Citrus Sinensis ID: 010937

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------
MADEEERVLENQLEQQLNEQRDSLTALNDAVASDPFNPELQEVLKELVQAIKDAEEGLFHLKRARLLREADLVLHGCSSRTEDVQAEPLDPADVEPEPLEDQRYSVGSKCRFRYNDGRWYDGRIIGLEETDSAKVSFLRPTSENMLMCKFFLQQRCRFGTNCRLSHGIDVPLSFLKKYVPTSWEQSLVGSTIWALSDDKVGIWRKAELGSWDDEHRMGEVVFRDDGSSAKLGIEAMTLSEYAQMSDEEDSDFSSEQSDSSDYEEDSPHGVGFDESNNLKRGVRNDTVVFAKWENHTRGIASKMMANMGYREGMGLGASGQGILDPVAVKVLPPKQSLDHAVELHQSKEGKDEKQRKKRSRGGRRKREKKFAEAVRAARDEEESRPDVFSLINNQLRVHHETINGSSPKMQQHKGSVKEKKISRRDLVAYDDEIKDLRVRVVKLEEMVNRNKNEKAVFEAAMRKLNETRKALAQAEAAQASASHEVSSREKEKRWLKF
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEcccccccEEEEEcccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEccccccEEcccccccccccccccEEEEcccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccHccccccccccccccccHHHHHccccEEEcccccccEEEEEEEEEcccccEEEEEEccccccccccccHccccccccccccccccEEEEHHHHcccccccHHHHcccccEEEEEccccccEEEEEEEEcccccEEEEEEEEccccccEEccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccHccHHHHccHHHHHHHHHcccccccccccccccEEccEEEEEccccccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHcccccccccccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEc
MADEEERVLENQLEQQLNEQRDSLTALndavasdpfnpELQEVLKELVQAIKDAEEGLFHLKRARLLREADLVLHGcssrtedvqaepldpadvepepledqrysvgskcrfryndgrwydgriigleetdsakvsflrptsenmLMCKFFLQQrcrfgtncrlshgidvplsflkkyvptsweqslVGSTiwalsddkvgiwrkaelgswddehrmgevvfrddgssaklGIEAMTLSEyaqmsdeedsdfsseqsdssdyeedsphgvgfdesnnlkrgvrnDTVVFAKWENHTRGIASKMMANMgyregmglgasgqgildpvavkvlppkqsldHAVELhqskegkdekqrkkrsrggrrkREKKFAEAVRAArdeeesrpdvFSLINNQLrvhhetingsspkmqqhkgsvkekkisrrdlvayddEIKDLRVRVVKLEEMVNRNKNEKAVFEAAMRKLNETRKALAQAEAAQASASHEVSSREKEKRWLKF
MADEEERVLENQLEQQLNEQRDSLTALNDAVASDPFNPELQEVLKELVQAIKDAEEGLFHLKRARLLREADLVLHGCSsrtedvqaepldpadvepepledqrysvgskcrfryndgRWYDGRiigleetdsakVSFLRPTSENMLMCKFFLQQRCRFGTNCRLSHGIDVPLSFLKKYVPTSWEQSLVGstiwalsddkVGIWRKAElgswddehrmgevvfrddgssaKLGIEAMTLSEYAQMSDEEDSDFSSEQSDSSDYEEDSphgvgfdesnnlkrgvrndtvvfakwenhtrgIASKMMANMGYREGMGLGASGQGILDPVAVKVLPPKQSLDHAvelhqskegkdekqrkkrsrggrrkrekkfAEAVraardeeesrpdvfSLINNQLRVHHEtingsspkmqqhkgsvkekkisrrdlvayddeikdLRVRVVKLeemvnrnknekaVFEAAMRKLNETRKALAQAEAaqasashevssrekekrwlkf
MADeeervlenqleqqlneqrDSLTALNDAVASDPFNPELQEVLKELVQAIKDAEEGLFHLKRARLLREADLVLHGCSSRTEDVQAEPLDPADVEPEPLEDQRYSVGSKCRFRYNDGRWYDGRIIGLEETDSAKVSFLRPTSENMLMCKFFLQQRCRFGTNCRLSHGIDVPLSFLKKYVPTSWEQSLVGSTIWALSDDKVGIWRKAELGSWDDEHRMGEVVFRDDGSSAKLGIEAMTLSEYAQMsdeedsdfsseqsdssdyeedsPHGVGFDESNNLKRGVRNDTVVFAKWENHTRGIASKMMANMGYREGMGLGASGQGILDPVAVKVLPPKQSLDHAVELHQSKEGKDekqrkkrsrggrrkrekkfaeavraardeeesrPDVFSLINNQLRVHHETINGSSPKMQQHKGSVKEKKISRRDLVAYDDEIKDLRVRVVKLEEMVNRNKNEKAVFEAAMRKLNETRKalaqaeaaqasashevssREKEKRWLKF
****************************************QEVLKELVQAIKDAEEGLFHLKRARLLREADLVLHGC***************************SVGSKCRFRYNDGRWYDGRIIGLEETDSAKVSFLRPTSENMLMCKFFLQQRCRFGTNCRLSHGIDVPLSFLKKYVPTSWEQSLVGSTIWALSDDKVGIWRKAELGSWDDEHRMGEVVFR**********************************************************VRNDTVVFAKWENHTRGIASKMMANMGYREGMGLGASGQGILDPVAVKVL**********************************************************************************************LVAYDDEIKDLRVRVVKLEEMV**************************************************
******R****QLEQQLNEQRDSLTALND**********LQEVLKELVQAIKDAEEGLFHLKR******************************************VGSKCRFRYNDGRWYDGRIIGLEETDSAKVSFLRPTSENMLMCKFFLQQRCRFGTNCRLSHGIDVPLSFLKKYVPTSW**SLVGSTIWALSDDKVGIWRKAELG**********************************************************************************************************************************************************************************FSL*****************************************************************************************************KRWLKF
**************QQLNEQRDSLTALNDAVASDPFNPELQEVLKELVQAIKDAEEGLFHLKRARLLREADLVLHGCSSRTEDVQAEPLDPADVEPEPLEDQRYSVGSKCRFRYNDGRWYDGRIIGLEETDSAKVSFLRPTSENMLMCKFFLQQRCRFGTNCRLSHGIDVPLSFLKKYVPTSWEQSLVGSTIWALSDDKVGIWRKAELGSWDDEHRMGEVVFRDDGSSAKLGIEAMTLSEYA**************************GVGFDESNNLKRGVRNDTVVFAKWENHTRGIASKMMANMGYREGMGLGASGQGILDPVAVKVLPPKQSLDHAVELH****************************************PDVFSLINNQLRVHHETING****************ISRRDLVAYDDEIKDLRVRVVKLEEMVNRNKNEKAVFEAAMRKLNETRK****************************
*****ERVLENQLEQQLNEQRDSLTALNDAVASDPFNPELQEVLKELVQAIKDAEEGLFHLKRARLLREADLVLHG*********************PLEDQRYSVGSKCRFRYNDGRWYDGRIIGLEETDSAKVSFLRPTSENMLMCKFFLQQRCRFGTNCRLSHGIDVPLSFLKKYVPTSWEQSLVGSTIWALSDDKVGIWRKAELGSWDDEHRMGEVVFRDDGSSAKLGIEAMTLS*************************************************FAKWENHTRGIASKMMANMGYREGMGLGASGQGILDPVAVKVLPPKQSLDHAVELHQSKE************************************PDVFS*****LR********************KEKKISRRDLVAYDDEIKDLRVRVVKLEEMVNRNKNEKAVFEAAMRKLNETRKALAQAEAAQASASHEVS*R*********
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MADEEERVLxxxxxxxxxxxxxxxxxxxxxVASDPFxxxxxxxxxxxxxxxxxxxxxLFHLKRARLLREADLVLHGCSSRTEDVQAEPLDPADVEPEPLEDQRYSVGSKCRFRYNDGRWYDGRIIGLEETDSAKVSFLRPTSENMLMCKFFLQQRCRFGTNCRLSHGIDVPLSFLKKYVPTSWEQSLVGSTIWALSDDKVGIWRKAELGSWDDEHRMGEVVFRDDGSSAKLGIEAMTLSEYAQMSDEEDSDFSSEQSDSSDYEEDSPHGVGFDESNNLKRGVRNDTVVFAKWENHTRGIASKMMANMGYREGMGLGASGQGILDPVAVKVLPPKQSLDHAVELHQSKEGKDEKQRKKRSRGGRRKREKKFAEAVRAARDEEESRPDVFSLINNQLRVHHETINGSSPKMQQHKGSVKEKKISRRDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVSSREKEKRWLKF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query497 2.2.26 [Sep-21-2011]
Q6K687504 Zinc finger CCCH domain-c yes no 0.983 0.970 0.577 1e-153
Q9SK49497 Zinc finger CCCH domain-c yes no 0.977 0.977 0.594 1e-148
B4KH32509 Zinc finger CCCH-type wit N/A no 0.706 0.689 0.275 2e-28
B3MPC0511 Zinc finger CCCH-type wit N/A no 0.696 0.677 0.269 1e-27
B4M9F7508 Zinc finger CCCH-type wit N/A no 0.706 0.690 0.270 1e-27
Q7PYU6543 Zinc finger CCCH-type wit yes no 0.754 0.690 0.268 2e-27
B4NYQ2513 Zinc finger CCCH-type wit N/A no 0.696 0.674 0.269 9e-27
B4Q8A7513 Zinc finger CCCH-type wit N/A no 0.704 0.682 0.264 1e-26
B4HWD7513 Zinc finger CCCH-type wit N/A no 0.704 0.682 0.264 2e-26
Q17CQ8512 Zinc finger CCCH-type wit N/A no 0.599 0.582 0.299 4e-26
>sp|Q6K687|C3H18_ORYSJ Zinc finger CCCH domain-containing protein 18 OS=Oryza sativa subsp. japonica GN=Os02g0793000 PE=2 SV=1 Back     alignment and function desciption
 Score =  541 bits (1395), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 292/506 (57%), Positives = 376/506 (74%), Gaps = 17/506 (3%)

Query: 2   ADEEERVLENQLEQQLNEQRDSLTALNDAVASDPFNPELQEVLKELVQAIKDAEEGLFHL 61
            ++E   +E QLE  L EQR SLTA+++A+A+DP N +L EV +EL+ AIKDAEEGL HL
Sbjct: 6   GEDEAASIELQLEHHLQEQRASLTAVDEALAADPSNADLLEVHEELLAAIKDAEEGLLHL 65

Query: 62  KRARLLREADLVLHG--CSSRTEDVQAEPLDPADVEPEPLEDQRYSVGSKCRFRYNDGRW 119
           KR+RL+++ D +      +S   +V  +P  P DVEPEPLE Q +SVGSKCRFR+ DGRW
Sbjct: 66  KRSRLVKQIDEIFPNQEPTSEAPEVAVDP--PDDVEPEPLEPQEFSVGSKCRFRHKDGRW 123

Query: 120 YDGRIIGLEETDSAKVSFLRPTSENMLMCKFFLQQRCRFGTNCRLSHGIDVPLSFLKKYV 179
           Y+G +IGLE +  A++SFL PTSENM MCKFFLQQRCRFG+NCRLSHGI +P+  LK++ 
Sbjct: 124 YNGCVIGLEGSSDARISFLTPTSENMSMCKFFLQQRCRFGSNCRLSHGIVIPILSLKQFT 183

Query: 180 PTSWEQSLVGSTIWALSDDKVGIWRKAELGSWDDEHRMGEVVFRDDGSSAKLGIEAMTLS 239
           PT W+QSLVGS+I A S    G+WR+AEL SWDD+ ++G+VVF+DDGSSA+L  +++++S
Sbjct: 184 PTRWQQSLVGSSILAASGHHSGLWRRAELESWDDDLKVGQVVFQDDGSSARLPSDSLSIS 243

Query: 240 EYAQMSDEE----DSDFSSEQSDSSDYEEDSPH-GVGFDESNNLKRGVRNDTVVFAKWEN 294
           EYA  SDE+     SD  S+ S+  D E++S H G+G  ES NL  GV+ +T +FAKWE+
Sbjct: 244 EYADESDEDGEGSSSDEGSDFSEDGDQEDESVHQGLGLLESKNLS-GVQTETAIFAKWEH 302

Query: 295 HTRGIASKMMANMGYREGMGLGASGQGILDPVAVKVLPPKQSLDHAVELHQSKEGKDEKQ 354
           HTRG+ASKMMA MGYREGMGLG SGQG+LDP+ VKVLPPKQSLDHAV   +  +      
Sbjct: 303 HTRGVASKMMAKMGYREGMGLGVSGQGMLDPIPVKVLPPKQSLDHAVAASEVNDSVGPG- 361

Query: 355 RKKRSRGGRRKREKKFAEAVRAARDEEESRPDVFSLINNQLRVHHETINGSSPKMQQH-- 412
            KKRSRGG+RKREKKFAE  RAA+ EEE R  VFS IN+QL V  +   GS+ K ++   
Sbjct: 362 -KKRSRGGKRKREKKFAEQARAAKAEEEER-SVFSFINSQL-VGQDVAEGSAVKSKKDSS 418

Query: 413 -KGSVKEKKISRRDLVAYDDEIKDLRVRVVKLEEMVNRNKNEKAVFEAAMRKLNETRKAL 471
            + +   KK  RR L+AYDDE+K+LR RV KLEEM+ RN+ +KA +EAA +KL +TRKAL
Sbjct: 419 GEANGHAKKEDRRSLLAYDDEVKELRSRVEKLEEMMKRNRKDKAFYEAASKKLKQTRKAL 478

Query: 472 AQAEAAQASASHEVSSREKEKRWLKF 497
           A AEA  ASA++ V+ +EKEK+WLKF
Sbjct: 479 ADAEATHASATNAVARKEKEKKWLKF 504

Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q9SK49|C3H22_ARATH Zinc finger CCCH domain-containing protein 22 OS=Arabidopsis thaliana GN=At2g24830 PE=2 SV=1 Back     alignment and function description
>sp|B4KH32|ZGPAT_DROMO Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila mojavensis GN=GI17578 PE=3 SV=1 Back     alignment and function description
>sp|B3MPC0|ZGPAT_DROAN Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila ananassae GN=GF15731 PE=3 SV=1 Back     alignment and function description
>sp|B4M9F7|ZGPAT_DROVI Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila virilis GN=GJ17921 PE=3 SV=1 Back     alignment and function description
>sp|Q7PYU6|ZGPAT_ANOGA Zinc finger CCCH-type with G patch domain-containing protein OS=Anopheles gambiae GN=AGAP002111 PE=3 SV=4 Back     alignment and function description
>sp|B4NYQ2|ZGPAT_DROYA Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila yakuba GN=GE18884 PE=3 SV=1 Back     alignment and function description
>sp|B4Q8A7|ZGPAT_DROSI Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila simulans GN=GD23643 PE=3 SV=1 Back     alignment and function description
>sp|B4HWD7|ZGPAT_DROSE Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila sechellia GN=GM17832 PE=3 SV=1 Back     alignment and function description
>sp|Q17CQ8|ZGPAT_AEDAE Zinc finger CCCH-type with G patch domain-containing protein OS=Aedes aegypti GN=AAEL004458 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query497
356567208492 PREDICTED: zinc finger CCCH domain-conta 0.989 1.0 0.684 0.0
356527087495 PREDICTED: zinc finger CCCH domain-conta 0.995 1.0 0.672 0.0
449493289497 PREDICTED: LOW QUALITY PROTEIN: zinc fin 0.997 0.997 0.680 0.0
449441846497 PREDICTED: zinc finger CCCH domain-conta 0.997 0.997 0.682 0.0
224141991495 predicted protein [Populus trichocarpa] 0.993 0.997 0.722 0.0
225430539496 PREDICTED: zinc finger CCCH domain-conta 0.995 0.997 0.712 0.0
255548674495 zinc finger protein, putative [Ricinus c 0.991 0.995 0.677 1e-172
357137393508 PREDICTED: zinc finger CCCH domain-conta 0.989 0.968 0.584 1e-161
115449171504 Os02g0793000 [Oryza sativa Japonica Grou 0.983 0.970 0.577 1e-151
125541437504 hypothetical protein OsI_09252 [Oryza sa 0.983 0.970 0.573 1e-150
>gi|356567208|ref|XP_003551813.1| PREDICTED: zinc finger CCCH domain-containing protein 18-like [Glycine max] Back     alignment and taxonomy information
 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/497 (68%), Positives = 402/497 (80%), Gaps = 5/497 (1%)

Query: 1   MADEEERVLENQLEQQLNEQRDSLTALNDAVASDPFNPELQEVLKELVQAIKDAEEGLFH 60
           M  EEERVLENQLE QL EQRDSL+A+  A+ SDP NPEL  V +ELVQAIKDAEEGL H
Sbjct: 1   MGSEEERVLENQLELQLQEQRDSLSAIGQALLSDPTNPELLAVHEELVQAIKDAEEGLLH 60

Query: 61  LKRARLLREADLVLHGCSSRTEDVQAEPLDPADVEPEPLEDQRYSVGSKCRFRYNDGRWY 120
           LKRARLL+EAD VLH  +  TE+ + EPLD  DVEPEPLED+ YSVGSKCRFR+ DGRWY
Sbjct: 61  LKRARLLQEADSVLHNTNIFTEEEKVEPLDSTDVEPEPLEDKCYSVGSKCRFRHKDGRWY 120

Query: 121 DGRIIGLEETDSAKVSFLRPTSENMLMCKFFLQQRCRFGTNCRLSHGIDVPLSFLKKYVP 180
           +G+++ L+    AKVSFL PTSENMLMCKFFLQQRCRFG+NCRLSHG+DV LS LKKYVP
Sbjct: 121 NGQVVQLDNA-VAKVSFLTPTSENMLMCKFFLQQRCRFGSNCRLSHGLDVQLSALKKYVP 179

Query: 181 TSWEQSLVGSTIWALSDDKVGIWRKAELGSWDDEHRMGEVVFRDDGSSAKLGIEAMTLSE 240
           T W+QSLVGS+IWA+S    G WR+AEL S D++  +G+VVFRD+GSS K+G E M LSE
Sbjct: 180 TIWKQSLVGSSIWAVSTANAGTWREAELESLDEKAGVGQVVFRDNGSSVKVGAEEMALSE 239

Query: 241 YAQMSDEEDSDFSSEQSDSSDYEEDSPHGVGFDESNNLKRGVRNDTVVFAKWENHTRGIA 300
           +A+MSD E SD S  QSDSSDYEE+ P G+GF ES NL+RG++ +T  FA WENHTRGIA
Sbjct: 240 HAEMSDLE-SDSSLVQSDSSDYEEEEPQGLGFLESTNLRRGIQTETATFATWENHTRGIA 298

Query: 301 SKMMANMGYREGMGLGASGQGILDPVAVKVLPPKQSLDHAVELHQSKEGKDEKQRKKRSR 360
           SKMMANMGYREGMGLG +GQG+LDP+ VKVLPPKQSLDHA+E H+ +    ++ +KKRSR
Sbjct: 299 SKMMANMGYREGMGLGVTGQGMLDPIPVKVLPPKQSLDHALESHKREG---KEGKKKRSR 355

Query: 361 GGRRKREKKFAEAVRAARDEEESRPDVFSLINNQLRVHHETINGSSPKMQQHKGSVKEKK 420
           GG+RKREKKFAE  RAA++EEES  DVF+LINN L +H E     S K QQ KGS + KK
Sbjct: 356 GGKRKREKKFAEVNRAAKEEEESASDVFALINNHLAMHSEAFGSGSMKKQQSKGSEEGKK 415

Query: 421 ISRRDLVAYDDEIKDLRVRVVKLEEMVNRNKNEKAVFEAAMRKLNETRKALAQAEAAQAS 480
           + RR LVAY++E+KDL++RV KLE +VN N+ EKAV+E AMRKLNETRKALA AEA  AS
Sbjct: 416 VDRRALVAYEEEVKDLKMRVEKLEHIVNANRKEKAVYEGAMRKLNETRKALADAEAVHAS 475

Query: 481 ASHEVSSREKEKRWLKF 497
           AS+ V+S+EKEKRWLKF
Sbjct: 476 ASNSVTSKEKEKRWLKF 492

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356527087|ref|XP_003532145.1| PREDICTED: zinc finger CCCH domain-containing protein 18-like [Glycine max] Back     alignment and taxonomy information
>gi|449493289|ref|XP_004159245.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 18-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449441846|ref|XP_004138693.1| PREDICTED: zinc finger CCCH domain-containing protein 18-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224141991|ref|XP_002324344.1| predicted protein [Populus trichocarpa] gi|222865778|gb|EEF02909.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225430539|ref|XP_002285580.1| PREDICTED: zinc finger CCCH domain-containing protein 18 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255548674|ref|XP_002515393.1| zinc finger protein, putative [Ricinus communis] gi|223545337|gb|EEF46842.1| zinc finger protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357137393|ref|XP_003570285.1| PREDICTED: zinc finger CCCH domain-containing protein 18-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|115449171|ref|NP_001048365.1| Os02g0793000 [Oryza sativa Japonica Group] gi|75125501|sp|Q6K687.1|C3H18_ORYSJ RecName: Full=Zinc finger CCCH domain-containing protein 18; Short=OsC3H18 gi|47497138|dbj|BAD19187.1| zinc finger (CCCH-type) protein-like [Oryza sativa Japonica Group] gi|47497585|dbj|BAD19655.1| zinc finger (CCCH-type) protein-like [Oryza sativa Japonica Group] gi|113537896|dbj|BAF10279.1| Os02g0793000 [Oryza sativa Japonica Group] gi|215740743|dbj|BAG97399.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|125541437|gb|EAY87832.1| hypothetical protein OsI_09252 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query497
TAIR|locus:2047319497 AT2G24830 [Arabidopsis thalian 0.935 0.935 0.503 5.8e-121
UNIPROTKB|C0HAV3527 zgpat "Zinc finger CCCH-type w 0.275 0.259 0.303 7.6e-21
UNIPROTKB|Q8N5A5531 ZGPAT "Zinc finger CCCH-type w 0.591 0.553 0.290 5.9e-20
RGD|1310801507 Zgpat "zinc finger, CCCH-type 0.567 0.556 0.283 1.5e-19
RGD|1562795610 Lime1 "Lck interacting transme 0.567 0.462 0.283 2.5e-19
UNIPROTKB|Q28H71514 zgpat "Zinc finger CCCH-type w 0.120 0.116 0.466 5.5e-18
MGI|MGI:2449939511 Zgpat "zinc finger, CCCH-type 0.505 0.491 0.285 2.1e-17
UNIPROTKB|Q17QX2513 ZGPAT "Zinc finger CCCH-type w 0.118 0.115 0.491 2.9e-17
FB|FBgn0032169513 CG4709 [Drosophila melanogaste 0.299 0.290 0.290 5.2e-17
UNIPROTKB|C5IJB0513 ZGPAT "Zinc finger CCCH-type w 0.118 0.115 0.491 7.7e-17
TAIR|locus:2047319 AT2G24830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1190 (424.0 bits), Expect = 5.8e-121, P = 5.8e-121
 Identities = 245/487 (50%), Positives = 312/487 (64%)

Query:    22 DSLTALNDAVASDPFNPELQEVLKELVQAIKDAEEGLFHLKRARLLREADLVLHGCSSRT 81
             +SL+++++A+ SDP NPEL  V +EL+ AIK+ EEGL HLKRARLL EAD+VL+G +   
Sbjct:    22 ESLSSIDEALLSDPSNPELLSVHEELLSAIKEVEEGLLHLKRARLLEEADIVLNGLN--- 78

Query:    82 EDVQAEPLDPADVEPEPLEDQRYSVGSKCRFRYNDGRWYDGRIIGLEETDSAKVSFLRPT 141
              D   +P     +EPE  E+++   GSKCRFR+ DGRWY+GRIIG E +DSAK+SFL PT
Sbjct:    79 HDAGVKP---EHLEPEKTEEKKDLDGSKCRFRHTDGRWYNGRIIGFEGSDSAKISFLTPT 135

Query:   142 SENMLMCKFFLQQRCRFGTNCRLSHGIDVPLSFLKKYVPTSWEQSLVGSTIWALSDDKVG 201
             SE+M++CKFF+QQRCRFG++CR SHG+DVP+S LK Y  T W+Q +VGS IWA+S  K  
Sbjct:   136 SESMMICKFFMQQRCRFGSSCRSSHGLDVPISSLKNYEQTEWKQLMVGSKIWAVSGSKYD 195

Query:   202 IWRKAELGSWDDEHRMGEVVFRDDGSSAKLGIEAMTLSEYAQMXXXXX----------XX 251
             IWRKAEL SWDDE ++G VVFRDD SSAKLG +++ LSEYAQM                 
Sbjct:   196 IWRKAELESWDDELQVGGVVFRDDKSSAKLGSDSLALSEYAQMTDDDGEEEEEEDEQQSA 255

Query:   252 XXXXXXXXXXXXXXXPHGVGFDESNNLKRGVRNDTVVFAKWENHTRGIASKMMANMGYRE 311
                            P G+GF ES NL RGV+ DT +FAKWENHTRGIASKMMA+MGYRE
Sbjct:   256 SDSEDSVSSDYDEGSPQGIGFLESTNLPRGVQTDTALFAKWENHTRGIASKMMASMGYRE 315

Query:   312 GMGLGASGQGILDPVAVKVLPPKQSLDHAVELHQSKEGKDXXXXXXXXXXXXXXXXXXXX 371
             GMGLG SGQGIL+P+ VKVLP K+SLD+A+E  ++ E K                     
Sbjct:   316 GMGLGVSGQGILNPILVKVLPAKRSLDYALEHIRNGECKSEKQKKKRSRGGKRKRGKKFA 375

Query:   372 XXXXXXXXXXXXXPDVFSLINNQL-RVHHETINGSSPKMQQHKGSVKEKKISRRDLVAYD 430
                          PD+FSLIN Q+    HE ++  S K +Q+KG V      R+ LV Y 
Sbjct:   376 EAAKAAKQEEESKPDLFSLINEQIFPTRHEKVHSESVKNRQNKGPV-----DRKALVEYQ 430

Query:   431 DEIKDLRVRVVKLEEMVNRNKNEKAVFEAAMRKLNETRKXXXXXXXXXXXXXXXXXXREK 490
             DE++DL++ ++KLE+MVNRNK +  V EAA R+L E RK                  +E 
Sbjct:   431 DEVRDLKLEMLKLEQMVNRNKKDLVVSEAATRRLKEVRKALASTLACQAAASNAIVSKEN 490

Query:   491 EKRWLKF 497
             EK+WLKF
Sbjct:   491 EKKWLKF 497
GO:0003676 "nucleic acid binding" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0008270 "zinc ion binding" evidence=IEA
UNIPROTKB|C0HAV3 zgpat "Zinc finger CCCH-type with G patch domain-containing protein" [Salmo salar (taxid:8030)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N5A5 ZGPAT "Zinc finger CCCH-type with G patch domain-containing protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1310801 Zgpat "zinc finger, CCCH-type with G patch domain" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1562795 Lime1 "Lck interacting transmembrane adaptor 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q28H71 zgpat "Zinc finger CCCH-type with G patch domain-containing protein" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
MGI|MGI:2449939 Zgpat "zinc finger, CCCH-type with G patch domain" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q17QX2 ZGPAT "Zinc finger CCCH-type with G patch domain-containing protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
FB|FBgn0032169 CG4709 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|C5IJB0 ZGPAT "Zinc finger CCCH-type with G patch domain-containing protein" [Ovis aries (taxid:9940)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SK49C3H22_ARATHNo assigned EC number0.59440.97780.9778yesno
Q6K687C3H18_ORYSJNo assigned EC number0.57700.98390.9702yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query497
pfam0158545 pfam01585, G-patch, G-patch domain 3e-12
smart0044347 smart00443, G_patch, glycine rich nucleic binding 4e-12
smart0035627 smart00356, ZnF_C3H1, zinc finger 1e-04
smart0033357 smart00333, TUDOR, Tudor domain 4e-04
>gnl|CDD|144978 pfam01585, G-patch, G-patch domain Back     alignment and domain information 
 Score = 60.6 bits (148), Expect = 3e-12
 Identities = 16/44 (36%), Positives = 26/44 (59%)

Query: 296 TRGIASKMMANMGYREGMGLGASGQGILDPVAVKVLPPKQSLDH 339
           T  I  K++  MG++ G GLG + QGI +P+  K+ P ++ L  
Sbjct: 1   TSNIGFKLLQKMGWKPGQGLGKNEQGITEPIEAKIRPDRKGLGA 44

This domain is found in a number of RNA binding proteins, and is also found in proteins that contain RNA binding domains. This suggests that this domain may have an RNA binding function. This domain has seven highly conserved glycines. Length = 45
>gnl|CDD|197727 smart00443, G_patch, glycine rich nucleic binding domain Back     alignment and domain information
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger Back     alignment and domain information
>gnl|CDD|197660 smart00333, TUDOR, Tudor domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 497
KOG2185486 consensus Predicted RNA-processing protein, contai 100.0
KOG3026262 consensus Splicing factor SPF30 [RNA processing an 99.83
KOG2184 767 consensus Tuftelin-interacting protein TIP39, cont 99.69
PF0158545 G-patch: G-patch domain; InterPro: IPR000467 The D 99.39
smart0044347 G_patch glycine rich nucleic binding domain. A pre 99.17
KOG2809326 consensus Telomerase elongation inhibitor/RNA matu 98.66
PF06003264 SMN: Survival motor neuron protein (SMN); InterPro 98.45
KOG3673 845 consensus FtsJ-like RNA methyltransferase [RNA pro 98.29
PF1265677 G-patch_2: DExH-box splicing factor binding site 98.19
cd0450848 TUDOR Tudor domains are found in many eukaryotic o 98.18
PF15057124 DUF4537: Domain of unknown function (DUF4537) 98.18
KOG0965988 consensus Predicted RNA-binding protein, contains 98.15
cd0450848 TUDOR Tudor domains are found in many eukaryotic o 98.14
smart0033357 TUDOR Tudor domain. Domain of unknown function pre 98.14
smart0033357 TUDOR Tudor domain. Domain of unknown function pre 98.1
KOG1996378 consensus mRNA splicing factor [RNA processing and 98.04
PF0064227 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si 97.88
PF06003264 SMN: Survival motor neuron protein (SMN); InterPro 97.83
KOG2384223 consensus Major histocompatibility complex protein 97.82
smart0035627 ZnF_C3H1 zinc finger. 97.47
PF09038122 53-BP1_Tudor: Tumour suppressor p53-binding protei 97.39
KOG1994268 consensus Predicted RNA binding protein, contains 97.34
KOG4327218 consensus mRNA splicing protein SMN (survival moto 97.34
smart0074361 Agenet Tudor-like domain present in plant sequence 97.04
KOG0154573 consensus RNA-binding protein RBM5 and related pro 96.97
KOG4315 455 consensus G-patch nucleic acid binding protein [Ge 96.76
PF1171755 Tudor-knot: RNA binding activity-knot of a chromod 96.32
PF0946555 LBR_tudor: Lamin-B receptor of TUDOR domain; Inter 95.71
smart0074361 Agenet Tudor-like domain present in plant sequence 95.56
PF0946555 LBR_tudor: Lamin-B receptor of TUDOR domain; Inter 95.36
PF1460819 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type 95.23
PF07039130 DUF1325: SGF29 tudor-like domain; InterPro: IPR010 95.22
PF00567121 TUDOR: Tudor domain; InterPro: IPR008191 There are 95.15
PF0564168 Agenet: Agenet domain; InterPro: IPR008395 This do 94.46
KOG3038264 consensus Histone acetyltransferase SAGA associate 93.92
KOG2185486 consensus Predicted RNA-processing protein, contai 93.63
KOG4368757 consensus Predicted RNA binding protein, contains 93.43
PF1171755 Tudor-knot: RNA binding activity-knot of a chromod 92.39
PF00567121 TUDOR: Tudor domain; InterPro: IPR008191 There are 92.03
KOG1677332 consensus CCCH-type Zn-finger protein [General fun 91.22
KOG1039344 consensus Predicted E3 ubiquitin ligase [Posttrans 90.82
PF15057124 DUF4537: Domain of unknown function (DUF4537) 90.33
KOG2138 883 consensus Predicted RNA binding protein, contains 90.22
PF07039130 DUF1325: SGF29 tudor-like domain; InterPro: IPR010 90.15
KOG4327218 consensus mRNA splicing protein SMN (survival moto 89.28
KOG2039875 consensus Transcriptional coactivator p100 [Transc 89.23
KOG1763343 consensus Uncharacterized conserved protein, conta 87.88
KOG3026262 consensus Splicing factor SPF30 [RNA processing an 87.26
PLN00104450 MYST -like histone acetyltransferase; Provisional 86.8
KOG1994268 consensus Predicted RNA binding protein, contains 86.57
PF09038122 53-BP1_Tudor: Tumour suppressor p53-binding protei 86.05
KOG2039875 consensus Transcriptional coactivator p100 [Transc 86.04
KOG1677332 consensus CCCH-type Zn-finger protein [General fun 82.1
PF1485353 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe 81.55
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=8.4e-104  Score=798.97  Aligned_cols=459  Identities=46%  Similarity=0.697  Sum_probs=369.7

Q ss_pred             HHHHHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHhhhhhhHHH-----------HHHHhhhhcCCCCCCCc
Q 010937           17 LNEQRDSLTALNDAVAS---DPFNPELQEVLKELVQAIKDAEEGLFHLKRAR-----------LLREADLVLHGCSSRTE   82 (497)
Q Consensus        17 L~~Yk~QLqQVe~aL~~---DP~n~ELl~Lk~DL~elI~LTee~L~~lk~s~-----------ll~e~d~~~~~~~~~~e   82 (497)
                      |++|++||.+|++||..   +.+-.||++|+.||.|||.||++++..+....           ++...|.....-+.   
T Consensus         1 lEny~aQll~veqaieq~~d~s~r~ellqlk~dl~ELlsLteellaaide~p~D~l~de~re~~~E~~D~~aag~~~---   77 (486)
T KOG2185|consen    1 LENYDAQLLLVEQAIEQKEDLSSRDELLQLKPDLPELLSLTEELLAAIDEVPDDGLLDEKRERLLEEADIVAAGLNH---   77 (486)
T ss_pred             CcchHHHHHHHHHHHHhhcchhHHHHHHHhCCcHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHhhhhhhhhccccC---
Confidence            46899999999999984   33367899999999999999998877654321           11111111111011   


Q ss_pred             ccCCCCCCCCCCCCCCccccCCCCCCeeEEEeC--CCc-eeeeEEEeeccCCceEEEEecCCCccccchhhhhhccccCC
Q 010937           83 DVQAEPLDPADVEPEPLEDQRYSVGSKCRFRYN--DGR-WYDGRIIGLEETDSAKVSFLRPTSENMLMCKFFLQQRCRFG  159 (497)
Q Consensus        83 d~~~~p~~~~~~e~~~~~~~~~~vG~kC~A~~~--dG~-~Y~A~I~~i~~~~~vrV~Fl~pt~~~~~pC~~fl~g~C~f~  159 (497)
                      ++.   ..|...+++..++...++|+||+|||+  ||. ||||+|++++++..|||+|+||||++|+||+|||+|.|||+
T Consensus        78 ~s~---t~p~~e~~e~~e~~~~L~GsKcsaph~ss~gl~yHna~I~g~E~sarvRVlfl~PTh~sMkpC~ffLeg~CRF~  154 (486)
T KOG2185|consen   78 DSG---TKPEHEEPEKTEEKKDLDGSKCSAPHTSSRGLYYHNARIIGFEGSARVRVLFLTPTHESMKPCKFFLEGRCRFG  154 (486)
T ss_pred             Ccc---cCcccccchhcchhhhccCCcccccccCCccceecceeEEeeccccceEEEeecCcchhhccchHhhccccccC
Confidence            011   123333333345677899999999997  674 45999999999999999999999999999999999999999


Q ss_pred             CccccCCCcccCcccccccCCCCcccccCCCeEEEeecCCCCceEeeEEeeeeCCCceEEEEEeCCCCceeecccccccc
Q 010937          160 TNCRLSHGIDVPLSFLKKYVPTSWEQSLVGSTIWALSDDKVGIWRKAELGSWDDEHRMGEVVFRDDGSSAKLGIEAMTLS  239 (497)
Q Consensus       160 ~~Cr~sHg~~v~~~~L~~~~~pd~~~l~~Gs~~la~~~~~dglW~~a~i~~~d~~~~~~~V~f~~~g~~~~~~~d~~~~~  239 (497)
                      +|||||||.+|++++||+|++|||++|++|+.|||+  +.++|||.|+|++||.++++|+|+|.....++.. .|.++|+
T Consensus       155 enCRfSHG~~V~lsslr~yq~pD~s~L~~gs~vlak--~~sdiWh~ari~~vd~~~q~vkv~~~g~~~s~ke-gD~~~~~  231 (486)
T KOG2185|consen  155 ENCRFSHGLDVPLSSLRNYQQPDWSQLMVGSKVLAK--SGSDIWHKARIESVDDELQVVKVVFRGDKSSAKE-GDSLALS  231 (486)
T ss_pred             cccccccCcccchhhcccCCCccHHHHhhcCeeeee--ccchhhhhhheeeeccceeEEEEEeccchhhhhc-ccccCcc
Confidence            999999999999999999999999999999999999  6699999999999999999999999876655554 5999999


Q ss_pred             ccccCCCCCCCC----------CCCCCCCCCCcCCCCCCcccccccccccCCccCccccccccccCcCcHHHHHHHHcCC
Q 010937          240 EYAQMSDEEDSD----------FSSEQSDSSDYEEDSPHGVGFDESNNLKRGVRNDTVVFAKWENHTRGIASKMMANMGY  309 (497)
Q Consensus       240 e~~~~~d~~~~~----------~~s~~s~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~we~~t~gig~klm~kmG~  309 (497)
                      +|+.+.|.|.++          ++|+||.++|.++.+...+|++.++++++  ++++..||.||.||+|||+|||+||||
T Consensus       232 ~y~e~TdqD~dse~~~~e~~s~d~s~Ds~eSd~d~~~e~~~g~~~~~~l~~--~t~t~~fakWe~hTRGIgsKLM~kMGY  309 (486)
T KOG2185|consen  232 EYAEMTDQDGDSEEEEDEQQSADDSEDSVESDYDEGSEQGIGFLESTNLPR--QTDTALFAKWENHTRGIGSKLMAKMGY  309 (486)
T ss_pred             cccccccccccchhhhhhhcccCCcccchhhcccccchhcccccccccccc--cccHHHHhhhccccchHHHHHHHHhch
Confidence            998776655433          23344555666666667888888888764  678999999999999999999999999


Q ss_pred             CCCCCCCCCCCCccccccccccCCCccccccccccccccCCchHhhhhhccccchhhhHHHHHHHHHhhhhccCCCCcee
Q 010937          310 REGMGLGASGQGILDPVAVKVLPPKQSLDHAVELHQSKEGKDEKQRKKRSRGGRRKREKKFAEAVRAARDEEESRPDVFS  389 (497)
Q Consensus       310 ~~G~GLG~~~qG~~~pi~~~~~~~~~gLg~~~e~~~~~~~~~~~~~~k~~r~~k~k~~~k~ae~~~~~k~~~~~~~~VFd  389 (497)
                      +.|+|||++++|||+||.|+|.|.+++||.||+..++.         ++.|++|||+.++.++..++.+. ++++.+||+
T Consensus       310 ~~G~GLG~~g~GiV~pI~a~vlp~grSLDecme~kqk~---------~r~r~gkrk~~rkrk~~aKa~~r-ee~r~dvF~  379 (486)
T KOG2185|consen  310 REGMGLGVSGQGIVNPILAKVLPAGRSLDECMEEKQKK---------KRSRGGKRKRGRKRKEAAKAAKR-EEERKDVFS  379 (486)
T ss_pred             hhccccCcCCCccccchhhhhccCCCCHHHHHHHHHHh---------hccccccccchhhhhhhccccCC-ccccccHHH
Confidence            99999999999999999999999999999999876543         34677777777766666666543 334667999


Q ss_pred             eccccccccccccCCCCCcccccccchhhhhhhhHHhhhcHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Q 010937          390 LINNQLRVHHETINGSSPKMQQHKGSVKEKKISRRDLVAYDDEIKDLRVRVVKLEEMVNRNKNEKAVFEAAMRKLNETRK  469 (497)
Q Consensus       390 fiN~~L~~~~~~~~~~~~~~~~~~~~~~~~k~~~r~l~~~~e~i~~l~~~i~kL~e~l~Rn~~~~~~~~~i~~kL~~~~~  469 (497)
                      |||.+|.+.......+..+..+.+. ....|....+||+++++|++|++++.||+++|.||++|+++.++++++|.++++
T Consensus       380 fiNekl~g~~~~~~~~~rkkt~e~a-g~s~Ktl~~~lv~~edeirrlkrdm~klkq~l~RN~gd~v~s~~lqe~L~ev~~  458 (486)
T KOG2185|consen  380 FINEKLFGTRHEKVHSERKKTRENA-GPSDKTLGAALVEYEDEIRRLKRDMLKLKQMLNRNKGDLVVSEALQERLKEVRK  458 (486)
T ss_pred             HHHHHhcccccccccchhhhhhhhc-CcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence            9999999854322211111111111 123344445599999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHhHHhhhhcccC
Q 010937          470 ALAQAEAAQASASHEVSSREKEKRWLKF  497 (497)
Q Consensus       470 ~L~~~~a~~~si~~~~~~~~~~k~~~~f  497 (497)
                      +|++++|++++|+++|.+|+.+|||+.|
T Consensus       459 ~Lasl~aqea~ls~eq~sr~s~kKm~eF  486 (486)
T KOG2185|consen  459 ALASLLAQEAALSNEQVSRESEKKMLEF  486 (486)
T ss_pred             HHHHHHHHHHHHhHHHhhhhhhhhhccC
Confidence            9999999999999999999999999999

>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification] Back     alignment and domain information
>KOG2184 consensus Tuftelin-interacting protein TIP39, contains G-patch domain [RNA processing and modification] Back     alignment and domain information
>PF01585 G-patch: G-patch domain; InterPro: IPR000467 The D111/G-patch domain [] is a short conserved region of about 40 amino acids which occurs in a number of putative RNA-binding proteins, including tumor suppressor and DNA-damage-repair proteins, suggesting that this domain may have an RNA binding function Back     alignment and domain information
>smart00443 G_patch glycine rich nucleic binding domain Back     alignment and domain information
>KOG2809 consensus Telomerase elongation inhibitor/RNA maturation protein PINX1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins Back     alignment and domain information
>KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification] Back     alignment and domain information
>PF12656 G-patch_2: DExH-box splicing factor binding site Back     alignment and domain information
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains Back     alignment and domain information
>PF15057 DUF4537: Domain of unknown function (DUF4537) Back     alignment and domain information
>KOG0965 consensus Predicted RNA-binding protein, contains SWAP and G-patch domains [General function prediction only] Back     alignment and domain information
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains Back     alignment and domain information
>smart00333 TUDOR Tudor domain Back     alignment and domain information
>smart00333 TUDOR Tudor domain Back     alignment and domain information
>KOG1996 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins Back     alignment and domain information
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only] Back     alignment and domain information
>smart00356 ZnF_C3H1 zinc finger Back     alignment and domain information
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix Back     alignment and domain information
>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification] Back     alignment and domain information
>KOG4327 consensus mRNA splicing protein SMN (survival motor neuron) [RNA processing and modification] Back     alignment and domain information
>smart00743 Agenet Tudor-like domain present in plant sequences Back     alignment and domain information
>KOG0154 consensus RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains [General function prediction only] Back     alignment and domain information
>KOG4315 consensus G-patch nucleic acid binding protein [General function prediction only] Back     alignment and domain information
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F Back     alignment and domain information
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane Back     alignment and domain information
>smart00743 Agenet Tudor-like domain present in plant sequences Back     alignment and domain information
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane Back     alignment and domain information
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type Back     alignment and domain information
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes Back     alignment and domain information
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins [] Back     alignment and domain information
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO [] Back     alignment and domain information
>KOG3038 consensus Histone acetyltransferase SAGA associated factor SGF29 [General function prediction only] Back     alignment and domain information
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification] Back     alignment and domain information
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only] Back     alignment and domain information
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F Back     alignment and domain information
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins [] Back     alignment and domain information
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF15057 DUF4537: Domain of unknown function (DUF4537) Back     alignment and domain information
>KOG2138 consensus Predicted RNA binding protein, contains G-patch domain [RNA processing and modification] Back     alignment and domain information
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes Back     alignment and domain information
>KOG4327 consensus mRNA splicing protein SMN (survival motor neuron) [RNA processing and modification] Back     alignment and domain information
>KOG2039 consensus Transcriptional coactivator p100 [Transcription] Back     alignment and domain information
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only] Back     alignment and domain information
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification] Back     alignment and domain information
>PLN00104 MYST -like histone acetyltransferase; Provisional Back     alignment and domain information
>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification] Back     alignment and domain information
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix Back     alignment and domain information
>KOG2039 consensus Transcriptional coactivator p100 [Transcription] Back     alignment and domain information
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query497
4ii1_A167 Crystal Structure Of The Zinc Finger Of Zgpat Lengt 3e-08
>pdb|4II1|A Chain A, Crystal Structure Of The Zinc Finger Of Zgpat Length = 167 Back     alignment and structure 
Iteration: 1

 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 119 WYDGRIIGLEETD----SAKVSFLRPTSENMLMCKFFLQQRCRFGTNCRLSHGIDVPLSF 174
           +++  ++G EE +      +V +L PT +++  C FFL+ +CRF  NCR SHG  V L  
Sbjct: 46  YHNAMVVGTEEAEDGSAGVRVLYLYPTHKSLKPCPFFLEGKCRFKENCRFSHGQVVSLDE 105
Query: 175 LKKYVPTSWEQSLVGSTIWALSDDKVGIWRKAELGSWDDEH 215
           L+ +          GS   A   D  G+W  A +   D+ +
Sbjct: 106 LRPFQDPDLSSLQAGSACLAKHQD--GLWHAARITDVDNGY 144

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query497
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
2rhk_C72 Cleavage and polyadenylation specificity factor su 3e-04
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77 Back     alignment and structure
 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 140 PTSENMLMCKFFLQQRCRFGTNCRLSHGIDV 170
            + E  ++CK +L+  C+ G  C   H  D+
Sbjct: 5   SSGEKTVVCKHWLRGLCKKGDQCEFLHEYDM 35
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query497
4a4f_A64 SurviVal of motor neuron-related-splicing factor; 98.88
1mhn_A59 SurviVal motor neuron protein; SMN, SMA, spinal mu 98.86
1g5v_A88 SurviVal motor neuron protein 1; mRNA processing, 98.78
2equ_A74 PHD finger protein 20-like 1; tudor domain, struct 98.78
3s6w_A54 Tudor domain-containing protein 3; methylated argi 98.78
3p8d_A67 Medulloblastoma antigen MU-MB-50.72; tudor domain, 98.72
3qii_A85 PHD finger protein 20; tudor domain, structural ge 98.7
1mhn_A59 SurviVal motor neuron protein; SMN, SMA, spinal mu 98.68
4a4f_A64 SurviVal of motor neuron-related-splicing factor; 98.67
1g5v_A88 SurviVal motor neuron protein 1; mRNA processing, 98.67
3pnw_C77 Tudor domain-containing protein 3; FAB, structural 98.62
3s6w_A54 Tudor domain-containing protein 3; methylated argi 98.61
2d9t_A78 Tudor domain-containing protein 3; structural geno 98.53
2ldm_A81 Uncharacterized protein; PHF20, tudor domain, epig 97.89
3pnw_C77 Tudor domain-containing protein 3; FAB, structural 98.47
2d9t_A78 Tudor domain-containing protein 3; structural geno 98.42
2equ_A74 PHD finger protein 20-like 1; tudor domain, struct 98.35
3fdr_A94 Tudor and KH domain-containing protein; TDRD2, str 98.22
2ldm_A81 Uncharacterized protein; PHF20, tudor domain, epig 97.4
1ssf_A156 Transformation related protein 53 binding protein 98.09
2diq_A110 Tudor and KH domain-containing protein; tudor doma 97.87
3qii_A85 PHD finger protein 20; tudor domain, structural ge 97.86
2eqj_A66 Metal-response element-binding transcription facto 97.86
3p8d_A67 Medulloblastoma antigen MU-MB-50.72; tudor domain, 97.85
3fdr_A94 Tudor and KH domain-containing protein; TDRD2, str 97.78
2g3r_A123 Tumor suppressor P53-binding protein 1; tandem tud 97.77
2qqr_A118 JMJC domain-containing histone demethylation prote 97.77
2xdp_A123 Lysine-specific demethylase 4C; oxidoreductase, hi 97.73
2l8d_A66 Lamin-B receptor; DNA binding protein; NMR {Gallus 97.68
2diq_A110 Tudor and KH domain-containing protein; tudor doma 97.63
2dig_A68 Lamin-B receptor; tudor domain, integral nuclear e 97.55
3h8z_A128 FragIle X mental retardation syndrome-related Pro; 97.5
4hcz_A58 PHD finger protein 1; protein-peptide complex, tud 97.5
3dlm_A213 Histone-lysine N-methyltransferase setdb1; setdb1_ 97.39
4b9x_A226 TDRD1, tudor domain-containing protein 1; replicat 97.38
3ntk_A169 Maternal protein tudor; tudor domain, OB-fold, GER 97.37
2eqk_A85 Tudor domain-containing protein 4; structural geno 97.3
4b9w_A201 TDRD1, tudor domain-containing protein 1; replicat 97.3
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 97.28
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 97.27
4b9w_A201 TDRD1, tudor domain-containing protein 1; replicat 97.26
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 97.16
4b9x_A226 TDRD1, tudor domain-containing protein 1; replicat 97.02
2rhk_C72 Cleavage and polyadenylation specificity factor su 97.01
2m0o_A79 PHD finger protein 1; tudor domain, H3K36ME3 bindi 97.01
2l8d_A66 Lamin-B receptor; DNA binding protein; NMR {Gallus 96.96
2e5q_A63 PHD finger protein 19; tudor domain, isoform B, st 96.95
2lcd_A118 AT-rich interactive domain-containing protein 4A; 96.01
3ntk_A169 Maternal protein tudor; tudor domain, OB-fold, GER 96.9
2e5p_A68 Protein PHF1, PHD finger protein 1; tudor domain, 96.9
2dig_A68 Lamin-B receptor; tudor domain, integral nuclear e 96.88
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 96.86
2eqj_A66 Metal-response element-binding transcription facto 96.83
3db3_A161 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 96.78
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 96.76
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 96.76
2eqk_A85 Tudor domain-containing protein 4; structural geno 96.72
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 96.68
3bdl_A570 Staphylococcal nuclease domain-containing protein 96.63
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 96.55
2xk0_A69 Polycomb protein PCL; transcription, aromatic CAGE 96.54
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 96.5
2d9m_A69 Zinc finger CCCH-type domain containing protein 7A 96.27
4hcz_A58 PHD finger protein 1; protein-peptide complex, tud 96.26
2e5p_A68 Protein PHF1, PHD finger protein 1; tudor domain, 96.04
2e5q_A63 PHD finger protein 19; tudor domain, isoform B, st 95.93
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 95.87
3bdl_A570 Staphylococcal nuclease domain-containing protein 95.84
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 95.49
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 95.48
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 95.46
2rhk_C72 Cleavage and polyadenylation specificity factor su 95.45
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 95.4
2e5s_A98 Otthump00000018578; ZF-CCCHX2 domain, muscleblind- 95.37
3dlm_A213 Histone-lysine N-methyltransferase setdb1; setdb1_ 95.25
2e5s_A98 Otthump00000018578; ZF-CCCHX2 domain, muscleblind- 95.2
2m0o_A79 PHD finger protein 1; tudor domain, H3K36ME3 bindi 95.05
3d2n_A83 Muscleblind-like protein 1; tandem zinc finger dom 94.8
2biv_A243 SCML2 protein, sex COMB on midleg-like protein 2; 94.74
2qqr_A118 JMJC domain-containing histone demethylation prote 94.43
3sd4_A69 PHD finger protein 20; tudor domain, transcription 94.19
2lcc_A76 AT-rich interactive domain-containing protein 4A; 94.09
3d2n_A83 Muscleblind-like protein 1; tandem zinc finger dom 93.85
2f5k_A102 MORF-related gene 15 isoform 1; beta barrel, gene 93.78
3mea_A180 SAGA-associated factor 29 homolog; structural geno 93.44
2ro0_A92 Histone acetyltransferase ESA1; HAT, chromodomain, 93.29
2eko_A87 Histone acetyltransferase htatip; chromo domain, h 93.27
2r58_A265 Polycomb protein SCM; MBT repeat, sex COMB on midl 93.18
2xk0_A69 Polycomb protein PCL; transcription, aromatic CAGE 92.94
3mp6_A522 MBP, SGF29, maltose-binding periplasmic protein, l 92.83
1wgs_A133 MYST histone acetyltransferase 1; tudor domain, MY 92.63
2rnz_A94 Histone acetyltransferase ESA1; HAT, chromodomain, 92.58
2g3r_A123 Tumor suppressor P53-binding protein 1; tandem tud 92.56
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 92.35
2xdp_A123 Lysine-specific demethylase 4C; oxidoreductase, hi 92.01
1oz2_A331 Lethal(3)malignant brain tumor-like protein; prope 91.64
3u9g_A229 Zinc finger CCCH-type antiviral protein 1; zinc fi 90.0
2eqm_A88 PHD finger protein 20-like 1; structural genomics, 89.99
2lcc_A76 AT-rich interactive domain-containing protein 4A; 88.87
1ssf_A156 Transformation related protein 53 binding protein 88.83
1wgs_A133 MYST histone acetyltransferase 1; tudor domain, MY 88.53
2eqm_A88 PHD finger protein 20-like 1; structural genomics, 88.24
3oa6_A110 MALE-specific lethal 3 homolog; chromodomain, MSL3 87.47
2ro0_A92 Histone acetyltransferase ESA1; HAT, chromodomain, 87.33
2lrq_A85 Protein MRG15, NUA4 complex subunit EAF3 homolog; 86.99
3m9q_A101 Protein MALE-specific lethal-3; chromodomain, MSL3 87.02
3sd4_A69 PHD finger protein 20; tudor domain, transcription 86.7
3mea_A180 SAGA-associated factor 29 homolog; structural geno 85.92
2bud_A92 Males-absent on the first protein; transferase, MO 85.39
2eko_A87 Histone acetyltransferase htatip; chromo domain, h 85.37
3u1l_A240 PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 83.85
2f5k_A102 MORF-related gene 15 isoform 1; beta barrel, gene 83.68
3u9g_A229 Zinc finger CCCH-type antiviral protein 1; zinc fi 83.56
3h8z_A128 FragIle X mental retardation syndrome-related Pro; 83.0
3m9p_A110 MALE-specific lethal 3 homolog; chromodomain, MSL3 82.47
3pmi_A134 PWWP domain-containing protein MUM1; structural ge 82.05
2fc6_A50 Nuclear, target of EGR1, member 1; structure genom 81.41
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A* Back     alignment and structure
Probab=98.88  E-value=2.2e-09  Score=84.59  Aligned_cols=55  Identities=29%  Similarity=0.558  Sum_probs=46.9

Q ss_pred             ccCCCCCCeeEEEeC-CCceeeeEEEeecc-CCceEEEEecCCCccccchhhhhhccccCCCccccCCCcccCccccccc
Q 010937          101 DQRYSVGSKCRFRYN-DGRWYDGRIIGLEE-TDSAKVSFLRPTSENMLMCKFFLQQRCRFGTNCRLSHGIDVPLSFLKKY  178 (497)
Q Consensus       101 ~~~~~vG~kC~A~~~-dG~~Y~A~I~~i~~-~~~vrV~Fl~pt~~~~~pC~~fl~g~C~f~~~Cr~sHg~~v~~~~L~~~  178 (497)
                      ...|.+|+.|+|+|+ ||.||+|+|.++.+ ++.+.|+|+.                  ||+.      ..|+++.||+.
T Consensus         6 ~~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvd------------------YGn~------e~V~~~~Lrpl   61 (64)
T 4a4f_A            6 THSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAG------------------YGNA------EVTPLLNLKPV   61 (64)
T ss_dssp             SSCCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETT------------------TTEE------EEEEGGGEECC
T ss_pred             CCCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEe------------------cCCE------EEEeHHHcEeC
Confidence            467999999999997 99999999999987 4689999988                  5643      67888888875


Q ss_pred             C
Q 010937          179 V  179 (497)
Q Consensus       179 ~  179 (497)
                      .
T Consensus        62 ~   62 (64)
T 4a4f_A           62 E   62 (64)
T ss_dssp             S
T ss_pred             C
Confidence            4
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A* Back     alignment and structure
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A* Back     alignment and structure
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens} Back     alignment and structure
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens} Back     alignment and structure
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A* Back     alignment and structure
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A* Back     alignment and structure
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens} Back     alignment and structure
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A* Back     alignment and structure
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1 Back     alignment and structure
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens} Back     alignment and structure
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens} Back     alignment and structure
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1 Back     alignment and structure
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens} Back     alignment and structure
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1 Back     alignment and structure
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens} Back     alignment and structure
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus} Back     alignment and structure
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens} Back     alignment and structure
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A Back     alignment and structure
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A* Back     alignment and structure
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens} Back     alignment and structure
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus} Back     alignment and structure
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N* Back     alignment and structure
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens} Back     alignment and structure
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens} Back     alignment and structure
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus} Back     alignment and structure
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A* Back     alignment and structure
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus} Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Back     alignment and structure
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus} Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Back     alignment and structure
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus} Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Back     alignment and structure
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens} Back     alignment and structure
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus} Back     alignment and structure
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2lcd_A AT-rich interactive domain-containing protein 4A; tudor domain, RBBP1, transcription; NMR {Homo sapiens} Back     alignment and structure
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A* Back     alignment and structure
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus} Back     alignment and structure
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A* Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Back     alignment and structure
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Back     alignment and structure
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Back     alignment and structure
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster} Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Back     alignment and structure
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens} Back     alignment and structure
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Back     alignment and structure
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Back     alignment and structure
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens} Back     alignment and structure
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens} Back     alignment and structure
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Back     alignment and structure
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A Back     alignment and structure
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A* Back     alignment and structure
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A Back     alignment and structure
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens} Back     alignment and structure
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Back     alignment and structure
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A Back     alignment and structure
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A Back     alignment and structure
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A* Back     alignment and structure
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster} Back     alignment and structure
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A* Back     alignment and structure
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3 Back     alignment and structure
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Back     alignment and structure
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens} Back     alignment and structure
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A* Back     alignment and structure
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A Back     alignment and structure
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens} Back     alignment and structure
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1 Back     alignment and structure
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3 Back     alignment and structure
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A Back     alignment and structure
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A* Back     alignment and structure
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster} Back     alignment and structure
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0 Back     alignment and structure
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A Back     alignment and structure
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A Back     alignment and structure
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3 Back     alignment and structure
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A Back     alignment and structure
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A Back     alignment and structure
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N* Back     alignment and structure
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens} Back     alignment and structure
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 497
d2hqxa190 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human ( 7e-04
d1m9oa_40 g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475 0.002
d1rgoa136 g.66.1.1 (A:151-186) Butyrate response factor 2 (T 0.002
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: P100 co-activator, SND1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (84), Expect = 7e-04
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 106 VGSKCRFRYNDGRWYDGRIIGLEETDSAKVSFL 138
            G  C  ++ DG WY  R+  +E      V ++
Sbjct: 28  RGEFCIAKFVDGEWYRARVEKVESPAKIHVFYI 60
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40 Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query497
d1mhna_59 Survival motor neuron protein 1, smn {Human (Homo 98.77
d1mhna_59 Survival motor neuron protein 1, smn {Human (Homo 98.69
d2d9ta160 Tudor domain-containing protein 3, TDRD3 {Mouse (M 98.65
d2d9ta160 Tudor domain-containing protein 3, TDRD3 {Mouse (M 98.41
d2hqxa190 P100 co-activator, SND1 {Human (Homo sapiens) [Tax 98.18
d2hqxa190 P100 co-activator, SND1 {Human (Homo sapiens) [Tax 97.8
d2diqa197 Tudor and KH domain-containing protein TDRKH {Huma 97.7
d2diqa197 Tudor and KH domain-containing protein TDRKH {Huma 97.66
d1m9oa_40 Tristetraproline (ttp, tis11, nup475) {Mouse (Mus 97.29
d1rgoa136 Butyrate response factor 2 (Tis11D) {Human (Homo s 97.15
d1rgoa234 Butyrate response factor 2 (Tis11D) {Human (Homo s 96.99
d2qqra159 Jumonji domain-containing protein 2A {Human (Homo 96.54
d2cqea229 Zinc finger CCCH domain-containing protein C19orf7 96.52
d2cqea156 Zinc finger CCCH domain-containing protein C19orf7 96.45
d1wgsa_133 Probable histone acetyltransferase MYST1 {Mouse (M 95.98
d2qqra159 Jumonji domain-containing protein 2A {Human (Homo 94.79
d2qqra256 Jumonji domain-containing protein 2A {Human (Homo 92.32
d2f5ka183 Mortality factor 4-like protein 1, MRG15 {Human (H 90.06
d1wgsa_133 Probable histone acetyltransferase MYST1 {Mouse (M 89.75
d2g3ra153 p53-binding protein 1, 53BP1 {Human (Homo sapiens) 89.11
d2buda188 Putative histone acetyltransferase MOF {Fruit fly 85.74
d2diga155 Lamin-b receptor {Human (Homo sapiens) [TaxId: 960 83.44
d2g3ra153 p53-binding protein 1, 53BP1 {Human (Homo sapiens) 83.12
d2diga155 Lamin-b receptor {Human (Homo sapiens) [TaxId: 960 82.86
>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Survival motor neuron protein 1, smn
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=3.3e-09  Score=80.45  Aligned_cols=53  Identities=26%  Similarity=0.454  Sum_probs=43.6

Q ss_pred             cCCCCCCeeEEEeC-CCceeeeEEEeeccC-CceEEEEecCCCccccchhhhhhccccCCCccccCCCcccCccccccc
Q 010937          102 QRYSVGSKCRFRYN-DGRWYDGRIIGLEET-DSAKVSFLRPTSENMLMCKFFLQQRCRFGTNCRLSHGIDVPLSFLKKY  178 (497)
Q Consensus       102 ~~~~vG~kC~A~~~-dG~~Y~A~I~~i~~~-~~vrV~Fl~pt~~~~~pC~~fl~g~C~f~~~Cr~sHg~~v~~~~L~~~  178 (497)
                      ..|.||+.|+|+|+ ||.||.|+|..+..+ ..+.|+|+-                  ||      +-..|+++.|++-
T Consensus         2 ~~wkvG~~C~A~~s~Dg~wYRA~I~~v~~~~~~~~V~fvD------------------YG------n~e~V~~~~l~~~   56 (59)
T d1mhna_           2 QQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTG------------------YG------NREEQNLSDLLSP   56 (59)
T ss_dssp             CCCCTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETT------------------TT------EEEEEEGGGCBCT
T ss_pred             CcCCcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEe------------------CC------CEEEEEHHHCcCC
Confidence            36999999999998 999999999998654 469999987                  56      3377888888753
>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qqra1 b.34.9.1 (A:897-955) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2qqra1 b.34.9.1 (A:897-955) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qqra2 b.34.9.1 (A:956-1011) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1, MRG15 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2g3ra1 b.34.9.1 (A:1485-1537) p53-binding protein 1, 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2buda1 b.34.13.3 (A:367-454) Putative histone acetyltransferase MOF {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2diga1 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g3ra1 b.34.9.1 (A:1485-1537) p53-binding protein 1, 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2diga1 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure