Citrus Sinensis ID: 010956

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------
MDHHSIFSINFTKHSRMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQFPDTAGSIVSIHVDSDIMSLDGRQPLETDAEIKEDGKLHVTVRKSNASRSDIFSRRSQGLSSTTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHADFYSMMAGGRSSNFGATDVYGLSATSRGPTPRPSNYEDEANNANKSRFHHYPAPNPGMFSPTNNNTRVNASANKKAINGQAQQKGEDGAGAGAGARDLHMFVWSSSASPVSDVFGGHDYNNNDHKEVRLAVSPQGGKGEGGGGHEEYMEREDFSFGNRRGLESNNNEGEKVGDEKPKAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGL
cccccEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccccccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccEEEEccccccccccccccccccHHHHcccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccEEEcccccccEEEEEEccccEEEEEEEEcccccccccccccccccccccccccccccEEEEEcccccccccccccccccHHHHHcccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccHcccccccccccccHEEEEcccccccccccccHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
mdhhsifsinftkhsrmygefsGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLiseqfpdtagsivsihvdsdimsldgrqpletdaeikedgKLHVTvrksnasrsdifsrrsqglssttprpsnltnaEIYSlqssrnptprgssfnhadfysmmaggrssnfgatdvyglsatsrgptprpsnyedeannanksrfhhypapnpgmfsptnnntrvnASANKKAIngqaqqkgedgagagagarDLHMFVwsssaspvsdvfgghdynnndhkevrlavspqggkgeggggheeymeredfsfgnrrglesnnnegekvgdekpkampptsVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAalpqgivpFVFAkeynvhpdilsTGVIFGMLIALPITLVYYILLGL
MDHHSIFSINFTKHSRMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQFPDTAGSIVSIHVDSDIMSLDGRQPLEtdaeikedgklhvtvrksnasrsdifsrrsqglssttprpsnltNAEIYSlqssrnptprgsSFNHADFYSMMAGGRSSNFGATDVYGLSAtsrgptprpsnYEDEANNANKSRFHHYPAPNPGMFSPTNNNTRVNASANKKAINGQAQQKGEDGAGAGAGARDLHMFVWSSSASPVSDVFGGHDYNNNDHKEvrlavspqggkgegggghEEYMEREDFsfgnrrglesnnnegekvgdekpkampptsVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGL
MDHHSIFSINFTKHSRMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQFPDTAGSIVSIHVDSDIMSLDGRQPLETDAEIKEDGKLHVTVRKSNASRSDIFSRRSQGLSSTTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHADFYSMMAGGRSSNFGATDVYGLSATSRGPTPRPSNYEDEANNANKSRFHHYPAPNPGMFSPTNNNTRVNASANKKAINgqaqqkgedgagagagaRDLHMFVWSSSASPVSDVFGGHDYNNNDHKEVRLAVSPQggkgeggggheeymereDFSFGNRRGLESNNNEGEKVGDEKPKAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGL
*****IFSINFTKHSRMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQFPDTAGSIVSIHVDSDI******************************************************************************************************************************************************************************LHMFVWS*******************************************************************************VMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILL**
***HSIFSINFTKHSRMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQFPDTAGSIVSIHVDSDI******************GKL*********************************************************F***************************************************************************************************************************************************************************************TRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGL
MDHHSIFSINFTKHSRMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQFPDTAGSIVSIHVDSDIMSLDGRQPLETDAEIKEDGKLHVTV***********************RPSNLTNAEIYSLQSSRNPTPRGSSFNHADFYSMMAGGRSSNFGATDVYGLSA*************DEANNANKSRFHHYPAPNPGMFSPTNNNTRVNASANKKAI**************GAGARDLHMFVWSSSASPVSDVFGGHDYNNNDHKEVRLAVSP**********HEEYMEREDFSFGNRRGLESN*************AMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGL
***HSIFSINFTKHSRMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQFPDTAGSIVSIHVDSDIMSLDGRQPLETDAEIKEDGKLHVTVRKS*******************PRPSNLTNAEIYSLQSSRNPTPRGSSFNHADFYSMMAGGRSSNFGATDVYGLS*************************H**********************************************RDLHMFVWSSSA*P*SDVFGGHDYNNNDHKEVRLAVSP********************************************AMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGL
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHii
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoo
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SSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
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MDHHSIFSINFTKHSRMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQFPDTAGSIVSIHVDSDIMSLDGRQPLETDAEIKEDGKLHVTVRKSNASRSDIFSRRSQGLSSTTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHADFYSMMAGGRSSNFGATDVYGLSATSRGPTPRPSNYEDEANNANKSRFHHYPAPNPGMFSPTNNNTRVNASANKKAINGQAQQKGEDGAGAGAGARDLHMFVWSSSASPVSDVFGGHDYNNNDHKEVRLAVSPQGGKGEGGGGHEEYMEREDFSFGNRRGLESNNNEGEKVGDEKPKAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query497 2.2.26 [Sep-21-2011]
Q9C6B8622 Auxin efflux carrier comp yes no 0.925 0.739 0.694 0.0
Q67UL3592 Probable auxin efflux car yes no 0.895 0.751 0.700 0.0
Q5SMQ9595 Auxin efflux carrier comp no no 0.909 0.759 0.698 0.0
Q8RWZ6616 Auxin efflux carrier comp no no 0.925 0.746 0.612 1e-162
Q9S7Z8640 Auxin efflux carrier comp no no 0.943 0.732 0.608 1e-160
Q940Y5619 Auxin efflux carrier comp no no 0.945 0.759 0.611 1e-158
Q9LU77647 Auxin efflux carrier comp no no 0.941 0.723 0.551 1e-143
Q5VP70618 Probable auxin efflux car no no 0.871 0.700 0.553 1e-142
Q651V6630 Probable auxin efflux car no no 0.913 0.720 0.534 1e-140
P0C0X5554 Probable auxin efflux car no no 0.814 0.731 0.539 1e-125
>sp|Q9C6B8|PINI_ARATH Auxin efflux carrier component 1 OS=Arabidopsis thaliana GN=PIN1 PE=1 SV=1 Back     alignment and function desciption
 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/520 (69%), Positives = 401/520 (77%), Gaps = 60/520 (11%)

Query: 17  MYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQFPDTAGSIVSIHVDSDIMS 76
           MYG FSG LMVQIVVLQCIIWYTLMLF+FEYRGA+LLISEQFPDTAGSIVSIHVDSDIMS
Sbjct: 124 MYGNFSGDLMVQIVVLQCIIWYTLMLFLFEYRGAKLLISEQFPDTAGSIVSIHVDSDIMS 183

Query: 77  LDGRQPLETDAEIKEDGKLHVTVRKSNASRSDIFSRRSQGLSSTTPRPSNLTNAEIYSLQ 136
           LDGRQPLET+AEIKEDGKLHVTVR+SNASRSDI+SRRSQGLS+T PRPSNLTNAEIYSLQ
Sbjct: 184 LDGRQPLETEAEIKEDGKLHVTVRRSNASRSDIYSRRSQGLSAT-PRPSNLTNAEIYSLQ 242

Query: 137 SSRNPTPRGSSFNHADFYSMMA--GGRSSNFGATD-VYGLSATSRGPTPRPSNYEDEANN 193
           SSRNPTPRGSSFNH DFYSMMA  GGR+SNFG  + V+G    S+GPTPRPSNYE++   
Sbjct: 243 SSRNPTPRGSSFNHTDFYSMMASGGGRNSNFGPGEAVFG----SKGPTPRPSNYEEDGGP 298

Query: 194 AN---------KSRFH------------HYPAPNPGMFSPTNNNTRVNASANKKAINGQA 232
           A            RFH            HYPAPNPGMFSP        A+     + G  
Sbjct: 299 AKPTAAGTAAGAGRFHYQSGGSGGGGGAHYPAPNPGMFSPNTGGGGGTAAKGNAPVVGGK 358

Query: 233 QQKGEDGAGAGAGARDLHMFVWSSSASPVSDVFGG------HDYNN--NDH-KEVRLAVS 283
           +Q G          RDLHMFVWSSSASPVSDVFGG       DY+   NDH K+V+++V 
Sbjct: 359 RQDGN--------GRDLHMFVWSSSASPVSDVFGGGGGNHHADYSTATNDHQKDVKISV- 409

Query: 284 PQGGKGEGGGGHEEYMEREDFSFGNRR------GLESNNNEGEKVGDEKPKAMPPTSVMT 337
           PQG   +      +Y+ERE+FSFGN+         +  NN   K    + K MPPTSVMT
Sbjct: 410 PQGNSND-----NQYVEREEFSFGNKDDDSKVLATDGGNNISNKT--TQAKVMPPTSVMT 462

Query: 338 RLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSL 397
           RLILIMVWRKLIRNPN+YSSL G+ WSL+SF+WN++MPA++AKSISILSDAGLGMAMFSL
Sbjct: 463 RLILIMVWRKLIRNPNSYSSLFGITWSLISFKWNIEMPALIAKSISILSDAGLGMAMFSL 522

Query: 398 GLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGI 457
           GLFMAL PRIIACGN  AAF+ A+RF+ GPAVM  AS AVGLRGVLLHVAI+QAALPQGI
Sbjct: 523 GLFMALNPRIIACGNRRAAFAAAMRFVVGPAVMLVASYAVGLRGVLLHVAIIQAALPQGI 582

Query: 458 VPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGL 497
           VPFVFAKEYNVHPDILST VIFGMLIALPITL+YYILLGL
Sbjct: 583 VPFVFAKEYNVHPDILSTAVIFGMLIALPITLLYYILLGL 622
Acts as a component of the auxin efflux carrier. Seems to be involved in the basipetal auxin transport. Mediates the formation of auxin gradient which is required to ensure correct organogenesis. Coordinated polar localization of PIN1 is directly regulated by the vesicle trafficking process and apical-basal PIN1 polarity also depends on the phosphorylation of conserved serine residues by PID kinase. The ARF-GEF protein GNOM is required for the correct recycling of PIN1 between the plasma membrane and endosomal compartments.
Arabidopsis thaliana (taxid: 3702)
>sp|Q67UL3|PIN1C_ORYSJ Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica GN=PIN1C PE=2 SV=1 Back     alignment and function description
>sp|Q5SMQ9|PIN1_ORYSJ Auxin efflux carrier component 1 OS=Oryza sativa subsp. japonica GN=PIN1 PE=2 SV=1 Back     alignment and function description
>sp|Q8RWZ6|PIN4_ARATH Auxin efflux carrier component 4 OS=Arabidopsis thaliana GN=PIN4 PE=1 SV=1 Back     alignment and function description
>sp|Q9S7Z8|PIN3_ARATH Auxin efflux carrier component 3 OS=Arabidopsis thaliana GN=PIN3 PE=1 SV=1 Back     alignment and function description
>sp|Q940Y5|PIN7_ARATH Auxin efflux carrier component 7 OS=Arabidopsis thaliana GN=PIN7 PE=1 SV=2 Back     alignment and function description
>sp|Q9LU77|PIN2_ARATH Auxin efflux carrier component 2 OS=Arabidopsis thaliana GN=PIN2 PE=1 SV=2 Back     alignment and function description
>sp|Q5VP70|PIN3A_ORYSJ Probable auxin efflux carrier component 3a OS=Oryza sativa subsp. japonica GN=PIN3A PE=2 SV=1 Back     alignment and function description
>sp|Q651V6|PIN2_ORYSJ Probable auxin efflux carrier component 2 OS=Oryza sativa subsp. japonica GN=PIN2 PE=2 SV=1 Back     alignment and function description
>sp|P0C0X5|PIN1B_ORYSJ Probable auxin efflux carrier component 1b OS=Oryza sativa subsp. japonica GN=PIN1B PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query497
225456149 604 PREDICTED: probable auxin efflux carrier 0.947 0.779 0.826 0.0
359491030596 PREDICTED: probable auxin efflux carrier 0.933 0.778 0.822 0.0
225456151 606 PREDICTED: probable auxin efflux carrier 0.947 0.777 0.821 0.0
224118654 609 auxin efflux carrier component [Populus 0.947 0.773 0.830 0.0
224135561 614 auxin efflux carrier component [Populus 0.949 0.768 0.814 0.0
10441744 614 PIN1-like auxin transport protein [Popul 0.949 0.768 0.812 0.0
33339150 607 auxin efflux carrier [Momordica charanti 0.943 0.772 0.826 0.0
33339148 607 AEC1 [Momordica charantia] 0.943 0.772 0.824 0.0
89511766 606 auxin efflux carrier [Lupinus albus] 0.945 0.775 0.791 0.0
449439457 617 PREDICTED: auxin efflux carrier componen 0.935 0.753 0.805 0.0
>gi|225456149|ref|XP_002282220.1| PREDICTED: probable auxin efflux carrier component 1c isoform 1 [Vitis vinifera] gi|147816248|emb|CAN64182.1| hypothetical protein VITISV_007800 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  805 bits (2078), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/491 (82%), Positives = 436/491 (88%), Gaps = 20/491 (4%)

Query: 17  MYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQFPDTAGSIVSIHVDSDIMS 76
           MYGE+SGSLMVQIVVLQCIIWYTLMLF+FEYRGA++LISEQFPDTAGSIVSIHVDSDIMS
Sbjct: 124 MYGEYSGSLMVQIVVLQCIIWYTLMLFLFEYRGAKMLISEQFPDTAGSIVSIHVDSDIMS 183

Query: 77  LDGRQPLETDAEIKEDGKLHVTVRKSNASRSDIFSRRSQGLSSTTPRPSNLTNAEIYSLQ 136
           LDGRQ LET+AEIKEDGKLHVTVRKSNASRSDIFSRRSQGLSSTTPRPSNLTNAEIYSLQ
Sbjct: 184 LDGRQALETEAEIKEDGKLHVTVRKSNASRSDIFSRRSQGLSSTTPRPSNLTNAEIYSLQ 243

Query: 137 SSRNPTPRGSSFNHADFYSMMAGGRSSNFGATDVYGLSATSRGPTPRPSNYEDEANNANK 196
           SSRNPTPRGSSFNH DFYSM+AGGR+SNFG++DVYGL+ TSRGPTPRPSNYE++ NN NK
Sbjct: 244 SSRNPTPRGSSFNHTDFYSMVAGGRNSNFGSSDVYGLT-TSRGPTPRPSNYEEDGNNNNK 302

Query: 197 SRFH-------HYPAPNPGMFSPTNNNTRVNASANKKAINGQAQQKGEDGAGAGAGARDL 249
            RFH       HYPAPNPGMFSPT +    +A+A KK  NGQAQQK ++G       RDL
Sbjct: 303 IRFHYHAQGGNHYPAPNPGMFSPTGSKNVASAAAAKKP-NGQAQQKPDEGT------RDL 355

Query: 250 HMFVWSSSASPVSDVFGGHDYNNNDHK-EVRLAVSPQGGKGEGG-GGHEEYMEREDFSFG 307
           HMFVWSSSASPVSDVFGGH+Y  ND   + R+AVSP  GK EG     E+Y+ER+DFSFG
Sbjct: 356 HMFVWSSSASPVSDVFGGHEYGANDQNVKERVAVSP--GKVEGHRENQEDYLERDDFSFG 413

Query: 308 NR-RGLESNNNEGEKVGDEKPKAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLV 366
           NR    E NN+EGEKVGD K KAMPP SVMTRLILIMVWRKLIRNPNTYSSLIGL+WSLV
Sbjct: 414 NRVLAQEMNNHEGEKVGDGKAKAMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLV 473

Query: 367 SFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTG 426
           SF+W VQMPAI+ KSI+ILSDAGLGMAMFSLGLFMALQPRIIACGNSIA F+MAVRFLTG
Sbjct: 474 SFKWKVQMPAIIEKSIAILSDAGLGMAMFSLGLFMALQPRIIACGNSIAVFAMAVRFLTG 533

Query: 427 PAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALP 486
           PAVMAAASIAVGLRGVLL VAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALP
Sbjct: 534 PAVMAAASIAVGLRGVLLRVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALP 593

Query: 487 ITLVYYILLGL 497
           ITLVYYILLG+
Sbjct: 594 ITLVYYILLGI 604

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359491030|ref|XP_003634207.1| PREDICTED: probable auxin efflux carrier component 1c [Vitis vinifera] Back     alignment and taxonomy information
>gi|225456151|ref|XP_002282246.1| PREDICTED: probable auxin efflux carrier component 1c isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224118654|ref|XP_002317874.1| auxin efflux carrier component [Populus trichocarpa] gi|222858547|gb|EEE96094.1| auxin efflux carrier component [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224135561|ref|XP_002322104.1| auxin efflux carrier component [Populus trichocarpa] gi|222869100|gb|EEF06231.1| auxin efflux carrier component [Populus trichocarpa] Back     alignment and taxonomy information
>gi|10441744|gb|AAG17172.1|AF190881_1 PIN1-like auxin transport protein [Populus tremula x Populus tremuloides] Back     alignment and taxonomy information
>gi|33339150|gb|AAQ14257.1|AF247004_1 auxin efflux carrier [Momordica charantia] Back     alignment and taxonomy information
>gi|33339148|gb|AAQ14256.1|AF246995_1 AEC1 [Momordica charantia] Back     alignment and taxonomy information
>gi|89511766|emb|CAJ84441.1| auxin efflux carrier [Lupinus albus] Back     alignment and taxonomy information
>gi|449439457|ref|XP_004137502.1| PREDICTED: auxin efflux carrier component 1-like [Cucumis sativus] gi|449503101|ref|XP_004161834.1| PREDICTED: auxin efflux carrier component 1-like [Cucumis sativus] gi|25956262|dbj|BAC41319.1| PIN1-like auxin transport protein [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query497
UNIPROTKB|Q5SMQ9595 PIN1 "Auxin efflux carrier com 0.909 0.759 0.676 3.1e-161
TAIR|locus:2013975640 PIN3 "AT1G70940" [Arabidopsis 0.372 0.289 0.811 5.3e-147
TAIR|locus:2201225619 PIN7 "AT1G23080" [Arabidopsis 0.945 0.759 0.595 3.7e-142
TAIR|locus:2038781616 PIN4 "AT2G01420" [Arabidopsis 0.923 0.745 0.605 4.8e-142
TAIR|locus:2035037622 PIN1 "AT1G73590" [Arabidopsis 0.766 0.612 0.539 1.5e-97
TAIR|locus:2025312570 PIN6 "AT1G77110" [Arabidopsis 0.338 0.294 0.702 1.1e-93
TAIR|locus:2175559647 EIR1 "AT5G57090" [Arabidopsis 0.778 0.598 0.474 1.8e-80
TAIR|locus:2147835367 PIN8 "AT5G15100" [Arabidopsis 0.372 0.504 0.577 1.4e-62
TAIR|locus:2171392351 PIN5 "AT5G16530" [Arabidopsis 0.313 0.444 0.519 2e-51
UNIPROTKB|Q721Y6303 LMOf2365_0848 "Putative membra 0.287 0.471 0.220 0.00014
UNIPROTKB|Q5SMQ9 PIN1 "Auxin efflux carrier component 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
 Score = 1570 (557.7 bits), Expect = 3.1e-161, P = 3.1e-161
 Identities = 339/501 (67%), Positives = 375/501 (74%)

Query:    17 MYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQFPDTAGSIVSIHVDSDIMS 76
             MYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGAR+LI+EQFPDTA +I SI VD D++S
Sbjct:   124 MYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARMLITEQFPDTAANIASIVVDPDVVS 183

Query:    77 LDGRQP-LETDAEIKEDGKLHVTVRKSNASRSDIFSRRSQGLSSTTPRPSNLTNAEIYSL 135
             LDGR+  +ET+ E+KEDG++HVTVR+SNASRSDI+SRRS G SSTTPRPSNLTNAEIYSL
Sbjct:   184 LDGRRDAIETETEVKEDGRIHVTVRRSNASRSDIYSRRSMGFSSTTPRPSNLTNAEIYSL 243

Query:   136 QSSRNPTPRGSSFNHADFYSMMAGGRSSNFGATDVYGLSATSRGPTPRPSNYEDEANN-- 193
             QSSRNPTPRGSSFNH DFYSM+  GRSSNFGA D +G+     G TPRPSNYED+A+   
Sbjct:   244 QSSRNPTPRGSSFNHTDFYSMV--GRSSNFGAADAFGVRT---GATPRPSNYEDDASKPK 298

Query:   194 -----ANKSRFH-HYPAPNPGMFSPTNNNTRVNASANKKAINXXXXXXXXXXXXXXXXXR 247
                  +N +    HYPAPNP + S           A K A N                  
Sbjct:   299 YPLPASNAAPMAGHYPAPNPAVSSAPKG-------AKKAATNGQAKG------------E 339

Query:   248 DLHMFVWSSSASPVSDVFGGHDYNNNDHKEVRLAVSPQXXXXXXXXXXXXXXXXXDFSFG 307
             DLHMFVWSSSASPVSDVFGG   + ND   V+   SP+                 DFSFG
Sbjct:   340 DLHMFVWSSSASPVSDVFGGGAPDYNDAAAVK---SPRKMDGAKDREDYVERD--DFSFG 394

Query:   308 NRRGLESNNNEGEK-----VGDEK------PKAMPPTSVMTRLILIMVWRKLIRNPNTYS 356
             NR  ++ +   G++      G +       P AMPPTSVMTRLILIMVWRKLIRNPNTYS
Sbjct:   395 NRGVMDRDAEAGDEKAAAAAGADPSKAMAAPTAMPPTSVMTRLILIMVWRKLIRNPNTYS 454

Query:   357 SLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAA 416
             SLIGL+WSLV FRWN +MPAIV KSISILSDAGLGMAMFSLGLFMALQP IIACGN +A 
Sbjct:   455 SLIGLIWSLVCFRWNFEMPAIVLKSISILSDAGLGMAMFSLGLFMALQPHIIACGNKVAT 514

Query:   417 FSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTG 476
             ++MAVRFL GPAVMAAAS AVGLRG LLHVAIVQAALPQGIVPFVFAKEY+VHP ILST 
Sbjct:   515 YAMAVRFLAGPAVMAAASFAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYSVHPSILSTA 574

Query:   477 VIFGMLIALPITLVYYILLGL 497
             VIFGMLIALPITLVYYILLGL
Sbjct:   575 VIFGMLIALPITLVYYILLGL 595
GO:0005215 "transporter activity" evidence=IMP
GO:0006810 "transport" evidence=IMP
GO:0009734 "auxin mediated signaling pathway" evidence=IMP
GO:0009921 "auxin efflux carrier complex" evidence=IMP
GO:0016020 "membrane" evidence=ISS
GO:0016021 "integral to membrane" evidence=ISS
GO:0048830 "adventitious root development" evidence=IMP
TAIR|locus:2013975 PIN3 "AT1G70940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201225 PIN7 "AT1G23080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2038781 PIN4 "AT2G01420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035037 PIN1 "AT1G73590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025312 PIN6 "AT1G77110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175559 EIR1 "AT5G57090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2147835 PIN8 "AT5G15100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171392 PIN5 "AT5G16530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q721Y6 LMOf2365_0848 "Putative membrane protein" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q67UL3PIN1C_ORYSJNo assigned EC number0.70090.89530.7516yesno
Q9C6B8PINI_ARATHNo assigned EC number0.69420.92550.7395yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00017824001
SubName- Full=Putative uncharacterized protein (Chromosome chr17 scaffold_16, whole genome shotgun sequence); (604 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query497
TIGR00946321 TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Fam 8e-66
pfam03547321 pfam03547, Mem_trans, Membrane transport protein 8e-64
COG0679311 COG0679, COG0679, Predicted permeases [General fun 2e-18
TIGR00946321 TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Fam 1e-17
pfam03547321 pfam03547, Mem_trans, Membrane transport protein 4e-11
>gnl|CDD|233203 TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Family Back     alignment and domain information 
 Score =  214 bits (548), Expect = 8e-66
 Identities = 78/175 (44%), Positives = 105/175 (60%), Gaps = 6/175 (3%)

Query: 322 VGDEKPKAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKS 381
           +  E       +   TRL+LI VW+KLI+ P  ++ L+ ++ SLV F+    MP ++ KS
Sbjct: 153 LVSEDGAGGEGSGESTRLMLIFVWKKLIKFPPLWAPLLSVILSLVGFK----MPGLILKS 208

Query: 382 ISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRG 441
           ISILS A   MA+FSLG  +AL PR I  G   A  ++ VRFL  PAVMA  S  +GLRG
Sbjct: 209 ISILSGATTPMALFSLG--LALSPRKIKLGVRDAILALIVRFLVQPAVMAGISKLIGLRG 266

Query: 442 VLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLG 496
           + L VAI+QAALP G V  V A EY V  ++ ST V    +++L    ++ ILLG
Sbjct: 267 LELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIILLG 321

[Transport and binding proteins, Other]. Length = 321
>gnl|CDD|217608 pfam03547, Mem_trans, Membrane transport protein Back     alignment and domain information
>gnl|CDD|223751 COG0679, COG0679, Predicted permeases [General function prediction only] Back     alignment and domain information
>gnl|CDD|233203 TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Family Back     alignment and domain information
>gnl|CDD|217608 pfam03547, Mem_trans, Membrane transport protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 497
PF03547385 Mem_trans: Membrane transport protein; InterPro: I 99.98
TIGR00946321 2a69 he Auxin Efflux Carrier (AEC) Family. 99.93
PRK09903314 putative transporter YfdV; Provisional 99.91
COG0679311 Predicted permeases [General function prediction o 99.86
KOG2722408 consensus Predicted membrane protein [Function unk 99.14
TIGR00841 286 bass bile acid transporter. Functionally character 99.05
TIGR00832 328 acr3 arsenical-resistance protein. The first prote 98.66
PF01758187 SBF: Sodium Bile acid symporter family; InterPro: 98.6
COG0385 319 Predicted Na+-dependent transporter [General funct 98.55
PF13593 313 DUF4137: SBF-like CPA transporter family (DUF4137) 97.99
COG0798 342 ACR3 Arsenite efflux pump ACR3 and related permeas 97.46
PRK04288232 antiholin-like protein LrgB; Provisional 96.59
PRK10711231 hypothetical protein; Provisional 96.55
TIGR00659226 conserved hypothetical protein TIGR00659. Members 96.47
PF04172215 LrgB: LrgB-like family ; InterPro: IPR007300 The t 96.47
COG1346230 LrgB Putative effector of murein hydrolase [Cell e 96.3
PF03601 305 Cons_hypoth698: Conserved hypothetical protein 698 95.03
PRK03659 601 glutathione-regulated potassium-efflux system prot 94.71
PRK03562 621 glutathione-regulated potassium-efflux system prot 94.43
PRK03562 621 glutathione-regulated potassium-efflux system prot 93.29
KOG2718 371 consensus Na+-bile acid cotransporter [Inorganic i 92.21
TIGR00932 273 2a37 transporter, monovalent cation:proton antipor 92.1
PLN03159 832 cation/H(+) antiporter 15; Provisional 91.93
PRK10669 558 putative cation:proton antiport protein; Provision 91.73
PRK10669 558 putative cation:proton antiport protein; Provision 91.07
COG2855 334 Predicted membrane protein [Function unknown] 90.85
PF03812 314 KdgT: 2-keto-3-deoxygluconate permease; InterPro: 90.52
TIGR00844 810 c_cpa1 na(+)/h(+) antiporter. This model is specif 90.34
COG0475 397 KefB Kef-type K+ transport systems, membrane compo 90.24
PRK12460312 2-keto-3-deoxygluconate permease; Provisional 90.19
PRK03659 601 glutathione-regulated potassium-efflux system prot 89.77
TIGR00698 335 conserved hypothetical integral membrane protein. 88.41
PRK05326 562 potassium/proton antiporter; Reviewed 86.75
PRK12460 312 2-keto-3-deoxygluconate permease; Provisional 82.51
TIGR03082156 Gneg_AbrB_dup membrane protein AbrB duplication. T 81.67
PRK15060425 L-dehydroascorbate transporter large permease subu 80.96
PF05982327 DUF897: Domain of unknown function (DUF897) ; Inte 80.95
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea Back     alignment and domain information 
Probab=99.98  E-value=1.4e-31  Score=272.09  Aligned_cols=279  Identities=32%  Similarity=0.431  Sum_probs=231.7

Q ss_pred             eEeccchhhhcccccccCchhhhhHHHHHHHHHHHHHHHHhhhhhHhhhhcCCCCCcceEEEEECCCccccCCCCccccc
Q 010956            7 FSINFTKHSRMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQFPDTAGSIVSIHVDSDIMSLDGRQPLETD   86 (497)
Q Consensus         7 ~~~~ipl~~~myg~~~gslmvqiVVLQcIIWYTLlLflfE~r~ak~li~~qfp~~a~si~s~~vd~dv~sl~g~~~l~t~   86 (497)
                      ..+|+|++.++||+..-...+...++++++||++..+|+|+|.++.-..||.++++.++.+.+.|+|..++||+++.++|
T Consensus       107 ~~lglpi~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (385)
T PF03547_consen  107 GFLGLPILQALFGERGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEEEPSSAESIDSEQEDSDEMSLDGSSPSSTE  186 (385)
T ss_pred             hhhHHHHHHHHhcchhhhhehHHHHhhHHHHHHHHHHhhcccccccccccccccccccccccccCCccccCCcccccccc
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCcEEEEEEecCCCCcchhccccCCCCCCCCCCCCCCccceecccCCCCCCCCCCCCCcccccccccCCCCCCCC
Q 010956           87 AEIKEDGKLHVTVRKSNASRSDIFSRRSQGLSSTTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHADFYSMMAGGRSSNFG  166 (497)
Q Consensus        87 ae~~~dg~~~v~vr~s~~s~~~~~~~~~~~~~~~tpr~snlt~~eiys~~ss~~~tpr~s~f~~~d~~~~~~~~~~s~~~  166 (497)
                      .|+++||+.|...+++.+++.+...                                                       
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------------  211 (385)
T PF03547_consen  187 EEIDEDGSPSSTPSQSSASAPSSVS-------------------------------------------------------  211 (385)
T ss_pred             cccccCCcccccccccccccchhhc-------------------------------------------------------
Confidence            9999998866544332221111000                                                       


Q ss_pred             CcccccccCCCCCCCCCCCCchhhhhhcCCCCCCCCCCCCCCCCCCCCCCcccccchhhhhhcccccccCCCCCCCCCCC
Q 010956          167 ATDVYGLSATSRGPTPRPSNYEDEANNANKSRFHHYPAPNPGMFSPTNNNTRVNASANKKAINGQAQQKGEDGAGAGAGA  246 (497)
Q Consensus       167 ~~~~~~~~~~s~~~tpr~s~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (497)
                                   .+|++++                                                            
T Consensus       212 -------------~~~~~~~------------------------------------------------------------  218 (385)
T PF03547_consen  212 -------------TSPSPSN------------------------------------------------------------  218 (385)
T ss_pred             -------------cCCcccc------------------------------------------------------------
Confidence                         0000000                                                            


Q ss_pred             ccceEEEecCCCCCCccccCCCCCCCCcccccccccCCCCCCCCCCCCCcccccccccccCccccCccCCCCCCCCCCCC
Q 010956          247 RDLHMFVWSSSASPVSDVFGGHDYNNNDHKEVRLAVSPQGGKGEGGGGHEEYMEREDFSFGNRRGLESNNNEGEKVGDEK  326 (497)
Q Consensus       247 ~~~hmfvws~~~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  326 (497)
                                                                ....   .     .                        
T Consensus       219 ------------------------------------------~~~~---~-----~------------------------  224 (385)
T PF03547_consen  219 ------------------------------------------STGA---E-----Q------------------------  224 (385)
T ss_pred             ------------------------------------------cchh---h-----h------------------------
Confidence                                                      0000   0     0                        


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchh
Q 010956          327 PKAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPR  406 (497)
Q Consensus       327 ~~~mp~~~v~tr~ilk~vlkkLLrNP~IiAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k  406 (497)
                           ...-+++..+++.+++.++||+++|.++|+++.+++....+.+|.++.++++++|++++|++||++|+.|+..++
T Consensus       225 -----~~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~  299 (385)
T PF03547_consen  225 -----KSSNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPR  299 (385)
T ss_pred             -----hhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCc
Confidence                 000155666778889999999999999999999996544555669999999999999999999999999997644


Q ss_pred             hhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHhhccchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHH
Q 010956          407 IIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALP  486 (497)
Q Consensus       407 ~i~~~~k~il~~~lvRLLV~PLLal~l~~lLgLd~~ll~VaIL~AAmP~Ai~s~VfA~eYg~d~elASs~V~~STLLSLP  486 (497)
                      ...+.++.....+++|++++|++++++++++++++....++++++++|+|++.+++|++||.+++.++.+++++|+++++
T Consensus       300 ~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~~~~~~~  379 (385)
T PF03547_consen  300 KSALGWKPSIIAVLVRLIILPLIGIGIVFLLGLDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFWSTLLSIP  379 (385)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence            34456777777899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 010956          487 ITLVYY  492 (497)
Q Consensus       487 i~lv~~  492 (497)
                      ++.+|+
T Consensus       380 ~~~~~~  385 (385)
T PF03547_consen  380 TLPLWI  385 (385)
T ss_pred             HHHHHC
Confidence            888774

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family Back     alignment and domain information
>PRK09903 putative transporter YfdV; Provisional Back     alignment and domain information
>COG0679 Predicted permeases [General function prediction only] Back     alignment and domain information
>KOG2722 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>TIGR00841 bass bile acid transporter Back     alignment and domain information
>TIGR00832 acr3 arsenical-resistance protein Back     alignment and domain information
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes Back     alignment and domain information
>COG0385 Predicted Na+-dependent transporter [General function prediction only] Back     alignment and domain information
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137) Back     alignment and domain information
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK04288 antiholin-like protein LrgB; Provisional Back     alignment and domain information
>PRK10711 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00659 conserved hypothetical protein TIGR00659 Back     alignment and domain information
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [] Back     alignment and domain information
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins Back     alignment and domain information
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>PRK10669 putative cation:proton antiport protein; Provisional Back     alignment and domain information
>PRK10669 putative cation:proton antiport protein; Provisional Back     alignment and domain information
>COG2855 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi Back     alignment and domain information
>TIGR00844 c_cpa1 na(+)/h(+) antiporter Back     alignment and domain information
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK12460 2-keto-3-deoxygluconate permease; Provisional Back     alignment and domain information
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>TIGR00698 conserved hypothetical integral membrane protein Back     alignment and domain information
>PRK05326 potassium/proton antiporter; Reviewed Back     alignment and domain information
>PRK12460 2-keto-3-deoxygluconate permease; Provisional Back     alignment and domain information
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication Back     alignment and domain information
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional Back     alignment and domain information
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query497
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 47.2 bits (111), Expect = 1e-05
 Identities = 58/461 (12%), Positives = 128/461 (27%), Gaps = 155/461 (33%)

Query: 1   MDHH-----SIFSINFTK-------HSRMYGEFSGSLMVQIVVLQCIIWYTLMLF-MFEY 47
             +      S+F   F                 S   +  I++ +  +  TL LF     
Sbjct: 14  HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73

Query: 48  RGARLLISEQFPDTA-----GSIVS-IHVDSDIMSLDGRQP-LETDAEIKEDGKLHVTVR 100
           +     + ++F +         ++S I  +        RQP + T   I++  +L+   +
Sbjct: 74  KQEE--MVQKFVEEVLRINYKFLMSPIKTEQ-------RQPSMMTRMYIEQRDRLYNDNQ 124

Query: 101 KSNASRSDIFSRRSQGLSSTTPRP---SNLTNAEIYSLQSSRNPTPRGSSFNHADFYSMM 157
                   +F++ +        R      L  A +  L+ ++N    G           +
Sbjct: 125 --------VFAKYN------VSRLQPYLKLRQA-LLELRPAKNVLIDG-----------V 158

Query: 158 AG-GRSS---------------NFGATDVYGLSATSRGPTPRPSNYEDEANNANKSRFHH 201
            G G++                +F    ++ L+  +            E       +  +
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFK---IFWLNLKNCN--------SPETVLEMLQKLLY 207

Query: 202 YPAPNPGMFSPTNNNTRVNASANKKAINGQAQQKGEDGAGAGAGARDLHMF--VWSSSAS 259
              PN    S  ++N ++   + +  +    + K             L +   V ++   
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP--------YENCLLVLLNVQNAK-- 257

Query: 260 PVSDVFGGH--------DYNNNDHKEVRLAVSPQGGKGEGGGGHEEYMEREDFSFGNRRG 311
              + F                  K+V   +S           H                
Sbjct: 258 -AWNAFNLSCKILLTTRF------KQVTDFLSAATTT------HISLDHHSM-------T 297

Query: 312 LESNNNEG--EKVGDEKPKAMPPTSVMTRLILI-MVWRKLIRNPNTY------------- 355
           L  +  +    K  D +P+ +P   + T    + ++   +     T+             
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 356 ---SSLIGLV--------WSLVSFRWNVQMPAIVAKSISIL 385
              SSL  L           L  F  +  +P I+   +S++
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL---LSLI 395

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query497
3zux_A 332 Transporter, ASBTNM; transport protein, membrane p 99.14
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Back     alignment and structure
Probab=99.14  E-value=6.6e-10  Score=112.48  Aligned_cols=141  Identities=14%  Similarity=0.117  Sum_probs=112.9

Q ss_pred             HHHhhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccch-hhhhcchhHHHHHHHHHHH
Q 010956          346 RKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQP-RIIACGNSIAAFSMAVRFL  424 (497)
Q Consensus       346 kkLLrNP~IiAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~-k~i~~~~k~il~~~lvRLL  424 (497)
                      .+.+.++.++.+++++++.++       .|.... .++..-..++++.||..|+.+.... +...++.+......+.+++
T Consensus        13 ~~~l~~~~~l~i~~~~~lg~~-------~P~~~~-~~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~v   84 (332)
T 3zux_A           13 SSFIGKTFSLWAALFAAAAFF-------APDTFK-WAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFA   84 (332)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHH-------CGGGTG-GGGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------cchhhh-hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHH
Confidence            345678888888888888776       232111 1233344678899999999998742 2233556777888999999


Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHhhccchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 010956          425 TGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYIL  494 (497)
Q Consensus       425 V~PLLal~l~~lLgLd~~ll~VaIL~AAmP~Ai~s~VfA~eYg~d~elASs~V~~STLLSLPi~lv~~iL  494 (497)
                      ++|++++++..++++++.....+++.+++|++..+.+++..+|+|.+++...+.++|++++.++.++..+
T Consensus        85 i~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l  154 (332)
T 3zux_A           85 IMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLM  154 (332)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999886655554443

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00