceeeeeeccch-------------------------hHHHHHHHhcCceeeecccccc
Confidence            34545443 2 2368899999999999998733                         455555556666666666 469


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHH
Q 010920          109 HTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLE  148 (497)
Q Consensus       109 ~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh  148 (497)
                      +||||-|+.+|+++++-+||++|+.+.  ++|+.|..||.
T Consensus        87 ~taLHRaiyyG~idca~lLL~~g~SL~--i~Dkeglsplq  124 (1267)
T KOG0783|consen   87 YTALHRAIYYGNIDCASLLLSKGRSLR--IKDKEGLSPLQ  124 (1267)
T ss_pred             chHhhHhhhhchHHHHHHHHhcCCceE--EecccCCCHHH
Confidence            999999999999999999999999998  99999999999

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.65  E-value=2e-08  Score=66.28  Aligned_cols=38  Identities=37%  Similarity=0.905  Sum_probs=30.5

Q ss_pred             cccccccCCceEEeCCCCccchHHHHHHHhccC----cccccc
Q 010920          446 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK----GDCPVC  484 (497)
Q Consensus       446 C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~----~~Cp~C  484 (497)
                      |+||++.+.+++.++|||.| |..|+.++....    ..||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~F-C~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSF-CRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEE-EHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHH-HHHHHHHHHHccCCcCCCCcCC
Confidence            89999999999999999999 999999999743    469987

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.58  E-value=7.8e-08  Score=60.24  Aligned_cols=32  Identities=38%  Similarity=0.533  Sum_probs=28.7

Q ss_pred             CCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcC
Q 010920           49 EGKTPLIVACMDSGLINVAKTLIELGANINAYR   81 (497)
Q Consensus        49 ~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~   81 (497)
                      +|.||||+|+..| +.+++++|+++|++++.++
T Consensus         1 dG~TpLh~A~~~~-~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRG-HPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTT-CHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHH-HHHHHHHHHHCcCCCCCCC
Confidence            5899999999995 5999999999999998875

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.51  E-value=4.6e-07  Score=88.80  Aligned_cols=81  Identities=21%  Similarity=0.094  Sum_probs=68.3

Q ss_pred             ccCCCHHHHHHHHhCCCCCcccC-CCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 010920           83 AKRGLEPTVRLLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV  161 (497)
Q Consensus        83 ~~~g~~~~v~~Ll~~ga~~~~~~-~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~  161 (497)
                      ++.|+.++.--||..||++|..+ ..|.||||+|+..|+..-+++|+-+|+|+.  ..|.+|.||+. +|-..||-++.+
T Consensus       141 vRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~--a~d~~GmtP~~-~AR~~gH~~lae  217 (669)
T KOG0818|consen  141 VRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPG--AQDSSGMTPVD-YARQGGHHELAE  217 (669)
T ss_pred             hhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCC--CCCCCCCcHHH-HHHhcCchHHHH
Confidence            45556666666666777777665 579999999999999999999999999999  89999999999 999999988887


Q ss_pred             HhhhC
Q 010920          162 VVIPC  166 (497)
Q Consensus       162 ~Ll~~  166 (497)
                      .|++.
T Consensus       218 Rl~e~  222 (669)
T KOG0818|consen  218 RLVEI  222 (669)
T ss_pred             HHHHH
Confidence            77653

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.47  E-value=4.2e-07  Score=90.68  Aligned_cols=91  Identities=24%  Similarity=0.295  Sum_probs=74.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCC--cc--ccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHH
Q 010920           20 LLYQWVIAGDVDAIRALRSQGAS--LE--WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLL   95 (497)
Q Consensus        20 ~Lh~Aa~~g~~~~v~~Ll~~ga~--~n--~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll   95 (497)
                      -|..|+...++..+-+||.+|..  +|  ..+.+|.|+||+||..|+ +.+.++|+.+|+|+                  
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gn-Vvl~QLLiWyg~dv------------------  687 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGN-VVLAQLLIWYGVDV------------------  687 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcc-hhHHHHHHHhCccc------------------
Confidence            46778888889999999999853  33  345678999999999866 88888888777655                  


Q ss_pred             hCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCccc
Q 010920           96 SCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC  135 (497)
Q Consensus        96 ~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~  135 (497)
                            -.+|..|+|+|.||-+.|.-+|+.+|+.+|+.-+
T Consensus       688 ------~~rda~g~t~l~yar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  688 ------MARDAHGRTALFYARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             ------eecccCCchhhhhHhhcccHHHHHHHHHcCCCcc
Confidence                  3578999999999999999999999999997544

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.44  E-value=7.4e-07  Score=88.60  Aligned_cols=121  Identities=15%  Similarity=0.087  Sum_probs=103.3

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCC
Q 010920           21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGAN  100 (497)
Q Consensus        21 Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~  100 (497)
                      |..|+..+++--+..+-..|.++-.++.+..|.||||+..|+ -++|+|+|+||.            .++          
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~-~eivkyildh~p------------~el----------  926 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGN-GEIVKYILDHGP------------SEL----------  926 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCC-hHHHHHHHhcCC------------HHH----------
Confidence            566777777777777777888888999999999999999977 888888888864            222          


Q ss_pred             CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCC
Q 010920          101 ALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCG  167 (497)
Q Consensus       101 ~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~g  167 (497)
                      ++..|..|.|+||-|+-.++..+.++|++.|+.+.  ..|..|.||-. -|-+.+..+++.+|-.+.
T Consensus       927 ld~~de~get~lhkaa~~~~r~vc~~lvdagasl~--ktd~kg~tp~e-raqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  927 LDMADETGETALHKAACQRNRAVCQLLVDAGASLR--KTDSKGKTPQE-RAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             HHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhhe--ecccCCCChHH-HHHhcCCchHHHHHhhhh
Confidence            23467889999999999999999999999999998  89999999999 899999999999887654

>PHA02926 zinc finger-like protein; Provisional

Probab=98.43  E-value=8.5e-08  Score=84.87  Aligned_cols=53  Identities=26%  Similarity=0.755  Sum_probs=41.7

Q ss_pred             CCCCcccccccccCC---------ceEEeCCCCccchHHHHHHHhccC------cccccccccccceeE
Q 010920          440 DGSSSSCVICWEAPV---------EGACVPCGHMAGCMSCLSEIKAKK------GDCPVCRTKINQVIR  493 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~---------~~~~~pC~H~~~C~~C~~~~~~~~------~~Cp~Cr~~i~~~~~  493 (497)
                      ..++.+|.||+|..-         -.++.+|+|.| |..|+..|...+      ..||+||..+...++
T Consensus       167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsF-Cl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p  234 (242)
T PHA02926        167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIF-CITCINIWHRTRRETGASDNCPICRTRFRNITM  234 (242)
T ss_pred             ccCCCCCccCccccccccccccccccccCCCCchH-HHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence            455679999998642         25778999999 999999999742      459999998875543

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.39  E-value=2e-07  Score=61.59  Aligned_cols=38  Identities=37%  Similarity=0.909  Sum_probs=34.9

Q ss_pred             cccccccCCceE-EeCCCCccchHHHHHHHhc--cCcccccc
Q 010920          446 CVICWEAPVEGA-CVPCGHMAGCMSCLSEIKA--KKGDCPVC  484 (497)
Q Consensus       446 C~iC~~~~~~~~-~~pC~H~~~C~~C~~~~~~--~~~~Cp~C  484 (497)
                      |+||++...+.+ +++|||.| |..|+.++..  ...+||+|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~f-C~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSF-CRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEE-EHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcc-hHHHHHHHHHhcCCccCCcC
Confidence            899999999988 88999999 9999999998  55789988

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>smart00504 Ubox Modified RING finger domain

Probab=98.39  E-value=1.8e-07  Score=68.41  Aligned_cols=44  Identities=18%  Similarity=0.251  Sum_probs=41.3

Q ss_pred             cccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccc
Q 010920          444 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI  488 (497)
Q Consensus       444 ~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i  488 (497)
                      ..|+||.+...+++.+||||.| |..|+.++......||+|+.++
T Consensus         2 ~~Cpi~~~~~~~Pv~~~~G~v~-~~~~i~~~~~~~~~cP~~~~~~   45 (63)
T smart00504        2 FLCPISLEVMKDPVILPSGQTY-ERRAIEKWLLSHGTDPVTGQPL   45 (63)
T ss_pred             cCCcCCCCcCCCCEECCCCCEE-eHHHHHHHHHHCCCCCCCcCCC
Confidence            4799999999999999999999 9999999998778899999988

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.39  E-value=2.5e-07  Score=95.78  Aligned_cols=67  Identities=21%  Similarity=0.174  Sum_probs=56.8

Q ss_pred             hhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCC-CCChHHHHHHHhCCcHHHHHHHHHcCCCCC
Q 010920           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDK-EGKTPLIVACMDSGLINVAKTLIELGANIN   78 (497)
Q Consensus        11 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~-~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~   78 (497)
                      ++.|.-|+|+||.|+..|...++++||.+|++++.+|. .|+||||-|+..|+ +||+-+||.+|+.+.
T Consensus        46 nikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~-idca~lLL~~g~SL~  113 (1267)
T KOG0783|consen   46 NIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGN-IDCASLLLSKGRSLR  113 (1267)
T ss_pred             hHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhch-HHHHHHHHhcCCceE
Confidence            34567899999999999999999999999999999996 59999999999955 777777666665443

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.38  E-value=2.6e-07  Score=61.99  Aligned_cols=41  Identities=39%  Similarity=0.972  Sum_probs=35.2

Q ss_pred             ccccccccC---CceEEeCCCCccchHHHHHHHhccCcccccccc
Q 010920          445 SCVICWEAP---VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRT  486 (497)
Q Consensus       445 ~C~iC~~~~---~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~  486 (497)
                      .|.||++..   ....+++|||.| |..|+..+......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~-C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIF-CEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHH-HHHHHHhhcCCCCCCcCCCC
Confidence            489999887   357888999999 99999999955678999985

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.37  E-value=3.8e-07  Score=88.98  Aligned_cols=94  Identities=17%  Similarity=0.199  Sum_probs=78.4

Q ss_pred             CCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHH
Q 010920           47 DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRA  126 (497)
Q Consensus        47 d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~  126 (497)
                      +.++.-.+++|+..|+                         ...++-+.-.|.|++.+|.+.+|+||.|+..|+++++++
T Consensus       503 ~~~~~i~~~~aa~~GD-------------------------~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kf  557 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGD-------------------------LSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKF  557 (622)
T ss_pred             cccchhhhhhhhhcCC-------------------------HHHHHHHHHhcccccccccccchhheeecccCceeHHHH
Confidence            3456678899998866                         444555555667888899999999999999999999999


Q ss_pred             HHHC-CCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCC
Q 010920          127 IESH-ICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGT  168 (497)
Q Consensus       127 Ll~~-g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga  168 (497)
                      |++. +.+.+  .+|..|+|||. -|...+|.+++++|-+...
T Consensus       558 l~~~~kv~~~--~kDRw~rtPlD-dA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  558 LLNACKVDPD--PKDRWGRTPLD-DAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             HHHHHcCCCC--hhhccCCCcch-HhHhcCcHHHHHHHHHHhc
Confidence            9975 56777  89999999999 9999999999999987654

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.32  E-value=1.2e-06  Score=87.62  Aligned_cols=81  Identities=25%  Similarity=0.175  Sum_probs=70.0

Q ss_pred             CHHHHHHHHhCCCC--Ccc--cCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010920           87 LEPTVRLLLSCGAN--ALV--RNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV  162 (497)
Q Consensus        87 ~~~~v~~Ll~~ga~--~~~--~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~  162 (497)
                      ....+-+||.+|..  +|.  .+.+|+|+||+|++.|++.+.++|+-+|+|+.  ..|.+|+|+|. ||-+.|..+++.+
T Consensus       636 Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~--~rda~g~t~l~-yar~a~sqec~d~  712 (749)
T KOG0705|consen  636 DLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVM--ARDAHGRTALF-YARQAGSQECIDV  712 (749)
T ss_pred             HHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccce--ecccCCchhhh-hHhhcccHHHHHH
Confidence            44556677777754  332  46788999999999999999999999999998  89999999999 9999999999999


Q ss_pred             hhhCCCCC
Q 010920          163 VIPCGTAN  170 (497)
Q Consensus       163 Ll~~ga~~  170 (497)
                      |+.+|.-.
T Consensus       713 llq~gcp~  720 (749)
T KOG0705|consen  713 LLQYGCPD  720 (749)
T ss_pred             HHHcCCCc
Confidence            99999754

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.32  E-value=1.3e-06  Score=86.74  Aligned_cols=87  Identities=24%  Similarity=0.345  Sum_probs=64.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHH--cCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHh
Q 010920           19 ELLYQWVIAGDVDAIRALRS--QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLS   96 (497)
Q Consensus        19 T~Lh~Aa~~g~~~~v~~Ll~--~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~   96 (497)
                      -|||+++.....+-+..++.  .+..++.+|..|.||||+|+..|+ .+.++                        +|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~-~~~a~------------------------~Ll~   76 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGH-VEAAR------------------------ILLS   76 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcC-HHHHH------------------------HHHh
Confidence            35889888877766665443  335678889999999999999844 44444                        4445


Q ss_pred             CCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHC
Q 010920           97 CGANALVRNDDCHTALGVARIKGHINVVRAIESH  130 (497)
Q Consensus        97 ~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~  130 (497)
                      .|+++..+|..|++|||-|+..|+.+++..++.+
T Consensus        77 a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   77 AGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             cCCCccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence            5556666889999999999999998887776654

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.32  E-value=4e-07  Score=61.34  Aligned_cols=43  Identities=44%  Similarity=0.990  Sum_probs=35.6

Q ss_pred             ccccccccCCceEEe-CCCCccchHHHHHHHhcc-Ccccccccccc
Q 010920          445 SCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAK-KGDCPVCRTKI  488 (497)
Q Consensus       445 ~C~iC~~~~~~~~~~-pC~H~~~C~~C~~~~~~~-~~~Cp~Cr~~i  488 (497)
                      .|+||++...+.+.+ +|+|.| |..|...|... ...||+||..+
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~-c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVF-CRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhCceEecCCCChh-cHHHHHHHHHhCcCCCCCCCCcC
Confidence            489999998555544 599999 99999999876 67899999754

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.30  E-value=1.4e-06  Score=86.56  Aligned_cols=65  Identities=22%  Similarity=0.094  Sum_probs=59.1

Q ss_pred             CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhC
Q 010920           99 ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC  166 (497)
Q Consensus        99 a~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~  166 (497)
                      ..++..|..|.||||+|+..|+.+.++.|+..|+++.  .+|..|++||| -|+..|+.+++..++.+
T Consensus        46 ~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~--~kN~~gWs~L~-EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   46 LVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVS--IKNNEGWSPLH-EAVSTGNEQIITEVLRH  110 (560)
T ss_pred             ceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcc--ccccccccHHH-HHHHcCCHHHHHHHHHH
Confidence            4577889999999999999999999999999999998  89999999999 89999998887776654

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.30  E-value=1.3e-06  Score=86.83  Aligned_cols=94  Identities=22%  Similarity=0.268  Sum_probs=78.5

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHHcCCC--ccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHH
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGAS--LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEP   89 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~--~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~   89 (497)
                      +|+.+-.|.||+|++.|+-++|+|||.+|..  ++..|..|.|+||-|+..++ -.+.++|++.|               
T Consensus       894 ~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~-r~vc~~lvdag---------------  957 (1004)
T KOG0782|consen  894 IQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRN-RAVCQLLVDAG---------------  957 (1004)
T ss_pred             eeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcc-hHHHHHHHhcc---------------
Confidence            3566888999999999999999999999963  57788999999999999866 55666665555               


Q ss_pred             HHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHC
Q 010920           90 TVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH  130 (497)
Q Consensus        90 ~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~  130 (497)
                               +.+-..|..|.||-.-|-+.|..+++.+|-++
T Consensus       958 ---------asl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  958 ---------ASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             ---------hhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence                     44445789999999999999999999999765

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.28  E-value=4.9e-07  Score=89.36  Aligned_cols=51  Identities=24%  Similarity=0.534  Sum_probs=45.2

Q ss_pred             CCCCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920          439 DDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  490 (497)
Q Consensus       439 ~~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  490 (497)
                      .......|+||++.+.+++.+||+|.| |..|+..+......||+||..+..
T Consensus        22 ~Le~~l~C~IC~d~~~~PvitpCgH~F-Cs~CI~~~l~~~~~CP~Cr~~~~~   72 (397)
T TIGR00599        22 PLDTSLRCHICKDFFDVPVLTSCSHTF-CSLCIRRCLSNQPKCPLCRAEDQE   72 (397)
T ss_pred             ccccccCCCcCchhhhCccCCCCCCch-hHHHHHHHHhCCCCCCCCCCcccc
Confidence            355677999999999999999999999 999999998877789999998743

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=4.5e-07  Score=82.41  Aligned_cols=46  Identities=43%  Similarity=1.055  Sum_probs=39.9

Q ss_pred             CCcccccccccCCceEEeCCCCccchHHHHHH-HhccC-cccccccccc
Q 010920          442 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSE-IKAKK-GDCPVCRTKI  488 (497)
Q Consensus       442 ~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~-~~~~~-~~Cp~Cr~~i  488 (497)
                      .+..|.||++....+..+||||.| |..|+.. |..++ ..||+||+.+
T Consensus       214 ~d~kC~lC~e~~~~ps~t~CgHlF-C~~Cl~~~~t~~k~~~CplCRak~  261 (271)
T COG5574         214 ADYKCFLCLEEPEVPSCTPCGHLF-CLSCLLISWTKKKYEFCPLCRAKV  261 (271)
T ss_pred             cccceeeeecccCCcccccccchh-hHHHHHHHHHhhccccCchhhhhc
Confidence            356999999999999999999999 9999999 55443 5599999876

>smart00184 RING Ring finger

Probab=98.24  E-value=9.2e-07  Score=57.39  Aligned_cols=38  Identities=37%  Similarity=0.988  Sum_probs=34.2

Q ss_pred             cccccccCCceEEeCCCCccchHHHHHHHhc-cCcccccc
Q 010920          446 CVICWEAPVEGACVPCGHMAGCMSCLSEIKA-KKGDCPVC  484 (497)
Q Consensus       446 C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~-~~~~Cp~C  484 (497)
                      |+||++....++.+||+|.| |..|...|.. ...+||+|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~-c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTF-CRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChH-HHHHHHHHHHhCcCCCCCC
Confidence            78999999999999999999 9999999986 55679987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.24  E-value=6.8e-07  Score=58.92  Aligned_cols=35  Identities=40%  Similarity=0.963  Sum_probs=22.1

Q ss_pred             cccccccCCc----eEEeCCCCccchHHHHHHHhcc----Ccccc
Q 010920          446 CVICWEAPVE----GACVPCGHMAGCMSCLSEIKAK----KGDCP  482 (497)
Q Consensus       446 C~iC~~~~~~----~~~~pC~H~~~C~~C~~~~~~~----~~~Cp  482 (497)
                      |+||.+ +.+    ++.+||||.| |..|+.+|...    ..+||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~-c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVF-CKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EE-EHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHH-HHHHHHHHHhcCCCCeeeCc
Confidence            899999 877    8889999999 99999999973    24565

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=1e-06  Score=87.44  Aligned_cols=52  Identities=29%  Similarity=0.764  Sum_probs=44.5

Q ss_pred             CcccccccccCCceEEeCCCCccchHHHHHHHhcc-----Ccccccccccccc--eeEee
Q 010920          443 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-----KGDCPVCRTKINQ--VIRLY  495 (497)
Q Consensus       443 ~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~-----~~~Cp~Cr~~i~~--~~~~~  495 (497)
                      ...|+||++.+.-++.+.|||.| |..|+.+++..     .+.||+||..|.-  ..++|
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiF-C~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~  244 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIF-CGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF  244 (513)
T ss_pred             CCcCCcccCCCCcccccccCcee-eHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence            66999999999999999999999 99999999874     3789999998854  44443

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.07  E-value=1.3e-05  Score=84.33  Aligned_cols=125  Identities=17%  Similarity=0.101  Sum_probs=91.8

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHHcC----CCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHH
Q 010920           14 RQSKDELLYQWVIAGDVDAIRALRSQG----ASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEP   89 (497)
Q Consensus        14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~g----a~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~   89 (497)
                      ...+.--...|+..|+...|+..++.-    .++|..|.-|+++|+.|..+ .+.+++++|++++..+            
T Consensus        22 l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~n-enle~~eLLl~~~~~~------------   88 (822)
T KOG3609|consen   22 LNEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDN-ENLELQELLLDTSSEE------------   88 (822)
T ss_pred             cchhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceeccccc-ccHHHHHHHhcCcccc------------
Confidence            345666788999999999999988753    46788999999999999997 4466666666553221            


Q ss_pred             HHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccc--------cccccCCCCHHHHHhhhcCCHHHHH
Q 010920           90 TVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCG--------WLREFYGPSFLEALAPQLMSRKIWV  161 (497)
Q Consensus        90 ~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~--------~~~~~~G~T~Lh~~A~~~~~~~iv~  161 (497)
                                         ..+|.+|++.|..++|++|+.+.....+        ...-..+.|||. +||..++.||++
T Consensus        89 -------------------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPli-LAAh~NnyEil~  148 (822)
T KOG3609|consen   89 -------------------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLM-LAAHLNNFEILQ  148 (822)
T ss_pred             -------------------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHH-HHHHhcchHHHH
Confidence                               2378888888888888888876432210        012234678888 888888888888


Q ss_pred             HhhhCCCCCC
Q 010920          162 VVIPCGTANP  171 (497)
Q Consensus       162 ~Ll~~ga~~~  171 (497)
                      +|+.+|+.+.
T Consensus       149 ~Ll~kg~~i~  158 (822)
T KOG3609|consen  149 CLLTRGHCIP  158 (822)
T ss_pred             HHHHcCCCCC
Confidence            8888888754

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.05  E-value=1.5e-06  Score=81.29  Aligned_cols=49  Identities=27%  Similarity=0.632  Sum_probs=44.2

Q ss_pred             CCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920          441 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  490 (497)
Q Consensus       441 ~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  490 (497)
                      +.-..|-||+|-+..++++||+|.| |..|+....+....||.|+.++.+
T Consensus        21 D~lLRC~IC~eyf~ip~itpCsHtf-CSlCIR~~L~~~p~CP~C~~~~~E   69 (442)
T KOG0287|consen   21 DDLLRCGICFEYFNIPMITPCSHTF-CSLCIRKFLSYKPQCPTCCVTVTE   69 (442)
T ss_pred             HHHHHHhHHHHHhcCceeccccchH-HHHHHHHHhccCCCCCceecccch
Confidence            3445999999999999999999999 999999999988899999988744

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=9e-07  Score=92.31  Aligned_cols=53  Identities=25%  Similarity=0.624  Sum_probs=46.6

Q ss_pred             CCcccccccccCCceEEeCCCCccchHHHHHHHhc-cCcccccccccc--cceeEee
Q 010920          442 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKI--NQVIRLY  495 (497)
Q Consensus       442 ~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i--~~~~~~~  495 (497)
                      .-..|++|.+++++++...|+|.| |..|+..... +..+||.|..++  ..+.+||
T Consensus       642 ~~LkCs~Cn~R~Kd~vI~kC~H~F-C~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~  697 (698)
T KOG0978|consen  642 ELLKCSVCNTRWKDAVITKCGHVF-CEECVQTRYETRQRKCPKCNAAFGANDVHRIH  697 (698)
T ss_pred             hceeCCCccCchhhHHHHhcchHH-HHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence            345899999999999999999999 9999999887 448999999998  5577776

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.04  E-value=4.6e-06  Score=62.54  Aligned_cols=40  Identities=35%  Similarity=0.870  Sum_probs=33.4

Q ss_pred             ccccccccC-------------CceEEeCCCCccchHHHHHHHhccCccccccc
Q 010920          445 SCVICWEAP-------------VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCR  485 (497)
Q Consensus       445 ~C~iC~~~~-------------~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr  485 (497)
                      .|.||++.+             ..++..+|||.| ...|+.+|...+..||+||
T Consensus        21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIF-HFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEE-EHHHHHHHHTTSSB-TTSS
T ss_pred             cccccChhhhChhhhhcCCccccceEecccCCCE-EHHHHHHHHhcCCcCCCCC
Confidence            599999877             234566999999 9999999999888999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.01  E-value=2.8e-06  Score=77.78  Aligned_cols=49  Identities=29%  Similarity=0.481  Sum_probs=43.9

Q ss_pred             CCCCcccccccccCCceEEeCCCCccchHHHHHHHhccCccccccccccc
Q 010920          440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  489 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~  489 (497)
                      .+.-..|-||.+.+..++.++|||.| |+.|+.+.......||+||.+..
T Consensus        22 LDs~lrC~IC~~~i~ip~~TtCgHtF-CslCIR~hL~~qp~CP~Cr~~~~   70 (391)
T COG5432          22 LDSMLRCRICDCRISIPCETTCGHTF-CSLCIRRHLGTQPFCPVCREDPC   70 (391)
T ss_pred             chhHHHhhhhhheeecceecccccch-hHHHHHHHhcCCCCCccccccHH
Confidence            34455999999999999999999999 99999999998889999998764

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=2.2e-06  Score=77.73  Aligned_cols=48  Identities=27%  Similarity=0.645  Sum_probs=43.7

Q ss_pred             ccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccceeEeee
Q 010920          445 SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT  496 (497)
Q Consensus       445 ~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~  496 (497)
                      .|..|.+....++++||.|.++|..|...+.    .||+|+.++...+.+|.
T Consensus       160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~----~CPiC~~~~~s~~~v~~  207 (207)
T KOG1100|consen  160 SCRKCGEREATVLLLPCRHLCLCGICDESLR----ICPICRSPKTSSVEVNF  207 (207)
T ss_pred             cceecCcCCceEEeecccceEecccccccCc----cCCCCcChhhceeeccC
Confidence            3999999999999999999999999998744    79999999999988874

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.89  E-value=1.1e-05  Score=87.08  Aligned_cols=105  Identities=21%  Similarity=0.168  Sum_probs=79.3

Q ss_pred             HHHHHHHcCCCccccC--CCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCC
Q 010920           32 AIRALRSQGASLEWMD--KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCH  109 (497)
Q Consensus        32 ~v~~Ll~~ga~~n~~d--~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~  109 (497)
                      .+..=..++.++|+.+  ..|.|+||.|+..|.                         .-++++|+++|+++|..|..|+
T Consensus       636 ~~~~~~~~~~~~n~~~~~~~~~s~lh~a~~~~~-------------------------~~~~e~ll~~ga~vn~~d~~g~  690 (785)
T KOG0521|consen  636 RIATALAHGCCENWPVVLCIGCSLLHVAVGTGD-------------------------SGAVELLLQNGADVNALDSKGR  690 (785)
T ss_pred             hhhhhhcchhhhccchhhhcccchhhhhhccch-------------------------HHHHHHHHhcCCcchhhhccCC
Confidence            3333344556665532  468899999998743                         4455666677777888899999


Q ss_pred             CHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 010920          110 TALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI  164 (497)
Q Consensus       110 T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll  164 (497)
                      ||||.+...|+...+.+|+++|++.+  ..+..|.++|+ +|....+.+++-+|.
T Consensus       691 ~plh~~~~~g~~~~~~~ll~~~a~~~--a~~~~~~~~l~-~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  691 TPLHHATASGHTSIACLLLKRGADPN--AFDPDGKLPLD-IAMEAANADIVLLLR  742 (785)
T ss_pred             Ccchhhhhhcccchhhhhcccccccc--ccCccCcchhh-HHhhhccccHHHHHh
Confidence            99999999999999999999999998  88999999999 775556666555443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.88  E-value=1.3e-05  Score=86.20  Aligned_cols=130  Identities=15%  Similarity=-0.007  Sum_probs=99.7

Q ss_pred             hhhcCCCchHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHH
Q 010920           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEP   89 (497)
Q Consensus        11 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~-ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~   89 (497)
                      +.....|.|.||+++..++..+++.+++- |......|.+|.--+|+++. ++ .+++-+|+.                 
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~-lg-~ewA~ll~~-----------------  628 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAA-LG-YEWAFLPIS-----------------  628 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhh-cC-CceeEEEEe-----------------
Confidence            34467788999999999999999988885 66666777788888888554 24 555544442                 


Q ss_pred             HHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccc----cccccCCCCHHHHHhhhcCCHHHHHHhhh
Q 010920           90 TVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCG----WLREFYGPSFLEALAPQLMSRKIWVVVIP  165 (497)
Q Consensus        90 ~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~----~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~  165 (497)
                            -.|..++.+|..|+||||+|+.+|+..++..|.+.|++...    ....-.|.|+-. .|..+|+..+.-+|-+
T Consensus       629 ------~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~-la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  629 ------ADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAAD-LARANGHKGIAGYLSE  701 (975)
T ss_pred             ------ecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhh-hhhcccccchHHHHhh
Confidence                  24566788999999999999999999999999987765432    233446899999 8889999998888765


Q ss_pred             C
Q 010920          166 C  166 (497)
Q Consensus       166 ~  166 (497)
                      .
T Consensus       702 ~  702 (975)
T KOG0520|consen  702 K  702 (975)
T ss_pred             h
Confidence            5

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=8.9e-06  Score=75.12  Aligned_cols=50  Identities=28%  Similarity=0.662  Sum_probs=41.6

Q ss_pred             CCCCCcccccccccCC---ceEEeCCCCccchHHHHHHHhc-cCccccccccccc
Q 010920          439 DDGSSSSCVICWEAPV---EGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKIN  489 (497)
Q Consensus       439 ~~~~~~~C~iC~~~~~---~~~~~pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i~  489 (497)
                      +.+..-+|.|||+.+.   ..+.+||.|.| ...|.++|.. .+.+||+||.+|.
T Consensus       319 ea~~GveCaICms~fiK~d~~~vlPC~H~F-H~~Cv~kW~~~y~~~CPvCrt~iP  372 (374)
T COG5540         319 EADKGVECAICMSNFIKNDRLRVLPCDHRF-HVGCVDKWLLGYSNKCPVCRTAIP  372 (374)
T ss_pred             hcCCCceEEEEhhhhcccceEEEeccCcee-chhHHHHHHhhhcccCCccCCCCC
Confidence            3445579999999763   36678999999 9999999998 5679999999874

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.82  E-value=1.7e-05  Score=59.63  Aligned_cols=48  Identities=21%  Similarity=0.282  Sum_probs=39.2

Q ss_pred             CCcccccccccCCceEEeCCCCccchHHHHHHHhcc-Ccccccccccccc
Q 010920          442 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  490 (497)
Q Consensus       442 ~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~  490 (497)
                      +...|+||.+...+++.+||||.| +..|+++|... ...||+|+.++..
T Consensus         3 ~~f~CpIt~~lM~dPVi~~~G~ty-er~~I~~~l~~~~~~~P~t~~~l~~   51 (73)
T PF04564_consen    3 DEFLCPITGELMRDPVILPSGHTY-ERSAIERWLEQNGGTDPFTRQPLSE   51 (73)
T ss_dssp             GGGB-TTTSSB-SSEEEETTSEEE-EHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred             cccCCcCcCcHhhCceeCCcCCEE-cHHHHHHHHHcCCCCCCCCCCcCCc
Confidence            456999999999999999999999 99999999987 7899999998854

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.80  E-value=3.6e-05  Score=66.82  Aligned_cols=68  Identities=15%  Similarity=0.045  Sum_probs=62.9

Q ss_pred             CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCC-CcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCC
Q 010920           98 GANALVRNDDCHTALGVARIKGHINVVRAIESHI-CYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGT  168 (497)
Q Consensus        98 ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g-~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga  168 (497)
                      +-++|.+|..|+|+||.|+..|..+.+.+|+.+| +.+.  +.|..|.+++. +|-+.|..+.+..|.+.-.
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vg--v~d~ssldaaq-laek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVG--VTDESSLDAAQ-LAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCccccc--ccccccchHHH-HHHhcChHHHHHHHHHHhc
Confidence            4578999999999999999999999999999999 7888  89999999999 9999999999999987643

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.80  E-value=0.00011  Score=63.78  Aligned_cols=72  Identities=19%  Similarity=0.147  Sum_probs=58.3

Q ss_pred             CCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcC
Q 010920           40 GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG  119 (497)
Q Consensus        40 ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g  119 (497)
                      +.++|.+|..|+||||.|+..|+ .+.+.+|+.+|+                       +.+...|..|.+++.+|-..|
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~-~eavsyllgrg~-----------------------a~vgv~d~ssldaaqlaek~g   57 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGS-NEAVSYLLGRGV-----------------------AFVGVTDESSLDAAQLAEKGG   57 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcc-hhHHHHHhccCc-----------------------ccccccccccchHHHHHHhcC
Confidence            46899999999999999999865 555555554442                       566778999999999999999


Q ss_pred             CHHHHHHHHHCCCccc
Q 010920          120 HINVVRAIESHICYFC  135 (497)
Q Consensus       120 ~~~~v~~Ll~~g~~i~  135 (497)
                      +.+++..|.+.-.+-.
T Consensus        58 ~~~fvh~lfe~~~ets   73 (223)
T KOG2384|consen   58 AQAFVHSLFENDRETS   73 (223)
T ss_pred             hHHHHHHHHHHhccCC
Confidence            9999999998755544

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.76  E-value=2.6e-05  Score=84.39  Aligned_cols=88  Identities=14%  Similarity=-0.011  Sum_probs=72.9

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccC
Q 010920          105 NDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPS  184 (497)
Q Consensus       105 ~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~  184 (497)
                      -..|.|+||.|+..+..-.+++|+..|++++  ..|..|+|||| .+...|+...+..|+++|++.+..+..+..++..+
T Consensus       653 ~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn--~~d~~g~~plh-~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  653 LCIGCSLLHVAVGTGDSGAVELLLQNGADVN--ALDSKGRTPLH-HATASGHTSIACLLLKRGADPNAFDPDGKLPLDIA  729 (785)
T ss_pred             hhcccchhhhhhccchHHHHHHHHhcCCcch--hhhccCCCcch-hhhhhcccchhhhhccccccccccCccCcchhhHH
Confidence            3568899999999999999999999999998  89999999999 89999999999999999999887777777777777


Q ss_pred             CcCcCHHHHHH
Q 010920          185 LQDVQPRAVIA  195 (497)
Q Consensus       185 ~~~~~~~~~~~  195 (497)
                      ....+...++.
T Consensus       730 ~~~~~~d~~~l  740 (785)
T KOG0521|consen  730 MEAANADIVLL  740 (785)
T ss_pred             hhhccccHHHH
Confidence            55444433333

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.74  E-value=5.3e-05  Score=72.41  Aligned_cols=57  Identities=35%  Similarity=0.436  Sum_probs=51.9

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCC
Q 010920           18 DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA   75 (497)
Q Consensus        18 ~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga   75 (497)
                      .--|.+|++.|+++.|++|++.|.++|..|.-..+||.+|+.- ||.++|++|++.||
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLc-GHe~vvklLLenGA   93 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLC-GHEDVVKLLLENGA   93 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHc-CcHHHHHHHHHcCC
Confidence            4468999999999999999999999999999999999999998 66888888888876

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=1.8e-05  Score=76.30  Aligned_cols=46  Identities=28%  Similarity=0.721  Sum_probs=38.7

Q ss_pred             cccccccccCCc---eEEeCCCCccchHHHHHHHhccCcc-cccccccccc
Q 010920          444 SSCVICWEAPVE---GACVPCGHMAGCMSCLSEIKAKKGD-CPVCRTKINQ  490 (497)
Q Consensus       444 ~~C~iC~~~~~~---~~~~pC~H~~~C~~C~~~~~~~~~~-Cp~Cr~~i~~  490 (497)
                      ..|+||+|.+..   +..+||.|.| -..|+..|..+.++ ||+|+..|..
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~F-H~~CIDpWL~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKF-HVNCIDPWLTQTRTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCch-hhccchhhHhhcCccCCCCCCcCCC
Confidence            499999998764   5568999999 99999999987644 9999987743

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=2e-05  Score=74.74  Aligned_cols=47  Identities=30%  Similarity=0.855  Sum_probs=39.5

Q ss_pred             CCCcccccccccC-------------CceEEeCCCCccchHHHHHHHhccCcccccccccc
Q 010920          441 GSSSSCVICWEAP-------------VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI  488 (497)
Q Consensus       441 ~~~~~C~iC~~~~-------------~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i  488 (497)
                      ..+..|.||||..             +.+.-+||||.+ -.+|.+.|.++.-.||+||.++
T Consensus       285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHil-Hl~CLknW~ERqQTCPICr~p~  344 (491)
T COG5243         285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHIL-HLHCLKNWLERQQTCPICRRPV  344 (491)
T ss_pred             CCCCeEEEecccccCCCCccCcccccCCccccccccee-eHHHHHHHHHhccCCCcccCcc
Confidence            3556999999972             224668999999 9999999999888999999985

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.59  E-value=9e-05  Score=78.26  Aligned_cols=104  Identities=10%  Similarity=0.000  Sum_probs=80.9

Q ss_pred             hhhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHH
Q 010920           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEP   89 (497)
Q Consensus        10 ~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~   89 (497)
                      .+.+|.=|+++|+.|+.+-+.+++++|++++...       .-+|-+|+.. +.+++|++++.+........        
T Consensus        55 inc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~-~~v~~VE~ll~~~~~~~~~~--------  118 (822)
T KOG3609|consen   55 INCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAV-GSVPLVELLLVHFVDAPYLE--------  118 (822)
T ss_pred             hhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHH-HHHHHHHHHHhcccccchhc--------
Confidence            3556778999999999999999999999986654       3578888888 45999999998854432211        


Q ss_pred             HHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCccc
Q 010920           90 TVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC  135 (497)
Q Consensus        90 ~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~  135 (497)
                            ..+..-...-.-+.|||++||..++.||+++|+.+|+.+.
T Consensus       119 ------~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen  119 ------RSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             ------cccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence                  1222222234568999999999999999999999999886

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=97.56  E-value=2.8e-05  Score=74.41  Aligned_cols=50  Identities=34%  Similarity=0.768  Sum_probs=43.6

Q ss_pred             cccccccccCCceEEeCCCCccchHHHHHHHhcc--CcccccccccccceeEe
Q 010920          444 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK--KGDCPVCRTKINQVIRL  494 (497)
Q Consensus       444 ~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~--~~~Cp~Cr~~i~~~~~~  494 (497)
                      ..|.||-++-+++...||||.. |..|...|...  .-.||.||..|.+.-+|
T Consensus       370 eLCKICaendKdvkIEPCGHLl-Ct~CLa~WQ~sd~gq~CPFCRcEIKGte~v  421 (563)
T KOG1785|consen  370 ELCKICAENDKDVKIEPCGHLL-CTSCLAAWQDSDEGQTCPFCRCEIKGTEPV  421 (563)
T ss_pred             HHHHHhhccCCCcccccccchH-HHHHHHhhcccCCCCCCCceeeEeccccce
Confidence            5899999999999999999999 99999999853  35799999999765443

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=3.5e-05  Score=71.52  Aligned_cols=49  Identities=29%  Similarity=0.629  Sum_probs=41.8

Q ss_pred             CcccccccccCCceEEeCCCCccchHHHHHHHhc-cCccccccccccccee
Q 010920          443 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKINQVI  492 (497)
Q Consensus       443 ~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i~~~~  492 (497)
                      ..+|.||+...--++.++|+|.| |+.|++.... .++.|++||.+|.+.|
T Consensus         7 ~~eC~IC~nt~n~Pv~l~C~HkF-CyiCiKGsy~ndk~~CavCR~pids~i   56 (324)
T KOG0824|consen    7 KKECLICYNTGNCPVNLYCFHKF-CYICIKGSYKNDKKTCAVCRFPIDSTI   56 (324)
T ss_pred             CCcceeeeccCCcCccccccchh-hhhhhcchhhcCCCCCceecCCCCcch
Confidence            34999999988888999999999 9999988765 3456999999997755

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=7.3e-05  Score=70.54  Aligned_cols=49  Identities=24%  Similarity=0.767  Sum_probs=44.4

Q ss_pred             CCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920          441 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  490 (497)
Q Consensus       441 ~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  490 (497)
                      .++..|+||+-.+.+.++.||+|.- |+.|+.+..-..+.|=+|+..|..
T Consensus       420 sEd~lCpICyA~pi~Avf~PC~H~S-C~~CI~qHlmN~k~CFfCktTv~~  468 (489)
T KOG4692|consen  420 SEDNLCPICYAGPINAVFAPCSHRS-CYGCITQHLMNCKRCFFCKTTVID  468 (489)
T ss_pred             cccccCcceecccchhhccCCCCch-HHHHHHHHHhcCCeeeEecceeee
Confidence            5677999999999999999999999 999999988777889999988754

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.34  E-value=4.1e-05  Score=54.11  Aligned_cols=44  Identities=32%  Similarity=0.766  Sum_probs=24.1

Q ss_pred             CCcccccccccCCceE-EeCCCCccchHHHHHHHhccCcccccccccc
Q 010920          442 SSSSCVICWEAPVEGA-CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI  488 (497)
Q Consensus       442 ~~~~C~iC~~~~~~~~-~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i  488 (497)
                      +...|.+|.+....++ +..|.|.| |..|+..-..  ..||+|+.|.
T Consensus         6 ~lLrCs~C~~~l~~pv~l~~CeH~f-Cs~Ci~~~~~--~~CPvC~~Pa   50 (65)
T PF14835_consen    6 ELLRCSICFDILKEPVCLGGCEHIF-CSSCIRDCIG--SECPVCHTPA   50 (65)
T ss_dssp             HTTS-SSS-S--SS-B---SSS--B--TTTGGGGTT--TB-SSS--B-
T ss_pred             HhcCCcHHHHHhcCCceeccCccHH-HHHHhHHhcC--CCCCCcCChH
Confidence            3458999999999987 46999999 9999977543  3799999876

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=8.8e-05  Score=73.44  Aligned_cols=46  Identities=37%  Similarity=0.730  Sum_probs=40.4

Q ss_pred             CCCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccc
Q 010920          440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRT  486 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~  486 (497)
                      ..+...|+||++.+..+..+||+|.| |..|+..+......||.||.
T Consensus        10 ~~~~~~C~iC~~~~~~p~~l~C~H~~-c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen   10 LQEELTCPICLEYFREPVLLPCGHNF-CRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             ccccccChhhHHHhhcCccccccchH-hHHHHHHhcCCCcCCcccCC
Confidence            45677999999999999999999999 99999998864458999994

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.22  E-value=0.0006  Score=65.41  Aligned_cols=69  Identities=19%  Similarity=0.176  Sum_probs=57.1

Q ss_pred             ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcC
Q 010920           83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM  155 (497)
Q Consensus        83 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~  155 (497)
                      ++.|..+.|+.|++.|.++|..|.-..+||.+|+..||..+|++|+++|+-..   +|.+..---| +++.+.
T Consensus        44 cR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~---rdtf~G~RC~-YgaLnd  112 (516)
T KOG0511|consen   44 CRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICS---RDTFDGDRCH-YGALND  112 (516)
T ss_pred             hhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCccc---ccccCcchhh-hhhhhH
Confidence            88899999999999999999999999999999999999999999999998776   4444444445 455543

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.18  E-value=0.00033  Score=66.00  Aligned_cols=50  Identities=34%  Similarity=0.816  Sum_probs=42.9

Q ss_pred             CCCCcccccccccCCceEEeCCCCccchHHHHHHHhc--cCcccccccccccc
Q 010920          440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA--KKGDCPVCRTKINQ  490 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~--~~~~Cp~Cr~~i~~  490 (497)
                      .+++..|.||-+...-...+||+|.. |..|+.++.-  ..+.||+||..-+.
T Consensus        58 DEen~~C~ICA~~~TYs~~~PC~H~~-CH~Ca~RlRALY~~K~C~~CrTE~e~  109 (493)
T COG5236          58 DEENMNCQICAGSTTYSARYPCGHQI-CHACAVRLRALYMQKGCPLCRTETEA  109 (493)
T ss_pred             ccccceeEEecCCceEEEeccCCchH-HHHHHHHHHHHHhccCCCccccccce
Confidence            56778999999999999999999999 9999999876  45789999975543

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.15  E-value=0.00016  Score=76.41  Aligned_cols=48  Identities=35%  Similarity=0.728  Sum_probs=42.4

Q ss_pred             CCCCcccccccccCCc-----eEEeCCCCccchHHHHHHHhccCcccccccccc
Q 010920          440 DGSSSSCVICWEAPVE-----GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI  488 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~-----~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i  488 (497)
                      ......|.||+|....     +..+||+|.| |..|...|.++.-.||+||..+
T Consensus       288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hif-h~~CL~~W~er~qtCP~CR~~~  340 (543)
T KOG0802|consen  288 ALSDELCIICLEELHSGHNITPKRLPCGHIF-HDSCLRSWFERQQTCPTCRTVL  340 (543)
T ss_pred             hhcCCeeeeechhhccccccccceeecccch-HHHHHHHHHHHhCcCCcchhhh
Confidence            3446799999998888     7888999999 9999999999888999999854

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.08  E-value=0.00024  Score=70.62  Aligned_cols=49  Identities=31%  Similarity=0.807  Sum_probs=44.7

Q ss_pred             CCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920          441 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  490 (497)
Q Consensus       441 ~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  490 (497)
                      ..+..|+||++.+..++.+||||.+ |..|+.+...+...||.||..+.+
T Consensus        82 ~sef~c~vc~~~l~~pv~tpcghs~-c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPPVVTPCGHSF-CLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             cchhhhhhhHhhcCCCccccccccc-cHHHHHHHhccCCCCccccccccc
Confidence            5677999999999999999999999 999999988888899999988765

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.05  E-value=0.00093  Score=72.35  Aligned_cols=134  Identities=10%  Similarity=-0.068  Sum_probs=91.0

Q ss_pred             ccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhC-CCCCcccCCCCCCHHHHHHHcCCH
Q 010920           43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSC-GANALVRNDDCHTALGVARIKGHI  121 (497)
Q Consensus        43 ~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~-ga~~~~~~~~g~T~Lh~A~~~g~~  121 (497)
                      .......|+|-||+++.. .+.-                        .++.+++. +......|.+|.-.+|+++. ++.
T Consensus       567 ~~~~~~r~~lllhL~a~~-lyaw------------------------Lie~~~e~~~~~~~eld~d~qgV~hfca~-lg~  620 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAEL-LYAW------------------------LIEKVIEWAGSGDLELDRDGQGVIHFCAA-LGY  620 (975)
T ss_pred             cccCCCcchHHHHHHHHH-hHHH------------------------HHHHHhcccccCchhhcccCCChhhHhhh-cCC
Confidence            334456788889998887 4333                        33444443 44445567778888898554 455


Q ss_pred             HHHHHH-HHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcC
Q 010920          122 NVVRAI-ESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAK  200 (497)
Q Consensus       122 ~~v~~L-l~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~  200 (497)
                      +++-+| .-.|..++  .+|..|+|||| +|+..|+..++..|+.-|++.+...                         +
T Consensus       621 ewA~ll~~~~~~ai~--i~D~~G~tpL~-wAa~~G~e~l~a~l~~lga~~~~~t-------------------------d  672 (975)
T KOG0520|consen  621 EWAFLPISADGVAID--IRDRNGWTPLH-WAAFRGREKLVASLIELGADPGAVT-------------------------D  672 (975)
T ss_pred             ceeEEEEeecccccc--cccCCCCcccc-hHhhcCHHHHHHHHHHhcccccccc-------------------------C
Confidence            554444 55778888  89999999999 9999999999999999998764111                         1


Q ss_pred             CCCCCCCCCChHHHHHHhCChhHHHHHHhC
Q 010920          201 IDEPKFHQPDPSLTIYDQATKIRYKFASAN  230 (497)
Q Consensus       201 ~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~  230 (497)
                      ..--.-.|.++...+..+++..+.-++++.
T Consensus       673 ps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  673 PSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             CCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            122223466777777777777666666654

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=97.03  E-value=0.00019  Score=49.13  Aligned_cols=45  Identities=31%  Similarity=0.848  Sum_probs=36.9

Q ss_pred             CcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920          443 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  490 (497)
Q Consensus       443 ~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  490 (497)
                      ...|..|.......+++||+|++ |..|.....  ...||+|.++++.
T Consensus         7 ~~~~~~~~~~~~~~~~~pCgH~I-~~~~f~~~r--YngCPfC~~~~~~   51 (55)
T PF14447_consen    7 EQPCVFCGFVGTKGTVLPCGHLI-CDNCFPGER--YNGCPFCGTPFEF   51 (55)
T ss_pred             ceeEEEcccccccccccccccee-eccccChhh--ccCCCCCCCcccC
Confidence            45899999998888899999999 999966543  2379999998864

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.99  E-value=0.0003  Score=68.42  Aligned_cols=51  Identities=31%  Similarity=0.691  Sum_probs=41.8

Q ss_pred             CCCcccccccccCCceE-----E---eCCCCccchHHHHHHHh--cc-----Cccccccccccccee
Q 010920          441 GSSSSCVICWEAPVEGA-----C---VPCGHMAGCMSCLSEIK--AK-----KGDCPVCRTKINQVI  492 (497)
Q Consensus       441 ~~~~~C~iC~~~~~~~~-----~---~pC~H~~~C~~C~~~~~--~~-----~~~Cp~Cr~~i~~~~  492 (497)
                      .++..|.||++......     +   .+|.|.| |..|+..|.  ++     .+.||.||.+....+
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~-Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~  224 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSF-CLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN  224 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhh-hhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence            45669999999877666     4   6899999 999999999  44     588999998876544

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=96.97  E-value=0.00072  Score=51.21  Aligned_cols=33  Identities=30%  Similarity=0.644  Sum_probs=27.4

Q ss_pred             eEEeCCCCccchHHHHHHHhcc---Cccccccccccc
Q 010920          456 GACVPCGHMAGCMSCLSEIKAK---KGDCPVCRTKIN  489 (497)
Q Consensus       456 ~~~~pC~H~~~C~~C~~~~~~~---~~~Cp~Cr~~i~  489 (497)
                      .+.-.|+|.| ...|+.+|..+   +..||+||++..
T Consensus        47 lv~g~C~H~F-H~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   47 LVWGKCSHNF-HMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             eeeccCccHH-HHHHHHHHHccccCCCCCCCcCCeee
Confidence            3445899999 99999999984   478999998753

>smart00248 ANK ankyrin repeats

Probab=96.86  E-value=0.0019  Score=37.72  Aligned_cols=27  Identities=19%  Similarity=0.298  Sum_probs=16.1

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCc
Q 010920           17 KDELLYQWVIAGDVDAIRALRSQGASL   43 (497)
Q Consensus        17 G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~   43 (497)
                      |.||||+|+..|+.+++++|++.|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            456666666666666666666655543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.83  E-value=0.0027  Score=57.26  Aligned_cols=49  Identities=16%  Similarity=0.339  Sum_probs=42.4

Q ss_pred             CCCcccccccccCCc----eEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920          441 GSSSSCVICWEAPVE----GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  490 (497)
Q Consensus       441 ~~~~~C~iC~~~~~~----~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  490 (497)
                      ....+|+||.|...+    +++-||||+| |.+|.+++.+.-..||+|..+...
T Consensus       219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv-~~ecvEklir~D~v~pv~d~plkd  271 (303)
T KOG3039|consen  219 SKRYICPVTRDTLTNTTPCAVLRPSGHVV-TKECVEKLIRKDMVDPVTDKPLKD  271 (303)
T ss_pred             ccceecccchhhhcCccceEEeccCCcEe-eHHHHHHhccccccccCCCCcCcc
Confidence            367899999998766    5667999999 999999999877899999998854

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.75  E-value=0.00053  Score=67.77  Aligned_cols=49  Identities=31%  Similarity=0.584  Sum_probs=39.2

Q ss_pred             CCCCcccccccccC-----------------CceEEeCCCCccchHHHHHHHhcc-Cccccccccccc
Q 010920          440 DGSSSSCVICWEAP-----------------VEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKIN  489 (497)
Q Consensus       440 ~~~~~~C~iC~~~~-----------------~~~~~~pC~H~~~C~~C~~~~~~~-~~~Cp~Cr~~i~  489 (497)
                      ......|+|||...                 ++..++||.|.| -..|.++|.++ +..||.||.++.
T Consensus       568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hif-H~~CL~~WMd~ykl~CPvCR~pLP  634 (636)
T KOG0828|consen  568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIF-HRQCLLQWMDTYKLICPVCRCPLP  634 (636)
T ss_pred             hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHH-HHHHHHHHHhhhcccCCccCCCCC
Confidence            34567899999732                 235677999999 99999999994 458999999875

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.72  E-value=0.0015  Score=60.04  Aligned_cols=50  Identities=26%  Similarity=0.745  Sum_probs=40.6

Q ss_pred             CCCCcccccccccCCceEEe-CCCCccchHHHHHHHhc--cCcccccccccccc
Q 010920          440 DGSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKA--KKGDCPVCRTKINQ  490 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~-pC~H~~~C~~C~~~~~~--~~~~Cp~Cr~~i~~  490 (497)
                      .....+|++|-+.+..+... +|||.+ |+.|+..-..  .+-.||.|..++..
T Consensus       236 ~t~~~~C~~Cg~~PtiP~~~~~C~Hiy-CY~Ci~ts~~~~asf~Cp~Cg~~~~~  288 (298)
T KOG2879|consen  236 GTSDTECPVCGEPPTIPHVIGKCGHIY-CYYCIATSRLWDASFTCPLCGENVEP  288 (298)
T ss_pred             ccCCceeeccCCCCCCCeeecccccee-ehhhhhhhhcchhhcccCccCCCCcc
Confidence            34556999999999987766 699999 9999987665  34689999988763

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.66  E-value=0.00018  Score=68.35  Aligned_cols=53  Identities=23%  Similarity=0.476  Sum_probs=42.0

Q ss_pred             CCCCCcccccccccCCceEEe-CCCCccchHHHHHHHhc-cCccccccccccccee
Q 010920          439 DDGSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKA-KKGDCPVCRTKINQVI  492 (497)
Q Consensus       439 ~~~~~~~C~iC~~~~~~~~~~-pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i~~~~  492 (497)
                      .......|+||++.......+ -|.|.| |..|+..-.+ ....||.||+......
T Consensus        39 ~~~~~v~c~icl~llk~tmttkeClhrf-c~~ci~~a~r~gn~ecptcRk~l~Skr   93 (381)
T KOG0311|consen   39 MFDIQVICPICLSLLKKTMTTKECLHRF-CFDCIWKALRSGNNECPTCRKKLVSKR   93 (381)
T ss_pred             HhhhhhccHHHHHHHHhhcccHHHHHHH-HHHHHHHHHHhcCCCCchHHhhccccc
Confidence            345667999999988765544 799999 9999988766 5678999999875543

>smart00248 ANK ankyrin repeats

Probab=96.32  E-value=0.0069  Score=35.15  Aligned_cols=29  Identities=24%  Similarity=0.274  Sum_probs=21.9

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCccc
Q 010920          107 DCHTALGVARIKGHINVVRAIESHICYFC  135 (497)
Q Consensus       107 ~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~  135 (497)
                      .|.||||+|+..++.+++++|+.++.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            36778888888888888888887776553

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=96.28  E-value=0.0016  Score=56.64  Aligned_cols=49  Identities=24%  Similarity=0.457  Sum_probs=42.5

Q ss_pred             CcccccccccCCceEEeCCCCccchHHHHHHHhccCccccccccccccee
Q 010920          443 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVI  492 (497)
Q Consensus       443 ~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~  492 (497)
                      ...|.||......+|.+.|||.| |..|+.+-......|-+|.+...+.+
T Consensus       196 PF~C~iCKkdy~spvvt~CGH~F-C~~Cai~~y~kg~~C~~Cgk~t~G~f  244 (259)
T COG5152         196 PFLCGICKKDYESPVVTECGHSF-CSLCAIRKYQKGDECGVCGKATYGRF  244 (259)
T ss_pred             ceeehhchhhccchhhhhcchhH-HHHHHHHHhccCCcceecchhhccce
Confidence            35999999999999999999999 99999887777778999988765544

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.14  E-value=0.0018  Score=60.25  Aligned_cols=49  Identities=24%  Similarity=0.518  Sum_probs=43.7

Q ss_pred             cccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccceeE
Q 010920          444 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIR  493 (497)
Q Consensus       444 ~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~  493 (497)
                      ..|-||...+.++|.+.|+|.| |..|+.+-.....+|.+|.+++.+++.
T Consensus       242 f~c~icr~~f~~pVvt~c~h~f-c~~ca~~~~qk~~~c~vC~~~t~g~~~  290 (313)
T KOG1813|consen  242 FKCFICRKYFYRPVVTKCGHYF-CEVCALKPYQKGEKCYVCSQQTHGSFN  290 (313)
T ss_pred             ccccccccccccchhhcCCcee-ehhhhccccccCCcceecccccccccc
Confidence            4799999999999999999999 999998877777899999998877653

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=96.13  E-value=0.0057  Score=51.79  Aligned_cols=52  Identities=27%  Similarity=0.626  Sum_probs=38.8

Q ss_pred             CcccccccccCCceEEeCCC-Ccc-----c------hHHHHHHHhcc-------------------------------Cc
Q 010920          443 SSSCVICWEAPVEGACVPCG-HMA-----G------CMSCLSEIKAK-------------------------------KG  479 (497)
Q Consensus       443 ~~~C~iC~~~~~~~~~~pC~-H~~-----~------C~~C~~~~~~~-------------------------------~~  479 (497)
                      +..|+||||.+-+.|++-|. |--     +      -..|..+++..                               ..
T Consensus         2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L   81 (162)
T PF07800_consen    2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL   81 (162)
T ss_pred             CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence            34899999999999998876 222     1      35677777641                               24


Q ss_pred             ccccccccccceeEe
Q 010920          480 DCPVCRTKINQVIRL  494 (497)
Q Consensus       480 ~Cp~Cr~~i~~~~~~  494 (497)
                      .||+||..|.+.+.+
T Consensus        82 ~CPLCRG~V~GWtvv   96 (162)
T PF07800_consen   82 ACPLCRGEVKGWTVV   96 (162)
T ss_pred             cCccccCceeceEEc
Confidence            699999999887765

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=95.97  E-value=0.0039  Score=59.49  Aligned_cols=29  Identities=38%  Similarity=0.945  Sum_probs=25.0

Q ss_pred             CCCCccchHHHHHHHhc-cCccccccccccc
Q 010920          460 PCGHMAGCMSCLSEIKA-KKGDCPVCRTKIN  489 (497)
Q Consensus       460 pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i~  489 (497)
                      +|||.| |..|+..+.. .+..||.|+.++.
T Consensus        25 ~CGH~~-C~sCv~~l~~~~~~~CP~C~~~lr   54 (309)
T TIGR00570        25 VCGHTL-CESCVDLLFVRGSGSCPECDTPLR   54 (309)
T ss_pred             CCCCcc-cHHHHHHHhcCCCCCCCCCCCccc
Confidence            899999 9999999764 4578999998874

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=95.77  E-value=0.005  Score=59.15  Aligned_cols=46  Identities=30%  Similarity=0.818  Sum_probs=38.7

Q ss_pred             CCCcccccccccCCceEEeCC--CCccchHHHHHHHhccCcccccccccccce
Q 010920          441 GSSSSCVICWEAPVEGACVPC--GHMAGCMSCLSEIKAKKGDCPVCRTKINQV  491 (497)
Q Consensus       441 ~~~~~C~iC~~~~~~~~~~pC--~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~  491 (497)
                      .+-..|+||.+....+++ .|  ||.. |..|..++..   +||.||.+|..+
T Consensus        46 ~~lleCPvC~~~l~~Pi~-QC~nGHla-CssC~~~~~~---~CP~Cr~~~g~~   93 (299)
T KOG3002|consen   46 LDLLDCPVCFNPLSPPIF-QCDNGHLA-CSSCRTKVSN---KCPTCRLPIGNI   93 (299)
T ss_pred             hhhccCchhhccCcccce-ecCCCcEe-hhhhhhhhcc---cCCccccccccH
Confidence            345699999999999888 67  6999 9999987775   899999998743

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.75  E-value=0.0063  Score=60.70  Aligned_cols=41  Identities=17%  Similarity=0.276  Sum_probs=28.2

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHH
Q 010920           18 DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVAC   58 (497)
Q Consensus        18 ~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa   58 (497)
                      -|+||||+..|.-++|.+||+.|+|+..+|..|.||.+++.
T Consensus       431 sT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  431 STFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            56677777777777777777777776667777777766655

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=95.71  E-value=0.006  Score=40.90  Aligned_cols=42  Identities=31%  Similarity=0.755  Sum_probs=20.7

Q ss_pred             cccccccC--CceEEe--CCCCccchHHHHHHHhc-cCcccccccccc
Q 010920          446 CVICWEAP--VEGACV--PCGHMAGCMSCLSEIKA-KKGDCPVCRTKI  488 (497)
Q Consensus       446 C~iC~~~~--~~~~~~--pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i  488 (497)
                      |++|.+..  .+..+.  +|++.+ |..|..++.. ..+.||-||++.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~I-C~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQI-CRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcH-HHHHHHHHHhccCCCCCCCCCCC
Confidence            56666544  333455  456777 9999999996 578999999864

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.65  E-value=0.0049  Score=56.49  Aligned_cols=48  Identities=27%  Similarity=0.554  Sum_probs=37.8

Q ss_pred             CCcccccccccCCc----------eEEeCCCCccchHHHHHHHhc--cCcccccccccccc
Q 010920          442 SSSSCVICWEAPVE----------GACVPCGHMAGCMSCLSEIKA--KKGDCPVCRTKINQ  490 (497)
Q Consensus       442 ~~~~C~iC~~~~~~----------~~~~pC~H~~~C~~C~~~~~~--~~~~Cp~Cr~~i~~  490 (497)
                      ++..|.||-...-.          ..-+.|+|.| -..|+..|..  ++-.||+|++.|+.
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvF-HEfCIrGWcivGKkqtCPYCKekVdl  282 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVF-HEFCIRGWCIVGKKQTCPYCKEKVDL  282 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheeeecccch-HHHhhhhheeecCCCCCchHHHHhhH
Confidence            45699999865433          3357999999 9999999997  44679999998854

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=95.60  E-value=0.0094  Score=58.75  Aligned_cols=41  Identities=32%  Similarity=0.628  Sum_probs=33.3

Q ss_pred             CcccccccccCCc----eEEeCCCCccchHHHHHHHhccCcccccccc
Q 010920          443 SSSCVICWEAPVE----GACVPCGHMAGCMSCLSEIKAKKGDCPVCRT  486 (497)
Q Consensus       443 ~~~C~iC~~~~~~----~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~  486 (497)
                      -..|+||+++.-.    ++-++|.|.| -..|..+|...  .||+||=
T Consensus       175 LPTCpVCLERMD~s~~gi~t~~c~Hsf-h~~cl~~w~~~--scpvcR~  219 (493)
T KOG0804|consen  175 LPTCPVCLERMDSSTTGILTILCNHSF-HCSCLMKWWDS--SCPVCRY  219 (493)
T ss_pred             CCCcchhHhhcCccccceeeeeccccc-chHHHhhcccC--cChhhhh
Confidence            3499999987643    3556999999 88899999975  8999984

>PF04641 Rtf2: Rtf2 RING-finger

Probab=95.45  E-value=0.015  Score=55.33  Aligned_cols=49  Identities=24%  Similarity=0.415  Sum_probs=39.5

Q ss_pred             CCCCcccccccccC----CceEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920          440 DGSSSSCVICWEAP----VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  490 (497)
Q Consensus       440 ~~~~~~C~iC~~~~----~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  490 (497)
                      ......|+|....+    .-+.+.||||+| +..++..+. ....||+|..++..
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~-s~~alke~k-~~~~Cp~c~~~f~~  162 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVF-SEKALKELK-KSKKCPVCGKPFTE  162 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEe-eHHHHHhhc-ccccccccCCcccc
Confidence            45667999998766    346677999999 999999996 34679999999843

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.41  E-value=0.03  Score=56.07  Aligned_cols=71  Identities=14%  Similarity=0.087  Sum_probs=54.6

Q ss_pred             HHHHHHHHhCCCCCcc------cCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 010920           88 EPTVRLLLSCGANALV------RNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV  161 (497)
Q Consensus        88 ~~~v~~Ll~~ga~~~~------~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~  161 (497)
                      ...|++|.++++..|.      .+..--|+||+|+..|..++|.+||+.|+|..  .+|..|.||.. ++.   +.++=.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~--~kd~~Grtpy~-ls~---nkdVk~  477 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPS--TKDGAGRTPYS-LSA---NKDVKS  477 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCch--hcccCCCCccc-ccc---cHHHHH
Confidence            5667778877776543      23446789999999999999999999999998  89999999999 554   444444


Q ss_pred             Hhh
Q 010920          162 VVI  164 (497)
Q Consensus       162 ~Ll  164 (497)
                      .++
T Consensus       478 ~F~  480 (591)
T KOG2505|consen  478 IFI  480 (591)
T ss_pred             HHH
Confidence            333

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=95.27  E-value=0.018  Score=39.32  Aligned_cols=40  Identities=23%  Similarity=0.646  Sum_probs=31.7

Q ss_pred             ccccccc--cCCceEEeCCC-----CccchHHHHHHHhcc--Cccccccc
Q 010920          445 SCVICWE--APVEGACVPCG-----HMAGCMSCLSEIKAK--KGDCPVCR  485 (497)
Q Consensus       445 ~C~iC~~--~~~~~~~~pC~-----H~~~C~~C~~~~~~~--~~~Cp~Cr  485 (497)
                      .|-||++  ...+....||.     |.+ -..|..+|...  +..||+|+
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~v-H~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYV-HQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHH-HHHHHHHHHHHcCCCcCCCCC
Confidence            4889997  55667788996     666 99999999974  35899995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.20  E-value=0.12  Score=46.74  Aligned_cols=47  Identities=11%  Similarity=0.124  Sum_probs=24.9

Q ss_pred             HHHHHHHHCC-Ccccc-cccccCCCCHHHHHhhhcCCHHHHHHhhhCCCC
Q 010920          122 NVVRAIESHI-CYFCG-WLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA  169 (497)
Q Consensus       122 ~~v~~Ll~~g-~~i~~-~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~  169 (497)
                      .++++.+.+| +++|. ..+-..|.|-|. -|...++.+++.+|+++||-
T Consensus       231 kvL~~Fi~~Glv~vN~~F~~~NSGdtMLD-NA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  231 KVLEYFINRGLVDVNKKFQKVNSGDTMLD-NAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             HHHHHHHhccccccchhhhccCCcchHHH-hHHhcCcHHHHHHHHHcCcc
Confidence            4455555555 23331 123345666666 66666666666666666653

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=95.13  E-value=0.008  Score=60.67  Aligned_cols=51  Identities=31%  Similarity=0.683  Sum_probs=44.3

Q ss_pred             CCCCcccccccccCCceEE-eCCCCccchHHHHHHHhccCcccccccccccce
Q 010920          440 DGSSSSCVICWEAPVEGAC-VPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQV  491 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~-~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~  491 (497)
                      ..++..|++|+....+++. +.|||.| |..|...+......||.|+..+...
T Consensus        18 ~~~~l~C~~C~~vl~~p~~~~~cgh~f-C~~C~~~~~~~~~~cp~~~~~~~~~   69 (391)
T KOG0297|consen   18 LDENLLCPICMSVLRDPVQTTTCGHRF-CAGCLLESLSNHQKCPVCRQELTQA   69 (391)
T ss_pred             CcccccCccccccccCCCCCCCCCCcc-cccccchhhccCcCCcccccccchh
Confidence            4566799999999999998 4999999 9999999998888999998876443

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=94.57  E-value=0.023  Score=53.80  Aligned_cols=48  Identities=31%  Similarity=0.816  Sum_probs=35.7

Q ss_pred             CCCcccccccccC--CceEEe--CCCCccchHHHHHHHhc-cCccccccccccc
Q 010920          441 GSSSSCVICWEAP--VEGACV--PCGHMAGCMSCLSEIKA-KKGDCPVCRTKIN  489 (497)
Q Consensus       441 ~~~~~C~iC~~~~--~~~~~~--pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i~  489 (497)
                      +++..|+.|++..  .+--|.  |||-.+ |..|...+.. ..+.||-||+...
T Consensus        12 deed~cplcie~mditdknf~pc~cgy~i-c~fc~~~irq~lngrcpacrr~y~   64 (480)
T COG5175          12 DEEDYCPLCIEPMDITDKNFFPCPCGYQI-CQFCYNNIRQNLNGRCPACRRKYD   64 (480)
T ss_pred             cccccCcccccccccccCCcccCCcccHH-HHHHHHHHHhhccCCChHhhhhcc
Confidence            3444699999864  334444  667777 9999998886 5689999998763

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=94.52  E-value=0.023  Score=53.88  Aligned_cols=53  Identities=23%  Similarity=0.551  Sum_probs=40.8

Q ss_pred             CCcccccccccCCceE-EeCCCCccchHHHHHHHhccCcccccccccc--cceeEee
Q 010920          442 SSSSCVICWEAPVEGA-CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI--NQVIRLY  495 (497)
Q Consensus       442 ~~~~C~iC~~~~~~~~-~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i--~~~~~~~  495 (497)
                      ....|+||+....+.. +.--|-+| |+.|+-......+.||+-..++  .+.+++|
T Consensus       299 ~~~~CpvClk~r~Nptvl~vSGyVf-CY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~  354 (357)
T KOG0826|consen  299 DREVCPVCLKKRQNPTVLEVSGYVF-CYPCIFSYVVNYGHCPVTGYPASVDHLIRLF  354 (357)
T ss_pred             ccccChhHHhccCCCceEEecceEE-eHHHHHHHHHhcCCCCccCCcchHHHHHHHh
Confidence            4459999999887644 44568888 9999999998888999876554  5566655

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.49  E-value=0.02  Score=55.96  Aligned_cols=43  Identities=33%  Similarity=0.692  Sum_probs=32.9

Q ss_pred             CCcccccccccCCc---eEEeCCCCccchHHHHHHHhc--------cCccccccc
Q 010920          442 SSSSCVICWEAPVE---GACVPCGHMAGCMSCLSEIKA--------KKGDCPVCR  485 (497)
Q Consensus       442 ~~~~C~iC~~~~~~---~~~~pC~H~~~C~~C~~~~~~--------~~~~Cp~Cr  485 (497)
                      ....|+||++...-   .+++||+|+| |..|....-+        +..+||-|.
T Consensus       183 slf~C~ICf~e~~G~~c~~~lpC~Hv~-Ck~C~kdY~~~~i~eg~v~~l~Cp~~~  236 (445)
T KOG1814|consen  183 SLFDCCICFEEQMGQHCFKFLPCSHVF-CKSCLKDYFTIQIQEGQVSCLKCPDPK  236 (445)
T ss_pred             hcccceeeehhhcCcceeeecccchHH-HHHHHHHHHHHhhhcceeeeecCCCCC
Confidence            44799999998754   7788999999 9999877654        235677553

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=94.31  E-value=0.011  Score=61.82  Aligned_cols=52  Identities=21%  Similarity=0.391  Sum_probs=41.0

Q ss_pred             CCcccccccccCCceE---EeCCCCccchHHHHHHHhccCcccccccccccceeEe
Q 010920          442 SSSSCVICWEAPVEGA---CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRL  494 (497)
Q Consensus       442 ~~~~C~iC~~~~~~~~---~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~  494 (497)
                      ....|++|+....+..   -.+|+|.| |..|+..|.+---.||+||..+..++.+
T Consensus       122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~F-C~~Ci~sWsR~aqTCPiDR~EF~~v~V~  176 (1134)
T KOG0825|consen  122 VENQCPNCLKSCNDQLEESEKHTAHYF-CEECVGSWSRCAQTCPVDRGEFGEVKVL  176 (1134)
T ss_pred             hhhhhhHHHHHHHHHhhcccccccccc-HHHHhhhhhhhcccCchhhhhhheeeee
Confidence            4458999997665532   34999999 9999999998666899999887666543

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.05  E-value=0.047  Score=36.03  Aligned_cols=46  Identities=26%  Similarity=0.740  Sum_probs=26.6

Q ss_pred             ccccccccCCceEEeCCCCccchHHHHHHHhccCccccccccccccee
Q 010920          445 SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVI  492 (497)
Q Consensus       445 ~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~  492 (497)
                      -|.-|+-.....  +.|..-++|..|...|...+..||+|..++...+
T Consensus         4 nCKsCWf~~k~L--i~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtki   49 (50)
T PF03854_consen    4 NCKSCWFANKGL--IKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKI   49 (50)
T ss_dssp             ---SS-S--SSE--EE-SS-EEEHHHHHHT-SSSSEETTTTEE----S
T ss_pred             cChhhhhcCCCe--eeecchhHHHHHHHHHhccccCCCcccCcCcccc
Confidence            466666555554  4588555599999999999999999999886654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=94.01  E-value=0.052  Score=38.30  Aligned_cols=41  Identities=22%  Similarity=0.335  Sum_probs=28.9

Q ss_pred             CCcccccccccCCceEEe-CCCCccchHHHHHHHhc--cCccccc
Q 010920          442 SSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKA--KKGDCPV  483 (497)
Q Consensus       442 ~~~~C~iC~~~~~~~~~~-pC~H~~~C~~C~~~~~~--~~~~Cp~  483 (497)
                      ....|+|.+..+.+++.- .|+|.| ....+..+..  ...+||+
T Consensus        10 ~~~~CPiT~~~~~~PV~s~~C~H~f-ek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   10 ISLKCPITLQPFEDPVKSKKCGHTF-EKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             --SB-TTTSSB-SSEEEESSS--EE-EHHHHHHHCTTTS-EE-SC
T ss_pred             eccCCCCcCChhhCCcCcCCCCCee-cHHHHHHHHHhcCCCCCCC
Confidence            446999999999998764 999999 9999999993  4578998

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=93.98  E-value=0.026  Score=60.68  Aligned_cols=44  Identities=30%  Similarity=0.720  Sum_probs=38.4

Q ss_pred             cccccccccCCceEEeCCCCccchHHHHHHHhcc--Cccccccccccc
Q 010920          444 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK--KGDCPVCRTKIN  489 (497)
Q Consensus       444 ~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~--~~~Cp~Cr~~i~  489 (497)
                      ..|.+|++ ...++.++|+|.+ |.+|.......  ...||+||..+.
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~-c~~c~~~~i~~~~~~~~~~cr~~l~  500 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDF-CVECLKKSIQQSENAPCPLCRNVLK  500 (674)
T ss_pred             cccccccc-cccceeecccchH-HHHHHHhccccccCCCCcHHHHHHH
Confidence            69999999 8888899999999 99999998873  357999998774

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=93.82  E-value=0.015  Score=55.23  Aligned_cols=55  Identities=22%  Similarity=0.528  Sum_probs=45.2

Q ss_pred             CCCCcccccccccCCceEEe-CCCCccchHHHHHHHhccCcccccccccccceeEee
Q 010920          440 DGSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY  495 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~-pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~  495 (497)
                      ....-.|.+|-.-+.|+..+ -|-|.| |..|+.+.......||.|...|-++.++.
T Consensus        12 ~n~~itC~LC~GYliDATTI~eCLHTF-CkSCivk~l~~~~~CP~C~i~ih~t~pl~   67 (331)
T KOG2660|consen   12 LNPHITCRLCGGYLIDATTITECLHTF-CKSCIVKYLEESKYCPTCDIVIHKTHPLL   67 (331)
T ss_pred             cccceehhhccceeecchhHHHHHHHH-HHHHHHHHHHHhccCCccceeccCccccc
Confidence            34456999999988876543 799999 99999999888889999999988776543

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=93.77  E-value=0.024  Score=56.90  Aligned_cols=48  Identities=23%  Similarity=0.612  Sum_probs=40.0

Q ss_pred             CCCCcccccccccCCceEEeCCCCccchHHHHHHHhc-----cCcccccccccc
Q 010920          440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA-----KKGDCPVCRTKI  488 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~-----~~~~Cp~Cr~~i  488 (497)
                      ..+..+|.+|.|...+.+...|.|.| |..|+.....     ....||.|-...
T Consensus       533 nk~~~~C~lc~d~aed~i~s~ChH~F-CrlCi~eyv~~f~~~~nvtCP~C~i~L  585 (791)
T KOG1002|consen  533 NKGEVECGLCHDPAEDYIESSCHHKF-CRLCIKEYVESFMENNNVTCPVCHIGL  585 (791)
T ss_pred             ccCceeecccCChhhhhHhhhhhHHH-HHHHHHHHHHhhhcccCCCCccccccc
Confidence            34556999999999999999999999 9999977664     347899997543

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=93.25  E-value=0.033  Score=50.21  Aligned_cols=45  Identities=27%  Similarity=0.636  Sum_probs=34.6

Q ss_pred             CCCccccccccc---CCceEEe--C-CCCccchHHHHHHHhc-cCcccc--cccc
Q 010920          441 GSSSSCVICWEA---PVEGACV--P-CGHMAGCMSCLSEIKA-KKGDCP--VCRT  486 (497)
Q Consensus       441 ~~~~~C~iC~~~---~~~~~~~--p-C~H~~~C~~C~~~~~~-~~~~Cp--~Cr~  486 (497)
                      .++..|+||...   -.++.++  | |-|.. |.+|..++-. .+..||  -|.+
T Consensus         8 ~~d~~CPvCksDrYLnPdik~linPECyHrm-CESCvdRIFs~GpAqCP~~gC~k   61 (314)
T COG5220           8 MEDRRCPVCKSDRYLNPDIKILINPECYHRM-CESCVDRIFSRGPAQCPYKGCGK   61 (314)
T ss_pred             hhcccCCccccccccCCCeEEEECHHHHHHH-HHHHHHHHhcCCCCCCCCccHHH
Confidence            345699999863   3455555  7 99999 9999999886 568899  7754

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=93.18  E-value=0.025  Score=41.87  Aligned_cols=45  Identities=33%  Similarity=0.778  Sum_probs=22.5

Q ss_pred             cccccccccCC------ceEEe--CCCCccchHHHHHHHhcc-----------Cccccccccccc
Q 010920          444 SSCVICWEAPV------EGACV--PCGHMAGCMSCLSEIKAK-----------KGDCPVCRTKIN  489 (497)
Q Consensus       444 ~~C~iC~~~~~------~~~~~--pC~H~~~C~~C~~~~~~~-----------~~~Cp~Cr~~i~  489 (497)
                      ..|.||+...-      +.+.-  .|++.| -..|..+|...           .++||.|+.+|.
T Consensus         3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~f-H~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    3 LECGICYSYRLDDGEIPDVVCPNPSCGKKF-HLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             -S-SSS--SS-TT-----B--S-TT----B--SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCcCCcEecCCCCcCceEcCCcccCCHH-HHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            48999997643      23332  688777 88899998752           267999999885

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=92.69  E-value=0.94  Score=41.14  Aligned_cols=48  Identities=8%  Similarity=-0.013  Sum_probs=39.7

Q ss_pred             CHHHHHHHHhCC-CCCcc---cCCCCCCHHHHHHHcCCHHHHHHHHHCCCcc
Q 010920           87 LEPTVRLLLSCG-ANALV---RNDDCHTALGVARIKGHINVVRAIESHICYF  134 (497)
Q Consensus        87 ~~~~v~~Ll~~g-a~~~~---~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i  134 (497)
                      ...+++.+|..| +++|.   +-+.|.|-|.-|..+++.+++.+|+++|+-.
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence            356788888888 45654   3468999999999999999999999999843

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=92.15  E-value=0.031  Score=52.34  Aligned_cols=32  Identities=25%  Similarity=0.853  Sum_probs=25.5

Q ss_pred             EeCCCCccchHHHHHHHhccCccccccccccccee
Q 010920          458 CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVI  492 (497)
Q Consensus       458 ~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~  492 (497)
                      ++||.|+| |.+|+..-..  +.||.|-.+|..+.
T Consensus       106 mIPCkHvF-Cl~CAr~~~d--K~Cp~C~d~VqrIe  137 (389)
T KOG2932|consen  106 MIPCKHVF-CLECARSDSD--KICPLCDDRVQRIE  137 (389)
T ss_pred             ccccchhh-hhhhhhcCcc--ccCcCcccHHHHHH
Confidence            56999999 9999877654  48999988775543

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=91.81  E-value=0.18  Score=37.34  Aligned_cols=31  Identities=26%  Similarity=0.439  Sum_probs=27.4

Q ss_pred             EEeCCCCccchHHHHHHHhccCcccccccccc
Q 010920          457 ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI  488 (497)
Q Consensus       457 ~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i  488 (497)
                      +-=-|.|.| -..|+.+|..++..||++|++.
T Consensus        50 ~wG~CnHaF-H~HCI~rWL~Tk~~CPld~q~w   80 (88)
T COG5194          50 VWGVCNHAF-HDHCIYRWLDTKGVCPLDRQTW   80 (88)
T ss_pred             EEEecchHH-HHHHHHHHHhhCCCCCCCCcee
Confidence            334799999 9999999999999999999865

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=91.30  E-value=0.099  Score=56.31  Aligned_cols=48  Identities=27%  Similarity=0.737  Sum_probs=36.3

Q ss_pred             CCCccccccccc-------CCceEEeCCCCccchHHHHHHHhcc--Cccccccccccc
Q 010920          441 GSSSSCVICWEA-------PVEGACVPCGHMAGCMSCLSEIKAK--KGDCPVCRTKIN  489 (497)
Q Consensus       441 ~~~~~C~iC~~~-------~~~~~~~pC~H~~~C~~C~~~~~~~--~~~Cp~Cr~~i~  489 (497)
                      ....+|.||+..       .+.-.+-.|+|-| ...|..+|-..  +..||+||..|.
T Consensus      1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKF-H~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKF-HTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             CCcchhhHHHHHHHHHhccCCccccchhhhhh-hHHHHHHHHHhcCCCCCCccccccc
Confidence            445699999863       2233344699999 99999999974  478999998764

>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ]

Probab=91.24  E-value=0.06  Score=52.61  Aligned_cols=54  Identities=28%  Similarity=0.615  Sum_probs=0.0

Q ss_pred             CCccccccccc-------------------CCceEEeCCCCccchHHHHHHHhcc---------Ccccccccccccc---
Q 010920          442 SSSSCVICWEA-------------------PVEGACVPCGHMAGCMSCLSEIKAK---------KGDCPVCRTKINQ---  490 (497)
Q Consensus       442 ~~~~C~iC~~~-------------------~~~~~~~pC~H~~~C~~C~~~~~~~---------~~~Cp~Cr~~i~~---  490 (497)
                      ....|++|+..                   +.+.+|.||||++ -...+.-|...         ...||.|-.++..   
T Consensus       327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~-SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g  405 (416)
T PF04710_consen  327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVC-SEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQG  405 (416)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCCCccccCCceeEeeccccceeecCCCCceeeccccccc-chhhhhhhhcCCCCCCcccccccCCcccCcccCCCC
Confidence            47799999862                   3457788999998 66677777652         2679999999964   


Q ss_pred             eeEeee
Q 010920          491 VIRLYT  496 (497)
Q Consensus       491 ~~~~~~  496 (497)
                      ++++++
T Consensus       406 ~vrLiF  411 (416)
T PF04710_consen  406 YVRLIF  411 (416)
T ss_dssp             ------
T ss_pred             ceEEEE
Confidence            566654

; PDB: 3EGB_B 3EGA_A.

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.18  E-value=0.13  Score=50.49  Aligned_cols=54  Identities=22%  Similarity=0.451  Sum_probs=38.4

Q ss_pred             CCcccccccccCCc---eEEeCCCCccchHHHHHHHhcc---Ccccccccccc--cceeEeee
Q 010920          442 SSSSCVICWEAPVE---GACVPCGHMAGCMSCLSEIKAK---KGDCPVCRTKI--NQVIRLYT  496 (497)
Q Consensus       442 ~~~~C~iC~~~~~~---~~~~pC~H~~~C~~C~~~~~~~---~~~Cp~Cr~~i--~~~~~~~~  496 (497)
                      ....|||=.+.-.+   ++.+.|||+. |..-+.++.+.   +-+||+|-...  .+..+||+
T Consensus       333 SvF~CPVlKeqtsdeNPPm~L~CGHVI-SkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql~F  394 (394)
T KOG2817|consen  333 SVFICPVLKEQTSDENPPMMLICGHVI-SKDALNRLSKNGSQSFKCPYCPVEQLASDTKQLYF  394 (394)
T ss_pred             ceeecccchhhccCCCCCeeeecccee-cHHHHHHHhhCCCeeeeCCCCCcccCHHhcccccC
Confidence            34588885443222   5567899999 99999999973   36899996544  55666664

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=90.87  E-value=0.13  Score=57.62  Aligned_cols=52  Identities=23%  Similarity=0.739  Sum_probs=40.9

Q ss_pred             CCCCCcccccccccC---CceEEeCCCCccchHHHHHHHhccC----------cccccccccccce
Q 010920          439 DDGSSSSCVICWEAP---VEGACVPCGHMAGCMSCLSEIKAKK----------GDCPVCRTKINQV  491 (497)
Q Consensus       439 ~~~~~~~C~iC~~~~---~~~~~~pC~H~~~C~~C~~~~~~~~----------~~Cp~Cr~~i~~~  491 (497)
                      ..+.+.+|.||+...   +-++.+-|+|+| -..|..++...+          ..||+|..+|+++
T Consensus      3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiF-HlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIF-HLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred             hcccCceEEEEehhhhCCCcceecCCccch-hHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence            344566999999754   346778999999 899998887642          5699999999765

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=90.66  E-value=0.15  Score=41.86  Aligned_cols=48  Identities=29%  Similarity=0.628  Sum_probs=39.1

Q ss_pred             CcccccccccCCceEEe----CCCCccchHHHHHHHhc---cCcccccccccccce
Q 010920          443 SSSCVICWEAPVEGACV----PCGHMAGCMSCLSEIKA---KKGDCPVCRTKINQV  491 (497)
Q Consensus       443 ~~~C~iC~~~~~~~~~~----pC~H~~~C~~C~~~~~~---~~~~Cp~Cr~~i~~~  491 (497)
                      ..+|.||.|...+.-|+    =||-.. |..|...++.   ....||+|+..+.+.
T Consensus        80 lYeCnIC~etS~ee~FLKPneCCgY~i-Cn~Cya~LWK~~~~ypvCPvCkTSFKss  134 (140)
T PF05290_consen   80 LYECNICKETSAEERFLKPNECCGYSI-CNACYANLWKFCNLYPVCPVCKTSFKSS  134 (140)
T ss_pred             ceeccCcccccchhhcCCcccccchHH-HHHHHHHHHHHcccCCCCCccccccccc
Confidence            45999999998887776    388887 9999888886   458899999988653

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=90.41  E-value=0.13  Score=42.74  Aligned_cols=33  Identities=24%  Similarity=0.533  Sum_probs=27.7

Q ss_pred             CcccccccccCCc---eEEeCCC------CccchHHHHHHHhc
Q 010920          443 SSSCVICWEAPVE---GACVPCG------HMAGCMSCLSEIKA  476 (497)
Q Consensus       443 ~~~C~iC~~~~~~---~~~~pC~------H~~~C~~C~~~~~~  476 (497)
                      ..+|.||++..-+   +|.++|+      |+| |..|..+|.+
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmf-c~~C~~rw~~   67 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMF-CADCDKRWRR   67 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHH-HHHHHHHHHh
Confidence            4599999998765   7778998      777 9999999954

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=88.76  E-value=3.2  Score=36.67  Aligned_cols=130  Identities=17%  Similarity=0.094  Sum_probs=83.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-------ccCCCHHH--
Q 010920           20 LLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP-------AKRGLEPT--   90 (497)
Q Consensus        20 ~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~-------~~~g~~~~--   90 (497)
                      .|..|++.+...+++.+-+...+-   -...++.+-.||...+ .|+|++.-+.   +...+.       ...+..++  
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qk-ydiV~WI~qn---L~i~~~~~iFdIA~~~kDlsLys  121 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQK-YDIVKWIGQN---LHIYNPEDIFDIAFAKKDLSLYS  121 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHcc-ccHHHHHhhc---cCCCCchhhhhhhhhccchhHHH
Confidence            677899999999998876653221   2346788899999844 9999998432   222222       22222222  


Q ss_pred             -HH-HHHhCCCCCcccCC--CCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhh
Q 010920           91 -VR-LLLSCGANALVRND--DCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIP  165 (497)
Q Consensus        91 -v~-~Ll~~ga~~~~~~~--~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~  165 (497)
                       .. ++..+...-...|.  --.--|..|+..|-...+-..+++|.+++  .      ++|- .|+..++.+|+.+++.
T Consensus       122 lGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~--~------~vls-~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  122 LGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD--I------IVLS-QAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc--H------HHHH-HHHHhhHHHHHHHhhc
Confidence             11 12222111000000  00124678999999999999999999887  1      7999 9999999999998875

These proteins may be involved in promoting survival of infected macrophages [].

>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]

Probab=88.75  E-value=0.35  Score=45.62  Aligned_cols=50  Identities=22%  Similarity=0.514  Sum_probs=34.2

Q ss_pred             CCCCcccccccccC-------------------CceEEeCCCCccchHHHHHHHhcc---------Ccccccccccccc
Q 010920          440 DGSSSSCVICWEAP-------------------VEGACVPCGHMAGCMSCLSEIKAK---------KGDCPVCRTKINQ  490 (497)
Q Consensus       440 ~~~~~~C~iC~~~~-------------------~~~~~~pC~H~~~C~~C~~~~~~~---------~~~Cp~Cr~~i~~  490 (497)
                      ...+.+|++|+..-                   .+-.|.||||++ -..=..-|...         ...||.|...+..
T Consensus       338 g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~-sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g  415 (429)
T KOG3842|consen  338 GQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVC-SEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG  415 (429)
T ss_pred             CcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCccccc-chhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence            34567999998742                   345678999996 45555555542         2669999988754

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=88.56  E-value=0.15  Score=37.34  Aligned_cols=28  Identities=29%  Similarity=0.694  Sum_probs=24.1

Q ss_pred             CCCCccchHHHHHHHhcc---Ccccccccccc
Q 010920          460 PCGHMAGCMSCLSEIKAK---KGDCPVCRTKI  488 (497)
Q Consensus       460 pC~H~~~C~~C~~~~~~~---~~~Cp~Cr~~i  488 (497)
                      -|.|.| -..|+.+|...   ...||.||+..
T Consensus        50 ~C~h~f-h~hCI~~wl~~~tsq~~CPmcRq~~   80 (84)
T KOG1493|consen   50 YCLHAF-HAHCILKWLNTPTSQGQCPMCRQTW   80 (84)
T ss_pred             HHHHHH-HHHHHHHHhcCccccccCCcchhee
Confidence            799999 99999999973   37899999854

>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.18  E-value=1.5  Score=41.05  Aligned_cols=32  Identities=28%  Similarity=0.617  Sum_probs=28.5

Q ss_pred             cccccccccCCceEEeCCC----CccchHHHHHHHhc
Q 010920          444 SSCVICWEAPVEGACVPCG----HMAGCMSCLSEIKA  476 (497)
Q Consensus       444 ~~C~iC~~~~~~~~~~pC~----H~~~C~~C~~~~~~  476 (497)
                      ..|.+|.++..|..|+.|-    |-| |+.|......
T Consensus       269 LcCTLC~ERLEDTHFVQCPSVp~HKF-CFPCSResIK  304 (352)
T KOG3579|consen  269 LCCTLCHERLEDTHFVQCPSVPSHKF-CFPCSRESIK  304 (352)
T ss_pred             eeehhhhhhhccCceeecCCCcccce-ecccCHHHHH
Confidence            5899999999999999995    999 9999887665

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=87.13  E-value=0.7  Score=45.63  Aligned_cols=48  Identities=31%  Similarity=0.695  Sum_probs=32.2

Q ss_pred             CCcccccccccCCceEEe-----------------CCCCccc----hHHHHHHHhc-------------cCccccccccc
Q 010920          442 SSSSCVICWEAPVEGACV-----------------PCGHMAG----CMSCLSEIKA-------------KKGDCPVCRTK  487 (497)
Q Consensus       442 ~~~~C~iC~~~~~~~~~~-----------------pC~H~~~----C~~C~~~~~~-------------~~~~Cp~Cr~~  487 (497)
                      +...|.-|+....++.+.                 +|+.-++    |.+|..+|--             .+..||.||++
T Consensus       270 e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~  349 (358)
T PF10272_consen  270 ELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAK  349 (358)
T ss_pred             ccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccc
Confidence            334666688877776665                 2332222    9999988863             25789999998


Q ss_pred             cc
Q 010920          488 IN  489 (497)
Q Consensus       488 i~  489 (497)
                      +.
T Consensus       350 FC  351 (358)
T PF10272_consen  350 FC  351 (358)
T ss_pred             ce
Confidence            64

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=84.53  E-value=0.47  Score=44.58  Aligned_cols=47  Identities=30%  Similarity=0.714  Sum_probs=33.9

Q ss_pred             CCcccccccccCCc---eEEeCCCCccchHHHHHHHhcc-----------------------Cccccccccccc
Q 010920          442 SSSSCVICWEAPVE---GACVPCGHMAGCMSCLSEIKAK-----------------------KGDCPVCRTKIN  489 (497)
Q Consensus       442 ~~~~C~iC~~~~~~---~~~~pC~H~~~C~~C~~~~~~~-----------------------~~~Cp~Cr~~i~  489 (497)
                      -..-|+||+--+++   ...++|-|.+ -..|..+..+.                       ...||+||..|.
T Consensus       114 p~gqCvICLygfa~~~~ft~T~C~Hy~-H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~  186 (368)
T KOG4445|consen  114 PNGQCVICLYGFASSPAFTVTACDHYM-HFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK  186 (368)
T ss_pred             CCCceEEEEEeecCCCceeeehhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence            34578888876654   4567999999 88887665431                       245999998883

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=83.15  E-value=0.51  Score=38.12  Aligned_cols=32  Identities=28%  Similarity=0.631  Sum_probs=24.6

Q ss_pred             CCCCcccccccccCCc--eEEeCCCCccchHHHHH
Q 010920          440 DGSSSSCVICWEAPVE--GACVPCGHMAGCMSCLS  472 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~--~~~~pC~H~~~C~~C~~  472 (497)
                      .++...|.||.....+  .+..||||.+ ...|..
T Consensus        75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~-H~~C~~  108 (109)
T PF10367_consen   75 ITESTKCSVCGKPLGNSVFVVFPCGHVV-HYSCIK  108 (109)
T ss_pred             ECCCCCccCcCCcCCCceEEEeCCCeEE-eccccc
Confidence            3456689999998765  3445999999 888864

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=83.10  E-value=0.68  Score=36.19  Aligned_cols=29  Identities=21%  Similarity=0.473  Sum_probs=25.6

Q ss_pred             EeCCCCccchHHHHHHHhccCccccccccc
Q 010920          458 CVPCGHMAGCMSCLSEIKAKKGDCPVCRTK  487 (497)
Q Consensus       458 ~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~  487 (497)
                      -=-|.|.| -..|+.+|..++..||+|.+.
T Consensus        78 WG~CNHaF-H~hCisrWlktr~vCPLdn~e  106 (114)
T KOG2930|consen   78 WGVCNHAF-HFHCISRWLKTRNVCPLDNKE  106 (114)
T ss_pred             eeecchHH-HHHHHHHHHhhcCcCCCcCcc
Confidence            34799999 999999999998999999764

>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]

Probab=83.07  E-value=4.7  Score=38.35  Aligned_cols=54  Identities=9%  Similarity=-0.100  Sum_probs=42.5

Q ss_pred             CCCCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccceeEe
Q 010920          439 DDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRL  494 (497)
Q Consensus       439 ~~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~  494 (497)
                      ..-...+|.+|-......+..||+|...|.+|+..  .....||.|..-+-..++|
T Consensus       339 ~~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~--s~~~~~~~c~~~~~~~~~i  392 (394)
T KOG2113|consen  339 GLMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASA--SASPTSSTCDHNDHTLVPI  392 (394)
T ss_pred             cchhhcccccccCceeeeEeecCCcccChhhhhhc--ccCCccccccccceeeeec
Confidence            34556799999999999999999999999999883  3346899997655555544

>PHA02862 5L protein; Provisional

Probab=82.84  E-value=1.3  Score=37.11  Aligned_cols=44  Identities=30%  Similarity=0.544  Sum_probs=33.8

Q ss_pred             cccccccccCCceEEeCCCC----ccchHHHHHHHhc--cCcccccccccc
Q 010920          444 SSCVICWEAPVEGACVPCGH----MAGCMSCLSEIKA--KKGDCPVCRTKI  488 (497)
Q Consensus       444 ~~C~iC~~~~~~~~~~pC~H----~~~C~~C~~~~~~--~~~~Cp~Cr~~i  488 (497)
                      ..|=||++.-.+. ..||..    .++-.+|..+|.+  ++..|++|+.+.
T Consensus         3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY   52 (156)
T PHA02862          3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY   52 (156)
T ss_pred             CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence            4899999886544 469884    2347899999997  457899999765

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=82.82  E-value=2.7  Score=31.52  Aligned_cols=47  Identities=21%  Similarity=0.142  Sum_probs=36.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHc
Q 010920           19 ELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL   73 (497)
Q Consensus        19 T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~   73 (497)
                      .-|.+|+..|+.++++.+++.+ .++      ...|..|+.. .+-+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~-H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKS-HNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHH-hhHHHHHHHHHh
Confidence            4679999999999999999765 221      4669999987 667888888765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=82.03  E-value=0.69  Score=43.34  Aligned_cols=42  Identities=24%  Similarity=0.554  Sum_probs=34.2

Q ss_pred             cccccccccCCceEEe-CCCCccchHHHHHHHhc-cCcccccccc
Q 010920          444 SSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKA-KKGDCPVCRT  486 (497)
Q Consensus       444 ~~C~iC~~~~~~~~~~-pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~  486 (497)
                      ..|+.|.-...+++-+ -|+|.| |.+|+..-.. .-.+||.|..
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~f-c~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTF-CDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhhhCcccCccccchH-HHHHHhhhhhhccccCCCccc
Confidence            5899999988888877 467999 9999986554 4468999975

>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]

Probab=81.48  E-value=0.98  Score=43.28  Aligned_cols=43  Identities=26%  Similarity=0.585  Sum_probs=27.9

Q ss_pred             CCCCcccccccccCCceEEeCCCCccchHHHHHHHhc---------------------cCcccccccc
Q 010920          440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA---------------------KKGDCPVCRT  486 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~---------------------~~~~Cp~Cr~  486 (497)
                      .+...+|+||-|.+.-..+   |-. +|.+|---+++                     +++.||.||=
T Consensus        12 edl~ElCPVCGDkVSGYHY---GLL-TCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRF   75 (475)
T KOG4218|consen   12 EDLGELCPVCGDKVSGYHY---GLL-TCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRF   75 (475)
T ss_pred             cccccccccccCcccccee---eee-ehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhH
Confidence            4455699999999886443   222 26666544443                     1478999984

>PHA03096 p28-like protein; Provisional

Probab=80.67  E-value=0.99  Score=43.27  Aligned_cols=44  Identities=23%  Similarity=0.239  Sum_probs=31.7

Q ss_pred             cccccccccCC--------ceEEeCCCCccchHHHHHHHhcc---C---cccccccccc
Q 010920          444 SSCVICWEAPV--------EGACVPCGHMAGCMSCLSEIKAK---K---GDCPVCRTKI  488 (497)
Q Consensus       444 ~~C~iC~~~~~--------~~~~~pC~H~~~C~~C~~~~~~~---~---~~Cp~Cr~~i  488 (497)
                      ..|.||++...        ..++-.|.|.| |..|+..|...   +   ..||.|+..+
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~f-c~~ci~~wr~~~~~~e~~~~c~~~~~~~  236 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEF-NIFCIKIWMTESLYKETEPENRRLNTVI  236 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHH-HHHHHHHHHHhhhhcccCccccchhhHH
Confidence            48999998643        35566899999 99999999863   2   3455555433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	497
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-08
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-08
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		4e-08
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		6e-08
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-08
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-07
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		5e-07
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-06
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-06
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		4e-06
2yhn_A	79	The Idol-Ube2d Complex Mediates Sterol-Dependent De		4e-05
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		5e-05
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		7e-05
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-04
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-04
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-04
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-04
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-04
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-04
2hdp_A	63	Solution Structure Of Hdm2 Ring Finger Domain Lengt		2e-04
2vje_A	64	Crystal Structure Of The Mdm2-Mdmx Ring Domain Hete		2e-04
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-04
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		4e-04
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-04
3eb5_A	74	Structure Of The Ciap2 Ring Domain Length = 74		6e-04
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		7e-04
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		7e-04
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		7e-04
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		8e-04
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		8e-04

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 10/110 (9%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-----YR 81
           AG  D +R L + GA +   DK+G TPL +A  + G + + + L++ GA++NA     Y 
Sbjct: 12  AGQDDEVRILMANGADVNAKDKDGYTPLHLAARE-GHLEIVEVLLKAGADVNAKDKDGYT 70
Query: 82  P----AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
           P    A+ G    V +LL  GA+   ++ D +T L +A  +GH+ +V  +
Sbjct: 71  PLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 10/110 (9%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-----YR 81
           AG  D +R L + GA +   DK+G TPL +A  + G + + + L++ GA++NA     Y 
Sbjct: 12  AGQDDEVRILMANGADVNAKDKDGYTPLHLAARE-GHLEIVEVLLKAGADVNAKDKDGYT 70
Query: 82  P----AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
           P    A+ G    V +LL  GA+   ++ D +T L +A  +GH+ +V  +
Sbjct: 71  PLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 10/116 (8%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
           L +   AG  D +R L + GA +   DK+G TPL +A  + G + + + L++ GA++NA 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAARE-GHLEIVEVLLKAGADVNAK 76
Query: 80  ----YRP----AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
               Y P    A+ G    V +LL  GA+   ++ D +T L +A  +GH+ +V  +
Sbjct: 77  DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 132

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 10/109 (9%)
Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           G ++ ++ L   GA +   DK G+TPL +A  + G + V K L+E GA++NA        
Sbjct: 13  GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAKDKNGRTP 71
Query: 80  -YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
            +  A+ G    V+LLL  GA+   ++ +  T L +A   GH+ VV+ +
Sbjct: 72  LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 14/127 (11%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
           L+     G  + ++ L S+GA +   D +G+TPL  A  + G   + K LI  GA++NA 
Sbjct: 41  LHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKE-GHKEIVKLLISKGADVNAK 99
Query: 80  --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI 131
                   +  AK G +  V+LL+S GA+    + D  T L +AR  G+  +V+ +E   
Sbjct: 100 DSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQ- 158
Query: 132 CYFCGWL 138
               GWL
Sbjct: 159 ---GGWL 162

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 63/128 (49%), Gaps = 14/128 (10%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
           L+     G  + ++ L SQGA     D +GKTPL +A  ++G   V K L+  GA+ NA 
Sbjct: 41  LHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAA-ENGHKEVVKLLLSQGADPNAK 99
Query: 80  --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI 131
                   +  A+ G +  V+LLLS GA+    + D  T L +AR  G+  VV+ +E   
Sbjct: 100 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQ- 158
Query: 132 CYFCGWLR 139
               GWL 
Sbjct: 159 ---GGWLE 163

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
           L +   AG  D +R L + GA +   D +G TPL +A   +G + + + L++ GA++NA 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAA-SNGHLEIVEVLLKNGADVNAS 76
Query: 80  --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
                   +  A  G    V +LL  GA+    ++D HT L +A   GH+ +V  +  H
Sbjct: 77  DLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKH 135

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 10/116 (8%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
           L +    G+ D ++ L   GA +   D +G+TPL  A  ++G   V K LI  GA++NA 
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAA-ENGHKEVVKLLISKGADVNAK 66
Query: 80  --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
                   +  A+ G +  V+LL+S GA+   ++ D  T L  A   GH  VV+ +
Sbjct: 67  DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 122

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 14/127 (11%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
           L+     G  + ++ L S+GA     D +G+TPL  A  ++G   + K L+  GA+ NA 
Sbjct: 41  LHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAA-ENGHKEIVKLLLSKGADPNAK 99
Query: 80  --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI 131
                   +  A+ G +  V+LLLS GA+    + D  T L +AR  G+  +V+ +E   
Sbjct: 100 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQ- 158
Query: 132 CYFCGWL 138
               GWL
Sbjct: 159 ---GGWL 162

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 64/107 (59%), Gaps = 15/107 (14%)
Query: 31  DAIRALRSQGASLEWMD-KEGKTPLIVACMDSGLINVAKTLIELGANINA---------Y 80
           + ++ L  +GA ++ +D K G++PLI A  ++ L ++ + L++ GAN+NA         +
Sbjct: 130 ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL-SMVQLLLQHGANVNAQMYSGSSALH 188
Query: 81  RPAKRGLEPTVRLLLSCGANALVRNDDCH--TALGVARIKGHINVVR 125
             + RGL P VR L+  GA++ ++N  CH  T L VAR +  I+++R
Sbjct: 189 SASGRGLLPLVRTLVRSGADSSLKN--CHNDTPLMVARSRRVIDILR 233

>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 79

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 446 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 495
           C++C E  +     PCGH   C SC +++++    CPVCR+++  V  +Y
Sbjct: 21  CMVCCEEEINSTFCPCGHTVCCESCAAQLQS----CPVCRSRVEHVQHVY 66

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA------- 79
           AG  D +R L + GA +   D  G TPL +A   +G + + + L++ GA++NA       
Sbjct: 24  AGQDDEVRILMANGADVNATDWLGHTPLHLAAK-TGHLEIVEVLLKYGADVNAWDNYGAT 82
Query: 80  --YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
             +  A  G    V +LL  GA+   ++ +  T L +A   GH+ +V  +
Sbjct: 83  PLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVL 132

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 14/118 (11%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
           L +   AG  D +R L + GA +   D  G TPL +A    G + + + L++ GA++NA 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAAR-VGHLEIVEVLLKNGADVNAL 76
Query: 80  --------YRPAKRGLEPTVRLLLSCGANALVRNDDC--HTALGVARIKGHINVVRAI 127
                   +  AKRG    V +LL  GA+  V  DD    T L +A   GH+ +V  +
Sbjct: 77  DFSGSTPLHLAAKRGHLEIVEVLLKYGAD--VNADDTIGSTPLHLAADTGHLEIVEVL 132

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 14/118 (11%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L +   AG  D +R L + GA +   D  G TPL +A   +G + + + L++ GA++NA 
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAF-NGHLEIVEVLLKNGADVNAV 76
Query: 81  RPAKRGLEP-----------TVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
             A  G+ P            V +LL  GA+    + + HT L +A + GH+ +V  +
Sbjct: 77  DHA--GMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL 132

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINA---------YRPAKRGLEPTVRLLLSCGAN 100
           G+TPL +A  + G + V K L+E GA++NA         +  A+ G    V+LLL  GA+
Sbjct: 2   GRTPLHLAARN-GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 101 ALVRNDDCHTALGVARIKGHINVVRAI 127
              ++ +  T L +A   GH+ VV+ +
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLL 87

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 10/119 (8%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
           L +   AG  D +R L + GA +   D  G TPL +A    G + + + L++ GA++NA 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAY-FGHLEIVEVLLKNGADVNAD 76
Query: 80  --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
                   +  A RG    V +LL  GA+    + +  T L +A   GH+ +V  +  H
Sbjct: 77  DSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKH 135

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 10/116 (8%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
           L +   AG  D +R L + GA +   D  GKTPL +A +  G + + + L++ GA++NA 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAI-KGHLEIVEVLLKHGADVNAA 76
Query: 80  --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
                   +  A  G    V +LL  GA+    +    T L +A   GH+ +V  +
Sbjct: 77  DKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVL 132

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
           L +   AG  D +R L + GA +   D  G TPL +A    G + + + L++ GA++NA 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAH-FGHLEIVEVLLKNGADVNAK 76
Query: 80  --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
                   +  A+RG    V +LL  GA+    +    T L +A  +GH+ +V  +
Sbjct: 77  DSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVL 132

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYR----- 81
           AG  D +R L + GA +   D  G TPL +A    G + + + L++ GA++NAY      
Sbjct: 24  AGRDDEVRILMANGADVNAADVVGWTPLHLAAY-WGHLEIVEVLLKNGADVNAYDTLGST 82
Query: 82  ----PAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
                A  G    V +LL  GA+   ++D+  T L +A  +GH+ +V  +
Sbjct: 83  PLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVL 132

>pdb|2HDP|A Chain A, Solution Structure Of Hdm2 Ring Finger Domain Length = 63

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 446 CVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 495
           CVIC   P  G  V    GH+  C +C  ++K +   CPVCR  I  ++  Y
Sbjct: 10  CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 61

>pdb|2VJE|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer Length = 64

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 446 CVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 495
           CVIC   P  G  V    GH+  C +C  ++K +   CPVCR  I  ++  Y
Sbjct: 11  CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA------- 79
           AG  D +R L + GA     D  G+TPL +A    G + + + L+  GA++NA       
Sbjct: 12  AGQDDEVRILMANGADANAYDHYGRTPLHMAAA-VGHLEIVEVLLRNGADVNAVDTNGTT 70
Query: 80  --YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
             +  A  G    V +LL  GA+   ++    T L +A   GH+ +V  +  H
Sbjct: 71  PLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKH 123

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
           L +   AG  D +R L + GA +  +D  G TPL +A + SG + + + L++ GA+++A 
Sbjct: 18  LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAV-SGHLEIVEVLLKHGADVDAA 76
Query: 80  --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
                   +  A  G    V +LL  GA+    +    T L +A  +GH+ +V  +
Sbjct: 77  DVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVL 132

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 10/119 (8%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
           L +   AG  D +R L + GA +   D +G TPL +A    G   + + L++ GA++NA 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAW-IGHPEIVEVLLKHGADVNAR 76
Query: 80  --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
                   +  A  G    V +LL  GA+   ++    T L +A  +GH+ +V  +  H
Sbjct: 77  DTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKH 135

>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain Length = 74

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 445 SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 495
           +C +C +  V    +PCGH+  C  C   ++     CP+CR+ I   +R +
Sbjct: 26  TCKVCMDKEVSIVFIPCGHLVVCKDCAPSLR----KCPICRSTIKGTVRTF 72

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY-----RP 82
           G +  +  L   GA  + + K  ++ L +AC   G  ++ K L++ G ++N Y      P
Sbjct: 63  GQIAVVEFLLQNGADPQLLGKGRESALSLAC-SKGYTDIVKMLLDCGVDVNEYDWNGGTP 121
Query: 83  AKRGLEPT----VRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWL 138
               +       V++LL  GA+  +  D  + ++ +A   G+ +V + IESH+      +
Sbjct: 122 LLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNI 181
Query: 139 RE 140
           +E
Sbjct: 182 KE 183

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
           L +   AG  D +R L + GA +   D  G TPL +A    G + + + L++ GA++NA 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAAT-YGHLEIVEVLLKHGADVNAI 76
Query: 80  --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
                   +  A  G    V +LL  GA+    +    T L +A I GH+ +V  +  H
Sbjct: 77  DIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
          AG  D +R L + GA +   DK G TPL +A  + G + V K L+E GA++NA
Sbjct: 16 AGQDDEVRILMANGADVAAKDKNGSTPLHLAARN-GHLEVVKLLLEAGADVNA 67

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
           L +   AG  D +R L + GA +   D  G TPL +A    G + + + L++ GA++NA 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAAT-YGHLEIVEVLLKHGADVNAI 76
Query: 80  --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
                   +  A  G    V +LL  GA+    +    T L +A I GH+ +V  +  H
Sbjct: 77  DIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY-----RP 82
           G +  +  L   GA  + + K  ++ L +AC   G  ++ K L++ G ++N Y      P
Sbjct: 47  GQIAVVEFLLQNGADPQLLGKGRESALSLAC-SKGYTDIVKMLLDCGVDVNEYDWNGGTP 105
Query: 83  AKRGLEPT----VRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWL 138
               +       V++LL  GA+  +  D  + ++ +A   G+ +V + IESH+      +
Sbjct: 106 LLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNI 165
Query: 139 RE 140
           +E
Sbjct: 166 KE 167

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	497
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-19
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-18
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-09
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-06
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-18
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-15
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-09
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	9e-18
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-17
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-11
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-06
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	1e-17
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-17
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-08
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-17
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-12
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-11
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	3e-17
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-17
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-15
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-13
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-17
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-16
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-15
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-14
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-12
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-12
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-08
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-16
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-16
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-13
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-13
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-13
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-09
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-16
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-15
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-16
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-16
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-04
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	8e-16
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-15
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-15
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-12
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-15
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-14
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-12
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-15
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-14
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-11
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-15
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-15
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-10
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-10
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-08
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-15
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-14
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-14
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-14
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-12
2ea5_A	68	Cell growth regulator with ring finger domain prot	1e-14
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	1e-14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	8e-11
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-14
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-13
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-10
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-14
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-08
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-14
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-12
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-11
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-11
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-13
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-13
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	9e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-13
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-13
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-13
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-10
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-08
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-13
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-08
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-08
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-12
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-12
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-11
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-11
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-11
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-07
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	1e-10
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-10
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-09
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-06
2etb_A	256	Transient receptor potential cation channel subfam	2e-09
2etb_A	256	Transient receptor potential cation channel subfam	9e-08
2etb_A	256	Transient receptor potential cation channel subfam	8e-07
2etb_A	256	Transient receptor potential cation channel subfam	1e-05
2rfa_A	232	Transient receptor potential cation channel subfa	2e-09
2rfa_A	232	Transient receptor potential cation channel subfa	1e-08
2rfa_A	232	Transient receptor potential cation channel subfa	6e-08
2rfa_A	232	Transient receptor potential cation channel subfa	2e-05
2rfa_A	232	Transient receptor potential cation channel subfa	5e-05
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	3e-09
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	8e-09
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	3e-08
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	5e-08
2pnn_A	273	Transient receptor potential cation channel subfa	5e-08
2pnn_A	273	Transient receptor potential cation channel subfa	1e-06
2pnn_A	273	Transient receptor potential cation channel subfa	1e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-06
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	1e-07
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	2e-07
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	7e-07
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	1e-06
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	1e-06
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	5e-06
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	5e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-05
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	5e-05
1z6u_A	150	NP95-like ring finger protein isoform B; structura	1e-04
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	1e-04
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	1e-04
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	1e-04
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	1e-04
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	3e-04
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	3e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-04
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	6e-04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	7e-04
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	8e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	9e-04

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 82.5 bits (205), Expect = 4e-19
 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 10/112 (8%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           GD+ ++  L   G+     D  G TPL  AC   G + V + L++  A +N         
Sbjct: 21  GDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNH-GHLKVVELLLQHKALVNTTGYQNDSP 79

Query: 80  -YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
            +  AK G    V+LLLS GA+    N      +     +   +++   E +
Sbjct: 80  LHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN 131

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 40.1 bits (95), Expect = 2e-04
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 25/79 (31%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRND 106
           +  G+T L +A                         + +G  P+V  LL  G++  V++ 
Sbjct: 7   NHRGETLLHIA-------------------------SIKGDIPSVEYLLQNGSDPNVKDH 41

Query: 107 DCHTALGVARIKGHINVVR 125
              T L  A   GH+ VV 
Sbjct: 42  AGWTPLHEACNHGHLKVVE 60

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 79.4 bits (197), Expect = 6e-18
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 12/113 (10%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           G V+ +R L   GA    +++ G+ P+ V  M  G   VA+ L+  GA  N         
Sbjct: 23  GQVETVRQLLEAGADPNALNRFGRRPIQVMMM--GSAQVAELLLLHGAEPNCADPATLTR 80

Query: 80  --YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
             +  A+ G   T+ +L   GA   V +      + +A  +GH ++ R + + 
Sbjct: 81  PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 54.0 bits (131), Expect = 4e-09
 Identities = 15/83 (18%), Positives = 24/83 (28%), Gaps = 11/83 (13%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKT-PLIVACMDSGLINVAKTLIELGANINA------- 79
           G       L   GA     D    T P+  A    G ++    L   GA ++        
Sbjct: 55  GSAQVAELLLLHGAEPNCADPATLTRPVHDAAR-EGFLDTLVVLHRAGARLDVCDAWGRL 113

Query: 80  --YRPAKRGLEPTVRLLLSCGAN 100
                 ++G     R L +   +
Sbjct: 114 PVDLAEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 45.9 bits (110), Expect = 2e-06
 Identities = 17/91 (18%), Positives = 23/91 (25%), Gaps = 26/91 (28%)

Query: 40  GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGA 99
              +  +       L  A                         A RG   TVR LL  GA
Sbjct: 2   SPGIHMLGGSSDAGLATA-------------------------AARGQVETVRQLLEAGA 36

Query: 100 NALVRNDDCHTALGVARIKGHINVVRAIESH 130
           +    N      + V  + G   V   +  H
Sbjct: 37  DPNALNRFGRRPIQVM-MMGSAQVAELLLLH 66

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 80.2 bits (199), Expect = 7e-18
 Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 10/112 (8%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           G+++ +R L   GA    + KE ++ L +A    G  ++   L+E   +IN         
Sbjct: 47  GEIETVRFLLEWGADPHILAKERESALSLASTG-GYTDIVGLLLERDVDINIYDWNGGTP 105

Query: 80  -YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
                +      V  LL+ GA+     D  +T + +A   G+  V + IE+H
Sbjct: 106 LLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 73.6 bits (182), Expect = 1e-15
 Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 11/108 (10%)

Query: 28  GDVDAIRALRSQGASLE-WMDKEGKTPLIVACMDSGLINVAKTLIELGANINA------- 79
           G++D ++    +G +L    D+ G TPLI A    G I   + L+E GA+ +        
Sbjct: 13  GELDQLKEHLRKGDNLVNKPDERGFTPLIWASAF-GEIETVRFLLEWGADPHILAKERES 71

Query: 80  --YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 125
                +  G    V LLL    +  + + +  T L  A    H+  V 
Sbjct: 72  ALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVE 119

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 54.0 bits (131), Expect = 7e-09
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 11/86 (12%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGAN-INA-----YRP----AKRGLEPTVRLLLSCGA 99
               +       G ++  K  +  G N +N      + P    +  G   TVR LL  GA
Sbjct: 2   DSLSIHQLAA-QGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60

Query: 100 NALVRNDDCHTALGVARIKGHINVVR 125
           +  +   +  +AL +A   G+ ++V 
Sbjct: 61  DPHILAKERESALSLASTGGYTDIVG 86

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 49.7 bits (120), Expect = 2e-07
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
             V  + AL ++GA L      G TP+ +A    G   V + +      +  
Sbjct: 113 NHVKCVEALLARGADLTTEADSGYTPMDLAVA-LGYRKVQQVIENHILKLFQ 163

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 79.7 bits (198), Expect = 9e-18
 Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 10/112 (8%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           G +  +  L   GA  + + K  ++ L +AC   G  ++ K L++ G ++N         
Sbjct: 47  GQIAVVEFLLQNGADPQLLGKGRESALSLACS-KGYTDIVKMLLDCGVDVNEYDWNGGTP 105

Query: 80  -YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
                       V++LL  GA+  +  D  + ++ +A   G+ +V + IESH
Sbjct: 106 LLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 78.6 bits (195), Expect = 2e-17
 Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 10/107 (9%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           G++  +     Q   +   D+EG TPL+ A    G I V + L++ GA+           
Sbjct: 14  GEMLYLATRIEQENVINHTDEEGFTPLMWAAA-HGQIAVVEFLLQNGADPQLLGKGRESA 72

Query: 80  -YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 125
                 +G    V++LL CG +    + +  T L  A    H+  V+
Sbjct: 73  LSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVK 119

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 60.5 bits (148), Expect = 4e-11
 Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 10/85 (11%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINA---------YRPAKRGLEPTVRLLLSCGAN 100
               +       G +    T IE    IN             A  G    V  LL  GA+
Sbjct: 3   NSLSVHQLAA-QGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 101 ALVRNDDCHTALGVARIKGHINVVR 125
             +      +AL +A  KG+ ++V+
Sbjct: 62  PQLLGKGRESALSLACSKGYTDIVK 86

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 1/52 (1%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
             V  ++ L   GA        G   + +A    G  +V + +      +  
Sbjct: 113 NHVKCVKMLLESGADPTIETDSGYNSMDLAVAL-GYRSVQQVIESHLLKLLQ 163

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64

 Score = 76.0 bits (187), Expect = 1e-17
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 438 KDDGSSSSCVICWEAPVEGACVP--CGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 495
               +   CVIC   P  G  V    GH+  C +C  ++K +   CPVCR  I  ++  Y
Sbjct: 3   LPLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 78.7 bits (195), Expect = 2e-17
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 12/113 (10%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           G V+ +RAL   GA+    +  G+ P+ V  M  G   VA+ L+  GA  N         
Sbjct: 23  GRVEEVRALLEAGANPNAPNSYGRRPIQVMMM--GSARVAELLLLHGAEPNCADPATLTR 80

Query: 80  --YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
             +  A+ G   T+ +L   GA   VR+      + +A   GH +V R + + 
Sbjct: 81  PVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA 133

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 52.1 bits (126), Expect = 3e-08
 Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 30/97 (30%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGL 87
           G +D +  L   GA L+  D  G+ P+ +A  + G  +VA+ L                 
Sbjct: 89  GFLDTLVVLHRAGARLDVRDAWGRLPVDLAE-ELGHRDVARYLRAAAGGTRGS------- 140

Query: 88  EPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 124
                                     +   +G  ++ 
Sbjct: 141 ----------------------NHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 17/84 (20%), Positives = 21/84 (25%), Gaps = 26/84 (30%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRND 106
            +     L  A                         A RG    VR LL  GAN    N 
Sbjct: 9   MEPSADWLATA-------------------------AARGRVEEVRALLEAGANPNAPNS 43

Query: 107 DCHTALGVARIKGHINVVRAIESH 130
                + V  + G   V   +  H
Sbjct: 44  YGRRPIQVM-MMGSARVAELLLLH 66

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 77.4 bits (192), Expect = 2e-17
 Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 10/107 (9%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           G ++ ++ L   GA +   DK G+TPL +A  + G + V K L+E GA++NA        
Sbjct: 13  GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAKDKNGRTP 71

Query: 80  -YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 125
            +  A+ G    V+LLL  GA+   ++ +  T L +A   GH+ VV+
Sbjct: 72  LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 118

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 62.7 bits (154), Expect = 2e-12
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINA---------YRPAKRGLEPTVRLLLSCGAN 100
           G+TPL +A   +G + V K L+E GA++NA         +  A+ G    V+LLL  GA+
Sbjct: 2   GRTPLHLAA-RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 101 ALVRNDDCHTALGVARIKGHINVVRAIESH 130
              ++ +  T L +A   GH+ VV+ +   
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 60.1 bits (147), Expect = 2e-11
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 10/81 (12%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           G ++ ++ L   GA +   DK G+TPL +A   +G + V K L+E GA++NA        
Sbjct: 46  GHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR-NGHLEVVKLLLEAGADVNAKDKNGRTP 104

Query: 80  -YRPAKRGLEPTVRLLLSCGA 99
            +  A+ G    V+LLL  GA
Sbjct: 105 LHLAARNGHLEVVKLLLEAGA 125

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 74.9 bits (184), Expect = 3e-17
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 446 CVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT 496
           C +C + P +G  +    GH+  C  C   +K     CP+C+ +I  VI+++ 
Sbjct: 10  CSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFI 62

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 80.2 bits (199), Expect = 3e-17
 Identities = 23/113 (20%), Positives = 50/113 (44%), Gaps = 10/113 (8%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           G    +  L ++G  ++ MD+ G TPL+ A   +  ++  + L+    ++N         
Sbjct: 120 GHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNT 179

Query: 80  --YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
             +     G    + LLL  GAN   +N    +AL +A+ + ++ ++  ++  
Sbjct: 180 ALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 74.8 bits (185), Expect = 2e-15
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 11/108 (10%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA------YR 81
           G  +  R L   G  +   DKE  T L  A + +  I++ K  I  GA ++         
Sbjct: 20  GIYERCRELVEAGYDVRQPDKENVTLLHWAAI-NNRIDLVKYYISKGAIVDQLGGDLNST 78

Query: 82  P----AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 125
           P     ++G    V  L+  GA+  + + +  + + +A   GH ++V 
Sbjct: 79  PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVA 126

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 67.1 bits (165), Expect = 9e-13
 Identities = 22/114 (19%), Positives = 50/114 (43%), Gaps = 12/114 (10%)

Query: 28  GDVDAIRALRSQGASLEWMDKE-GKTPLIVACMDSGLINVAKTLIELGANINA------- 79
             +D ++   S+GA ++ +  +   TPL  A    G +++   L++ GA+ +        
Sbjct: 53  NRIDLVKYYISKGAIVDQLGGDLNSTPLHWAT-RQGHLSMVVQLMKYGADPSLIDGEGCS 111

Query: 80  --YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH-INVVRAIESH 130
             +  A+ G    V  L++ G +  + + +  T L  A  + H ++  R + + 
Sbjct: 112 CIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF 165

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 47.0 bits (113), Expect = 4e-06
 Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
           G+   I  L   GA+++  + +G++ L +A      + +   L E       
Sbjct: 188 GNTTVISLLLEAGANVDAQNIKGESALDLAKQ-RKNVWMINHLQEARQAKGY 238

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 44.0 bits (105), Expect = 4e-05
 Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 25/80 (31%)

Query: 46  MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRN 105
           +D      ++ A                          + G+    R L+  G +    +
Sbjct: 5   IDDYSTWDIVKA-------------------------TQYGIYERCRELVEAGYDVRQPD 39

Query: 106 DDCHTALGVARIKGHINVVR 125
            +  T L  A I   I++V+
Sbjct: 40  KENVTLLHWAAINNRIDLVK 59

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 75.5 bits (187), Expect = 7e-17
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 10/107 (9%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           GD+D ++   ++G  +    + G+ PL  A  D G + + + L+  GA+INA        
Sbjct: 18  GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAA-DCGQLEILEFLLLKGADINAPDKHHITP 76

Query: 80  -YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 125
                  G    V+LLLS GA+  V+  D  TA      +    +++
Sbjct: 77  LLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 38.9 bits (92), Expect = 6e-04
 Identities = 8/80 (10%), Positives = 18/80 (22%), Gaps = 25/80 (31%)

Query: 46  MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRN 105
           +        + A                          K G    V+  ++ G +     
Sbjct: 3   LGSMCDKEFMWA-------------------------LKNGDLDEVKDYVAKGEDVNRTL 37

Query: 106 DDCHTALGVARIKGHINVVR 125
           +     L  A   G + ++ 
Sbjct: 38  EGGRKPLHYAADCGQLEILE 57

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 80.6 bits (200), Expect = 1e-16
 Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 10/107 (9%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-----YRP 82
           G V     L   G  ++   + G TPL VA    G I + K L++  A++NA     Y P
Sbjct: 289 GHVPVADVLIKHGVMVDATTRMGYTPLHVAS-HYGNIKLVKFLLQHQADVNAKTKLGYSP 347

Query: 83  ----AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 125
               A++G    V LLL  GA+    + D  T L +A+  G+I+V  
Sbjct: 348 LHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTD 394

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 80.2 bits (199), Expect = 2e-16
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 10/107 (9%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           G +  ++ L  +GAS    + + +TPL +A   +G   VAK L++  A +NA        
Sbjct: 25  GHLPIVKNLLQRGASPNVSNVKVETPLHMAAR-AGHTEVAKYLLQNKAKVNAKAKDDQTP 83

Query: 80  -YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 125
            +  A+ G    V+LLL   AN  +     HT L +A  +GH+  V 
Sbjct: 84  LHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL 130

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 79.5 bits (197), Expect = 4e-16
 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 10/107 (9%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-----YRP 82
           G  + ++ L    A+       G TPL +A    G +     L+E  A+        + P
Sbjct: 91  GHTNMVKLLLENNANPNLATTAGHTPLHIAAR-EGHVETVLALLEKEASQACMTKKGFTP 149

Query: 83  ----AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 125
               AK G      LLL   A+      +  T L VA    ++++V+
Sbjct: 150 LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK 196

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 79.5 bits (197), Expect = 4e-16
 Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 10/107 (9%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-----YRP 82
           G V+ + AL  + AS   M K+G TPL VA    G + VA+ L+E  A+ NA       P
Sbjct: 124 GHVETVLALLEKEASQACMTKKGFTPLHVAAK-YGKVRVAELLLERDAHPNAAGKNGLTP 182

Query: 83  ----AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 125
                       V+LLL  G +      + +T L +A  +  + V R
Sbjct: 183 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVAR 229

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 79.5 bits (197), Expect = 4e-16
 Identities = 30/110 (27%), Positives = 41/110 (37%), Gaps = 10/110 (9%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA----- 79
             AG  +  + L    A +    K+ +TPL  A    G  N+ K L+E  AN N      
Sbjct: 55  ARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAAR-IGHTNMVKLLLENNANPNLATTAG 113

Query: 80  ----YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 125
               +  A+ G   TV  LL   A+         T L VA   G + V  
Sbjct: 114 HTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAE 163

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 78.7 bits (195), Expect = 7e-16
 Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 10/102 (9%)

Query: 38  SQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA---------YRPAKRGLE 88
           S G S     + G TPL VA    G + + K L++ GA+ N          +  A+ G  
Sbjct: 2   SPGISGGGGGESGLTPLHVASF-MGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHT 60

Query: 89  PTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
              + LL   A    +  D  T L  A   GH N+V+ +  +
Sbjct: 61  EVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN 102

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 77.5 bits (192), Expect = 1e-15
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 10/112 (8%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-----YRP 82
            ++D ++ L  +G S       G TPL +A      + VA++L++ G + NA       P
Sbjct: 190 NNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAK-QNQVEVARSLLQYGGSANAESVQGVTP 248

Query: 83  ----AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
               A+ G    V LLLS  AN  + N    T L +   +GH+ V   +  H
Sbjct: 249 LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH 300

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 75.6 bits (187), Expect = 6e-15
 Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 10/107 (9%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
             V+  R+L   G S      +G TPL +A    G   +   L+   AN N         
Sbjct: 223 NQVEVARSLLQYGGSANAESVQGVTPLHLAAQ-EGHAEMVALLLSKQANGNLGNKSGLTP 281

Query: 80  -YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 125
            +  A+ G  P   +L+  G          +T L VA   G+I +V+
Sbjct: 282 LHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVK 328

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 54.0 bits (131), Expect = 6e-08
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 4/76 (5%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL---GANINAYRPAK 84
           G  D +  L   GAS   +  +G TPL +A    G I+V   L  +    + +      +
Sbjct: 355 GHTDIVTLLLKNGASPNEVSSDGTTPLAIAK-RLGYISVTDVLKVVTDETSFVLVSDKHR 413

Query: 85  RGLEPTVRLLLSCGAN 100
                TV  +L    +
Sbjct: 414 MSFPETVDEILDVSED 429

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 76.3 bits (189), Expect = 2e-16
 Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 10/112 (8%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           G    +  L  +GA +  M++   TPL +A    G  ++ + L++  A+INA        
Sbjct: 50  GRSAVVEMLIMRGARINVMNRGDDTPLHLAAS-HGHRDIVQKLLQYKADINAVNEHGNVP 108

Query: 80  -YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
            +     G +     L++ GA   + N      +  A+      +    E  
Sbjct: 109 LHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKM 160

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 74.0 bits (183), Expect = 1e-15
 Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 11/120 (9%)

Query: 21  LYQWVIAGDVDAIRALRSQGAS-LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
           ++     G+  A+R       + L   D  G +PL  AC   G   V + LI  GA IN 
Sbjct: 9   IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACR-EGRSAVVEMLIMRGARINV 67

Query: 80  ---------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
                    +  A  G    V+ LL   A+    N+  +  L  A   G   V   + ++
Sbjct: 68  MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN 127

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 59.4 bits (145), Expect = 1e-10
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 11/89 (12%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGAN-INA-----YRP----AKRGLEPTVRLLLS 96
             E    +   C   G     +  ++   N +N      + P     + G    V +L+ 
Sbjct: 2   SPEFMDDIFTQCR-EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM 60

Query: 97  CGANALVRNDDCHTALGVARIKGHINVVR 125
            GA   V N    T L +A   GH ++V+
Sbjct: 61  RGARINVMNRGDDTPLHLAASHGHRDIVQ 89

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 48.6 bits (117), Expect = 7e-07
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
           G       L + GA +   +K G+ P+  A        + +   ++G N+N 
Sbjct: 116 GQDQVAEDLVANGALVSICNKYGEMPVDKAK-APLRELLRERAEKMGQNLNR 166

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 77.1 bits (191), Expect = 3e-16
 Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 10/112 (8%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
             VD ++ L S+G+ +   D E    L  A   SG +++A+ L+    +++A        
Sbjct: 122 KHVDLVKLLLSKGSDINIRDNEENICLHWAAF-SGCVDIAEILLAAKCDLHAVNIHGDSP 180

Query: 80  -YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
            +  A+      V L LS  ++  ++N +  T L  A +   +     +   
Sbjct: 181 LHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKA 232

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 69.0 bits (170), Expect = 2e-13
 Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 11/113 (9%)

Query: 28  GDVDAIRALRSQGAS-LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-----YR 81
           G  + ++ L S G   +   D  G TP+I A  +   +++ K L+  G++IN        
Sbjct: 88  GHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT-EYKHVDLVKLLLSKGSDINIRDNEENI 146

Query: 82  P----AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
                A  G      +LL+   +    N    + L +A  +   + V    S 
Sbjct: 147 CLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR 199

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 69.0 bits (170), Expect = 2e-13
 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 15/115 (13%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           G VD    L   GA+++   ++ +TPL+ A   +  +   K LI+ GA ++         
Sbjct: 22  GHVDICHMLVQAGANIDTCSEDQRTPLMEAAE-NNHLEAVKYLIKAGALVDPKDAEGSTC 80

Query: 80  -YRPAKRGLEPTVRLLLSCGA---NALVRNDDCHTALGVARIKGHINVVRAIESH 130
            +  AK+G    V+ LLS G    N   ++D   T +  A    H+++V+ + S 
Sbjct: 81  LHLAAKKGHYEVVQYLLSNGQMDVNC--QDDGGWTPMIWATEYKHVDLVKLLLSK 133

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 69.0 bits (170), Expect = 2e-13
 Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 11/113 (9%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINA------- 79
             ++A++ L   GA ++  D EG T L +A    G   V + L+  G  ++N        
Sbjct: 55  NHLEAVKYLIKAGALVDPKDAEGSTCLHLAAK-KGHYEVVQYLLSNGQMDVNCQDDGGWT 113

Query: 80  --YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
                 +      V+LLLS G++  +R+++ +  L  A   G +++   + + 
Sbjct: 114 PMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAA 166

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 64.7 bits (159), Expect = 4e-12
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 10/93 (10%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINA---------YRPAKRGLEPTVRLLLSC 97
            +  ++PL  A   +G +++   L++ GANI+             A+      V+ L+  
Sbjct: 8   HQNKRSPLHAAAE-AGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA 66

Query: 98  GANALVRNDDCHTALGVARIKGHINVVRAIESH 130
           GA    ++ +  T L +A  KGH  VV+ + S+
Sbjct: 67  GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSN 99

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 55.1 bits (134), Expect = 9e-09
 Identities = 9/83 (10%), Positives = 24/83 (28%), Gaps = 10/83 (12%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           G VD    L +    L  ++  G +PL +A       +     +   +++          
Sbjct: 155 GCVDIAEILLAAKCDLHAVNIHGDSPLHIAAR-ENRYDCVVLFLSRDSDVTLKNKEGETP 213

Query: 80  -YRPAKRGLEPTVRLLLSCGANA 101
               +      +   +     ++
Sbjct: 214 LQCASLNSQVWSALQMSKALQDS 236

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 74.8 bits (185), Expect = 3e-16
 Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 12/113 (10%)

Query: 28  GDVDAIRAL-RSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA------- 79
           GDV  +R L   +    + +++ GKT L V    S    +A  L++ GA+ N        
Sbjct: 13  GDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGS--TAIALELLKQGASPNVQDTSGTS 70

Query: 80  --YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
             +  A+ G   T+++L+  GA+  V +      + +A  +GH  VV  + + 
Sbjct: 71  PVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 73.2 bits (181), Expect = 1e-15
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 11/113 (9%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           G       L  QGAS    D  G +P+  A   +G ++  K L+E GA++N         
Sbjct: 46  GSTAIALELLKQGASPNVQDTSGTSPVHDAA-RTGFLDTLKVLVEHGADVNVPDGTGALP 104

Query: 80  -YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI 131
            +   + G    V  L +  ++   R+    T L +A  +G  ++V  ++ H+
Sbjct: 105 IHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQGHM 156

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 49.3 bits (119), Expect = 3e-07
 Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 8/89 (8%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINA-----YRP---AKRGLEPTVRLLLSCGANA 101
               L  A     +  V + L     + +A              G       LL  GA+ 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61

Query: 102 LVRNDDCHTALGVARIKGHINVVRAIESH 130
            V++    + +  A   G ++ ++ +  H
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEH 90

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 77.1 bits (191), Expect = 6e-16
 Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 9/106 (8%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           G +  ++ L   GA +  +  +  TPL  AC+ SG  +    L++ GA++          
Sbjct: 103 GHLSCVKILLKHGAQVNGVTADWHTPLFNACV-SGSWDCVNLLLQHGASVQPESDLASPI 161

Query: 80  YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 125
           +  A+RG    V  L++ G N   +     T L +A        V+
Sbjct: 162 HEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVK 207

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 76.8 bits (190), Expect = 9e-16
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 9/105 (8%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYR----P- 82
           G V+ + +L + G +++       TPL +AC  +      K L+E GA++N  +    P 
Sbjct: 168 GHVECVNSLIAYGGNIDHKISHLGTPLYLACE-NQQRACVKKLLESGADVNQGKGQDSPL 226

Query: 83  ---AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 124
               +   E    LL+  GA+   +N +    + +   +  +  +
Sbjct: 227 HAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL 271

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 64.8 bits (159), Expect = 8e-12
 Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 10/88 (11%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINA---------YRPAKRGLEPTVRLLLSC 97
                +P+  A +  G     + LI  G  +N          +     G    V++LL  
Sbjct: 56  AVSDWSPMHEAAI-HGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH 114

Query: 98  GANALVRNDDCHTALGVARIKGHINVVR 125
           GA       D HT L  A + G  + V 
Sbjct: 115 GAQVNGVTADWHTPLFNACVSGSWDCVN 142

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 51.7 bits (125), Expect = 2e-07
 Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 18/115 (15%)

Query: 28  GDVDAIRALRSQGASLEWMDKE-----GKTPLIVACMDSGLINVAKTLIELGANINA--- 79
                   L  +G+ +  MD +     G  P                L+      +A   
Sbjct: 6   HHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDF------PGIRLLSNPLMGDAVSD 59

Query: 80  ----YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
               +  A  G + ++R L+S G    +   D  + L  A + GH++ V+ +  H
Sbjct: 60  WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH 114

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 46.3 bits (111), Expect = 9e-06
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP 82
              +    L   GA  +  + EGK P+ +   +S L      L   GA++   +P
Sbjct: 233 ASEELACLLMDFGADTQAKNAEGKRPVELVPPESPL--AQLFLEREGASLPKPKP 285

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 77.2 bits (191), Expect = 7e-16
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 10/106 (9%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           GD + +  L  +GA + + + +G T L  AC+D   +++ K L+E GANIN         
Sbjct: 51  GDTEEVLRLLERGADINYANVDGLTALHQACID-DNVDMVKFLVENGANINQPDNEGWIP 109

Query: 80  -YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 124
            +  A  G       L+S GA+    N +  T L +A  +    ++
Sbjct: 110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELL 155

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 64.8 bits (159), Expect = 9e-12
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 4/101 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL-GANINA--YRPAK 84
           G +D    L SQGA +  ++ EG TPL +A  +  +  + +  +   G +I A      +
Sbjct: 117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAE-EEAMEELLQNEVNRQGVDIEAARKEEER 175

Query: 85  RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 125
             L    + L S   N +       TAL VA  KG+  V++
Sbjct: 176 IMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 62.9 bits (154), Expect = 4e-11
 Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 16/119 (13%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
           L+Q  I  +VD ++ L   GA++   D EG  PL  A    G +++A+ LI  GA++ A 
Sbjct: 77  LHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS-CGYLDIAEYLISQGAHVGAV 135

Query: 80  --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
                       +  +E  ++  ++          D   A          +  + + S 
Sbjct: 136 NSEGDTPLDIAEEEAMEELLQNEVNRQGV------DIEAARKEEERIMLRDARQWLNSG 188

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 58.7 bits (143), Expect = 9e-10
 Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 11/104 (10%)

Query: 31  DAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA---------YR 81
             +     +    +    +G   L  AC  SG       L+E GA+IN          ++
Sbjct: 22  TDLEPPVVKRKKTKVKFDDGAVFLA-ACS-SGDTEEVLRLLERGADINYANVDGLTALHQ 79

Query: 82  PAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 125
                    V+ L+  GAN    +++    L  A   G++++  
Sbjct: 80  ACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAE 123

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 57.1 bits (139), Expect = 3e-09
 Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINA--------YRPAKRGLEPTVRLLLSCG 98
           D + K    +     G     +  +                      G    V  LL  G
Sbjct: 5   DAKQKRNEQLKRW-IGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERG 63

Query: 99  ANALVRNDDCHTALGVARIKGHINVVRAIESH 130
           A+    N D  TAL  A I  ++++V+ +  +
Sbjct: 64  ADINYANVDGLTALHQACIDDNVDMVKFLVEN 95

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 47.9 bits (115), Expect = 3e-06
 Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 27/101 (26%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGL 87
           G  + ++ L      +   D +G TPL  A    G     + L+E   ++ A        
Sbjct: 210 GYTEVLKLLIQARYDVNIKDYDGWTPLHAAAH-WGKEEACRILVENLCDMEA-------- 260

Query: 88  EPTVRLLLSCGANALVRNDDCHTALGVA--RIKGHINVVRA 126
                            N    TA  VA   I G++  ++ 
Sbjct: 261 ----------------VNKVGQTAFDVADEDILGYLEELQK 285

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 40.9 bits (97), Expect = 6e-04
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKR 85
           G  +A R L      +E ++K G+T   VA       ++   L EL    N     KR
Sbjct: 243 GKEEACRILVENLCDMEAVNKVGQTAFDVADE-----DILGYLEELQKKQNLLHSEKR 295

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79

 Score = 71.3 bits (175), Expect = 8e-16
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 446 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 495
           C++C E  +     PCGH   C SC ++++     CPVCR+++  V  +Y
Sbjct: 21  CMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEHVQHVY 66

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 76.0 bits (188), Expect = 1e-15
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 11/113 (9%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP----- 82
            + +           LE  + +G TPL VA +      + + L + GA++N   P     
Sbjct: 136 PENEEEPRDEDWRLQLEAENYDGHTPLHVAVI-HKDAEMVRLLRDAGADLNKPEPTCGRT 194

Query: 83  -----AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
                 +      + LLL  GA+   R     T LG A ++ +  + R + +H
Sbjct: 195 PLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH 247

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 73.7 bits (182), Expect = 7e-15
 Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 11/107 (10%)

Query: 28  GDVDAIRALRSQGASLEWMDKE-GKTPLIVACMDSGLINVAKTLIELGANINA------- 79
            D + +R LR  GA L   +   G+TPL +A   +   +V + L++ GA+  A       
Sbjct: 169 KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE-AQAASVLELLLKAGADPTARMYGGRT 227

Query: 80  --YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 124
                  R      RLL + GA       D  +    +      +  
Sbjct: 228 PLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNR 274

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 68.7 bits (169), Expect = 3e-13
 Identities = 23/124 (18%), Positives = 34/124 (27%), Gaps = 24/124 (19%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANIN------ 78
            I G+   +  L + GA +   ++ G T L +AC        A  L++   +        
Sbjct: 53  AILGEASTVEKLYAAGAGVLVAERGGHTALHLACR-VRAHTCACVLLQPRPSHPRDASDT 111

Query: 79  -----------------AYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI 121
                            A                         N D HT L VA I    
Sbjct: 112 YLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDA 171

Query: 122 NVVR 125
            +VR
Sbjct: 172 EMVR 175

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 65.3 bits (160), Expect = 5e-12
 Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 13/100 (13%)

Query: 43  LEWMDKEGKTPLIVACMDSGLINVAKTLIELGAN---INA---------YRPAKRGLEPT 90
             ++ ++G T L +A +          L+   A    ++          +  A  G   T
Sbjct: 2   FGYVTEDGDTALHLAVI-HQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 91  VRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
           V  L + GA  LV     HTAL +A           +   
Sbjct: 61  VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQP 100

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 75.3 bits (186), Expect = 2e-15
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 9/106 (8%)

Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA------- 79
                 +++           D  G +    A      + +  TL+  GA  N        
Sbjct: 9   TWKSKQLKSF-LSSKDTFKADVHGHSASYYAIA-DNNVRLVCTLLNAGALKNLLENEFPL 66

Query: 80  YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 125
           ++ A       V++LL  G +    +D  +TAL  A   G++  V+
Sbjct: 67  HQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVK 112

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 71.8 bits (177), Expect = 4e-14
 Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 12/108 (11%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
            D   ++ L   G      D +G T L  A   SG +   K  ++    +          
Sbjct: 73  EDTKIVKILLFSGLDDSQFDDKGNTALYYAVD-SGNMQTVKLFVKKNWRLMFYGKTGWKT 131

Query: 80  --YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 125
             Y          V   LS   +         + + +    GH++++ 
Sbjct: 132 SFYHAVMLNDVSIVSYFLSEIPSTFDLAIL-LSCIHITIKNGHVDMMI 178

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 65.2 bits (160), Expect = 7e-12
 Identities = 12/113 (10%), Positives = 32/113 (28%), Gaps = 19/113 (16%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-----YRP 82
            DV  +    S+  S         + + +    +G +++   L++   + N      + P
Sbjct: 140 NDVSIVSYFLSEIPSTF-DLAILLSCIHITIK-NGHVDMMILLLDYMTSTNTNNSLLFIP 197

Query: 83  -----AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
                        ++ L     N        ++A     +     + + I   
Sbjct: 198 DIKLAIDNKDIEMLQALFKYDINI-------YSANLENVLLDDAEIAKMIIEK 243

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 62.5 bits (153), Expect = 4e-11
 Identities = 16/108 (14%), Positives = 34/108 (31%), Gaps = 11/108 (10%)

Query: 28  GDVDAIRALRSQGASLEWMDKEG-KTPLIVACMDSGLINVAKTLIELGANINA----YRP 82
           G++  ++    +   L +  K G KT    A M    +++    +    +          
Sbjct: 106 GNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVM-LNDVSIVSYFLSEIPSTFDLAILLSC 164

Query: 83  ----AKRGLEPTVRLLLSCGANALVRNDDCHT-ALGVARIKGHINVVR 125
                K G    + LLL    +    N       + +A     I +++
Sbjct: 165 IHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQ 212

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 59.5 bits (145), Expect = 5e-10
 Identities = 13/98 (13%), Positives = 27/98 (27%), Gaps = 2/98 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA--YRPAKR 85
           G VD +  L     S    +     P I   +D+  I + + L +   NI +        
Sbjct: 172 GHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANLENVLL 231

Query: 86  GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINV 123
                 ++++         +      +        I  
Sbjct: 232 DDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIIS 269

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 74.4 bits (184), Expect = 3e-15
 Identities = 33/113 (29%), Positives = 63/113 (55%), Gaps = 11/113 (9%)

Query: 28  GDVDAIRALRSQGASLEWMD-KEGKTPLIVACMDSGLINVAKTLIELGANINA------- 79
              + ++ L  +GA ++ +D K G++PLI A  ++  +++ + L++ GAN+NA       
Sbjct: 127 ECQETVQLLLERGADIDAVDIKSGRSPLIHAV-ENNSLSMVQLLLQHGANVNAQMYSGSS 185

Query: 80  --YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
             +  + RGL P VR L+  GA++ ++N    T L VAR +  I+++R   + 
Sbjct: 186 ALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATR 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 69.8 bits (172), Expect = 9e-14
 Identities = 28/117 (23%), Positives = 44/117 (37%), Gaps = 15/117 (12%)

Query: 28  GDVDAIRALRSQGASLEW----MDKEGKTPLIVACMDSGLINVAKTLIELGANINA---- 79
                +RAL    A         + +G T L VA   +      + L+E GA+I+A    
Sbjct: 90  RSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN-TECQETVQLLLERGADIDAVDIK 148

Query: 80  ------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
                     +      V+LLL  GAN   +     +AL  A  +G + +VR +   
Sbjct: 149 SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS 205

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 65.9 bits (162), Expect = 2e-12
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 14/97 (14%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIEL----GANINA---------YRPAKRGLEPTVRL 93
           D++G TPL +A +  G +     L+ L    G  ++          +      L   VRL
Sbjct: 6   DEDGDTPLHIAVV-QGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL 64

Query: 94  LLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
           L++ GA+ +  +    TA  +A        +RA+   
Sbjct: 65  LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDS 101

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 64.0 bits (157), Expect = 9e-12
 Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 15/117 (12%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA----NINA---- 79
                +R L + GAS   +D+ G+T   +AC +       + L++  A    ++ A    
Sbjct: 57  TLPSVVRLLVTAGASPMALDRHGQTAAHLAC-EHRSPTCLRALLDSAAPGTLDLEARNYD 115

Query: 80  -----YRPAKRGLEPTVRLLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIESH 130
                +       + TV+LLL  GA+    +     + L  A     +++V+ +  H
Sbjct: 116 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH 172

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 62.1 bits (152), Expect = 4e-11
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 10/82 (12%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
             +  ++ L   GA++      G + L  A    GL+ + +TL+  GA+ +         
Sbjct: 161 NSLSMVQLLLQHGANVNAQMYSGSSALHSASG-RGLLPLVRTLVRSGADSSLKNCHNDTP 219

Query: 80  -YRPAKRGLEPTVRLLLSCGAN 100
                 R +   +R   +  A+
Sbjct: 220 LMVARSRRVIDILRGKATRPAS 241

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 72.4 bits (179), Expect = 4e-15
 Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 10/112 (8%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           G ++ +  L   GA +  +D  G TPL +A    G + + + L++ GA++NA        
Sbjct: 58  GHLEIVEVLLKNGADVNAVDHAGMTPLRLAA-LFGHLEIVEVLLKNGADVNANDMEGHTP 116

Query: 80  -YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
            +  A  G    V +LL  GA+   ++    TA  ++   G+ ++   ++  
Sbjct: 117 LHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 72.0 bits (178), Expect = 4e-15
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 10/112 (8%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           G  D +R L + GA +   D  G TPL +A   +G + + + L++ GA++NA        
Sbjct: 25  GRDDEVRILMANGADVNAEDASGWTPLHLAAF-NGHLEIVEVLLKNGADVNAVDHAGMTP 83

Query: 80  -YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
               A  G    V +LL  GA+    + + HT L +A + GH+ +V  +  +
Sbjct: 84  LRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 57.4 bits (140), Expect = 5e-10
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 10/93 (10%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINA---------YRPAKRGLEPTVRLLLSC 97
             +    L+ A   +G  +  + L+  GA++NA         +  A  G    V +LL  
Sbjct: 11  GSDLGKKLLEAAR-AGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN 69

Query: 98  GANALVRNDDCHTALGVARIKGHINVVRAIESH 130
           GA+    +    T L +A + GH+ +V  +  +
Sbjct: 70  GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN 102

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 43.5 bits (104), Expect = 3e-05
 Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 67  AKTLIELGANINA--YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 124
           +      G+++       A+ G +  VR+L++ GA+    +    T L +A   GH+ +V
Sbjct: 4   SHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIV 63

Query: 125 RAIESH 130
             +  +
Sbjct: 64  EVLLKN 69

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 73.4 bits (181), Expect = 5e-15
 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 12/113 (10%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
            D  A+  L  +   ++ +D+ G+T L+      G     + L E GA+++         
Sbjct: 56  ADEQALSQL-LEDRDVDAVDENGRTALLFVAG-LGSDKCVRLLAEAGADLDHRDMRGGLT 113

Query: 80  --YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
             +  A       V  L+  GA+  V ++   TAL +AR              
Sbjct: 114 ALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQF 166

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 61.1 bits (149), Expect = 9e-11
 Identities = 25/113 (22%), Positives = 37/113 (32%), Gaps = 15/113 (13%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           G   +        A +     E +TP   A            L+E   +++A        
Sbjct: 26  GHSPSWVPSSYIAADV---VSEYETPWWTAAR-KADEQALSQLLE-DRDVDAVDENGRTA 80

Query: 80  -YRPAKRGLEPTVRLLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIESH 130
               A  G +  VRLL   GA+   R+     TAL +A       VV A+   
Sbjct: 81  LLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 133

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 58.4 bits (142), Expect = 8e-10
 Identities = 16/109 (14%), Positives = 28/109 (25%), Gaps = 15/109 (13%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA------YR 81
              + + AL   GA +E  D+ G T L +A  +          ++ G  I          
Sbjct: 122 VRPEVVEALVELGADIEVEDERGLTALELAR-EILKTTPKGNPMQFGRRIGLEKVINVLE 180

Query: 82  PAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
                      ++   G               + R K   +       H
Sbjct: 181 GQVFEYAEVDEIVEKRGKGK--------DVEYLVRWKDGGDCEWVKGVH 221

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 16/109 (14%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA------YR 81
           G+V+ I   R+          EG    ++   D G          + A++ +      + 
Sbjct: 1   GEVNKIIGSRT--------AGEGAMEYLIEWKD-GHSPSWVPSSYIAADVVSEYETPWWT 51

Query: 82  PAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
            A++  E  +  LL    +    +++  TAL      G    VR +   
Sbjct: 52  AARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA 99

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 71.7 bits (177), Expect = 8e-15
 Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 10/102 (9%)

Query: 38  SQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA---------YRPAKRGLE 88
           S+G+++   D  GKTPL+ + +  G   ++  L+E GAN+N             +K G  
Sbjct: 89  SKGSNVNTKDFSGKTPLMWSII-FGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRS 147

Query: 89  PTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
             V+ LL  GA+   R+    TA   ARI G   V++     
Sbjct: 148 EIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEV 189

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 70.1 bits (173), Expect = 3e-14
 Identities = 32/107 (29%), Positives = 43/107 (40%), Gaps = 10/107 (9%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           G  +AI  L      LE  D EG T LI A   +  + +A+ L+  G+N+N         
Sbjct: 46  GMENAIDKLVENFDKLEDKDIEGSTALIWAVK-NNRLGIAEKLLSKGSNVNTKDFSGKTP 104

Query: 80  -YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 125
                  G       LL  GAN   RN +  T L VA   G   +V+
Sbjct: 105 LMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVK 151

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 63.9 bits (157), Expect = 4e-12
 Identities = 23/104 (22%), Positives = 36/104 (34%), Gaps = 12/104 (11%)

Query: 32  AIRALRSQGASL--EWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA---------Y 80
                 +Q       + D   +TPL+VACM  G+ N    L+E    +            
Sbjct: 15  KDEKSINQNLDFLRNYRDSYNRTPLMVACM-LGMENAIDKLVENFDKLEDKDIEGSTALI 73

Query: 81  RPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 124
              K         LLS G+N   ++    T L  + I G+  + 
Sbjct: 74  WAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMS 117

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 74.1 bits (183), Expect = 1e-14
 Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 10/106 (9%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-----YRP 82
             V  ++ L   GA +   DK G  PL  AC   G   V + L++ GA +NA     + P
Sbjct: 69  NRVRIVQLLLQHGADVHAKDKGGLVPLHNACS-YGHYEVTELLLKHGACVNAMDLWQFTP 127

Query: 83  ----AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 124
               A +       LLLS GA+  + N    +A+ +A        +
Sbjct: 128 LHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERL 173

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 68.7 bits (169), Expect = 8e-13
 Identities = 21/99 (21%), Positives = 30/99 (30%), Gaps = 9/99 (9%)

Query: 36  LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA---------YRPAKRG 86
           L    A      +  K  L+ A        +   L  L  N +A         +  A   
Sbjct: 10  LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYN 69

Query: 87  LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 125
               V+LLL  GA+   ++      L  A   GH  V  
Sbjct: 70  RVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTE 108

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 66.4 bits (163), Expect = 4e-12
 Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 11/114 (9%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACM--DSGLINVAKTLIELGANINA------ 79
            D+  ++   +         +  +T L  A          VA+ L+  GAN+N       
Sbjct: 189 ADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFM 248

Query: 80  ---YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
              +  A+R     + +L   GA     +    TAL  A + GH+   R + S+
Sbjct: 249 TPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSY 302

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 60.6 bits (148), Expect = 3e-10
 Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 4/101 (3%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGL 87
             V+    L S GA    ++  GK+ + +A     L        +  + + A   A+   
Sbjct: 135 NRVEVCSLLLSHGADPTLVNCHGKSAVDMAPT-PELRERLTYEFKGHSLLQA---AREAD 190

Query: 88  EPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 128
              V+  L+       +     TAL  A    H    +  E
Sbjct: 191 LAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAE 231

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 56.0 bits (136), Expect = 1e-08
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 11/98 (11%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGL 87
              D +  L   GA +  +D  G+T L  A + +G +   + L+  G++ +    + +G 
Sbjct: 258 AHNDVMEVLHKHGAKMNALDSLGQTALHRAAL-AGHLQTCRLLLSYGSDPSI--ISLQGF 314

Query: 88  EP------TVRLLLSCGANALVRNDDCHTALGVARIKG 119
                    V+ +LS      +R  D    L  A   G
Sbjct: 315 TAAQMGNEAVQQILSESTP--MRTSDVDYRLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 45.9 bits (110), Expect = 2e-05
 Identities = 12/76 (15%), Positives = 20/76 (26%), Gaps = 10/76 (13%)

Query: 65  NVAKTLIELGANINA----------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGV 114
             A  L +  A                      E  + LL     N    +    T L +
Sbjct: 5   KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHL 64

Query: 115 ARIKGHINVVRAIESH 130
           A     + +V+ +  H
Sbjct: 65  AAGYNRVRIVQLLLQH 80

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 71.7 bits (177), Expect = 1e-14
 Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 11/108 (10%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
                   L+     ++ +D EG TPL +A   +  I +AK LI+ GA+IN         
Sbjct: 17  DTKKVKEILQDTTYQVDEVDTEGNTPLNIAV-HNNDIEIAKALIDRGADINLQNSISDSP 75

Query: 80  -YRPAKRGLEPTVRLLLSCGANAL-VRNDDCHTALGVARIKGHINVVR 125
                 +G    +  +L      L   N     AL  A  KGHI+ V+
Sbjct: 76  YLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVK 123

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 70.6 bits (174), Expect = 3e-14
 Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 17/119 (14%)

Query: 28  GDVDAIRALRSQGAS-LEWMDKEGKTPLIVACMDSGLINVAKTLIELG-ANINA------ 79
           G  + +  +       L   ++ G   LI A    G I+  K L+E G  +I+       
Sbjct: 83  GRTEILAYMLKHATPDLNKHNRYGGNALIPAAE-KGHIDNVKLLLEDGREDIDFQNDFGY 141

Query: 80  --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
                    R   +  +  V+LL+  GA+  ++++   TA+  A  KG+  + + +  +
Sbjct: 142 TALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 63.6 bits (156), Expect = 7e-12
 Identities = 12/93 (12%), Positives = 26/93 (27%), Gaps = 10/93 (10%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINA---------YRPAKRGLEPTVRLLLSC 97
             E    L  A        V + L +    ++                      + L+  
Sbjct: 3   TYEVGALLEAANQR-DTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61

Query: 98  GANALVRNDDCHTALGVARIKGHINVVRAIESH 130
           GA+  ++N    +    A  +G   ++  +  H
Sbjct: 62  GADINLQNSISDSPYLYAGAQGRTEILAYMLKH 94

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 67.5 bits (165), Expect = 1e-14
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 433 SASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVI 492
           S+     + +S  CV+C    V    +PC H   C  C+   +     CP+CR  + +  
Sbjct: 5   SSGVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ----QCPMCRQFVQESF 60

Query: 493 RLY 495
            L 
Sbjct: 61  ALS 63

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 67.5 bits (165), Expect = 1e-14
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 446 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 495
           C IC +  +    VPCGH+  C  C   +      CP+C T I    +++
Sbjct: 28  CKICMDRNIAIVFVPCGHLVTCKQCAEAVD----KCPMCYTVITFKQKIF 73

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 72.1 bits (178), Expect = 2e-14
 Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 10/112 (8%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
                +  L +  A +  +D  GK+ L  A      ++ A  L++ GAN +         
Sbjct: 135 AVEGMLEDLINSHADVNAVDDLGKSALHWAAA-VNNVDAAVVLLKNGANKDMQNNREETP 193

Query: 80  -YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
            +  A+ G   T ++LL   AN  + +        +A+ + H ++VR ++  
Sbjct: 194 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLE 245

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 66.7 bits (164), Expect = 1e-12
 Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 11/113 (9%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINA------- 79
              DA + L    A     D  G+TPL  A   +    V + LI   A +++A       
Sbjct: 68  SRSDAAKRLLEASADANIQDNMGRTPLHAAVS-ADAQGVFQILIRNRATDLDARMHDGTT 126

Query: 80  --YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
                A+  +E  +  L++  A+    +D   +AL  A    +++    +  +
Sbjct: 127 PLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 179

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 65.6 bits (161), Expect = 3e-12
 Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 11/116 (9%)

Query: 25  VIAGDVDAIRALRSQGAS-LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA---- 79
           V A      + L    A+ L+    +G TPLI+A     +  + + LI   A++NA    
Sbjct: 98  VSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR-LAVEGMLEDLINSHADVNAVDDL 156

Query: 80  -----YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
                +  A         +LL  GAN  ++N+   T L +A  +G     + +  H
Sbjct: 157 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 212

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 55.6 bits (135), Expect = 6e-09
 Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 22/101 (21%)

Query: 47  DKEGKTPLIVACM------------DSGLINVAKTLIELGANINA----------YRPAK 84
             +G TPL++A              +     V    I  GA+++           +  A+
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 66

Query: 85  RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 125
                  + LL   A+A ++++   T L  A       V +
Sbjct: 67  YSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQ 107

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 45.9 bits (110), Expect = 9e-06
 Identities = 7/51 (13%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANIN 78
           G  +  + L    A+ +  D   + P  +A  +    ++ + L     + +
Sbjct: 201 GSYETAKVLLDHFANRDITDHMDRLPRDIAQ-ERMHHDIVRLLDLEHHHHH 250

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 70.1 bits (173), Expect = 2e-14
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 15/115 (13%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           G+ +  R L  +GA+ +  D+ G   +  A    G ++  +TL+E  A++N         
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA-GFLDTLQTLLEFQADVNIEDNEGNLP 106

Query: 80  -YRPAKRGLEPTVRLLLSCGA---NALVRNDDCHTALGVARIKGHINVVRAIESH 130
            +  AK G    V  L+   A       RN    TA  +AR+ G   VV  ++++
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGH--RNHKGDTACDLARLYGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 69.7 bits (172), Expect = 3e-14
 Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 11/112 (9%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           GD++ + +L     ++   +  G+T L V  + +    +A+ L+  GAN +         
Sbjct: 16  GDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGN--PEIARRLLLRGANPDLKDRTGFAV 73

Query: 80  -YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
            +  A+ G   T++ LL   A+  + +++ +  L +A  +GH+ VV  +  H
Sbjct: 74  IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 59.3 bits (145), Expect = 8e-11
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 9/93 (9%)

Query: 46  MDKEGKTPLIVACMDSGLINVAKTLIELGANINA-----YRP---AKRGLEPTVRLLLSC 97
           M +     L  A    G +    +L++   N+NA            K G     R LL  
Sbjct: 1   MAEPWGNELASAAA-RGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR 59

Query: 98  GANALVRNDDCHTALGVARIKGHINVVRAIESH 130
           GAN  +++      +  A   G ++ ++ +   
Sbjct: 60  GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEF 92

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 48.9 bits (118), Expect = 4e-07
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 11/82 (13%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINA------- 79
           G +D ++ L    A +   D EG  PL +A  + G + V + L++  A N+         
Sbjct: 81  GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE-GHLRVVEFLVKHTASNVGHRNHKGDT 139

Query: 80  --YRPAKRGLEPTVRLLLSCGA 99
                   G    V L+ + GA
Sbjct: 140 ACDLARLYGRNEVVSLMQANGA 161

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 69.0 bits (170), Expect = 2e-14
 Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 10/112 (8%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           G  D +R L + GA +   D+ G TPL +A    G + + + L++ GA++NA        
Sbjct: 25  GQDDEVRILMANGADVNAKDEYGLTPLYLATA-HGHLEIVEVLLKNGADVNAVDAIGFTP 83

Query: 80  -YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
            +  A  G      +LL  GA+   ++    TA  ++   G+ ++   ++  
Sbjct: 84  LHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 52.0 bits (126), Expect = 2e-08
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINA---------YRPAKRGLEPTVRLLLSCGAN 100
               L+ A   +G  +  + L+  GA++NA         Y     G    V +LL  GA+
Sbjct: 14  LGKKLLEAAR-AGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72

Query: 101 ALVRNDDCHTALGVARIKGHINVVRAIESH 130
               +    T L +A   GH+ +   +  H
Sbjct: 73  VNAVDAIGFTPLHLAAFIGHLEIAEVLLKH 102

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 41.6 bits (99), Expect = 7e-05
 Identities = 14/66 (21%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 67  AKTLIELGANINA--YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 124
           +      G+++       A+ G +  VR+L++ GA+   +++   T L +A   GH+ +V
Sbjct: 4   SHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIV 63

Query: 125 RAIESH 130
             +  +
Sbjct: 64  EVLLKN 69

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 69.3 bits (171), Expect = 3e-14
 Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 10/107 (9%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           G       L   G S +   K  +TPL +A    G  N+ + L++ GA++NA        
Sbjct: 45  GHFSTTEVLLRAGVSRDARTKVDRTPLHMAAS-EGHANIVEVLLKHGADVNAKDMLKMTA 103

Query: 80  -YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 125
            +   +   +  V LL+  GA+   ++  C TA  ++   G+ ++  
Sbjct: 104 LHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE 150

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 65.9 bits (162), Expect = 4e-13
 Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 11/112 (9%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           G  D +R L + GA     D  G +PL +A    G  +  + L+  G + +A        
Sbjct: 13  GQDDEVRILMANGAPFT-TDWLGTSPLHLAAQ-YGHFSTTEVLLRAGVSRDARTKVDRTP 70

Query: 80  -YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
            +  A  G    V +LL  GA+   ++    TAL  A    H  VV  +  +
Sbjct: 71  LHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 57.0 bits (139), Expect = 5e-10
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 9/90 (10%)

Query: 49  EGKTPLIVACMDSGLINVAKTLIELGANINA--------YRPAKRGLEPTVRLLLSCGAN 100
           +    L+ A   +G  +  + L+  GA            +  A+ G   T  +LL  G +
Sbjct: 1   DLGKKLLEAAR-AGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 101 ALVRNDDCHTALGVARIKGHINVVRAIESH 130
              R     T L +A  +GH N+V  +  H
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKH 89

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 69.8 bits (172), Expect = 3e-14
 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 12/113 (10%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
            D  A+  L  +   ++ +D+ G+T L+      G     + L E GA+++         
Sbjct: 55  ADEQALSQL-LEDRDVDAVDENGRTALLFVA-GLGSDKCVRLLAEAGADLDHRDMRGGLT 112

Query: 80  --YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
             +  A       V  L+  GA+  V ++   TAL +AR              
Sbjct: 113 ALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 51.7 bits (125), Expect = 6e-08
 Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 9/69 (13%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGL 87
              + + AL   GA +E  D+ G T L +A  +          ++ G  I          
Sbjct: 121 VRPEVVEALVELGADIEVEDERGLTALELAR-EILKTTPKGNPMQFGRRIGL-------- 171

Query: 88  EPTVRLLLS 96
           E  + +L  
Sbjct: 172 EKVINVLEG 180

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 67.6 bits (166), Expect = 4e-14
 Identities = 20/110 (18%), Positives = 43/110 (39%), Gaps = 13/110 (11%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
                   L  +G+ +     +    L+ A    G  +  + L+  GA++ A        
Sbjct: 5   HHHHHSSGLVPRGSHM---GSDLGKKLLEAARA-GQDDEVRILMANGADVAAKDKNGSTP 60

Query: 80  -YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 128
            +  A+ G    V+LLL  GA+   ++    TA  ++   G+ ++   ++
Sbjct: 61  LHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 53.0 bits (128), Expect = 5e-09
 Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 66  VAKTLIELGANINA------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG 119
            +  L+  G+++ +         A+ G +  VR+L++ GA+   ++ +  T L +A   G
Sbjct: 9   HSSGLVPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNG 68

Query: 120 HINVVRAIESH 130
           H+ VV+ +   
Sbjct: 69  HLEVVKLLLEA 79

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 70.1 bits (173), Expect = 5e-14
 Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 10/112 (8%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
                +  L +  A +  +D  GK+ L  A      ++ A  L++ GAN +         
Sbjct: 103 AVEGMLEDLINSHADVNAVDDLGKSALHWAAA-VNNVDAAVVLLKNGANKDMQNNREETP 161

Query: 80  -YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
            +  A+ G   T ++LL   AN  + +        +A+ + H ++VR ++ +
Sbjct: 162 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY 213

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 65.9 bits (162), Expect = 2e-12
 Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 11/113 (9%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINA------- 79
              DA + L    A     D  G+TPL  A   +    V + LI   A +++A       
Sbjct: 36  SRSDAAKRLLEASADANIQDNMGRTPLHAAVS-ADAQGVFQILIRNRATDLDARMHDGTT 94

Query: 80  --YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
                A+  +E  +  L++  A+    +D   +AL  A    +++    +  +
Sbjct: 95  PLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 147

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 65.5 bits (161), Expect = 2e-12
 Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 11/116 (9%)

Query: 25  VIAGDVDAIRALRSQGAS-LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA---- 79
           V A      + L    A+ L+    +G TPLI+A     +  + + LI   A++NA    
Sbjct: 66  VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL-AVEGMLEDLINSHADVNAVDDL 124

Query: 80  -----YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
                +  A         +LL  GAN  ++N+   T L +A  +G     + +  H
Sbjct: 125 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 180

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 44.7 bits (107), Expect = 2e-05
 Identities = 20/100 (20%), Positives = 31/100 (31%), Gaps = 26/100 (26%)

Query: 27  AGDVDAIRALRSQGASLEW-MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKR 85
                 I     QGASL    D+ G+T L +A                         A+ 
Sbjct: 1   GDAPAVISDFIYQGASLHNQTDRTGETALHLA-------------------------ARY 35

Query: 86  GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 125
                 + LL   A+A ++++   T L  A       V +
Sbjct: 36  SRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQ 75

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 42.8 bits (102), Expect = 1e-04
 Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
           G  +  + L    A+ +  D   + P  +A  +    ++ + L E     + 
Sbjct: 169 GSYETAKVLLDHFANRDITDHMDRLPRDIAQ-ERMHHDIVRLLDEYNLVRSP 219

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 69.9 bits (172), Expect = 1e-13
 Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 17/119 (14%)

Query: 28  GDVDAIRALRSQGASLEWM------DKEGKTPLIVACMDSGLINVAKTLIELGANINA-- 79
           G + ++  L     +          +  G T L +A +  G + + + L+ LGA++NA  
Sbjct: 89  GCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI-HGYLGIVELLVSLGADVNAQE 147

Query: 80  --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
                   +          V LLL CGA+        ++   +   +    + + +   
Sbjct: 148 PCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 206

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 68.7 bits (169), Expect = 2e-13
 Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 16/111 (14%)

Query: 30  VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-----YRP-- 82
           ++ IR ++   A L + +   +TPL +A + +    +A+ L+  G +          P  
Sbjct: 25  MEVIRQVKGDLAFLNFQNNLQQTPLHLAVI-TNQPEIAEALLGAGCDPELRDFRGNTPLH 83

Query: 83  --AKRGLEPTVRLLLSCGANALV------RNDDCHTALGVARIKGHINVVR 125
              ++G   +V +L        +       N + HT L +A I G++ +V 
Sbjct: 84  LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 65.3 bits (160), Expect = 3e-12
 Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 11/110 (10%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDK-EGKTPLIVACMDSGLINVAKTLIELGANINA---- 79
            I G +  +  L S GA +   +   G+T L +A  D    ++   L++ GA++N     
Sbjct: 125 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV-DLQNPDLVSLLLKCGADVNRVTYQ 183

Query: 80  -YRP----AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 124
            Y P      R      + L       L    +                 
Sbjct: 184 GYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 62.6 bits (153), Expect = 3e-11
 Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 12/96 (12%)

Query: 47  DKEGKTPLIVACM---DSGLINVAKTLIELGANINA---------YRPAKRGLEPTVRLL 94
            ++G + L +A +    +  + V + +    A +N          +             L
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64

Query: 95  LSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
           L  G +  +R+   +T L +A  +G +  V  +   
Sbjct: 65  LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS 100

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 62.2 bits (152), Expect = 4e-11
 Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 17/122 (13%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP-- 82
           VI    +   AL   G   E  D  G TPL +AC   G +     L +     + +    
Sbjct: 53  VITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE-QGCLASVGVLTQSCTTPHLHSILK 111

Query: 83  -------------AKRGLEPTVRLLLSCGANALVR-NDDCHTALGVARIKGHINVVRAIE 128
                        +  G    V LL+S GA+   +   +  TAL +A    + ++V  + 
Sbjct: 112 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 171

Query: 129 SH 130
             
Sbjct: 172 KC 173

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 69.6 bits (171), Expect = 1e-13
 Identities = 23/111 (20%), Positives = 37/111 (33%), Gaps = 13/111 (11%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA----- 79
           V AG  + ++ L   G ++   D +G TPL  A      + V K L+E GA + A     
Sbjct: 78  VCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAAS-CNNVQVCKFLVESGAAVFAMTYSD 136

Query: 80  -------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINV 123
                      + G     + L        + N     AL     +    +
Sbjct: 137 MQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDEL 187

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 69.6 bits (171), Expect = 1e-13
 Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 13/115 (11%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           G+ D ++ +  +       + EG T L  A    G   + K L++ G N+NA        
Sbjct: 48  GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA-GHTEIVKFLVQFGVNVNAADSDGWTP 106

Query: 80  -YRPAKRGLEPTVRLLLSCGA--NALVRND-DCHTALGVARIKGHINVVRAIESH 130
            +  A        + L+  GA   A+  +D            +G+    + +   
Sbjct: 107 LHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 161

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 64.2 bits (157), Expect = 9e-12
 Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 9/87 (10%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINA--------YRPAKRGLEPTVRLLLSCG 98
           +  G+  L      + L       I  G  +             +  G    V+ ++   
Sbjct: 2   EITGQVSLPPGKR-TNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 99  ANALVRNDDCHTALGVARIKGHINVVR 125
            +  + ND+  TAL  A   GH  +V+
Sbjct: 61  DDPSLPNDEGITALHNAVCAGHTEIVK 87

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 70.2 bits (173), Expect = 1e-13
 Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 20/117 (17%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
              D +  L   GA      K G TP ++A + +G + + K  +  GA++N         
Sbjct: 50  SREDIVELLLRHGADPVLRKKNGATPFLLAAI-AGSVKLLKLFLSKGADVNECDFYGFTA 108

Query: 80  -YRPAKRGLEPTVRLLLSCGAN----------ALVRNDDCHTALGVARIKGHINVVR 125
               A  G    ++ L   GAN                   TAL  A  KGH+ V++
Sbjct: 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 165

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 68.7 bits (169), Expect = 4e-13
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 11/111 (9%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKE-GKTPLIVACMDSGLINVAKTLIELGANINA---- 79
           V   DVD ++ L   GA++ + ++E G TPL  A       ++ + L+  GA+       
Sbjct: 13  VQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQ-MSREDIVELLLRHGADPVLRKKN 71

Query: 80  -----YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 125
                   A  G    ++L LS GA+    +    TA   A + G +  ++
Sbjct: 72  GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK 122

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 65.2 bits (160), Expect = 6e-12
 Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 21/120 (17%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP----- 82
           G V  ++   S+GA +   D  G T  + A    G +   K L + GAN+N  R      
Sbjct: 83  GSVKLLKLFLSKGADVNECDFYGFTAFMEAA-VYGKVKALKFLYKRGANVNLRRKTKEDQ 141

Query: 83  --------------AKRGLEPTVRLLLS-CGANALVRNDDCHTALGVARIKGHINVVRAI 127
                         A++G    +++LL   GA+    ++    AL  A +    + V AI
Sbjct: 142 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAI 201

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 65.2 bits (160), Expect = 7e-12
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 11/89 (12%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINA----------YRPAKRGLEPTVRLLLS 96
             E    LI A   +  +++ + L+E GAN+N           +   +   E  V LLL 
Sbjct: 2   AVEDNHLLIKAVQ-NEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 97  CGANALVRNDDCHTALGVARIKGHINVVR 125
            GA+ ++R  +  T   +A I G + +++
Sbjct: 61  HGADPVLRKKNGATPFLLAAIAGSVKLLK 89

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 63.6 bits (156), Expect = 2e-11
 Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 13/108 (12%)

Query: 36  LRSQGASLEWMDKEGKTPLIVACM---DSGLINVAKTLIELGANINA---------YRPA 83
           L   GA +   D  G+  LI A +   DS +  +   L++ GA++N              
Sbjct: 168 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227

Query: 84  KRGLEPTVRLLLS-CGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
           ++     V+ LL          + D  TAL +A       +   +   
Sbjct: 228 EKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 63.6 bits (156), Expect = 2e-11
 Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 26/128 (20%)

Query: 28  GDVDAIRALRSQGA----------SLEWMDKEGKTPLIVACMDSGLINVAKTLI-ELGAN 76
           G V A++ L  +GA            E + K G T L+ A    G + V K L+ E+GA+
Sbjct: 116 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE-KGHVEVLKILLDEMGAD 174

Query: 77  IN-------------AYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINV 123
           +N                     +E    LLL  GA+  VR +   T L +A  K H+ +
Sbjct: 175 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL 234

Query: 124 VRA-IESH 130
           V+  +E  
Sbjct: 235 VQRLLEQE 242

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 46.3 bits (111), Expect = 9e-06
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 28  GDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
             +  ++ L  Q    +   D +GKT L++A     L  +A+ L + GA+ + 
Sbjct: 230 KHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE-LKLKKIAELLCKRGASTDC 281

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 67.4 bits (166), Expect = 2e-13
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 11/112 (9%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
             V  +  L   GA +   DK G  PL  AC   G   VA+ L++ GA +N         
Sbjct: 53  NRVSVVEYLLQHGADVHAKDKGGLVPLHNACSY-GHYEVAELLVKHGAVVNVADLWKFTP 111

Query: 80  -YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
            +  A +G     +LLL  GA+   +N D +T L + +  G  ++   +   
Sbjct: 112 LHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 58.2 bits (142), Expect = 2e-10
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 11/113 (9%)

Query: 28  GDVDAIRALRS-QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA------- 79
           GDV+ ++ L + Q  +   ++    TPL  A      ++V + L++ GA+++A       
Sbjct: 19  GDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAG-YNRVSVVEYLLQHGADVHAKDKGGLV 77

Query: 80  --YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
             +     G      LL+  GA   V +    T L  A  KG   + + +  H
Sbjct: 78  PLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 130

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 53.2 bits (129), Expect = 1e-08
 Identities = 19/88 (21%), Positives = 27/88 (30%), Gaps = 11/88 (12%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIEL-GANINA-----YRP----AKRGLEPTVRLLLS 96
           + E    L+ A   +G +   K L  +   N          P    A       V  LL 
Sbjct: 5   NSEADRQLLEAAK-AGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63

Query: 97  CGANALVRNDDCHTALGVARIKGHINVV 124
            GA+   ++      L  A   GH  V 
Sbjct: 64  HGADVHAKDKGGLVPLHNACSYGHYEVA 91

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 65.9 bits (162), Expect = 2e-13
 Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 12/95 (12%)

Query: 40  GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-----YRP----AKRGLEPT 90
           G       K+G TPL  A   +G     K L+  GA++NA       P    AK G    
Sbjct: 1   GHMWG--SKDGNTPLHNAA-KNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEI 57

Query: 91  VRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 125
           V+LLL+ GA+   R+ D +T   +A+  GH  +V+
Sbjct: 58  VKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVK 92

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 65.5 bits (161), Expect = 2e-13
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 10/94 (10%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           G  + ++ L S+GA +    K+G TPL +A  + G   + K L+  GA++NA        
Sbjct: 20  GHAEEVKKLLSKGADVNARSKDGNTPLHLAAKN-GHAEIVKLLLAKGADVNARSKDGNTP 78

Query: 80  -YRPAKRGLEPTVRLLLSCGANALVRNDDCHTAL 112
            +   K G    V+LL + GA+   R+       
Sbjct: 79  EHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 70.3 bits (173), Expect = 3e-13
 Identities = 14/115 (12%), Positives = 38/115 (33%), Gaps = 15/115 (13%)

Query: 30  VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL-----GANINA----- 79
           ++ I+ L   GAS    DK  +TPL+ A  +         +++         ++      
Sbjct: 153 LEMIKILVQLGASPTAKDKADETPLMRAM-EFRNREALDLMMDTVPSKSSLRLDYANKQG 211

Query: 80  ----YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
               +       E      +  G +  + +++    L ++     + + + +   
Sbjct: 212 NSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 68.4 bits (168), Expect = 9e-13
 Identities = 19/106 (17%), Positives = 30/106 (28%), Gaps = 14/106 (13%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------Y 80
           G  D +R L   G S    ++ G T L +AC   G ++ AK L  +G   +        +
Sbjct: 31  GQTDEVRRLIETGVSPTIQNRFGCTALHLACK-FGCVDTAKYLASVGEVHSLWHGQKPIH 89

Query: 81  RPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRA 126
                     V  L+                  +        V   
Sbjct: 90  LAVMANKTDLVVALVEGAKE------RGQMPESLLNECDEREVNEI 129

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 65.7 bits (161), Expect = 8e-12
 Identities = 14/125 (11%), Positives = 30/125 (24%), Gaps = 23/125 (18%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP----- 82
              D        G  +   D E   PL ++   + ++ + K L++               
Sbjct: 222 NWEDVAMRFVEMGIDVNMEDNEHTVPLYLSV-RAAMVLLTKELLQKTDVFLIQACPYHNG 280

Query: 83  -----------------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 125
                            A    +  ++LL       +   +         + K    V R
Sbjct: 281 TTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKR 340

Query: 126 AIESH 130
              + 
Sbjct: 341 MKLAP 345

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 56.0 bits (136), Expect = 9e-09
 Identities = 20/130 (15%), Positives = 38/130 (29%), Gaps = 35/130 (26%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA------------ 75
           G VD  + L S G         G+ P+ +A M +   ++   L+E               
Sbjct: 64  GCVDTAKYLASVGEVHS--LWHGQKPIHLAVM-ANKTDLVVALVEGAKERGQMPESLLNE 120

Query: 76  ---------NINA-----YRP----AKRGLE--PTVRLLLSCGANALVRNDDCHTALGVA 115
                      +                G E    +++L+  GA+   ++    T L  A
Sbjct: 121 CDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRA 180

Query: 116 RIKGHINVVR 125
               +   + 
Sbjct: 181 MEFRNREALD 190

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 56.0 bits (136), Expect = 1e-08
 Identities = 12/97 (12%), Positives = 24/97 (24%), Gaps = 10/97 (10%)

Query: 29  DVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-----YRP- 82
                      G ++          +  A  D     V + L E    +           
Sbjct: 269 VFLIQACPYHNGTTVLPDRVVWLDFVPAAA-DPSKQEVLQLLQEKLDEVVRSLNTGAGGA 327

Query: 83  ---AKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 116
               K+      R+ L+  A    R+     +  V++
Sbjct: 328 VKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 25/79 (31%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRND 106
           D E    + VA                         A++G    VR L+  G +  ++N 
Sbjct: 17  DDENMEKIHVA-------------------------ARKGQTDEVRRLIETGVSPTIQNR 51

Query: 107 DCHTALGVARIKGHINVVR 125
              TAL +A   G ++  +
Sbjct: 52  FGCTALHLACKFGCVDTAK 70

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 62.8 bits (154), Expect = 1e-12
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 10/85 (11%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINA---------YRPAKRGLEPTVRLLLSCGAN 100
           G+TPL +A   +G + V K L+E GA++NA         +  A+ G    V+LLL  GA+
Sbjct: 2   GRTPLHLAA-RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 101 ALVRNDDCHTALGVARIKGHINVVR 125
              ++ +  T L +A   GH+ VV+
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVK 85

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 60.1 bits (147), Expect = 1e-11
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 10/81 (12%)

Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
          G ++ ++ L   GA +   DK G+TPL +A  + G + V K L+E GA++NA        
Sbjct: 13 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAKDKNGRTP 71

Query: 80 -YRPAKRGLEPTVRLLLSCGA 99
           +  A+ G    V+LLL  GA
Sbjct: 72 LHLAARNGHLEVVKLLLEAGA 92

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 64.7 bits (158), Expect = 2e-12
 Identities = 23/126 (18%), Positives = 43/126 (34%), Gaps = 21/126 (16%)

Query: 26  IAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD-----SGLINVAKTLIELGANINA- 79
                     L ++GA ++   KEG T             +G   + K  +E GA+I A 
Sbjct: 51  DEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITAL 110

Query: 80  --------------YRPAKRGLEPTVRLLL-SCGANALVRNDDCHTALGVARIKGHINVV 124
                         Y   +  + P  +L+    G   L+++    TAL   +       +
Sbjct: 111 YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIAL 170

Query: 125 RAIESH 130
           + +E +
Sbjct: 171 KMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 51.6 bits (124), Expect = 6e-08
 Identities = 9/97 (9%), Positives = 30/97 (30%), Gaps = 15/97 (15%)

Query: 26  IAGDVDAIRALRSQGASLEWMDKEGKTPLIVACM-----DSGLINVAKTLI-ELGANINA 79
           I G  +  +    +GA +  + K  K  +          ++ +I + K +  + G  +  
Sbjct: 90  ITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI 149

Query: 80  -----YRP----AKRGLEPTVRLLLSCGANALVRNDD 107
                        +      ++++        ++ + 
Sbjct: 150 KDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 13/93 (13%), Positives = 20/93 (21%), Gaps = 13/93 (13%)

Query: 48  KEGKTPLIVACMDSGLINVAKTLIELGANIN------------AYRPAKRGLEPTVRLLL 95
                 +  A M  G       L E G                               L+
Sbjct: 4   MSEYRTVSAAAM-LGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLI 62

Query: 96  SCGANALVRNDDCHTALGVARIKGHINVVRAIE 128
           + GA+   R  +  T        G  ++    E
Sbjct: 63  NKGADIKSRTKEGTTLFFPLFQGGGNDITGTTE 95

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 66.9 bits (163), Expect = 3e-12
 Identities = 16/118 (13%), Positives = 38/118 (32%), Gaps = 15/118 (12%)

Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRG 86
           +  +D +  L +    ++ +  E      +A  ++G ++V   L EL             
Sbjct: 105 SSALDTLCLLLTSDEIVKVIQAENYQAFRLAA-ENGHLHVLNRLCELAPTEIMAMIQAEN 163

Query: 87  LEP-----------TVRLLLSCGAN---ALVRNDDCHTALGVARIKGHINVVRAIESH 130
                          +  L         A+++ ++ +     A  +GH NV+  +   
Sbjct: 164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC 221

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 53.4 bits (128), Expect = 7e-08
 Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 6/109 (5%)

Query: 28  GDVDAIRALRSQGASLEWMD--KEGKTPLIVACMDSGLINVAKTLIELGANIN-AYRPAK 84
           G +  +  L     +        E       A +  G  NV   L++    +  A     
Sbjct: 174 GHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEF 233

Query: 85  RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY 133
              E  V   ++   N L    + H A  ++   G  ++V   E    +
Sbjct: 234 EYGEKYVNPFIARHVNRLK---EMHDAFKLSNPDGVFDLVTKSECLQGF 279

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 12/84 (14%)

Query: 28  GDVDAIRALRS-----QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANI----- 77
             +D IR L S       A    +  +    L +A    G       L+ + + +     
Sbjct: 292 VLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALR-LGNQGACALLLSIPSVLALTKA 350

Query: 78  -NAYRPAKRGLEPTVRLLLSCGAN 100
            N Y     G      + L    +
Sbjct: 351 NNYYINETGGRLDLRAVALEHHHH 374

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 17/114 (14%)

Query: 22  YQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-- 79
              +     +AI        ++E      +   ++    +     AK L           
Sbjct: 39  LSLMTLSYKEAIHIFLPGTKNME------QVRQLLCLYYAHYNRNAKQLWSDAHKKGIKS 92

Query: 80  ----YRPAKRG----LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 125
               +  A  G    L+ T+ LLL+      V   + + A  +A   GH++V+ 
Sbjct: 93  EVICFVAAITGCSSALD-TLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLN 145

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 64.8 bits (159), Expect = 5e-12
 Identities = 20/117 (17%), Positives = 44/117 (37%), Gaps = 15/117 (12%)

Query: 28  GDVDAIRALRSQGASL---EWMDKEGKTPLIVACMDSGLINVAKTLIE--LGANINA--- 79
              +    L S+  ++   ++ D  G TP  +AC   G + V K+L +  L  ++N    
Sbjct: 47  QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS-VGNLEVVKSLYDRPLKPDLNKITN 105

Query: 80  ------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
                 +    +      + L+  GA+  +++      L  A   G + ++  +   
Sbjct: 106 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL 162

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 64.0 bits (157), Expect = 7e-12
 Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 15/104 (14%)

Query: 36  LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP------------A 83
           L S+ + L   D++G+ PL  +        +   L+    N+N                 
Sbjct: 22  LHSKPSLLLQKDQDGRIPLHWSVS-FQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80

Query: 84  KRGLEPTVRLLLS--CGANALVRNDDCHTALGVARIKGHINVVR 125
             G    V+ L       +     +   T L +A  K    V +
Sbjct: 81  SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 60.9 bits (149), Expect = 8e-11
 Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 12/93 (12%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINA---------YRPAKRGLEPTVRLLLSCGAN 100
              PL  ACM++    V + L    + +           +             LLS   N
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 101 ---ALVRNDDCHTALGVARIKGHINVVRAIESH 130
                  +D   T   +A   G++ VV+++   
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR 94

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 59.8 bits (146), Expect = 2e-10
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 15/115 (13%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGAN-INA-----YR 81
              +  + L   GAS+   DK  + PL  A    G + + + L  LG + +N      + 
Sbjct: 118 KWFEVSQFLIENGASVRIKDKFNQIPLHRAAS-VGSLKLIELLCGLGKSAVNWQDKQGWT 176

Query: 82  P----AKRGLEPTVRLLLS-CGANALVRNDDCHTALGVARIKGHINVVRAIESHI 131
           P       G      LL+   GA   + ++    A  VA    +  V +   +++
Sbjct: 177 PLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNV 228

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 16/108 (14%), Positives = 30/108 (27%), Gaps = 12/108 (11%)

Query: 28  GDVDAIRALRSQGASLEWMD-KEGKTPLIVA-CMDSGLINVAKTLIELGANINA------ 79
            D     AL   GA++      +G T          G  + A  L ++  ++        
Sbjct: 98  NDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAV 157

Query: 80  ---YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 124
              +  +    +  +          L R+    T    A + G    V
Sbjct: 158 YALWDYSAEFGD-ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 13/115 (11%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
           L+  +   +   +  L + GA++   D  G TPL  A        +   L++ GA I A 
Sbjct: 58  LHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAAS-CNDTVICMALVQHGAAIFAT 116

Query: 80  -----------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINV 123
                        P + G       L     +  + N     AL     +    +
Sbjct: 117 TLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDEL 171

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 13/110 (11%)

Query: 33  IRALRSQGASLEWMDKE---GKTPLIVACMDSGLINVAKTLIELGANINA---------Y 80
           +R++  +  S     +        L+ A + +G + V +  ++   + +          +
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAAL-TGELEVVQQAVKEMNDPSQPNEEGITALH 59

Query: 81  RPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
                     V  L++ GAN    +    T L  A       +  A+  H
Sbjct: 60  NAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQH 109

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 19/121 (15%)

Query: 28  GDVDAIRALRSQGA--------SLEWMDKEGKTPLIVACMDSGLINVAKTLI-ELGANIN 78
             V + + L  +GA          +    +G+T L  A      + + K L+ E G+N +
Sbjct: 249 DQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQ-VSNMPIVKYLVGEKGSNKD 307

Query: 79  A---------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 129
                        A+ G    V  L+  GA+    +   HTA  +A+   H N+V   + 
Sbjct: 308 KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 367

Query: 130 H 130
            
Sbjct: 368 C 368

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 60.7 bits (148), Expect = 3e-10
 Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 17/115 (14%)

Query: 27  AGDVDAIRALRSQGASLEWMDKEGKTPLIVACM-------DSGLINVAKTLIELGANINA 79
           AG       +  +  ++    +  +T L            +  +++ AK  I  GA++NA
Sbjct: 103 AGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA 161

Query: 80  ---------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 125
                               V  L+  GA+  + N    +AL  A       ++ 
Sbjct: 162 MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMV 216

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 18/120 (15%), Positives = 33/120 (27%), Gaps = 24/120 (20%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIE---LGANIN------ 78
                +  L   GA     +K  ++ L  A   +    +   ++    L  +I       
Sbjct: 177 RRRRLVAYLMKAGADPTIYNKSERSALHQAA-ANRDFGMMVYMLNSTKLKGDIEELDRNG 235

Query: 79  ------AYRPAKRGLEPTVRLLLSCGAN--------ALVRNDDCHTALGVARIKGHINVV 124
                       R    + +LL+  GA                  TAL  A    ++ +V
Sbjct: 236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIV 295

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 15/113 (13%), Positives = 30/113 (26%), Gaps = 18/113 (15%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           G+        +        + E    L      S    + + +     NI          
Sbjct: 72  GNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGS--YAITEPITRESVNIIDPRHNRTVL 129

Query: 80  YRPAKRGLEPTVRLLL--------SCGANALVRNDDCHTALGVARIKGHINVV 124
           +  A          L+        + GA+    + D +T L +A +     +V
Sbjct: 130 HWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLV 182

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 9/84 (10%), Positives = 20/84 (23%), Gaps = 2/84 (2%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRND 106
               +  L+ A  D G I   +  ++  +     +    G +       +          
Sbjct: 34  ITSSQHSLLEASYD-GYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEP 92

Query: 107 DCHTALGVARIKGHINVVRAIESH 130
           +    L      G   +   I   
Sbjct: 93  ESPIKLHTE-AAGSYAITEPITRE 115

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANI 77
           G ++ +  L  QGAS+E +D    T   +A   +   N+           
Sbjct: 324 GRIEVVMYLIQQGASVEAVDATDHTARQLAQ-ANNHHNIVDIFDRCRPER 372

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 61.1 bits (149), Expect = 6e-11
 Identities = 17/103 (16%), Positives = 33/103 (32%), Gaps = 11/103 (10%)

Query: 28  GDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-----YR 81
           G  D +  L +Q    L   +K G T L  A    G  ++ + L+  GA  +        
Sbjct: 117 GHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW-KGYADIVQLLLAKGARTDLRNIEKKL 175

Query: 82  P----AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH 120
                        ++      A   + N + +     + ++ H
Sbjct: 176 AFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 11/107 (10%)

Query: 34  RALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA---------YRPAK 84
           R        +    +    PL  A    G ++  +  ++    +N          Y    
Sbjct: 57  RTGLIPSNYVAEQAESIDNPLHEAAK-RGNLSWLRECLDNRVGVNGLDKAGSTALYWACH 115

Query: 85  RGLEPTVRLLLS-CGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
            G +  V +L +        +N    TAL  A  KG+ ++V+ + + 
Sbjct: 116 GGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK 162

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 57.6 bits (140), Expect = 9e-10
 Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 5/101 (4%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP----A 83
            +      L  +   + ++     T         G   +  +        +   P    A
Sbjct: 23  FEPRTPDELYIEEGDIIYITDMSDTNWWKGT-SKGRTGLIPSNYVAEQAESIDNPLHEAA 81

Query: 84  KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 124
           KRG    +R  L         +    TAL  A   GH ++V
Sbjct: 82  KRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIV 122

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 49.9 bits (120), Expect = 4e-07
 Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 15/88 (17%)

Query: 47  DKEGKTPLIVACMDSGLINVAKTLIELGANINA---------YRPAKRGLEPTVRLLLSC 97
            K G+  +  A            L     +I           ++   +G     R  L  
Sbjct: 9   VKPGQVKVFRALYT-FEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKG-----RTGLIP 62

Query: 98  GANALVRNDDCHTALGVARIKGHINVVR 125
                 + +     L  A  +G+++ +R
Sbjct: 63  SNYVAEQAESIDNPLHEAAKRGNLSWLR 90

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A Length = 345

 Score = 62.3 bits (149), Expect = 1e-10
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 446 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 495
           C +C +  V    +PCGH+  C  C   ++     CP+CR  I   +R +
Sbjct: 298 CKVCMDKEVSVVFIPCGHLVVCQECAPSLR----KCPICRGIIKGTVRTF 343

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 60.3 bits (146), Expect = 1e-10
 Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 10/112 (8%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           G  + +  L   G  +   D  G +PL +A   +G   + K L+  GA++NA        
Sbjct: 51  GHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS-AGXDEIVKALLVKGAHVNAVNQNGCTP 109

Query: 80  -YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
            +  A +       +LL  GAN   ++    TA+  A  KG++ +V  +  +
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 56.4 bits (136), Expect = 3e-09
 Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 10/112 (8%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
           G  + ++AL  +GA +  +++ G TPL  A        +A  L+E GAN +A        
Sbjct: 84  GXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK-NRHEIAVMLLEGGANPDAKDHYDATA 142

Query: 80  -YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
            +R A +G    V +LL   A+  +++ + +T L +A  +  +   + + + 
Sbjct: 143 MHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ 194

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 52.9 bits (127), Expect = 5e-08
 Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 12/129 (9%)

Query: 6   NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLIN 65
              + +   Q+    L+        +    L   GA+ +  D    T +  A    G + 
Sbjct: 95  KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK-GNLK 153

Query: 66  VAKTLIELGANINA---------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 116
           +   L+   A+ N          +           + L++ GA+  + N +  T L VA 
Sbjct: 154 MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA- 212

Query: 117 IKGHINVVR 125
            KG + ++ 
Sbjct: 213 -KGGLGLIL 220

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 10/90 (11%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINA---------YRPAKRGLEPTVRLLLSCGAN 100
                 +A     L  + + ++   +             +     G    V  LL  G  
Sbjct: 7   NIMICNLAYS-GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65

Query: 101 ALVRNDDCHTALGVARIKGHINVVRAIESH 130
              ++D   + L +A   G   +V+A+   
Sbjct: 66  VNDKDDAGWSPLHIAASAGXDEIVKALLVK 95

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 47.2 bits (112), Expect = 4e-06
 Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 10/103 (9%)

Query: 6   NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLIN 65
              N   +       +++    G++  +  L    AS    D EG TPL +AC D   + 
Sbjct: 128 GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC-DEERVE 186

Query: 66  VAKTLIELGANIN--------AYRPAKRGLEPTVRLLLSCGAN 100
            AK L+  GA+I           + AK GL   +   L+ G  
Sbjct: 187 EAKFLVTQGASIYIENKEEKTPLQVAKGGLG-LILKRLAEGEE 228

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 46.0 bits (109), Expect = 9e-06
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 6   NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLIN 65
              + + Q    +  L+       V+  + L +QGAS+   +KE KTPL VA    G + 
Sbjct: 161 YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA---KGGLG 217

Query: 66  VAKTLIELGANIN 78
           +    +  G   +
Sbjct: 218 LILKRLAEGEEAS 230

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 23/141 (16%), Positives = 38/141 (26%), Gaps = 42/141 (29%)

Query: 28  GDVDAIRALRSQGASLE-------------WMDKEGKTPLIVACMDSGLINVAKTLIELG 74
             +  ++ L   GA +                   G+ PL +A   +   +V   L+E  
Sbjct: 101 RSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAAC-TKQWDVVTYLLENP 159

Query: 75  ---ANINA-------------------------YRPAKRGLEPTVRLLLSCGANALVRND 106
              A++ A                               GL      L        + N 
Sbjct: 160 HQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNH 219

Query: 107 DCHTALGVARIKGHINVVRAI 127
              T L +A  +G I + R I
Sbjct: 220 QGLTPLKLAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 52.1 bits (125), Expect = 9e-08
 Identities = 25/150 (16%), Positives = 45/150 (30%), Gaps = 43/150 (28%)

Query: 19  ELLYQWVIAGDVDAIRAL----RSQGASLEW----MDKEGKTPLIVACMDS--GLINVAK 68
           + L+  V  G  + +  L    R     L          GKT L+ A ++   G+     
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 69  TLIELGANINAYRPA---------KRGLEP-----------TVRLLLSCGANALVRNDDC 108
            L+++  +    +P           +G               V+LL+  GA+  +R    
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

Query: 109 -------------HTALGVARIKGHINVVR 125
                           L +A      +VV 
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACTKQWDVVT 153

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 49.4 bits (118), Expect = 8e-07
 Identities = 20/155 (12%), Positives = 35/155 (22%), Gaps = 53/155 (34%)

Query: 28  GDVDAIRALRSQGASLEWM-----------DKEGKTPLIVACMDSGLINVAKTLIELGAN 76
           G    I  L                       +G + L +A      +   K L+E GA+
Sbjct: 57  GVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIE-KRSLQCVKLLVENGAD 115

Query: 77  INA-----------YRPAKRGLEP-----------TVRLLLSCG---------------- 98
           ++                  G  P            V  LL                   
Sbjct: 116 VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTV 175

Query: 99  ---ANALVRNDDCHTALGVARIKGHINVVRAIESH 130
                 +  N   ++AL +    G + +   +   
Sbjct: 176 LHALVMIADNSPENSALVIHMYDGLLQMGARLCPT 210

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
           G +     L       E  + +G TPL +A    G I + + +++   +  A
Sbjct: 199 GLLQMGARLCPTVQLEEISNHQGLTPLKLAA-KEGKIEIFRHILQREFSGAA 249

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 56.8 bits (138), Expect = 2e-09
 Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 28/127 (22%)

Query: 28  GDVDAIRALRSQGASLEWM-----DKEGKTPLIVACMDSGLINVAKTLIELGANINA--- 79
            +++A   L      L +        EG+T L +A + +  +N+ + L+  GA+++A   
Sbjct: 48  DNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVI-NQNVNLVRALLARGASVSARAT 106

Query: 80  ---------------YRP----AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH 120
                            P    A  G E  VRLL+  GA+   ++   +T L +  ++ +
Sbjct: 107 GSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPN 166

Query: 121 INVVRAI 127
                 +
Sbjct: 167 KTFACQM 173

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 22/122 (18%), Positives = 35/122 (28%), Gaps = 28/122 (22%)

Query: 36  LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP------------- 82
           L+ +G  +      G+T L +A +    +  A  L+E    +                  
Sbjct: 23  LKFEGCEVHQRGAMGETALHIAAL-YDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81

Query: 83  -AKRGLEPTVRLLLSCGANALVRNDDCH-------------TALGVARIKGHINVVRAIE 128
                    VR LL+ GA+   R                    L  A   G   +VR + 
Sbjct: 82  AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI 141

Query: 129 SH 130
            H
Sbjct: 142 EH 143

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 52.2 bits (126), Expect = 6e-08
 Identities = 17/95 (17%), Positives = 39/95 (41%), Gaps = 14/95 (14%)

Query: 50  GKTPLIVACMDSGLINVAKTLIELGANINA---------YRPAKRGLEPTVRLLLSCGAN 100
            ++PL++A  ++ +  ++K L   G  ++          +  A         +L+     
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 101 AL-----VRNDDCHTALGVARIKGHINVVRAIESH 130
            +         +  TAL +A I  ++N+VRA+ + 
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLAR 97

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 20/92 (21%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL----GANINA---- 79
           G  + +R L   GA +   D  G T L +  +       A  +  L        +     
Sbjct: 132 GSEEIVRLLIEHGADIRAQDSLGNTVLHILIL-QPNKTFACQMYNLLLSYDGGDHLKSLE 190

Query: 80  YRPAKRGLEP-----------TVRLLLSCGAN 100
             P  +GL P             + L+    +
Sbjct: 191 LVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH 222

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 57.9 bits (139), Expect = 3e-09
 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 15/101 (14%)

Query: 408 EGPIRYPSVENSVADL----------HLPVLEDGVSASNVKDDGSSSSCVICWEAPVEGA 457
           EG   +P   N   DL          H+ V ++       +   +   C IC E   +  
Sbjct: 288 EGFYLFPDGRNQNPDLTGLCEPTPQDHIKVTQEQYELYC-EMGSTFQLCKICAENDKDVK 346

Query: 458 CVPCGHMAGCMSCLSE-IKAKKGDCPVCRTKI--NQVIRLY 495
             PCGH+  C SCL+   +++   CP CR +I   + I + 
Sbjct: 347 IEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPIVVD 386

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 51.4 bits (123), Expect = 8e-09
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 433 SASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN 489
           S+ N     +   C IC +  V    +PC H+  C  C+         C +CR +I 
Sbjct: 5   SSGNTAPSLTVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIP 60

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 49.4 bits (118), Expect = 3e-08
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 441 GSSSSCVICWEAPVEGACV-------PCGHMAGCMSCLSEIKAKKGDCPVCRTKI--NQV 491
           G+  SC IC +   E            CGH+  C  CL +       CP CR KI   + 
Sbjct: 1   GAMVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRY 59

Query: 492 IRLY 495
             +Y
Sbjct: 60  HPIY 63

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 49.5 bits (118), Expect = 5e-08
 Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 1/59 (1%)

Query: 433 SASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQV 491
           S+   +++     C IC +A        C H   C SC  E       C +C      +
Sbjct: 5   SSGGSEEEEIPFRCFICRQAFQNPVVTKCRHYF-CESCALEHFRATPRCYICDQPTGGI 62

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 53.2 bits (128), Expect = 5e-08
 Identities = 23/136 (16%), Positives = 37/136 (27%), Gaps = 38/136 (27%)

Query: 28  GDVDAIRALRSQGASLEWM-----------DKEGKTPLIVACMDSGLINVAKTLIELGAN 76
           G  D I  L       + +             +G+T L +A      + +   L+E GA+
Sbjct: 68  GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIE-RRNMTLVTLLVENGAD 126

Query: 77  INA-------------------YRP----AKRGLEPTVRLLLSCG---ANALVRNDDCHT 110
           + A                     P    A       V+ LL      A+   R+   +T
Sbjct: 127 VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNT 186

Query: 111 ALGVARIKGHINVVRA 126
            L          V   
Sbjct: 187 VLHALVEVADNTVDNT 202

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 17/118 (14%), Positives = 31/118 (26%), Gaps = 30/118 (25%)

Query: 38  SQGASLEWMDKEGKTPLIVACMD------SGLINVAKTLIELGANINAYRP--------- 82
           S  A  +      +  +  A           L+   +   +   +     P         
Sbjct: 1   SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLK 60

Query: 83  ----AKRGLEPTVRLLLSCGA---------NALVRNDDC--HTALGVARIKGHINVVR 125
                  G   T+ LLL             NA   +      TAL +A  + ++ +V 
Sbjct: 61  AMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVT 118

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 21/142 (14%), Positives = 39/142 (27%), Gaps = 43/142 (30%)

Query: 28  GDVDAIRALRSQGASLEWMDKE--------------GKTPLIVACMDSGLINVAKTLIEL 73
            ++  +  L   GA ++                   G+ PL +A   +  + + K L++ 
Sbjct: 112 RNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAAC-TNQLAIVKFLLQN 170

Query: 74  G---ANINA-------------------------YRPAKRGLEPTVRLLLSCGANALVRN 105
               A+I+A                                +      L        + N
Sbjct: 171 SWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITN 230

Query: 106 DDCHTALGVARIKGHINVVRAI 127
               T L +A   G I V+  I
Sbjct: 231 RKGLTPLALAASSGKIGVLAYI 252

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 19/137 (13%), Positives = 39/137 (28%), Gaps = 10/137 (7%)

Query: 2   GQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDS 61
                 +N ++Q+   +  L + +     +   +L +  ++                 DS
Sbjct: 48  ALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDS 107

Query: 62  GLINVAKTLIELGANINA------YRP----AKRGLEPTVRLLLSCGANALVRNDDCHTA 111
            L  V         N+N         P            V+ L+  G+N L  ++   + 
Sbjct: 108 LLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESC 167

Query: 112 LGVARIKGHINVVRAIE 128
           L  A    +       E
Sbjct: 168 LVKAVKSVNNYDSGTFE 184

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 47.7 bits (113), Expect = 4e-06
 Identities = 11/127 (8%), Positives = 33/127 (25%), Gaps = 24/127 (18%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDS---GLINVAKTLIELGANINA----- 79
            +++ ++ L   G++  + D  G++ L+ A               L  L   +       
Sbjct: 142 ANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMN 201

Query: 80  ----------------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINV 123
                              AK  L+  +  ++      +    +   +    +     + 
Sbjct: 202 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDS 261

Query: 124 VRAIESH 130
           +      
Sbjct: 262 ILENLDL 268

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 47.9 bits (114), Expect = 1e-07
 Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 10/71 (14%)

Query: 434 ASNVKDDGSSSSCVICWE-------APVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRT 486
            +       + SC IC +                CGH+  C  CL +       CP CR 
Sbjct: 1   GTTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRK 59

Query: 487 KI--NQVIRLY 495
           KI   +   +Y
Sbjct: 60  KINHKRYHPIY 70

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 49.7 bits (118), Expect = 2e-07
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 445 SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 497
            C+IC E  +E   + C H   C  C++E   +K +CP+CR  I        +
Sbjct: 66  QCIICSEYFIEAVTLNCAHSF-CSYCINEWMKRKIECPICRKDIKSKTYSLVL 117

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 45.5 bits (108), Expect = 7e-07
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 442 SSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIR 493
            +  C IC E P   +   PC H   C  C++    +   CP+C+  +  V+ 
Sbjct: 4   VAERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVH 55

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 437 VKDDGSSSSCVICWEAPVEGACVP-CGHMAGCMSCLSE-IKAKKGDCPVCRTKINQ 490
           V+       C IC E   +    P C  +  C SC+   +  ++  CP CR  +  
Sbjct: 16  VESIAEVFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL 70

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 433 SASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKG-DCPVCRTKINQV 491
              +     S   C IC E  VE   +PC H   C  C      K    CP CR +++  
Sbjct: 5   LPKDAIPSLSECQCGICMEILVEPVTLPCNHTL-CKPCFQSTVEKASLCCPFCRRRVSSW 63

Query: 492 IRLYT 496
            R +T
Sbjct: 64  TRYHT 68

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 43.4 bits (102), Expect = 5e-06
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 9/65 (13%)

Query: 433 SASNVKDDGSSSSCVICWEAPVEGACV-------PCGHMAGCMSCLSEIKAKKGDCPVCR 485
           S + ++  G+ S C IC +   E            CGH+  C  CL +       CP CR
Sbjct: 6   SGTGLRPSGTVS-CPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCR 63

Query: 486 TKINQ 490
            KIN 
Sbjct: 64  KKINH 68

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 43.2 bits (102), Expect = 5e-06
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 2/46 (4%)

Query: 446 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGD-CPVCRTKINQ 490
           C  C           CGH   C SC++ + +     C  C+  I +
Sbjct: 18  CEKCHLVLCSPKQTECGHRF-CESCMAALLSSSSPKCTACQESIVK 62

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 22/142 (15%), Positives = 47/142 (33%), Gaps = 17/142 (11%)

Query: 8   MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDK------EGKTPLIVACM-- 59
             +H    +K   L + V   D+  +    + G  L             +T L +A    
Sbjct: 121 RKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSV 180

Query: 60  DSGLINVAKTLIELGANINAYRP---------AKRGLEPTVRLLLSCGANALVRNDDCHT 110
           D   +++   L++   N++                     ++LLL   A+  + N+   T
Sbjct: 181 DRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGET 240

Query: 111 ALGVARIKGHINVVRAIESHIC 132
            L +A+   H +    +   + 
Sbjct: 241 PLDIAKRLKHEHCEELLTQALS 262

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 38/263 (14%), Positives = 67/263 (25%), Gaps = 94/263 (35%)

Query: 45  WMDKEGKTPLIVACMD----SGLINV----AKTLI---------ELGANINAYRP---AK 84
              K  +  L+V  +     +   N      K L+          L A    +       
Sbjct: 238 LKSKPYENCLLV--LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 85  RGLEP--TVRLLLSCGANALVRNDDCHTALGVARIKGH---INVVRA-IESHICYFCGWL 138
             L P     LLL        R  D    L    +  +   ++++   I   +  +  W 
Sbjct: 296 MTLTPDEVKSLLLKY---LDCRPQD----LPREVLTTNPRRLSIIAESIRDGLATWDNWK 348

Query: 139 REFYGP------SFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFE-LVIYPSLQDVQ-P 190
                       S L  L P    +                   F+ L ++P       P
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRK------------------MFDRLSVFP--PSAHIP 388

Query: 191 RAVIA-LWKAKIDE------PKFH-------QPDPS-LTIYDQATKIR------------ 223
             +++ +W   I         K H       QP  S ++I     +++            
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448

Query: 224 ----YKFASANEGDKHQLQWLDN 242
               Y      + D     +LD 
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQ 471

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 44.0 bits (104), Expect = 5e-05
 Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 11/90 (12%)

Query: 41  ASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGAN 100
           +    +   G+T L +A       +  + L+E GA+++A            R       +
Sbjct: 84  SPFRDVYYRGQTALHIAIE-RRCKHYVELLVEKGADVHA----------QARGRFFQPKD 132

Query: 101 ALVRNDDCHTALGVARIKGHINVVRAIESH 130
                      L +A      ++V  +  +
Sbjct: 133 EGGYFYFGELPLSLAACTNQPHIVHYLTEN 162

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 43.6 bits (103), Expect = 7e-05
 Identities = 23/145 (15%), Positives = 40/145 (27%), Gaps = 43/145 (29%)

Query: 28  GDVDAIRALRSQGA--------------SLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73
                +  L  +GA                      G+ PL +A   +   ++   L E 
Sbjct: 104 RCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAAC-TNQPHIVHYLTEN 162

Query: 74  G---ANINA------------------YRPAKRGLEPTVRLLLSCGAN-------ALVRN 105
           G   A++                     R   + +     LLL   A          + N
Sbjct: 163 GHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLN 222

Query: 106 DDCHTALGVARIKGHINVVRAIESH 130
           +D  + L +A   G I + + I   
Sbjct: 223 NDGLSPLMMAAKTGKIGIFQHIIRR 247

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 41.9 bits (98), Expect = 5e-05
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 445 SCVICWEAPVEGACVPCGHMAGCMSCLSE-IKAKKGDCPVCRTKINQ 490
            C+ C E         C H   C  CL    +A+   CP CR  + +
Sbjct: 54  QCICCQELVFRPITTVCQHNV-CKDCLDRSFRAQVFSCPACRYDLGR 99

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 32/128 (25%), Positives = 41/128 (32%), Gaps = 12/128 (9%)

Query: 367 KQSQDVQTLANPAPFSQISNRNSSSASAAPSAPPIPEVESGEGPIRYPSVENSVADLHLP 426
                   L  P      S    +S SA          +  +  IR       + D  L 
Sbjct: 6   HHHHHSSGL-VPRGSPSASKVYKASDSAEAIEAFQLTPQQ-QHLIREDCQNQKLWDEVLS 63

Query: 427 VLEDGVSASNVKDDGSSSSCVICWE---APVEGACVPCGHMAGCMSCLSE-IKAKKGDCP 482
            L +G +   +K    S  CV C E    PV      C H   C  CL    KA+   CP
Sbjct: 64  HLVEGPNF--LKKLEQSFMCVCCQELVYQPVT---TECFHNV-CKDCLQRSFKAQVFSCP 117

Query: 483 VCRTKINQ 490
            CR  + Q
Sbjct: 118 ACRHDLGQ 125

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 445 SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGD-CPVCRTKIN 489
            C IC  A  E    PCGH   C +C+ +     G  CPV    + 
Sbjct: 20  ECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILL 64

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 6/61 (9%)

Query: 433 SASNVKDDGSSSSCVICWE---APVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN 489
           S+ N+ +      C IC              C H   C SC+         CP C   ++
Sbjct: 5   SSGNLSELTPYILCSICKGYLIDAT--TITECLH-TFCKSCIVRHFYYSNRCPKCNIVVH 61

Query: 490 Q 490
           Q
Sbjct: 62  Q 62

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 6/62 (9%)

Query: 434 ASNVKDDGSSSSCVICWE----APVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKI 488
           + +         C +C E      +      CG+   C  C   I+    G CP CR   
Sbjct: 2   SRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQI-CRFCWHRIRTDENGLCPACRKPY 60

Query: 489 NQ 490
            +
Sbjct: 61  PE 62

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 6/49 (12%)

Query: 445 SCVICWE---APVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 490
            C IC+E     +      C H   C  C+ +  + K  CP C   + +
Sbjct: 24  RCGICFEYFNIAM--IIPQCSH-NYCSLCIRKFLSYKTQCPTCCVTVTE 69

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 10/71 (14%)

Query: 433 SASNVKDDGSSSSCVICWEAPVEGACVP----CGHMAGCMSCLSEIKAKKGD---CPVCR 485
           S+ N+        C IC E+  E    P    CGH   C  CL ++ A   +   CP C 
Sbjct: 5   SSGNLDALREVLECPICMESFTEEQLRPKLLHCGHTI-CRQCLEKLLASSINGVRCPFCS 63

Query: 486 --TKINQVIRL 494
             T+I  + +L
Sbjct: 64  KITRITSLTQL 74

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 446 CVICWE---APVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 490
           CV+C            + C H   C +C+         CP+C  ++++
Sbjct: 18  CVLCGGYFIDAT--TIIECLHSF-CKTCIVRYLETSKYCPICDVQVHK 62

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 20/117 (17%), Positives = 39/117 (33%), Gaps = 17/117 (14%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKE------GKTPLIVACM--DSGLINVAKTLIELGAN 76
           +   D+ ++    + G                +  L +A    +   + +   +I+ G +
Sbjct: 159 ICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH 218

Query: 77  INAYRP---------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 124
           ++A            A       ++LLL   A     N+   TAL +AR K H    
Sbjct: 219 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECE 275

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 37.4 bits (87), Expect = 6e-04
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 433 SASNVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 488
           S+  VK       C IC +       +PC H + C  C+ +   +  +CP+CR ++
Sbjct: 5   SSGRVKQLTDEEECCICMD-GRADLILPCAH-SFCQKCIDKWSDRHRNCPICRLQM 58

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 39.7 bits (92), Expect = 7e-04
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 445 SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGD-CPVCRTKINQ 490
            C IC  A  E    PCGH   C +C+ +     G  CPV    + +
Sbjct: 20  ECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE 65

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 37.1 bits (86), Expect = 8e-04
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 433 SASNVKDDGSSSSCVICWEAPVEGACV---PCGHMAGCMSCLSEIKAKKGDCPVCRTKI 488
           S+  VK+      C +C E       +   PC H      CL +    +  CP+C   +
Sbjct: 5   SSGKVKELNLHELCAVCLEDFKPRDELGICPCKHAF-HRKCLIKWLEVRKVCPLCNMPV 62

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 40.5 bits (94), Expect = 9e-04
 Identities = 24/131 (18%), Positives = 43/131 (32%), Gaps = 12/131 (9%)

Query: 6   NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWM--DKEGKTPLIVACMDSGL 63
                         L         +  +    + GA + W+   ++  TPLI A   + L
Sbjct: 189 PPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSL 248

Query: 64  INVAKTLIELGANINAYRP---------AKRGLEPTVRLLLSCGANALVRNDDCHTALGV 114
           +     L++ GAN+N                G      L L  GA+   R+ +    L +
Sbjct: 249 LACE-FLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTI 307

Query: 115 ARIKGHINVVR 125
           A    + ++V 
Sbjct: 308 AMETANADIVT 318

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	497
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.98
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.98
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.98
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.98
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.97
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.97
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.97
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.97
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.97
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.97
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.97
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.97
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.97
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.97
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.96
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.96
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.96
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.96
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.96
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.96
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.96
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.96
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.96
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.96
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.96
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.96
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.96
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.96
2etb_A	256	Transient receptor potential cation channel subfam	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
2pnn_A	273	Transient receptor potential cation channel subfa	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.95
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.95
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.95
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.95
2rfa_A	232	Transient receptor potential cation channel subfa	99.94
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.94
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.94
2etb_A	256	Transient receptor potential cation channel subfam	99.94
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.93
2pnn_A	273	Transient receptor potential cation channel subfa	99.93
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.93
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.92
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.92
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.91
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.9
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.9
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.89
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.89
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.89
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.89
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.89
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.88
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.88
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.87
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.87
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.87
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.87
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.86
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.86
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.86
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.86
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.85
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.85
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.85
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.85
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.85
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.84
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.83
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.83
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.82
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.82
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.82
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.81
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.8
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.8
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.79
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.78
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.78
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.76
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.75
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.74
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.74
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.72
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.71
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.7
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.68
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	99.41
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	99.39
2ea5_A	68	Cell growth regulator with ring finger domain prot	99.32
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	99.18
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.13
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.11
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.08
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	99.07
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.04
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.04
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.03
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.02
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	98.99
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.99
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.99
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	98.98
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	98.97
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	98.95
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.93
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	98.93
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	98.92
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.91
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	98.91
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.91
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	98.9
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.9
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.89
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	98.88
2ect_A	78	Ring finger protein 126; metal binding protein, st	98.86
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.85
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.85
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.84
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.83
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.8
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	98.8
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.77
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	98.77
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.75
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	98.74
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.73
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.71
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.71
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.69
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.69
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.68
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.67
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.67
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.64
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.64
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.64
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.63
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.6
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.6
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.59
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.55
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.52
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.42
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.4
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.4
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.35
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.35
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.34
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.19
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.11
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	97.98
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	97.92
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	97.8
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.65
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	97.34
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	97.1
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	96.91
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	94.57
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	89.95
3nw0_A	238	Non-structural maintenance of chromosomes element	89.41
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	88.71

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.2e-32  Score=261.93  Aligned_cols=218  Identities=18%  Similarity=0.101  Sum_probs=166.4

Q ss_pred             hhhhcCCCchHHHHHHHcC-------------CHHHHHHHHHcCCCccc-cCCCCChHHHHHHHhCCcHHHHHHHHHcCC
Q 010920           10 QHQQRQSKDELLYQWVIAG-------------DVDAIRALRSQGASLEW-MDKEGKTPLIVACMDSGLINVAKTLIELGA   75 (497)
Q Consensus        10 ~~~~~~~G~T~Lh~Aa~~g-------------~~~~v~~Ll~~ga~~n~-~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga   75 (497)
                      ...+|..|.||||+|+..|             +.+++++|++.|++++. .|..|.||||+|+..|+ .+++++|+++|+
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~-~~~v~~Ll~~g~   81 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR-SDAAKRLLEASA   81 (253)
T ss_dssp             -------------------------------------------------CCCTTSCCHHHHHHHTTC-HHHHHHHHHTTC
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCC-HHHHHHHHHcCC
Confidence            3456779999999999987             99999999999999865 48899999999999855 999999999999


Q ss_pred             CCCCcCc---------ccCCCHHHHHHHHhCCC-CCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCC
Q 010920           76 NINAYRP---------AKRGLEPTVRLLLSCGA-NALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPS  145 (497)
Q Consensus        76 ~~~~~~~---------~~~g~~~~v~~Ll~~ga-~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T  145 (497)
                      +++..+.         +..|+.+++++|+++++ +++..+..|.||||+|+..|+.+++++|+++|++++  ..|..|.|
T Consensus        82 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~d~~g~t  159 (253)
T 1yyh_A           82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN--AVDDLGKS  159 (253)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTT--CBCTTSCB
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCC--CcCCCCCC
Confidence            9998765         77899999999999987 899999999999999999999999999999999999  89999999


Q ss_pred             HHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHH--HhhcCCCCCCCCCCChHHHHHHhCChhH
Q 010920          146 FLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIA--LWKAKIDEPKFHQPDPSLTIYDQATKIR  223 (497)
Q Consensus       146 ~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~~~~g~~pl~~a~~~~~~~~  223 (497)
                      ||| +|+..++.+++++|+++|++.+..+..+.++++.+...++...+..  ..+++++..+..|.||+++|+.+++.+.
T Consensus       160 ~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i  238 (253)
T 1yyh_A          160 ALH-WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDI  238 (253)
T ss_dssp             HHH-HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHH-HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHH
Confidence            999 9999999999999999999999888889999999987777655544  4888999999999999999999999999


Q ss_pred             HHHHHhCC
Q 010920          224 YKFASANE  231 (497)
Q Consensus       224 ~~~l~~~~  231 (497)
                      ++++....
T Consensus       239 ~~~l~~~~  246 (253)
T 1yyh_A          239 VRLLDLEH  246 (253)
T ss_dssp             HHHHHC--
T ss_pred             HHHHHHHh
Confidence            99887543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.98  E-value=1.3e-31  Score=251.61  Aligned_cols=210  Identities=19%  Similarity=0.166  Sum_probs=193.7

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------   82 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------   82 (497)
                      .++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..| +.+++++|+++|++++..+.         
T Consensus         6 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   84 (237)
T 3b7b_A            6 MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENN-HLEAVKYLIKAGALVDPKDAEGSTCLHLA   84 (237)
T ss_dssp             CSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHTTTCCCCCCCTTSCCHHHHH
T ss_pred             cccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhC-CHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Confidence            45779999999999999999999999999999999999999999999985 59999999999999988765         


Q ss_pred             ccCCCHHHHHHHHhCC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 010920           83 AKRGLEPTVRLLLSCG-ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV  161 (497)
Q Consensus        83 ~~~g~~~~v~~Ll~~g-a~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~  161 (497)
                      +..|+.+++++|+++| ++++..+..|.||||+|+..|+.+++++|+++|++++  ..+..|.|||| +|+..++.++++
T Consensus        85 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~~~  161 (237)
T 3b7b_A           85 AKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN--IRDNEENICLH-WAAFSGCVDIAE  161 (237)
T ss_dssp             HHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHCCHHHHH
T ss_pred             HHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--ccCCCCCCHHH-HHHHCCCHHHHH
Confidence            8889999999999998 8999999999999999999999999999999999999  89999999999 999999999999


Q ss_pred             HhhhCCCCCCCCCcccccccccCCcCcCHHHHHHH--hhcCCCCCCCCCCChHHHHHHhCChhHHH
Q 010920          162 VVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL--WKAKIDEPKFHQPDPSLTIYDQATKIRYK  225 (497)
Q Consensus       162 ~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~g~~pl~~a~~~~~~~~~~  225 (497)
                      +|+++|++.+..+..+.++++.+...+....+..+  .+++++..+..|.||+++|+.++....+.
T Consensus       162 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~  227 (237)
T 3b7b_A          162 ILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSAL  227 (237)
T ss_dssp             HHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHH
T ss_pred             HHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999988888899999999988877665444  88899999999999999999988765443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.98  E-value=5.6e-32  Score=271.19  Aligned_cols=221  Identities=13%  Similarity=0.036  Sum_probs=201.3

Q ss_pred             hhhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-------
Q 010920           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP-------   82 (497)
Q Consensus        10 ~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~-------   82 (497)
                      ...+|..|.||||+||..|+.++|++|+++|++++.+|..|.||||+|+..| +.++|++|+++|++++..+.       
T Consensus        13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~g~t~L~~A   91 (364)
T 3ljn_A           13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG-CVDTAKYLASVGEVHSLWHGQKPIHLA   91 (364)
T ss_dssp             ---CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHC-CHHHHHHHHHHCCCCCCBTTBCHHHHH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcC-CHHHHHHHHHCCCCccccCCCCHHHHH
Confidence            3445778999999999999999999999999999999999999999999995 59999999999998888555       


Q ss_pred             ccCCCHHHHHHHHhC----CCCCcc-----------------cCCCCCCHHHHHHHcC--CHHHHHHHHHCCCccccccc
Q 010920           83 AKRGLEPTVRLLLSC----GANALV-----------------RNDDCHTALGVARIKG--HINVVRAIESHICYFCGWLR  139 (497)
Q Consensus        83 ~~~g~~~~v~~Ll~~----ga~~~~-----------------~~~~g~T~Lh~A~~~g--~~~~v~~Ll~~g~~i~~~~~  139 (497)
                      +..|+.+++++|+++    |++++.                 .+..|.||||+|+..|  +.+++++|+++|++++  ..
T Consensus        92 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~--~~  169 (364)
T 3ljn_A           92 VMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT--AK  169 (364)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT--CC
T ss_pred             HHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCc--cc
Confidence            889999999999998    888777                 8889999999999999  9999999999999999  89


Q ss_pred             ccCCCCHHHHHhhhcCCHHHHHHhhhCCCC-----CCCCCcccccccccCCcCcCHHHHHHH--hhcCCCCCCCCCCChH
Q 010920          140 EFYGPSFLEALAPQLMSRKIWVVVIPCGTA-----NPSKPLRFELVIYPSLQDVQPRAVIAL--WKAKIDEPKFHQPDPS  212 (497)
Q Consensus       140 ~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~-----~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~g~~pl  212 (497)
                      |..|.|||| +|+..|+.+++++|+++|++     .+..+..+.++++.+...++...+..|  .+++++..+..|.|||
T Consensus       170 d~~g~t~L~-~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL  248 (364)
T 3ljn_A          170 DKADETPLM-RAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPL  248 (364)
T ss_dssp             CTTSCCHHH-HHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHH
T ss_pred             CCCCCCHHH-HHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            999999999 99999999999999999998     777777899999999988887666555  8889999999999999


Q ss_pred             HHHHHhCChhHHHHHHhCCCCH
Q 010920          213 LTIYDQATKIRYKFASANEGDK  234 (497)
Q Consensus       213 ~~a~~~~~~~~~~~l~~~~~~~  234 (497)
                      ++|+..++...+++|.+...+.
T Consensus       249 ~~A~~~g~~~~v~~Ll~~~~~~  270 (364)
T 3ljn_A          249 YLSVRAAMVLLTKELLQKTDVF  270 (364)
T ss_dssp             HHHHHTCCHHHHHHHHHHSCHH
T ss_pred             HHHHHhChHHHHHHHHHcCCch
Confidence            9999999999999998775443

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.98  E-value=9.4e-32  Score=258.99  Aligned_cols=203  Identities=18%  Similarity=0.121  Sum_probs=171.9

Q ss_pred             hcCCCchHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-------
Q 010920           13 QRQSKDELLYQWVIAGDVDAIRALRSQGAS---LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP-------   82 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~---~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~-------   82 (497)
                      ++..|.||||+|++.|+.++|++|+++|++   ++.+|..|.||||+|+..| +.+++++|+++|++++..+.       
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~ga~~~~~~~~g~tpL~   83 (282)
T 1oy3_D            5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG-EASTVEKLYAAGAGVLVAERGGHTALH   83 (282)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHT-CHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            567999999999999999999999999988   8899999999999999995 59999999999999998765       


Q ss_pred             --ccCCCHHHHHHHHhCCCC-----------------------------------------------CcccCCCCCCHHH
Q 010920           83 --AKRGLEPTVRLLLSCGAN-----------------------------------------------ALVRNDDCHTALG  113 (497)
Q Consensus        83 --~~~g~~~~v~~Ll~~ga~-----------------------------------------------~~~~~~~g~T~Lh  113 (497)
                        +..|+.+++++|+++|++                                               ++.++..|.||||
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  163 (282)
T 1oy3_D           84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH  163 (282)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred             HHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHH
Confidence              788999999999998765                                               6778889999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCccccccccc-CCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHH
Q 010920          114 VARIKGHINVVRAIESHICYFCGWLREF-YGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRA  192 (497)
Q Consensus       114 ~A~~~g~~~~v~~Ll~~g~~i~~~~~~~-~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~  192 (497)
                      +|+..|+.+++++|+++|++++  ..+. .|.|||| +|+..++.+++++|+++|++.+.++..+.++++.+...++...
T Consensus       164 ~A~~~g~~~~v~~Ll~~g~~~~--~~~~~~g~tpL~-~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~  240 (282)
T 1oy3_D          164 VAVIHKDAEMVRLLRDAGADLN--KPEPTCGRTPLH-LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPIL  240 (282)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTT--CCCTTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCC--CCCCCCCcCHHH-HHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHH
Confidence            9999999999999999999998  6664 5999999 9999999999999999999999888889999999988877655


Q ss_pred             HHH--HhhcCCCCCCCCCCChHHHHHHhC
Q 010920          193 VIA--LWKAKIDEPKFHQPDPSLTIYDQA  219 (497)
Q Consensus       193 ~~~--l~~~~~~~~~~~g~~pl~~a~~~~  219 (497)
                      +..  ..+++++..+..|.||++++....
T Consensus       241 v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          241 ARLLRAHGAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             HHHHHHTTCCCCCCC--------------
T ss_pred             HHHHHHcCCCcCcCCCcccccccccCCcc
Confidence            444  488999999999999999887754

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.98  E-value=1.4e-31  Score=259.28  Aligned_cols=213  Identities=17%  Similarity=0.141  Sum_probs=190.8

Q ss_pred             hhhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-------
Q 010920           10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP-------   82 (497)
Q Consensus        10 ~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~-------   82 (497)
                      ...++..|.||||+|+..|+.++|++|++.|++++.+|..|.||||+|+..| +.+++++|+++|++++..+.       
T Consensus        52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~ga~~~~~~~~g~t~L~  130 (285)
T 3d9h_A           52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGG-HLSCVKILLKHGAQVNGVTADWHTPLF  130 (285)
T ss_dssp             TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTT-CHHHHHHHHHTTCCSSCCCTTCCCHHH
T ss_pred             ccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCC-cHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            3446889999999999999999999999999999999999999999999985 59999999999999998765       


Q ss_pred             --ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHH
Q 010920           83 --AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIW  160 (497)
Q Consensus        83 --~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv  160 (497)
                        +..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++
T Consensus       131 ~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~d~~g~t~L~-~A~~~~~~~~v  206 (285)
T 3d9h_A          131 NACVSGSWDCVNLLLQHGASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGNID--HKISHLGTPLY-LACENQQRACV  206 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSSCS-CTTSCHHHHHHHHTCHHHHHHHHHTTCCTT--CCBTTTBCHHH-HHHHTTCHHHH
T ss_pred             HHHHcCHHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHcCcHHHH
Confidence              7889999999999999998754 459999999999999999999999999999  89999999999 99999999999


Q ss_pred             HHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHH--hhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhC
Q 010920          161 VVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL--WKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN  230 (497)
Q Consensus       161 ~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~  230 (497)
                      ++|+++|++.+. +..+.++++.+...++...+..|  .+++++..+..|.|||++|+.  ....+++|...
T Consensus       207 ~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~--~~~~~~~Ll~~  275 (285)
T 3d9h_A          207 KKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPP--ESPLAQLFLER  275 (285)
T ss_dssp             HHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCT--TSHHHHHHHHH
T ss_pred             HHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcC--ccHHHHHHHHh
Confidence            999999999875 55688999999888877655444  889999999999999999993  34566666654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.97  E-value=8.4e-32  Score=253.29  Aligned_cols=215  Identities=20%  Similarity=0.132  Sum_probs=191.7

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHH----cCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-----
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRS----QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP-----   82 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~----~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~-----   82 (497)
                      .+|.+|.||||+|++.|+.++|++|++    .|++++.+|..|.||||+|+..| +.+++++|+++|++++..+.     
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~   82 (241)
T 1k1a_A            4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITT-LPSVVRLLVTAGASPMALDRHGQTA   82 (241)
T ss_dssp             ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcC-CHHHHHHHHHcCCCccccCCCCCCH
Confidence            457799999999999999999999997    78999999999999999999985 59999999999999988765     


Q ss_pred             ----ccCCCHHHHHHHHhCCC----CCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccc-cCCCCHHHHHhhh
Q 010920           83 ----AKRGLEPTVRLLLSCGA----NALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE-FYGPSFLEALAPQ  153 (497)
Q Consensus        83 ----~~~g~~~~v~~Ll~~ga----~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~-~~G~T~Lh~~A~~  153 (497)
                          +..|+.+++++|+++++    +++..+..|.||||+|+..|+.+++++|+++|++++  ..+ ..|.|||| +|+.
T Consensus        83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~~g~t~L~-~A~~  159 (241)
T 1k1a_A           83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID--AVDIKSGRSPLI-HAVE  159 (241)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTTCCCHHH-HHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcc--cccccCCCcHHH-HHHH
Confidence                78899999999999987    888899999999999999999999999999999998  677 88999999 9999


Q ss_pred             cCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHH--hhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhC
Q 010920          154 LMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL--WKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN  230 (497)
Q Consensus       154 ~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~  230 (497)
                      .++.+++++|+++|++.+..+..+.++++.+...+....+..+  .+++++..+..|.||+++|+..+..+.++.+...
T Consensus       160 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~  238 (241)
T 1k1a_A          160 NNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATR  238 (241)
T ss_dssp             TTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC----
T ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccC
Confidence            9999999999999999998888899999999887776555444  8889999999999999999998888887766543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.97  E-value=4.3e-31  Score=261.86  Aligned_cols=227  Identities=20%  Similarity=0.161  Sum_probs=185.6

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHcCCCccccCC-CCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-----------
Q 010920           15 QSKDELLYQWVIAGDVDAIRALRSQGASLEWMDK-EGKTPLIVACMDSGLINVAKTLIELGANINAYRP-----------   82 (497)
Q Consensus        15 ~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~-~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~-----------   82 (497)
                      .+|.|+||.|++.|++++|++||++|+++|.++. .|+||||+|+.. ++.++|++||++|++++..+.           
T Consensus        23 ~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~-g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~  101 (337)
T 4g8k_A           23 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM-SREDIVELLLRHGADPVLRKKNGATPFILAAI  101 (337)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHc-CCHHHHHHHHHcCCchhhhccCCCchhHHHHh
Confidence            3589999999999999999999999999999876 499999999998 559999999999999887654           


Q ss_pred             -------------------------------ccCCCHHHHHHHHhCCCCCccc----------CCCCCCHHHHHHHcCCH
Q 010920           83 -------------------------------AKRGLEPTVRLLLSCGANALVR----------NDDCHTALGVARIKGHI  121 (497)
Q Consensus        83 -------------------------------~~~g~~~~v~~Ll~~ga~~~~~----------~~~g~T~Lh~A~~~g~~  121 (497)
                                                     +..|+.+++++|+++|++++..          +..|.||||+|+..|+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~  181 (337)
T 4g8k_A          102 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV  181 (337)
T ss_dssp             HTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCH
T ss_pred             cccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCH
Confidence                                           5677888888888888877643          34578888888888888


Q ss_pred             HHHHHHHH-CCCcccccccccCCCCHHHHHhhhcCC----HHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHH
Q 010920          122 NVVRAIES-HICYFCGWLREFYGPSFLEALAPQLMS----RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL  196 (497)
Q Consensus       122 ~~v~~Ll~-~g~~i~~~~~~~~G~T~Lh~~A~~~~~----~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l  196 (497)
                      ++|++|++ .|++++  .+|..|.|+|| .++..+.    ..++++|+++|++.+.++..+.++++.+...+....+..+
T Consensus       182 ~~v~~LL~~~gad~n--~~d~~g~t~l~-~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~L  258 (337)
T 4g8k_A          182 EVLKILLDEMGADVN--ACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL  258 (337)
T ss_dssp             HHHHHHHHHSCCCTT--CCCTTSCCHHH-HHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhccCCCcC--ccCCCCCcHHH-HHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHH
Confidence            88888885 588888  78888888888 4443322    4578888888888888877788888888888777666554


Q ss_pred             ---hhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCCCHHHHHHHHHhhc
Q 010920          197 ---WKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNACR  245 (497)
Q Consensus       197 ---~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~~~~~~~l~~ac~  245 (497)
                         .+.+++..+..|.||||+|+..++.+.+++|.+.+.+....+.|+.|+.
T Consensus       259 l~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~~~L~~A~~  310 (337)
T 4g8k_A          259 LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLVMTARR  310 (337)
T ss_dssp             HTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTCCHHHHHHH
T ss_pred             HHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCHHHHHHH
Confidence               4678888999999999999999999999999988777665556666655

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=6.1e-31  Score=233.98  Aligned_cols=150  Identities=28%  Similarity=0.326  Sum_probs=139.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccCCCHH
Q 010920           19 ELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKRGLEP   89 (497)
Q Consensus        19 T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~g~~~   89 (497)
                      ++|+.||+.|+.++|++||++|+++|.+|..|+||||+|+..+ +.+++++|+++|++++.++.         +..|+.+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~-~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~   84 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENG-HKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE   84 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC-CHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence            3799999999999999999999999999999999999999984 59999999999999998876         8899999


Q ss_pred             HHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCC
Q 010920           90 TVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA  169 (497)
Q Consensus        90 ~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~  169 (497)
                      ++++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|++++  .+|..|.|||| +|+..|+.+++++|+++|++
T Consensus        85 ~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~--~~d~~G~TpL~-~A~~~g~~~iv~~Ll~~GA~  161 (169)
T 4gpm_A           85 VVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN--TSDSDGRTPLD-LAREHGNEEVVKLLEKQGGW  161 (169)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHTC---
T ss_pred             HHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHcCCHHHHHHHHHCCCC
Confidence            9999999999999999999999999999999999999999999999  89999999999 99999999999999999998


Q ss_pred             CCC
Q 010920          170 NPS  172 (497)
Q Consensus       170 ~~~  172 (497)
                      ++.
T Consensus       162 ie~  164 (169)
T 4gpm_A          162 LEH  164 (169)
T ss_dssp             ---
T ss_pred             cCC
Confidence            754

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=2.9e-30  Score=248.45  Aligned_cols=215  Identities=19%  Similarity=0.162  Sum_probs=142.8

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------cc
Q 010920           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AK   84 (497)
Q Consensus        14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~   84 (497)
                      +..|.||||+|++.|+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|+++|++++..+.         +.
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  114 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG-SVKLLKLFLSKGADVNECDFYGFTAFMEAAV  114 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT-CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCCccCcccCCHHHHHHH
Confidence            445667777777777777777777777777767767777777777763 37777777777766665543         55


Q ss_pred             CCCHHHHHHHHhCCCCCccc----------CCCCCCHHHHHHHcCCHHHHHHHHHC-CCcccccccccCCCCHHHHHhhh
Q 010920           85 RGLEPTVRLLLSCGANALVR----------NDDCHTALGVARIKGHINVVRAIESH-ICYFCGWLREFYGPSFLEALAPQ  153 (497)
Q Consensus        85 ~g~~~~v~~Ll~~ga~~~~~----------~~~g~T~Lh~A~~~g~~~~v~~Ll~~-g~~i~~~~~~~~G~T~Lh~~A~~  153 (497)
                      .|+.+++++|+++|++++..          +..|.||||+|+..|+.+++++|++. |++++  ..+..|.|||| .|+.
T Consensus       115 ~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~~g~t~l~-~a~~  191 (285)
T 1wdy_A          115 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN--ACDNMGRNALI-HALL  191 (285)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTT--CCCTTSCCHHH-HHHH
T ss_pred             hCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCC--ccCCCCCCHHH-HHHH
Confidence            66777777777777666655          55666777777777777777777765 66666  56667777777 6666


Q ss_pred             cCC----HHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHH---hhcCCCCCCCCCCChHHHHHHhCChhHHHH
Q 010920          154 LMS----RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL---WKAKIDEPKFHQPDPSLTIYDQATKIRYKF  226 (497)
Q Consensus       154 ~~~----~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l---~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~  226 (497)
                      .++    .+++++|+++|++.+..+..+.++++.+...++...+..+   .+.+++..+..|.|||++|+..+....+++
T Consensus       192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~  271 (285)
T 1wdy_A          192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL  271 (285)
T ss_dssp             CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHH
Confidence            666    6677777777776666665666666666666555444333   455666666777777777777777666666


Q ss_pred             HHhCCC
Q 010920          227 ASANEG  232 (497)
Q Consensus       227 l~~~~~  232 (497)
                      |.+.+.
T Consensus       272 Ll~~Ga  277 (285)
T 1wdy_A          272 LCKRGA  277 (285)
T ss_dssp             HHHHSS
T ss_pred             HHHcCC
Confidence            665443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.97  E-value=3.8e-31  Score=266.15  Aligned_cols=223  Identities=13%  Similarity=0.076  Sum_probs=198.0

Q ss_pred             chhhhc-CCCchHHHHHHHcCCHHHHHHHH--------HcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCC
Q 010920            9 NQHQQR-QSKDELLYQWVIAGDVDAIRALR--------SQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA   79 (497)
Q Consensus         9 ~~~~~~-~~G~T~Lh~Aa~~g~~~~v~~Ll--------~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~   79 (497)
                      +...++ ..|.||||+|+..|+.+++++|+        +.|+++|.+|..|.||||+|+..| +.++|++|+++|++++.
T Consensus       116 ~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g-~~~iv~~Ll~~ga~~~~  194 (373)
T 2fo1_E          116 SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLAR-RRRLVAYLMKAGADPTI  194 (373)
T ss_dssp             TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHT-CHHHHHHHHHTTCCSCC
T ss_pred             cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcC-hHHHHHHHHHCCCCCcc
Confidence            344455 68999999999999998888776        789999999999999999999995 59999999999999998


Q ss_pred             cCc---------ccCCCHHHHHHHHhCC---CCCcccCCCCCCHHHHHHHcC---CHHHHHHHHHCCCcccc------cc
Q 010920           80 YRP---------AKRGLEPTVRLLLSCG---ANALVRNDDCHTALGVARIKG---HINVVRAIESHICYFCG------WL  138 (497)
Q Consensus        80 ~~~---------~~~g~~~~v~~Ll~~g---a~~~~~~~~g~T~Lh~A~~~g---~~~~v~~Ll~~g~~i~~------~~  138 (497)
                      .+.         +..|+.+++++|++++   ++++..|..|.||||+|+..+   +.+++++|+++|++++.      ..
T Consensus       195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~  274 (373)
T 2fo1_E          195 YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDS  274 (373)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSS
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCc
Confidence            765         8899999999999998   899999999999999999998   89999999999999872      12


Q ss_pred             cccCCCCHHHHHhhhcCCHHHHHHhhhCC-CCCCCCCcccccccccCCcCcCHHHHHHH--hhcCCCCCCCCCCChHHHH
Q 010920          139 REFYGPSFLEALAPQLMSRKIWVVVIPCG-TANPSKPLRFELVIYPSLQDVQPRAVIAL--WKAKIDEPKFHQPDPSLTI  215 (497)
Q Consensus       139 ~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~g-a~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~g~~pl~~a  215 (497)
                      .|..|.|||| +|+..|+.+++++|++++ ++.+..+..+.++++.+...++...+..|  .+++++..+..|.|||++|
T Consensus       275 ~d~~g~t~Lh-~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A  353 (373)
T 2fo1_E          275 EKYKGRTALH-YAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLA  353 (373)
T ss_dssp             SSCCCCCTHH-HHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHH
T ss_pred             ccccCCCHHH-HHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHH
Confidence            5779999999 999999999999999876 89888888899999999988877655444  8899999999999999999


Q ss_pred             HHhCChhHHHHHHhCCCC
Q 010920          216 YDQATKIRYKFASANEGD  233 (497)
Q Consensus       216 ~~~~~~~~~~~l~~~~~~  233 (497)
                      +.+++.+.+++|..++.+
T Consensus       354 ~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          354 QANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             HHTTCHHHHHHHHTTC--
T ss_pred             HHcCCHHHHHHHHhcCcc
Confidence            999999999999877654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=2.9e-30  Score=265.07  Aligned_cols=214  Identities=20%  Similarity=0.130  Sum_probs=177.4

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------cc
Q 010920           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AK   84 (497)
Q Consensus        14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~   84 (497)
                      +.+|.||||+|++.|+.++|++|+++|++++.++..|.||||+|+..| +.+++++|+++|++++..+.         +.
T Consensus        11 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   89 (437)
T 1n11_A           11 GESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAG-HTEVAKYLLQNKAKVNAKAKDDQTPLHCAAR   89 (437)
T ss_dssp             ----CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHT-CHHHHHHHHHHTCCSSCCCTTSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Confidence            448999999999999999999999999999999989999999999984 49999999999998887665         77


Q ss_pred             CCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 010920           85 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI  164 (497)
Q Consensus        85 ~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll  164 (497)
                      .|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++++++++  ..+..|.|||| +|+..|+.+++++|+
T Consensus        90 ~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~g~t~L~-~A~~~g~~~~v~~Ll  166 (437)
T 1n11_A           90 IGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA--CMTKKGFTPLH-VAAKYGKVRVAELLL  166 (437)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHTTCHHHHHHHH
T ss_pred             CCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc--CCCCCCCCHHH-HHHHcCCHHHHHHHH
Confidence            889999999999999988888889999999999999999999988888887  77888888888 888888888888888


Q ss_pred             hCCCCCCCCCcccccccccCCcCcCHHHHHHH--hhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCC
Q 010920          165 PCGTANPSKPLRFELVIYPSLQDVQPRAVIAL--WKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANE  231 (497)
Q Consensus       165 ~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~  231 (497)
                      ++|++.+..+..+.++++.+...++...+..+  .+..+...+..|.+||++|+..+..+.+++|...+
T Consensus       167 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  235 (437)
T 1n11_A          167 ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG  235 (437)
T ss_dssp             HTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            88888777776777888888777776555444  56677777788888888888888888888887654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.97  E-value=3.5e-30  Score=240.81  Aligned_cols=213  Identities=15%  Similarity=0.128  Sum_probs=189.8

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------c
Q 010920           14 RQSKDELLYQWVIAGDVDAIRALRSQGA-SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------A   83 (497)
Q Consensus        14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga-~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~   83 (497)
                      +..+.||||.|++.|+.+.++.|++.+. .++.+|..|.||||+|+..| +.+++++|+++|++++..+.         +
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   81 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAG-HTEIVEFLLQLGVPVNDKDDAGWSPLHIAA   81 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHT-CHHHHHHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcC-cHHHHHHHHHhCCCCCCcCCCCCCHHHHHH
Confidence            3468899999999999999999998774 47788999999999999985 49999999999999988765         7


Q ss_pred             cCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHh
Q 010920           84 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV  163 (497)
Q Consensus        84 ~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~L  163 (497)
                      ..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++  ..+..|.|||| +|+..++.+++++|
T Consensus        82 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~L  158 (231)
T 3aji_A           82 SAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--AKDHYDATAMH-RAAAKGNLKMVHIL  158 (231)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHHHH
T ss_pred             HcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCcHHH-HHHHcCCHHHHHHH
Confidence            7899999999999999999999999999999999999999999999999998  88999999999 89999999999999


Q ss_pred             hhCCCCCCCCCcccccccccCCcCcCHHHHHHH--hhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhC
Q 010920          164 IPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL--WKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN  230 (497)
Q Consensus       164 l~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~  230 (497)
                      +++|++.+..+..+.++++.+...++...+..+  .+++++..+..|.||+++|...+.....++|.+.
T Consensus       159 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~  227 (231)
T 3aji_A          159 LFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGE  227 (231)
T ss_dssp             HHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHH
T ss_pred             HhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccc
Confidence            999999888888889999998887776555443  7889999999999999999998888888887654

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=1e-29  Score=244.66  Aligned_cols=226  Identities=18%  Similarity=0.114  Sum_probs=199.0

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccC
Q 010920           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWM-DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKR   85 (497)
Q Consensus        16 ~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~-d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~   85 (497)
                      +|.||||+|++.|+.++|++|++.|++++.. +..|.||||+|+..| +.+++++|+++|++++..+.         +..
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMS-REDIVELLLRHGADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence            6899999999999999999999999999988 788999999999985 59999999999999988765         788


Q ss_pred             CCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCccccccc----------ccCCCCHHHHHhhhcC
Q 010920           86 GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLR----------EFYGPSFLEALAPQLM  155 (497)
Q Consensus        86 g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~----------~~~G~T~Lh~~A~~~~  155 (497)
                      |+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++  ..          +..|.|||| .|+..+
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~~~~~~~~~~~g~t~L~-~A~~~~  159 (285)
T 1wdy_A           83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN--LRRKTKEDQERLRKGGATALM-DAAEKG  159 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT--CCCCCCHHHHHTTCCCCCHHH-HHHHHT
T ss_pred             CCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcc--cccccHHHHHhhccCCCcHHH-HHHHcC
Confidence            99999999999999999999999999999999999999999999999998  55          788999999 999999


Q ss_pred             CHHHHHHhhhC-CCCCCCCCcccccccccCCcCcC------HHHHHHHhhcCCCCCCCCCCChHHHHHHhCChhHHHHHH
Q 010920          156 SRKIWVVVIPC-GTANPSKPLRFELVIYPSLQDVQ------PRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFAS  228 (497)
Q Consensus       156 ~~~iv~~Ll~~-ga~~~~~~~~~~~~l~~~~~~~~------~~~~~~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~  228 (497)
                      +.+++++|+++ |++.+..+..+.++++.+...+.      +..++...+++++..+..|.||||+|+..++...+++|.
T Consensus       160 ~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  239 (285)
T 1wdy_A          160 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL  239 (285)
T ss_dssp             CHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            99999999987 99988888778888888776655      233445588999999999999999999999999999998


Q ss_pred             h-CCC-----CHHHHHHHHHhhc
Q 010920          229 A-NEG-----DKHQLQWLDNACR  245 (497)
Q Consensus       229 ~-~~~-----~~~~~~~l~~ac~  245 (497)
                      . .+.     +....+.++.|+.
T Consensus       240 ~~~g~~~~~~~~~g~t~l~~A~~  262 (285)
T 1wdy_A          240 EQEHIEINDTDSDGKTALLLAVE  262 (285)
T ss_dssp             HSSSCCTTCCCTTSCCHHHHHHH
T ss_pred             hccCCCccccCCCCCcHHHHHHH
Confidence            7 332     2333455555544

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=3.2e-29  Score=232.96  Aligned_cols=184  Identities=16%  Similarity=0.067  Sum_probs=165.4

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCC-CCCCcCc---------c
Q 010920           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRP---------A   83 (497)
Q Consensus        14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga-~~~~~~~---------~   83 (497)
                      +..|.||||+|++.|+.++|++|+++|++++.+|..|.||||+|+..| +.+++++|+++++ +++..+.         +
T Consensus        22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  100 (223)
T 2f8y_A           22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD-AQGVFQILIRNRATDLDARMHDGTTPLILAA  100 (223)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHBTTSCTTCCCTTCCCHHHHHH
T ss_pred             CCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCcccCCCCCCcHHHHHH
Confidence            678999999999999999999999999999999999999999999985 5999999999987 6766544         7


Q ss_pred             cCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHh
Q 010920           84 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV  163 (497)
Q Consensus        84 ~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~L  163 (497)
                      ..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|
T Consensus       101 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~L  177 (223)
T 2f8y_A          101 RLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD--MQNNREETPLF-LAAREGSYETAKVL  177 (223)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHHTCHHHHHHH
T ss_pred             HhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCcCHHH-HHHHcCCHHHHHHH
Confidence            7889999999999999999999999999999999999999999999999998  88999999999 89999999999999


Q ss_pred             hhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCC
Q 010920          164 IPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEG  232 (497)
Q Consensus       164 l~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~  232 (497)
                      +++|++.+                               ..+..|.+|+++|+..+..+.+++|.+.+.
T Consensus       178 l~~ga~~~-------------------------------~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~  215 (223)
T 2f8y_A          178 LDHFANRD-------------------------------ITDHMDRLPRDIAQERMHHDIVRLLDEYNL  215 (223)
T ss_dssp             HHTTCCTT-------------------------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHcCCCCc-------------------------------cccccCCCHHHHHHHhcchHHHHHHHHcCC
Confidence            99886653                               334568899999999999999999987654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.4e-30  Score=249.92  Aligned_cols=185  Identities=17%  Similarity=0.140  Sum_probs=142.8

Q ss_pred             hcCCCchHHHHHHHcCCH-HHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------
Q 010920           13 QRQSKDELLYQWVIAGDV-DAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------   82 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~g~~-~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------   82 (497)
                      .+..|.||||+|+..++. .++++|++.|+++|.+|.+|+||||+|+..|+ .++|++|++.|++++..+.         
T Consensus        48 ~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~-~~~v~~Ll~~~a~~~~~~~~g~t~l~~a  126 (269)
T 4b93_B           48 ADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGR-ADLIPLLLKHGANAGARNADQAVPLHLA  126 (269)
T ss_dssp             ---------------------------CCCCTTCCCTTSCCHHHHHHHTTC-TTHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             cCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc-HHHHHHHHhcCCCcCccCCCCCCccccc
Confidence            466899999999998876 48899999999999999999999999999855 9999999999999988766         


Q ss_pred             ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010920           83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV  162 (497)
Q Consensus        83 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~  162 (497)
                      +..++.+++++|+++|++++.+|..|.||||+|+..|+.++|++|+++|++++  .++..|.|||| +|+..|+.++|++
T Consensus       127 ~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn--~~~~~g~t~Lh-~A~~~g~~~~v~~  203 (269)
T 4b93_B          127 CQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASIN--ASNNKGNTALH-EAVIEKHVFVVEL  203 (269)
T ss_dssp             HHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTT--CBCTTSCBHHH-HHHHTTCHHHHHH
T ss_pred             cccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC--ccccCCCcHHH-HHHHcCCHHHHHH
Confidence            77899999999999999999999999999999999999999999999999999  89999999999 9999999999999


Q ss_pred             hhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCC
Q 010920          163 VIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKI  201 (497)
Q Consensus       163 Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~  201 (497)
                      |+++|++.+..+..+.++++.+.+.+++..++......+
T Consensus       204 Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~  242 (269)
T 4b93_B          204 LLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCV  242 (269)
T ss_dssp             HHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC-----
T ss_pred             HHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhc
Confidence            999999999888888999999887766555543333333

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=2.1e-29  Score=258.61  Aligned_cols=217  Identities=18%  Similarity=0.111  Sum_probs=191.2

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------   82 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------   82 (497)
                      .++..|.||||+|++.|+.++|++|+++|+++|.++..|.||||+|+..| +.+++++|+++|++++..+.         
T Consensus        42 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A  120 (437)
T 1n11_A           42 VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIG-HTNMVKLLLENNANPNLATTAGHTPLHIA  120 (437)
T ss_dssp             CSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHT-CHHHHHHHHHHTCCTTCCCTTCCCHHHHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCC-CHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Confidence            34678999999999999999999999999999999999999999999984 59999999999999988765         


Q ss_pred             ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010920           83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV  162 (497)
Q Consensus        83 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~  162 (497)
                      +..|+.+++++|++++++++..+..|.||||+|+..|+.+++++|+++|++++  ..+..|.|||| +|+..++.+++++
T Consensus       121 ~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~  197 (437)
T 1n11_A          121 AREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN--AAGKNGLTPLH-VAVHHNNLDIVKL  197 (437)
T ss_dssp             HHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCSSCCCHHH-HHHHTTCHHHHHH
T ss_pred             HHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHH
Confidence            77899999999999999988889999999999999999999999999999998  78899999999 8999999999999


Q ss_pred             hhhCCCCCCCCCcccccccccCCcCcCHHHHHHH--hhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCC
Q 010920          163 VIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL--WKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEG  232 (497)
Q Consensus       163 Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~  232 (497)
                      |+++|++....+..+.++++.+...++...+..+  .+.+++..+..|.|||++|+..++.+.+++|.....
T Consensus       198 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~  269 (437)
T 1n11_A          198 LLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQA  269 (437)
T ss_dssp             HGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred             HHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCC
Confidence            9999988877776788888888877776555444  677888888889999999999999999888886543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.97  E-value=1.9e-29  Score=250.36  Aligned_cols=210  Identities=18%  Similarity=0.099  Sum_probs=135.3

Q ss_pred             hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------c
Q 010920           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------A   83 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~   83 (497)
                      ++..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..| +.+++++|+++|++++..+.         +
T Consensus        54 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g-~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~  132 (351)
T 3utm_A           54 SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYG-HYEVTELLLKHGACVNAMDLWQFTPLHEAA  132 (351)
T ss_dssp             SSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCC-CHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            3456777777777777777777777777777777777777777777763 37777777777776666543         5


Q ss_pred             cCCCHHHHHHHHhCCCCCcccC------------------------------------------------------CCCC
Q 010920           84 KRGLEPTVRLLLSCGANALVRN------------------------------------------------------DDCH  109 (497)
Q Consensus        84 ~~g~~~~v~~Ll~~ga~~~~~~------------------------------------------------------~~g~  109 (497)
                      ..|+.+++++|+++|++++..+                                                      ..|.
T Consensus       133 ~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  212 (351)
T 3utm_A          133 SKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHE  212 (351)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCC
T ss_pred             HcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCC
Confidence            6667777777777766655433                                                      3455


Q ss_pred             CHHHHHHHc---CCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCc
Q 010920          110 TALGVARIK---GHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQ  186 (497)
Q Consensus       110 T~Lh~A~~~---g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~  186 (497)
                      ||||+|+..   +..+++++|+++|++++  .++..|.|||| +|+..|+.+++++|+++|++.+..+..+.++++.+..
T Consensus       213 t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~  289 (351)
T 3utm_A          213 TALHCAVASLHPKRKQVAELLLRKGANVN--EKNKDFMTPLH-VAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAAL  289 (351)
T ss_dssp             CHHHHHHHCCSTTHHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CHHHHHHHHhCccHHHHHHHHHHcCCCcC--CcCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            666666666   33566667777776666  56666777777 6666677777777777776666666666666666666


Q ss_pred             CcCHHHHHHH--hhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhC
Q 010920          187 DVQPRAVIAL--WKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN  230 (497)
Q Consensus       187 ~~~~~~~~~l--~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~  230 (497)
                      .++...+..|  .+++++..+..|.||+++|    .....+++.+.
T Consensus       290 ~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a----~~~~~~~l~~~  331 (351)
T 3utm_A          290 AGHLQTCRLLLSYGSDPSIISLQGFTAAQMG----NEAVQQILSES  331 (351)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS----CHHHHHHHHHC
T ss_pred             cCcHHHHHHHHHcCCCCCCcCCCCCChhhhh----hHHHHHHHHhc
Confidence            5555443333  5666666666677766665    33445555443

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=2.8e-29  Score=234.92  Aligned_cols=187  Identities=17%  Similarity=0.127  Sum_probs=162.8

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCC-----CCcCc-------
Q 010920           16 SKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANI-----NAYRP-------   82 (497)
Q Consensus        16 ~G~T~Lh~Aa~~g~~~~v~~Ll~~-ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~-----~~~~~-------   82 (497)
                      .|+||||+|++.|+.++|++|++. |++++.+|..|.||||+|+..| +.+++++|+++|+++     +..+.       
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~   80 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYD-NLEAAMVLMEAAPELVFEPMTSELYEGQTALH   80 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcC-CHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence            589999999999999999999998 9999999999999999999985 599999999999886     32222       


Q ss_pred             --ccCCCHHHHHHHHhCCCCCcccCC-------------CCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHH
Q 010920           83 --AKRGLEPTVRLLLSCGANALVRND-------------DCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFL  147 (497)
Q Consensus        83 --~~~g~~~~v~~Ll~~ga~~~~~~~-------------~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~L  147 (497)
                        +..|+.+++++|+++|++++..+.             .|.||||+|+..|+.+++++|+++|++++  .+|..|.|||
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~t~L  158 (232)
T 2rfa_A           81 IAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR--AQDSLGNTVL  158 (232)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHH
Confidence              778999999999999999888765             79999999999999999999999999998  8899999999


Q ss_pred             HHHhhhcCCHHHH----HHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCCCCCCCCCCChHHHHHHhCChhH
Q 010920          148 EALAPQLMSRKIW----VVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIR  223 (497)
Q Consensus       148 h~~A~~~~~~~iv----~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g~~pl~~a~~~~~~~~  223 (497)
                      | +|+..++.+++    ++|+++|++.....                         ..+..+..|.|||++|+..++.+.
T Consensus       159 ~-~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~-------------------------~~~~~~~~g~tpl~~A~~~g~~~~  212 (232)
T 2rfa_A          159 H-ILILQPNKTFACQMYNLLLSYDGGDHLKS-------------------------LELVPNNQGLTPFKLAGVEGNIVM  212 (232)
T ss_dssp             H-HHHTCSCHHHHHHHHHHHHHTTCSCSSCC-------------------------GGGCCCTTSCCHHHHHHHHTCHHH
T ss_pred             H-HHHHcCChHHHHHHHHHHHhcCCchhhhh-------------------------hhccCCCCCCCHHHHHHHcCCHHH
Confidence            9 89999998887    89999887653221                         124567889999999999999999


Q ss_pred             HHHHHhCC
Q 010920          224 YKFASANE  231 (497)
Q Consensus       224 ~~~l~~~~  231 (497)
                      +++|.+.+
T Consensus       213 v~~Ll~~g  220 (232)
T 2rfa_A          213 FQHLMQKR  220 (232)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhcC
Confidence            99987653

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.97  E-value=7.1e-30  Score=238.13  Aligned_cols=198  Identities=16%  Similarity=0.091  Sum_probs=175.6

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCc---Cc---------c
Q 010920           17 KDELLYQWVIAGDVDAIRALRSQGASLE-WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY---RP---------A   83 (497)
Q Consensus        17 G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n-~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~---~~---------~   83 (497)
                      |.||||+|++.|+.++|++|++.|+++. .+|..|.||||+|+..| +.+++++|+++|++++..   +.         +
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~   80 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQ-AHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   80 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcC-CHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence            7899999999999999999999997754 48999999999999985 599999999999554432   22         7


Q ss_pred             cCCCHHHHHHHHhCC--CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 010920           84 KRGLEPTVRLLLSCG--ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV  161 (497)
Q Consensus        84 ~~g~~~~v~~Ll~~g--a~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~  161 (497)
                      ..|+.+++++|+++|  ++++..+..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.++++
T Consensus        81 ~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~  157 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR--IKDKFNQIPLH-RAASVGSLKLIE  157 (228)
T ss_dssp             HHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHTTCHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHcCCHHHHH
Confidence            889999999999998  8899999999999999999999999999999999999  89999999999 999999999999


Q ss_pred             HhhhCC-CCCCCCCcccccccccCCcCcCHHHHHHH---hhcCCCCCCCCCCChHHHHHHh
Q 010920          162 VVIPCG-TANPSKPLRFELVIYPSLQDVQPRAVIAL---WKAKIDEPKFHQPDPSLTIYDQ  218 (497)
Q Consensus       162 ~Ll~~g-a~~~~~~~~~~~~l~~~~~~~~~~~~~~l---~~~~~~~~~~~g~~pl~~a~~~  218 (497)
                      +|+++| ++.+..+..+.++++.+...++...+..+   .+++++..+..|.||+++|...
T Consensus       158 ~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE  218 (228)
T ss_dssp             HHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST
T ss_pred             HHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH
Confidence            999999 88888888899999999988877655444   5899999999999999998654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.96  E-value=3.1e-29  Score=235.10  Aligned_cols=217  Identities=14%  Similarity=0.067  Sum_probs=194.8

Q ss_pred             hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc----------
Q 010920           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP----------   82 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~----------   82 (497)
                      .|..|.|+||+|++.|+.+++++|++.|++++.++..|.||||+|+..| +.+++++|+++|++++....          
T Consensus         5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A   83 (240)
T 3eu9_A            5 IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINN-RIDLVKYYISKGAIVDQLGGDLNSTPLHWA   83 (240)
T ss_dssp             CSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred             cccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhC-CHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence            3568999999999999999999999999999999999999999999985 59999999999998876542          


Q ss_pred             ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcC-CHHHHH
Q 010920           83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM-SRKIWV  161 (497)
Q Consensus        83 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~-~~~iv~  161 (497)
                      +..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++  ..+..|.|||| +|+..+ ..++++
T Consensus        84 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~--~~~~~g~t~l~-~a~~~~~~~~~~~  160 (240)
T 3eu9_A           84 TRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD--MMDQNGMTPLM-WAAYRTHSVDPTR  160 (240)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHCCSSTTHH
T ss_pred             HHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcc--ccCCCCCcHHH-HHHHhCChHHHHH
Confidence            78899999999999999999999999999999999999999999999999999  89999999999 777555 489999


Q ss_pred             HhhhCCCCCCCCCc-ccccccccCCcCcCHHHHHHH--hhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCCC
Q 010920          162 VVIPCGTANPSKPL-RFELVIYPSLQDVQPRAVIAL--WKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGD  233 (497)
Q Consensus       162 ~Ll~~ga~~~~~~~-~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~  233 (497)
                      +|+..|++.+.... .+.++++.+...+....+..+  .+++++..+..|.||+++|+..+....+++|.+...+
T Consensus       161 ~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~  235 (240)
T 3eu9_A          161 LLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA  235 (240)
T ss_dssp             HHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred             HHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence            99999999887765 688999999887776555444  7899999999999999999999999999999876544

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.96  E-value=3.1e-30  Score=247.39  Aligned_cols=206  Identities=19%  Similarity=0.135  Sum_probs=160.9

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHHcCCC--------ccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGAS--------LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP-   82 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~--------~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~-   82 (497)
                      .+|+.+.++|+.||+.|+.++|++||+.|++        ++..+..|.||||+|+..++...++++|++.|+++|..+. 
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~   85 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD   85 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTT
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC
Confidence            4577889999999999999999999999875        4667888999999999886655789999999999998876 


Q ss_pred             --------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhc
Q 010920           83 --------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL  154 (497)
Q Consensus        83 --------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~  154 (497)
                              +..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++  .+|..|.|||| +|+..
T Consensus        86 G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n--~~d~~g~TpL~-~A~~~  162 (269)
T 4b93_B           86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN--KKDLSGNTPLI-YACSG  162 (269)
T ss_dssp             SCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTCCCHHH-HHHHT
T ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHC
Confidence                    78999999999999999999999999999999999999999999999999999  89999999999 99999


Q ss_pred             CCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHH--hhcCCCCCCCCCCChHHHHHHhCC
Q 010920          155 MSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL--WKAKIDEPKFHQPDPSLTIYDQAT  220 (497)
Q Consensus       155 ~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~g~~pl~~a~~~~~  220 (497)
                      |+.+++++|+++|++.+..+..+.++++.+...++...+..|  .+++++..+..|.|||++|+.++.
T Consensus       163 g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          163 GHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             TCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred             CCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc
Confidence            999999999999999999888899999999988887665444  889999999999999999976553

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.96  E-value=3.1e-29  Score=238.21  Aligned_cols=181  Identities=18%  Similarity=0.060  Sum_probs=169.2

Q ss_pred             hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCC-CCCCcCc---------
Q 010920           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRP---------   82 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga-~~~~~~~---------   82 (497)
                      ++..|.||||+|++.|+.++|++|+++|++++.+|..|.||||+|+..| +.+++++|+++++ +++..+.         
T Consensus        53 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A  131 (253)
T 1yyh_A           53 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD-AQGVFQILIRNRATDLDARMHDGTTPLILA  131 (253)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT-CHHHHHHHHHSTTSCTTCCCTTCCCHHHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCccccCCCCCcHHHHH
Confidence            4679999999999999999999999999999999999999999999995 5999999999987 7777654         


Q ss_pred             ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010920           83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV  162 (497)
Q Consensus        83 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~  162 (497)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++
T Consensus       132 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpL~-~A~~~~~~~~v~~  208 (253)
T 1yyh_A          132 ARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD--MQNNREETPLF-LAAREGSYETAKV  208 (253)
T ss_dssp             HHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHHH
T ss_pred             HHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHCCCHHHHHH
Confidence            77899999999999999999999999999999999999999999999999999  89999999999 9999999999999


Q ss_pred             hhhCCCCCCCCCcccccccccCCcCcCHHHHHHHh
Q 010920          163 VIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW  197 (497)
Q Consensus       163 Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~  197 (497)
                      |+++|++.+..+..+.++++.+.+.++...+..+.
T Consensus       209 Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~  243 (253)
T 1yyh_A          209 LLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD  243 (253)
T ss_dssp             HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999988888999999999888877766553

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.96  E-value=1e-28  Score=238.96  Aligned_cols=185  Identities=16%  Similarity=0.147  Sum_probs=167.1

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc--------c
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP--------A   83 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~--------~   83 (497)
                      .++..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..| +.+++++|+++|++++..+.        +
T Consensus        87 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~  165 (285)
T 3d9h_A           87 IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSG-SWDCVNLLLQHGASVQPESDLASPIHEAA  165 (285)
T ss_dssp             EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHT-CHHHHHHHHHTTCCSSCSCTTSCHHHHHH
T ss_pred             CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC-HHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Confidence            45679999999999999999999999999999999999999999999995 49999999999999886554        7


Q ss_pred             cCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHh
Q 010920           84 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV  163 (497)
Q Consensus        84 ~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~L  163 (497)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++   .+..|.|||| +|+..++.+++++|
T Consensus       166 ~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~---~~~~g~t~L~-~A~~~~~~~~v~~L  241 (285)
T 3d9h_A          166 RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN---QGKGQDSPLH-AVVRTASEELACLL  241 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT---CCBTTBCHHH-HHHHTTCHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC---CCCCCCCHHH-HHHHcCCHHHHHHH
Confidence            8899999999999999999999999999999999999999999999999998   5899999999 99999999999999


Q ss_pred             hhCCCCCCCCCcccccccccCCcCcCHHHHHHHh-hcCC
Q 010920          164 IPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW-KAKI  201 (497)
Q Consensus       164 l~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~-~~~~  201 (497)
                      +++|++.+..+..+.++++.+........++... ++++
T Consensus       242 l~~gad~~~~d~~g~t~l~~A~~~~~~~~~Ll~~~~a~l  280 (285)
T 3d9h_A          242 MDFGADTQAKNAEGKRPVELVPPESPLAQLFLEREGASL  280 (285)
T ss_dssp             HHTTCCTTCCCTTSCCGGGGSCTTSHHHHHHHHHC----
T ss_pred             HHCCCCCCCcCCCCCCHHHHhcCccHHHHHHHHhhccCC
Confidence            9999999999989999999999666555555443 4443

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.96  E-value=1e-28  Score=230.79  Aligned_cols=178  Identities=19%  Similarity=0.149  Sum_probs=165.9

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------   82 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------   82 (497)
                      .++..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..| +.+++++|+++|++++..+.         
T Consensus        35 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  113 (231)
T 3aji_A           35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG-XDEIVKALLVKGAHVNAVNQNGCTPLHYA  113 (231)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT-CHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcC-HHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            35779999999999999999999999999999999999999999999995 59999999999999988765         


Q ss_pred             ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010920           83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV  162 (497)
Q Consensus        83 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~  162 (497)
                      +..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++
T Consensus       114 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~  190 (231)
T 3aji_A          114 ASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN--IQDTEGNTPLH-LACDEERVEEAKF  190 (231)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHTTCHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc--ccCCCCCCHHH-HHHHCCCHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999  89999999999 9999999999999


Q ss_pred             hhhCCCCCCCCCcccccccccCCcCcCHHHH
Q 010920          163 VIPCGTANPSKPLRFELVIYPSLQDVQPRAV  193 (497)
Q Consensus       163 Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~  193 (497)
                      |+++|++.+..+..+.++++.+...++...+
T Consensus       191 Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~  221 (231)
T 3aji_A          191 LVTQGASIYIENKEEKTPLQVAKGGLGLILK  221 (231)
T ss_dssp             HHHTTCCSCCCCTTSCCHHHHSCHHHHHHHH
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHhhHHHHHH
Confidence            9999999988888899999999865554433

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.96  E-value=1.3e-28  Score=244.31  Aligned_cols=217  Identities=17%  Similarity=0.107  Sum_probs=195.2

Q ss_pred             hcCCCchHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------
Q 010920           13 QRQSKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------   82 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~-ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------   82 (497)
                      ++..|.|+||.|++.|+.+.|+.|+.. +.+++.+|..|.||||+|+..| +.+++++|+++|++++..+.         
T Consensus        20 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   98 (351)
T 3utm_A           20 TGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYN-RVRIVQLLLQHGADVHAKDKGGLVPLHNA   98 (351)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             eccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCCccCCCCCcHHHHH
Confidence            456799999999999999999988875 7899999999999999999984 59999999999999998865         


Q ss_pred             ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCccccccc-----------------------
Q 010920           83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLR-----------------------  139 (497)
Q Consensus        83 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~-----------------------  139 (497)
                      +..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++  ..                       
T Consensus        99 ~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~~~l~~a~~~~~~~~~~~~  176 (351)
T 3utm_A           99 CSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT--LVNCHGKSAVDMAPTPELRERLTYE  176 (351)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHCSSHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--cccCCCCcchHHHhhhhhHHHHHhh
Confidence            88999999999999999999999999999999999999999999999999876  33                       


Q ss_pred             -------------------------------ccCCCCHHHHHhhhc---CCHHHHHHhhhCCCCCCCCCcccccccccCC
Q 010920          140 -------------------------------EFYGPSFLEALAPQL---MSRKIWVVVIPCGTANPSKPLRFELVIYPSL  185 (497)
Q Consensus       140 -------------------------------~~~G~T~Lh~~A~~~---~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~  185 (497)
                                                     +..|.|||| +|+..   +..+++++|+++|++.+..+..+.++++.+.
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~-~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~  255 (351)
T 3utm_A          177 FKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALH-CAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAA  255 (351)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHH-HHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             hcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHH-HHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHH
Confidence                                           356779999 88887   5589999999999999988888999999999


Q ss_pred             cCcCHHHHHHH--hhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCCC
Q 010920          186 QDVQPRAVIAL--WKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGD  233 (497)
Q Consensus       186 ~~~~~~~~~~l--~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~  233 (497)
                      ..++...+..|  .+++++..+..|.||||+|+..++.+.+++|...+.+
T Consensus       256 ~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad  305 (351)
T 3utm_A          256 ERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD  305 (351)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            88877665444  7889999999999999999999999999999977654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.96  E-value=1.4e-28  Score=236.81  Aligned_cols=173  Identities=19%  Similarity=0.102  Sum_probs=147.5

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCC---------------
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGAN---------------   76 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~---------------   76 (497)
                      .++..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. ++.+++++|++++++               
T Consensus        40 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  118 (282)
T 1oy3_D           40 LQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRV-RAHTCACVLLQPRPSHPRDASDTYLTQSQD  118 (282)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTT-TCHHHHHHHSSSCCSSCCCC----------
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCcchhHhhhccCCCCchhhHHHHhhcccc
Confidence            4567999999999999999999999999999999999999999999998 459999999998866               


Q ss_pred             --------------------------------CCCcCc---------ccCCCHHHHHHHHhCCCCCcccCCC-CCCHHHH
Q 010920           77 --------------------------------INAYRP---------AKRGLEPTVRLLLSCGANALVRNDD-CHTALGV  114 (497)
Q Consensus        77 --------------------------------~~~~~~---------~~~g~~~~v~~Ll~~ga~~~~~~~~-g~T~Lh~  114 (497)
                                                      ++..+.         +..|+.+++++|+++|++++.++.. |.||||+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~  198 (282)
T 1oy3_D          119 CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHL  198 (282)
T ss_dssp             -------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHH
T ss_pred             cCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHH
Confidence                                            333332         7889999999999999999998854 9999999


Q ss_pred             HHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCc
Q 010920          115 ARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDV  188 (497)
Q Consensus       115 A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~  188 (497)
                      |+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++.+..+..+.+++..+....
T Consensus       199 A~~~~~~~~v~~Ll~~gad~~--~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          199 AVEAQAASVLELLLKAGADPT--ARMYGGRTPLG-SALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHTSSCHHHHHHHHHTTCCCCCCC--------------
T ss_pred             HHHcCCHHHHHHHHHcCCCCc--ccccCCCCHHH-HHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcc
Confidence            999999999999999999999  89999999999 999999999999999999999998888999988877443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.96  E-value=1.1e-27  Score=218.87  Aligned_cols=182  Identities=20%  Similarity=0.191  Sum_probs=156.1

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------c
Q 010920           14 RQSKDELLYQWVIAGDVDAIRALRSQGA-SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------A   83 (497)
Q Consensus        14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga-~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~   83 (497)
                      +..+.||||.|+..|+.+.++.|+..+. +++.+|..|.||||+|+..|+ .+++++|+++|++++..+.         +
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~   80 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNND-IEIAKALIDRGADINLQNSISDSPYLYAG   80 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            3578999999999999999999999886 999999999999999999954 9999999999999887765         7


Q ss_pred             cCCCHHHHHHHH-hCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCC-CcccccccccCCCCHHHHHhhhcCC-----
Q 010920           84 KRGLEPTVRLLL-SCGANALVRNDDCHTALGVARIKGHINVVRAIESHI-CYFCGWLREFYGPSFLEALAPQLMS-----  156 (497)
Q Consensus        84 ~~g~~~~v~~Ll-~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g-~~i~~~~~~~~G~T~Lh~~A~~~~~-----  156 (497)
                      ..|+.+++++|+ ..+++++..+..|.||||+|+..|+.+++++|+++| ++++  .+|..|.|||| +|+..+.     
T Consensus        81 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~~g~t~L~-~A~~~~~~~~~~  157 (201)
T 3hra_A           81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID--FQNDFGYTALI-EAVGLREGNQLY  157 (201)
T ss_dssp             HTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTT--CCCTTSCCHHH-HHHHSSCCSHHH
T ss_pred             HcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC--CCCCCCCCHHH-HHHHhccchhhH
Confidence            788888888888 567788888888888888888888888888888888 7887  78888888888 7877776     


Q ss_pred             HHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhC
Q 010920          157 RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN  230 (497)
Q Consensus       157 ~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~  230 (497)
                      .+++++|+++|++.                               +..+..|.|||++|+..++.+.+++|.+.
T Consensus       158 ~~~v~~Ll~~ga~~-------------------------------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          158 QDIVKLLMENGADQ-------------------------------SIKDNSGRTAMDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             HHHHHHHHHTTCCT-------------------------------TCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred             HHHHHHHHHCCCCC-------------------------------CccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence            88888888887654                               34456789999999999999999988754

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.96  E-value=5.2e-28  Score=226.94  Aligned_cols=181  Identities=19%  Similarity=0.206  Sum_probs=168.4

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcC-CCCCCcCc--------
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELG-ANINAYRP--------   82 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~g-a~~~~~~~--------   82 (497)
                      .++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..| +.+++++|++++ .+++..+.        
T Consensus        39 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~  117 (237)
T 3b7b_A           39 TCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKG-HYEVVQYLLSNGQMDVNCQDDGGWTPMIW  117 (237)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTT-CHHHHHHHHTTTCCCTTCCCTTSCCHHHH
T ss_pred             ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHhCCCCCcccCCCCCCCHHHH
Confidence            34668999999999999999999999999999999999999999999985 599999999998 78877655        


Q ss_pred             -ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 010920           83 -AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV  161 (497)
Q Consensus        83 -~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~  161 (497)
                       +..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++  ..|..|.|||| +|+..++.++++
T Consensus       118 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~  194 (237)
T 3b7b_A          118 ATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH--AVNIHGDSPLH-IAARENRYDCVV  194 (237)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHhCCHhHHH
Confidence             78899999999999999999999999999999999999999999999999999  89999999999 999999999999


Q ss_pred             HhhhCCCCCCCCCcccccccccCCcCcCHHHHHHH
Q 010920          162 VVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL  196 (497)
Q Consensus       162 ~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l  196 (497)
                      +|+++|++.+..+..+.++++.+...++...++.+
T Consensus       195 ~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l  229 (237)
T 3b7b_A          195 LFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQM  229 (237)
T ss_dssp             HHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHH
T ss_pred             HHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999998888899999999988887665543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.96  E-value=9.8e-28  Score=237.65  Aligned_cols=212  Identities=17%  Similarity=0.089  Sum_probs=184.7

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHcCCCc---------------------------------cccCCCCChHHHHHHHhC
Q 010920           15 QSKDELLYQWVIAGDVDAIRALRSQGASL---------------------------------EWMDKEGKTPLIVACMDS   61 (497)
Q Consensus        15 ~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~---------------------------------n~~d~~G~TpLh~Aa~~g   61 (497)
                      ..|.||||+|++.|+.++|++||++|+++                                 +.+|..|.||||+|+..|
T Consensus        57 ~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~  136 (337)
T 4g8k_A           57 EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG  136 (337)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTT
T ss_pred             CCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcC
Confidence            45999999999999999999999998765                                 456778999999999984


Q ss_pred             CcHHHHHHHHHcCCCCCCcCc-------------------ccCCCHHHHHHHHh-CCCCCcccCCCCCCHHHHHHHcCC-
Q 010920           62 GLINVAKTLIELGANINAYRP-------------------AKRGLEPTVRLLLS-CGANALVRNDDCHTALGVARIKGH-  120 (497)
Q Consensus        62 ~~~~~v~~Ll~~ga~~~~~~~-------------------~~~g~~~~v~~Ll~-~ga~~~~~~~~g~T~Lh~A~~~g~-  120 (497)
                       +.+++++|+++|++++....                   +..|+.++|++||+ .|++++.+|..|.|+||.++..++ 
T Consensus       137 -~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~  215 (337)
T 4g8k_A          137 -KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD  215 (337)
T ss_dssp             -CHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCT
T ss_pred             -cHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCc
Confidence             59999999999999887532                   67899999999995 699999999999999999886654 


Q ss_pred             ---HHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhC-CCCCCCCCcccccccccCCcCcCHHHHHHH
Q 010920          121 ---INVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC-GTANPSKPLRFELVIYPSLQDVQPRAVIAL  196 (497)
Q Consensus       121 ---~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l  196 (497)
                         ..++++|+++|++++  .+|..|.|||| +|+..++.+++++|+.. |++.+.++..+.++++.+...++...+..|
T Consensus       216 ~~~~~i~~lLl~~gad~n--~~d~~g~t~L~-~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~L  292 (337)
T 4g8k_A          216 SDVEAITHLLLDHGADVN--VRGERGKTPLI-LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL  292 (337)
T ss_dssp             TTHHHHHHHHHHTTCCTT--CCCGGGCCHHH-HHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence               468899999999999  89999999999 99999999999999975 889988888899999999988887666555


Q ss_pred             --hhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCCCHH
Q 010920          197 --WKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKH  235 (497)
Q Consensus       197 --~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~~~  235 (497)
                        .|+++     +..+||++|+.+++.+.+++|.+++.+.+
T Consensus       293 l~~GAd~-----n~~~~L~~A~~~~~~~iv~~Ll~~GA~~d  328 (337)
T 4g8k_A          293 CKRGAST-----DCGDLVMTARRNYDHSLVKVLLSHGAKED  328 (337)
T ss_dssp             HTTSCSS-----TTCCHHHHHHHTTCHHHHHHHHHTTCCC-
T ss_pred             HHCCCCC-----CCCCHHHHHHHcCCHHHHHHHHHCcCCCC
Confidence              55555     35679999999999999999998876654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.96  E-value=3.8e-29  Score=234.84  Aligned_cols=197  Identities=18%  Similarity=0.169  Sum_probs=157.4

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHHcCC----CccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-----
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGA----SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP-----   82 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga----~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~-----   82 (497)
                      ++|.+|.||||+|+..|+.+++++|++.+.    ++|.+|..|.||||+|+..| +.+++++|+++|++++..+.     
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~   81 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITN-QPEIAEALLGAGCDPELRDFRGNTP   81 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTT-CHHHHHCCCSCCCCSCCCCTTCCCH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            457799999999999999999999988764    78999999999999999985 49999999999999988765     


Q ss_pred             ----ccCCCHHHHHHHHhCCCC------CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCccccccccc-CCCCHHHHHh
Q 010920           83 ----AKRGLEPTVRLLLSCGAN------ALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREF-YGPSFLEALA  151 (497)
Q Consensus        83 ----~~~g~~~~v~~Ll~~ga~------~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~-~G~T~Lh~~A  151 (497)
                          +..|+.+++++|++++++      ++..+..|.||||+|+..|+.+++++|+++|++++  .++. .|.|||| +|
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~~g~tpL~-~A  158 (236)
T 1ikn_D           82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN--AQEPCNGRTALH-LA  158 (236)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT--CCCTTTCCCHHH-HH
T ss_pred             HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCCHHH-HH
Confidence                778999999999998875      46678889999999999999999999999999998  7776 8999999 89


Q ss_pred             hhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHH--hhcCCC--CCCCCCCChH
Q 010920          152 PQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL--WKAKID--EPKFHQPDPS  212 (497)
Q Consensus       152 ~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~--~~~~~g~~pl  212 (497)
                      +..++.+++++|+++|++.+..+..+.++++.+...++...+..|  .+++..  .++..+.++.
T Consensus       159 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~  223 (236)
T 1ikn_D          159 VDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESY  223 (236)
T ss_dssp             HHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCC
T ss_pred             HHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHH
Confidence            999999999999999988877776677777777766665544443  344332  4555555543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.96  E-value=4.9e-28  Score=227.47  Aligned_cols=179  Identities=18%  Similarity=0.159  Sum_probs=164.8

Q ss_pred             hhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCC----CCCCcCc----
Q 010920           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA----NINAYRP----   82 (497)
Q Consensus        11 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga----~~~~~~~----   82 (497)
                      ..++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|+++++    +++..+.    
T Consensus        40 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~~~~~~~Ll~~~~~~~~~~~~~~~~g~t  118 (241)
T 1k1a_A           40 DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHR-SPTCLRALLDSAAPGTLDLEARNYDGLT  118 (241)
T ss_dssp             CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHHSCTTSCCTTCCCTTSCC
T ss_pred             CcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCccccccccCcCCCc
Confidence            345678999999999999999999999999999999999999999999985 5999999999987    6666554    


Q ss_pred             -----ccCCCHHHHHHHHhCCCCCcccC-CCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCC
Q 010920           83 -----AKRGLEPTVRLLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS  156 (497)
Q Consensus        83 -----~~~g~~~~v~~Ll~~ga~~~~~~-~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~  156 (497)
                           +..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++
T Consensus       119 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~  195 (241)
T 1k1a_A          119 ALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN--AQMYSGSSALH-SASGRGL  195 (241)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CBCTTSCBHHH-HHHHHTC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHcCC
Confidence                 78899999999999999999998 889999999999999999999999999999  89999999999 9999999


Q ss_pred             HHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHH
Q 010920          157 RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAV  193 (497)
Q Consensus       157 ~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~  193 (497)
                      .+++++|+++|++.+..+..+.++++.+...+....+
T Consensus       196 ~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~  232 (241)
T 1k1a_A          196 LPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL  232 (241)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHH
Confidence            9999999999999998888899999999976655444

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.96  E-value=1e-27  Score=223.50  Aligned_cols=172  Identities=16%  Similarity=0.093  Sum_probs=159.9

Q ss_pred             hcCCCchHHHHHHHcCCHHHHHHHHHcC--CCccc-cCCCCChHHHHHHHhCCcHHHHHHHHHcC--CCCCCcCc-----
Q 010920           13 QRQSKDELLYQWVIAGDVDAIRALRSQG--ASLEW-MDKEGKTPLIVACMDSGLINVAKTLIELG--ANINAYRP-----   82 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~g--a~~n~-~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~g--a~~~~~~~-----   82 (497)
                      ++..|.||||+|+..|+.+++++|+++|  .+++. .+..|.||||+|+..|+ .+++++|+++|  ++++..+.     
T Consensus        32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~~~~Ll~~g~~~~~~~~~~~g~t~  110 (228)
T 2dzn_A           32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGN-LEVVKSLYDRPLKPDLNKITNQGVTC  110 (228)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCC-HHHHHHHHSSSSCCCTTCCCTTCCCH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCC-HHHHHHHHhCCCCcccccCCcCCCCH
Confidence            5789999999999999999999999999  66666 78899999999999955 99999999998  77777654     


Q ss_pred             ----ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCC-CcccccccccCCCCHHHHHhhhcCCH
Q 010920           83 ----AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI-CYFCGWLREFYGPSFLEALAPQLMSR  157 (497)
Q Consensus        83 ----~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g-~~i~~~~~~~~G~T~Lh~~A~~~~~~  157 (497)
                          +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++| ++++  .+|..|.|||| +|+..++.
T Consensus       111 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~d~~g~t~L~-~A~~~~~~  187 (228)
T 2dzn_A          111 LHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN--WQDKQGWTPLF-HALAEGHG  187 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSC--CCCTTSCCHHH-HHHHTTCH
T ss_pred             HHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCccccc--CcCCCCCCHHH-HHHHcCCH
Confidence                7889999999999999999999999999999999999999999999999 9998  89999999999 99999999


Q ss_pred             HHHHHhh-hCCCCCCCCCcccccccccCCcCc
Q 010920          158 KIWVVVI-PCGTANPSKPLRFELVIYPSLQDV  188 (497)
Q Consensus       158 ~iv~~Ll-~~ga~~~~~~~~~~~~l~~~~~~~  188 (497)
                      +++++|+ ++|++.+..+..+.++++.+.+..
T Consensus       188 ~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~~  219 (228)
T 2dzn_A          188 DAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ  219 (228)
T ss_dssp             HHHHHHHHHHCCCSCCBCTTSCBGGGGCSSTT
T ss_pred             HHHHHHHHhcCCCCCccCCCCCcHHHHHHHHH
Confidence            9999999 999999998888999999998553

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.96  E-value=1.5e-28  Score=237.86  Aligned_cols=198  Identities=15%  Similarity=0.064  Sum_probs=121.2

Q ss_pred             hhhhchhhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCccc
Q 010920            5 LNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAK   84 (497)
Q Consensus         5 l~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~   84 (497)
                      |.+.+...+|..|.||||+|+..|+.++|++|+++|++++.+|  |.||||+|+..|+ .+++++|+++|++++.     
T Consensus        19 L~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~-~~~v~~Ll~~ga~~~~-----   90 (285)
T 3kea_A           19 LSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLED-TKIVKILLFSGLDDSQ-----   90 (285)
T ss_dssp             HHSTTTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSS-CHHHHHHHHTTCCTTC-----
T ss_pred             HHhCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCC-HHHHHHHHHCCCCCCC-----
Confidence            4444556678899999999999999999999999999998884  8999999999844 7777777766666654     


Q ss_pred             CCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCC-CCHHHHHhhhcCCHHHHHHh
Q 010920           85 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYG-PSFLEALAPQLMSRKIWVVV  163 (497)
Q Consensus        85 ~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G-~T~Lh~~A~~~~~~~iv~~L  163 (497)
                                         +|..|.||||+|+..|+.+++++|+++|++++  ..+..| .|||| +|+..++.+++++|
T Consensus        91 -------------------~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--~~~~~g~~t~L~-~A~~~~~~~~v~~L  148 (285)
T 3kea_A           91 -------------------FDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM--FYGKTGWKTSFY-HAVMLNDVSIVSYF  148 (285)
T ss_dssp             -------------------CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGG--GCSSSGGGSHHH-HHHHTTCHHHHHHH
T ss_pred             -------------------cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC--ccCCCCCCCHHH-HHHHcCCHHHHHHH
Confidence                               44444555555555555555555555555444  444444 45555 44444555555555


Q ss_pred             hhCCCCCCCCCcccccccccCCcCcCHHHHHHH--hhcCCCCCCCCCCCh-HHHHHHhCChhHHHHHHhCCCC
Q 010920          164 IPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL--WKAKIDEPKFHQPDP-SLTIYDQATKIRYKFASANEGD  233 (497)
Q Consensus       164 l~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~g~~p-l~~a~~~~~~~~~~~l~~~~~~  233 (497)
                      +++|++..... .+.++++.+...++...+..|  .+++++..+..|.|| ||+|+..+..+.+++|...+.+
T Consensus       149 l~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad  220 (285)
T 3kea_A          149 LSEIPSTFDLA-ILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN  220 (285)
T ss_dssp             HTTSCTTCCCS-THHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBC
T ss_pred             HhCCCcccccc-CCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC
Confidence            54444432221 244444444444433332222  444555555666665 6666666666666666655433

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.96  E-value=7.2e-29  Score=241.23  Aligned_cols=204  Identities=18%  Similarity=0.147  Sum_probs=180.0

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------cc
Q 010920           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AK   84 (497)
Q Consensus        14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~   84 (497)
                      +.+|.||||.|+..|+.++|++|+++|+++|.+|..|.||||+|+..| +.+++++|+++|++++..+.         +.
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~  115 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDD-NVDMVKFLVENGANINQPDNEGWIPLHAAAS  115 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTT-CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC-CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            557899999999999999999999999999999999999999999985 59999999999999998765         88


Q ss_pred             CCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCcccc------------------------ccc
Q 010920           85 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES-HICYFCG------------------------WLR  139 (497)
Q Consensus        85 ~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~-~g~~i~~------------------------~~~  139 (497)
                      .|+.+++++|+++|++++..+..|.||||+|+..++.++++.|+. .+.+++.                        ...
T Consensus       116 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  195 (299)
T 1s70_B          116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH  195 (299)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred             cCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhh
Confidence            899999999999999999999999999999999999999987764 3333320                        135


Q ss_pred             ccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHH--hhcCCCCCCCCCCChHHHHHH
Q 010920          140 EFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL--WKAKIDEPKFHQPDPSLTIYD  217 (497)
Q Consensus       140 ~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~g~~pl~~a~~  217 (497)
                      +..|.|||| +|+..|+.+++++|+++|++.+..+..+.++++.+...++...+..|  .+++++..+..|.||+++|..
T Consensus       196 ~~~g~t~L~-~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          196 AKSGGTALH-VAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (299)
T ss_dssp             TTTCCCHHH-HHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             cCCCCCHHH-HHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            678999999 99999999999999999999998888899999999988877665444  888999999999999999865


Q ss_pred             hC
Q 010920          218 QA  219 (497)
Q Consensus       218 ~~  219 (497)
                      ..
T Consensus       275 ~~  276 (299)
T 1s70_B          275 DI  276 (299)
T ss_dssp             GG
T ss_pred             HH
Confidence            43

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.95  E-value=3.3e-28  Score=231.35  Aligned_cols=188  Identities=15%  Similarity=0.112  Sum_probs=140.1

Q ss_pred             CchHHHHHHHcCCHH----HHHHHHHcCCCccc----cCCCCChHHHHHHHh---CCcHHHHHHHHHcCCCCCCcC----
Q 010920           17 KDELLYQWVIAGDVD----AIRALRSQGASLEW----MDKEGKTPLIVACMD---SGLINVAKTLIELGANINAYR----   81 (497)
Q Consensus        17 G~T~Lh~Aa~~g~~~----~v~~Ll~~ga~~n~----~d~~G~TpLh~Aa~~---g~~~~~v~~Ll~~ga~~~~~~----   81 (497)
                      |+||||+|++.|+.+    ++++|++.|++++.    +|..|.||||+|+..   |+ .+++++|+++|++++..+    
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~-~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGV-NACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTB-CTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccch-HHHHHHHHhcCCcccchhhhcc
Confidence            889999999999997    66777889999998    899999999999997   65 999999999988776322    


Q ss_pred             ---------c-------ccCCCHHHHHHHHhCCCCCcccCCC-------------CCCHHHHHHHcCCHHHHHHHHH---
Q 010920           82 ---------P-------AKRGLEPTVRLLLSCGANALVRNDD-------------CHTALGVARIKGHINVVRAIES---  129 (497)
Q Consensus        82 ---------~-------~~~g~~~~v~~Ll~~ga~~~~~~~~-------------g~T~Lh~A~~~g~~~~v~~Ll~---  129 (497)
                               +       +..|+.+++++|+++|++++.++..             |.||||+|+..|+.+++++|++   
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~  160 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH  160 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence                     1       5566666666666666666666654             6666666666666666666666   


Q ss_pred             CCCcccccccccCCCCHHHHHhhh--cCCHH-------HHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcC
Q 010920          130 HICYFCGWLREFYGPSFLEALAPQ--LMSRK-------IWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAK  200 (497)
Q Consensus       130 ~g~~i~~~~~~~~G~T~Lh~~A~~--~~~~~-------iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~  200 (497)
                      +|++++  .+|..|.|||| +|+.  .++.+       ++++|+++|++.....                        ..
T Consensus       161 ~ga~~n--~~d~~g~TpLh-~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~------------------------~~  213 (256)
T 2etb_A          161 QPASLE--ATDSLGNTVLH-ALVMIADNSPENSALVIHMYDGLLQMGARLCPTV------------------------QL  213 (256)
T ss_dssp             CCCCTT--CCCTTSCCHHH-HHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTC------------------------CG
T ss_pred             cCCCcC--ccCCCCCCHHH-HHHHcccCCchhhHHHHHHHHHHHHcCCCccccc------------------------cc
Confidence            666666  66666666666 5655  55555       6666666665432110                        01


Q ss_pred             CCCCCCCCCChHHHHHHhCChhHHHHHHhCCC
Q 010920          201 IDEPKFHQPDPSLTIYDQATKIRYKFASANEG  232 (497)
Q Consensus       201 ~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~  232 (497)
                      .+..+..|.|||++|+..++.+.+++|.+++.
T Consensus       214 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~  245 (256)
T 2etb_A          214 EEISNHQGLTPLKLAAKEGKIEIFRHILQREF  245 (256)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence            26778899999999999999999999986543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=4.8e-28  Score=219.93  Aligned_cols=152  Identities=24%  Similarity=0.201  Sum_probs=143.4

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------   82 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------   82 (497)
                      .++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|+++|++++..+.         
T Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  108 (192)
T 2rfm_A           30 YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNN-RLGIAEKLLSKGSNVNTKDFSGKTPLMWS  108 (192)
T ss_dssp             CCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcC-CHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            46789999999999999999999999999999999999999999999985 59999999999999988765         


Q ss_pred             ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010920           83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV  162 (497)
Q Consensus        83 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~  162 (497)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++
T Consensus       109 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~~v~~  185 (192)
T 2rfm_A          109 IIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADIS--ARDLTGLTAEA-SARIFGRQEVIKI  185 (192)
T ss_dssp             HHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CBCTTSCBHHH-HHHHTTCHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHhCcHHHHHH
Confidence            77899999999999999999999999999999999999999999999999999  89999999999 9999999999999


Q ss_pred             hhhCC
Q 010920          163 VIPCG  167 (497)
Q Consensus       163 Ll~~g  167 (497)
                      |+++|
T Consensus       186 Ll~~~  190 (192)
T 2rfm_A          186 FTEVR  190 (192)
T ss_dssp             HHHHH
T ss_pred             HHhcc
Confidence            99765

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=2.2e-27  Score=211.02  Aligned_cols=150  Identities=23%  Similarity=0.317  Sum_probs=140.5

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------cc
Q 010920           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AK   84 (497)
Q Consensus        14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~   84 (497)
                      ...+.|+||+|++.|+.++|++|+++|++++.+|..|.||||+|+..| +.+++++|+++|++++..+.         +.
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   89 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNG-HLEIVEVLLKNGADVNAVDHAGMTPLRLAAL   89 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            557889999999999999999999999999999999999999999985 59999999999999988765         88


Q ss_pred             CCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 010920           85 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI  164 (497)
Q Consensus        85 ~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll  164 (497)
                      .|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+
T Consensus        90 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~L~  166 (169)
T 2y1l_E           90 FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN--AQDKFGKTAFD-ISIDNGNEDLAEILQ  166 (169)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHhCCHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999998  89999999999 999999999999999


Q ss_pred             hCC
Q 010920          165 PCG  167 (497)
Q Consensus       165 ~~g  167 (497)
                      +.|
T Consensus       167 ~~G  169 (169)
T 2y1l_E          167 KLN  169 (169)
T ss_dssp             TC-
T ss_pred             HcC
Confidence            876

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=1e-27  Score=211.27  Aligned_cols=149  Identities=21%  Similarity=0.273  Sum_probs=139.7

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccCC
Q 010920           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKRG   86 (497)
Q Consensus        16 ~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~g   86 (497)
                      ...||||+|++.|+.+++++|+++|++++.+|..|.||||+|+. |+ .+++++|+++|++++..+.         +..|
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~-~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GN-PEIARRLLLRGANPDLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-Cc-HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            67899999999999999999999999999999999999999998 55 9999999999999998765         7889


Q ss_pred             CHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCc-ccccccccCCCCHHHHHhhhcCCHHHHHHhhh
Q 010920           87 LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY-FCGWLREFYGPSFLEALAPQLMSRKIWVVVIP  165 (497)
Q Consensus        87 ~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~-i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~  165 (497)
                      +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++ ++  ..+..|.|||| +|+..++.+++++|++
T Consensus        82 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~Ll~  158 (162)
T 1ihb_A           82 FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG--HRNHKGDTACD-LARLYGRNEVVSLMQA  158 (162)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCC--CcCCCCCcHHH-HHHHcCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998 57  79999999999 9999999999999999


Q ss_pred             CCCC
Q 010920          166 CGTA  169 (497)
Q Consensus       166 ~ga~  169 (497)
                      +|++
T Consensus       159 ~GAd  162 (162)
T 1ihb_A          159 NGAG  162 (162)
T ss_dssp             TC--
T ss_pred             hCCC
Confidence            9985

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.95  E-value=2.4e-28  Score=244.75  Aligned_cols=212  Identities=15%  Similarity=0.054  Sum_probs=181.4

Q ss_pred             hhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHc----CCCCCC-------
Q 010920           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL----GANINA-------   79 (497)
Q Consensus        11 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~----ga~~~~-------   79 (497)
                      ..++..|.||||+|+..|+.++|++|+++|++++.  ..|.||||+|+.. ++.+++++|+++    |++++.       
T Consensus        47 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  123 (364)
T 3ljn_A           47 TIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVMA-NKTDLVVALVEGAKERGQMPESLLNECDE  123 (364)
T ss_dssp             TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHHT-TCHHHHHHHHHHHHHHTCCHHHHHTCCCC
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHHc-CCHHHHHHHHHhccccCCCHHHHHhhcch
Confidence            34567999999999999999999999999997643  4799999999998 559999999999    777765       


Q ss_pred             ----------cCc---------ccCC--CHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCc-----
Q 010920           80 ----------YRP---------AKRG--LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY-----  133 (497)
Q Consensus        80 ----------~~~---------~~~g--~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~-----  133 (497)
                                .+.         +..|  +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++     
T Consensus       124 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~  203 (364)
T 3ljn_A          124 REVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLR  203 (364)
T ss_dssp             CCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCC
T ss_pred             HhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccccc
Confidence                      222         7788  99999999999999999999999999999999999999999999998     


Q ss_pred             ccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHH--hhcC-----------
Q 010920          134 FCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL--WKAK-----------  200 (497)
Q Consensus       134 i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~-----------  200 (497)
                      ++  ..|..|.|||| +|+..|+.+++++|+++|++.+..+..+.++++.+...++...+..|  .++.           
T Consensus       204 ~~--~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  280 (364)
T 3ljn_A          204 LD--YANKQGNSHLH-WAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNG  280 (364)
T ss_dssp             TT--CCCTTCCCTTH-HHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSS
T ss_pred             cc--ccCCCCCcHHH-HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCc
Confidence            88  89999999999 99999999999999999999999988899999999988887666555  3222           


Q ss_pred             -CCCCCCCCCChHHHHHHhCChhHHHHHH
Q 010920          201 -IDEPKFHQPDPSLTIYDQATKIRYKFAS  228 (497)
Q Consensus       201 -~~~~~~~g~~pl~~a~~~~~~~~~~~l~  228 (497)
                       ....+..+.+|++.|+..++...+..+.
T Consensus       281 ~~~~~~~~~~~~l~~aa~~~~~~~v~~ll  309 (364)
T 3ljn_A          281 TTVLPDRVVWLDFVPAAADPSKQEVLQLL  309 (364)
T ss_dssp             SSBCGGGCCCCTTSCSSCCHHHHHHHHHH
T ss_pred             ccccccccccccchhhhhccCHHHHHHHH
Confidence             2235667788888777776655554443

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=1.4e-27  Score=211.61  Aligned_cols=151  Identities=21%  Similarity=0.208  Sum_probs=142.3

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccCC
Q 010920           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKRG   86 (497)
Q Consensus        16 ~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~g   86 (497)
                      .|.||||+|++.|+.+++++|++.|++++.+|..|.||||+|+..| +.+++++|+++|++++..+.         +..|
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   80 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHG-QIAVVEFLLQNGADPQLLGKGRESALSLACSKG   80 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCC-CHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence            5899999999999999999999999999999999999999999985 59999999999999988765         7889


Q ss_pred             CHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhC
Q 010920           87 LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC  166 (497)
Q Consensus        87 ~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~  166 (497)
                      +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++
T Consensus        81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~L~~~  157 (167)
T 3v31_A           81 YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT--IETDSGYNSMD-LAVALGYRSVQQVIESH  157 (167)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHcCcHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998  89999999999 99999999999999988


Q ss_pred             CCCC
Q 010920          167 GTAN  170 (497)
Q Consensus       167 ga~~  170 (497)
                      +.+.
T Consensus       158 ~~~~  161 (167)
T 3v31_A          158 LLKL  161 (167)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7553

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.95  E-value=7.7e-28  Score=231.14  Aligned_cols=194  Identities=13%  Similarity=0.134  Sum_probs=127.8

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHH----cCCCcc----ccCCCCChHHHHHHHh--CCcHHHHHHHHHcCCCCCC--
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRS----QGASLE----WMDKEGKTPLIVACMD--SGLINVAKTLIELGANINA--   79 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~----~ga~~n----~~d~~G~TpLh~Aa~~--g~~~~~v~~Ll~~ga~~~~--   79 (497)
                      ..+..|.||||+|++.|+.++|+.|++    .+++++    ..|..|.||||+|+..  .++.+++++|+++|++++.  
T Consensus         8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~   87 (273)
T 2pnn_A            8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK   87 (273)
T ss_dssp             ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHH
T ss_pred             CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchh
Confidence            457799999999999999999998887    566665    4588999999999985  2459999999999876432  


Q ss_pred             ---------cC--c-------ccCCCHHHHHHHHhCCCCCcccCC--------------CCCCHHHHHHHcCCHHHHHHH
Q 010920           80 ---------YR--P-------AKRGLEPTVRLLLSCGANALVRND--------------DCHTALGVARIKGHINVVRAI  127 (497)
Q Consensus        80 ---------~~--~-------~~~g~~~~v~~Ll~~ga~~~~~~~--------------~g~T~Lh~A~~~g~~~~v~~L  127 (497)
                               .+  .       +..|+.+++++|+++|++++.++.              .|.||||+|+..|+.+++++|
T Consensus        88 ~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  167 (273)
T 2pnn_A           88 QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL  167 (273)
T ss_dssp             HHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHH
T ss_pred             HHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence                     10  0       445555555555555555555544              455555555555555555555


Q ss_pred             HH---CCCcccccccccCCCCHHHHHhhhcCC---------HHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHH
Q 010920          128 ES---HICYFCGWLREFYGPSFLEALAPQLMS---------RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIA  195 (497)
Q Consensus       128 l~---~g~~i~~~~~~~~G~T~Lh~~A~~~~~---------~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~  195 (497)
                      ++   +|++++  .+|..|.|||| +|+..++         .+++++|+++|++.+...                     
T Consensus       168 l~~~~~gad~~--~~d~~g~tpLh-~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~---------------------  223 (273)
T 2pnn_A          168 LQNSWQPADIS--ARDSVGNTVLH-ALVEVADNTVDNTKFVTSMYNEILILGAKLHPTL---------------------  223 (273)
T ss_dssp             HHCSSCCCCTT--CCCTTSCCHHH-HHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTC---------------------
T ss_pred             HhcccCCCCce--eeCCCCCcHHH-HHHHccCcchhHHHHHHHHHHHHHHhhhhccccc---------------------
Confidence            55   555555  45555555555 4554444         455555555544432111                     


Q ss_pred             HhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCC
Q 010920          196 LWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEG  232 (497)
Q Consensus       196 l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~  232 (497)
                         ..++..+..|.|||++|+..++.+.+++|...+.
T Consensus       224 ---~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  257 (273)
T 2pnn_A          224 ---KLEEITNRKGLTPLALAASSGKIGVLAYILQREI  257 (273)
T ss_dssp             ---CGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             ---ccccccCCCCCCHHHHHHHhChHHHHHHHHHCCC
Confidence               0023578899999999999999999999987665

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=2.1e-27  Score=211.56  Aligned_cols=155  Identities=23%  Similarity=0.193  Sum_probs=142.2

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccCC
Q 010920           17 KDELLYQWVIAGDVDAIRALRSQGAS-LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKRG   86 (497)
Q Consensus        17 G~T~Lh~Aa~~g~~~~v~~Ll~~ga~-~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~g   86 (497)
                      +.||||+|+..|+.++++.|++.|.+ ++.+|..|.||||+|+..| +.+++++|+++|++++..+.         +..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFG-EIETVRFLLEWGADPHILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTT-CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCchhhcccCCCHHHHHHHCC
Confidence            57899999999999999999999976 8999999999999999985 59999999999999998765         8889


Q ss_pred             CHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhC
Q 010920           87 LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC  166 (497)
Q Consensus        87 ~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~  166 (497)
                      +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++
T Consensus        81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~~~~~L~~~  157 (172)
T 3v30_A           81 YTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT--TEADSGYTPMD-LAVALGYRKVQQVIENH  157 (172)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHhCcHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999  89999999999 99999999999999999


Q ss_pred             CCCCCCCCc
Q 010920          167 GTANPSKPL  175 (497)
Q Consensus       167 ga~~~~~~~  175 (497)
                      |++....+.
T Consensus       158 ~~~~~~~~~  166 (172)
T 3v30_A          158 ILKLFQSNL  166 (172)
T ss_dssp             HHHHSCC--
T ss_pred             HHHHhcccC
Confidence            987654443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.95  E-value=2.1e-27  Score=238.81  Aligned_cols=183  Identities=15%  Similarity=0.072  Sum_probs=166.2

Q ss_pred             hhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcC---CCCCCcCc-----
Q 010920           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELG---ANINAYRP-----   82 (497)
Q Consensus        11 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~g---a~~~~~~~-----   82 (497)
                      +.++..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..| +.+++++|++++   ++++..+.     
T Consensus       160 n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~d~~g~t~  238 (373)
T 2fo1_E          160 NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANR-DFGMMVYMLNSTKLKGDIEELDRNGMTA  238 (373)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTT-CHHHHHHHTTSHHHHHTTSCCCTTSCCH
T ss_pred             cCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCC-CHHHHHHHHhcCccccChhhcCCCCCCH
Confidence            345679999999999999999999999999999999999999999999985 599999999987   78877665     


Q ss_pred             ----ccCC---CHHHHHHHHhCCCCCcc--------cCCCCCCHHHHHHHcCCHHHHHHHHHCC-CcccccccccCCCCH
Q 010920           83 ----AKRG---LEPTVRLLLSCGANALV--------RNDDCHTALGVARIKGHINVVRAIESHI-CYFCGWLREFYGPSF  146 (497)
Q Consensus        83 ----~~~g---~~~~v~~Ll~~ga~~~~--------~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g-~~i~~~~~~~~G~T~  146 (497)
                          +..+   +.+++++|+++|++++.        .|..|.||||+|+..|+.++|++|++++ ++++  .+|..|.||
T Consensus       239 L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n--~~d~~g~Tp  316 (373)
T 2fo1_E          239 LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD--KQDEDGKTP  316 (373)
T ss_dssp             HHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT--CCCTTCCCH
T ss_pred             HHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCcc--CcCCCCCCH
Confidence                5555   89999999999999886        5779999999999999999999999876 9999  899999999


Q ss_pred             HHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHh
Q 010920          147 LEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW  197 (497)
Q Consensus       147 Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~  197 (497)
                      || +|+..|+.+++++|+++|++.+..+..+.++++.+...++...+..|.
T Consensus       317 L~-~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll  366 (373)
T 2fo1_E          317 IM-LAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD  366 (373)
T ss_dssp             HH-HHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HH-HHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99 999999999999999999999998888999999999888877766553

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.95  E-value=9.6e-27  Score=226.18  Aligned_cols=172  Identities=20%  Similarity=0.185  Sum_probs=154.2

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------   82 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------   82 (497)
                      .++..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..| +.+++++|+++|++++..+.         
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  146 (299)
T 1s70_B           68 YANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG-YLDIAEYLISQGAHVGAVNSEGDTPLDIA  146 (299)
T ss_dssp             CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT-CHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHhCCCCCCCcCCCCCCHHHHH
Confidence            35669999999999999999999999999999999999999999999995 59999999999999988765         


Q ss_pred             ccCCCHHHHHHHHh-CCCCCc--------------------------ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCccc
Q 010920           83 AKRGLEPTVRLLLS-CGANAL--------------------------VRNDDCHTALGVARIKGHINVVRAIESHICYFC  135 (497)
Q Consensus        83 ~~~g~~~~v~~Ll~-~ga~~~--------------------------~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~  135 (497)
                      +..++.++++.|+. .+.+++                          ..+..|.||||+|+..|+.+++++|+++|++++
T Consensus       147 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~  226 (299)
T 1s70_B          147 EEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN  226 (299)
T ss_dssp             CSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT
T ss_pred             HhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC
Confidence            66677888876654 344432                          356789999999999999999999999999999


Q ss_pred             ccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcC
Q 010920          136 GWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQD  187 (497)
Q Consensus       136 ~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~  187 (497)
                        .+|..|.|||| +|+..|+.+++++|+++|++.+..+..+.++++.+.+.
T Consensus       227 --~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~  275 (299)
T 1s70_B          227 --IKDYDGWTPLH-AAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED  275 (299)
T ss_dssp             --CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG
T ss_pred             --CcCCCCCcHHH-HHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH
Confidence              89999999999 99999999999999999999999888899999999754

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.95  E-value=1e-26  Score=212.36  Aligned_cols=153  Identities=18%  Similarity=0.189  Sum_probs=142.8

Q ss_pred             hhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHH-HcCCCCCCcCc-------
Q 010920           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI-ELGANINAYRP-------   82 (497)
Q Consensus        11 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll-~~ga~~~~~~~-------   82 (497)
                      ..++..|.||||+|++.|+.++|++|+++|++++.+|..|.||||+|+..| +.+++++|+ ..+++++..+.       
T Consensus        33 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~~~~~~~Ll~~~~~~~~~~~~~g~t~L~  111 (201)
T 3hra_A           33 DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQG-RTEILAYMLKHATPDLNKHNRYGGNALI  111 (201)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHHSCCCTTCCCTTSCCSHH
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHhccCcccccccCCCCcHHH
Confidence            345679999999999999999999999999999999999999999999985 599999999 55778887665       


Q ss_pred             --ccCCCHHHHHHHHhCC-CCCcccCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCcccccccccCCCCHHHHHhhhc
Q 010920           83 --AKRGLEPTVRLLLSCG-ANALVRNDDCHTALGVARIKGH-----INVVRAIESHICYFCGWLREFYGPSFLEALAPQL  154 (497)
Q Consensus        83 --~~~g~~~~v~~Ll~~g-a~~~~~~~~g~T~Lh~A~~~g~-----~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~  154 (497)
                        +..|+.+++++|+++| ++++.+|..|.||||+|+..++     .+++++|+++|++++  .+|..|.|||| +|+..
T Consensus       112 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~  188 (201)
T 3hra_A          112 PAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS--IKDNSGRTAMD-YANQK  188 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC--ccCCCCCCHHH-HHHHc
Confidence              8899999999999999 9999999999999999999998     999999999999999  89999999999 99999


Q ss_pred             CCHHHHHHhhhCC
Q 010920          155 MSRKIWVVVIPCG  167 (497)
Q Consensus       155 ~~~~iv~~Ll~~g  167 (497)
                      ++.+++++|+++|
T Consensus       189 ~~~~~~~~Ll~~G  201 (201)
T 3hra_A          189 GYTEISKILAQYN  201 (201)
T ss_dssp             TCHHHHHHHHTCC
T ss_pred             CCHhHHHHHHhcC
Confidence            9999999999886

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.95  E-value=2.6e-27  Score=222.34  Aligned_cols=157  Identities=22%  Similarity=0.148  Sum_probs=144.9

Q ss_pred             hhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCC------CcCc--
Q 010920           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANIN------AYRP--   82 (497)
Q Consensus        11 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~------~~~~--   82 (497)
                      ..++..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..| +.+++++|++++++++      ..+.  
T Consensus        39 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~~~~~~~~~~~~~~~~~g  117 (236)
T 1ikn_D           39 NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQG-CLASVGVLTQSCTTPHLHSILKATNYNG  117 (236)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHT-CHHHHHHHHHSTTTTSSSCGGGCCCTTC
T ss_pred             hccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC-CHHHHHHHHhcccchhHHHHhhccCCCC
Confidence            345678999999999999999999999999999999999999999999995 5999999999997642      2222  


Q ss_pred             -------ccCCCHHHHHHHHhCCCCCcccCC-CCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhc
Q 010920           83 -------AKRGLEPTVRLLLSCGANALVRND-DCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL  154 (497)
Q Consensus        83 -------~~~g~~~~v~~Ll~~ga~~~~~~~-~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~  154 (497)
                             +..|+.+++++|+++|++++.++. .|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..
T Consensus       118 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~-~A~~~  194 (236)
T 1ikn_D          118 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN--RVTYQGYSPYQ-LTWGR  194 (236)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC--CCCTTCCCGGG-GCTTS
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--cccCCCCCHHH-HHHcc
Confidence                   788999999999999999999997 99999999999999999999999999999  89999999999 99999


Q ss_pred             CCHHHHHHhhhCCCCCC
Q 010920          155 MSRKIWVVVIPCGTANP  171 (497)
Q Consensus       155 ~~~~iv~~Ll~~ga~~~  171 (497)
                      ++.+++++|+++|++..
T Consensus       195 ~~~~~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          195 PSTRIQQQLGQLTLENL  211 (236)
T ss_dssp             SCHHHHHHHHTTSCGGG
T ss_pred             CchHHHHHHHHcchhhh
Confidence            99999999999999754

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.94  E-value=4.8e-26  Score=211.43  Aligned_cols=155  Identities=21%  Similarity=0.181  Sum_probs=147.0

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc--------
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGA-SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP--------   82 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga-~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~--------   82 (497)
                      .++..|.||||+|+..|+.+++++|+++++ +++.++..|.||||+|+..| +.+++++|+++|++++..+.        
T Consensus        53 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~g~~~~~~~~~g~t~L~~  131 (223)
T 2f8y_A           53 IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA-VEGMLEDLINSHADVNAVDDLGKSALHW  131 (223)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHT-CHHHHHHHHHTTCCTTCBCTTSCBHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhC-cHHHHHHHHHcCCCCcCcCCCCCcHHHH
Confidence            356799999999999999999999999997 89999999999999999995 49999999999999998775        


Q ss_pred             -ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 010920           83 -AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV  161 (497)
Q Consensus        83 -~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~  161 (497)
                       +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.++++
T Consensus       132 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~i~~  208 (223)
T 2f8y_A          132 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD--ITDHMDRLPRD-IAQERMHHDIVR  208 (223)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc--cccccCCCHHH-HHHHhcchHHHH
Confidence             78899999999999999999999999999999999999999999999999999  89999999999 999999999999


Q ss_pred             HhhhCCCCC
Q 010920          162 VVIPCGTAN  170 (497)
Q Consensus       162 ~Ll~~ga~~  170 (497)
                      +|+++|+..
T Consensus       209 ~L~~~g~~~  217 (223)
T 2f8y_A          209 LLDEYNLVR  217 (223)
T ss_dssp             HHHHTTCSS
T ss_pred             HHHHcCCCc
Confidence            999999865

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.94  E-value=1.8e-26  Score=219.76  Aligned_cols=190  Identities=14%  Similarity=0.109  Sum_probs=134.3

Q ss_pred             cCCCchHHHHHHHcCCHHHHH----HHHHcCCCccccC----CCCChHHHHHH---HhCCcHHHHHHHHHcCCCCCC---
Q 010920           14 RQSKDELLYQWVIAGDVDAIR----ALRSQGASLEWMD----KEGKTPLIVAC---MDSGLINVAKTLIELGANINA---   79 (497)
Q Consensus        14 ~~~G~T~Lh~Aa~~g~~~~v~----~Ll~~ga~~n~~d----~~G~TpLh~Aa---~~g~~~~~v~~Ll~~ga~~~~---   79 (497)
                      +.-|+|+||.|++.|+.+.|+    +|++.|++++..+    ..|.||||+|+   .. ++.+++++|+++|++++.   
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-g~~~~v~~Ll~~g~~~~~~~~   80 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSA-GRNDTIPILLDIAEKTGNMRE   80 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBT-TBCTHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhc-CCHHHHHHHHHhcccccchHh
Confidence            457899999999999999554    4455999998776    67999999999   44 569999999998865432   


Q ss_pred             --------cCc---------ccCCCHHHHHHHHhCCCCCcccC--------------CCCCCHHHHHHHcCCHHHHHHHH
Q 010920           80 --------YRP---------AKRGLEPTVRLLLSCGANALVRN--------------DDCHTALGVARIKGHINVVRAIE  128 (497)
Q Consensus        80 --------~~~---------~~~g~~~~v~~Ll~~ga~~~~~~--------------~~g~T~Lh~A~~~g~~~~v~~Ll  128 (497)
                              .+.         +..|+.++|++|+++|++++.++              ..|.||||+|+..|+.+++++|+
T Consensus        81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  160 (260)
T 3jxi_A           81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT  160 (260)
T ss_dssp             HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred             hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence                    111         55666666666666666666665              45666666666666666666666


Q ss_pred             H---CCCcccccccccCCCCHHHHHhhhcCC---------HHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHH
Q 010920          129 S---HICYFCGWLREFYGPSFLEALAPQLMS---------RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL  196 (497)
Q Consensus       129 ~---~g~~i~~~~~~~~G~T~Lh~~A~~~~~---------~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l  196 (497)
                      +   +|++++  .+|..|.|||| +|+..++         .+++++|+++|++.+...                      
T Consensus       161 ~~~~~ga~~~--~~d~~g~TpLh-~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~----------------------  215 (260)
T 3jxi_A          161 ENGHKQADLR--RQDSRGNTVLH-ALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDT----------------------  215 (260)
T ss_dssp             HCSSCCCCTT--CCCTTSCCHHH-HHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTC----------------------
T ss_pred             hccccCCCCc--ccCCCCCcHHH-HHHHhccCchhHHHHHHHHHHHHHHhCccccccc----------------------
Confidence            6   666666  56666666666 5555444         466666666655442111                      


Q ss_pred             hhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCC
Q 010920          197 WKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANE  231 (497)
Q Consensus       197 ~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~  231 (497)
                        ...+..+..|.||||+|+..++.+.+++|.+++
T Consensus       216 --~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  248 (260)
T 3jxi_A          216 --NLEALLNNDGLSPLMMAAKTGKIGIFQHIIRRE  248 (260)
T ss_dssp             --CGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             --chhhcccCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence              112567889999999999999999999998654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=5.8e-28  Score=225.94  Aligned_cols=184  Identities=11%  Similarity=-0.009  Sum_probs=154.2

Q ss_pred             hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHH
Q 010920           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVR   92 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~   92 (497)
                      .+.+|.||||+|+..|+.++|++|++.|+++|.+|..|.||||+|+..|+ .+++++|+                     
T Consensus        17 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~-~~~v~~Ll---------------------   74 (229)
T 2vge_A           17 ARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGAN-YSIVDFLI---------------------   74 (229)
T ss_dssp             TTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTC-HHHHHHHH---------------------
T ss_pred             cccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHH---------------------
Confidence            46689999999999999999999999999999999999999999999844 55555555                     


Q ss_pred             HHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccc-cCCCCHHHHHh--hhcCCHHHHHHhhhCCCC
Q 010920           93 LLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE-FYGPSFLEALA--PQLMSRKIWVVVIPCGTA  169 (497)
Q Consensus        93 ~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~-~~G~T~Lh~~A--~~~~~~~iv~~Ll~~ga~  169 (497)
                         ++|++++.+|..|.||||+|+..|+.+++++|+++|++++  ..+ ..|.|||| +|  +..++.+++++|+++|++
T Consensus        75 ---~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~--~~~~~~g~tpL~-~A~a~~~~~~~~v~~Ll~~ga~  148 (229)
T 2vge_A           75 ---TAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIF--ATTLSDGATAFE-KCDPYREGYADCATYLADVEQS  148 (229)
T ss_dssp             ---HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT--CCCSSTTCCTGG-GCCTTSTTHHHHHHHHHHHHHH
T ss_pred             ---HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--cccCCCCCCHHH-HHHHHhcChHHHHHHHHHcCCC
Confidence               5556666788999999999999999999999999999998  665 69999999 88  999999999999999999


Q ss_pred             CCCCCcccccccccCCcCcCHHHHHHHhhcC--CCCCCCCCCChHHHHHHhCChhHHH
Q 010920          170 NPSKPLRFELVIYPSLQDVQPRAVIALWKAK--IDEPKFHQPDPSLTIYDQATKIRYK  225 (497)
Q Consensus       170 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~--~~~~~~~g~~pl~~a~~~~~~~~~~  225 (497)
                      .+..+..+.++++........ .++...+++  ++..+..|.|||++|+..++...++
T Consensus       149 ~~~~~~~~~~~l~~~~~~~~~-~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~  205 (229)
T 2vge_A          149 MGLMNSGAVYALWDYSAEFGD-ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVP  205 (229)
T ss_dssp             TTTSGGGEEEESSCBCCSSTT-BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEE
T ss_pred             cccccCCchHHHHHHhhcccc-ccCccccccccccccCCCcccHHHHHHHcCCcceee
Confidence            888887777777765544332 233335565  6778999999999998888765443

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=2.7e-26  Score=205.89  Aligned_cols=157  Identities=21%  Similarity=0.210  Sum_probs=140.7

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------cc
Q 010920           15 QSKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AK   84 (497)
Q Consensus        15 ~~G~T~Lh~Aa~~g~~~~v~~Ll~~-ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~   84 (497)
                      ..+.++||.|++.|+.++|++|++. +.+++.+|..|.||||+|+..| +.+++++|+++|++++..+.         +.
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   81 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREG-RSAVVEMLIMRGARINVMNRGDDTPLHLAAS   81 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcC-cHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            4688999999999999999999998 5789999999999999999985 49999999999999988765         78


Q ss_pred             CCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 010920           85 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI  164 (497)
Q Consensus        85 ~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll  164 (497)
                      .|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+
T Consensus        82 ~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~-~A~~~~~~~~~~~L~  158 (179)
T 3f6q_A           82 HGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS--ICNKYGEMPVD-KAKAPLRELLRERAE  158 (179)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS--BCCTTSCCGGG-GSCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc--hhccCCCCcHH-HHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999998  89999999999 899999999999999


Q ss_pred             hCCCCCCCCCc
Q 010920          165 PCGTANPSKPL  175 (497)
Q Consensus       165 ~~ga~~~~~~~  175 (497)
                      ++|++.+..+.
T Consensus       159 ~~g~~~~~~~~  169 (179)
T 3f6q_A          159 KMGQNLNRIPY  169 (179)
T ss_dssp             HTTCCCSCBCC
T ss_pred             HhhcCcccCCc
Confidence            99998876553

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=1.9e-26  Score=203.98  Aligned_cols=151  Identities=21%  Similarity=0.198  Sum_probs=123.1

Q ss_pred             hcCCCchHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------
Q 010920           13 QRQSKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------   82 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~-ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------   82 (497)
                      .+..|.|+||.|++.|+.++++.|++. +.+++..+..|.||||+|+..| +.+++++|+++|++++..+.         
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   82 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYN-RVSVVEYLLQHGADVHAKDKGGLVPLHNA   82 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcC-hHHHHHHHHhcCCCCCccCCCCCCHHHHH
Confidence            367899999999999999999999985 4688888999999999999984 49999999998888877665         


Q ss_pred             ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010920           83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV  162 (497)
Q Consensus        83 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~  162 (497)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|.. ++.+++++
T Consensus        83 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~a~~-~~~~i~~~  158 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT--KKNRDGNTPLD-LVKD-GDTDIQDL  158 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCTGG-GSCT-TCHHHHHH
T ss_pred             HHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--ccCCCCCChhH-hHhc-CChHHHHH
Confidence            66778888888888888888888888888888888888888888888888877  77888888888 6555 77788888


Q ss_pred             hhhCCC
Q 010920          163 VIPCGT  168 (497)
Q Consensus       163 Ll~~ga  168 (497)
                      |+++|+
T Consensus       159 L~~~gA  164 (165)
T 3twr_A          159 LRGDAA  164 (165)
T ss_dssp             HHTC--
T ss_pred             Hhhccc
Confidence            877764

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=4.5e-26  Score=199.02  Aligned_cols=142  Identities=21%  Similarity=0.221  Sum_probs=127.6

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccCCC
Q 010920           17 KDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKRGL   87 (497)
Q Consensus        17 G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~g~   87 (497)
                      +.|+||.|++.|+.++|++|++.|++++ .+..|.||||+|+..|+ .+++++|+++|++++..+.         +..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGH-FSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTC-HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCC-HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence            4689999999999999999999999887 58899999999999954 9999999999999887765         77788


Q ss_pred             HHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHh
Q 010920           88 EPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV  163 (497)
Q Consensus        88 ~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~L  163 (497)
                      .+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..|+.+++++|
T Consensus        80 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~i~~~L  152 (153)
T 1awc_B           80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH--TQSKFCKTAFD-ISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHcCCHHHHHHh
Confidence            999999999999998889999999999999999999999999999888  78889999999 88899999998876

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.94  E-value=1.4e-26  Score=224.08  Aligned_cols=188  Identities=12%  Similarity=0.026  Sum_probs=157.4

Q ss_pred             hhchhhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc----
Q 010920            7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP----   82 (497)
Q Consensus         7 ~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~----   82 (497)
                      +.+......+|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..| +.+++++|+++|++++..+.    
T Consensus        52 ~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g-~~~~v~~Ll~~ga~~~~~~~~g~~  130 (285)
T 3kea_A           52 NAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSG-NMQTVKLFVKKNWRLMFYGKTGWK  130 (285)
T ss_dssp             HTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHHCGGGGGCSSSGGG
T ss_pred             hCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcC-CHHHHHHHHhcCCCCCccCCCCCC
Confidence            3343333446999999999999999999999999999999999999999999985 59999999999999887653    


Q ss_pred             ------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCH-HHHHhhhcC
Q 010920           83 ------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSF-LEALAPQLM  155 (497)
Q Consensus        83 ------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~-Lh~~A~~~~  155 (497)
                            +..|+.+++++|+++|+++... ..|.||||+|+..|+.+++++|+++|++++  .+|..|.|| || +|+..+
T Consensus       131 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n--~~~~~g~t~~L~-~A~~~~  206 (285)
T 3kea_A          131 TSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTN--TNNSLLFIPDIK-LAIDNK  206 (285)
T ss_dssp             SHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTC--TTCCCBCCTTHH-HHHHHT
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCC--cccCCCCChHHH-HHHHcC
Confidence                  7889999999999999886322 289999999999999999999999999999  899999998 99 999999


Q ss_pred             CHHHHHHhhhCCCCCCCCCcccccccccCCcCcCH--HHHHHHhhcCCCCCCC
Q 010920          156 SRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQP--RAVIALWKAKIDEPKF  206 (497)
Q Consensus       156 ~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~--~~~~~l~~~~~~~~~~  206 (497)
                      +.+++++|+++|++.+..+. .      +...++.  ..++...+.++.....
T Consensus       207 ~~~~v~~Ll~~gad~~~~~~-~------a~~~~~~~iv~~Ll~~g~~~~~~~~  252 (285)
T 3kea_A          207 DIEMLQALFKYDINIYSANL-E------NVLLDDAEIAKMIIEKHVEYKSDSY  252 (285)
T ss_dssp             CHHHHHHHTTSCBCSTTTTG-G------GGTTTCHHHHHHHHHHHHHHTTCTT
T ss_pred             CHHHHHHHHHcCCCCCCCCh-h------hhhcCCHHHHHHHHHcCCCCCCccc
Confidence            99999999999999877762 1      1223333  3344446666655444

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.94  E-value=1.1e-26  Score=220.88  Aligned_cols=154  Identities=16%  Similarity=0.093  Sum_probs=141.5

Q ss_pred             hcCCCchHHHHHHHc---CCHHHHHHHHHcCCCccc-----------cCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCC
Q 010920           13 QRQSKDELLYQWVIA---GDVDAIRALRSQGASLEW-----------MDKEGKTPLIVACMDSGLINVAKTLIELGANIN   78 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~---g~~~~v~~Ll~~ga~~n~-----------~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~   78 (497)
                      ++..|.||||+|+..   |+.++|++|+++|++++.           +|..|.||||+|+..| +.+++++|+++|++++
T Consensus        39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g-~~~~v~~Ll~~ga~~~  117 (256)
T 2etb_A           39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKR-SLQCVKLLVENGADVH  117 (256)
T ss_dssp             BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTT-CHHHHHHHHHTTCCTT
T ss_pred             CCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcC-CHHHHHHHHHcCCCCC
Confidence            577999999999999   999999999999987763           3477999999999985 5999999999999998


Q ss_pred             CcC---------------c-------ccCCCHHHHHHHHh---CCCCCcccCCCCCCHHHHHHH--cCCHH-------HH
Q 010920           79 AYR---------------P-------AKRGLEPTVRLLLS---CGANALVRNDDCHTALGVARI--KGHIN-------VV  124 (497)
Q Consensus        79 ~~~---------------~-------~~~g~~~~v~~Ll~---~ga~~~~~~~~g~T~Lh~A~~--~g~~~-------~v  124 (497)
                      ..+               +       +..|+.+++++|++   +|++++.+|..|+||||+|+.  .++.+       ++
T Consensus       118 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv  197 (256)
T 2etb_A          118 LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMY  197 (256)
T ss_dssp             CCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred             cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHH
Confidence            764               3       78899999999999   999999999999999999999  88888       99


Q ss_pred             HHHHHCCCcc-------cccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCC
Q 010920          125 RAIESHICYF-------CGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTAN  170 (497)
Q Consensus       125 ~~Ll~~g~~i-------~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~  170 (497)
                      ++|+++|+++       +  .+|..|.|||| +|+..|+.+++++|+++|.+.
T Consensus       198 ~~Ll~~ga~~~~~~~~~~--~~d~~g~tpL~-~A~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          198 DGLLQMGARLCPTVQLEE--ISNHQGLTPLK-LAAKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             HHHHHHHHHHSTTCCGGG--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCccccccccc--ccCCCCCCHHH-HHHHhCCHHHHHHHHhCCCCC
Confidence            9999999999       7  89999999999 999999999999999998653

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.93  E-value=2.3e-25  Score=197.84  Aligned_cols=149  Identities=24%  Similarity=0.247  Sum_probs=132.9

Q ss_pred             hHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHH
Q 010920           52 TPLIVACMDSGLINVAKTLIELGANINAYRP---------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN  122 (497)
Q Consensus        52 TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~  122 (497)
                      ++|+.||.+|+ .++|++||++|+++|.++.         +..++.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus         6 ~~L~~Aa~~G~-~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~   84 (169)
T 4gpm_A            6 KRLIEAAENGN-KDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE   84 (169)
T ss_dssp             HHHHHHHHTTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCC-HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence            57999999965 9999999999999999876         8889999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCCC
Q 010920          123 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKID  202 (497)
Q Consensus       123 ~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~  202 (497)
                      +|++|+++|++++  .+|.+|+|||| +|+..|+.+++++|+++|++.+                               
T Consensus        85 ~v~~Ll~~gadvn--~~d~~G~TpLh-~A~~~g~~~~v~~Ll~~gad~~-------------------------------  130 (169)
T 4gpm_A           85 VVKLLISKGADVN--AKDSDGRTPLH-HAAENGHKEVVKLLISKGADVN-------------------------------  130 (169)
T ss_dssp             HHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCTT-------------------------------
T ss_pred             HHHHHHHCcCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCcc-------------------------------
Confidence            9999999999999  89999999999 9999999999999999886653                               


Q ss_pred             CCCCCCCChHHHHHHhCChhHHHHHHhCCCCHH
Q 010920          203 EPKFHQPDPSLTIYDQATKIRYKFASANEGDKH  235 (497)
Q Consensus       203 ~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~~~  235 (497)
                      ..+..|.|||++|+..++.+.+++|.+.+.+.+
T Consensus       131 ~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A          131 TSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            345679999999999999999999998877654

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=1.7e-26  Score=197.62  Aligned_cols=129  Identities=19%  Similarity=0.211  Sum_probs=117.0

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHH
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTV   91 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v   91 (497)
                      .++..|.||||+|++.|+.+++++|+++|++++.+|..|.||||+|+. |+ .+++++|+++|                 
T Consensus         7 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~-~~~v~~Ll~~g-----------------   67 (136)
T 1d9s_A            7 MLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GS-AQVAELLLLHG-----------------   67 (136)
T ss_dssp             CCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SC-HHHHHHHHHHT-----------------
T ss_pred             CCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CC-HHHHHHHHHCC-----------------
Confidence            356699999999999999999999999999999999999999999999 65 66666666554                 


Q ss_pred             HHHHhCCCCCcccCCC-CCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCC
Q 010920           92 RLLLSCGANALVRNDD-CHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA  169 (497)
Q Consensus        92 ~~Ll~~ga~~~~~~~~-g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~  169 (497)
                             ++++.+|.. |.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++
T Consensus        68 -------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           68 -------AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD--VCDAWGRLPVD-LAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             -------CCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCC--CCSSSSSCHHH-HHHHHTCHHHHHHHHHHHCC
T ss_pred             -------CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--ccCCCCCCHHH-HHHHcCCHHHHHHHHHcCCC
Confidence                   555667888 9999999999999999999999999999  89999999999 99999999999999999875

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.93  E-value=5.1e-26  Score=219.00  Aligned_cols=153  Identities=20%  Similarity=0.259  Sum_probs=139.4

Q ss_pred             hhhcCCCchHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCChHHHHHH-----HhCCcHHHHHHHHHcCCCCCCcCc--
Q 010920           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGA-SLEWMDKEGKTPLIVAC-----MDSGLINVAKTLIELGANINAYRP--   82 (497)
Q Consensus        11 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga-~~n~~d~~G~TpLh~Aa-----~~g~~~~~v~~Ll~~ga~~~~~~~--   82 (497)
                      +.+|..|.||||+|+..|+.++|++|++.|+ +++..|..|.||||+|+     .. ++.+++++|++.|++++..+.  
T Consensus       105 n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~-~~~~~v~~Ll~~g~~~~~~~~~g  183 (276)
T 4hbd_A          105 NIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQ-DDIETVLQLFRLGNINAKASQAG  183 (276)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSH-HHHHHHHHHHHHSCTTCCCTTTC
T ss_pred             cCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhh-hhHHHHHHHHHcCCCccccCCCC
Confidence            4467799999999999999999999999998 99999999999999999     44 458999999999988777554  


Q ss_pred             -------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCcccccccccCCCCHHHHHhhhc
Q 010920           83 -------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES-HICYFCGWLREFYGPSFLEALAPQL  154 (497)
Q Consensus        83 -------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~-~g~~i~~~~~~~~G~T~Lh~~A~~~  154 (497)
                             +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++ .|++++  .+|..|.|||| +|+..
T Consensus       184 ~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~--~~d~~g~TpL~-~A~~~  260 (276)
T 4hbd_A          184 QTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDIS--LTDRDGSTALM-VALDA  260 (276)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTT--CCCTTSCCHHH-HHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCc--CcCCCCCCHHH-HHHHc
Confidence                   78899999999999999999999999999999999999999999999 899998  89999999999 89999


Q ss_pred             CCHHHHHHhhhCC
Q 010920          155 MSRKIWVVVIPCG  167 (497)
Q Consensus       155 ~~~~iv~~Ll~~g  167 (497)
                      |+.+++++|++++
T Consensus       261 g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          261 GQSEIASMLYSRM  273 (276)
T ss_dssp             TCHHHHHHHHHHC
T ss_pred             CCHHHHHHHHhcc
Confidence            9999999999875

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.93  E-value=2e-26  Score=221.27  Aligned_cols=155  Identities=17%  Similarity=0.112  Sum_probs=140.3

Q ss_pred             hcCCCchHHHHHHHc---CCHHHHHHHHHcCCCc-------cc----cCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCC
Q 010920           13 QRQSKDELLYQWVIA---GDVDAIRALRSQGASL-------EW----MDKEGKTPLIVACMDSGLINVAKTLIELGANIN   78 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~---g~~~~v~~Ll~~ga~~-------n~----~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~   78 (497)
                      ++..|.||||+|+..   |+.++|++|+++|+++       +.    +|..|.||||+|+..| +.+++++|+++|++++
T Consensus        50 ~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g-~~~~v~~Ll~~ga~~~  128 (273)
T 2pnn_A           50 DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERR-NMTLVTLLVENGADVQ  128 (273)
T ss_dssp             CTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTT-CHHHHHHHHHTTCCTT
T ss_pred             cCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcC-CHHHHHHHHHCCCCcC
Confidence            367999999999987   9999999999998652       33    5678999999999985 5999999999999998


Q ss_pred             CcC----------------c-------ccCCCHHHHHHHHh---CCCCCcccCCCCCCHHHHHHHcCC---------HHH
Q 010920           79 AYR----------------P-------AKRGLEPTVRLLLS---CGANALVRNDDCHTALGVARIKGH---------INV  123 (497)
Q Consensus        79 ~~~----------------~-------~~~g~~~~v~~Ll~---~ga~~~~~~~~g~T~Lh~A~~~g~---------~~~  123 (497)
                      ..+                .       +..|+.+++++|++   +|++++.+|..|+||||+|+..|+         .++
T Consensus       129 ~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~  208 (273)
T 2pnn_A          129 AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSM  208 (273)
T ss_dssp             CCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHH
T ss_pred             ccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHH
Confidence            865                2       78899999999999   999999999999999999999998         899


Q ss_pred             HHHHHHCCCcccc-----cccccCCCCHHHHHhhhcCCHHHHHHhhhCCCC
Q 010920          124 VRAIESHICYFCG-----WLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA  169 (497)
Q Consensus       124 v~~Ll~~g~~i~~-----~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~  169 (497)
                      +++|+++|++++.     ..+|..|.|||| +|+..|+.+++++|+++|+.
T Consensus       209 v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~-~A~~~g~~~iv~~Ll~~ga~  258 (273)
T 2pnn_A          209 YNEILILGAKLHPTLKLEEITNRKGLTPLA-LAASSGKIGVLAYILQREIH  258 (273)
T ss_dssp             HHHHHHHHHHHCTTCCGGGCCCTTSCCHHH-HHHHTTCHHHHHHHHHHHTC
T ss_pred             HHHHHHhhhhcccccccccccCCCCCCHHH-HHHHhChHHHHHHHHHCCCC
Confidence            9999999999962     148999999999 99999999999999999994

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.93  E-value=1.6e-25  Score=209.67  Aligned_cols=181  Identities=18%  Similarity=0.169  Sum_probs=164.4

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCC-CCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc--------
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDK-EGKTPLIVACMDSGLINVAKTLIELGANINAYRP--------   82 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~-~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~--------   82 (497)
                      .++..|.||||+|++.|+.++|++|+++|++++..+. .|.||||+|+..|+ .+++++|+++|++++..+.        
T Consensus        37 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~g~t~l~~  115 (240)
T 3eu9_A           37 QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH-LSMVVQLMKYGADPSLIDGEGCSCIHL  115 (240)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTC-HHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCC-HHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            3567899999999999999999999999998876554 49999999999954 9999999999999988765        


Q ss_pred             -ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCC-HHHHHHHHHCCCccccccccc-CCCCHHHHHhhhcCCHHH
Q 010920           83 -AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH-INVVRAIESHICYFCGWLREF-YGPSFLEALAPQLMSRKI  159 (497)
Q Consensus        83 -~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~-~~~v~~Ll~~g~~i~~~~~~~-~G~T~Lh~~A~~~~~~~i  159 (497)
                       +..|+.+++++|+++|++++..+..|.||||+|+..++ .+++++|++.|++++  ..+. .|.|||| +|+..++.++
T Consensus       116 A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~--~~~~~~g~t~L~-~A~~~~~~~~  192 (240)
T 3eu9_A          116 AAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVN--LGDKYHKNTALH-WAVLAGNTTV  192 (240)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTT--CCCTTTCCCHHH-HHHHHTCHHH
T ss_pred             HHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcc--hhhccCCCcHHH-HHHHcCCHHH
Confidence             78899999999999999999999999999999997776 899999999999998  6776 8999999 9999999999


Q ss_pred             HHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHH
Q 010920          160 WVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL  196 (497)
Q Consensus       160 v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l  196 (497)
                      +++|+++|++.+..+..+.++++.+.+.++...+..+
T Consensus       193 v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L  229 (240)
T 3eu9_A          193 ISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL  229 (240)
T ss_dssp             HHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence            9999999999998888899999999988887766655

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.93  E-value=3.2e-26  Score=217.98  Aligned_cols=156  Identities=19%  Similarity=0.099  Sum_probs=139.8

Q ss_pred             cCCCchHHHHHH---HcCCHHHHHHHHHcCCC-----------ccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCC
Q 010920           14 RQSKDELLYQWV---IAGDVDAIRALRSQGAS-----------LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA   79 (497)
Q Consensus        14 ~~~G~T~Lh~Aa---~~g~~~~v~~Ll~~ga~-----------~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~   79 (497)
                      +..|.||||+|+   +.|+.++|++|++.|++           ++..|..|.||||+|+..| +.++|++|+++|++++.
T Consensus        43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g-~~~~v~~Ll~~ga~~~~  121 (260)
T 3jxi_A           43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERR-CKHYVELLVEKGADVHA  121 (260)
T ss_dssp             TTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTT-CHHHHHHHHHTTCCTTC
T ss_pred             cCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcC-CHHHHHHHHhCCCCcCc
Confidence            367999999999   77999999999998754           4555668999999999984 59999999999999998


Q ss_pred             cC----------------c-------ccCCCHHHHHHHHh---CCCCCcccCCCCCCHHHHHHHcCC---------HHHH
Q 010920           80 YR----------------P-------AKRGLEPTVRLLLS---CGANALVRNDDCHTALGVARIKGH---------INVV  124 (497)
Q Consensus        80 ~~----------------~-------~~~g~~~~v~~Ll~---~ga~~~~~~~~g~T~Lh~A~~~g~---------~~~v  124 (497)
                      .+                +       +..|+.+++++|++   +|++++.+|..|+||||+|+..++         .+++
T Consensus       122 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v  201 (260)
T 3jxi_A          122 QARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMY  201 (260)
T ss_dssp             CCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred             cccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHH
Confidence            86                2       88999999999999   999999999999999999999888         7999


Q ss_pred             HHHHHCCCcccc-----cccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCC
Q 010920          125 RAIESHICYFCG-----WLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANP  171 (497)
Q Consensus       125 ~~Ll~~g~~i~~-----~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~  171 (497)
                      ++|+++|++++.     ..+|..|.|||| +|+..|+.+++++|+++|.+..
T Consensus       202 ~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~-~A~~~g~~~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          202 DLLLIKCAKLFPDTNLEALLNNDGLSPLM-MAAKTGKIGIFQHIIRREIADA  252 (260)
T ss_dssp             HHHHHHHHHHCTTCCGGGCCCTTSCCHHH-HHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcccccccchhhcccCCCCCHHH-HHHHcCCHHHHHHHHHhCCCcc
Confidence            999999999831     179999999999 9999999999999999987643

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=2.6e-25  Score=194.58  Aligned_cols=144  Identities=26%  Similarity=0.289  Sum_probs=133.6

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccCC
Q 010920           17 KDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKRG   86 (497)
Q Consensus        17 G~T~Lh~Aa~~g~~~~v~~Ll~~-ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~g   86 (497)
                      |.||||+|++.|+.+++++|++. +.+++.+|..|.||||+ +.. ++.+++++|+++|++++..+.         +..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHc-CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence            57999999999999999999998 35999999999999999 877 459999999999999988765         7889


Q ss_pred             CHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhC
Q 010920           87 LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC  166 (497)
Q Consensus        87 ~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~  166 (497)
                      +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++ ++++  .+|..|.|||| +|+..++.+++++|+++
T Consensus        80 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~--~~~~~g~t~l~-~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH--RRDARGLTPLE-LALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT--CCCTTSCCHHH-HHHHSCCHHHHHHHHTT
T ss_pred             cHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC--CcCCCCCCHHH-HHHHcCcHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999 8888  89999999999 99999999999999864

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.93  E-value=9e-26  Score=217.28  Aligned_cols=181  Identities=15%  Similarity=0.112  Sum_probs=162.7

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHcCCC--ccccCCCCChHHHHHHHhCCcHHHHHHHHHcCC-CCCCcCc---------
Q 010920           15 QSKDELLYQWVIAGDVDAIRALRSQGAS--LEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRP---------   82 (497)
Q Consensus        15 ~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~--~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga-~~~~~~~---------   82 (497)
                      ..+.+++|.|+..|+.+.++.|++.+.+  +|.+|..|.||||+|+..|+ .+++++|++.|+ +++..+.         
T Consensus        74 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~-~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a  152 (276)
T 4hbd_A           74 LACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHAN-FPVVQQLLDSGVCKVDKQNRAGYSPIMLT  152 (276)
T ss_dssp             HHHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTC-HHHHHHHHHTSCCCTTCCCTTSCCHHHHG
T ss_pred             HHhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCC-HHHHHHHHHCCCCcCCCCCCCCCCHHHHH
Confidence            3467889999999999999999988766  89999999999999999855 999999999998 8888765         


Q ss_pred             c-----cCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCH
Q 010920           83 A-----KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSR  157 (497)
Q Consensus        83 ~-----~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~  157 (497)
                      +     ..++.+++++|++.|++++..+..|.||||+|+..|+.++|++|+++|++++  .+|..|.|||| +|+..|+.
T Consensus       153 ~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n--~~d~~G~TpLh-~A~~~g~~  229 (276)
T 4hbd_A          153 ALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVN--VQDDDGSTALM-CACEHGHK  229 (276)
T ss_dssp             GGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCH
T ss_pred             HHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC--CCCCCCCCHHH-HHHHCCCH
Confidence            2     5688999999999999999999999999999999999999999999999999  89999999999 99999999


Q ss_pred             HHHHHhhh-CCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhC
Q 010920          158 KIWVVVIP-CGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN  230 (497)
Q Consensus       158 ~iv~~Ll~-~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~  230 (497)
                      +++++|++ .|++.                               +..+..|.|||++|+..++.+.+++|...
T Consensus       230 ~iv~~Ll~~~gad~-------------------------------~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  272 (276)
T 4hbd_A          230 EIAGLLLAVPSCDI-------------------------------SLTDRDGSTALMVALDAGQSEIASMLYSR  272 (276)
T ss_dssp             HHHHHHHTSTTCCT-------------------------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCC-------------------------------cCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            99999998 66554                               44556799999999999999999988754

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=4.1e-25  Score=188.96  Aligned_cols=126  Identities=19%  Similarity=0.266  Sum_probs=113.2

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHH
Q 010920           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRL   93 (497)
Q Consensus        14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~   93 (497)
                      ...|.||||+|++.|+.++|++|+++|++++.+|..|.||||+|+..|+ .+++++|+                      
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll----------------------   67 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGH-LEIVEVLL----------------------   67 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC-HHHHHHHH----------------------
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC-HHHHHHHH----------------------
Confidence            5678999999999999999999999999999999999999999999854 55555555                      


Q ss_pred             HHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCC
Q 010920           94 LLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCG  167 (497)
Q Consensus        94 Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~g  167 (497)
                        ++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|
T Consensus        68 --~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~tpl~-~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           68 --KNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN--AQDKFGKTAFD-ISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             --HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHC-
T ss_pred             --HcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--CcCCCCCCHHH-HHHHCCCHHHHHHHHHcC
Confidence              5556666788899999999999999999999999999999  89999999999 999999999999999876

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=1.1e-25  Score=197.24  Aligned_cols=141  Identities=18%  Similarity=0.182  Sum_probs=112.8

Q ss_pred             hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHH
Q 010920           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVR   92 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~   92 (497)
                      .+..|.||||+|++.|+.++|++|+++|++++.+|..|.||||+|+ .|+ .++                        ++
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~-~~~------------------------v~   61 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGS-ARV------------------------AE   61 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTC-HHH------------------------HH
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCC-HHH------------------------HH
Confidence            4678999999999999999999999999999999999999999985 533 444                        45


Q ss_pred             HHHhCCCCCcccCCCCCC-HHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCC
Q 010920           93 LLLSCGANALVRNDDCHT-ALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANP  171 (497)
Q Consensus        93 ~Ll~~ga~~~~~~~~g~T-~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~  171 (497)
                      +|+++|++++.+|..|.| |||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++..
T Consensus        62 ~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~~~~~~v~~Ll~~ga~~~  138 (156)
T 1bi7_B           62 LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD--VRDAWGRLPVD-LAEELGHRDVARYLRAAAGGTR  138 (156)
T ss_dssp             HHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSS--CCCTTCCCHHH-HHHHHTCHHHHHHHSSCC----
T ss_pred             HHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHHhCHHHHHHHHHHcCCCCC
Confidence            555556666778899999 9999999999999999999999999  89999999999 9999999999999999999987


Q ss_pred             CCCcccccccc
Q 010920          172 SKPLRFELVIY  182 (497)
Q Consensus       172 ~~~~~~~~~l~  182 (497)
                      ..+..+.++..
T Consensus       139 ~~~~~g~t~~~  149 (156)
T 1bi7_B          139 GSNHARIDAAE  149 (156)
T ss_dssp             -----------
T ss_pred             ccCcCcCcccc
Confidence            66654554433

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=1.3e-24  Score=182.49  Aligned_cols=126  Identities=23%  Similarity=0.326  Sum_probs=114.9

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHH
Q 010920           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLL   95 (497)
Q Consensus        16 ~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll   95 (497)
                      +|.||||+|++.|+.+++++|+++|++++.+|..|.||||+|+..|+ .+++++|+                        
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~-~~~~~~Ll------------------------   55 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH-LEVVKLLL------------------------   55 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTC-HHHHHHHH------------------------
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCc-HHHHHHHH------------------------
Confidence            58999999999999999999999999999999999999999999854 55555555                        


Q ss_pred             hCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCC
Q 010920           96 SCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA  169 (497)
Q Consensus        96 ~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~  169 (497)
                      ++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++
T Consensus        56 ~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           56 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN--AKDKNGRTPLH-LAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHTCC
T ss_pred             HcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHHcCcHHHHHHHHHcCCC
Confidence            5555666788899999999999999999999999999999  89999999999 99999999999999999985

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.92  E-value=8.8e-26  Score=212.57  Aligned_cols=156  Identities=9%  Similarity=-0.011  Sum_probs=105.4

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------cc
Q 010920           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AK   84 (497)
Q Consensus        14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~   84 (497)
                      +.+|.||||.|++.|+.++++.|+++|++++.. ..|.||||+|+..|+ .+++++|++.|++++..+.         +.
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~-~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGE-FDLVQRIIYEVDDPSLPNDEGITALHNAVC   79 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTC-HHHHHHHTSTTSSCCCCCTTSCCHHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCC-HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            458999999999999999999999999999864 688999999999955 9999999999999888765         77


Q ss_pred             CCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCC-CHHHHHh--hhcCCHHHHH
Q 010920           85 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGP-SFLEALA--PQLMSRKIWV  161 (497)
Q Consensus        85 ~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~-T~Lh~~A--~~~~~~~iv~  161 (497)
                      .|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  ..+..|. |||| +|  +..|+.++++
T Consensus        80 ~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~~~~t~l~-~a~~~~~g~~~~~~  156 (239)
T 1ycs_B           80 AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF--AMTYSDMQTAAD-KCEEMEEGYTQCSQ  156 (239)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCSSSCCCHHH-HCCSSSTTCCCHHH
T ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--eecCCCCcchHH-HHHHhhhccHHHHH
Confidence            888999999999999999999999999999999999999999999999988  7777776 9999 77  7788899999


Q ss_pred             HhhhCCCCCCCCC
Q 010920          162 VVIPCGTANPSKP  174 (497)
Q Consensus       162 ~Ll~~ga~~~~~~  174 (497)
                      +|+.+|++.+..+
T Consensus       157 ~Ll~~~a~~~~~~  169 (239)
T 1ycs_B          157 FLYGVQEKMGIMN  169 (239)
T ss_dssp             HHHHHHHHTTTTG
T ss_pred             HHHHhhhcccccc
Confidence            9998888776554

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.92  E-value=2.3e-25  Score=219.84  Aligned_cols=161  Identities=11%  Similarity=0.061  Sum_probs=112.8

Q ss_pred             hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCc---HHHHHHHHHcC-CCCCCcCc------
Q 010920           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGL---INVAKTLIELG-ANINAYRP------   82 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~---~~~v~~Ll~~g-a~~~~~~~------   82 (497)
                      ++..|.||||+|+..|+.++|++||++|++++.+|..|.||||+|+.. ++   .++++.|++++ ++++..+.      
T Consensus       127 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~-g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpL  205 (327)
T 1sw6_A          127 VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKS-VNNYDSGTFEALLDYLYPCLILEDSMNRTIL  205 (327)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHS-SHHHHTTCHHHHHHHHGGGGGEECTTCCCHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHh-cccccHHHHHHHHHhhhccccCCCCCCCCHH
Confidence            466888888888888888888888888888888888888888888887 44   46777777765 55665544      


Q ss_pred             ---cc----CCCHHHHHHHHhC--------------------CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCccc
Q 010920           83 ---AK----RGLEPTVRLLLSC--------------------GANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC  135 (497)
Q Consensus        83 ---~~----~g~~~~v~~Ll~~--------------------ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~  135 (497)
                         +.    .|+.+++++|++.                    |++++.++..|.||||+|+.      +++|+++  +++
T Consensus       206 h~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n  277 (327)
T 1sw6_A          206 HHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--MLN  277 (327)
T ss_dssp             HHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH--TTT
T ss_pred             HHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--CCC
Confidence               33    6778888877765                    77777777888888887774      7777776  455


Q ss_pred             ccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCC
Q 010920          136 GWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSL  185 (497)
Q Consensus       136 ~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~  185 (497)
                        .+|..|+|||| +|+..|+.+++++|+++|++.+..+..+.++++.+.
T Consensus       278 --~~d~~G~TpLh-~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~  324 (327)
T 1sw6_A          278 --AQDSNGDTCLN-IAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  324 (327)
T ss_dssp             --CCCTTSCCHHH-HHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             --CCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence              67788888888 788888888888888888777666655555555554

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.91  E-value=1.6e-24  Score=185.39  Aligned_cols=129  Identities=19%  Similarity=0.215  Sum_probs=111.7

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHH
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTV   91 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v   91 (497)
                      .++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+ .+++++|+                    
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-~~~~~~Ll--------------------   63 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGH-LKVVELLL--------------------   63 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTC-HHHHHHHH--------------------
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC-HHHHHHHH--------------------
Confidence            457899999999999999999999999999999999999999999999844 55555555                    


Q ss_pred             HHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCC
Q 010920           92 RLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGT  168 (497)
Q Consensus        92 ~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga  168 (497)
                          ++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..+..+++++|.+.+.
T Consensus        64 ----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~-~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           64 ----QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN--AVNIFGLRPVD-YTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             ----HTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCGGG-GCCCHHHHHHHSCC-----
T ss_pred             ----HcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCHHH-HHhhccHHHHHhhcccccc
Confidence                5556666788899999999999999999999999999999  89999999999 9999999999988876653

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.90  E-value=1.8e-23  Score=189.53  Aligned_cols=154  Identities=19%  Similarity=0.109  Sum_probs=135.7

Q ss_pred             CccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccCCCHHHHHHHHhCCCCCcccCCCCCCHH
Q 010920           42 SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKRGLEPTVRLLLSCGANALVRNDDCHTAL  112 (497)
Q Consensus        42 ~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~L  112 (497)
                      .+|.+|..|.||||+|+..|+ .+++++|+++|++++..+.         +..|+.+++++|+++|++++.+|..|.|||
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~-~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L  105 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGM-ENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPL  105 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTC-GGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHH
T ss_pred             HHhCcCCCCCCHHHHHHHcCC-HHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence            456789999999999999955 9999999999999887765         788999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHH
Q 010920          113 GVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRA  192 (497)
Q Consensus       113 h~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~  192 (497)
                      |+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++.+                     
T Consensus       106 ~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~---------------------  161 (192)
T 2rfm_A          106 MWSIIFGYSEMSYFLLEHGANVN--DRNLEGETPLI-VASKYGRSEIVKKLLELGADIS---------------------  161 (192)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSS--CCCTTCCCHHH-HHHHHTCHHHHHHHHHTTCCTT---------------------
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCCC---------------------
Confidence            99999999999999999999998  88999999999 8999999999999998886553                     


Q ss_pred             HHHHhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhC
Q 010920          193 VIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN  230 (497)
Q Consensus       193 ~~~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~  230 (497)
                                ..+..|.||+++|+..++.+.+++|.+.
T Consensus       162 ----------~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  189 (192)
T 2rfm_A          162 ----------ARDLTGLTAEASARIFGRQEVIKIFTEV  189 (192)
T ss_dssp             ----------CBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred             ----------CcCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence                      3446789999999999999999988653

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.90  E-value=2.3e-24  Score=212.69  Aligned_cols=205  Identities=11%  Similarity=-0.062  Sum_probs=142.0

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHHcCCCcccc-----------------CCCCChHHHHHHHhCCcHHHHHHHHHcCCC
Q 010920           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWM-----------------DKEGKTPLIVACMDSGLINVAKTLIELGAN   76 (497)
Q Consensus        14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~-----------------d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~   76 (497)
                      +..|.|+++     |+.++|++||++|++++..                 .....+.+|+|+.. ...+++++|++.|++
T Consensus        49 ~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~l~~~g~d  122 (327)
T 1sw6_A           49 LPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDS-LLQEVNDAFPNTQLN  122 (327)
T ss_dssp             BCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHH-HHHHHHHHCTTSCCC
T ss_pred             CCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHh-hHHHHHHHHHhcCCC
Confidence            346777765     6777777777777665431                 11111224555554 446677777777777


Q ss_pred             CCC-cCc---------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCC---HHHHHHHHHCC-CcccccccccC
Q 010920           77 INA-YRP---------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH---INVVRAIESHI-CYFCGWLREFY  142 (497)
Q Consensus        77 ~~~-~~~---------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~---~~~v~~Ll~~g-~~i~~~~~~~~  142 (497)
                      +|. .+.         +..|+.++|++|+++|++++.+|..|+||||+|+..|+   .++++.|++++ ++++  .+|..
T Consensus       123 vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~--~~d~~  200 (327)
T 1sw6_A          123 LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI--LEDSM  200 (327)
T ss_dssp             SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGG--EECTT
T ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcccc--CCCCC
Confidence            766 443         66677888888888888888899999999999999998   67888888876 6788  89999


Q ss_pred             CCCHHHHHhhh----cCCHHHHHHhhhC--------------------CCCCCCCCcccccccccCCcCcCHHHHHHHhh
Q 010920          143 GPSFLEALAPQ----LMSRKIWVVVIPC--------------------GTANPSKPLRFELVIYPSLQDVQPRAVIALWK  198 (497)
Q Consensus       143 G~T~Lh~~A~~----~~~~~iv~~Ll~~--------------------ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~  198 (497)
                      |.|||| +|+.    .++.+++++|++.                    |++.+..+..+.++++.+..   +..   +..
T Consensus       201 g~tpLh-~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~---~~~---Ll~  273 (327)
T 1sw6_A          201 NRTILH-HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD---LKW---IIA  273 (327)
T ss_dssp             CCCHHH-HHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS---HHH---HHH
T ss_pred             CCCHHH-HHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH---HHH---HHH
Confidence            999999 8887    8999999999877                    77777777778888888774   222   223


Q ss_pred             cCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCCC
Q 010920          199 AKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGD  233 (497)
Q Consensus       199 ~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~  233 (497)
                      ..++..+..|.||||+|+..++.+.+++|...+.+
T Consensus       274 ~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad  308 (327)
T 1sw6_A          274 NMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD  308 (327)
T ss_dssp             HTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred             hCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            47999999999999999999999999999877654

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=2.2e-23  Score=174.76  Aligned_cols=117  Identities=19%  Similarity=0.209  Sum_probs=100.1

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHH
Q 010920           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRL   93 (497)
Q Consensus        14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~   93 (497)
                      +..|.||||+|++.|+.+++++|++.|++++.+|..|.||||+|+..|+ .++++                        +
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~------------------------~   58 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQ-LEILE------------------------F   58 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTC-HHHHH------------------------H
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCC-HHHHH------------------------H
Confidence            4589999999999999999999999999999999999999999999844 55555                        4


Q ss_pred             HHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHH
Q 010920           94 LLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRK  158 (497)
Q Consensus        94 Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~  158 (497)
                      |+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|...+..+
T Consensus        59 Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~  120 (123)
T 3aaa_C           59 LLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKT--VKGPDGLTAFE-ATDNQAIKA  120 (123)
T ss_dssp             HHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HCCCHHHHH
T ss_pred             HHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HhCCHHHHH
Confidence            555566667789999999999999999999999999999999  89999999999 885443333

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.89  E-value=3.7e-23  Score=183.95  Aligned_cols=132  Identities=23%  Similarity=0.253  Sum_probs=118.7

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------   82 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------   82 (497)
                      .++..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. ++.+++++|+++|++++..+.         
T Consensus        31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  109 (172)
T 3v30_A           31 KPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG-GYTDIVGLLLERDVDINIYDWNGGTPLLYA  109 (172)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHC-CCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            4577999999999999999999999999999999999999999999998 459999999999999998765         


Q ss_pred             ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCH
Q 010920           83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSF  146 (497)
Q Consensus        83 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~  146 (497)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++++++.  ..+..|.||
T Consensus       110 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~--~~~~~~~~p  171 (172)
T 3v30_A          110 VRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLF--QSNLVPADP  171 (172)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHS--CC-------
T ss_pred             HHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHh--cccCCCCCC
Confidence            78899999999999999999999999999999999999999999999999988  788888776

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.89  E-value=2e-22  Score=177.24  Aligned_cols=150  Identities=15%  Similarity=0.118  Sum_probs=134.6

Q ss_pred             CCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc--------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCC
Q 010920           49 EGKTPLIVACMDSGLINVAKTLIELGANINAYRP--------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH  120 (497)
Q Consensus        49 ~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~--------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~  120 (497)
                      ...||||+|+..|+ .+++++|+++|++++..+.        +..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus         4 ~~~~~L~~A~~~g~-~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   82 (162)
T 1ihb_A            4 PWGNELASAAARGD-LEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   82 (162)
T ss_dssp             -CHHHHHHHHHHTC-HHHHHHHTTSCCCTTCCCTTSCCHHHHCCSSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             hHhhHHHHHHHcCC-HHHHHHHHhCCCCccccCccCccHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            45699999999955 9999999999999988765        33499999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcC
Q 010920          121 INVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAK  200 (497)
Q Consensus       121 ~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~  200 (497)
                      .+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++.                              
T Consensus        83 ~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~g~~~------------------------------  129 (162)
T 1ihb_A           83 LDTLQTLLEFQADVN--IEDNEGNLPLH-LAAKEGHLRVVEFLVKHTASN------------------------------  129 (162)
T ss_dssp             HHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHSCCC------------------------------
T ss_pred             HHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHcCCHHHHHHHHHccCCC------------------------------
Confidence            999999999999999  89999999999 999999999999999998653                              


Q ss_pred             CCCCCCCCCChHHHHHHhCChhHHHHHHhCCC
Q 010920          201 IDEPKFHQPDPSLTIYDQATKIRYKFASANEG  232 (497)
Q Consensus       201 ~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~  232 (497)
                      ++..+..|.|||++|+..++.+.+++|.+.+.
T Consensus       130 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A          130 VGHRNHKGDTACDLARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred             CCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence            23445679999999999999999999987654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.89  E-value=1.9e-23  Score=194.14  Aligned_cols=135  Identities=19%  Similarity=0.170  Sum_probs=110.8

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHH
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTV   91 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v   91 (497)
                      .++.+|.||||+|+..|+.++|++|++.|++++.+|..|.||||+|+..|+ .+++++|+                    
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll--------------------  126 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGH-KDIVEMLF--------------------  126 (222)
T ss_dssp             HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHT--------------------
T ss_pred             ccccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCC-HHHHHHHH--------------------
Confidence            356789999999999999999999999999999999999999999999844 55555555                    


Q ss_pred             HHHHhC-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCC
Q 010920           92 RLLLSC-GANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTAN  170 (497)
Q Consensus        92 ~~Ll~~-ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~  170 (497)
                          ++ |++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.++++.|+..|+..
T Consensus       127 ----~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          127 ----TQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTD--LRNIEKKLAFD-MATNAACASLLKKKQGTDAVR  199 (222)
T ss_dssp             ----TSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC--CCCTTSCCHHH-HCCSHHHHHHHC---------
T ss_pred             ----cCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--cccCCCCCHHH-HhcchhHHHHHHHHhccchhh
Confidence                44 56677789999999999999999999999999999999  89999999999 999999999999999999876


Q ss_pred             CCCC
Q 010920          171 PSKP  174 (497)
Q Consensus       171 ~~~~  174 (497)
                      ...+
T Consensus       200 ~~~~  203 (222)
T 3ehr_A          200 TLSN  203 (222)
T ss_dssp             ----
T ss_pred             hccc
Confidence            4433

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.89  E-value=3.9e-22  Score=177.01  Aligned_cols=149  Identities=19%  Similarity=0.160  Sum_probs=130.5

Q ss_pred             CCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHH
Q 010920           47 DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARI  117 (497)
Q Consensus        47 d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~  117 (497)
                      ...+.|+||+|+..|+ .+++++|+++|++++..+.         +..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus        11 ~~~~~~~l~~A~~~g~-~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   89 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGR-DDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL   89 (169)
T ss_dssp             --CHHHHHHHHHHHTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCcccchHHHHHHcCC-HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            3457799999999955 9999999999999988765         78899999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHh
Q 010920          118 KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW  197 (497)
Q Consensus       118 ~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~  197 (497)
                      .|+.+++++|+++|++++  ..|..|.|||| +|+..++.+++++|+++|++.                           
T Consensus        90 ~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~g~~~---------------------------  139 (169)
T 2y1l_E           90 FGHLEIVEVLLKNGADVN--ANDMEGHTPLH-LAAMFGHLEIVEVLLKNGADV---------------------------  139 (169)
T ss_dssp             TTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCT---------------------------
T ss_pred             cCCHHHHHHHHHcCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCC---------------------------
Confidence            999999999999999998  78999999999 899999999999999888654                           


Q ss_pred             hcCCCCCCCCCCChHHHHHHhCChhHHHHHHhC
Q 010920          198 KAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN  230 (497)
Q Consensus       198 ~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~  230 (497)
                          +..+..|.||+++|+..++...+++|.+.
T Consensus       140 ----~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  168 (169)
T 2y1l_E          140 ----NAQDKFGKTAFDISIDNGNEDLAEILQKL  168 (169)
T ss_dssp             ----TCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             ----CCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence                33445789999999999999999888653

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.89  E-value=3.4e-22  Score=176.84  Aligned_cols=146  Identities=16%  Similarity=0.067  Sum_probs=130.3

Q ss_pred             CCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcC
Q 010920           49 EGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG  119 (497)
Q Consensus        49 ~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g  119 (497)
                      .|.||||+|+..|+ .+++++|++.+++++..+.         +..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus         2 ~~~t~L~~A~~~g~-~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   80 (167)
T 3v31_A            2 ANSLSVHQLAAQGE-MLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG   80 (167)
T ss_dssp             TTCCCHHHHHHTTC-HHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCcchHHHHHHCCC-HHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence            58899999999955 9999999999999888765         7789999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhc
Q 010920          120 HINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKA  199 (497)
Q Consensus       120 ~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~  199 (497)
                      +.+++++|+++|++++  ..|..|.|||| +|+..++.+++++|+++|++..                            
T Consensus        81 ~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~g~~~~----------------------------  129 (167)
T 3v31_A           81 YTDIVKMLLDCGVDVN--EYDWNGGTPLL-YAVHGNHVKCVKMLLESGADPT----------------------------  129 (167)
T ss_dssp             CHHHHHHHHHHTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCTT----------------------------
T ss_pred             CHHHHHHHHHCCCCCC--cCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCC----------------------------
Confidence            9999999999999998  88999999999 8999999999999998886553                            


Q ss_pred             CCCCCCCCCCChHHHHHHhCChhHHHHHHh
Q 010920          200 KIDEPKFHQPDPSLTIYDQATKIRYKFASA  229 (497)
Q Consensus       200 ~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~  229 (497)
                         ..+..|.||+++|+..+....++++..
T Consensus       130 ---~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (167)
T 3v31_A          130 ---IETDSGYNSMDLAVALGYRSVQQVIES  156 (167)
T ss_dssp             ---CCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             ---CcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence               344578999999999999999988864

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.88  E-value=5.8e-24  Score=191.94  Aligned_cols=146  Identities=14%  Similarity=0.064  Sum_probs=99.1

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCccccC-CCCChHHHHHHHhCC---cHHHHHHHHHcCCCCCCcCc---------c
Q 010920           17 KDELLYQWVIAGDVDAIRALRSQGASLEWMD-KEGKTPLIVACMDSG---LINVAKTLIELGANINAYRP---------A   83 (497)
Q Consensus        17 G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d-~~G~TpLh~Aa~~g~---~~~~v~~Ll~~ga~~~~~~~---------~   83 (497)
                      +.++|+.|++.|+.+.++.++..+.  +.++ ..|+||||+|+.+|+   +.+++++||++|+++|.++.         +
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            3456666666666666666665543  2333 456666666666532   12355555555555555443         2


Q ss_pred             cCCC------HHHHHHHHhCCCCCcccCCCCC-CHHHHHHHcC-----CHHHHHHHHH-CCCcccccccccCCCCHHHHH
Q 010920           84 KRGL------EPTVRLLLSCGANALVRNDDCH-TALGVARIKG-----HINVVRAIES-HICYFCGWLREFYGPSFLEAL  150 (497)
Q Consensus        84 ~~g~------~~~v~~Ll~~ga~~~~~~~~g~-T~Lh~A~~~g-----~~~~v~~Ll~-~g~~i~~~~~~~~G~T~Lh~~  150 (497)
                      ..++      .+++++|+++|+++|.+|..|. ||||+|+..+     +.+++++|++ +|++++  .+|..|.|||| +
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~--~~d~~G~TpL~-~  160 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL--IKDKWGLTALE-F  160 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT--CCCTTSCCHHH-H
T ss_pred             HcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc--ccCCCCCCHHH-H
Confidence            2222      4677888888888888888888 8888888844     3568888888 888888  78888888888 8


Q ss_pred             hhhcCCHHHHHHhhhCC
Q 010920          151 APQLMSRKIWVVVIPCG  167 (497)
Q Consensus       151 A~~~~~~~iv~~Ll~~g  167 (497)
                      |+..++.+++++|....
T Consensus       161 A~~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          161 VKRCQKPIALKMMEDYI  177 (186)
T ss_dssp             HHTTTCHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHH
Confidence            88888888888887654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.88  E-value=7.2e-22  Score=172.18  Aligned_cols=143  Identities=17%  Similarity=0.127  Sum_probs=126.4

Q ss_pred             CChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc--------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCH
Q 010920           50 GKTPLIVACMDSGLINVAKTLIELGANINAYRP--------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI  121 (497)
Q Consensus        50 G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~--------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~  121 (497)
                      +.|+||+|+..|+ .+++++|+++|++++....        +..|+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus         2 ~~~~L~~A~~~g~-~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   80 (153)
T 1awc_B            2 LGKKLLEAARAGQ-DDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHHTC-HHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             ccHHHHHHHHcCC-HHHHHHHHHcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChH
Confidence            4589999999965 9999999999998764221        778999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCC
Q 010920          122 NVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKI  201 (497)
Q Consensus       122 ~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~  201 (497)
                      +++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++.+                              
T Consensus        81 ~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~------------------------------  127 (153)
T 1awc_B           81 NIVEVLLKHGADVN--AKDMLKMTALH-WATEHNHQEVVELLIKYGADVH------------------------------  127 (153)
T ss_dssp             HHHHHHHTTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCTT------------------------------
T ss_pred             HHHHHHHHcCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCcc------------------------------
Confidence            99999999999998  88999999999 8999999999999999886653                              


Q ss_pred             CCCCCCCCChHHHHHHhCChhHHHHH
Q 010920          202 DEPKFHQPDPSLTIYDQATKIRYKFA  227 (497)
Q Consensus       202 ~~~~~~g~~pl~~a~~~~~~~~~~~l  227 (497)
                       ..+..|.||+++|+..++.+.+++|
T Consensus       128 -~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          128 -TQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             -CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             -ccCCCCCCHHHHHHHcCCHHHHHHh
Confidence             3456788999999999999888876

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.87  E-value=2.1e-22  Score=181.26  Aligned_cols=113  Identities=21%  Similarity=0.169  Sum_probs=98.3

Q ss_pred             hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHH
Q 010920           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVR   92 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~   92 (497)
                      .+..|.||||+|++.|+.+++++|++ |+++|.+|..|.||||+|+..|+ .+++++|+++|                  
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~-~~~v~~Ll~~g------------------   99 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGS-DKCVRLLAEAG------------------   99 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTC-HHHHHHHHHTT------------------
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCC-HHHHHHHHHcC------------------
Confidence            35689999999999999999999999 99999999999999999999854 66666665555                  


Q ss_pred             HHHhCCCCCcccC-CCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhc
Q 010920           93 LLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL  154 (497)
Q Consensus        93 ~Ll~~ga~~~~~~-~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~  154 (497)
                            ++++.++ ..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..
T Consensus       100 ------a~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~  153 (183)
T 3deo_A          100 ------ADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE--VEDERGLTALE-LAREI  153 (183)
T ss_dssp             ------CCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTT--CCCTTSCCHHH-HHHHH
T ss_pred             ------CCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCc--CCCCCCCCHHH-HHHHh
Confidence                  5555566 789999999999999999999999999998  89999999999 77654

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.87  E-value=7e-24  Score=212.11  Aligned_cols=202  Identities=13%  Similarity=-0.024  Sum_probs=150.7

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHHcCCCc---cccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCC-----CCcCc---
Q 010920           14 RQSKDELLYQWVIAGDVDAIRALRSQGASL---EWMDKEGKTPLIVACMDSGLINVAKTLIELGANI-----NAYRP---   82 (497)
Q Consensus        14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~---n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~-----~~~~~---   82 (497)
                      +.++.||||+||+.|+.++|++|+++|+..   +..+..|.||||+||.. ++.++|++|+++|+++     +..+.   
T Consensus        89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~-G~~eiv~~Ll~~gad~~~~~i~~~~~TpL  167 (376)
T 2aja_A           89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN-GHLHVLNRLCELAPTEIMAMIQAENYHAF  167 (376)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT-TCHHHHHHHHHSCTTTHHHHHSHHHHHHH
T ss_pred             CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHc-CCHHHHHHHHhCCCCccccccCCCCCCHH
Confidence            447789999999999999999999999832   23455788999999998 5699999999999763     22222   


Q ss_pred             ---ccCCCHHHHHHHHhCCCCCcc--cCCCCCCHHHHHH-HcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCC
Q 010920           83 ---AKRGLEPTVRLLLSCGANALV--RNDDCHTALGVAR-IKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS  156 (497)
Q Consensus        83 ---~~~g~~~~v~~Ll~~ga~~~~--~~~~g~T~Lh~A~-~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~  156 (497)
                         +..|+.++|++|+++|++++.  .|..|.||||+|+ ..|+.++|++|+++|+         .|.|||| .|+..|+
T Consensus       168 h~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga---------~~~taL~-~Aa~~g~  237 (376)
T 2aja_A          168 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV---------MLAYAEI-HEFEYGE  237 (376)
T ss_dssp             HHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH---------HHHHHHH-CTTTTTT
T ss_pred             HHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC---------ccchHHH-HHHHCCC
Confidence               889999999999999999887  8889999999999 9999999999998663         2779999 9999999


Q ss_pred             HHHHHHhhhCCCCCCCCCcccccccccCCcCcC---------------------------HHHHHHHhh-------cCCC
Q 010920          157 RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQ---------------------------PRAVIALWK-------AKID  202 (497)
Q Consensus       157 ~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~---------------------------~~~~~~l~~-------~~~~  202 (497)
                      .+++++|+++|++....+.    ++..+...++                           ...+..+..       ....
T Consensus       238 ~evv~lL~~~ga~~~~~~~----~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g  313 (376)
T 2aja_A          238 KYVNPFIARHVNRLKEMHD----AFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTA  313 (376)
T ss_dssp             TTHHHHHHHHHHHHHHHHT----TTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCC
T ss_pred             HHHHHHHHhcCcccccccH----HHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccC
Confidence            9999999999876432211    1111111111                           111111110       0112


Q ss_pred             CCCCCCCChHHHHHHhCChhHHHHHHhC
Q 010920          203 EPKFHQPDPSLTIYDQATKIRYKFASAN  230 (497)
Q Consensus       203 ~~~~~g~~pl~~a~~~~~~~~~~~l~~~  230 (497)
                      .....+.+||++|+..++.+.+++|...
T Consensus       314 ~~~n~~~~~L~~A~~~g~~e~v~lLl~~  341 (376)
T 2aja_A          314 TIPGDANELLRLALRLGNQGACALLLSI  341 (376)
T ss_dssp             SSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             CCCCCccHHHHHHHHcCcHHHHHHHHcC
Confidence            2234456789999999999999999864

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.87  E-value=3.9e-21  Score=167.86  Aligned_cols=144  Identities=13%  Similarity=0.060  Sum_probs=128.2

Q ss_pred             CChHHHHHHHhCCcHHHHHHHHHc-CCCCCCcCc--------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCC
Q 010920           50 GKTPLIVACMDSGLINVAKTLIEL-GANINAYRP--------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH  120 (497)
Q Consensus        50 G~TpLh~Aa~~g~~~~~v~~Ll~~-ga~~~~~~~--------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~  120 (497)
                      |.||||+|+..|+ .+++++|++. +.+++..+.        +..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~-~~~v~~ll~~~~~~~~~~~~~g~t~L~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGD-VQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTC-HHHHHHHHHTTCCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCC-HHHHHHHHHhhCcCccccCCCCCcHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            5699999999965 9999999998 347777655        78899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcC
Q 010920          121 INVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAK  200 (497)
Q Consensus       121 ~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~  200 (497)
                      .+++++|+++|++++  .+|..|.|||| +|+..|+.+++++|+++ ++.                              
T Consensus        81 ~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~-~~~------------------------------  126 (156)
T 1bd8_A           81 LDTLKVLVEHGADVN--VPDGTGALPIH-LAVQEGHTAVVSFLAAE-SDL------------------------------  126 (156)
T ss_dssp             HHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHHTCHHHHHHHHTT-SCT------------------------------
T ss_pred             HHHHHHHHHcCCCCC--CcCCCCCcHHH-HHHHhChHHHHHHHHhc-cCC------------------------------
Confidence            999999999999999  89999999999 99999999999999977 443                              


Q ss_pred             CCCCCCCCCChHHHHHHhCChhHHHHHHh
Q 010920          201 IDEPKFHQPDPSLTIYDQATKIRYKFASA  229 (497)
Q Consensus       201 ~~~~~~~g~~pl~~a~~~~~~~~~~~l~~  229 (497)
                       +..+..|.|||++|+..++.+.+++|.+
T Consensus       127 -~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A          127 -HRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             -TCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             -CCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence             2345678999999999999999988864

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.87  E-value=2.2e-22  Score=189.94  Aligned_cols=128  Identities=20%  Similarity=0.149  Sum_probs=102.4

Q ss_pred             hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHH
Q 010920           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVR   92 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~   92 (497)
                      .+..|.||||+|++.|+.++|++|++ |+++|.+|..|.||||+|+..|+ .++|++|+++|++++              
T Consensus        41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~-~~~v~~Ll~~ga~~~--------------  104 (244)
T 3ui2_A           41 VVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGS-DKCVRLLAEAGADLD--------------  104 (244)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTC-HHHHHHHHHTTCCTT--------------
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCC-HHHHHHHHHcCCCCC--------------
Confidence            35689999999999999999999999 99999999999999999999844 677766666665554              


Q ss_pred             HHHhCCCCCcccC-CCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhh----------------hcC
Q 010920           93 LLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAP----------------QLM  155 (497)
Q Consensus        93 ~Ll~~ga~~~~~~-~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~----------------~~~  155 (497)
                                .++ ..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+                ..|
T Consensus       105 ----------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--~~d~~g~t~l~-~A~~~~~~~~~~~~l~~a~~~g  171 (244)
T 3ui2_A          105 ----------HRDMRGGLTALHMAAGYVRPEVVEALVELGADIE--VEDERGLTALE-LAREILKTTPKGNPMQFGRRIG  171 (244)
T ss_dssp             ----------CCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHHHTTCCCSSHHHHHHHHH
T ss_pred             ----------cCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCcHHH-HHHHHHhccCCCCHHHHHHHcC
Confidence                      445 567777777777777777777777777777  67777777777 555                667


Q ss_pred             CHHHHHHhhhCCCC
Q 010920          156 SRKIWVVVIPCGTA  169 (497)
Q Consensus       156 ~~~iv~~Ll~~ga~  169 (497)
                      +.+++++|+.++.+
T Consensus       172 ~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          172 LEKVINVLEGQVFE  185 (244)
T ss_dssp             HHHHHHHHHHHHEE
T ss_pred             hHHHHHHHHHhccc
Confidence            88888888876543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.86  E-value=7.8e-22  Score=191.91  Aligned_cols=134  Identities=13%  Similarity=0.123  Sum_probs=117.1

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCccc------cCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHH
Q 010920           16 SKDELLYQWVIAGDVDAIRALRSQGASLEW------MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEP   89 (497)
Q Consensus        16 ~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~------~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~   89 (497)
                      .+.++||.|++.|+.+.|+.|++.|++++.      .+..|.||||+|+..++                      .++.+
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~----------------------~~~~~  207 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVAN----------------------QASLP  207 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCC----------------------TTTHH
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcc----------------------cCcHH
Confidence            356789999999999999999999999998      68899999999999732                      23456


Q ss_pred             HHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCC
Q 010920           90 TVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA  169 (497)
Q Consensus        90 ~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~  169 (497)
                      ++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++
T Consensus       208 iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~--~~d~~G~TpL~-~A~~~~~~~iv~~Ll~~ga~  284 (301)
T 2b0o_E          208 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG--TVNEAGETALD-IARKKHHKECEELLEQAQAG  284 (301)
T ss_dssp             HHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCS--CCCTTSCCHHH-HHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHcCCHHHHHHHHHhcCC
Confidence            6666666667777889999999999999999999999999999999  89999999999 99999999999999999987


Q ss_pred             CCCCC
Q 010920          170 NPSKP  174 (497)
Q Consensus       170 ~~~~~  174 (497)
                      .+.++
T Consensus       285 ~g~tp  289 (301)
T 2b0o_E          285 TFAFP  289 (301)
T ss_dssp             TTSSC
T ss_pred             CCCCh
Confidence            54333

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.86  E-value=1.2e-21  Score=167.29  Aligned_cols=132  Identities=13%  Similarity=0.033  Sum_probs=113.8

Q ss_pred             CCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcC
Q 010920           40 GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG  119 (497)
Q Consensus        40 ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g  119 (497)
                      +++++.+|..|.||||+|+..|+ .+++++|+                        ++|++++.+|..|.||||+|+. |
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll------------------------~~g~~~~~~~~~g~t~L~~A~~-~   55 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQ-VETVRQLL------------------------EAGADPNALNRFGRRPIQVMMM-G   55 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTC-HHHHHHHH------------------------HTTCCTTCCCTTCCTTTTTSTT-S
T ss_pred             CCCccCCCCCCccHHHHHHHcCC-HHHHHHHH------------------------HcCCCcCCcCCCCCCHHHHHHc-C
Confidence            47899999999999999999854 55555555                        5555666788999999999999 9


Q ss_pred             CHHHHHHHHHCCCcccccccccC-CCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhh
Q 010920          120 HINVVRAIESHICYFCGWLREFY-GPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWK  198 (497)
Q Consensus       120 ~~~~v~~Ll~~g~~i~~~~~~~~-G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~  198 (497)
                      +.+++++|+++|++++  .+|.. |.|||| +|+..++.+++++|+++|++.+                           
T Consensus        56 ~~~~v~~Ll~~g~~~~--~~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~---------------------------  105 (136)
T 1d9s_A           56 SAQVAELLLLHGAEPN--CADPATLTRPVH-DAAREGFLDTLVVLHRAGARLD---------------------------  105 (136)
T ss_dssp             CHHHHHHHHHHTCCSS--CCBTTTTBCHHH-HHHHHTCHHHHHHHHHTCCCCC---------------------------
T ss_pred             CHHHHHHHHHCCCCCC--CcCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCC---------------------------
Confidence            9999999999999999  89999 999999 9999999999999999986653                           


Q ss_pred             cCCCCCCCCCCChHHHHHHhCChhHHHHHHhCC
Q 010920          199 AKIDEPKFHQPDPSLTIYDQATKIRYKFASANE  231 (497)
Q Consensus       199 ~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~  231 (497)
                          ..+..|.|||++|+..++.+.+++|...+
T Consensus       106 ----~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G  134 (136)
T 1d9s_A          106 ----VCDAWGRLPVDLAEEQGHRDIARYLHAAT  134 (136)
T ss_dssp             ----CCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             ----ccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence                34567899999999999999999887654

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.86  E-value=6.6e-21  Score=170.63  Aligned_cols=154  Identities=14%  Similarity=0.086  Sum_probs=126.8

Q ss_pred             CCCChHHHHHHHhCCcHHHHHHHHHc-CCCCCCcCc---------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHH
Q 010920           48 KEGKTPLIVACMDSGLINVAKTLIEL-GANINAYRP---------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARI  117 (497)
Q Consensus        48 ~~G~TpLh~Aa~~g~~~~~v~~Ll~~-ga~~~~~~~---------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~  117 (497)
                      ..+.++||.|+..|+ .+++++|++. +.+++..+.         +..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus         3 ~~~~~~l~~A~~~g~-~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   81 (179)
T 3f6q_A            3 PEFMDDIFTQCREGN-AVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAAS   81 (179)
T ss_dssp             ----CCHHHHHHHTC-HHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCC-HHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            467899999999965 9999999998 666777665         88899999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHH--HH
Q 010920          118 KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAV--IA  195 (497)
Q Consensus       118 ~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~--~~  195 (497)
                      .|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++.+..+..+.++++.+........+  +.
T Consensus        82 ~~~~~~v~~Ll~~g~~~~--~~d~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~  158 (179)
T 3f6q_A           82 HGHRDIVQKLLQYKADIN--AVNEHGNVPLH-YACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE  158 (179)
T ss_dssp             TTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCC--ccCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999  89999999999 99999999999999999988877776677777777654443332  22


Q ss_pred             HhhcCCCCCC
Q 010920          196 LWKAKIDEPK  205 (497)
Q Consensus       196 l~~~~~~~~~  205 (497)
                      ..+++++...
T Consensus       159 ~~g~~~~~~~  168 (179)
T 3f6q_A          159 KMGQNLNRIP  168 (179)
T ss_dssp             HTTCCCSCBC
T ss_pred             HhhcCcccCC
Confidence            3555555443

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.85  E-value=4.6e-21  Score=152.20  Aligned_cols=93  Identities=27%  Similarity=0.420  Sum_probs=77.0

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHH
Q 010920           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLL   95 (497)
Q Consensus        16 ~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll   95 (497)
                      +|.||||+|++.|+.+++++|++.|+++|.+|..|.||||+|+..|+ .+++++|+                        
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~-~~~v~~Ll------------------------   55 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH-LEVVKLLL------------------------   55 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHH------------------------
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCC-HHHHHHHH------------------------
Confidence            48899999999999999999999999999999999999999999744 55544444                        


Q ss_pred             hCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCc
Q 010920           96 SCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY  133 (497)
Q Consensus        96 ~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~  133 (497)
                      ++|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus        56 ~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           56 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            55566667788899999999999999999999998874

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.85  E-value=4.9e-22  Score=186.84  Aligned_cols=153  Identities=15%  Similarity=0.054  Sum_probs=99.1

Q ss_pred             CCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc--------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcC
Q 010920           48 KEGKTPLIVACMDSGLINVAKTLIELGANINAYRP--------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG  119 (497)
Q Consensus        48 ~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~--------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g  119 (497)
                      ..|.||||.|+.. +..++++.|+++|++++....        +..|+.+++++|++.|++++.+|..|.||||+|+..|
T Consensus         3 ~~g~t~L~~a~~~-~~~~~~~~ll~~g~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g   81 (239)
T 1ycs_B            3 ITGQVSLPPGKRT-NLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG   81 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred             ccccccCchhhhh-hhHHHHHHHhccCCCcccCchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            4699999999998 559999999999999987643        7899999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccc-cccccC--CcCc--CHHHHH
Q 010920          120 HINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFE-LVIYPS--LQDV--QPRAVI  194 (497)
Q Consensus       120 ~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~-~~l~~~--~~~~--~~~~~~  194 (497)
                      +.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++.+..+..+. ++++.+  ...+  ....++
T Consensus        82 ~~~~v~~Ll~~ga~~~--~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~L  158 (239)
T 1ycs_B           82 HTEIVKFLVQFGVNVN--AADSDGWTPLH-CAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL  158 (239)
T ss_dssp             CHHHHHHHHHHTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHH
T ss_pred             CHHHHHHHHHcCCCCC--ccCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHH
Confidence            9999999999999999  89999999999 99999999999999999999876665444 666665  3332  233333


Q ss_pred             HHhhcCCCCC
Q 010920          195 ALWKAKIDEP  204 (497)
Q Consensus       195 ~l~~~~~~~~  204 (497)
                      ...+++++..
T Consensus       159 l~~~a~~~~~  168 (239)
T 1ycs_B          159 YGVQEKMGIM  168 (239)
T ss_dssp             HHHHHHTTTT
T ss_pred             HHhhhccccc
Confidence            3345544443

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.85  E-value=1.1e-21  Score=177.02  Aligned_cols=121  Identities=22%  Similarity=0.267  Sum_probs=108.1

Q ss_pred             CCCchHHHHHHHcCCH----HHHHHHHHcCCCccccCCCCChHHHHHHHhCCc-----HHHHHHHHHcCCCCCCcCc---
Q 010920           15 QSKDELLYQWVIAGDV----DAIRALRSQGASLEWMDKEGKTPLIVACMDSGL-----INVAKTLIELGANINAYRP---   82 (497)
Q Consensus        15 ~~G~T~Lh~Aa~~g~~----~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~-----~~~v~~Ll~~ga~~~~~~~---   82 (497)
                      ..|.||||+|+..|+.    +++++||++|+++|.+|..|+||||+|+..|..     .+++++|+++|+++|.++.   
T Consensus        36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~  115 (186)
T 3t8k_A           36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYK  115 (186)
T ss_dssp             HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGT
T ss_pred             cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcC
Confidence            6799999999999985    599999999999999999999999999998542     6899999999999999875   


Q ss_pred             -------ccC-----CCHHHHHHHHh-CCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCccc
Q 010920           83 -------AKR-----GLEPTVRLLLS-CGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC  135 (497)
Q Consensus        83 -------~~~-----g~~~~v~~Ll~-~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~  135 (497)
                             +..     ++.+++++|++ +|++++.+|..|.||||+|+..|+.++|++|.++..+.+
T Consensus       116 ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~  181 (186)
T 3t8k_A          116 IVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN  181 (186)
T ss_dssp             BCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence                   332     23568999999 999999999999999999999999999999998876655

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.85  E-value=1e-20  Score=166.94  Aligned_cols=137  Identities=17%  Similarity=0.135  Sum_probs=116.8

Q ss_pred             cCCCCChHHHHHHHhCCcHHHHHHHHHc-CCCCCCcCc---------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHH
Q 010920           46 MDKEGKTPLIVACMDSGLINVAKTLIEL-GANINAYRP---------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVA  115 (497)
Q Consensus        46 ~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~-ga~~~~~~~---------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A  115 (497)
                      .|..|.||||+|+..|+ .++++.|++. +.+++..+.         +..|+.+++++|+++|++++.+|..|.||||+|
T Consensus         4 ~~~~~~~~l~~A~~~g~-~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   82 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGD-VETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNA   82 (165)
T ss_dssp             --CHHHHHHHHHHHHTC-HHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CcchhhHHHHHHHHhCC-HHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHH
Confidence            46678999999999965 9999999985 445555443         788999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCc
Q 010920          116 RIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQ  186 (497)
Q Consensus       116 ~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~  186 (497)
                      +..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++.+..+..+.++++.+..
T Consensus        83 ~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~  150 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGAVVN--VADLWKFTPLH-EAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD  150 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT
T ss_pred             HHcCcHHHHHHHHhCCCCCC--CcCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc
Confidence            99999999999999999998  89999999999 9999999999999999998876666555555555443

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.85  E-value=8.7e-21  Score=182.40  Aligned_cols=129  Identities=16%  Similarity=0.099  Sum_probs=113.0

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCc------cccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHH
Q 010920           17 KDELLYQWVIAGDVDAIRALRSQGASL------EWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPT   90 (497)
Q Consensus        17 G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~------n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~   90 (497)
                      ..++|+.|++.|+.+.++.|++.|+++      +..|..|.||||+|+..|+                      .|+.++
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~----------------------~~~~~~  187 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVD----------------------RTSLHI  187 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCC----------------------TTTHHH
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcc----------------------cchHHH
Confidence            357999999999999999999999984      4458899999999999841                      133555


Q ss_pred             HHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCC
Q 010920           91 VRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTAN  170 (497)
Q Consensus        91 v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~  170 (497)
                      +++|+++|+++|.+|..|.||||+|+..|+.++|++|+++|++++  .+|..|.|||| +|+..|+.+++++|+++|++.
T Consensus       188 v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~--~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          188 VDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE--IANESGETPLD-IAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CccCCCCCHHH-HHHHcCCHHHHHHHHHcCCCC
Confidence            556666667777789999999999999999999999999999999  89999999999 999999999999999999864

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.84  E-value=8.6e-21  Score=189.03  Aligned_cols=128  Identities=19%  Similarity=0.225  Sum_probs=113.2

Q ss_pred             cCCCchHHHHHHHc-CCHHHHHHHHHcCCCccccC--CCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHH
Q 010920           14 RQSKDELLYQWVIA-GDVDAIRALRSQGASLEWMD--KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPT   90 (497)
Q Consensus        14 ~~~G~T~Lh~Aa~~-g~~~~v~~Ll~~ga~~n~~d--~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~   90 (497)
                      +..+.|+||+|+.. |+.++|++||++|+++|..+  ..|.||||+|+..|+ .+++++|+                   
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~-~~iv~~LL-------------------  255 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANS-LLACEFLL-------------------  255 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTC-HHHHHHHH-------------------
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCC-HHHHHHHH-------------------
Confidence            44677899999999 99999999999999999998  899999999999844 55555555                   


Q ss_pred             HHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCC
Q 010920           91 VRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA  169 (497)
Q Consensus        91 v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~  169 (497)
                           ++|++++.+|..|.||||+|+..|+.+++++|+++|++++  ..|..|.|||| +|+..++.+++++|+..+..
T Consensus       256 -----~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~--~~d~~G~TpL~-~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          256 -----QNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG--ARDSEGRDPLT-IAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             -----HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHC-
T ss_pred             -----HcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCC--CcCCCCCCHHH-HHHHCCCHHHHHHHHHcCCC
Confidence                 5556666788999999999999999999999999999999  89999999999 99999999999999987744

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.83  E-value=4.9e-21  Score=158.34  Aligned_cols=109  Identities=24%  Similarity=0.339  Sum_probs=94.2

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHH
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTV   91 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v   91 (497)
                      .+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+ .++++                       
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~-~~~~~-----------------------   59 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGH-AEIVK-----------------------   59 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTC-HHHHH-----------------------
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCc-HHHHH-----------------------
Confidence            358899999999999999999999999999999999999999999999744 55555                       


Q ss_pred             HHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHH
Q 010920           92 RLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFL  147 (497)
Q Consensus        92 ~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~L  147 (497)
                       +|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .++..|.||-
T Consensus        60 -~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n--~~~~~~~~~~  112 (115)
T 2l6b_A           60 -LLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN--ARSWGSSHHH  112 (115)
T ss_dssp             -HHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHH--HHSCCCC---
T ss_pred             -HHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC--cCCccccccc
Confidence             4555566667788999999999999999999999999999999  7888888873

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.83  E-value=4.2e-20  Score=157.75  Aligned_cols=119  Identities=18%  Similarity=0.195  Sum_probs=99.6

Q ss_pred             CCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcC
Q 010920           40 GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG  119 (497)
Q Consensus        40 ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g  119 (497)
                      |+|+ .+|..|.||||+|+..|+ .+++++|+                        ++|++++.+|..|.||||+|+..|
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~-~~~~~~Ll------------------------~~g~~~~~~~~~g~t~L~~A~~~~   54 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGD-IPSVEYLL------------------------QNGSDPNVKDHAGWTPLHEACNHG   54 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTC-HHHHHHHH------------------------HTTCCSCCCCTTSCCHHHHHHHTT
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCC-HHHHHHHH------------------------HcCCCCCcCCCCCCCHHHHHHHcC
Confidence            6677 789999999999999854 55555555                        455566678899999999999999


Q ss_pred             CHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcC
Q 010920          120 HINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQD  187 (497)
Q Consensus       120 ~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~  187 (497)
                      +.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++.+..+..+.++++.+...
T Consensus        55 ~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~  119 (137)
T 3c5r_A           55 HLKVVELLLQHKALVN--TTGYQNDSPLH-DAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE  119 (137)
T ss_dssp             CHHHHHHHHHTTCCTT--CCCGGGCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCH
T ss_pred             CHHHHHHHHHcCCccc--CcCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhc
Confidence            9999999999999999  89999999999 99999999999999999988877776667777766643

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.82  E-value=2.7e-20  Score=173.72  Aligned_cols=153  Identities=11%  Similarity=-0.012  Sum_probs=114.5

Q ss_pred             HHHHHHcCCCccccC---CCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCC
Q 010920           33 IRALRSQGASLEWMD---KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCH  109 (497)
Q Consensus        33 v~~Ll~~ga~~n~~d---~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~  109 (497)
                      |+.||++|++++..+   .+|.||||+|+..|+ .+++++|++.|                        ++++.+|..|.
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~-~~~v~~Ll~~g------------------------~~~~~~d~~g~   55 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGE-LEVVQQAVKEM------------------------NDPSQPNEEGI   55 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTC-HHHHHHHHHHS------------------------SCTTCCCTTSC
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCC-HHHHHHHHhcC------------------------CCCCCCCCCCC
Confidence            578899998876654   456788999999955 66666666554                        55566788999


Q ss_pred             CHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCC-cccccccccC--Cc
Q 010920          110 TALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKP-LRFELVIYPS--LQ  186 (497)
Q Consensus       110 T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~-~~~~~~l~~~--~~  186 (497)
                      ||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..|+.+++++|+++|++.+..+ ..+.++++.+  ..
T Consensus        56 tpLh~A~~~g~~~~v~~Ll~~ga~~n--~~d~~g~tpLh-~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~  132 (229)
T 2vge_A           56 TALHNAICGANYSIVDFLITAGANVN--SPDSHGWTPLH-CAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYR  132 (229)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTS
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHh
Confidence            99999999999999999999999999  89999999999 9999999999999999999987764 4677888777  55


Q ss_pred             CcCHHHHHH--HhhcCCCCCCCCCCChHH
Q 010920          187 DVQPRAVIA--LWKAKIDEPKFHQPDPSL  213 (497)
Q Consensus       187 ~~~~~~~~~--l~~~~~~~~~~~g~~pl~  213 (497)
                      .+....+..  ..+++++..+..|.+|++
T Consensus       133 ~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~  161 (229)
T 2vge_A          133 EGYADCATYLADVEQSMGLMNSGAVYALW  161 (229)
T ss_dssp             TTHHHHHHHHHHHHHHTTTSGGGEEEESS
T ss_pred             cChHHHHHHHHHcCCCcccccCCchHHHH
Confidence            555444333  366677777766666555

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.82  E-value=1.4e-19  Score=154.34  Aligned_cols=126  Identities=14%  Similarity=0.075  Sum_probs=106.2

Q ss_pred             cCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHH
Q 010920           46 MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR  125 (497)
Q Consensus        46 ~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~  125 (497)
                      ....|.||||+|+..|+ .+++++|+                        ++|++++.+|..|.||||+|+..|+.++++
T Consensus        10 ~~~~~~t~l~~A~~~g~-~~~v~~Ll------------------------~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~   64 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQ-DDEVRILM------------------------ANGADVNAKDEYGLTPLYLATAHGHLEIVE   64 (136)
T ss_dssp             --CHHHHHHHHHHHHTC-HHHHHHHH------------------------HTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             ccccccHHHHHHHHhCC-HHHHHHHH------------------------HcCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            34568899999999955 55555555                        555566678899999999999999999999


Q ss_pred             HHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCCCCCC
Q 010920          126 AIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPK  205 (497)
Q Consensus       126 ~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~  205 (497)
                      +|+++|++++  ..|..|.|||| +|+..++.+++++|+++|++.+                               ..+
T Consensus        65 ~Ll~~g~~~~--~~d~~g~t~L~-~A~~~~~~~~v~~Ll~~g~~~~-------------------------------~~~  110 (136)
T 2jab_A           65 VLLKNGADVN--AVDAIGFTPLH-LAAFIGHLEIAEVLLKHGADVN-------------------------------AQD  110 (136)
T ss_dssp             HHHHTTCCTT--CCCTTCCCHHH-HHHHHTCHHHHHHHHHTTCCTT-------------------------------CCC
T ss_pred             HHHHcCCCCC--cCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCc-------------------------------CcC
Confidence            9999999999  89999999999 9999999999999999886553                               334


Q ss_pred             CCCCChHHHHHHhCChhHHHHHHhC
Q 010920          206 FHQPDPSLTIYDQATKIRYKFASAN  230 (497)
Q Consensus       206 ~~g~~pl~~a~~~~~~~~~~~l~~~  230 (497)
                      ..|.|||++|+..++.+.+++|.+.
T Consensus       111 ~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A          111 KFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            6789999999999999999888653

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.82  E-value=9.5e-20  Score=144.54  Aligned_cols=93  Identities=24%  Similarity=0.354  Sum_probs=80.9

Q ss_pred             CCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHH
Q 010920           49 EGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE  128 (497)
Q Consensus        49 ~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll  128 (497)
                      +|+||||+|+..|+ .+++++|+                        ++|++++.+|..|.||||+|+..|+.+++++|+
T Consensus         1 ~g~t~L~~A~~~~~-~~~v~~Ll------------------------~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll   55 (93)
T 1n0q_A            1 NGRTPLHLAARNGH-LEVVKLLL------------------------EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL   55 (93)
T ss_dssp             --CCHHHHHHHHTC-HHHHHHHH------------------------HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHcCC-HHHHHHHH------------------------HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            48999999999854 55555555                        555666678899999999999999999999999


Q ss_pred             HCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCC
Q 010920          129 SHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA  169 (497)
Q Consensus       129 ~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~  169 (497)
                      ++|++++  .+|..|.|||| +|+..++.+++++|+++|++
T Consensus        56 ~~ga~~~--~~d~~g~t~l~-~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           56 EAGADVN--AKDKNGRTPLH-LAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCC
T ss_pred             HcCCCCC--ccCCCCCCHHH-HHHHcCCHHHHHHHHHcCCC
Confidence            9999999  89999999999 99999999999999999975

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.81  E-value=4.7e-19  Score=148.19  Aligned_cols=125  Identities=20%  Similarity=0.237  Sum_probs=107.1

Q ss_pred             CCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHH
Q 010920           49 EGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE  128 (497)
Q Consensus        49 ~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll  128 (497)
                      +|.||||+|+..|+ .+++++|+++|                        ++++..+..|.||||+|+..|+.+++++|+
T Consensus         1 ~g~t~L~~A~~~~~-~~~v~~Ll~~~------------------------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll   55 (126)
T 1n0r_A            1 NGRTPLHLAARNGH-LEVVKLLLEAG------------------------ADVNAKDKNGRTPLHLAARNGHLEVVKLLL   55 (126)
T ss_dssp             CCCCHHHHHHHHTC-HHHHHHHHHHT------------------------CCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCccHHHHHHHcCc-HHHHHHHHHcC------------------------CCCCCcCCCCCcHHHHHHHcCcHHHHHHHH
Confidence            58999999999955 66666666554                        455567889999999999999999999999


Q ss_pred             HCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCCCCCCCCC
Q 010920          129 SHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQ  208 (497)
Q Consensus       129 ~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g  208 (497)
                      ++|++++  .+|..|.|||| +|+..++.+++++|+++|++.+                               ..+..|
T Consensus        56 ~~g~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~Ll~~g~~~~-------------------------------~~~~~g  101 (126)
T 1n0r_A           56 EAGADVN--AKDKNGRTPLH-LAARNGHLEVVKLLLEAGADVN-------------------------------AKDKNG  101 (126)
T ss_dssp             HTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCTT-------------------------------CCCTTS
T ss_pred             HcCCCCc--ccCCCCCcHHH-HHHHcChHHHHHHHHHcCCCCc-------------------------------ccCCCC
Confidence            9999998  89999999999 9999999999999999886653                               344568


Q ss_pred             CChHHHHHHhCChhHHHHHHhCCC
Q 010920          209 PDPSLTIYDQATKIRYKFASANEG  232 (497)
Q Consensus       209 ~~pl~~a~~~~~~~~~~~l~~~~~  232 (497)
                      .||+++|+..+....+++|...+.
T Consensus       102 ~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A          102 RTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcCC
Confidence            899999999999999998876554

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.80  E-value=3.7e-20  Score=161.93  Aligned_cols=134  Identities=13%  Similarity=0.014  Sum_probs=103.8

Q ss_pred             ccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHH
Q 010920           43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN  122 (497)
Q Consensus        43 ~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~  122 (497)
                      .+..+..|.||||+|+..|+ .+++++|+                        ++|++++.++..|.||||+|+ .|+.+
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~-~~~v~~Ll------------------------~~g~~~~~~~~~g~t~L~~A~-~~~~~   58 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGR-VEEVRALL------------------------EAGANPNAPNSYGRRPIQVMM-MGSAR   58 (156)
T ss_dssp             -----CCSTTHHHHHHHHTC-HHHHHHHH------------------------TTTCCTTCCCSSSCCTTTSSC-TTCHH
T ss_pred             ccCCCccchHHHHHHHHcCC-HHHHHHHH------------------------HcCCCCCCCCCCCCCHHHHHH-cCCHH
Confidence            34567789999999999955 55555555                        555666678899999999995 99999


Q ss_pred             HHHHHHHCCCcccccccccCCCC-HHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCC
Q 010920          123 VVRAIESHICYFCGWLREFYGPS-FLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKI  201 (497)
Q Consensus       123 ~v~~Ll~~g~~i~~~~~~~~G~T-~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~  201 (497)
                      ++++|+++|++++  .+|..|.| ||| +|+..++.+++++|+++|++.+..                            
T Consensus        59 ~v~~Ll~~g~~~~--~~d~~g~ttpL~-~A~~~~~~~~v~~Ll~~ga~~~~~----------------------------  107 (156)
T 1bi7_B           59 VAELLLLHGAEPN--CADPATLTRPVH-DAAREGFLDTLVVLHRAGARLDVR----------------------------  107 (156)
T ss_dssp             HHHHHHTTTCCCC--CCCTTTCCCHHH-HHHHHTCHHHHHHHHHHTCCSSCC----------------------------
T ss_pred             HHHHHHHcCCCCC--CcCCCCCcHHHH-HHHHCCCHHHHHHHHHcCCCCccc----------------------------
Confidence            9999999999999  89999999 999 999999999999999998766433                            


Q ss_pred             CCCCCCCCChHHHHHHhCChhHHHHHHhCCCCHHH
Q 010920          202 DEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQ  236 (497)
Q Consensus       202 ~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~~~~  236 (497)
                         +..|.|||++|+..++.+.+++|...+.+...
T Consensus       108 ---d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~  139 (156)
T 1bi7_B          108 ---DAWGRLPVDLAEELGHRDVARYLRAAAGGTRG  139 (156)
T ss_dssp             ---CTTCCCHHHHHHHHTCHHHHHHHSSCC-----
T ss_pred             ---CCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCc
Confidence               45677788888888888888877766655433

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.80  E-value=3.4e-21  Score=173.33  Aligned_cols=139  Identities=13%  Similarity=0.034  Sum_probs=115.4

Q ss_pred             CCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHH
Q 010920           47 DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRA  126 (497)
Q Consensus        47 d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~  126 (497)
                      +..|.||||+|+..|+ .+++++|+                        + |++++.+|..|.||||+|+..|+.+++++
T Consensus        41 ~~~g~t~L~~A~~~g~-~~~v~~Ll------------------------~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~   94 (183)
T 3deo_A           41 VSEYETPWWTAARKAD-EQALSQLL------------------------E-DRDVDAVDENGRTALLFVAGLGSDKCVRL   94 (183)
T ss_dssp             HHHHHHHHHHHHHTTC-HHHHHHHT------------------------T-TSCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCC-HHHHHHHH------------------------h-cCCCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            4578999999999854 55555555                        4 56667788999999999999999999999


Q ss_pred             HHHCCCcccccccc-cCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCCCCCC
Q 010920          127 IESHICYFCGWLRE-FYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPK  205 (497)
Q Consensus       127 Ll~~g~~i~~~~~~-~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~  205 (497)
                      |+++|++++  .++ ..|.|||| +|+..++.+++++|+++|++.+..+..+.++++.+.+..+         .      
T Consensus        95 Ll~~ga~~~--~~~~~~g~tpL~-~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~---------~------  156 (183)
T 3deo_A           95 LAEAGADLD--HRDMRGGLTALH-MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK---------T------  156 (183)
T ss_dssp             HHHTTCCTT--CCCSSSSCCHHH-HHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHH---------T------
T ss_pred             HHHcCCCCC--cCCCCCCCCHHH-HHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhcc---------C------
Confidence            999999998  677 89999999 9999999999999999999988888778888877663211         1      


Q ss_pred             CCCCChHHHHHHhCChhHHHHHHh
Q 010920          206 FHQPDPSLTIYDQATKIRYKFASA  229 (497)
Q Consensus       206 ~~g~~pl~~a~~~~~~~~~~~l~~  229 (497)
                      ..+.+++++++..+....+++|.+
T Consensus       157 ~~~~~~l~~a~~~~~~~i~~~L~~  180 (183)
T 3deo_A          157 TPKGNPMQFGRRIGLEKVINVLEG  180 (183)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccHHHHHHHcCHHHHHHHHHH
Confidence            346788999999888888887754

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.79  E-value=2.2e-21  Score=182.96  Aligned_cols=168  Identities=12%  Similarity=-0.009  Sum_probs=135.3

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHH
Q 010920           15 QSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLL   94 (497)
Q Consensus        15 ~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~L   94 (497)
                      ..+.++++.++..|+.+.+..+...+.++   +..|.||||+|+..|+ .+++++|+                       
T Consensus        13 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~---~~~g~t~L~~A~~~g~-~~~v~~Ll-----------------------   65 (244)
T 3ui2_A           13 GEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKAD-EQALSQLL-----------------------   65 (244)
T ss_dssp             TTTEEEEEEEESSCCCCEEEEGGGSCHHH---HHHHHHHHHHHHTTTC-HHHHHHTT-----------------------
T ss_pred             CCCccHHHHHHHcCCCccccccccccccc---ccCCCCHHHHHHHcCC-HHHHHHHH-----------------------
Confidence            35667777777777777766655554443   3578999999999854 55555544                       


Q ss_pred             HhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccc-cCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCC
Q 010920           95 LSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE-FYGPSFLEALAPQLMSRKIWVVVIPCGTANPSK  173 (497)
Q Consensus        95 l~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~-~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~  173 (497)
                       + |++++.+|..|.||||+|+..|+.++|++|+++|++++  .++ ..|.|||| +|+..|+.+++++|+++|++.+..
T Consensus        66 -~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~ga~~~~~  140 (244)
T 3ui2_A           66 -E-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD--HRDMRGGLTALH-MAAGYVRPEVVEALVELGADIEVE  140 (244)
T ss_dssp             -T-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT--CCCSSSCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             -c-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC--cCCCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCC
Confidence             5 56677789999999999999999999999999999998  677 88999999 999999999999999999999888


Q ss_pred             CcccccccccCCcCcCHHHHHHHhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHh
Q 010920          174 PLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA  229 (497)
Q Consensus       174 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~  229 (497)
                      +..+.++++.+....               ....+.+||++|+..+....++++..
T Consensus       141 d~~g~t~l~~A~~~~---------------~~~~~~~~l~~a~~~g~~~iv~~L~~  181 (244)
T 3ui2_A          141 DERGLTALELAREIL---------------KTTPKGNPMQFGRRIGLEKVINVLEG  181 (244)
T ss_dssp             CTTCCCHHHHHHHHH---------------TTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHH---------------hccCCCCHHHHHHHcChHHHHHHHHH
Confidence            888888888766211               12567899999999999888887764

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.78  E-value=8.3e-19  Score=146.70  Aligned_cols=110  Identities=9%  Similarity=-0.038  Sum_probs=88.6

Q ss_pred             CCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHH
Q 010920           47 DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRA  126 (497)
Q Consensus        47 d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~  126 (497)
                      +..|.||||+|+..|+ .+++++|+                        +.|++++.+|..|.||||+|+..|+.+++++
T Consensus         4 ~~~~~~~l~~A~~~~~-~~~v~~ll------------------------~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~   58 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGD-LDEVKDYV------------------------AKGEDVNRTLEGGRKPLHYAADCGQLEILEF   58 (123)
T ss_dssp             ---CHHHHHHHHHTTC-HHHHHHHH------------------------HTTCCTTSCCTTSSCHHHHHHHTTCHHHHHH
T ss_pred             ccccchHHHHHHHcCC-HHHHHHHH------------------------HcCCCcCccCCCCCcHHHHHHHcCCHHHHHH
Confidence            4578899999999855 55555555                        5555666788899999999999999999999


Q ss_pred             HHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccC
Q 010920          127 IESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPS  184 (497)
Q Consensus       127 Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~  184 (497)
                      |+++|++++  .+|..|.|||| +|+..++.+++++|+++|++.+..+..+.++++.+
T Consensus        59 Ll~~g~~~~--~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           59 LLLKGADIN--APDKHHITPLL-SAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             HHTTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             HHHcCCCCC--cCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence            999999999  89999999999 99999999999999999987655554344444433

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.78  E-value=2.4e-19  Score=174.33  Aligned_cols=111  Identities=20%  Similarity=0.129  Sum_probs=90.3

Q ss_pred             hcCCCchHHHHHHHc---CCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHH
Q 010920           13 QRQSKDELLYQWVIA---GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEP   89 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~---g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~   89 (497)
                      .+..|.||||+|+..   |+.+++++||++|+++|.+|..|.||||+|+..|+ .+++++|                   
T Consensus       186 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~-~~~v~~L-------------------  245 (301)
T 2b0o_E          186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQ-PDCLKLL-------------------  245 (301)
T ss_dssp             SCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTC-HHHHHHH-------------------
T ss_pred             cCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHH-------------------
Confidence            367999999999997   89999999999999999999999999999999854 5555554                   


Q ss_pred             HHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCH
Q 010920           90 TVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSR  157 (497)
Q Consensus        90 ~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~  157 (497)
                           +++|++++.+|..|.||||+|+..|+.+++++|+++|++        .|.|||| +|+..|+.
T Consensus       246 -----l~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~--------~g~tpLh-~A~~~g~~  299 (301)
T 2b0o_E          246 -----LKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG--------TFAFPLH-VDYSWVIS  299 (301)
T ss_dssp             -----HHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--------TTSSCCC---------
T ss_pred             -----HHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--------CCCChhH-HHHhcCCc
Confidence                 455566677899999999999999999999999998765        4789999 88887753

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.76  E-value=9.1e-20  Score=182.26  Aligned_cols=157  Identities=13%  Similarity=0.060  Sum_probs=127.6

Q ss_pred             CchHHHHHHH-cCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCC------CCCCcCc------c
Q 010920           17 KDELLYQWVI-AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA------NINAYRP------A   83 (497)
Q Consensus        17 G~T~Lh~Aa~-~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga------~~~~~~~------~   83 (497)
                      +.+++++|+. .++.+++++|+++|++.       .||||+|+..|+ .++|++|+++|+      +++..+.      +
T Consensus        65 ~ll~~~~a~~~~~~~~~~~~l~~~g~~~-------~T~Lh~Aa~~G~-~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa  136 (376)
T 2aja_A           65 QLLCLYYAHYNRNAKQLWSDAHKKGIKS-------EVICFVAAITGC-SSALDTLCLLLTSDEIVKVIQAENYQAFRLAA  136 (376)
T ss_dssp             HHHHHHHHHTTTTCTTHHHHHHHHTCCH-------HHHHHHHHHHCC-HHHHHHHTTC--CCSSCC--CHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCCCc-------CCHHHHHHHcCC-HHHHHHHHHcCCcHHHHHHhccCCCCHHHHHH
Confidence            4678888887 57899999999987764       499999999955 999999999998      3333332      8


Q ss_pred             cCCCHHHHHHHHhCCCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccc--cccCCCCHHHHHhh-hcCCH
Q 010920           84 KRGLEPTVRLLLSCGANA---LVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWL--REFYGPSFLEALAP-QLMSR  157 (497)
Q Consensus        84 ~~g~~~~v~~Ll~~ga~~---~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~--~~~~G~T~Lh~~A~-~~~~~  157 (497)
                      ..|+.++|++|+++|+++   +..+.+ .||||+|+..|+.++|++|+++|++++  .  .|..|.|||| +|+ ..|+.
T Consensus       137 ~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~--~~~~d~~g~TpL~-~Aa~~~G~~  212 (376)
T 2aja_A          137 ENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEA--TAMIQAENYYAFR-WAAVGRGHH  212 (376)
T ss_dssp             HTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGH--HHHHHHHHHHHHH-HHHSTTCCH
T ss_pred             HcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccc--hhccCCCCCCHHH-HHHHHCCCH
Confidence            899999999999999762   333333 999999999999999999999999987  5  7889999999 899 99999


Q ss_pred             HHHHHhhhCCCCCCCCCcccccccccCCcCcCHHH
Q 010920          158 KIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRA  192 (497)
Q Consensus       158 ~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~  192 (497)
                      ++|++|+++|++       +.++++.+...++...
T Consensus       213 eiv~~Ll~~ga~-------~~taL~~Aa~~g~~ev  240 (376)
T 2aja_A          213 NVINFLLDCPVM-------LAYAEIHEFEYGEKYV  240 (376)
T ss_dssp             HHHHHHTTSHHH-------HHHHHHCTTTTTTTTH
T ss_pred             HHHHHHHhCCCc-------cchHHHHHHHCCCHHH
Confidence            999999997742       6677777776666543

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.75  E-value=5.2e-18  Score=139.00  Aligned_cols=91  Identities=25%  Similarity=0.371  Sum_probs=74.0

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHH
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTV   91 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v   91 (497)
                      +.+.+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+ .+++++|+                    
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~-~~~v~~Ll--------------------   77 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGH-LEVVKLLL--------------------   77 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC-HHHHHHHH--------------------
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC-HHHHHHHH--------------------
Confidence            346789999999999999999999999999999999999999999999744 55555444                    


Q ss_pred             HHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHH
Q 010920           92 RLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI  127 (497)
Q Consensus        92 ~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~L  127 (497)
                          ++|++++.+|..|.||||+|+..|+.+++++|
T Consensus        78 ----~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           78 ----EAGADVXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             ----HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             ----HcCCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence                45556666788899999999999999999876

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.74  E-value=1.4e-18  Score=161.10  Aligned_cols=112  Identities=14%  Similarity=0.068  Sum_probs=92.2

Q ss_pred             cCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHH
Q 010920           46 MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR  125 (497)
Q Consensus        46 ~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~  125 (497)
                      .+..|.||||+|+..|+ .+++++|+                        +.|++++.+|..|.||||+|+..|+.++|+
T Consensus        69 ~~~~g~t~L~~A~~~g~-~~~v~~Ll------------------------~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  123 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGN-LSWLRECL------------------------DNRVGVNGLDKAGSTALYWACHGGHKDIVE  123 (222)
T ss_dssp             HEEEESCHHHHHHHHTC-HHHHHHHH------------------------HTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             cccccccccccccccCc-HHHHHHHH------------------------hCCCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence            45678999999999855 55555555                        555666678899999999999999999999


Q ss_pred             HHHHC-CCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCC
Q 010920          126 AIESH-ICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSL  185 (497)
Q Consensus       126 ~Ll~~-g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~  185 (497)
                      +|+++ |++++  .+|..|.|||| +|+..|+.+++++|+++|++.+..+..+.++++.+.
T Consensus       124 ~Ll~~~g~~~~--~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  181 (222)
T 3ehr_A          124 MLFTQPNIELN--QQNKLGDTALH-AAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMAT  181 (222)
T ss_dssp             HHTTSTTCCCC--CCCTTSCCHHH-HHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCC
T ss_pred             HHHcCCCCCcc--ccCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhc
Confidence            99999 99999  89999999999 999999999999999999877655544444444444

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.74  E-value=1.7e-18  Score=142.89  Aligned_cols=102  Identities=25%  Similarity=0.298  Sum_probs=89.0

Q ss_pred             ccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHH
Q 010920           45 WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV  124 (497)
Q Consensus        45 ~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v  124 (497)
                      .+|.+|.||||+|+..|+ .+++++|+                        ++|++++.+|..|.||||+|+..|+.+++
T Consensus         4 ~~d~~g~t~L~~A~~~~~-~~~~~~Ll------------------------~~g~~~~~~d~~g~t~L~~A~~~~~~~~~   58 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGH-AEEVKKLL------------------------SKGADVNARSKDGNTPLHLAAKNGHAEIV   58 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTC-HHHHHHHT------------------------TTTCCSSCCCSSSCCTTHHHHTTTCHHHH
T ss_pred             ccCCCCCCHHHHHHHcCC-HHHHHHHH------------------------HcCCCCCCcCCCCCCHHHHHHHcCcHHHH
Confidence            478899999999999855 55555554                        55566677889999999999999999999


Q ss_pred             HHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCC
Q 010920          125 RAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKP  174 (497)
Q Consensus       125 ~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~  174 (497)
                      ++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++.+...
T Consensus        59 ~~Ll~~g~~~~--~~d~~g~tpl~-~A~~~~~~~~~~~Ll~~ga~~n~~~  105 (115)
T 2l6b_A           59 KLLLAKGADVN--ARSKDGNTPEH-LAKKNGHHEIVKLLDAKGADVNARS  105 (115)
T ss_dssp             HHHTTTTCCTT--CCCTTCCCTTH-HHHTTTCHHHHHHHHTTSSSHHHHS
T ss_pred             HHHHHcCCCCc--ccCCCCCCHHH-HHHHCCCHHHHHHHHHcCCCCCcCC
Confidence            99999999999  89999999999 9999999999999999999865444

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.72  E-value=1.3e-16  Score=153.17  Aligned_cols=165  Identities=9%  Similarity=-0.077  Sum_probs=121.0

Q ss_pred             hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccc-c-CC-----------------------------CCChHHHHHHHhC
Q 010920           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEW-M-DK-----------------------------EGKTPLIVACMDS   61 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~-~-d~-----------------------------~G~TpLh~Aa~~g   61 (497)
                      .|.-+.+.|+.+...|+..+.+++...-..... + +.                             ...++|+.|+..|
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~  141 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR  141 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence            356889999999999998877766432111110 0 00                             0123455555553


Q ss_pred             CcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHc---CCHHHHHHHHHCCCcccccc
Q 010920           62 GLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIK---GHINVVRAIESHICYFCGWL  138 (497)
Q Consensus        62 ~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~---g~~~~v~~Ll~~g~~i~~~~  138 (497)
                      + .+.++.|+..|++++..                  ..++..+..|.||||+|+..   |+.+++++|+++|++++  .
T Consensus       142 d-~~~~~~ll~~g~~~~~~------------------~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in--~  200 (278)
T 1dcq_A          142 D-IFGLLQAYADGVDLTEK------------------IPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD--K  200 (278)
T ss_dssp             C-HHHHHHHHHTTCCTTSB------------------CCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT--C
T ss_pred             c-cHHHHHHHHhhcchhhh------------------ccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcc--c
Confidence            3 44444444444443321                  00444578899999999999   89999999999999999  8


Q ss_pred             cccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCCCCCCCCCCChHHHHHHh
Q 010920          139 REFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQ  218 (497)
Q Consensus       139 ~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g~~pl~~a~~~  218 (497)
                      +|..|.|||| +|+..|+.+++++|+++|++.+                               ..+..|.||||+|+..
T Consensus       201 ~d~~g~TpLh-~A~~~g~~~~v~~Ll~~gad~~-------------------------------~~d~~g~tpL~~A~~~  248 (278)
T 1dcq_A          201 QTGKGSTALH-YCCLTDNAECLKLLLRGKASIE-------------------------------IANESGETPLDIAKRL  248 (278)
T ss_dssp             CCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTT-------------------------------CCCTTSCCHHHHHHHT
T ss_pred             cCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCC-------------------------------CccCCCCCHHHHHHHc
Confidence            9999999999 9999999999999999987653                               3456799999999999


Q ss_pred             CChhHHHHHHhC
Q 010920          219 ATKIRYKFASAN  230 (497)
Q Consensus       219 ~~~~~~~~l~~~  230 (497)
                      ++.+.+++|...
T Consensus       249 ~~~~~v~~Ll~~  260 (278)
T 1dcq_A          249 KHEHCEELLTQA  260 (278)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHc
Confidence            999999988754

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.70  E-value=4.8e-17  Score=161.93  Aligned_cols=112  Identities=19%  Similarity=0.178  Sum_probs=82.5

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHH
Q 010920           15 QSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLL   94 (497)
Q Consensus        15 ~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~L   94 (497)
                      ..|.||||+|+..|+.++|++||++|+++|.+|..|.||||+|+..|+ .+++++|+                       
T Consensus       233 ~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~-~~~v~~LL-----------------------  288 (368)
T 3jue_A          233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGH-TGLACLFL-----------------------  288 (368)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC-HHHHHHHH-----------------------
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCc-HHHHHHHH-----------------------
Confidence            689999999999999999999999999999999999999999999844 55555555                       


Q ss_pred             HhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCccc-ccccccCCCCHHHHHhh
Q 010920           95 LSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC-GWLREFYGPSFLEALAP  152 (497)
Q Consensus        95 l~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~-~~~~~~~G~T~Lh~~A~  152 (497)
                       ++|++++.+|..|.||||+|+..|+.+++++|+..+..-. ....+..+.|+|+ ++.
T Consensus       289 -~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~-i~~  345 (368)
T 3jue_A          289 -KRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLD-IFR  345 (368)
T ss_dssp             -HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred             -HCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHH-HHH
Confidence             5556667789999999999999999999999998764321 1145667889998 443

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.68  E-value=1.3e-16  Score=130.62  Aligned_cols=93  Identities=15%  Similarity=0.218  Sum_probs=77.9

Q ss_pred             ccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHH
Q 010920           43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN  122 (497)
Q Consensus        43 ~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~  122 (497)
                      +...|.+|.||||+|+..|+ .+++++|+                        ++|++++.+|..|.||||+|+..|+.+
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~-~~~v~~Ll------------------------~~g~~i~~~d~~g~tpLh~A~~~~~~~   71 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQ-DDEVRILM------------------------ANGADVAAKDKNGSTPLHLAARNGHLE   71 (110)
T ss_dssp             -----CCHHHHHHHHHHHTC-HHHHHHHH------------------------HTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             ccccCCccchHHHHHHHcCC-HHHHHHHH------------------------HcCCCCCccCCCCCCHHHHHHHcCCHH
Confidence            34567889999999999955 55555555                        555666678899999999999999999


Q ss_pred             HHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHh
Q 010920          123 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV  163 (497)
Q Consensus       123 ~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~L  163 (497)
                      ++++|+++|++++  .+|..|.|||| +|+..++.+++++|
T Consensus        72 ~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           72 VVKLLLEAGADVX--AQDKFGKTAFD-ISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHHHH
T ss_pred             HHHHHHHcCCCcc--ccccCCCcHHH-HHHHcCCHHHHHHh
Confidence            9999999999999  89999999999 99999999999987

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=99.41  E-value=8.8e-14  Score=101.07  Aligned_cols=55  Identities=35%  Similarity=0.849  Sum_probs=50.5

Q ss_pred             CCcccccccccCCceEEe--CCCCccchHHHHHHHhccCcccccccccccceeEeee
Q 010920          442 SSSSCVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT  496 (497)
Q Consensus       442 ~~~~C~iC~~~~~~~~~~--pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~  496 (497)
                      ++..|+||++.+.+++++  ||||+++|..|+.+|...+..||+||++|...+++|.
T Consensus         7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~   63 (64)
T 2vje_A            7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYF   63 (64)
T ss_dssp             GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEEC
T ss_pred             CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeec
Confidence            455899999999999988  9999966999999999877789999999999999995

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=99.39  E-value=1.4e-13  Score=99.66  Aligned_cols=55  Identities=27%  Similarity=0.804  Sum_probs=50.0

Q ss_pred             CCcccccccccCCceEEe--CCCCccchHHHHHHHhccCcccccccccccceeEeee
Q 010920          442 SSSSCVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT  496 (497)
Q Consensus       442 ~~~~C~iC~~~~~~~~~~--pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~  496 (497)
                      ....|+||++.+.+++++  ||||+++|..|+.++.....+||+||++|..++++|.
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~   62 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFI   62 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEE
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEec
Confidence            345899999999998887  9999966999999999877899999999999999996

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=6.8e-13  Score=97.44  Aligned_cols=53  Identities=28%  Similarity=0.734  Sum_probs=47.4

Q ss_pred             CCCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccceeEeee
Q 010920          440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT  496 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~  496 (497)
                      ..+...|.||++.+.+++++||||+++|..|+..+.    +||+||.+|...+++|.
T Consensus        12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~CR~~i~~~~~i~~   64 (68)
T 2ea5_A           12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ----QCPMCRQFVQESFALSG   64 (68)
T ss_dssp             CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCS----SCTTTCCCCCCEECCCS
T ss_pred             CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCC----CCCCCCcchhceEEeec
Confidence            345679999999999999999999955999999765    89999999999999984

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=99.18  E-value=5.2e-12  Score=95.76  Aligned_cols=52  Identities=33%  Similarity=0.948  Sum_probs=47.1

Q ss_pred             CCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccceeEeee
Q 010920          441 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT  496 (497)
Q Consensus       441 ~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~  496 (497)
                      .+...|+||++.+.+++++||||.++|..|+..+.    .||+||.+|...+++|.
T Consensus        16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~i~~   67 (79)
T 2yho_A           16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEHVQHVYL   67 (79)
T ss_dssp             HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS----BCTTTCCBCCEEEECBC
T ss_pred             CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC----cCCCCCchhhCeEEEEe
Confidence            44568999999999999999999955999999886    99999999999999984

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=99.13  E-value=1.3e-11  Score=92.51  Aligned_cols=52  Identities=29%  Similarity=0.735  Sum_probs=47.2

Q ss_pred             CCCCcccccccccCCceEEeCCCCc-cchHHHHHHHhccCcccccccccccceeEeee
Q 010920          440 DGSSSSCVICWEAPVEGACVPCGHM-AGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT  496 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~pC~H~-~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~  496 (497)
                      ..+...|+||++.+.+++++||||. | |..|+..|.    .||+||.+|...+++|.
T Consensus        21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~-C~~C~~~~~----~CP~Cr~~i~~~~~i~~   73 (74)
T 4ic3_A           21 LQEEKLCKICMDRNIAIVFVPCGHLVT-CKQCAEAVD----KCPMCYTVITFKQKILM   73 (74)
T ss_dssp             HHHHTBCTTTSSSBCCEEEETTCCBCC-CHHHHTTCS----BCTTTCCBCSEEEECBC
T ss_pred             CccCCCCCCCCCCCCCEEEcCCCChhH-HHHhhhcCc----cCCCcCcCccCcEEEee
Confidence            3455699999999999999999999 6 999999984    99999999999999984

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=4.2e-11  Score=88.85  Aligned_cols=56  Identities=21%  Similarity=0.665  Sum_probs=48.6

Q ss_pred             CCCCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccceeEeee
Q 010920          439 DDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT  496 (497)
Q Consensus       439 ~~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~  496 (497)
                      +..+...|+||++.+.+ +.+||+|.| |..|+.+|......||+||.++.....+|.
T Consensus        11 ~~~~~~~C~IC~~~~~~-~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~   66 (70)
T 2ecn_A           11 QLTDEEECCICMDGRAD-LILPCAHSF-CQKCIDKWSDRHRNCPICRLQMTGANESSG   66 (70)
T ss_dssp             CCCCCCCCSSSCCSCCS-EEETTTEEE-CHHHHHHSSCCCSSCHHHHHCTTCCCCCCC
T ss_pred             cCCCCCCCeeCCcCccC-cccCCCCcc-cHHHHHHHHHCcCcCCCcCCcccCCCcccc
Confidence            34566799999999999 888999999 999999999888899999999987666553

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=7.3e-11  Score=87.76  Aligned_cols=50  Identities=26%  Similarity=0.660  Sum_probs=44.8

Q ss_pred             CCCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920          440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  490 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  490 (497)
                      ..+...|+||++.+.+++.+||||.| |..|+.+|......||+||..|..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           12 SLTVPECAICLQTCVHPVSLPCKHVF-CYLCVKGASWLGKRCALCRQEIPE   61 (71)
T ss_dssp             SSSCCBCSSSSSBCSSEEEETTTEEE-EHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred             CCCCCCCccCCcccCCCEEccCCCHH-HHHHHHHHHHCCCcCcCcCchhCH
Confidence            34556999999999999999999999 999999998877899999998853

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=2.9e-11  Score=90.92  Aligned_cols=51  Identities=29%  Similarity=0.808  Sum_probs=46.1

Q ss_pred             CCCcccccccccCCceEEeCCCCc-cchHHHHHHHhccCcccccccccccceeEeee
Q 010920          441 GSSSSCVICWEAPVEGACVPCGHM-AGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT  496 (497)
Q Consensus       441 ~~~~~C~iC~~~~~~~~~~pC~H~-~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~  496 (497)
                      .+...|+||++.+.+++++||||. | |..|+.++.    .||+||.+|...+++|.
T Consensus        23 ~~~~~C~IC~~~~~~~~~~pCgH~~~-C~~C~~~~~----~CP~Cr~~i~~~~~i~~   74 (75)
T 2ecg_A           23 QEEKLCKICMDRNIAIVFVPCGHLVT-CKQCAEAVD----KCPMCYTVITFKQKIFM   74 (75)
T ss_dssp             HHHHSCSSSCSSCCCBCCSSSCCCCB-CHHHHHHCS----BCTTTCCBCCCCCBCCC
T ss_pred             CCCCCCCcCCCCCCCEEEecCCCHHH-HHHHhhCCC----CCccCCceecCcEEEec
Confidence            445689999999999999999999 6 999998765    89999999999999985

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.04  E-value=1.7e-10  Score=88.26  Aligned_cols=50  Identities=24%  Similarity=0.472  Sum_probs=45.3

Q ss_pred             CCCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920          440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  490 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  490 (497)
                      ..+...|+||++.+.+++.+||||.| |..|+.+|......||+||.++..
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~   61 (81)
T 2csy_A           12 EEIPFRCFICRQAFQNPVVTKCRHYF-CESCALEHFRATPRCYICDQPTGG   61 (81)
T ss_dssp             CCCCSBCSSSCSBCCSEEECTTSCEE-EHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred             CCCCCCCcCCCchhcCeeEccCCCHh-HHHHHHHHHHCCCcCCCcCccccc
Confidence            45567999999999999999999999 999999999877889999999864

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.04  E-value=1.3e-10  Score=86.63  Aligned_cols=55  Identities=22%  Similarity=0.479  Sum_probs=47.2

Q ss_pred             ccCCCCCcccccccccCCceEEe-CCCCccchHHHHHHHhccCccccccccccccee
Q 010920          437 VKDDGSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVI  492 (497)
Q Consensus       437 ~~~~~~~~~C~iC~~~~~~~~~~-pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~  492 (497)
                      ..+..+...|+||++.+.+++.+ ||||.| |..|+.+|...+..||+||.++....
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~~~   64 (72)
T 2djb_A            9 LSELTPYILCSICKGYLIDATTITECLHTF-CKSCIVRHFYYSNRCPKCNIVVHQTQ   64 (72)
T ss_dssp             CCCCCGGGSCTTTSSCCSSCEECSSSCCEE-CHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred             HhhcCCCCCCCCCChHHHCcCEECCCCCHH-HHHHHHHHHHcCCcCCCcCcccCccc
Confidence            33456677999999999998887 999999 99999999987789999999986543

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.03  E-value=5.9e-11  Score=88.35  Aligned_cols=54  Identities=35%  Similarity=0.791  Sum_probs=46.4

Q ss_pred             CCCcccccccccCCce-------EEeCCCCccchHHHHHHHhccCccccccccccc--ceeEee
Q 010920          441 GSSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRLY  495 (497)
Q Consensus       441 ~~~~~C~iC~~~~~~~-------~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~--~~~~~~  495 (497)
                      .+...|+||++.+.+.       +.+||||.| |..|+.+|...+..||+||.++.  .++++|
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~   70 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY   70 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCCChH-hHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence            4556999999988775       888999999 99999999988889999999985  456666

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.02  E-value=9.4e-11  Score=85.25  Aligned_cols=54  Identities=35%  Similarity=0.771  Sum_probs=46.3

Q ss_pred             CCcccccccccCCce-------EEeCCCCccchHHHHHHHhccCccccccccccc--ceeEeee
Q 010920          442 SSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRLYT  496 (497)
Q Consensus       442 ~~~~C~iC~~~~~~~-------~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~--~~~~~~~  496 (497)
                      +...|+||++.+.+.       +.+||||.| |..|+.+|...+..||+||.++.  ..+++|.
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l   64 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIYI   64 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEE-EHHHHHHHHHHCSBCTTTCCBCTTTCEEECCC
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCch-hHHHHHHHHHcCCCCCCCCccCCccceeeeeC
Confidence            345899999987765       788999999 99999999988889999999995  5777763

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=4.8e-10  Score=83.83  Aligned_cols=50  Identities=26%  Similarity=0.698  Sum_probs=43.8

Q ss_pred             CCCCcccccccccCCceEEeCCCCccchHHHHHHHhc---cCcccccccccccc
Q 010920          440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA---KKGDCPVCRTKINQ  490 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~---~~~~Cp~Cr~~i~~  490 (497)
                      ..+...|+||++.+.+++.+||||.| |..|+..|..   ....||+||.++..
T Consensus        17 ~~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           17 LQEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCCBCTTTCSBCSSEEECTTCCEE-EHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             CccCCEeccCCcccCCeEEcCCCChh-hHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            45567999999999999999999999 9999999986   34689999998853

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.99  E-value=1.6e-10  Score=85.16  Aligned_cols=53  Identities=26%  Similarity=0.765  Sum_probs=46.2

Q ss_pred             CCcccccccccCCc-eEEeCCCCccchHHHHHHHhccCcccccccccccceeEee
Q 010920          442 SSSSCVICWEAPVE-GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY  495 (497)
Q Consensus       442 ~~~~C~iC~~~~~~-~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~  495 (497)
                      ....|+||++.+.+ ++.+||||.| |..|+.+|...+..||+||.++...+..+
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~   57 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVHTI   57 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEE-STTHHHHHHHHSCSTTTTCCCCCCEECCC
T ss_pred             CCCCCeeCCccccCCcEecCCCCee-HHHHHHHHHhCcCcCcCCChhhHhhhhcc
Confidence            44589999999988 4788999999 99999999987889999999998766543

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=98.99  E-value=3.7e-10  Score=83.40  Aligned_cols=53  Identities=23%  Similarity=0.621  Sum_probs=44.8

Q ss_pred             CCCCcccccccccC---CceEEeCCCCccchHHHHHHHhccCcccccccccccceeE
Q 010920          440 DGSSSSCVICWEAP---VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIR  493 (497)
Q Consensus       440 ~~~~~~C~iC~~~~---~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~  493 (497)
                      ......|+||++.+   ..++.+||+|.| |..|+..|...+..||+||..|...++
T Consensus        11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~   66 (69)
T 2kiz_A           11 EDTEEKCTICLSILEEGEDVRRLPCMHLF-HQVCVDQWLITNKKCPICRVDIEAQLP   66 (69)
T ss_dssp             TTCCCSBTTTTBCCCSSSCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred             CCCCCCCeeCCccccCCCcEEEeCCCCHH-HHHHHHHHHHcCCCCcCcCccccCcCC
Confidence            45567999998876   457788999999 999999999888899999999876554

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=98.98  E-value=1.4e-10  Score=98.36  Aligned_cols=50  Identities=32%  Similarity=0.765  Sum_probs=45.2

Q ss_pred             CCcccccccccCCceEEeCCCCccchHHHHHHHhccCccccccccccccee
Q 010920          442 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVI  492 (497)
Q Consensus       442 ~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~  492 (497)
                      ++..|+||++.+.+++.+||||.| |..|+..|...+..||+||.+|....
T Consensus        52 ~~~~C~iC~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~  101 (138)
T 4ayc_A           52 NELQCIICSEYFIEAVTLNCAHSF-CSYCINEWMKRKIECPICRKDIKSKT  101 (138)
T ss_dssp             HHSBCTTTCSBCSSEEEETTSCEE-EHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred             ccCCCcccCcccCCceECCCCCCc-cHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence            345799999999999999999999 99999999988889999999997654

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.97  E-value=2.1e-10  Score=84.74  Aligned_cols=50  Identities=36%  Similarity=0.804  Sum_probs=43.4

Q ss_pred             CCCCcccccccccCCce-------EEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920          440 DGSSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  490 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~-------~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  490 (497)
                      ..+...|+||++.+.+.       +.+||||.| |..|+.+|...+..||+||.+|..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEE-EHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCCcccCccccccccccCCeEeCCCCChh-cHHHHHHHHHcCCCCCCCCCccCc
Confidence            44566999999988765       888999999 999999999878899999998864

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.95  E-value=9.6e-10  Score=84.80  Aligned_cols=49  Identities=33%  Similarity=0.696  Sum_probs=44.0

Q ss_pred             CCCCcccccccccCCceEEeCCCCccchHHHHHHHhcc------Cccccccccccc
Q 010920          440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK------KGDCPVCRTKIN  489 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~------~~~Cp~Cr~~i~  489 (497)
                      ..+...|+||++.+.+++.+||||.| |..|+..|...      ...||+||.++.
T Consensus        16 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~   70 (85)
T 2ecw_A           16 IKEEVTCPICLELLKEPVSADCNHSF-CRACITLNYESNRNTDGKGNCPVCRVPYP   70 (85)
T ss_dssp             CCTTTSCTTTCSCCSSCEECTTSCCB-CHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred             CccCCCCcCCChhhCcceeCCCCCHH-HHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence            45567999999999999999999999 99999999876      678999999885

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.93  E-value=3.9e-10  Score=79.21  Aligned_cols=47  Identities=32%  Similarity=0.726  Sum_probs=41.6

Q ss_pred             CCcccccccccCCc----eEEeCCCCccchHHHHHHHhccCccccccccccc
Q 010920          442 SSSSCVICWEAPVE----GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  489 (497)
Q Consensus       442 ~~~~C~iC~~~~~~----~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~  489 (497)
                      ....|+||++.+.+    ++.+||+|.| |..|+.+|......||+||.+|.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLL-HRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEE-ETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcc-cHHHHHHHHHcCCcCCCCCCcCC
Confidence            34589999998865    8889999999 99999999987789999999875

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=4.5e-10  Score=82.14  Aligned_cols=50  Identities=22%  Similarity=0.532  Sum_probs=43.8

Q ss_pred             CCCCcccccccccCCceEEeCCCCccchHHHHHHHhc-cCcccccccccccc
Q 010920          440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKINQ  490 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i~~  490 (497)
                      ..+...|+||++.+.+++.+||||.| |..|+.+|.. ....||+||.++..
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           12 VEDKYKCEKCHLVLCSPKQTECGHRF-CESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             CCCCEECTTTCCEESSCCCCSSSCCC-CHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             CCcCCCCCCCChHhcCeeECCCCCHH-HHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            45567999999999999989999999 9999999994 55789999998854

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=98.92  E-value=5.2e-10  Score=83.78  Aligned_cols=49  Identities=22%  Similarity=0.624  Sum_probs=43.5

Q ss_pred             CCCCCcccccccccCCceEEeC-CCCccchHHHHHHHhccC--cccccccccc
Q 010920          439 DDGSSSSCVICWEAPVEGACVP-CGHMAGCMSCLSEIKAKK--GDCPVCRTKI  488 (497)
Q Consensus       439 ~~~~~~~C~iC~~~~~~~~~~p-C~H~~~C~~C~~~~~~~~--~~Cp~Cr~~i  488 (497)
                      +..+...|+||++.+.+++.+| |||.| |..|+..|...+  ..||+||.++
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~   62 (74)
T 2yur_A           11 PIPDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQND   62 (74)
T ss_dssp             CSCGGGSCSSSCCCCTTCEECSSSCCEE-CTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred             cCCCCCCCcCCChHHhCCeEcCCCCCHH-HHHHHHHHHHhcCCCcCCCCCCcC
Confidence            3556779999999999999999 99999 999999999754  6899999975

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.91  E-value=6.9e-10  Score=86.73  Aligned_cols=50  Identities=34%  Similarity=0.685  Sum_probs=43.6

Q ss_pred             CCCCcccccccccCCc---eEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920          440 DGSSSSCVICWEAPVE---GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  490 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~---~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  490 (497)
                      ..+...|+||++.+..   ++.+||+|.| |..|+..|...+..||+||..+..
T Consensus        37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~F-h~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           37 VGQEMCCPICCSEYVKGDVATELPCHHYF-HKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             SSSCSEETTTTEECCTTCEEEEETTTEEE-EHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             cCCCCCCcccChhhcCCCcEEecCCCChH-HHHHHHHHHHcCCcCcCcCccCCC
Confidence            3456699999998776   7788999999 999999999888899999998754

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=98.91  E-value=9.9e-10  Score=83.24  Aligned_cols=49  Identities=16%  Similarity=0.169  Sum_probs=44.2

Q ss_pred             CCCCcccccccccCCceEEeCCCCccchHHHHHHHhcc-Cccccccccccc
Q 010920          440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKIN  489 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~-~~~Cp~Cr~~i~  489 (497)
                      ..+...|+||++.+.+++.+||||.| |..|+.+|... ...||+||.++.
T Consensus         5 ~~~~~~C~IC~~~~~~Pv~~~CgH~f-c~~Ci~~~~~~~~~~CP~C~~~~~   54 (78)
T 1t1h_A            5 FPEYFRCPISLELMKDPVIVSTGQTY-ERSSIQKWLDAGHKTCPKSQETLL   54 (78)
T ss_dssp             CSSSSSCTTTSCCCSSEEEETTTEEE-EHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred             CcccCCCCCccccccCCEEcCCCCee-cHHHHHHHHHHCcCCCCCCcCCCC
Confidence            34567999999999999999999999 99999999986 688999999984

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.91  E-value=4.7e-10  Score=84.10  Aligned_cols=55  Identities=24%  Similarity=0.478  Sum_probs=44.9

Q ss_pred             cCCCCCcccccccccCCc---eEEeCCCCccchHHHHHHHhccCcccccccccccceeE
Q 010920          438 KDDGSSSSCVICWEAPVE---GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIR  493 (497)
Q Consensus       438 ~~~~~~~~C~iC~~~~~~---~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~  493 (497)
                      .+......|+||++.+.+   +..+||+|.| |..|+.+|......||+||.+|.....
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-~~~Ci~~~~~~~~~CP~Cr~~~~~~~~   67 (74)
T 2ep4_A           10 KELNLHELCAVCLEDFKPRDELGICPCKHAF-HRKCLIKWLEVRKVCPLCNMPVLQLAQ   67 (74)
T ss_dssp             CCCCCSCBCSSSCCBCCSSSCEEEETTTEEE-EHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred             ccCCCCCCCcCCCcccCCCCcEEEcCCCCEe-cHHHHHHHHHcCCcCCCcCcccccccc
Confidence            335566799999998653   4556999999 999999999877899999999876544

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.90  E-value=1.1e-09  Score=85.12  Aligned_cols=49  Identities=31%  Similarity=0.651  Sum_probs=43.3

Q ss_pred             CCCCcccccccccCCc----eEEeCCCCccchHHHHHHHhccC---ccccccccccc
Q 010920          440 DGSSSSCVICWEAPVE----GACVPCGHMAGCMSCLSEIKAKK---GDCPVCRTKIN  489 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~----~~~~pC~H~~~C~~C~~~~~~~~---~~Cp~Cr~~i~  489 (497)
                      ..+...|+||++.+.+    ++.+||||.| |..|+.+|....   ..||+||.++.
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~   67 (88)
T 2ct2_A           12 LREVLECPICMESFTEEQLRPKLLHCGHTI-CRQCLEKLLASSINGVRCPFCSKITR   67 (88)
T ss_dssp             CCSCCBCTTTCCBCCTTSSCEEECSSSCEE-EHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred             ccCCCCCccCCccccccCCCeEECCCCChh-hHHHHHHHHHcCCCCcCCCCCCCccc
Confidence            4566799999999998    9999999999 999999998754   78999999773

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.90  E-value=5.9e-10  Score=78.23  Aligned_cols=47  Identities=23%  Similarity=0.693  Sum_probs=41.3

Q ss_pred             CCCcccccccccCCc---eEEeC-CCCccchHHHHHHHhccCcccccccccc
Q 010920          441 GSSSSCVICWEAPVE---GACVP-CGHMAGCMSCLSEIKAKKGDCPVCRTKI  488 (497)
Q Consensus       441 ~~~~~C~iC~~~~~~---~~~~p-C~H~~~C~~C~~~~~~~~~~Cp~Cr~~i  488 (497)
                      ++...|+||++.+.+   ++.+| |+|.| |..|+.+|...+..||+||.++
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f-~~~Ci~~w~~~~~~CP~Cr~~~   53 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGSHSTCPLCRLTV   53 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEE-CTTHHHHTTTTCCSCSSSCCCS
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcc-cHHHHHHHHHcCCcCcCCCCEe
Confidence            345699999999877   77777 99999 9999999998888999999876

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=98.89  E-value=2.3e-10  Score=87.03  Aligned_cols=49  Identities=31%  Similarity=0.725  Sum_probs=43.5

Q ss_pred             CCCCcccccccccCCceEEeCCCCccchHHHHHHHhcc-------Cccccccccccc
Q 010920          440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-------KGDCPVCRTKIN  489 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~-------~~~Cp~Cr~~i~  489 (497)
                      ..+...|+||++.+.+++.+||||.| |..|+.+|...       ...||+||.++.
T Consensus         9 ~~~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~   64 (79)
T 2egp_A            9 VQEEVTCPICLELLTEPLSLDCGHSL-CRACITVSNKEAVTSMGGKSSCPVCGISYS   64 (79)
T ss_dssp             CCCCCEETTTTEECSSCCCCSSSCCC-CHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred             cccCCCCcCCCcccCCeeECCCCCHH-HHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence            45667999999999999999999999 99999998875       578999999884

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.88  E-value=8.6e-10  Score=85.09  Aligned_cols=49  Identities=33%  Similarity=0.758  Sum_probs=43.7

Q ss_pred             CCCCcccccccccCCceEEeCCCCccchHHHHHHHhcc------Cccccccccccc
Q 010920          440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK------KGDCPVCRTKIN  489 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~------~~~Cp~Cr~~i~  489 (497)
                      ..+...|+||++.+.+++.+||||.| |..|+..|...      ...||+||..+.
T Consensus        16 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~   70 (85)
T 2ecv_A           16 VKEEVTCPICLELLTQPLSLDCGHSF-CQACLTANHKKSMLDKGESSCPVCRISYQ   70 (85)
T ss_dssp             CCCCCCCTTTCSCCSSCBCCSSSCCB-CTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred             ccCCCCCCCCCcccCCceeCCCCCHH-HHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence            45567999999999999999999999 99999999875      678999999885

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.86  E-value=1e-09  Score=83.22  Aligned_cols=50  Identities=30%  Similarity=0.653  Sum_probs=42.1

Q ss_pred             CCCCcccccccccCC---ceEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920          440 DGSSSSCVICWEAPV---EGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  490 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~---~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  490 (497)
                      ..+...|+||++.+.   .+..+||+|.| |..|+.+|...+..||+||..+..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~   64 (78)
T 2ect_A           12 VGSGLECPVCKEDYALGESVRQLPCNHLF-HDSCIVPWLEQHDSCPVCRKSLTG   64 (78)
T ss_dssp             SSSSCCCTTTTSCCCTTSCEEECTTSCEE-ETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred             CCCCCCCeeCCccccCCCCEEEeCCCCee-cHHHHHHHHHcCCcCcCcCCccCC
Confidence            445679999988764   34667999999 999999999888899999998854

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.85  E-value=1.5e-09  Score=85.05  Aligned_cols=49  Identities=22%  Similarity=0.631  Sum_probs=43.1

Q ss_pred             CCCCCcccccccccCCceEEeC-CCCccchHHHHHHHhcc--Ccccccccccc
Q 010920          439 DDGSSSSCVICWEAPVEGACVP-CGHMAGCMSCLSEIKAK--KGDCPVCRTKI  488 (497)
Q Consensus       439 ~~~~~~~C~iC~~~~~~~~~~p-C~H~~~C~~C~~~~~~~--~~~Cp~Cr~~i  488 (497)
                      ...+...|+||++.+.+++.+| |||.| |..|+..|...  ...||+||.++
T Consensus         9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~   60 (92)
T 3ztg_A            9 PIPDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQND   60 (92)
T ss_dssp             CCCTTTEETTTTEECSSCEECTTTCCEE-CHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred             cCCcCCCCCCCChhhcCceECCCCCCHH-HHHHHHHHHHhcCCCcCcCCCCcC
Confidence            3566779999999999999999 99999 99999999863  35899999986

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=8.3e-10  Score=82.96  Aligned_cols=50  Identities=22%  Similarity=0.567  Sum_probs=42.3

Q ss_pred             CCCCcccccccccCCc---eEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920          440 DGSSSSCVICWEAPVE---GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  490 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~---~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  490 (497)
                      ..+...|+||++.+..   ++.+||+|.| |..|+.+|...+..||+||..+..
T Consensus        20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~w~~~~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           20 QSEQTLCVVCMCDFESRQLLRVLPCNHEF-HAKCVDKWLKANRTCPICRADSGP   72 (75)
T ss_dssp             SSSCCEETTTTEECCBTCEEEEETTTEEE-ETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred             cCCCCCCeECCcccCCCCeEEEECCCCHh-HHHHHHHHHHcCCcCcCcCCcCCC
Confidence            3455699999987765   4778999999 999999999888899999998754

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.84  E-value=3.9e-09  Score=76.30  Aligned_cols=44  Identities=27%  Similarity=0.716  Sum_probs=39.2

Q ss_pred             CCCCcccccccccCCceEEeCCCCccchHHHHHHHhc---cCcccccc
Q 010920          440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA---KKGDCPVC  484 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~---~~~~Cp~C  484 (497)
                      ..+...|+||++.+.+++.+||||.| |..|+.+|..   ....||+|
T Consensus        17 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           17 LQEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCBCTTTCSBCSSCEECTTSSEE-CHHHHHHHHHHCSSCCCCSCC
T ss_pred             CccCCCCCcCCchhCCeEEeCCCCcc-hHHHHHHHHHcCCCCCcCcCC
Confidence            45667999999999999999999999 9999999997   34689998

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.83  E-value=1.4e-09  Score=81.76  Aligned_cols=55  Identities=27%  Similarity=0.660  Sum_probs=43.5

Q ss_pred             CCCCcccccccccC--CceEEeC--CCCccchHHHHHHHhc-cCcccccccccccceeEee
Q 010920          440 DGSSSSCVICWEAP--VEGACVP--CGHMAGCMSCLSEIKA-KKGDCPVCRTKINQVIRLY  495 (497)
Q Consensus       440 ~~~~~~C~iC~~~~--~~~~~~p--C~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i~~~~~~~  495 (497)
                      ..++..|+||++.+  .++.++|  |||.| |..|+.+++. ....||.||+++.....+|
T Consensus         8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~f-C~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~   67 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEIDDINFFPCTCGYQI-CRFCWHRIRTDENGLCPACRKPYPEDPAVY   67 (78)
T ss_dssp             CCCCCBCTTTCCBCCTTTTTCCSSTTSCCC-CHHHHHHHTTSSCSBCTTTCCBCSSCSSCC
T ss_pred             cccCCcCCccCccCccccccccccCCCCCc-CHHHHHHHHhcCCCCCCCCCCccCCCchhh
Confidence            45567999999977  4566666  99999 9999999974 3578999999997654444

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.80  E-value=1.9e-09  Score=78.46  Aligned_cols=46  Identities=28%  Similarity=0.652  Sum_probs=37.5

Q ss_pred             Ccccccccc-cCCce----EEeCCCCccchHHHHHHHhc-cCccccccccccc
Q 010920          443 SSSCVICWE-APVEG----ACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKIN  489 (497)
Q Consensus       443 ~~~C~iC~~-~~~~~----~~~pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i~  489 (497)
                      +..|+||++ ...+.    +.+||||.| |..|+.+|.. .+..||+||.++.
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~   54 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVRGAGNCPECGTPLR   54 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCE-EHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHh-HHHHHHHHHHcCCCcCCCCCCccc
Confidence            458999999 44443    568999999 9999999954 4468999999984

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=98.80  E-value=1.5e-09  Score=86.35  Aligned_cols=49  Identities=24%  Similarity=0.676  Sum_probs=43.7

Q ss_pred             CCCCcccccccccCCceEE-eCCCCccchHHHHHHHhccC-ccccccccccc
Q 010920          440 DGSSSSCVICWEAPVEGAC-VPCGHMAGCMSCLSEIKAKK-GDCPVCRTKIN  489 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~-~pC~H~~~C~~C~~~~~~~~-~~Cp~Cr~~i~  489 (497)
                      ..+...|+||++.+.+++. ++|||.| |..|+.+|.... ..||+||.++.
T Consensus        19 l~~~~~C~IC~~~~~~p~~~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~~   69 (100)
T 3lrq_A           19 IAEVFRCFICMEKLRDARLCPHCSKLC-CFSCIRRWLTEQRAQCPHCRAPLQ   69 (100)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCCccCCccccCccccCCCCChh-hHHHHHHHHHHCcCCCCCCCCcCC
Confidence            3455699999999999999 9999999 999999999866 68999999883

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.77  E-value=4.1e-09  Score=74.77  Aligned_cols=44  Identities=32%  Similarity=0.727  Sum_probs=38.4

Q ss_pred             CCCCcccccccccCCceEEeCCCCccchHHHHHHHh---ccCcccccc
Q 010920          440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIK---AKKGDCPVC  484 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~---~~~~~Cp~C  484 (497)
                      ..+...|+||++.+.+++.+||||.| |..|+.+|.   .....||+|
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           12 LQVEASCSVCLEYLKEPVIIECGHNF-CKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SCCCCBCSSSCCBCSSCCCCSSCCCC-CHHHHHHHTTSSCCSCCCSCC
T ss_pred             cccCCCCccCCcccCccEeCCCCCcc-CHHHHHHHHHhcCCCCCCCCC
Confidence            44567999999999999999999999 999999994   345789998

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=98.77  E-value=2.1e-09  Score=85.54  Aligned_cols=49  Identities=24%  Similarity=0.608  Sum_probs=44.1

Q ss_pred             CCCcccccccccCCceEEe-CCCCccchHHHHHHHhccCcccccccccccc
Q 010920          441 GSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  490 (497)
Q Consensus       441 ~~~~~C~iC~~~~~~~~~~-pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  490 (497)
                      .+...|+||++.+.+++.+ ||||.| |..|+..|...+..||+||.++..
T Consensus        20 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           20 DDLLRCGICFEYFNIAMIIPQCSHNY-CSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CCCCCcccCChhhCCcCEECCCCCHh-hHHHHHHHHHCCCCCCCCCCcCCh
Confidence            4456999999999999888 999999 999999999888899999998853

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.75  E-value=3.1e-09  Score=88.29  Aligned_cols=49  Identities=24%  Similarity=0.576  Sum_probs=43.1

Q ss_pred             CCCcccccccccCCceEEeCCCCccchHHHHHHHhcc-Ccccccccccccc
Q 010920          441 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  490 (497)
Q Consensus       441 ~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~  490 (497)
                      .+...|+||++.+.+++.+||||.| |..|+..|... ...||+||.++..
T Consensus        50 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           50 EETFQCICCQELVFRPITTVCQHNV-CKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHHTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             ccCCCCCcCChHHcCcEEeeCCCcc-cHHHHHHHHhHCcCCCCCCCccCCC
Confidence            3456899999999999999999999 99999999874 3589999999865

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=98.74  E-value=5e-09  Score=84.71  Aligned_cols=50  Identities=20%  Similarity=0.596  Sum_probs=45.0

Q ss_pred             CCCCcccccccccCCceEEe-CCCCccchHHHHHHHhccCcccccccccccc
Q 010920          440 DGSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  490 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~-pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  490 (497)
                      ..+...|+||++.+.+++.+ ||||.| |..|+..|...+..||+||..+..
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~   62 (108)
T 2ckl_A           12 LNPHLMCVLCGGYFIDATTIIECLHSF-CKTCIVRYLETSKYCPICDVQVHK   62 (108)
T ss_dssp             HGGGTBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred             cCCcCCCccCChHHhCcCEeCCCCChh-hHHHHHHHHHhCCcCcCCCccccc
Confidence            34567999999999999998 999999 999999999877899999999864

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.73  E-value=8.9e-09  Score=79.07  Aligned_cols=50  Identities=10%  Similarity=0.013  Sum_probs=45.5

Q ss_pred             CCCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920          440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  490 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  490 (497)
                      ..+...|+||++.+.++|.+||||.| |..|+.+|......||+||.++..
T Consensus        11 ~p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~~   60 (85)
T 2kr4_A           11 APDEFRDPLMDTLMTDPVRLPSGTVM-DRSIILRHLLNSPTDPFNRQMLTE   60 (85)
T ss_dssp             CCTTTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CchheECcccCchhcCCeECCCCCEE-CHHHHHHHHhcCCCCCCCcCCCCh
Confidence            45678999999999999999999999 999999999877899999998743

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.71  E-value=8.8e-10  Score=77.51  Aligned_cols=46  Identities=24%  Similarity=0.548  Sum_probs=39.6

Q ss_pred             CCCCcccccccccCCceEEeCCCCccchHHHHHHHhccCccccccccccc
Q 010920          440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  489 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~  489 (497)
                      ..+...|+||++.+.+++.+||||.| |..|+..+.   ..||+||..+.
T Consensus         3 e~~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~~---~~CP~Cr~~~~   48 (56)
T 1bor_A            3 EFQFLRCQQCQAEAKCPKLLPCLHTL-CSGCLEASG---MQCPICQAPWP   48 (56)
T ss_dssp             SCCCSSCSSSCSSCBCCSCSTTSCCS-BTTTCSSSS---SSCSSCCSSSS
T ss_pred             cccCCCceEeCCccCCeEEcCCCCcc-cHHHHccCC---CCCCcCCcEee
Confidence            34566899999999999999999999 999987743   48999999875

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.71  E-value=7.6e-09  Score=100.96  Aligned_cols=51  Identities=33%  Similarity=0.758  Sum_probs=45.8

Q ss_pred             CcccccccccCCceEEeCCCCccchHHHHHHHhc-cCcccccccccccceeEe
Q 010920          443 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKINQVIRL  494 (497)
Q Consensus       443 ~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i~~~~~~  494 (497)
                      ...|+||++...+++.+||||.| |..|+..|.. ....||+||.+|.....+
T Consensus       332 ~~~C~ICle~~~~pv~lpCGH~F-C~~Ci~~wl~~~~~~CP~CR~~i~~~~~i  383 (389)
T 2y1n_A          332 FQLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPI  383 (389)
T ss_dssp             SSBCTTTSSSBCCEEEETTCCEE-CHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred             CCCCCccCcCCCCeEEeCCCChh-hHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence            46999999999999999999999 9999999987 567999999999876554

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.69  E-value=2.2e-08  Score=78.92  Aligned_cols=50  Identities=10%  Similarity=-0.004  Sum_probs=45.4

Q ss_pred             CCCCcccccccccCCceEEeCCC-CccchHHHHHHHhccCcccccccccccc
Q 010920          440 DGSSSSCVICWEAPVEGACVPCG-HMAGCMSCLSEIKAKKGDCPVCRTKINQ  490 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~pC~-H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  490 (497)
                      ..+...|+||++.+.++|.+||| |.| |..|+.+|......||+||.++..
T Consensus        19 ~p~~~~CpI~~~~m~dPV~~~cG~htf-~r~cI~~~l~~~~~cP~~~~~l~~   69 (98)
T 1wgm_A           19 ACDEFLDPIMSTLMCDPVVLPSSRVTV-DRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             CCTTTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             CcHhcCCcCccccccCCeECCCCCeEE-CHHHHHHHHHhCCCCCCCCCCCCh
Confidence            45677999999999999999999 999 999999999877899999998853

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.69  E-value=1.2e-08  Score=80.72  Aligned_cols=50  Identities=12%  Similarity=0.049  Sum_probs=45.6

Q ss_pred             CCCCCcccccccccCCceEEeCCCCccchHHHHHHHhccCccccccccccc
Q 010920          439 DDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  489 (497)
Q Consensus       439 ~~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~  489 (497)
                      +..+...|+||++.+.++|.+||||.| |..|+.+|......||+||.++.
T Consensus        25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~   74 (100)
T 2kre_A           25 DAPDEFRDPLMDTLMTDPVRLPSGTIM-DRSIILRHLLNSPTDPFNRQTLT   74 (100)
T ss_dssp             SCSTTTBCTTTCSBCSSEEEETTTEEE-EHHHHHHHTTSCSBCSSSCCBCC
T ss_pred             cCcHhhCCcCccCcccCCeECCCCCEE-chHHHHHHHHcCCCCCCCCCCCC
Confidence            345678999999999999999999999 99999999987789999999885

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.68  E-value=3.6e-09  Score=102.84  Aligned_cols=53  Identities=28%  Similarity=0.835  Sum_probs=47.0

Q ss_pred             CCCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccceeEeee
Q 010920          440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT  496 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~  496 (497)
                      ..+...|+||++.+.+++++||||.++|..|+..+.    .||+||.+|...+++|.
T Consensus       292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~----~CP~CR~~i~~~~~i~~  344 (345)
T 3t6p_A          292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLR----KCPICRGIIKGTVRTFL  344 (345)
T ss_dssp             HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCS----BCTTTCCBCCEEEECC-
T ss_pred             CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcCC----cCCCCCCCccCeEEeec
Confidence            345679999999999999999999933999999885    89999999999999984

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.67  E-value=7.2e-09  Score=88.77  Aligned_cols=49  Identities=31%  Similarity=0.599  Sum_probs=43.3

Q ss_pred             CCCcccccccccCCceEEeCCCCccchHHHHHHHhccC-cccccccccccc
Q 010920          441 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKINQ  490 (497)
Q Consensus       441 ~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~-~~Cp~Cr~~i~~  490 (497)
                      .+...|+||++.+.+++.+||||.| |..|+..|.... ..||+||.++..
T Consensus        76 ~~~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~  125 (150)
T 1z6u_A           76 EQSFMCVCCQELVYQPVTTECFHNV-CKDCLQRSFKAQVFSCPACRHDLGQ  125 (150)
T ss_dssp             HHHTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             ccCCEeecCChhhcCCEEcCCCCch-hHHHHHHHHHhCCCcCCCCCccCCC
Confidence            3456899999999999999999999 999999999754 489999999864

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.67  E-value=9.5e-09  Score=84.47  Aligned_cols=50  Identities=30%  Similarity=0.563  Sum_probs=44.2

Q ss_pred             CCCCcccccccccCCceEEeCCCCccchHHHHHHHhccC-cccccccccccc
Q 010920          440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKINQ  490 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~-~~Cp~Cr~~i~~  490 (497)
                      ..+...|+||++.+.+++.+||||.| |..|+..|.... ..||+||.++..
T Consensus        15 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (118)
T 3hct_A           15 LESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE   65 (118)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCcCChhhcCeEECCcCChh-hHHHHHHHHhhCCCCCCCCCCCcCH
Confidence            45667999999999999999999999 999999998754 489999998854

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.64  E-value=4.4e-09  Score=86.14  Aligned_cols=49  Identities=35%  Similarity=0.761  Sum_probs=43.2

Q ss_pred             CCCcccccccccCCceEEeCCCCccchHHHHHHHhcc-Ccccccccccccc
Q 010920          441 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  490 (497)
Q Consensus       441 ~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~  490 (497)
                      .+...|+||++.+.+++.+||||.| |..|+.+|... ...||+||..+..
T Consensus        13 ~~~~~C~iC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           13 LSECQCGICMEILVEPVTLPCNHTL-CKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHHBCTTTCSBCSSCEECTTSCEE-CHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCCccCCcccCceeEcCCCCHH-hHHHHHHHHhHCcCCCCCCCcccCc
Confidence            3456999999999999999999999 99999999865 5789999998753

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.64  E-value=8.1e-09  Score=90.37  Aligned_cols=49  Identities=27%  Similarity=0.579  Sum_probs=43.4

Q ss_pred             CCCCcccccccccCCceEEe-CCCCccchHHHHHHHhcc-Cccccccccccc
Q 010920          440 DGSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAK-KGDCPVCRTKIN  489 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~-pC~H~~~C~~C~~~~~~~-~~~Cp~Cr~~i~  489 (497)
                      ..+...|+||++.+.+++.+ ||||.| |..|+..|... ...||+||.++.
T Consensus        51 ~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~  101 (165)
T 2ckl_B           51 LHSELMCPICLDMLKNTMTTKECLHRF-CADCIITALRSGNKECPTCRKKLV  101 (165)
T ss_dssp             CHHHHBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred             CCCCCCCcccChHhhCcCEeCCCCChh-HHHHHHHHHHhCcCCCCCCCCcCC
Confidence            34566999999999999887 999999 99999999975 678999999884

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.64  E-value=1.8e-08  Score=76.66  Aligned_cols=47  Identities=21%  Similarity=0.535  Sum_probs=38.3

Q ss_pred             CCcccccccccCCc--------------eEEe-CCCCccchHHHHHHHhccCccccccccccc
Q 010920          442 SSSSCVICWEAPVE--------------GACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  489 (497)
Q Consensus       442 ~~~~C~iC~~~~~~--------------~~~~-pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~  489 (497)
                      ++..|+||++.+.+              ++.+ +|+|.| +..|+.+|..++..||+||+++.
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR~~~~   75 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSF-HNCCMSLWVKQNNRCPLCQQDWV   75 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEE-EHHHHHHHTTTCCBCTTTCCBCC
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCcc-ChHHHHHHHHhCCCCCCcCCCcc
Confidence            34478888887754              4444 599999 99999999988889999999874

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.63  E-value=1.3e-08  Score=83.27  Aligned_cols=47  Identities=26%  Similarity=0.598  Sum_probs=38.6

Q ss_pred             CcccccccccCCce------------------EEeCCCCccchHHHHHHHh-----ccCcccccccccccc
Q 010920          443 SSSCVICWEAPVEG------------------ACVPCGHMAGCMSCLSEIK-----AKKGDCPVCRTKINQ  490 (497)
Q Consensus       443 ~~~C~iC~~~~~~~------------------~~~pC~H~~~C~~C~~~~~-----~~~~~Cp~Cr~~i~~  490 (497)
                      +..|+||++.+...                  .++||+|.| |..|+..|.     ..+..||+||..+..
T Consensus        25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~F-h~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAF-HLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEE-CHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCcCccCChhhcCcccccccccccccCcccceecCCCCCcc-cHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            45899999987543                  378999999 999999998     345789999988743

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.60  E-value=1.9e-08  Score=85.18  Aligned_cols=48  Identities=23%  Similarity=0.473  Sum_probs=42.8

Q ss_pred             CCCCcccccccccCCceEEeCCCCccchHHHHHHHhccC-cccccccccc
Q 010920          440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKI  488 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~-~~Cp~Cr~~i  488 (497)
                      ..+...|+||++.+.+++.++|||.| |..|+.+|.... ..||+||.++
T Consensus        28 l~~~~~C~IC~~~~~~pv~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~   76 (141)
T 3knv_A           28 LEAKYLCSACRNVLRRPFQAQCGHRY-CSFCLASILSSGPQNCAACVHEG   76 (141)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHGGGSCEECHHHHHTT
T ss_pred             CCcCcCCCCCChhhcCcEECCCCCcc-CHHHHHHHHhcCCCCCCCCCCcc
Confidence            45677999999999999999999999 999999998754 4899999975

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.60  E-value=1.1e-08  Score=83.22  Aligned_cols=48  Identities=29%  Similarity=0.747  Sum_probs=42.1

Q ss_pred             CCcccccccccCCceEEeCCCCccchHHHHHHHhccC---cccccccccccc
Q 010920          442 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK---GDCPVCRTKINQ  490 (497)
Q Consensus       442 ~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~---~~Cp~Cr~~i~~  490 (497)
                      +...|+||++.+.+++.+||||.| |..|+..|....   ..||+||.++..
T Consensus        20 ~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (112)
T 1jm7_A           20 KILECPICLELIKEPVSTKCDHIF-CKFCMLKLLNQKKGPSQCPLCKNDITK   70 (112)
T ss_dssp             HHTSCSSSCCCCSSCCBCTTSCCC-CSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             CCCCCcccChhhcCeEECCCCCHH-HHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence            456899999999999999999999 999999998754   489999998853

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.59  E-value=1.3e-08  Score=83.41  Aligned_cols=49  Identities=27%  Similarity=0.495  Sum_probs=43.7

Q ss_pred             CCCcccccccccCCceEEeCCCCccchHHHHHHHhcc-Ccccccccccccc
Q 010920          441 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  490 (497)
Q Consensus       441 ~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~  490 (497)
                      .+...|+||++.+.+++.+||||.| |..|+.+|... ...||+||.++..
T Consensus        21 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (116)
T 1rmd_A           21 VKSISCQICEHILADPVETSCKHLF-CRICILRCLKVMGSYCPSCRYPCFP   70 (116)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             cCCCCCCCCCcHhcCcEEcCCCCcc-cHHHHHHHHhHCcCcCCCCCCCCCH
Confidence            3456999999999999999999999 99999999975 6789999998854

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.55  E-value=2.7e-08  Score=83.60  Aligned_cols=48  Identities=38%  Similarity=0.840  Sum_probs=42.8

Q ss_pred             CCcccccccccCCce-------EEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920          442 SSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  490 (497)
Q Consensus       442 ~~~~C~iC~~~~~~~-------~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  490 (497)
                      +...|+||++.+.+.       +.++|||.| |..|+.+|...+..||+||..+..
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~   60 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH   60 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEETTCCEE-EHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred             CCCCCcccChhhhCccccccCeEecCCCChh-hHHHHHHHHHhCCCCCCCCCcCcc
Confidence            456999999998776       889999999 999999999888899999999853

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.52  E-value=3.3e-08  Score=83.10  Aligned_cols=54  Identities=35%  Similarity=0.791  Sum_probs=46.5

Q ss_pred             CCCcccccccccCCce-------EEeCCCCccchHHHHHHHhccCccccccccccc--ceeEee
Q 010920          441 GSSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRLY  495 (497)
Q Consensus       441 ~~~~~C~iC~~~~~~~-------~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~--~~~~~~  495 (497)
                      .+...|+||++.+.+.       +.++|||.| |..|+.+|...+..||+||.++.  ..+++|
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~  132 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY  132 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEE-EHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChh-hHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence            3456899999987764       888999999 99999999988889999999984  567777

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.42  E-value=1.4e-07  Score=75.23  Aligned_cols=46  Identities=22%  Similarity=0.460  Sum_probs=39.0

Q ss_pred             CCcccccccccCCc------------------eEEeCCCCccchHHHHHHHhccCcccccccccc
Q 010920          442 SSSSCVICWEAPVE------------------GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI  488 (497)
Q Consensus       442 ~~~~C~iC~~~~~~------------------~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i  488 (497)
                      +...|.||++.+.+                  ++.+||+|.| +..|+..|...+..||+||+.+
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~Cr~~~   99 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQVCPLDNREW   99 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEE-EHHHHHHHHTTCSBCSSSCSBC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEE-CHHHHHHHHHcCCcCcCCCCcc
Confidence            34579999887653                  4667999999 9999999998888999999975

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.40  E-value=3.1e-08  Score=81.23  Aligned_cols=46  Identities=30%  Similarity=0.672  Sum_probs=41.3

Q ss_pred             CCCcccccccccCCceEEe-CCCCccchHHHHHHHhccCccccccccccc
Q 010920          441 GSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  489 (497)
Q Consensus       441 ~~~~~C~iC~~~~~~~~~~-pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~  489 (497)
                      .+...|+||++.+.+++.+ ||||.| |..|+..|..  ..||+||.++.
T Consensus        20 ~~~~~C~IC~~~~~~pv~~~~CgH~f-C~~Ci~~~~~--~~CP~Cr~~~~   66 (117)
T 1jm7_B           20 EKLLRCSRCTNILREPVCLGGCEHIF-CSNCVSDCIG--TGCPVCYTPAW   66 (117)
T ss_dssp             HHTTSCSSSCSCCSSCBCCCSSSCCB-CTTTGGGGTT--TBCSSSCCBCS
T ss_pred             hhCCCCCCCChHhhCccEeCCCCCHH-HHHHHHHHhc--CCCcCCCCcCc
Confidence            4567999999999999999 999999 9999999975  58999999884

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.40  E-value=1.2e-07  Score=74.18  Aligned_cols=53  Identities=23%  Similarity=0.399  Sum_probs=43.1

Q ss_pred             CCCcccccccccCCceEEeC-CCCccchHHHHHHHhccC------ccccc--cccc-c--cceeEe
Q 010920          441 GSSSSCVICWEAPVEGACVP-CGHMAGCMSCLSEIKAKK------GDCPV--CRTK-I--NQVIRL  494 (497)
Q Consensus       441 ~~~~~C~iC~~~~~~~~~~p-C~H~~~C~~C~~~~~~~~------~~Cp~--Cr~~-i--~~~~~~  494 (497)
                      .+...|+||++.+.++|.+| |||.| |..|+..|....      ..||+  |+.. +  ...++.
T Consensus         5 ~~~~~CPI~~~~~~dPV~~~~cGh~f-~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn   69 (94)
T 2yu4_A            5 SSGFTCPITKEEMKKPVKNKVCGHTY-EEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQD   69 (94)
T ss_dssp             SSCCBCTTTCSBCSSEEEESSSCCEE-EHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEEC
T ss_pred             CcEeECcCcCchhcCCEEcCCCCCee-cHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCC
Confidence            35569999999999999996 99999 999999999743      58999  9854 3  444443

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.35  E-value=1.9e-07  Score=81.50  Aligned_cols=50  Identities=20%  Similarity=0.082  Sum_probs=43.9

Q ss_pred             CCCCcccccccccCCceEEeCCCCccchHHHHHHHhccC-cccccccccccc
Q 010920          440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKINQ  490 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~-~~Cp~Cr~~i~~  490 (497)
                      ..+...|+||++.+.++|.+||||.| |..|+..|.... ..||+||.++..
T Consensus       103 ip~~f~CPI~~elm~DPV~~~~Ghtf-er~~I~~~l~~~~~tcP~t~~~l~~  153 (179)
T 2f42_A          103 IPDYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFDPVTRSPLTQ  153 (179)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CcHhhcccCccccCCCCeECCCCCEE-CHHHHHHHHHhCCCCCCCCcCCCCh
Confidence            45677999999999999999999999 999999999753 369999998853

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.35  E-value=1.9e-07  Score=82.00  Aligned_cols=50  Identities=30%  Similarity=0.563  Sum_probs=44.1

Q ss_pred             CCCCcccccccccCCceEEeCCCCccchHHHHHHHhccC-cccccccccccc
Q 010920          440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKINQ  490 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~-~~Cp~Cr~~i~~  490 (497)
                      ..+...|+||++.+.+++.+||||.| |..|+.+|...+ ..||+||.++..
T Consensus        15 ~~~~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (170)
T 3hcs_A           15 LESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE   65 (170)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCCChhhcCcEECCCCCHH-HHHHHHHHHHhCCCCCCCCccCcch
Confidence            45667999999999999999999999 999999998643 489999998854

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.34  E-value=2.4e-07  Score=88.37  Aligned_cols=49  Identities=18%  Similarity=0.075  Sum_probs=43.1

Q ss_pred             CCCCcccccccccCCceEEeCCCCccchHHHHHHHhccC-ccccccccccc
Q 010920          440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKIN  489 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~-~~Cp~Cr~~i~  489 (497)
                      ......|+||++.+.++|.+||||.| |..|+.+|.... ..||+||.++.
T Consensus       205 ~~~~~~c~i~~~~~~dPv~~~~gh~f-~~~~i~~~~~~~~~~cP~~~~~~~  254 (281)
T 2c2l_A          205 IPDYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFNPVTRSPLT  254 (281)
T ss_dssp             CCSTTBCTTTCSBCSSEEECSSCCEE-ETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred             CCcccCCcCcCCHhcCCeECCCCCEE-CHHHHHHHHHHCCCCCcCCCCCCc
Confidence            34566999999999999999999999 999999999753 34999999885

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.19  E-value=2.4e-07  Score=74.96  Aligned_cols=45  Identities=22%  Similarity=0.478  Sum_probs=0.4

Q ss_pred             CcccccccccCCc------------------eEEeCCCCccchHHHHHHHhccCcccccccccc
Q 010920          443 SSSCVICWEAPVE------------------GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI  488 (497)
Q Consensus       443 ~~~C~iC~~~~~~------------------~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i  488 (497)
                      ...|.||++.+.+                  ++..||+|.| +..|+..|...+..||+||+++
T Consensus        48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~F-H~~CI~~Wl~~~~~CP~Cr~~~  110 (117)
T 4a0k_B           48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQVCPLDNREW  110 (117)
T ss_dssp             C---------------------------------------------------------------
T ss_pred             CCcCeECChhhcCcChhhhcccccccccccccccCCcCceE-cHHHHHHHHHcCCcCCCCCCee
Confidence            4589999988754                  2335999999 9999999998888999999975

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.11  E-value=1.7e-06  Score=61.49  Aligned_cols=52  Identities=13%  Similarity=0.250  Sum_probs=44.8

Q ss_pred             CcccccccccCCceEEe-CCCCccchHHHHHHHhccCcccccccccc--cceeEee
Q 010920          443 SSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKI--NQVIRLY  495 (497)
Q Consensus       443 ~~~C~iC~~~~~~~~~~-pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i--~~~~~~~  495 (497)
                      ...|+||++...+++.. +|||.| |..|+++|....++||+++.++  ...++++
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~y-er~~I~~~l~~~~~cP~t~~~L~~~~Lip~~   57 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIF-EKSLLEQYVKDTGNDPITNEPLSIEEIVEIV   57 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEE-EHHHHHHHHHHHSBCTTTCCBCCGGGCEECC
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEE-cHHHHHHHHHhCCCCcCCcCCCChhhcEECc
Confidence            45899999999999999 999999 9999999998777899999988  4455554

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.98  E-value=3.3e-06  Score=63.50  Aligned_cols=49  Identities=22%  Similarity=0.493  Sum_probs=39.3

Q ss_pred             CCCcccccccccC--CceEEeCCC-----CccchHHHHHHHhccC--cccccccccccc
Q 010920          441 GSSSSCVICWEAP--VEGACVPCG-----HMAGCMSCLSEIKAKK--GDCPVCRTKINQ  490 (497)
Q Consensus       441 ~~~~~C~iC~~~~--~~~~~~pC~-----H~~~C~~C~~~~~~~~--~~Cp~Cr~~i~~  490 (497)
                      .+...|.||++..  .+.+.+||.     |.| ...|+.+|...+  ..||+||..+.-
T Consensus        13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~f-H~~Cl~~Wl~~~~~~~CplCr~~~~~   70 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPLITPCHCTGSLHFV-HQACLQQWIKSSDTRCCELCKYEFIM   70 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCE-ETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred             CCCCCCeEcCccccCCCeeEeccccCCcCCee-CHHHHHHHHhhCCCCCCCCCCCeeec
Confidence            3456899999765  345678996     999 999999998754  489999998743

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=97.92  E-value=5.7e-06  Score=75.70  Aligned_cols=48  Identities=17%  Similarity=0.302  Sum_probs=41.6

Q ss_pred             CCCcccccccccCCceEEe-CCCCccchHHHHHHHhccC--ccccc--cccccc
Q 010920          441 GSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKK--GDCPV--CRTKIN  489 (497)
Q Consensus       441 ~~~~~C~iC~~~~~~~~~~-pC~H~~~C~~C~~~~~~~~--~~Cp~--Cr~~i~  489 (497)
                      .....|+||++.+.++|.. .|||.| |..|+.+|....  ..||+  ||..+.
T Consensus       179 ~~el~CPIcl~~f~DPVts~~CGHsF-cR~cI~~~~~~~~~~~CPvtGCr~~l~  231 (267)
T 3htk_C          179 KIELTCPITCKPYEAPLISRKCNHVF-DRDGIQNYLQGYTTRDCPQAACSQVVS  231 (267)
T ss_dssp             BCCSBCTTTSSBCSSEEEESSSCCEE-EHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred             ceeeECcCccCcccCCeeeCCCCCcc-cHHHHHHHHHhCCCCCCCcccccCcCc
Confidence            4566999999999999975 999999 999999998743  67999  998773

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.80  E-value=6.9e-06  Score=64.19  Aligned_cols=45  Identities=24%  Similarity=0.549  Sum_probs=35.5

Q ss_pred             CCcccccccccCCceEE---eCCCCccchHHHHHHHhcc--------Cccccc--cccc
Q 010920          442 SSSSCVICWEAPVEGAC---VPCGHMAGCMSCLSEIKAK--------KGDCPV--CRTK  487 (497)
Q Consensus       442 ~~~~C~iC~~~~~~~~~---~pC~H~~~C~~C~~~~~~~--------~~~Cp~--Cr~~  487 (497)
                      +...|+||++.+.....   .+|||.| |..|+......        ...||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~F-C~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIF-CTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEE-EHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcc-cHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            34589999998766433   3899999 99999888752        258999  9987

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.65  E-value=4.5e-05  Score=58.31  Aligned_cols=49  Identities=22%  Similarity=0.529  Sum_probs=37.4

Q ss_pred             ccccccccCCc-eEEeCCCCccchHHHHHHHhc-cCcccccccccccceeEe
Q 010920          445 SCVICWEAPVE-GACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKINQVIRL  494 (497)
Q Consensus       445 ~C~iC~~~~~~-~~~~pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i~~~~~~  494 (497)
                      -|.+|--.... ...+||.|.| |..|+..+.. ..+.||.|+.+|.....+
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvF-CydCa~~~~~~~~k~Cp~C~~~V~rVe~~   53 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVF-CYDCAILHEKKGDKMCPGCSDPVQRIEQC   53 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEE-EHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred             ecCccCCCeEEEeeeccccccH-HHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence            46677665554 3467999999 9999999864 447899999999776543

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.34  E-value=0.00023  Score=52.20  Aligned_cols=50  Identities=22%  Similarity=0.612  Sum_probs=40.2

Q ss_pred             CCCCcccccccccCCce-EEeCCCCccchHHHHHHHhccC--cccccccccccc
Q 010920          440 DGSSSSCVICWEAPVEG-ACVPCGHMAGCMSCLSEIKAKK--GDCPVCRTKINQ  490 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~-~~~pC~H~~~C~~C~~~~~~~~--~~Cp~Cr~~i~~  490 (497)
                      .+....|.||++.+..- ....|+|.| -..|+.+|.+++  ..||+||.....
T Consensus        12 ~~~i~~C~IC~~~i~~g~~C~~C~h~f-H~~Ci~kWl~~~~~~~CP~Cr~~w~~   64 (74)
T 2ct0_A           12 PDAVKICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWPH   64 (74)
T ss_dssp             SSSSCBCSSSCCBCSSSEECSSSCCEE-CHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred             cCCCCcCcchhhHcccCCccCCCCchh-hHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence            34556999999987643 334899999 999999999866  789999988754

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=97.10  E-value=0.00027  Score=49.67  Aligned_cols=49  Identities=29%  Similarity=0.480  Sum_probs=37.9

Q ss_pred             CCCCcccccccccCCceEEeCCCC-----ccchHHHHHHHhcc--Cccccccccccc
Q 010920          440 DGSSSSCVICWEAPVEGACVPCGH-----MAGCMSCLSEIKAK--KGDCPVCRTKIN  489 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~pC~H-----~~~C~~C~~~~~~~--~~~Cp~Cr~~i~  489 (497)
                      .++...|.||++...+....||.+     .| -..|+.+|...  +..||+|+..+.
T Consensus         3 ~~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~-H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            3 DEDVPVCWICNEELGNERFRACGCTGELENV-HRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             TCSCCEETTTTEECSCCCCCSCCCSSGGGSC-CHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCEeEEeecCCCCceecCcCCCCchhhh-HHHHHHHHHHhCCCCccCCCCCeee
Confidence            345569999998766666789764     55 99999999873  578999998653

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=96.91  E-value=0.00019  Score=67.89  Aligned_cols=51  Identities=27%  Similarity=0.676  Sum_probs=39.3

Q ss_pred             CCCCcccccccccCCc------eEE--eCCCCccchHHHHHHHhccC-----------cccccccccccce
Q 010920          440 DGSSSSCVICWEAPVE------GAC--VPCGHMAGCMSCLSEIKAKK-----------GDCPVCRTKINQV  491 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~------~~~--~pC~H~~~C~~C~~~~~~~~-----------~~Cp~Cr~~i~~~  491 (497)
                      .+...+|.||++...+      .+.  .+|+|.| ...|..+|.+..           +.||+||.+|...
T Consensus       305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~F-H~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s  374 (381)
T 3k1l_B          305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKC-HAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS  374 (381)
T ss_dssp             CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCB-CSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred             ccCCccCcccceeecCCCCCccccccCCccCCcc-chHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence            3466799999986654      222  3799999 999999998631           6799999998653

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=89.95  E-value=0.19  Score=36.28  Aligned_cols=34  Identities=29%  Similarity=0.600  Sum_probs=28.9

Q ss_pred             CCcccccccccCCceEEeCCC----CccchHHHHHHHhc
Q 010920          442 SSSSCVICWEAPVEGACVPCG----HMAGCMSCLSEIKA  476 (497)
Q Consensus       442 ~~~~C~iC~~~~~~~~~~pC~----H~~~C~~C~~~~~~  476 (497)
                      ....|.+|.++..+.-|+.|-    |.| |..|.....+
T Consensus        14 a~l~CtlC~erLEdtHFVQCPsv~~HkF-CFpCsr~sIk   51 (93)
T 2cs3_A           14 GPLCCTICHERLEDTHFVQCPSVPSHKF-CFPCSRESIK   51 (93)
T ss_dssp             CSCCCSSSCSCCSSTTSEECSSCSSCEE-CHHHHHHHHH
T ss_pred             CeeEeecchhhhccCceeeCCCccCCee-eccccHHHHH
Confidence            345999999999999998884    999 9999887765

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=89.41  E-value=0.29  Score=44.62  Aligned_cols=47  Identities=23%  Similarity=0.639  Sum_probs=36.9

Q ss_pred             CcccccccccCCceE-EeCCCCccchHHHHHHHhccC--cccccccccccc
Q 010920          443 SSSCVICWEAPVEGA-CVPCGHMAGCMSCLSEIKAKK--GDCPVCRTKINQ  490 (497)
Q Consensus       443 ~~~C~iC~~~~~~~~-~~pC~H~~~C~~C~~~~~~~~--~~Cp~Cr~~i~~  490 (497)
                      ...|.+|.+-..... .-.|+|.+ -..|..+|.+..  ..||.|+.+...
T Consensus       180 i~~C~iC~~iv~~g~~C~~C~~~~-H~~C~~~~~~~~~~~~CP~C~~~W~~  229 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWPH  229 (238)
T ss_dssp             CCBCTTTCSBCSSCEECSSSCCEE-CHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred             CCcCcchhhHHhCCcccCccChHH-HHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence            559999999776543 33499999 999999998643  589999987654

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=88.71  E-value=0.19  Score=39.07  Aligned_cols=30  Identities=23%  Similarity=0.533  Sum_probs=24.4

Q ss_pred             Cccccccccc-CCceEE--eCCCCccchHHHHHH
Q 010920          443 SSSCVICWEA-PVEGAC--VPCGHMAGCMSCLSE  473 (497)
Q Consensus       443 ~~~C~iC~~~-~~~~~~--~pC~H~~~C~~C~~~  473 (497)
                      +..|.||.+. +..++.  ++|+|.| |..|...
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~-C~~Cl~~   35 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSY-CDECLKA   35 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEE-CHHHHHH
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHH-hHHHCHH
Confidence            4589999975 445554  8999999 9999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	497
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-04
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	1e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-04
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	1e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.002
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	3e-07
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	1e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.004
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-05
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	4e-05
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	6e-05
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	1e-04
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	4e-04
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	0.002

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 7e-10
 Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 10/102 (9%)

Query: 52  TPLIVACMDSGLINVAKTLIELGANINA---------YRPAKRGLEPTVRLLLSCGANAL 102
           TPL VA    G + + K L++ GA+ N          +  A+ G     + LL   A   
Sbjct: 2   TPLHVASF-MGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 103 VRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGP 144
            +  D  T L  A   GH N+V+ +  +           + P
Sbjct: 61  AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP 102

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 4e-09
 Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 8/116 (6%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELG----AN 76
           L+     G V     L   G  ++   + G TPL VA     +  V   L          
Sbjct: 268 LHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT 327

Query: 77  INAYRP----AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 128
              Y P    A++G    V LLL  GA+    + D  T L +A+  G+I+V   ++
Sbjct: 328 KLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK 383

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 2e-06
 Identities = 29/148 (19%), Positives = 44/148 (29%), Gaps = 43/148 (29%)

Query: 25  VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP-- 82
             AG  +  + L    A +    K+ +TPL  A    G  N+ K L+E  AN N      
Sbjct: 41  ARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAAR-IGHTNMVKLLLENNANPNLATTAG 99

Query: 83  ----------------------------------------AKRGLEPTVRLLLSCGANAL 102
                                                   AK G      LLL   A+  
Sbjct: 100 HTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN 159

Query: 103 VRNDDCHTALGVARIKGHINVVRAIESH 130
               +  T L VA    ++++V+ +   
Sbjct: 160 AAGKNGLTPLHVAVHHNNLDIVKLLLPR 187

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 8e-06
 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 10/119 (8%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+     G  + +  L S+ A+    +K G TPL +     G + VA  LI+ G  ++A 
Sbjct: 235 LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQ-EGHVPVADVLIKHGVMVDAT 293

Query: 81  RPAKR---------GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
                         G    V+ LL   A+   +    ++ L  A  +GH ++V  +  +
Sbjct: 294 TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN 352

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 4e-04
 Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 10/158 (6%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
           L+  V   ++D ++ L  +G S       G TPL +       + VA++L++ G + NA 
Sbjct: 169 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHI-AAKQNQVEVARSLLQYGGSANAE 227

Query: 81  RP---------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI 131
                      A+ G    V LLLS  AN  + N    T L +   +GH+ V   +  H 
Sbjct: 228 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG 287

Query: 132 CYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA 169
                  R  Y P  + +    +   K  +       A
Sbjct: 288 VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA 325

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (126), Expect = 1e-09
 Identities = 14/56 (25%), Positives = 22/56 (39%)

Query: 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 495
             +   C IC E   +    PCGH+       S  +++   CP CR +I     + 
Sbjct: 20  GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 75

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 55.3 bits (132), Expect = 6e-09
 Identities = 15/110 (13%), Positives = 34/110 (30%), Gaps = 15/110 (13%)

Query: 30  VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEP 89
           +D +  L +    ++ +  E      +A   +G ++V   L EL                
Sbjct: 106 LDTLCLLLTSDEIVKVIQAENYQAFRLAAE-NGHLHVLNRLCELAPTEIMAMIQAENYHA 164

Query: 90  -----------TVRLLLSCGANA---LVRNDDCHTALGVARIKGHINVVR 125
                       +  L          +++ ++ +     A  +GH NV+ 
Sbjct: 165 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVIN 214

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 44.9 bits (105), Expect = 1e-05
 Identities = 16/125 (12%), Positives = 37/125 (29%), Gaps = 22/125 (17%)

Query: 6   NSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLIN 65
            +++         E + Q +        R  +   +       + +    VA + +G  +
Sbjct: 46  EAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAI-TGCSS 104

Query: 66  VAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 125
              T                     + LLL+      V   + + A  +A   GH++V+ 
Sbjct: 105 ALDT---------------------LCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLN 143

Query: 126 AIESH 130
            +   
Sbjct: 144 RLCEL 148

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 42.6 bits (99), Expect = 6e-05
 Identities = 18/143 (12%), Positives = 34/143 (23%), Gaps = 37/143 (25%)

Query: 28  GDVDAIRALRSQGASLEWMDKE--GKTPLIVACMDSGLINVAKTLIELGANINAYR---- 81
           G +  +  L     +      +        +A  +  L  +   L EL            
Sbjct: 137 GHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVL-NRLCELAPTEATAMIQAE 195

Query: 82  --------PAKRGLEPTVRLLLSCGAN----------------------ALVRNDDCHTA 111
                      RG    +  LL C                          + R  + H A
Sbjct: 196 NYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDA 255

Query: 112 LGVARIKGHINVVRAIESHICYF 134
             ++   G  ++V   E    ++
Sbjct: 256 FKLSNPDGVFDLVTKSECLQGFY 278

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 7/86 (8%)

Query: 47  DKEGKTPLIVACMDS--GLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVR 104
            KE      ++  D    L+  ++ L       N  R     L   +R LLS      + 
Sbjct: 249 LKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALA 308

Query: 105 ND-----DCHTALGVARIKGHINVVR 125
                  D +  L +A   G+     
Sbjct: 309 PTATIPGDANELLRLALRLGNQGACA 334

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 49.6 bits (118), Expect = 1e-08
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 443 SSSCVICWEAPVEGA-CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIR 493
           +  C IC E P   +  +PC H   C  C++    +   CP+C+  +  V+ 
Sbjct: 5   AERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVH 55

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 3e-08
 Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 11/116 (9%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
           L+        +    L   GA+ +  D    T +       G + +   L+   A+ N  
Sbjct: 107 LHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHR-AAAKGNLKMIHILLYYKASTNIQ 165

Query: 80  --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
                   +           +LL+S GA+  + N +  T L VA+  G   +++ +
Sbjct: 166 DTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRM 220

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 9/120 (7%)

Query: 20  LLYQWVIAGDVDAIR-ALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANIN 78
           ++     +G ++ ++ ++ +  +     D++ +T L  AC       V   L       +
Sbjct: 6   MVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 65

Query: 79  AYRPAKRGL--------EPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
                   L        +  V+ LL  GA     N +  T L  A  K    +   +   
Sbjct: 66  KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 125

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 5e-04
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 28  GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIE 72
             V+  + L SQGAS+   +KE KTPL VA    GL  + K ++E
Sbjct: 180 ERVEEAKLLVSQGASIYIENKEEKTPLQVAK--GGLGLILKRMVE 222

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 1e-07
 Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 15/101 (14%)

Query: 44  EWMDKEGKTPLIVACMDSGLINVAKTLI-ELGANINA-------------YRPAKRGLEP 89
           E + K G T L+ A    G + V K L+ E+GA++NA                    +E 
Sbjct: 142 ERLRKGGATALMDAAE-KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA 200

Query: 90  TVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
              LLL  GA+  VR +   T L +A  K H+ +V+ +   
Sbjct: 201 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 241

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 5e-07
 Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 14/124 (11%)

Query: 21  LYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIV---ACMDSGLINVAKTLIELGAN 76
           L      G V+ ++ L  + GA +   D  G+  LI    +  DS +  +   L++ GA+
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 77  INA----------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRA 126
           +N               K+ L    RLL          + D  TAL +A       +   
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL 271

Query: 127 IESH 130
           +   
Sbjct: 272 LCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 1e-06
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 21  LYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
           L   V    +  ++ L  Q    +   D +GKT L++A     L  +A+ L + GA+ + 
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE-LKLKKIAELLCKRGASTDC 281

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 9/76 (11%)

Query: 34  RALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA---------YRPAK 84
             L   GA +    + GKTPLI+A     L  V + L +    IN              +
Sbjct: 203 HLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE 262

Query: 85  RGLEPTVRLLLSCGAN 100
             L+    LL   GA+
Sbjct: 263 LKLKKIAELLCKRGAS 278

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 39/282 (13%), Positives = 77/282 (27%), Gaps = 40/282 (14%)

Query: 49  EGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDC 108
           E    LI A   +  +++ + L+E GAN+N                           +  
Sbjct: 4   EDNHLLIKAVQ-NEDVDLVQQLLEGGANVNF-----------------------QEEEGG 39

Query: 109 HTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGT 168
            T L  A      ++V   E  + +    +      +    LA    S K+  + +  G 
Sbjct: 40  WTPLHNAVQMSREDIV---ELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA 96

Query: 169 ANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFAS 228
                          +    + +A+  L+K   +     +         +        A+
Sbjct: 97  DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156

Query: 229 ANEGDKHQLQWL-----------DNACRGTSQFLPSANNHQSAEAINANGWGNSANAESH 277
              G    L+ L           DN  R        +++    EAI      + A+    
Sbjct: 157 EK-GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR 215

Query: 278 NGWGAAARTEASCSGWMDEPKKEDYKGWGDEQAKEDYNGWGA 319
              G      A     +   ++   +   +     D +G  A
Sbjct: 216 GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDT-DSDGKTA 256

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (107), Expect = 3e-07
 Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 4/43 (9%)

Query: 446 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 488
           C  C         +PC H   C  CL     +   CP+C+   
Sbjct: 9   CQQCQAEAKCPKLLPCLHTL-CSGCLEASGMQ---CPICQAPW 47

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 437 VKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSE-IKAKKGDCPVCRTKIN 489
                 S SC IC     +     C H+  C  C+   +K     CP CR    
Sbjct: 17  PAHFVKSISCQICEHILADPVETSCKHLF-CRICILRCLKVMGSYCPSCRYPCF 69

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 25/90 (27%)

Query: 39  QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCG 98
           +G++ +  D++GKTP+++A    G I V   LI+ GA++ A                   
Sbjct: 210 KGSNKDKQDEDGKTPIMLAAQ-EGRIEVVMYLIQQGASVEA------------------- 249

Query: 99  ANALVRNDDCHTALGVARIKGHINVVRAIE 128
                 +   HTA  +A+   H N+V   +
Sbjct: 250 -----VDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 21  LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIE 72
           +      G ++ +  L  QGAS+E +D    T   +A   +   N+      
Sbjct: 225 IMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQA-NNHHNIVDIFDR 275

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 17/132 (12%)

Query: 16  SKDELLYQWVIAGDVDAIRALRSQGASL------EWMDKEGKTPLIVACM--DSGLINVA 67
           +K   L + V   D+  +    + G  L          +  +T L +A    D   +++ 
Sbjct: 5   AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIV 64

Query: 68  KTLIELGANIN---------AYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIK 118
             L++   N++          +          ++LLL   A+  + N+   T L +A+  
Sbjct: 65  DFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL 124

Query: 119 GHINVVRAIESH 130
            H +    +   
Sbjct: 125 KHEHCEELLTQA 136

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.6 bits (109), Expect = 3e-06
 Identities = 20/142 (14%), Positives = 43/142 (30%), Gaps = 10/142 (7%)

Query: 7   SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINV 66
            +N ++Q+   +  L + +     +   +L +  ++                 DS L  V
Sbjct: 29  VVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEV 88

Query: 67  AKTLIELGANINA----------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 116
                    N+N           +          V+ L+  G+N L  ++   + L  A 
Sbjct: 89  NDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAV 148

Query: 117 IKGHINVVRAIESHICYFCGWL 138
              +       E+ + Y    L
Sbjct: 149 KSVNNYDSGTFEALLDYLYPCL 170

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 13/98 (13%), Positives = 30/98 (30%), Gaps = 11/98 (11%)

Query: 29  DVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIE--LGANINA------- 79
           D+     ++ Q   ++    E ++       +     +    ++  +   +NA       
Sbjct: 202 DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDT 261

Query: 80  --YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 115
                A+ G    V  LL  GA+  + N      +   
Sbjct: 262 CLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 299

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.5 bits (106), Expect = 5e-06
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 1/75 (1%)

Query: 1   MGQSLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD 60
           + +   +     +       L+  V A     +  L   GA        G+TPL  A + 
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALL- 234

Query: 61  SGLINVAKTLIELGA 75
                +A+ L   GA
Sbjct: 235 RPNPILARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 20/120 (16%), Positives = 35/120 (29%), Gaps = 9/120 (7%)

Query: 20  LLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGL---------INVAKTL 70
                    + +           LE  + +G TPL VA +                    
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187

Query: 71  IELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
                    +   +      + LLL  GA+   R     T LG A ++ +  + R + +H
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (100), Expect = 3e-05
 Identities = 15/95 (15%), Positives = 28/95 (29%), Gaps = 22/95 (23%)

Query: 43  LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANAL 102
             ++ ++G T L +A +          L+   A                           
Sbjct: 2   FGYVTEDGDTALHLAVI-HQHEPFLDFLLGFSAGHEYLD--------------------- 39

Query: 103 VRNDDCHTALGVARIKGHINVVRAIESHICYFCGW 137
           ++ND   TAL +A I G  + V  + +        
Sbjct: 40  LQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVA 74

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 12/106 (11%)

Query: 32  AIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP--------- 82
           A + L S   +     K G T L V     G   V K LI+   ++N             
Sbjct: 181 ARQWLNSGHINDVRHAKSGGTALHV-AAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAA 239

Query: 83  AKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR--IKGHINVVRA 126
           A  G E   R+L+    +    N    TA  VA   I G++  ++ 
Sbjct: 240 AHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQK 285

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.2 bits (100), Expect = 4e-05
 Identities = 23/137 (16%), Positives = 46/137 (33%), Gaps = 28/137 (20%)

Query: 8   MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVA 67
           M     +Q ++E L +W+ +        ++ +   +++   +     + AC         
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKF---DDGAVFLAAC--------- 48

Query: 68  KTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
                             G    V  LL  GA+    N D  TAL  A I  ++++V+ +
Sbjct: 49  ----------------SSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFL 92

Query: 128 ESHICYFCGWLREFYGP 144
             +         E + P
Sbjct: 93  VENGANINQPDNEGWIP 109

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 8/129 (6%)

Query: 8   MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVA 67
            N + +       L           +  L +  A +   D  GKT L  A   +    V 
Sbjct: 81  TNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVN 140

Query: 68  KTLIELGANINAYRPAKRGLEP--------TVRLLLSCGANALVRNDDCHTALGVARIKG 119
             L+            +  L            + LL   AN  + +        VA  + 
Sbjct: 141 ILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERL 200

Query: 120 HINVVRAIE 128
           H ++VR ++
Sbjct: 201 HHDIVRLLD 209

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 83  AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 125
           + RGL P VR L+  GA++ ++N    T L VAR +  I+++R
Sbjct: 185 SGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (94), Expect = 4e-05
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 445 SCVICWEAPVEGACVPCGHM--AGCMSCLSEIKAKKGDCPVCRTKINQ 490
            C IC E   E     C H+    CM  L   K     CP+C+  I +
Sbjct: 23  ECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 6e-05
 Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 4/50 (8%)

Query: 445 SCVICWEAPVEGACV----PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 490
            C +C E             CG+             + G CP CR    +
Sbjct: 2   ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 51

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 7/54 (12%)

Query: 439 DDGSSSSCVICWEAPVEGA----CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 488
           DDG    C +C     +G        CGH      C+         CP+CR  +
Sbjct: 3   DDGVE--CAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGSHSTCPLCRLTV 53

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.3 bits (83), Expect = 4e-04
 Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 2/53 (3%)

Query: 446 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI--NQVIRLYT 496
           C I  + P      P        S L +     G+ P+    +   +++ +  
Sbjct: 3   CAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVP 55

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (79), Expect = 0.002
 Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 7/53 (13%)

Query: 444 SSCVICWEAPVEGACV-----PCGHMAGCMSCLSEI-KAKKGDCPVCRTKINQ 490
             C  C         +      CGH   C SC+  +     G+CP C T + +
Sbjct: 4   QGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVRGAGNCPECGTPLRK 55

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	497
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.96
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.94
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.94
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.93
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.92
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.92
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.91
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.9
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.87
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.87
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.87
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.87
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.85
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.83
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.81
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.81
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.8
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.78
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.78
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.77
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.72
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.71
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.12
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.05
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	98.95
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.94
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.94
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.9
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.86
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.8
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.71
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.71
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.69
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.51
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.49
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.47
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.41
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.23
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	97.46
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	89.71

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2e-29  Score=237.11  Aligned_cols=186  Identities=18%  Similarity=0.148  Sum_probs=158.7

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc--------
Q 010920           14 RQSKDELLYQWVIAGDVDAIRALRSQGAS---LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP--------   82 (497)
Q Consensus        14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~---~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~--------   82 (497)
                      +.+|.||||+||+.|+.+++++||++|++   ++.+|..|.||||+|+..| +.+++++|+++|++++..+.        
T Consensus         6 ~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g-~~~iv~~Ll~~ga~i~~~d~~g~tpL~~   84 (255)
T d1oy3d_           6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG-EASTVEKLYAAGAGVLVAERGGHTALHL   84 (255)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHT-CHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhc-ccccccccccccccccccccccchhhhh
Confidence            56999999999999999999999999987   6778899999999999985 59999999999999998765        


Q ss_pred             -ccCCCHHHHHHHHhCC-----------------------------------------------CCCcccCCCCCCHHHH
Q 010920           83 -AKRGLEPTVRLLLSCG-----------------------------------------------ANALVRNDDCHTALGV  114 (497)
Q Consensus        83 -~~~g~~~~v~~Ll~~g-----------------------------------------------a~~~~~~~~g~T~Lh~  114 (497)
                       +..++.+++++|++.+                                               .+++.+|..|.||||+
T Consensus        85 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~  164 (255)
T d1oy3d_          85 ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHV  164 (255)
T ss_dssp             HTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHH
T ss_pred             hhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccc
Confidence             6778888888886532                                               1234567789999999


Q ss_pred             HHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHH
Q 010920          115 ARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVI  194 (497)
Q Consensus       115 A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~  194 (497)
                      |+..++.+++++|++.+++.+ ..++..|.|||| +|+..++.+++++|+++|++.                        
T Consensus       165 A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~TpL~-~A~~~~~~~~v~~Ll~~gadi------------------------  218 (255)
T d1oy3d_         165 AVIHKDAEMVRLLRDAGADLN-KPEPTCGRTPLH-LAVEAQAASVLELLLKAGADP------------------------  218 (255)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTT-CCCTTTCCCHHH-HHHHTTCHHHHHHHHHTTCCT------------------------
T ss_pred             cccccccccccchhccccccc-cccccccccccc-ccccccHHHHHHHHHHCCCCC------------------------
Confidence            999999999999999988876 245778999999 899999999999999888655                        


Q ss_pred             HHhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCCC
Q 010920          195 ALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGD  233 (497)
Q Consensus       195 ~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~  233 (497)
                             +..+..|.||||+|+..++...+++|.+++.+
T Consensus       219 -------n~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         219 -------TARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             -------TCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             -------CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence                   34456789999999999999999999987654

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.4e-29  Score=229.30  Aligned_cols=207  Identities=14%  Similarity=0.127  Sum_probs=185.5

Q ss_pred             CchHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccCC
Q 010920           17 KDELLYQWVIAGDVDAIRALRS-QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKRG   86 (497)
Q Consensus        17 G~T~Lh~Aa~~g~~~~v~~Ll~-~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~g   86 (497)
                      +.+.|+.+|+.|+.+.|+.+|. .+..++.+|.+|+||||+||..|+ .+++++|+..+.+......         ...+
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~-~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   81 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGH-TEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG   81 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTC-HHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhh-hccccccccccccccccccccccccccccccc
Confidence            5689999999999999977665 567899999999999999999955 9999999999887766544         7789


Q ss_pred             CHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhC
Q 010920           87 LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC  166 (497)
Q Consensus        87 ~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~  166 (497)
                      +.+++++|+++|++++.+|..|.||||+|+.+|+.+++++|+++|++++  .++.+|.|||| +|+..++.+++++|+.+
T Consensus        82 ~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~--~~~~~~~t~L~-~a~~~~~~~~~~~L~~~  158 (223)
T d1uoha_          82 RDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--AKDHYEATAMH-RAAAKGNLKMIHILLYY  158 (223)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHT
T ss_pred             ccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCccch-hhhhcCCcchhhhhccc
Confidence            9999999999999999999999999999999999999999999999999  89999999999 99999999999999999


Q ss_pred             CCCCCCCCcccccccccCCcCcCHHHHHHH--hhcCCCCCCCCCCChHHHHHHhCChhHHHHHH
Q 010920          167 GTANPSKPLRFELVIYPSLQDVQPRAVIAL--WKAKIDEPKFHQPDPSLTIYDQATKIRYKFAS  228 (497)
Q Consensus       167 ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~  228 (497)
                      +.+.+..+..+.++++.+...+....+..|  .+++++.+|.+|.|||++|. .++..+++++.
T Consensus       159 ~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll  221 (223)
T d1uoha_         159 KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMV  221 (223)
T ss_dssp             TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCC-TTHHHHHHHHH
T ss_pred             cceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-CCCHHHHhccc
Confidence            999998888899999999988877655444  78999999999999999884 57777777664

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8.8e-27  Score=233.78  Aligned_cols=216  Identities=20%  Similarity=0.094  Sum_probs=144.2

Q ss_pred             hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCC---------------
Q 010920           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANI---------------   77 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~---------------   77 (497)
                      +|..|.||||+|++.|+.++|++||++|++++.++..|.||||+|+..|. .+++++|+..+.+.               
T Consensus        29 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~-~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~  107 (408)
T d1n11a_          29 SNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGH-TNMVKLLLENNANPNLATTAGHTPLHIAA  107 (408)
T ss_dssp             SSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTC-HHHHHHHHHHTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHHhhhccccccccccchhhhhh
Confidence            45578888888888888888888888888888888788888888777643 66655555443332               


Q ss_pred             ---------------------------------------------------CCcCc---------ccCCCHHHHHHHHhC
Q 010920           78 ---------------------------------------------------NAYRP---------AKRGLEPTVRLLLSC   97 (497)
Q Consensus        78 ---------------------------------------------------~~~~~---------~~~g~~~~v~~Ll~~   97 (497)
                                                                         +..+.         +..|+.+++++|+.+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~  187 (408)
T d1n11a_         108 REGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR  187 (408)
T ss_dssp             HHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGG
T ss_pred             hhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhc
Confidence                                                               22111         456677777777777


Q ss_pred             CCCCcccC---------------------------------CCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCC
Q 010920           98 GANALVRN---------------------------------DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGP  144 (497)
Q Consensus        98 ga~~~~~~---------------------------------~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~  144 (497)
                      |++++..+                                 ..|.||||+|+..++.++++.++..+..++  ..+..|.
T Consensus       188 g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~--~~~~~g~  265 (408)
T d1n11a_         188 GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN--LGNKSGL  265 (408)
T ss_dssp             TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT--CCCTTCC
T ss_pred             CCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccc--cccCCCC
Confidence            76654332                                 334556666666677777777777777776  6777777


Q ss_pred             CHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHH--HHHhhcCCCCCCCCCCChHHHHHHhCChh
Q 010920          145 SFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAV--IALWKAKIDEPKFHQPDPSLTIYDQATKI  222 (497)
Q Consensus       145 T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~--~~l~~~~~~~~~~~g~~pl~~a~~~~~~~  222 (497)
                      |||+ .|+..++.+++++|+++|++.+.....+.++++.+...+....+  +...+.+++..+..|.||||+|+..++.+
T Consensus       266 ~~l~-~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~  344 (408)
T d1n11a_         266 TPLH-LVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD  344 (408)
T ss_dssp             CHHH-HHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             Chhh-hhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHH
Confidence            7777 77777777777777777777666655566666665554444332  22356667777777777777777777777


Q ss_pred             HHHHHHhCCC
Q 010920          223 RYKFASANEG  232 (497)
Q Consensus       223 ~~~~l~~~~~  232 (497)
                      .+++|.+.+.
T Consensus       345 iv~~Ll~~GA  354 (408)
T d1n11a_         345 IVTLLLKNGA  354 (408)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHCCC
Confidence            7777775543

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.7e-26  Score=212.90  Aligned_cols=170  Identities=20%  Similarity=0.186  Sum_probs=160.9

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------   82 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------   82 (497)
                      .+|..|+||||+||..|+.+++++|+..+......+..+.+++++|+.. ++.+++++|+++|++++..+.         
T Consensus        32 ~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A  110 (223)
T d1uoha_          32 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA-GRDEIVKALLGKGAQVNAVNQNGCTPLHYA  110 (223)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             CcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccc-cccchhHHHhccCceeEeeCCCCCchhhHH
Confidence            4566999999999999999999999999999988899999999999998 559999999999999988775         


Q ss_pred             ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010920           83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV  162 (497)
Q Consensus        83 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~  162 (497)
                      +..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+..+.+++  .+|.+|.|||| .|+..|+.+++++
T Consensus       111 ~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~--~~d~~g~TpL~-~Aa~~g~~~~v~~  187 (223)
T d1uoha_         111 ASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN--IQDTEGNTPLH-LACDEERVEEAKL  187 (223)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCTTCCCHHH-HHHHTTCHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceee--eccCCCCceec-cccccCcHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999  89999999999 9999999999999


Q ss_pred             hhhCCCCCCCCCcccccccccCC
Q 010920          163 VIPCGTANPSKPLRFELVIYPSL  185 (497)
Q Consensus       163 Ll~~ga~~~~~~~~~~~~l~~~~  185 (497)
                      |+++|++.+..+..+.++++.|.
T Consensus       188 LL~~Gad~~~~d~~g~tpl~~A~  210 (223)
T d1uoha_         188 LVSQGASIYIENKEEKTPLQVAK  210 (223)
T ss_dssp             HHHTTCCSCCCCTTSCCHHHHCC
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHH
Confidence            99999999999988999999885

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3.1e-26  Score=211.37  Aligned_cols=208  Identities=16%  Similarity=0.073  Sum_probs=173.6

Q ss_pred             chHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc------------cc
Q 010920           18 DELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP------------AK   84 (497)
Q Consensus        18 ~T~Lh~Aa~~g~~~~v~~Ll~~-ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~------------~~   84 (497)
                      .||||+||+.|+.++|+.||+. +.+++.+|.+|+||||+|+..|+ .+++++|+++|++++..+.            ..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~-~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQA-HEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTC-HHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCC-ccccchhhhhhcccccccccccccccccccccc
Confidence            4899999999999999988885 57899999999999999999855 9999999999999876543            56


Q ss_pred             CCCHHHHHHHHhCCCCC--cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010920           85 RGLEPTVRLLLSCGANA--LVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV  162 (497)
Q Consensus        85 ~g~~~~v~~Ll~~ga~~--~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~  162 (497)
                      .+..++++.++..+...  ...+..+.|+|+.++..++.+++++|+..|.+.+  .++..|.|||| +|+..++.+++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~--~~~~~g~t~l~-~a~~~~~~~~~~~  156 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR--IKDKFNQIPLH-RAASVGSLKLIEL  156 (229)
T ss_dssp             HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHHTCHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccccc--ccCCCCCCccc-hhhhccccccccc
Confidence            67888888888887654  4467788999999999999999999999998888  78999999999 8999999999999


Q ss_pred             hhhCC-CCCCCCCcccccccccCCcCcCHHHHHHH---hhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCC
Q 010920          163 VIPCG-TANPSKPLRFELVIYPSLQDVQPRAVIAL---WKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEG  232 (497)
Q Consensus       163 Ll~~g-a~~~~~~~~~~~~l~~~~~~~~~~~~~~l---~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~  232 (497)
                      |++++ .+.+.++..+.++++.+...++...+..|   .+++++..+..|.|||++|++.   ...++|..++.
T Consensus       157 Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~~---~~~~~Ll~~g~  227 (229)
T d1ixva_         157 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNNVV  227 (229)
T ss_dssp             HHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSCH---HHHHHHHHHCC
T ss_pred             ccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhhH---HHHHHHHHcCC
Confidence            99887 45677777788999999888876555443   4789999999999999998753   56677665544

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.94  E-value=1.3e-26  Score=220.03  Aligned_cols=188  Identities=16%  Similarity=0.105  Sum_probs=133.7

Q ss_pred             hhhhchhhhc-CCCchHHHHHHHcCCHHHHHHH--------HHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCC
Q 010920            5 LNSMNQHQQR-QSKDELLYQWVIAGDVDAIRAL--------RSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA   75 (497)
Q Consensus         5 l~~~~~~~~~-~~G~T~Lh~Aa~~g~~~~v~~L--------l~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga   75 (497)
                      |.+.+....+ ..|.||||+||..|+.++|++|        ++.|+++|.+|.+|.||||+|+..| +.++|++|+++|+
T Consensus        20 l~~~~~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g-~~~iv~~Ll~~Ga   98 (277)
T d2fo1e1          20 ITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLAR-RRRLVAYLMKAGA   98 (277)
T ss_dssp             CSTTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHT-CHHHHHHHHHTTC
T ss_pred             HHhcCCCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccc-ccccccccccccc
Confidence            3333333334 4699999999999999999877        5679999999999999999999985 5999999999999


Q ss_pred             CCCCcCc---------ccCCCHHHHHHHHh---------------------------------------CC--------C
Q 010920           76 NINAYRP---------AKRGLEPTVRLLLS---------------------------------------CG--------A   99 (497)
Q Consensus        76 ~~~~~~~---------~~~g~~~~v~~Ll~---------------------------------------~g--------a   99 (497)
                      +++..+.         ...++.++++++..                                       ..        .
T Consensus        99 d~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (277)
T d2fo1e1          99 DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA  178 (277)
T ss_dssp             CSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGG
T ss_pred             ccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccc
Confidence            9998764         22233333332221                                       11        1


Q ss_pred             CCcccCCCCCCHHHHHHHcCCHHHHHHH-HHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccc
Q 010920          100 NALVRNDDCHTALGVARIKGHINVVRAI-ESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFE  178 (497)
Q Consensus       100 ~~~~~~~~g~T~Lh~A~~~g~~~~v~~L-l~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  178 (497)
                      ..+..+..|.|+||+++..++.++++++ ...+.+++  .+|..|.|||| +|+..|+.+++++|+++|++.+..+..+.
T Consensus       179 ~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~--~~d~~g~tpL~-~A~~~g~~~iv~~Ll~~gadin~~d~~G~  255 (277)
T d2fo1e1         179 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD--KQDEDGKTPIM-LAAQEGRIEVVMYLIQQGASVEAVDATDH  255 (277)
T ss_dssp             GTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT--CCCTTCCCHHH-HHHHHTCHHHHHHHHHTTCCSSCCCSSSC
T ss_pred             cccccccCCCCcccccccccccccccccccccccccc--ccCCCCCCHHH-HHHHcCCHHHHHHHHHCcCCCCCcCCCCC
Confidence            1233455677777777777777777654 34566666  67777777777 77777777777777777777777776777


Q ss_pred             cccccCCcCcCHHHHHHH
Q 010920          179 LVIYPSLQDVQPRAVIAL  196 (497)
Q Consensus       179 ~~l~~~~~~~~~~~~~~l  196 (497)
                      ++++.|...++...+-.|
T Consensus       256 T~L~~A~~~~~~~iv~lL  273 (277)
T d2fo1e1         256 TARQLAQANNHHNIVDIF  273 (277)
T ss_dssp             CHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHH
Confidence            777777777766555444

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.7e-26  Score=198.84  Aligned_cols=144  Identities=22%  Similarity=0.279  Sum_probs=136.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccCCCHH
Q 010920           19 ELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKRGLEP   89 (497)
Q Consensus        19 T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~g~~~   89 (497)
                      +|||+||..|++++|++|+++|+++|.+|.+|.||||+|+ . ++.+++++|+++|++++..+.         +..++..
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~-~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-L-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-S-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-c-ccccccccccccccccccccccCcccccccccccccc
Confidence            7999999999999999999999999999999999999887 4 459999999999999988776         7889999


Q ss_pred             HHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCC-cccccccccCCCCHHHHHhhhcCCHHHHHHhhhCC
Q 010920           90 TVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC-YFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCG  167 (497)
Q Consensus        90 ~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~-~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~g  167 (497)
                      .++.|++.+.+++..+..|.+|||+|+..++.+++++|+++++ +++  .+|.+|.|||| +|+..++.+++++|+++|
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~--~~d~~g~TpL~-~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          81 TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG--HRNHKGDTACD-LARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccc--ccCCCCCCHHH-HHHHcCCHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999987 677  89999999999 999999999999999987

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=3.7e-26  Score=214.51  Aligned_cols=155  Identities=19%  Similarity=0.113  Sum_probs=138.5

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------   82 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------   82 (497)
                      .++..|.||||+|+..|+.++|++|+++|++++.+|.+|.||||+|+..+ +.+++++|++.+........         
T Consensus        40 ~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~-~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~  118 (255)
T d1oy3d_          40 LQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVR-AHTCACVLLQPRPSHPRDASDTYLTQSQD  118 (255)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTT-CHHHHHHHSSSCCSSCCCC----------
T ss_pred             CcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhccC-chHHHHHHHhhccchhcccchhhhhHHhh
Confidence            35679999999999999999999999999999999999999999999985 49999999876543222100         


Q ss_pred             -----------------------------------------------ccCCCHHHHHHHHhCCCCCcc-cCCCCCCHHHH
Q 010920           83 -----------------------------------------------AKRGLEPTVRLLLSCGANALV-RNDDCHTALGV  114 (497)
Q Consensus        83 -----------------------------------------------~~~g~~~~v~~Ll~~ga~~~~-~~~~g~T~Lh~  114 (497)
                                                                     +..++.+++++|++++++.+. .+..|.||||+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~  198 (255)
T d1oy3d_         119 CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHL  198 (255)
T ss_dssp             -------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHH
T ss_pred             hcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccccccccccccccccc
Confidence                                                           468899999999999998875 46789999999


Q ss_pred             HHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCC
Q 010920          115 ARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTAN  170 (497)
Q Consensus       115 A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~  170 (497)
                      |+..|+.+++++|+++|++++  .+|.+|.|||| +|+..++.+++++|+++||+.
T Consensus       199 A~~~~~~~~v~~Ll~~gadin--~~d~~g~t~L~-~A~~~~~~~i~~~Ll~~Ga~~  251 (255)
T d1oy3d_         199 AVEAQAASVLELLLKAGADPT--ARMYGGRTPLG-SALLRPNPILARLLRAHGAPE  251 (255)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHTSSCHHHHHHHHHTTCCC
T ss_pred             cccccHHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHCCCHHHHHHHHHcCCCC
Confidence            999999999999999999999  89999999999 999999999999999999963

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=9.6e-26  Score=194.66  Aligned_cols=142  Identities=22%  Similarity=0.235  Sum_probs=130.9

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccCCC
Q 010920           17 KDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKRGL   87 (497)
Q Consensus        17 G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~g~   87 (497)
                      ..||||.||+.|+.++|++||++|++++ .|..|+||||+|+.. ++.++++.++...........         +...+
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQY-GHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHH-TCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            3499999999999999999999999987 689999999999998 559999999988766555433         67889


Q ss_pred             HHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHh
Q 010920           88 EPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV  163 (497)
Q Consensus        88 ~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~L  163 (497)
                      .+++++|+.++++++.++..|.||||+|+..|+.+++++|+++|++++  .+|.+|.|||| +|+..|+.+++++|
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~--~~d~~g~Tpl~-~A~~~g~~eiv~lL  152 (153)
T d1awcb_          80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH--TQSKFCKTAFD-ISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHH
T ss_pred             ceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCc--ccCCCCCCHHH-HHHHcCCHHHHHhC
Confidence            999999999999999999999999999999999999999999999999  89999999999 99999999999977

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.93  E-value=3.3e-26  Score=219.21  Aligned_cols=201  Identities=18%  Similarity=0.148  Sum_probs=170.9

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccC
Q 010920           15 QSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKR   85 (497)
Q Consensus        15 ~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~   85 (497)
                      .+|.||||.||..|++++|++||++|+++|.+|.+|.||||+|+.. ++.++|++|+++|++.+..+.         +..
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~-g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~  116 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACID-DNVDMVKFLVENGANINQPDNEGWIPLHAAASC  116 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhc-CCceeeeeecccccccccccccccccccccccc
Confidence            4577999999999999999999999999999999999999999998 559999999999998777654         778


Q ss_pred             CCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCC-Ccc------------------------cccccc
Q 010920           86 GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI-CYF------------------------CGWLRE  140 (497)
Q Consensus        86 g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g-~~i------------------------~~~~~~  140 (497)
                      ++.++++.|+++|+..+..+..|.+++++|+..++.+.++.++... .++                        +....+
T Consensus       117 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (291)
T d1s70b_         117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA  196 (291)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCT
T ss_pred             cccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccccccccc
Confidence            9999999999999999889999999999999888888888777431 111                        101467


Q ss_pred             cCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHH--hhcCCCCCCCCCCChHHHHHH
Q 010920          141 FYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL--WKAKIDEPKFHQPDPSLTIYD  217 (497)
Q Consensus       141 ~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~g~~pl~~a~~  217 (497)
                      ..|.|||| .|+..++.+++++|+++|++.+..+..+.++++.+...++...+..|  .|++++.+|..|.|||++|+.
T Consensus       197 ~~g~t~L~-~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         197 KSGGTALH-VAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             TTCCCHHH-HHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             CCCCChhh-HHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            78899999 88899999999999999998887777788899988887777655333  888899999999999998864

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1e-24  Score=207.68  Aligned_cols=215  Identities=20%  Similarity=0.173  Sum_probs=180.1

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCccccCC-CCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc------------
Q 010920           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDK-EGKTPLIVACMDSGLINVAKTLIELGANINAYRP------------   82 (497)
Q Consensus        16 ~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~-~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~------------   82 (497)
                      ++.|+||+|++.|++++|++||++|+++|.++. .|.||||+|+..|+ .+++++|++.+.+......            
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~-~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~   82 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSR-EDIVELLLRHGADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC-HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCC-HHHhhhhccccccccccccccchhhHHHhhc
Confidence            468999999999999999999999999998765 69999999999855 9999999999887766543            


Q ss_pred             ------------------------------ccCCCHHHHHHHHhCCCCCcc----------cCCCCCCHHHHHHHcCCHH
Q 010920           83 ------------------------------AKRGLEPTVRLLLSCGANALV----------RNDDCHTALGVARIKGHIN  122 (497)
Q Consensus        83 ------------------------------~~~g~~~~v~~Ll~~ga~~~~----------~~~~g~T~Lh~A~~~g~~~  122 (497)
                                                    +..++...+..++....+++.          .+..|.||||+|+.+|+.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T d1wdya_          83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             CCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHH
Confidence                                          566778888888877665543          3346899999999999999


Q ss_pred             HHHHHHHC-CCcccccccccCCCCHHHHHh----hhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHH-
Q 010920          123 VVRAIESH-ICYFCGWLREFYGPSFLEALA----PQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL-  196 (497)
Q Consensus       123 ~v~~Ll~~-g~~i~~~~~~~~G~T~Lh~~A----~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l-  196 (497)
                      ++++|+++ |++++  ..+..|.++++ .+    ...+..+++++|+++|++.+.++..+.++++.+.+.++...+..+ 
T Consensus       163 ~~~~Ll~~~~~~i~--~~~~~~~~~~~-~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL  239 (285)
T d1wdya_         163 VLKILLDEMGADVN--ACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL  239 (285)
T ss_dssp             HHHHHHHTSCCCTT--CCCTTSCCHHH-HHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhccCCCcc--cccCCCCcccc-cccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHH
Confidence            99999864 78898  78999998887 44    334446799999999999988887889999999988877665433 


Q ss_pred             --hhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCCCH
Q 010920          197 --WKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDK  234 (497)
Q Consensus       197 --~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~~  234 (497)
                        .+.+++..+..|.||||+|+..++.+.+++|.+++.+.
T Consensus       240 ~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~  279 (285)
T d1wdya_         240 EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST  279 (285)
T ss_dssp             HSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCS
T ss_pred             HcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence              57899999999999999999999999999998877653

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2e-25  Score=193.59  Aligned_cols=142  Identities=25%  Similarity=0.276  Sum_probs=132.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccCCCH
Q 010920           19 ELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKRGLE   88 (497)
Q Consensus        19 T~Lh~Aa~~g~~~~v~~Ll~~-ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~g~~   88 (497)
                      +.||.||..|+.++|+.||+. ++++|.+|..|+||||+|+. |+ .+++++|++++++++..+.         +..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~-~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GS-TAIALELLKQGASPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-cc-cccccccccccccccccccccccccccccccccc
Confidence            359999999999999999986 68999999999999999985 45 8999999999999988765         888999


Q ss_pred             HHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhC
Q 010920           89 PTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC  166 (497)
Q Consensus        89 ~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~  166 (497)
                      +++++++++|++++.+|..|.||||+|+..|+.+++++|+ .|++++  .+|.+|.|||| +|+..|+.+++++|++|
T Consensus        82 ~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~--~~d~~G~TpL~-~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLH--RRDARGLTPLE-LALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTT--CCCTTSCCHHH-HHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccccccccCCCCeeecccccccccccccccc-cccccc--ccCCCCCCHHH-HHHHcCCHHHHHHHHhh
Confidence            9999999999999999999999999999999999999887 789998  89999999999 99999999999999976

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3e-25  Score=203.95  Aligned_cols=175  Identities=19%  Similarity=0.216  Sum_probs=134.4

Q ss_pred             CCchHHHHHHHcCCH----HHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------
Q 010920           16 SKDELLYQWVIAGDV----DAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------   82 (497)
Q Consensus        16 ~G~T~Lh~Aa~~g~~----~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------   82 (497)
                      +|.||||+|+..|+.    +++++|...|+++|.+|.+|+||||+|+..| +.+++++|+++|++++..+.         
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~-~~~iv~~L~~~g~d~~~~d~~g~t~l~~~   79 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITN-QPEIAEALLGAGCDPELRDFRGNTPLHLA   79 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTT-CHHHHHCCCSCCCCSCCCCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccc-ccccccccccccccccccccccccccccc
Confidence            589999999999985    4555666778899999999999999999985 49999999999998888765         


Q ss_pred             ccCCCHHHHHHHHhCCCCC------cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCC
Q 010920           83 AKRGLEPTVRLLLSCGANA------LVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS  156 (497)
Q Consensus        83 ~~~g~~~~v~~Ll~~ga~~------~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~  156 (497)
                      +..++.++++.|++.+...      +.....|.||||.|+..++.+.+++|+..|+.++ ...+.+|.|||| +|+..|+
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~-~~~~~~G~T~L~-~A~~~g~  157 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN-AQEPCNGRTALH-LAVDLQN  157 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTTCCCHHH-HHHHTTC
T ss_pred             cccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccc-cccccCCCCccc-ccccccc
Confidence            6678888999988876542      2334568899999999999999999999988887 134567999999 8999999


Q ss_pred             HHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHH
Q 010920          157 RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAV  193 (497)
Q Consensus       157 ~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~  193 (497)
                      .+++++|+++|++.+..+..+.++++.+...+....+
T Consensus       158 ~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~  194 (221)
T d1iknd_         158 PDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQ  194 (221)
T ss_dssp             HHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHH
T ss_pred             HHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHH
Confidence            9999999998887766665556666665555544443

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.6e-24  Score=195.94  Aligned_cols=167  Identities=22%  Similarity=0.219  Sum_probs=121.9

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHH----cCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------
Q 010920           16 SKDELLYQWVIAGDVDAIRALRS----QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------   82 (497)
Q Consensus        16 ~G~T~Lh~Aa~~g~~~~v~~Ll~----~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------   82 (497)
                      +|.||||+||+.|+.++|+.|++    .|+++|.+|..|+||||+|+..| +.+++++|+++|++++....         
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~-~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITT-LPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccc-ccccccccccccccccccccccccccccc
Confidence            79999999999999999998875    79999999999999999999985 59999999999999888654         


Q ss_pred             ccCCCH-------------------------------------HHHHHHHhCCCCCc-ccCCCCCCHHHHHHHcCCHHHH
Q 010920           83 AKRGLE-------------------------------------PTVRLLLSCGANAL-VRNDDCHTALGVARIKGHINVV  124 (497)
Q Consensus        83 ~~~g~~-------------------------------------~~v~~Ll~~ga~~~-~~~~~g~T~Lh~A~~~g~~~~v  124 (497)
                      ...++.                                     ...+.|.....+.. .....|.++|+.|+..+...++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence            223333                                     33344444433322 2344567777777777777777


Q ss_pred             HHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCc
Q 010920          125 RAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQ  186 (497)
Q Consensus       125 ~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~  186 (497)
                      +.++++|..++  .+|..|.|||| +|+..|+.+++++|+++|++.+.++..+.++++.|.+
T Consensus       161 ~~~~~~~~~~~--~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~  219 (228)
T d1k1aa_         161 QLLLQHGANVN--AQMYSGSSALH-SASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS  219 (228)
T ss_dssp             HHHHHTTCCTT--CBCTTSCBHHH-HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSS
T ss_pred             hhhhhhccccc--cccccCcchHH-HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHh
Confidence            77777777666  66777777777 6777777777777777776665555445555555543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.92  E-value=5.7e-24  Score=193.10  Aligned_cols=180  Identities=18%  Similarity=0.092  Sum_probs=155.4

Q ss_pred             hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc----------
Q 010920           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP----------   82 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~----------   82 (497)
                      .|.+|.||||+||+.|+.+++++|++.|+++|.++..+.++++.++..+. ...................          
T Consensus        19 ~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (209)
T d1ot8a_          19 MDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADA-MGVFQILLRNRATNLNARMHDGTTPLILA   97 (209)
T ss_dssp             HHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHTCTTCCTTCCCTTCCCHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence            35699999999999999999999999999999999999999999999854 6666665554333222111          


Q ss_pred             ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010920           83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV  162 (497)
Q Consensus        83 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~  162 (497)
                      .........+.|...+++++.++..|.|||++++.++..++++.|++++.+++  ..|..|.|||| +|+..|+.+++++
T Consensus        98 ~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~--~~d~~g~TpL~-~A~~~g~~~~v~~  174 (209)
T d1ot8a_          98 ARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRD--AQDDKDETPLF-LAAREGSYEASKA  174 (209)
T ss_dssp             HHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHH
T ss_pred             ccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccccc--ccccccccccc-hhccccHHHHHHH
Confidence            45566778889999999999999999999999999999999999999999999  89999999999 8999999999999


Q ss_pred             hhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCCCCCCCCCCChHHHHHHhCChhHHHHH
Q 010920          163 VIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFA  227 (497)
Q Consensus       163 Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l  227 (497)
                      |+++|++.+                               .++..|.|||++|+.+++.+.+++|
T Consensus       175 Ll~~gad~n-------------------------------~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         175 LLDNFANRE-------------------------------ITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHTTCCTT-------------------------------CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHCCCCCC-------------------------------CcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            999986653                               3456789999999999999998876

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=6.2e-24  Score=195.74  Aligned_cols=184  Identities=16%  Similarity=0.070  Sum_probs=159.9

Q ss_pred             hhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccc---cCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-----
Q 010920           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEW---MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP-----   82 (497)
Q Consensus        11 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~---~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~-----   82 (497)
                      ..+|.+|.||||+|+..|+.+++++|+++|++++.   .+..|.||+|+|+.. ++.++++.++..+.+.+....     
T Consensus        28 ~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (229)
T d1ixva_          28 LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV-GNLEVVKSLYDRPLKPDLNKITNQGV  106 (229)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH-TCHHHHHHHHSSSSCCCTTCCCTTSC
T ss_pred             cccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc-cccccccccccccccccccccccccc
Confidence            34678999999999999999999999999999864   567899999999998 569999999999876655332     


Q ss_pred             ------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCC-CcccccccccCCCCHHHHHhhhcC
Q 010920           83 ------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI-CYFCGWLREFYGPSFLEALAPQLM  155 (497)
Q Consensus        83 ------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g-~~i~~~~~~~~G~T~Lh~~A~~~~  155 (497)
                            +..++.+++++|+..|.+.+.++..|.||||+|+..|+.+++++|++.+ .+++  .+|..|.|||| +|+..+
T Consensus       107 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in--~~d~~g~TpLh-~A~~~~  183 (229)
T d1ixva_         107 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN--WQDKQGWTPLF-HALAEG  183 (229)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSC--CCCTTSCCHHH-HHHHTT
T ss_pred             cccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccccccccc--ccccccCCchh-hhcccc
Confidence                  6778999999999999999999999999999999999999999999987 5777  79999999999 999999


Q ss_pred             CHHHHHHhhh-CCCCCCCCCcccccccccCCcCcCHHHHHHHhhc
Q 010920          156 SRKIWVVVIP-CGTANPSKPLRFELVIYPSLQDVQPRAVIALWKA  199 (497)
Q Consensus       156 ~~~iv~~Ll~-~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~  199 (497)
                      +.+++++|++ .|++.+..+..+.++++.+.+. .+..++...|+
T Consensus       184 ~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~~-~~~~~Ll~~g~  227 (229)
T d1ixva_         184 HGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE-QVKKFFLNNVV  227 (229)
T ss_dssp             CHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSCH-HHHHHHHHHCC
T ss_pred             cHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhhH-HHHHHHHHcCC
Confidence            9999999996 5999998888899999998843 33444443443

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.6e-24  Score=199.07  Aligned_cols=153  Identities=22%  Similarity=0.137  Sum_probs=140.1

Q ss_pred             hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc----------
Q 010920           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP----------   82 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~----------   82 (497)
                      +|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|. .+++++|+..+........          
T Consensus        35 ~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~t  113 (221)
T d1iknd_          35 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGC-LASVGVLTQSCTTPHLHSILKATNYNGHT  113 (221)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTC-HHHHHHHHHSTTTTSSSCGGGCCCTTCCC
T ss_pred             CCCCCCcccccccccccccccccccccccccccccccccccccccccccc-ccccchhhhhcccccccccccccccccch
Confidence            56799999999999999999999999999999999999999999999955 9999999998766544322          


Q ss_pred             -----ccCCCHHHHHHHHhCCCCCcccC-CCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCC
Q 010920           83 -----AKRGLEPTVRLLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS  156 (497)
Q Consensus        83 -----~~~g~~~~v~~Ll~~ga~~~~~~-~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~  156 (497)
                           +..++.+++++|+..|+.++..+ ..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++
T Consensus       114 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~--~~~~~G~tpl~-~A~~~~~  190 (221)
T d1iknd_         114 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN--RVTYQGYSPYQ-LTWGRPS  190 (221)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC--CCCTTCCCGGG-GCTTSSC
T ss_pred             hhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCccc--ccCCCCCCHHH-HHHHCCC
Confidence                 68899999999999999988765 579999999999999999999999999999  89999999999 9999999


Q ss_pred             HHHHHHhhhCCCC
Q 010920          157 RKIWVVVIPCGTA  169 (497)
Q Consensus       157 ~~iv~~Ll~~ga~  169 (497)
                      .+++++|++.+.+
T Consensus       191 ~~~~~~l~~~~~~  203 (221)
T d1iknd_         191 TRIQQQLGQLTLE  203 (221)
T ss_dssp             HHHHHHHHTTSCG
T ss_pred             HHHHHHHHHcCCc
Confidence            9999999988765

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.7e-24  Score=180.32  Aligned_cols=121  Identities=21%  Similarity=0.245  Sum_probs=105.9

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHH
Q 010920           16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLL   95 (497)
Q Consensus        16 ~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll   95 (497)
                      .+.++||+|++.|+.++|++|+++|+++|.+|..|.||||+|+ . ++.+++++|+++|                     
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~-g~~~~v~~Ll~~g---------------------   58 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-M-GSARVAELLLLHG---------------------   58 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-T-TCHHHHHHHHTTT---------------------
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-c-ccccccccccccc---------------------
Confidence            4678999999999999999999999999999999999999776 4 3466666655554                     


Q ss_pred             hCCCCCcccCCCCC-CHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhh
Q 010920           96 SCGANALVRNDDCH-TALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIP  165 (497)
Q Consensus        96 ~~ga~~~~~~~~g~-T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~  165 (497)
                         ++++.++..|. ||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..|+.+++++|++
T Consensus        59 ---a~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~--~~d~~G~T~l~-~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          59 ---AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD--VRDAWGRLPVD-LAEELGHRDVARYLRA  123 (125)
T ss_dssp             ---CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSS--CCCTTCCCHHH-HHHHHTCHHHHHHHSS
T ss_pred             ---cccccccccccccccccccccccccccccccccccccc--cccCCCCCHHH-HHHHcCCHHHHHHHHh
Confidence               55555666665 69999999999999999999999999  89999999999 9999999999999985

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=3.7e-25  Score=182.39  Aligned_cols=107  Identities=21%  Similarity=0.260  Sum_probs=96.3

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhC
Q 010920           18 DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSC   97 (497)
Q Consensus        18 ~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~   97 (497)
                      +|||++|++.|+.++|++|+++|+++|.+|..|+||||+|+..|+ .++                        +++|+++
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~-~~~------------------------~~~ll~~   57 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQ-LEI------------------------LEFLLLK   57 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHST-TTH------------------------HHHHHHS
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccc-ccc------------------------ccccccc
Confidence            589999999999999999999999999999999999999999854 444                        4555555


Q ss_pred             CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhh
Q 010920           98 GANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAP  152 (497)
Q Consensus        98 ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~  152 (497)
                      |++++.+|..|.||||+|+.+|+.+++++|+++|++++  .+|.+|.|||| +|.
T Consensus        58 g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~--~~d~~G~t~l~-~a~  109 (118)
T d1myoa_          58 GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKT--VKGPDGLTALE-ATD  109 (118)
T ss_dssp             SCTTTCCSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSS--SSSSSTCCCCC-TCS
T ss_pred             cceeeecccccccchhhhhhcCchhhhhhhhcccccce--eeCCCCCCHHH-HHh
Confidence            66677789999999999999999999999999999999  89999999999 774

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.90  E-value=4.3e-23  Score=197.23  Aligned_cols=172  Identities=20%  Similarity=0.187  Sum_probs=151.5

Q ss_pred             hhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc--------
Q 010920           11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP--------   82 (497)
Q Consensus        11 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~--------   82 (497)
                      ..+|.+|.||||+|++.|+.++|++|+++|++.+..+..+.||||+|+.. ++.++++.|+++|+..+..+.        
T Consensus        67 n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  145 (291)
T d1s70b_          67 NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC-GYLDIAEYLISQGAHVGAVNSEGDTPLDI  145 (291)
T ss_dssp             TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccc-cccchhhcccccCcccccccccCcccccc
Confidence            34577999999999999999999999999999999999999999999998 459999999999998877654        


Q ss_pred             -ccCCCHHHHHHHHh---------------------------CCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcc
Q 010920           83 -AKRGLEPTVRLLLS---------------------------CGANALVRNDDCHTALGVARIKGHINVVRAIESHICYF  134 (497)
Q Consensus        83 -~~~g~~~~v~~Ll~---------------------------~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i  134 (497)
                       +..++.+.++.++.                           ...+....+..|.||||+|+..|+.+++++|+++|+++
T Consensus       146 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~di  225 (291)
T d1s70b_         146 AEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV  225 (291)
T ss_dssp             CCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT
T ss_pred             ccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecc
Confidence             44555666666553                           22334456788999999999999999999999999999


Q ss_pred             cccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCc
Q 010920          135 CGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQ  186 (497)
Q Consensus       135 ~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~  186 (497)
                      +  .++..|.|||| +|+..|+.++|++|+++|++.+..+..+.++++.|.+
T Consensus       226 n--~~~~~g~TpL~-~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         226 N--IKDYDGWTPLH-AAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             T--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             c--ccccCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            9  89999999999 9999999999999999999999988889999999975

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.8e-24  Score=177.86  Aligned_cols=122  Identities=15%  Similarity=0.088  Sum_probs=105.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCC
Q 010920           19 ELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCG   98 (497)
Q Consensus        19 T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~g   98 (497)
                      ++||.||+.|+.++|++|+++|+++|.+|.+|+||||+|+..|. .+++++|++                        +|
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~-~~~~~~ll~------------------------~g   57 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGH-TEIVKFLVQ------------------------FG   57 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTC-HHHHHHHHH------------------------HT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccccccc-ccccccccc------------------------cc
Confidence            68999999999999999999999999999999999999999844 555555554                        45


Q ss_pred             CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccc-cCCCCHHHHHh--hhcCCHHHHHHhhhCCC
Q 010920           99 ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE-FYGPSFLEALA--PQLMSRKIWVVVIPCGT  168 (497)
Q Consensus        99 a~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~-~~G~T~Lh~~A--~~~~~~~iv~~Ll~~ga  168 (497)
                      ++++.+|.+|+||||+|+.+|+.+++++|+++|++++  ..+ ..|.|+++ ++  ...|+.+++++|+..+.
T Consensus        58 ~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~--~~~~~~~~~~~~-~~~a~~~g~~eiv~~L~~~~~  127 (130)
T d1ycsb1          58 VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF--AMTYSDMQTAAD-KCEEMEEGYTQCSQFLYGVQE  127 (130)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCSSSCCCHHH-HCCSSSTTCCCHHHHHHHHHH
T ss_pred             cccccccccCcccccccchhhHHHHHHHHHHcCCCcc--cccCCCCCCHHH-HHHHHHcChHHHHHHHHhHHH
Confidence            5566788999999999999999999999999999998  555 46899988 55  56788999999987543

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.87  E-value=3.2e-23  Score=196.34  Aligned_cols=208  Identities=14%  Similarity=0.092  Sum_probs=141.3

Q ss_pred             chHHHHHHH-cCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHH--------HcCCCCCCcCc------
Q 010920           18 DELLYQWVI-AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI--------ELGANINAYRP------   82 (497)
Q Consensus        18 ~T~Lh~Aa~-~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll--------~~ga~~~~~~~------   82 (497)
                      +||||+|++ .|+.++++.|.+.++++... ..|+||||+||..| +.++|++|+        +.|+++|.++.      
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~~~~-~~g~T~Lh~A~~~g-~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpL   78 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNIIDP-RHNRTVLHWIASNS-SAEKSEDLIVHEAKECIAAGADVNAMDCDENTPL   78 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTTCCC-SSCCCHHHHHHCTT-CCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHH
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCcCCC-CCCccHHHHHHHcC-CHHHHHHHHhcchhHHHHcCCCccccCCCCCeee
Confidence            478996665 57788888888877665322 36999999999985 588888775        55777777654      


Q ss_pred             ---ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCC---ccc---------------------
Q 010920           83 ---AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC---YFC---------------------  135 (497)
Q Consensus        83 ---~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~---~i~---------------------  135 (497)
                         +..|+.+++++|+++|++++.+|.+|.||||+|+..++.++++++...+.   .++                     
T Consensus        79 h~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (277)
T d2fo1e1          79 MLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQ  158 (277)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTH
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccc
Confidence               66777777777777777777777777777777777777766666643210   000                     


Q ss_pred             ---------------------ccccccCCCCHHHHHhhhcCCHHHHHHhh-hCCCCCCCCCcccccccccCCcCcCHHHH
Q 010920          136 ---------------------GWLREFYGPSFLEALAPQLMSRKIWVVVI-PCGTANPSKPLRFELVIYPSLQDVQPRAV  193 (497)
Q Consensus       136 ---------------------~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll-~~ga~~~~~~~~~~~~l~~~~~~~~~~~~  193 (497)
                                           ....+..|.|||| .++..++.+++++++ ..+.+....+..+.++++.+...+....+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~-~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv  237 (277)
T d2fo1e1         159 VASAKLLVEKGAKVDYDGAARKDSEKYKGRTALH-YAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVV  237 (277)
T ss_dssp             HHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHH-HHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             cccccccccccccccccccccccccccCCCCccc-cccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHH
Confidence                                 0123445677777 677777777776543 45555555555667777777766655444


Q ss_pred             HHH--hhcCCCCCCCCCCChHHHHHHhCChhHHHHHH
Q 010920          194 IAL--WKAKIDEPKFHQPDPSLTIYDQATKIRYKFAS  228 (497)
Q Consensus       194 ~~l--~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~  228 (497)
                      ..|  .+++++..|.+|.||||+|+.+++.+.+++|.
T Consensus       238 ~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~  274 (277)
T d2fo1e1         238 MYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD  274 (277)
T ss_dssp             HHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            333  66777777777777777777777777777664

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.2e-21  Score=186.18  Aligned_cols=160  Identities=26%  Similarity=0.287  Sum_probs=141.7

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCcccc----------CCCCChHHHHHHHhCCcHHHHHHHHHc-CCCCCCc
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWM----------DKEGKTPLIVACMDSGLINVAKTLIEL-GANINAY   80 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~----------d~~G~TpLh~Aa~~g~~~~~v~~Ll~~-ga~~~~~   80 (497)
                      ..+..|.|+|++|+..|+...++.++....+++.+          +..|.||||+|+.+|. .+++++|+++ |++++..
T Consensus       100 ~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~~~~Ll~~~~~~i~~~  178 (285)
T d1wdya_         100 ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH-VEVLKILLDEMGADVNAC  178 (285)
T ss_dssp             CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC-HHHHHHHHHTSCCCTTCC
T ss_pred             ccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCC-HHHHHHHHhccCCCcccc
Confidence            34678999999999999999999999987665443          4569999999999954 9999999976 8898887


Q ss_pred             Cc-------------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCcccccccccCCCCH
Q 010920           81 RP-------------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES-HICYFCGWLREFYGPSF  146 (497)
Q Consensus        81 ~~-------------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~-~g~~i~~~~~~~~G~T~  146 (497)
                      +.             ...+..+++++|+++|++++.++..|.||||+|+..|+.++|++|++ .|++++  .+|.+|.||
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din--~~d~~G~Tp  256 (285)
T d1wdya_         179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN--DTDSDGKTA  256 (285)
T ss_dssp             CTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTT--CCCTTSCCH
T ss_pred             cCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCc--CCCCCCCCH
Confidence            65             33455679999999999999999999999999999999999999997 589999  899999999


Q ss_pred             HHHHhhhcCCHHHHHHhhhCCCCCCCCCc
Q 010920          147 LEALAPQLMSRKIWVVVIPCGTANPSKPL  175 (497)
Q Consensus       147 Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~  175 (497)
                      || +|++.++.+++++|+++||+.+..+.
T Consensus       257 L~-~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         257 LL-LAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             HH-HHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             HH-HHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            99 99999999999999999999887663

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.7e-22  Score=198.88  Aligned_cols=146  Identities=21%  Similarity=0.170  Sum_probs=105.3

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------cc
Q 010920           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AK   84 (497)
Q Consensus        14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~   84 (497)
                      +..|.||||+|+..++.++++.++..+...+..+..|.||||+|+..++ .+++++|+++|++++..+.         +.
T Consensus       228 ~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~-~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~  306 (408)
T d1n11a_         228 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGH-VPVADVLIKHGVMVDATTRMGYTPLHVASH  306 (408)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC-HHHHHHHHHHTCCTTCCCSSCCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCc-HHHHHHHHHCCCccccccccccccchhhcc
Confidence            4566777777777777777777777777777777777777777777743 7777777777777666544         55


Q ss_pred             CCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHh
Q 010920           85 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV  163 (497)
Q Consensus        85 ~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~L  163 (497)
                      .++.++++++++.|++++.+|.+|+||||+|+++|+.++|++|+++|++++  .+|.+|.|||| +|+..|+.++|++|
T Consensus       307 ~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n--~~d~~G~t~L~-~A~~~~~~~iv~~L  382 (408)
T d1n11a_         307 YGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN--EVSSDGTTPLA-IAKRLGYISVTDVL  382 (408)
T ss_dssp             SSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCSSSCCHHH-HHHHTTCHHHHHHH
T ss_pred             cCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHH
Confidence            666777777777777777777777777777777777777777777777777  67777777777 77777777776644

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=6e-22  Score=170.47  Aligned_cols=127  Identities=15%  Similarity=0.106  Sum_probs=112.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCcccc------CCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHH
Q 010920           19 ELLYQWVIAGDVDAIRALRSQGASLEWM------DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVR   92 (497)
Q Consensus        19 T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~------d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~   92 (497)
                      ..|+.|++.+++..+..++..|++++.+      +..|+||||+|+..+.                      .++.++++
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~----------------------~~~~~iv~   65 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVD----------------------RTSLHIVD   65 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCC----------------------TTTHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcC----------------------CCCHHHHH
Confidence            4577889999999999999999987765      6789999999998632                      34566777


Q ss_pred             HHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCC
Q 010920           93 LLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTAN  170 (497)
Q Consensus        93 ~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~  170 (497)
                      +|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..|+.+++++|++.++..
T Consensus        66 ~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~--~~d~~g~tpL~-~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          66 FLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE--IANESGETPLD-IAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHcCCChhhhhhhhccccccccccccccccccccccCcccc--ccCCCCCCHHH-HHHHcCCHHHHHHHHHhCCCC
Confidence            7777778888899999999999999999999999999999999  89999999999 999999999999999987654

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.87  E-value=1.2e-23  Score=206.52  Aligned_cols=196  Identities=12%  Similarity=0.043  Sum_probs=124.7

Q ss_pred             hhhcCCCchHHHHHHHcCCHHHHHH---HHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCC
Q 010920           11 HQQRQSKDELLYQWVIAGDVDAIRA---LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGL   87 (497)
Q Consensus        11 ~~~~~~G~T~Lh~Aa~~g~~~~v~~---Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~   87 (497)
                      +.++..|.||||+||+.||.+++++   |++.|+++|.+|.+|+||||+||.+ +|.++|++|+++|++++..+      
T Consensus        84 ~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~-G~~~~v~~Ll~~g~~~~~~~------  156 (346)
T d2ajaa1          84 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN-GHLHVLNRLCELAPTEIMAM------  156 (346)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT-TCHHHHHHHHHSCTTTHHHH------
T ss_pred             HhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCHHHHHHHHHcCCCccccc------
Confidence            4467799999999999999887765   7899999999999999999999998 55788887777776665421      


Q ss_pred             HHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccc-cccccCCCCHHHHHhhhcCCHHHHHHhhhC
Q 010920           88 EPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCG-WLREFYGPSFLEALAPQLMSRKIWVVVIPC  166 (497)
Q Consensus        88 ~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~-~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~  166 (497)
                                      .+.+|.||||+|+.+||.++|++|++.|++... ...+.+|.|||| +|+.+|+.+++++|+++
T Consensus       157 ----------------~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~-~A~~~g~~~iv~~Ll~~  219 (346)
T d2ajaa1         157 ----------------IQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRW-AAVGRGHHNVINFLLDC  219 (346)
T ss_dssp             ----------------HSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHH-HHSTTCCHHHHHHHTTS
T ss_pred             ----------------cccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhh-HHhhcCHHHHHHHHHhC
Confidence                            123466666666666666666666666654320 023344555555 66666666666666666


Q ss_pred             CCCCC---------------------------------------CCCc----------ccccccccCCcCcCHHHHHHHh
Q 010920          167 GTANP---------------------------------------SKPL----------RFELVIYPSLQDVQPRAVIALW  197 (497)
Q Consensus       167 ga~~~---------------------------------------~~~~----------~~~~~l~~~~~~~~~~~~~~l~  197 (497)
                      |++..                                       ..+.          .....++.+...+....+..+.
T Consensus       220 ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll  299 (346)
T d2ajaa1         220 PVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLL  299 (346)
T ss_dssp             HHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHH
T ss_pred             CCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHH
Confidence            54310                                       0000          0012233333333433333332


Q ss_pred             --h-----cCCCCCCCCCCChHHHHHHhCChhHHHHHHhC
Q 010920          198 --K-----AKIDEPKFHQPDPSLTIYDQATKIRYKFASAN  230 (497)
Q Consensus       198 --~-----~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~  230 (497)
                        +     ......+.+|.||||+|+..|+.+.+++|...
T Consensus       300 ~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         300 SIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             TSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             hCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence              1     22334456789999999999999999999754

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=7.4e-22  Score=189.97  Aligned_cols=48  Identities=15%  Similarity=0.209  Sum_probs=45.9

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhC
Q 010920           14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDS   61 (497)
Q Consensus        14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g   61 (497)
                      |.+|+||||+||..|+.++|++||++|++++.+|..|+||||+|+..+
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~  151 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSV  151 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSS
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcc
Confidence            678999999999999999999999999999999999999999999864

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=8.1e-20  Score=157.41  Aligned_cols=145  Identities=15%  Similarity=0.128  Sum_probs=120.6

Q ss_pred             hHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc--------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHH
Q 010920           52 TPLIVACMDSGLINVAKTLIELGANINAYRP--------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINV  123 (497)
Q Consensus        52 TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~--------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~  123 (497)
                      +|||+||.+|+ .++|++|+++|++++.++.        +..|+.+++++|+++|++++.++..|.++|+.++..++.+.
T Consensus         3 ~~Lh~Aa~~g~-~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGD-LEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTC-HHHHHHHTTSCCCTTCCCTTSCCHHHHCCSSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCC-HHHHHHHHHCCCCcCccCCcccccccccccccccccccccccccccccccccCccccccccccccccc
Confidence            89999999966 9999999999988887765        66778888888888888888888888888888888888888


Q ss_pred             HHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCCCC
Q 010920          124 VRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDE  203 (497)
Q Consensus       124 v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~  203 (497)
                      ++.|+.++.+++  ..+..|.+||| .|+..++.+++++|+.+++                              .+.+.
T Consensus        82 ~~~l~~~~~~~~--~~~~~~~~~l~-~a~~~~~~~~~~~Ll~~~~------------------------------~~~~~  128 (156)
T d1ihba_          82 LQTLLEFQADVN--IEDNEGNLPLH-LAAKEGHLRVVEFLVKHTA------------------------------SNVGH  128 (156)
T ss_dssp             HHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHSC------------------------------CCTTC
T ss_pred             cccccccccccc--ccccccccccc-ccccccccccccccccccc------------------------------ccccc
Confidence            888888888887  77888888888 7888888888888887764                              23445


Q ss_pred             CCCCCCChHHHHHHhCChhHHHHHHhC
Q 010920          204 PKFHQPDPSLTIYDQATKIRYKFASAN  230 (497)
Q Consensus       204 ~~~~g~~pl~~a~~~~~~~~~~~l~~~  230 (497)
                      .+..|.||||+|+..++.+.+++|.++
T Consensus       129 ~d~~g~TpL~~A~~~~~~~iv~~Ll~~  155 (156)
T d1ihba_         129 RNHKGDTACDLARLYGRNEVVSLMQAN  155 (156)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            567899999999999999999998764

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5.3e-20  Score=166.91  Aligned_cols=146  Identities=22%  Similarity=0.160  Sum_probs=129.1

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCc----Cc-----
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY----RP-----   82 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~----~~-----   82 (497)
                      .+|..|.||||+|+..|+.+++++|+++|++++..+..|.++++.|... .+.++++.+..........    ..     
T Consensus        35 ~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (228)
T d1k1aa_          35 IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEH-RSPTCLRALLDSAAPGTLDLEARNYDGLTA  113 (228)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHSCTTSCCTTCCCTTSCCH
T ss_pred             ccCCCCCccceehhccccccccccccccccccccccccccccccccccc-ccccchhhhhhccccccccccccccccccc
Confidence            4567999999999999999999999999999999999999999999998 4488888877653221111    00     


Q ss_pred             --------------------------------------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHH
Q 010920           83 --------------------------------------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV  124 (497)
Q Consensus        83 --------------------------------------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v  124 (497)
                                                            +..+...+++.++++|.+++.+|..|.||||+|+..|+.+++
T Consensus       114 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v  193 (228)
T d1k1aa_         114 LHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLV  193 (228)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHH
T ss_pred             cccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHH
Confidence                                                  677889999999999999999999999999999999999999


Q ss_pred             HHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 010920          125 RAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV  161 (497)
Q Consensus       125 ~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~  161 (497)
                      ++|+++|++++  .+|.+|.|||| +|+..++.++|+
T Consensus       194 ~~Ll~~Gad~n--~~d~~G~TpL~-~A~~~~~~divk  227 (228)
T d1k1aa_         194 RTLVRSGADSS--LKNCHNDTPLM-VARSRRVIDILR  227 (228)
T ss_dssp             HHHHHTTCCTT--CCCTTSCCTTT-TCSSHHHHHHHT
T ss_pred             HHHHHCCCCCC--CCCCCCCCHHH-HHHhCCCccccC
Confidence            99999999999  89999999999 999999988875

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=3.5e-20  Score=152.10  Aligned_cols=107  Identities=9%  Similarity=-0.038  Sum_probs=93.4

Q ss_pred             ChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHC
Q 010920           51 KTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH  130 (497)
Q Consensus        51 ~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~  130 (497)
                      .|||+||+.+|+ .++|++|                        +++|++++.++..|+||||+|+..|+.+++++|+++
T Consensus         3 ~tpL~~A~~~g~-~~~v~~L------------------------l~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~   57 (118)
T d1myoa_           3 DKEFMWALKNGD-LDEVKDY------------------------VAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK   57 (118)
T ss_dssp             HHHHHHHHHTTC-HHHHHHH------------------------HTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHS
T ss_pred             ChHHHHHHHCCC-HHHHHHH------------------------HHhhhccccccccccccccccccccccccccccccc
Confidence            389999999855 5555554                        455566667889999999999999999999999999


Q ss_pred             CCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCC
Q 010920          131 ICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSL  185 (497)
Q Consensus       131 g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~  185 (497)
                      |++++  .+|..|.|||| +|+..|+.+++++|+++|++.+..+..+.++++.+.
T Consensus        58 g~din--~~d~~g~tpLh-~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          58 GADIN--APDKHHITPLL-SAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             SCTTT--CCSSSCSCHHH-HHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             cceee--ecccccccchh-hhhhcCchhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            99999  89999999999 999999999999999999998888877888887764

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.81  E-value=1.1e-21  Score=192.42  Aligned_cols=152  Identities=14%  Similarity=0.063  Sum_probs=120.5

Q ss_pred             hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccC--CCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcC-----c---
Q 010920           13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMD--KEGKTPLIVACMDSGLINVAKTLIELGANINAYR-----P---   82 (497)
Q Consensus        13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d--~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~-----~---   82 (497)
                      ++..|.||||+||+.||.++|++|+++|++++..+  .+|.||||+||.+ +|.++|++|++.|++....+     .   
T Consensus       122 ~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~-g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~  200 (346)
T d2ajaa1         122 IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAEN-GHLHVLNRLCELAPTEATAMIQAENYYAF  200 (346)
T ss_dssp             -CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHT-TCHHHHHHHHHSCGGGHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHH-hhHHHHHHHHHcCCcccccccccCCCcch
Confidence            45689999999999999999999999999998876  4599999999998 66999999999998653321     1   


Q ss_pred             ----ccCCCHHHHHHHHhCCCCCcccC---------------------------------CC----------------CC
Q 010920           83 ----AKRGLEPTVRLLLSCGANALVRN---------------------------------DD----------------CH  109 (497)
Q Consensus        83 ----~~~g~~~~v~~Ll~~ga~~~~~~---------------------------------~~----------------g~  109 (497)
                          +..|+.++|++|+++|++++..+                                 ..                +.
T Consensus       201 l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~  280 (346)
T d2ajaa1         201 RWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYML  280 (346)
T ss_dssp             HHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHH
T ss_pred             hhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhh
Confidence                67899999999998876443211                                 11                13


Q ss_pred             CHHHHHHHcCCHHHHHHHHHCCCcccc---cccccCCCCHHHHHhhhcCCHHHHHHhhhC
Q 010920          110 TALGVARIKGHINVVRAIESHICYFCG---WLREFYGPSFLEALAPQLMSRKIWVVVIPC  166 (497)
Q Consensus       110 T~Lh~A~~~g~~~~v~~Ll~~g~~i~~---~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~  166 (497)
                      ++|+.|+..|+.+++++|++.+.....   ...+.+|.|||| +|++.|+.++|++|++.
T Consensus       281 ~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~Lh-lA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         281 RNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLR-LALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHH-HHHHHTCTTHHHHHTTS
T ss_pred             hHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHH-HHHHcCcHHHHHHHhCC
Confidence            567777778889999999987753220   134567899999 89999999999999964

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=9.7e-19  Score=150.79  Aligned_cols=142  Identities=13%  Similarity=0.082  Sum_probs=126.4

Q ss_pred             hHHHHHHHhCCcHHHHHHHHHc-CCCCCCcCc--------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHH
Q 010920           52 TPLIVACMDSGLINVAKTLIEL-GANINAYRP--------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN  122 (497)
Q Consensus        52 TpLh~Aa~~g~~~~~v~~Ll~~-ga~~~~~~~--------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~  122 (497)
                      ..||.||.+|+ .++|+.||+. +++++..+.        +..++.+++++|++++++++..+..|.+||++++..++.+
T Consensus         4 ~~L~~Aa~~g~-~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGD-VQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTC-HHHHHHHHHTTCCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCC-HHHHHHHHHhCCCCCCccCCCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            45999999966 9999999986 788888766        6778999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCCC
Q 010920          123 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKID  202 (497)
Q Consensus       123 ~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~  202 (497)
                      ++++++++|++++  .+|..|.|||| +|+..|+.+++++|+ .|++                               ++
T Consensus        83 ~~~~~l~~~~~~n--~~~~~~~t~L~-~A~~~~~~~i~~~L~-~~~~-------------------------------~~  127 (156)
T d1bd8a_          83 TLKVLVEHGADVN--VPDGTGALPIH-LAVQEGHTAVVSFLA-AESD-------------------------------LH  127 (156)
T ss_dssp             HHHHHHHTTCCSC--CCCTTSCCHHH-HHHHHTCHHHHHHHH-TTSC-------------------------------TT
T ss_pred             ccccccccccccc--cccCCCCeeec-ccccccccccccccc-cccc-------------------------------cc
Confidence            9999999999999  89999999999 899999999999887 4543                               34


Q ss_pred             CCCCCCCChHHHHHHhCChhHHHHHHh
Q 010920          203 EPKFHQPDPSLTIYDQATKIRYKFASA  229 (497)
Q Consensus       203 ~~~~~g~~pl~~a~~~~~~~~~~~l~~  229 (497)
                      ..+.+|.|||++|+..+..+.+++|..
T Consensus       128 ~~d~~G~TpL~~A~~~g~~~iv~~Ll~  154 (156)
T d1bd8a_         128 RRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             CCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            456789999999999999999998865

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=2.8e-19  Score=153.57  Aligned_cols=95  Identities=18%  Similarity=0.223  Sum_probs=82.2

Q ss_pred             cCCCchHHHHHHHc---CCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHH
Q 010920           14 RQSKDELLYQWVIA---GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPT   90 (497)
Q Consensus        14 ~~~G~T~Lh~Aa~~---g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~   90 (497)
                      +..|+||||+|++.   |+.++|++|+++|+++|.+|..|+||||+|+..|+ .+++++|                    
T Consensus        42 ~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~-~~~v~~L--------------------  100 (154)
T d1dcqa1          42 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDN-AECLKLL--------------------  100 (154)
T ss_dssp             SSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTC-HHHHHHH--------------------
T ss_pred             CCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccccccccc-ccccccc--------------------
Confidence            56799999999984   78999999999999999999999999999999844 5555554                    


Q ss_pred             HHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCc
Q 010920           91 VRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY  133 (497)
Q Consensus        91 v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~  133 (497)
                          +++|++++.+|..|.||||+|+..|+.+++++|++.+..
T Consensus       101 ----l~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1         101 ----LRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             ----HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ----cccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence                555566677899999999999999999999999987654

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.8e-19  Score=147.41  Aligned_cols=120  Identities=15%  Similarity=0.021  Sum_probs=100.4

Q ss_pred             CChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH
Q 010920           50 GKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES  129 (497)
Q Consensus        50 G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~  129 (497)
                      +.++||+|+..|+ .++|++|+                        ++|++++.++..|.||||+|+ .|+.+++++|++
T Consensus         3 ~~~~L~~Aa~~G~-~~~v~~Ll------------------------~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~   56 (125)
T d1bi7b_           3 SADWLATAAARGR-VEEVRALL------------------------EAGANPNAPNSYGRRPIQVMM-MGSARVAELLLL   56 (125)
T ss_dssp             STTHHHHHHHHTC-HHHHHHHH------------------------TTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHT
T ss_pred             ChhHHHHHHHCCC-HHHHHHHH------------------------HcCCccccccccccccccccc-cccccccccccc
Confidence            5689999999955 55555555                        555566678899999999775 799999999999


Q ss_pred             CCCcccccccccCCC-CHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCCCCCCCCC
Q 010920          130 HICYFCGWLREFYGP-SFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQ  208 (497)
Q Consensus       130 ~g~~i~~~~~~~~G~-T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g  208 (497)
                      +|++++  .++..|. |||| +|+..|+.+++++|+++|++.                               +..+..|
T Consensus        57 ~ga~~~--~~~~~~~~~~L~-~A~~~g~~~~v~~Ll~~ga~~-------------------------------~~~d~~G  102 (125)
T d1bi7b_          57 HGAEPN--CADPATLTRPVH-DAAREGFLDTLVVLHRAGARL-------------------------------DVRDAWG  102 (125)
T ss_dssp             TTCCCC--CCCTTTCCCHHH-HHHHHTCHHHHHHHHHHTCCS-------------------------------SCCCTTC
T ss_pred             cccccc--cccccccccccc-ccccccccccccccccccccc-------------------------------ccccCCC
Confidence            999999  7888776 6999 999999999999999998665                               3445679


Q ss_pred             CChHHHHHHhCChhHHHHHHh
Q 010920          209 PDPSLTIYDQATKIRYKFASA  229 (497)
Q Consensus       209 ~~pl~~a~~~~~~~~~~~l~~  229 (497)
                      .|||++|+.+++.+.+++|..
T Consensus       103 ~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_         103 RLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CCHHHHHHHHTCHHHHHHHSS
T ss_pred             CCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999998753

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=6.7e-19  Score=146.94  Aligned_cols=95  Identities=16%  Similarity=0.147  Sum_probs=82.6

Q ss_pred             hHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Q 010920           52 TPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI  131 (497)
Q Consensus        52 TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g  131 (497)
                      ++||.||..|+ .++|+                        +|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus         3 ~lL~~A~~~G~-~~~v~------------------------~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g   57 (130)
T d1ycsb1           3 ALLLDSSLEGE-FDLVQ------------------------RIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFG   57 (130)
T ss_dssp             HHHHHHHHHTC-HHHHH------------------------HHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHcCC-HHHHH------------------------HHHHcCCCccccccccccccccccccccccccccccccc
Confidence            68999999855 55555                        555556666778999999999999999999999999999


Q ss_pred             CcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCC
Q 010920          132 CYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKP  174 (497)
Q Consensus       132 ~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~  174 (497)
                      ++++  .+|.+|+|||| +|+..|+.+++++|+++|++.+...
T Consensus        58 ~~~~--~~d~~g~tpLh-~A~~~g~~~~v~~Ll~~ga~v~~~~   97 (130)
T d1ycsb1          58 VNVN--AADSDGWTPLH-CAASCNNVQVCKFLVESGAAVFAMT   97 (130)
T ss_dssp             CCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             cccc--cccccCccccc-ccchhhHHHHHHHHHHcCCCccccc
Confidence            9999  89999999999 9999999999999999998875443

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=4.4e-18  Score=145.81  Aligned_cols=142  Identities=18%  Similarity=0.142  Sum_probs=115.1

Q ss_pred             ChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc--------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHH
Q 010920           51 KTPLIVACMDSGLINVAKTLIELGANINAYRP--------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN  122 (497)
Q Consensus        51 ~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~--------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~  122 (497)
                      .||||.||+.|+ .++|++||++|++++....        +..++.++++.++.........+..+.++++.++...+.+
T Consensus         3 ~t~L~~Aa~~g~-~~~v~~LL~~ga~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T d1awcb_           3 GKKLLEAARAGQ-DDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHTC-HHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             CHHHHHHHHCCC-HHHHHHHHHcCCCcccccCCCccccccccccccccccccccccccccccccccccccccccccccce
Confidence            499999999966 9999999999988764211        6677788888888777776667777788888888888888


Q ss_pred             HHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCCC
Q 010920          123 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKID  202 (497)
Q Consensus       123 ~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~  202 (497)
                      ++++|..++++.+  .++.+|.|||| +|+..|+.+++++|+++|++.                               +
T Consensus        82 ~~~~l~~~~~~~~--~~~~~g~T~L~-~A~~~g~~~iv~~ll~~gad~-------------------------------~  127 (153)
T d1awcb_          82 IVEVLLKHGADVN--AKDMLKMTALH-WATEHNHQEVVELLIKYGADV-------------------------------H  127 (153)
T ss_dssp             HHHHHHTTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCT-------------------------------T
T ss_pred             eeecccccCCccc--cccccCchHHH-hhhhcchhheeeeccccccCC-------------------------------c
Confidence            8888888888877  77888888888 788888888888888877554                               4


Q ss_pred             CCCCCCCChHHHHHHhCChhHHHHH
Q 010920          203 EPKFHQPDPSLTIYDQATKIRYKFA  227 (497)
Q Consensus       203 ~~~~~g~~pl~~a~~~~~~~~~~~l  227 (497)
                      ..+.+|.|||++|+.+++.+.+++|
T Consensus       128 ~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         128 TQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            4557899999999999999998876

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=8.2e-17  Score=145.08  Aligned_cols=148  Identities=22%  Similarity=0.212  Sum_probs=124.0

Q ss_pred             hhcCCCchHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc--------
Q 010920           12 QQRQSKDELLYQWVIAGDVDAIRALRSQGA-SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP--------   82 (497)
Q Consensus        12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga-~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~--------   82 (497)
                      .++..+.++++.++..++............ ........|.++.+.+... ......++|+.++++++..+.        
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~~~~~~~~~~~~~~t~l~~  129 (209)
T d1ot8a_          51 SQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARL-AIEGMVEDLITADADINAADNSGKTALHW  129 (209)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHT-TCTTHHHHHHHTTCCTTCBCTTSCBHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccc-cchhhhhhhhhhcccccccCCCCCCcchh
Confidence            346678888888888888887777666543 3333455677888877776 557888888888888777654        


Q ss_pred             -ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 010920           83 -AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV  161 (497)
Q Consensus        83 -~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~  161 (497)
                       +..+...+++.|++.+.+++..|..|.||||+|+..|+.++|++|+++|++++  .+|..|.|||| +|+++|+.++|+
T Consensus       130 ~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n--~~d~~g~Tpl~-~A~~~~~~~iv~  206 (209)
T d1ot8a_         130 AAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANRE--ITDHMDRLPRD-VASERLHHDIVR  206 (209)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHH
T ss_pred             hcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHcCCHHHHh
Confidence             66788899999999999999999999999999999999999999999999999  89999999999 999999999999


Q ss_pred             Hh
Q 010920          162 VV  163 (497)
Q Consensus       162 ~L  163 (497)
                      +|
T Consensus       207 lL  208 (209)
T d1ot8a_         207 LL  208 (209)
T ss_dssp             HH
T ss_pred             hc
Confidence            86

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=1.4e-17  Score=159.55  Aligned_cols=139  Identities=17%  Similarity=0.081  Sum_probs=102.0

Q ss_pred             cCCCcccc-CCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccCCC-------HHHHHHHHhCCCCC
Q 010920           39 QGASLEWM-DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKRGL-------EPTVRLLLSCGANA  101 (497)
Q Consensus        39 ~ga~~n~~-d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~g~-------~~~v~~Ll~~ga~~  101 (497)
                      .+.++|.. |.+|+||||+||..|+ .++|++||++|++++.++.         +..++       .+++++|.   ..+
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~-~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~  170 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIAN-LELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCL  170 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTC-HHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGG
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCC-HHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hhh
Confidence            56788866 8999999999999855 9999999999999998876         33222       23444443   345


Q ss_pred             cccCCCCCCHHHHHHHcCC----HH--------HHHHHHHCCCc------------------------------------
Q 010920          102 LVRNDDCHTALGVARIKGH----IN--------VVRAIESHICY------------------------------------  133 (497)
Q Consensus       102 ~~~~~~g~T~Lh~A~~~g~----~~--------~v~~Ll~~g~~------------------------------------  133 (497)
                      +..|..|+||||+++..+.    ..        ++.+++..+..                                    
T Consensus       171 ~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (301)
T d1sw6a_         171 ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN  250 (301)
T ss_dssp             GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH
T ss_pred             hhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhc
Confidence            6678899999998886543    22        23334433221                                    


Q ss_pred             -ccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccC
Q 010920          134 -FCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPS  184 (497)
Q Consensus       134 -i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~  184 (497)
                       +|  .+|.+|+|||| +|++.|+.++|++|+++|++.+..+..+.++++.+
T Consensus       251 ~in--~~D~~G~TpLh-~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A  299 (301)
T d1sw6a_         251 MLN--AQDSNGDTCLN-IAARLGNISIVDALLDYGADPFIANKSGLRPVDFG  299 (301)
T ss_dssp             TTT--CCCTTSCCHHH-HHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred             Ccc--CCCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHc
Confidence             45  67899999999 99999999999999999988766665555555544

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.3e-11  Score=91.57  Aligned_cols=51  Identities=33%  Similarity=0.758  Sum_probs=44.4

Q ss_pred             CcccccccccCCceEEeCCCCccchHHHHHHHhc-cCcccccccccccceeEe
Q 010920          443 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKINQVIRL  494 (497)
Q Consensus       443 ~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i~~~~~~  494 (497)
                      ...|+||++...+++.+||||.| |..|+.+|.. ++.+||+||..|.....+
T Consensus        23 ~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~wl~~~~~~CP~Cr~~i~~~~~i   74 (79)
T d1fbva4          23 FQLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPI   74 (79)
T ss_dssp             TTBCTTTSSSBCCEECSSSCCEE-CHHHHHHHHHTTCCSCTTTCCCCCCCCCS
T ss_pred             CCCCccCCCcCCCeEEeCCCCee-eHHHHHHHHHHCcCcCCCCCcCccCCcee
Confidence            34799999999999999999999 9999999986 456799999999775544

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.05  E-value=2.7e-11  Score=87.12  Aligned_cols=50  Identities=28%  Similarity=0.801  Sum_probs=43.2

Q ss_pred             CcccccccccCCce-EEeCCCCccchHHHHHHHhccCcccccccccccceeE
Q 010920          443 SSSCVICWEAPVEG-ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIR  493 (497)
Q Consensus       443 ~~~C~iC~~~~~~~-~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~  493 (497)
                      ...|+||++.+.+. +.+||||.| |..|+.+|...+..||+||.+|...+.
T Consensus         5 ~d~C~IC~~~~~~~~~~~~C~H~F-c~~Ci~~w~~~~~~CP~CR~~i~~~~~   55 (68)
T d1chca_           5 AERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVH   55 (68)
T ss_dssp             CCCCSSCCSCCCSCEEETTTTEEE-STTHHHHHHHHSCSTTTTCCCCCCEEC
T ss_pred             CCCCccCCcCccCCcEEeCCCCcC-cHHHHHHHHHhCCcCCCCCcchHhhcc
Confidence            34899999998764 557999999 999999999988899999999976553

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.95  E-value=1.2e-10  Score=86.94  Aligned_cols=47  Identities=28%  Similarity=0.543  Sum_probs=42.0

Q ss_pred             CCcccccccccCCceEEeCCCCccchHHHHHHHhc-cCccccccccccc
Q 010920          442 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKIN  489 (497)
Q Consensus       442 ~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i~  489 (497)
                      +...|+||++.+.+++.+||||.| |..|+.+|.+ +..+||+||.++.
T Consensus        22 ~~l~C~IC~~~~~~pv~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~p~~   69 (86)
T d1rmda2          22 KSISCQICEHILADPVETSCKHLF-CRICILRCLKVMGSYCPSCRYPCF   69 (86)
T ss_dssp             HHTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             cCcCCccCCcchhcceecCCCChh-hHHHHHHHHhhCCCcCcccCCCCC
Confidence            446899999999999999999999 9999999876 4568999999874

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.3e-11  Score=83.17  Aligned_cols=45  Identities=24%  Similarity=0.566  Sum_probs=39.2

Q ss_pred             CCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920          442 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ  490 (497)
Q Consensus       442 ~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  490 (497)
                      +...|+||++.+.+++.+||||.| |..|+.++.   .+||+||++|.-
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~f-C~~Ci~~~~---~~CP~Cr~~~~~   49 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTL-CSGCLEASG---MQCPICQAPWPL   49 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCS-BTTTCSSSS---SSCSSCCSSSSC
T ss_pred             CCCCCcccCcccCCCEEecCCCHH-hHHHHHcCC---CcCcCCCCcccC
Confidence            445999999999999999999999 999987654   589999998853

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.94  E-value=1.6e-10  Score=78.83  Aligned_cols=47  Identities=21%  Similarity=0.633  Sum_probs=39.4

Q ss_pred             CCCcccccccccCCc---eEEe-CCCCccchHHHHHHHhccCcccccccccc
Q 010920          441 GSSSSCVICWEAPVE---GACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKI  488 (497)
Q Consensus       441 ~~~~~C~iC~~~~~~---~~~~-pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i  488 (497)
                      ++...|+||++.+..   +..+ +|+|.| |..|+.+|...+..||+||.+|
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~F-h~~Ci~~Wl~~~~~CP~CR~~i   53 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGSHSTCPLCRLTV   53 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEE-CTTHHHHTTTTCCSCSSSCCCS
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcc-cHHHHHHHHHhCCcCCCCCCEe
Confidence            445689999998753   4444 699999 9999999999889999999876

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.90  E-value=3.3e-10  Score=77.74  Aligned_cols=44  Identities=18%  Similarity=0.294  Sum_probs=41.2

Q ss_pred             ccccccccCCceEEeC-CCCccchHHHHHHHhccCccccccccccc
Q 010920          445 SCVICWEAPVEGACVP-CGHMAGCMSCLSEIKAKKGDCPVCRTKIN  489 (497)
Q Consensus       445 ~C~iC~~~~~~~~~~p-C~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~  489 (497)
                      .|+||++.+.+++.+| |||.| |..|+.+|...+++||+||.++.
T Consensus         2 ~C~Ic~~~~~~Pv~~~~cGh~f-c~~cI~~~l~~~~~CP~c~~~l~   46 (56)
T d2baya1           2 LCAISGKVPRRPVLSPKSRTIF-EKSLLEQYVKDTGNDPITNEPLS   46 (56)
T ss_dssp             CCTTTCSCCSSEEEETTTTEEE-EHHHHHHHHHHHSBCTTTCCBCC
T ss_pred             CCccCCchHHhcCccCCCCCcc-cHHHHHHHHhhccCCCccCCcCC
Confidence            6999999999999885 99999 99999999998889999999884

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=6.2e-10  Score=78.92  Aligned_cols=48  Identities=27%  Similarity=0.672  Sum_probs=37.8

Q ss_pred             CCcccccccccC-----CceEEeCCCCccchHHHHHHHhc-cCcccccccccccc
Q 010920          442 SSSSCVICWEAP-----VEGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKINQ  490 (497)
Q Consensus       442 ~~~~C~iC~~~~-----~~~~~~pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i~~  490 (497)
                      ++..|+||++..     ...+..||||.| |..|+.+|.. .+..||+||++|..
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~~CP~CR~~i~~   55 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCE-EHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHh-hHHHHHHHhCcCcCCCCCCCcCccc
Confidence            345999999852     224567999999 9999999975 45679999999843

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=5.9e-10  Score=75.08  Aligned_cols=45  Identities=29%  Similarity=0.652  Sum_probs=36.8

Q ss_pred             ccccccccCCc----eEEeCCCCccchHHHHHHHhcc-Ccccccccccccc
Q 010920          445 SCVICWEAPVE----GACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  490 (497)
Q Consensus       445 ~C~iC~~~~~~----~~~~pC~H~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~  490 (497)
                      +|+||++.+..    +..+||||.| |..|+.+|... +.+||+||+++.+
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~-c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQI-CRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCC-CHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCcc-chHHHHHHHhhcCCCCCccCCcCCC
Confidence            79999997632    3445999999 99999999974 5689999998753

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=3.4e-09  Score=78.62  Aligned_cols=51  Identities=22%  Similarity=0.124  Sum_probs=44.4

Q ss_pred             CCCCCcccccccccCCceEEeCCCCccchHHHHHHHhcc-Ccccccccccccc
Q 010920          439 DDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  490 (497)
Q Consensus       439 ~~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~  490 (497)
                      +..++..|+||++.+.+++.+||||.| |..|+.+|... +..||+||.++..
T Consensus         3 eiP~~l~CpIc~~l~~dPv~~~cGhtf-c~~ci~~~l~~~~~~cP~c~~~l~~   54 (80)
T d2c2la2           3 DIPDYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFNPVTRSPLTQ   54 (80)
T ss_dssp             CCCSTTBCTTTCSBCSSEEECSSCCEE-ETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CCCccccCcCcCchhhhhcccCCcCee-cHHHHHHHHhcCCccCCCccccccc
Confidence            345677999999999999999999999 99999999864 4679999998853

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.5e-09  Score=84.94  Aligned_cols=48  Identities=29%  Similarity=0.730  Sum_probs=41.5

Q ss_pred             CCCcccccccccCCceEEeCCCCccchHHHHHHHhccC---ccccccccccc
Q 010920          441 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK---GDCPVCRTKIN  489 (497)
Q Consensus       441 ~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~---~~Cp~Cr~~i~  489 (497)
                      .+...|+||++.+.+++.+||||.| |..|+.+|....   ..||+||.++.
T Consensus        19 ~~~l~CpIC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (103)
T d1jm7a_          19 QKILECPICLELIKEPVSTKCDHIF-CKFCMLKLLNQKKGPSQCPLCKNDIT   69 (103)
T ss_dssp             HHHTSCSSSCCCCSSCCBCTTSCCC-CSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             ccCcCCCccCchhCCeEEcCCCCch-hhHHHHHHHHHCCCCCcCcCCCCcCC
Confidence            3445899999999999999999999 999999998643   47999999884

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.69  E-value=6e-09  Score=76.87  Aligned_cols=50  Identities=16%  Similarity=0.173  Sum_probs=44.0

Q ss_pred             CCCCcccccccccCCceEEeCCCCccchHHHHHHHhcc-Ccccccccccccc
Q 010920          440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ  490 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~  490 (497)
                      ..++..|+||++.+.+++.++|||.| |..|+.+|... ...||.|+.++..
T Consensus         5 iP~~l~CpIc~~~m~dPV~~~cgh~f-c~~ci~~~~~~~~~~cP~~~~~l~~   55 (78)
T d1t1ha_           5 FPEYFRCPISLELMKDPVIVSTGQTY-ERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             CSSSSSCTTTSCCCSSEEEETTTEEE-EHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             CCccCCCcCcCchhhCceEccCCCcc-hHHHHHHHHHHCCCCCCcccccCCc
Confidence            34567999999999999999999999 99999999875 4679999998854

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.51  E-value=2.3e-08  Score=79.61  Aligned_cols=45  Identities=29%  Similarity=0.674  Sum_probs=36.4

Q ss_pred             CcccccccccCC------------------ceEEeCCCCccchHHHHHHHhcc-----Ccccccccccc
Q 010920          443 SSSCVICWEAPV------------------EGACVPCGHMAGCMSCLSEIKAK-----KGDCPVCRTKI  488 (497)
Q Consensus       443 ~~~C~iC~~~~~------------------~~~~~pC~H~~~C~~C~~~~~~~-----~~~Cp~Cr~~i  488 (497)
                      +..|+||++...                  .+.++||+|.| |..|+..|...     +.+||+||+.+
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~F-H~~Ci~~Wl~~~~~~~~~~CP~CR~~~   92 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAF-HLLCLLAMYCNGNKDGSLQCPSCKTIY   92 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEE-CHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCChh-hHHHHHHHHHhcCcCCCCccccccchh
Confidence            447999998653                  24678999999 99999999863     24799999876

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=4.2e-08  Score=73.88  Aligned_cols=33  Identities=21%  Similarity=0.381  Sum_probs=30.1

Q ss_pred             eEEeCCCCccchHHHHHHHhccCccccccccccc
Q 010920          456 GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  489 (497)
Q Consensus       456 ~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~  489 (497)
                      ++.+||+|.| |..|+.+|...+..||+||++..
T Consensus        52 ~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          52 VAWGVCNHAF-HFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             EEEETTSCEE-EHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             eEEccccCcc-cHHHHHHHHHHCCcCCCCCCccc
Confidence            6778999999 99999999999899999999763

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=7.4e-09  Score=79.87  Aligned_cols=46  Identities=30%  Similarity=0.672  Sum_probs=39.5

Q ss_pred             CCCcccccccccCCceEEe-CCCCccchHHHHHHHhccCccccccccccc
Q 010920          441 GSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKIN  489 (497)
Q Consensus       441 ~~~~~C~iC~~~~~~~~~~-pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~  489 (497)
                      .+...|+||++.+.+++.+ +|||.| |..|+.+|..  .+||.||.++.
T Consensus        20 ~~~l~C~IC~~~~~~pv~~~~CgH~f-C~~Ci~~~~~--~~CP~Cr~~~~   66 (97)
T d1jm7b_          20 EKLLRCSRCTNILREPVCLGGCEHIF-CSNCVSDCIG--TGCPVCYTPAW   66 (97)
T ss_dssp             HHTTSCSSSCSCCSSCBCCCSSSCCB-CTTTGGGGTT--TBCSSSCCBCS
T ss_pred             hhcCCCccCCchhhcCceeCCCCCch-hHHHHHHHHh--ccccccCCcCc
Confidence            4556899999999998864 899999 9999999985  36999998774

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1.2e-07  Score=72.72  Aligned_cols=51  Identities=12%  Similarity=0.043  Sum_probs=45.1

Q ss_pred             CCCCCcccccccccCCceEEeCCCC-ccchHHHHHHHhccCcccccccccccc
Q 010920          439 DDGSSSSCVICWEAPVEGACVPCGH-MAGCMSCLSEIKAKKGDCPVCRTKINQ  490 (497)
Q Consensus       439 ~~~~~~~C~iC~~~~~~~~~~pC~H-~~~C~~C~~~~~~~~~~Cp~Cr~~i~~  490 (497)
                      +..++..|+||.+.+.++|.+||+| .| |..|+.+|...+..||+||.++..
T Consensus        18 ~~P~~f~CPI~~~lm~dPV~~~~~~~ty-~r~~I~~~l~~~~~~P~~~~~l~~   69 (98)
T d1wgma_          18 DACDEFLDPIMSTLMCDPVVLPSSRVTV-DRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             SCCTTTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             CCcHHhCCcCchhHHHHHHhcccccchh-hHHHHHHHHHhcCCcccccccccc
Confidence            3456789999999999999999886 67 999999999888899999998853

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.23  E-value=2.2e-07  Score=64.28  Aligned_cols=49  Identities=29%  Similarity=0.524  Sum_probs=40.0

Q ss_pred             CCCCcccccccccCCceEEeCCC-----CccchHHHHHHHhc--cCccccccccccc
Q 010920          440 DGSSSSCVICWEAPVEGACVPCG-----HMAGCMSCLSEIKA--KKGDCPVCRTKIN  489 (497)
Q Consensus       440 ~~~~~~C~iC~~~~~~~~~~pC~-----H~~~C~~C~~~~~~--~~~~Cp~Cr~~i~  489 (497)
                      .++...|.||++...+....||+     |.| |..|+.+|..  .+.+||+||+++.
T Consensus         3 ded~~~C~IC~~~~~~~~~~~c~c~~c~h~~-H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           3 DEDVPVCWICNEELGNERFRACGCTGELENV-HRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             TCSCCEETTTTEECSCCCCCSCCCSSGGGSC-CHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCCccCCccCCCceeEecccCCCCCEE-cHHHHHHHHhhCCCCCCcccCCeee
Confidence            34566999999988777777775     999 9999999985  3468999999764

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=3.2e-05  Score=58.46  Aligned_cols=43  Identities=23%  Similarity=0.475  Sum_probs=33.0

Q ss_pred             CcccccccccCCc---eEEeCCCCccchHHHHHHHhcc--------Ccccccccc
Q 010920          443 SSSCVICWEAPVE---GACVPCGHMAGCMSCLSEIKAK--------KGDCPVCRT  486 (497)
Q Consensus       443 ~~~C~iC~~~~~~---~~~~pC~H~~~C~~C~~~~~~~--------~~~Cp~Cr~  486 (497)
                      ...|+||++....   +.+.+|+|.| |..|+..+...        ..+||.|+-
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~f-C~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIF-CTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEE-EHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCcCccCCCcccCCceEEECCCCCEe-CCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            4599999998753   4556899999 99999987752        246998654

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.71  E-value=0.05  Score=36.43  Aligned_cols=32  Identities=31%  Similarity=0.629  Sum_probs=28.0

Q ss_pred             cccccccccCCceEEeCCC----CccchHHHHHHHhc
Q 010920          444 SSCVICWEAPVEGACVPCG----HMAGCMSCLSEIKA  476 (497)
Q Consensus       444 ~~C~iC~~~~~~~~~~pC~----H~~~C~~C~~~~~~  476 (497)
                      ..|.+|.++..+.-|+.|-    |.| |..|......
T Consensus         9 l~CtlC~erLEdtHFVQCPsv~~HkF-CFpCsr~sik   44 (80)
T d2cs3a1           9 LCCTICHERLEDTHFVQCPSVPSHKF-CFPCSRESIK   44 (80)
T ss_dssp             CCCSSSCSCCSSTTSEECSSCSSCEE-CHHHHHHHHH
T ss_pred             eeeeeehhhhcCCceEeCCCCcCCce-eccccHHHHH
Confidence            4899999999999888884    999 9999887665