Citrus Sinensis ID: 010968

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490------
Protein Sequence
MGSKKRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKKNLSFMLEGVQRQFSALDVLQSIETFFSASGASCKLNASSFTVNITVSNDQCNTILKNEVNRVDEGPTSKHLEETSSSSSCLNASSTSLSFRTAVFQQIPGTLLVQGSLLHKDNPLPGLFSSIFQQLEETLRFKFCR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHHHHHcccccccEEEccccccccccccHHHHHHHHHHHHHHHcccEEEcccccccccccccHHHHHHHHHHHHcccccccccccccEEEEEccccccHHHHHHcccccccEEEEEcccHHHHHHHHHHHHHcccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccHHHHccccccccccccccEEccccHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHccccEEEEEEEEcccEEEEEEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccEEEEEEccHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEEEEEccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccHHHHHHHcccHHHHEEEcccccEEEccccHHHHHHHHHHHHHHHccccEEccccccccccccHHHHHHHHHHHHHcccccccccccccEEEEEEccccccHHHHHccHHcccEEEEccccHHHHHHHHHHHHHcccHHccEEEEEccccccccccEEccHHHHHcccccccHHHHHHHHHcccHHHHcccccccccccccccEEEEEEccccEEEEEcccccccccHHHHcccccEcccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHccHHHHHHHHHHccccEEEEEEEcccccEEEEEEEEEccHHHHcccHHHHHccccEEEccccccccHHHHHHHHHHHHHHHHHHHcccccccEEEEEHHHHHHHHHHHHHHHcccccccccEEEEEEccccccccccccccEEEEEEEEccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mgskkrrrrreerptihpknkysenppdfallaslypsfepfvfysrdgrpridwtdfnatRELTRVLLLHDhglnwwipdgqlcptvpnrsnyIHWIEDLlssniipttsrngdkvkgfdigtganciypllgasllgwsfvgsdmTDVALEWAEknvksnphiselieirkvdnsestpsiqesltgksvqdesnmdmsghmdeeaepsssssfnlpagaqssyhgppvlvGVVRdgeqfdfcicnppffesmeeaglnpktscggtpeemvcsggeRAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFvqgqtcrwglawsfvpparkiisphvAEKKNLSFMLEGVQRQFSALDVLQSIETFFsasgascklnasSFTVNITvsndqcntilknevnrvdegptskhleetsssssclnasstSLSFRTAVFQqipgtllvqgsllhkdnplpglFSSIFQQLEETLRFKFCR
Flexible Loop (DISEMBL)
mgskkrrrrreerptihpknkysenppDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEknvksnphiselieirkvdnsestpsiqesltgksvqdeSNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTtefvqgqtcrwGLAWSFVPPARKIISPHVAEKKNLSFMLEGVQRQFSALDVLQSIETFFSASGASCKLNASSFTVNITVsndqcntilknevnrvdegptskhleetsssssclnASSTSLSFRTAVFQQIPGTLLVQGSLLHKDNPLPGLFSSIFQQLEETLRFKFCR
Low Complexity Region (SEG)
MGSKKrrrrreerPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKKNLSFMLEGVQRQFSALDVLQSIETFFSASGASCKLNASSFTVNITVSNDQCNTILKNEVNRVDEGPtskhleetsssssclnasstslsFRTAVFQQIPGTLLVQGSLLHKDNPLPGLFSSIFQQLEETLRFKFCR
Disordered region (IsUnstruct)
****************************FALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVK*******LI**********************************************************GPPVLVGVVRDGEQFDFCICNPPFFES*****************EMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKKNLSFMLEGVQRQFSALDVLQSIETFFSASGASCKLNASSFTVNITVSNDQCNTILKN******************************LSFRTAVFQQIPGTLLVQGSLLHKDNPLPGLFSSIFQQLEETLRFKF**
Disordered Region (DISOPRED)
*********************YSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMS****************************PVLVGVVRDGEQFDFC*************************EEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV***************************FSALDVLQSIETFFSASGASCKLNASSFTVNITVSNDQCNTI*******************************TSLSFRTAVFQQIPGTLLVQGSLLHKDNPLPGLFSSIFQQLEETLRFKFC*
Disordered Region (DISEMBL)
*************PTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD******************************************LPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKKNLSFMLEGVQRQFSALDVLQSIETFFSASGASCKLNASSFTVNITVSNDQCNTILKNEVNRVDE**********************SLSFRTAVFQQIPGTLLVQGSLLHKDNPLPGLFSSIFQQLEETLRFKFCR
Disordered Region (DISPRO)
******************K**YSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKKNLSFMLEGVQRQFSALDVLQSIETFFSASGASCKLNASSFTVNITVSNDQCNTILKNEVNRVDEGPTSKHLEETSSSSSCLNASSTSLSFRTAVFQQIPGTLLVQGSLLHKDNPLPGLFSSIFQQLEETLRFKFCR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSKKRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKKNLSFMLEGVQRQFSALDVLQSIETFFSASGASCKLNASSFTVNITVSNDQCNTILKNEVNRVDEGPTSKHLEETSSSSSCLNASSTSLSFRTAVFQQIPGTLLVQGSLLHKDNPLPGLFSSIFQQLEETLRFKFCR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	496	2.2.26 [Sep-21-2011]
Q6DC64	471	Methyltransferase-like pr	yes	no	0.556	0.585	0.380	6e-61
Q554C9	568	Methyltransferase-like pr	yes	no	0.629	0.549	0.402	4e-60
Q6GR37	547	Methyltransferase-like pr	N/A	no	0.578	0.524	0.380	7e-60
Q9CQG2	553	Methyltransferase-like pr	yes	no	0.606	0.544	0.372	3e-59
Q86W50	562	Methyltransferase-like pr	yes	no	0.685	0.604	0.349	2e-58
Q5ZIA0	558	Methyltransferase-like pr	yes	no	0.560	0.498	0.369	1e-56
A6W2M9	327	Ribosomal RNA large subun	yes	no	0.586	0.889	0.318	2e-46
Q4ZXI1	328	Ribosomal RNA large subun	yes	no	0.570	0.862	0.318	5e-45
Q48MF3	328	Ribosomal RNA large subun	yes	no	0.574	0.868	0.317	3e-44
Q61J97	481	Methyltransferase-like pr	N/A	no	0.554	0.571	0.331	3e-44

>sp|Q6DC64|MET16_DANRE Methyltransferase-like protein 16 OS=Danio rerio GN=mettl16 PE=2 SV=1

 Score =  235 bits (600), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 134/352 (38%), Positives = 189/352 (53%), Gaps = 76/352 (21%)

Query: 15  TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
           ++HP+N+Y + PPDF  LAS YP F+  V  +  GR  +++ D  A R LT  LL  D G
Sbjct: 6   SMHPRNRYKDKPPDFVYLASKYPEFQKHVQTTLTGRVTLNFKDPEAVRALTCTLLKEDFG 65

Query: 75  LNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLG 134
           L   IP  +L PTVP R NYIHW+EDL+           G+  +G DIGTGA+CIYPLLG
Sbjct: 66  LTIEIPLERLIPTVPLRLNYIHWVEDLIGG--------QGNPQRGIDIGTGASCIYPLLG 117

Query: 135 ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194
           A++ GW F+ +++ D+   +A+KNV+ N H++ELI++ KV         Q++L   ++++
Sbjct: 118 ATMNGWFFLATEVDDICFNYAKKNVEQN-HLAELIKVVKVP--------QKTLLMDALKE 168

Query: 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFES 254
           ES +                                           +DFC+CNPPFF +
Sbjct: 169 ESIV-------------------------------------------YDFCMCNPPFFAN 185

Query: 255 MEEA-GLNPKTSCGGTPE--------EMVCSGGERAFITRIIEDSVALKQTFRWYTSMVG 305
             EA G+N + S    P         E++  GGE  F+ R+I DS+ LK+  RWY+ M+G
Sbjct: 186 QLEAKGVNSRNSRRPPPSSINTGGVTEIMAEGGELEFVKRVIHDSLQLKKRLRWYSCMLG 245

Query: 306 RKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV-------PPARK 350
           +K +L  L  +LRK GV  V  TEF QG+T RW LAWSF        PP +K
Sbjct: 246 KKCSLAPLKDELRKQGVAKVTHTEFCQGRTMRWALAWSFYDDVPVPSPPCKK 297

Probable methyltransferase.
Danio rerio (taxid: 7955)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q554C9|MET16_DICDI Methyltransferase-like protein 16 homolog OS=Dictyostelium discoideum GN=DDB_G0275203 PE=3 SV=1

 Score =  233 bits (593), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 143/355 (40%), Positives = 198/355 (55%), Gaps = 43/355 (12%)

Query: 3   SKKRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATR 62
           +KK+R+R  +  ++H  N Y  NPP+F LLAS YP+F+ ++    +    IDW D NAT+
Sbjct: 31  TKKKRKRSND--SMHINNFYRYNPPNFKLLASKYPTFDKYIINKTEKIYNIDWKDSNATK 88

Query: 63  ELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSS-NIIPTTSRNGDKV-KGF 120
           ELTRVLL HD GL   +PD  LCPT+  R NY++WI D L +  II   + N +K+ KG 
Sbjct: 89  ELTRVLLDHDFGLRIELPDNYLCPTLTLRINYLYWISDQLKNLKIILNDNDNDNKIIKGI 148

Query: 121 DIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSES 179
           DIGTG +CI+PLLGA L   WSF+G D+ D  LE+A+ N+  N                 
Sbjct: 149 DIGTGTSCIFPLLGAKLFNNWSFIGIDIDDKVLEYAQNNITIN----------------- 191

Query: 180 TPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDG 239
             S+   +T    ++E N D+   +    E   S++FN      SS            D 
Sbjct: 192 --SLNSKIT--LFKNEKNSDILLKLLNYKE--GSNTFN------SSNDDHQDNHDDDDDD 239

Query: 240 EQF--DFCICNPPFFESMEEAGLNPKTS----CGGTPEEMVCSGGERAFITRIIEDSVAL 293
           E++  DFC+CNPPFF+ + E   N   +    C G+  EMV  GGE  F+ RII++S  L
Sbjct: 240 EEYFADFCLCNPPFFKDLNENNNNKNNNPKSNCTGSVNEMVTDGGEFEFVKRIIKESFQL 299

Query: 294 KQTFRWYTSMVGRKSNLKFLISKLRK---VGVTIVKTTEFVQGQTCRWGLAWSFV 345
           K   R+YT+M+GRK NL  LI+ L K   +    ++TTE VQG T RW L+W F+
Sbjct: 300 KCKIRFYTTMIGRKVNLNPLINILIKQYYLPKNQIQTTELVQGNTSRWVLSWYFL 354

Probable methyltransferase.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q6GR37|MET16_XENLA Methyltransferase-like protein 16 OS=Xenopus laevis GN=mettl16 PE=2 SV=1

 Score =  231 bits (590), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 137/360 (38%), Positives = 197/360 (54%), Gaps = 73/360 (20%)

Query: 15  TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
           ++HP+N+Y + PPDFA LAS YP F+  V  +  GR  +++ D  A R LT  LL  D G
Sbjct: 6   SMHPRNRYKDKPPDFAYLASKYPEFKQHVNVNLAGRVSLNFKDPCAVRALTCTLLKEDFG 65

Query: 75  LNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKV---KGFDIGTGANCIYP 131
           L   IP  +L PTVP R NYIHW+EDL++ +       + DK    +G DIGTGA+CIYP
Sbjct: 66  LTIDIPLERLIPTVPLRLNYIHWVEDLINYH-------DSDKTALRRGIDIGTGASCIYP 118

Query: 132 LLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKS 191
           LLGA+L GW F+ +++ D+   +A+KNV+ N ++S+LI++ KV         Q++L   +
Sbjct: 119 LLGATLNGWYFLATEVDDICYNYAKKNVEQN-NLSDLIKVVKVP--------QKTLLMDA 169

Query: 192 VQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPF 251
           +++ES +                                           +DFC+CNPPF
Sbjct: 170 LKEESEI------------------------------------------IYDFCMCNPPF 187

Query: 252 FESMEEA-GLN--------PKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS 302
           F +  EA G+N        P +   G   E++  GGE  F+ RII DS+ LK+  RWY+ 
Sbjct: 188 FANQLEAQGVNSRNPHRSPPSSVNTGGITEIMAEGGELEFVKRIIHDSLKLKKRLRWYSC 247

Query: 303 MVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKKNL 362
           M+G+K +L  L  +LR  GV  V  TEF QG+T RW LAWSF     ++I P+  +K+ L
Sbjct: 248 MLGKKCSLAPLKEELRLQGVPKVAHTEFYQGRTMRWALAWSFY---EEVIIPNPPKKRKL 304

Probable methyltransferase.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9CQG2|MET16_MOUSE Methyltransferase-like protein 16 OS=Mus musculus GN=Mettl16 PE=1 SV=1

 Score =  229 bits (584), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 141/379 (37%), Positives = 205/379 (54%), Gaps = 78/379 (20%)

Query: 15  TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
           ++H +N+Y + PPDFA LAS YP F+  +  + +GR  +++ D  A R LT  LL  D G
Sbjct: 6   SMHARNRYKDKPPDFAYLASKYPDFKQHIQINLNGRVSLNFKDPEAVRALTCTLLREDFG 65

Query: 75  LNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLG 134
           L+  IP  +L PTVP R NYIHW+EDL+       T+      +G DIGTGA+CIYPLLG
Sbjct: 66  LSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKTTLR----RGIDIGTGASCIYPLLG 121

Query: 135 ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194
           A+L GW F+ +++ D+   +A+KNV+ N ++S+LI++ KV         Q++L   ++++
Sbjct: 122 ATLNGWYFLATEVDDMCFNYAKKNVEQN-NLSDLIKVVKVP--------QKTLLMDALKE 172

Query: 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFES 254
           ES +                                           +DFC+CNPPFF +
Sbjct: 173 ESEI------------------------------------------VYDFCMCNPPFFAN 190

Query: 255 MEEA-GLN--------PKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVG 305
             EA G+N        P +   G   E++  GGE  F+ RII DS+ LK+  RWY+ M+G
Sbjct: 191 QLEAKGVNSRNSRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLG 250

Query: 306 RKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV-------PPA--RKIISPHV 356
           +K +L  L  +LR  GV  V  TEF QG+T RW LAWSF        PP+  RK+  P  
Sbjct: 251 KKCSLAPLKEELRIQGVPKVTFTEFCQGRTMRWALAWSFYDDVTVPSPPSKRRKLEKP-- 308

Query: 357 AEKKNLSF-MLEGVQRQFS 374
             +K ++F +LE V ++ S
Sbjct: 309 --RKPITFVVLESVMKELS 325

Probable methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q86W50|MET16_HUMAN Methyltransferase-like protein 16 OS=Homo sapiens GN=METTL16 PE=1 SV=2

 Score =  227 bits (578), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 150/429 (34%), Positives = 218/429 (50%), Gaps = 89/429 (20%)

Query: 15  TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
           ++H +N+Y + PPDFA LAS YP F+  V  + +GR  +++ D  A R LT  LL  D G
Sbjct: 6   SMHARNRYKDKPPDFAYLASKYPDFKQHVQINLNGRVSLNFKDPEAVRALTCTLLREDFG 65

Query: 75  LNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLG 134
           L+  IP  +L PTVP R NYIHW+EDL+        S      +G DIGTGA+CIYPLLG
Sbjct: 66  LSIDIPLERLIPTVPLRLNYIHWVEDLIGHQ----DSDKSTLRRGIDIGTGASCIYPLLG 121

Query: 135 ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194
           A+L GW F+ +++ D+   +A+KNV+ N ++S+LI++ KV         Q++L   ++++
Sbjct: 122 ATLNGWYFLATEVDDMCFNYAKKNVEQN-NLSDLIKVVKVP--------QKTLLMDALKE 172

Query: 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFES 254
           ES +                                           +DFC+CNPPFF +
Sbjct: 173 ESEI------------------------------------------IYDFCMCNPPFFAN 190

Query: 255 MEEA-GLN--------PKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVG 305
             EA G+N        P +   G   E++  GGE  F+ RII DS+ LK+  RWY+ M+G
Sbjct: 191 QLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLG 250

Query: 306 RKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV-------PPA--RKIISPHV 356
           +K +L  L  +LR  GV  V  TEF QG+T RW LAWSF        PP+  RK+  P  
Sbjct: 251 KKCSLAPLKEELRIQGVPKVTYTEFCQGRTMRWALAWSFYDDVTVPSPPSKRRKLEKP-- 308

Query: 357 AEKKNLSFMLEGVQRQFSALDVLQSIETFFSASGASCKLNASSFTVNITVSNDQCNTILK 416
             +K ++F+            VL S+    S   +  +   +   V +T   ++  T LK
Sbjct: 309 --RKPITFV------------VLASVMKELSLKASPLRSETAEGIVVVTTWIEKILTDLK 354

Query: 417 NEVNRVDEG 425
            +  RV  G
Sbjct: 355 VQHKRVPCG 363

Probable methyltransferase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5ZIA0|MET16_CHICK Methyltransferase-like protein 16 OS=Gallus gallus GN=METTL16 PE=2 SV=1

 Score =  221 bits (562), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 131/355 (36%), Positives = 189/355 (53%), Gaps = 77/355 (21%)

Query: 15  TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
           ++H +N+Y + PPDFA LA  YP F   V  +  GR  +++ D  A R LT  LL  D G
Sbjct: 6   SMHARNRYKDKPPDFAYLAGKYPEFRQHVQTTLAGRVSLNFKDPEAVRALTCTLLKEDFG 65

Query: 75  LNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDK---VKGFDIGTGANCIYP 131
           L   IP  +L PTVP R NYIHW+EDL+         ++ DK    +G DIGTGA+CIYP
Sbjct: 66  LTIDIPLERLIPTVPLRLNYIHWVEDLIG-------HQDADKRVLRRGIDIGTGASCIYP 118

Query: 132 LLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKS 191
           LLG++L GW F+ +++ D+   +A+KNV+ N ++S+LI++ KV         Q++L   +
Sbjct: 119 LLGSTLNGWYFLATEVDDMCFNYAKKNVEQN-NLSDLIKVVKVP--------QKTLLMDA 169

Query: 192 VQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPF 251
           +++ES +                                           +DFC+CNPPF
Sbjct: 170 LKEESEI------------------------------------------IYDFCMCNPPF 187

Query: 252 FESMEEA-GLN--------PKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS 302
           F +  EA G+N        P +   G   E++  GGE  F+ RII DS+ LK+  RWY+ 
Sbjct: 188 FANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSC 247

Query: 303 MVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV-------PPARK 350
           M+G+K +L  L  +L+  GV  V  TEF QG+T RW LAWSF        PP+++
Sbjct: 248 MLGKKCSLAPLKEELKIQGVPKVTHTEFCQGRTMRWALAWSFYDDVQVPSPPSKR 302

Probable methyltransferase.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A6W2M9|RLMF_MARMS Ribosomal RNA large subunit methyltransferase F OS=Marinomonas sp. (strain MWYL1) GN=rlmF PE=3 SV=1

 Score =  187 bits (474), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 116/364 (31%), Positives = 175/364 (48%), Gaps = 73/364 (20%)

Query: 1   MGSKKRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNA 60
           + SK  + +R  +  +HP+N +     DFALLA   P    F+  ++ G   +D+ + NA
Sbjct: 3   LKSKNTKSKRTNKLELHPRNPHRARY-DFALLADSCPELSGFIQLNQYGNESVDFANPNA 61

Query: 61  TRELTRVLLLHDHGLNWW-IPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKG 119
            + L R LL H +G+ +W IP G LCP +P R++YIH++ DLL+++ +    R G  VK 
Sbjct: 62  VKTLNRALLNHFYGVAFWDIPPGYLCPPIPGRADYIHYLADLLAASNLGVIPR-GKGVKV 120

Query: 120 FDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSES 179
            D+G GANC+YP++G    GW FVGSD+  VA+   +  VKSNP +   I  R       
Sbjct: 121 LDVGVGANCVYPIIGHQEYGWQFVGSDVNPVAVATCDTIVKSNPCLKGAISAR------- 173

Query: 180 TPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDG 239
                                        +  S+  F+                GV ++ 
Sbjct: 174 ----------------------------LQTQSAKLFD----------------GVWKEK 189

Query: 240 EQFDFCICNPPFFESMEEAGLN------------------PKTSCGGTPEEMVCSGGERA 281
           ++FD  +CNPPF  S E A ++                  P  + GGT  E+ C GGE  
Sbjct: 190 DRFDLTLCNPPFHTS-ESAMIDESQRKWRGVKGKKTTTQKPVLNFGGTAAELWCDGGEAG 248

Query: 282 FITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLA 341
           F++R++++SV       W+TS+V R+ NL  +   L+ VG   VKT E  QGQ     +A
Sbjct: 249 FVSRMVKESVQYADRCFWFTSLVARQGNLDAIYRTLKDVGARQVKTIEMAQGQKISRFVA 308

Query: 342 WSFV 345
           WSF+
Sbjct: 309 WSFL 312

Specifically methylates the adenine in position 1618 of 23S rRNA.

Marinomonas sp. (strain MWYL1) (taxid: 400668)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 1

>sp|Q4ZXI1|RLMF_PSEU2 Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas syringae pv. syringae (strain B728a) GN=rlmF PE=3 SV=1

 Score =  182 bits (462), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 115/361 (31%), Positives = 171/361 (47%), Gaps = 78/361 (21%)

Query: 11  EERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLL 70
            E+ T+HP+N++ +   DFA L    P    FV  +  G+  ID+ +  A R   R LL 
Sbjct: 22  REKATLHPRNRH-QGQYDFAKLIKSSPELAAFVILNPYGKESIDFANPQAVRVFNRALLK 80

Query: 71  HDHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLSSN---IIPTTSRNGDKVKGFDIGTGA 126
             +G+ +W IP   LCP +P R++Y+H++ DLL+ +   +IP     G  +K  DIGTGA
Sbjct: 81  AFYGIAHWDIPADYLCPPIPGRADYLHFLADLLAEDNEGVIP----RGASIKALDIGTGA 136

Query: 127 NCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQES 186
           NCIYPLLG S  GW FVGSD+   A+  A   VK+N  +S+ I +R+  N          
Sbjct: 137 NCIYPLLGHSDYGWQFVGSDIDSTAIAAATTIVKAN-GLSKAISVRQQANRRQ------- 188

Query: 187 LTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCI 246
                                                       +L+G++   E+F   +
Sbjct: 189 --------------------------------------------ILLGLLDSSERFHVSL 204

Query: 247 CNPPFFESMEEAGLN-----------------PKTSCGGTPEEMVCSGGERAFITRIIED 289
           CNPPF  S+EEA                    P  + GG  +E+ C GGE  FIT++I++
Sbjct: 205 CNPPFHASLEEAQRGSQRKWRALGKADPKRKLPVLNFGGQSQELWCDGGEIGFITQLIQE 264

Query: 290 SVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPAR 349
           S  L     W++++V + SNL  + S L+K G   VK  E  QGQ     +AW+F+  A+
Sbjct: 265 SALLPSQVAWFSTLVSKASNLPPIHSALKKAGALEVKVVEMGQGQKQSRFVAWTFLDKAQ 324

Query: 350 K 350
           +
Sbjct: 325 R 325

Specifically methylates the adenine in position 1618 of 23S rRNA.

Pseudomonas syringae pv. syringae (strain B728a) (taxid: 205918)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 1

>sp|Q48MF3|RLMF_PSE14 Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=rlmF PE=3 SV=2

 Score =  180 bits (456), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/365 (31%), Positives = 176/365 (48%), Gaps = 80/365 (21%)

Query: 12  ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
           E+ T+HP+N++ +   DFA L    P    FV  +  G+  ID+ D  A R   R LL  
Sbjct: 23  EKATLHPRNRH-QGHYDFAKLIKSSPELAAFVILNPYGKESIDFADPQAVRVFNRALLKA 81

Query: 72  DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLSSN---IIPTTSRNGDKVKGFDIGTGAN 127
            +G+ +W IP   LCP +P R++Y+H++ DLL+ +   +IP     G  +K  DIGTGAN
Sbjct: 82  FYGIAHWDIPADYLCPPIPGRADYLHFLADLLAEDNEGVIP----RGASIKALDIGTGAN 137

Query: 128 CIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESL 187
           CIYPLLG S  GW FVGSD+   A+  A   +K+N  +S+ I +R+ DN +         
Sbjct: 138 CIYPLLGHSDYGWQFVGSDIDSTAIAAATTIIKAN-GLSKAISVRQQDNRKQ-------- 188

Query: 188 TGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCIC 247
                                                      +L+G++   E+F   +C
Sbjct: 189 -------------------------------------------ILLGLLDSSERFHVSLC 205

Query: 248 NPPFFESMEEAGLN-----------------PKTSCGGTPEEMVCSGGERAFITRIIEDS 290
           NPPF  S++EA                    P  + GG  +E+ C GGE  F+TR+I++S
Sbjct: 206 NPPFHASLDEAQRGSQRKWRALGKADPKRKLPVLNFGGQSQELWCEGGEIGFVTRLIQES 265

Query: 291 VALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARK 350
             L     W++++V + SNL  + + L+K G   VK  E  QGQ     +AW+F+  A++
Sbjct: 266 ATLPSQVVWFSTLVSKASNLPPIQNALKKAGALEVKVIEMGQGQKQSRFVAWTFLDKAQR 325

Query: 351 IISPH 355
             +PH
Sbjct: 326 --TPH 328

Specifically methylates the adenine in position 1618 of 23S rRNA.

Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) (taxid: 264730)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 1

>sp|Q61J97|MET16_CAEBR Methyltransferase-like protein 16 homolog OS=Caenorhabditis briggsae GN=CBG09879 PE=3 SV=1

 Score =  180 bits (456), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 117/353 (33%), Positives = 168/353 (47%), Gaps = 78/353 (22%)

Query: 16  IHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGL 75
           +HP+N Y + PPDF  LA  YP F  F  Y  +G+  +D+    A R LT+ LL  D  L
Sbjct: 7   MHPRNPYRDKPPDFKALAIEYPEFRKFCQYVSNGKVTLDFRKDAAVRCLTQTLLKKDFSL 66

Query: 76  NWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGA 135
           N  +P G L P VP + NY   I+D+L +N I +       V G DIGTG +CI+ L+GA
Sbjct: 67  NVNLPAGHLVPRVPQKLNYCLLIDDILQANSITSN------VVGIDIGTGTSCIHALIGA 120

Query: 136 SLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195
              GW FV +D  + +++ A +NV  N  + + I +  V+     P+++  L        
Sbjct: 121 RHFGWKFVATDGDENSVQVAHENVARN-EMGDSICVVHVN-----PAVKTVL-------- 166

Query: 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFES- 254
             MD+   M     P S                            +F FC+CNPPFFE  
Sbjct: 167 --MDVINSM-----PDS----------------------------EFSFCMCNPPFFEKS 191

Query: 255 ------MEEAGLN---------------PKTSCGGTPEEMVCSGGERAFITRIIEDSVAL 293
                  EE  L+               P +    +  E+   GGE AF+ RII+DSV L
Sbjct: 192 DKEERFCEEPSLSNETYSNNFDFDMRSAPHSETIASSAELYVEGGEVAFVNRIIDDSVCL 251

Query: 294 KQTFRWYTSMVGRKSNLKFLISKLRKVGVTI-VKTTEFVQGQTCRWGLAWSFV 345
           +   ++YT+M+GRKS+LK L+ +L + G  +        QG+T RW LAW+F 
Sbjct: 252 RDRIKFYTTMIGRKSSLKPLLQRLERFGENVKFLVHPLNQGKTKRWMLAWTFA 304

Probable methyltransferase.

Caenorhabditis briggsae (taxid: 6238)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	496
225427967	497	PREDICTED: methyltransferase-like protei	0.993	0.991	0.727	0.0
255574754	473	conserved hypothetical protein [Ricinus	0.933	0.978	0.710	0.0
224080596	443	predicted protein [Populus trichocarpa]	0.891	0.997	0.727	0.0
449454349	485	PREDICTED: methyltransferase-like protei	0.969	0.991	0.668	0.0
449510434	485	PREDICTED: methyltransferase-like protei	0.969	0.991	0.672	0.0
42569208	483	ribosomal RNA large subunit methyltransf	0.961	0.987	0.649	0.0
334184347	513	ribosomal RNA large subunit methyltransf	0.961	0.929	0.651	0.0
297821301	477	hypothetical protein ARALYDRAFT_480956 [	0.959	0.997	0.651	0.0
297744639	432	unnamed protein product [Vitis vinifera]	0.862	0.990	0.649	1e-180
356524986	490	PREDICTED: methyltransferase-like protei	0.973	0.985	0.621	1e-170

>gi|225427967|ref|XP_002277572.1| PREDICTED: methyltransferase-like protein 16-like [Vitis vinifera]

 Score =  748 bits (1931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/496 (72%), Positives = 413/496 (83%), Gaps = 3/496 (0%)

Query: 1   MGSKKRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNA 60
           MG KKRRR   ERP+IHP+NKYSENPPDFALLASLYPSF+PFVF +R GRP IDWTDFNA
Sbjct: 1   MGGKKRRRV--ERPSIHPRNKYSENPPDFALLASLYPSFKPFVFLNRAGRPTIDWTDFNA 58

Query: 61  TRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGF 120
           TRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSS+IIP TS +G+ V+GF
Sbjct: 59  TRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSDIIPKTSTDGNNVRGF 118

Query: 121 DIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSEST 180
           DIGTGANCIYPLLGASLLGWSFVG+D+TDVALEWAEKNVKSNPHISELIEIRKV++  ST
Sbjct: 119 DIGTGANCIYPLLGASLLGWSFVGTDVTDVALEWAEKNVKSNPHISELIEIRKVESDGST 178

Query: 181 PSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGE 240
           PS +    G+S   E   D+SG    + EP  S S +   G+  SYHGPPVL+G+++DGE
Sbjct: 179 PSGEGLHIGESFIVEGEKDLSGINAGDTEPLPSCSLDADLGSNKSYHGPPVLLGILKDGE 238

Query: 241 QFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWY 300
             DFC+CNPPFFE+MEEAGLNPKTSCGGTPEEMVC GGE+AFITRII+DSV LKQ+FRWY
Sbjct: 239 NLDFCMCNPPFFETMEEAGLNPKTSCGGTPEEMVCPGGEKAFITRIIDDSVILKQSFRWY 298

Query: 301 TSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKK 360
           TSMVG+K+NLK L+SKLR VGVTIVKTTEFVQGQTCRWG+AWSFVP ARK+I PHVA+K 
Sbjct: 299 TSMVGKKTNLKILVSKLRNVGVTIVKTTEFVQGQTCRWGIAWSFVPSARKLILPHVAKKN 358

Query: 361 NLSFMLEGVQRQFSALDVLQSIETFFSASGASCKLNASSFTVNITVSNDQCNTILKNEVN 420
           N SFMLEG+QRQFSA++VLQS+E+FF   GASCK NASSFTV++ +SND CN ILK EV 
Sbjct: 359 NQSFMLEGLQRQFSAINVLQSVESFFCTIGASCKSNASSFTVDVAISNDHCNAILKTEVQ 418

Query: 421 RVDEGPTSKHLEETSSSSSCLNASSTSLSFRTAVFQQIPGTLLVQGSLLHKDNPLPGLFS 480
             +E    ++++E    SS    S   L FR  VFQQIPGTLLV+GSL  +++P  G+F 
Sbjct: 419 GYNELNNYQYMQEICDGSS-FPPSFEELCFRILVFQQIPGTLLVRGSLKDRESPGSGVFW 477

Query: 481 SIFQQLEETLRFKFCR 496
           SIFQQLEE L+ KFCR
Sbjct: 478 SIFQQLEEVLKNKFCR 493

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574754|ref|XP_002528285.1| conserved hypothetical protein [Ricinus communis] gi|223532322|gb|EEF34123.1| conserved hypothetical protein [Ricinus communis]

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/477 (71%), Positives = 396/477 (83%), Gaps = 14/477 (2%)

Query: 1   MGSKKRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNA 60
           MGS  R +RR+ R TIHP+NKY+++PPDFALLASLYPSFEPF+FYSRDGRPRIDWTDFN+
Sbjct: 1   MGSNNRNKRRK-RATIHPRNKYADSPPDFALLASLYPSFEPFIFYSRDGRPRIDWTDFNS 59

Query: 61  TRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGF 120
           TRELTR+LLLHDH LNWWIPDGQLCPTVPNRSNYIHW+EDLLSS+IIP T+ NGD VKGF
Sbjct: 60  TRELTRLLLLHDHSLNWWIPDGQLCPTVPNRSNYIHWVEDLLSSDIIPKTNINGDTVKGF 119

Query: 121 DIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSEST 180
           DIGTGANCIYPLLGASLLGWSFVGSD+TDVA+EWAE+NVK+NPH+SELIE+RKV N + T
Sbjct: 120 DIGTGANCIYPLLGASLLGWSFVGSDVTDVAVEWAERNVKNNPHVSELIEVRKVTNCQGT 179

Query: 181 PSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGE 240
            S+++S   +S+  ES MD  G + E+              A   YHGPPVLVGV+++ E
Sbjct: 180 LSVEDSRNVESISCESKMDADGSVIEKL-----------VDANKKYHGPPVLVGVIKNDE 228

Query: 241 QFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWY 300
           +F+FC+CNPPFFESMEEAGLNPKTSCGGTPEEMVC GGE+AFI RIIEDSV LK++FRW+
Sbjct: 229 KFEFCMCNPPFFESMEEAGLNPKTSCGGTPEEMVCPGGEKAFIARIIEDSVILKESFRWF 288

Query: 301 TSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKK 360
           TSMVGRK+NLKFL S+LR+VGVTIVKTTEFVQGQTCRWGLAWSFVPPARKII PHV +K 
Sbjct: 289 TSMVGRKTNLKFLTSRLREVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIILPHVDDKS 348

Query: 361 NLSFMLEGVQRQFSALDVLQSIETFFSASGASCKLNASSFTVNITVSNDQCNTILKNEVN 420
            + FMLEG+QRQFSA+DVLQS+E+FF  +GASC+LN++SF V+IT S DQC+ ILKNE  
Sbjct: 349 IIPFMLEGLQRQFSAIDVLQSVESFFRTTGASCRLNSTSFAVDITASMDQCDAILKNEAK 408

Query: 421 RVDEGPTSKHLEET--SSSSSCLNASSTSLSFRTAVFQQIPGTLLVQGSLLHKDNPL 475
             D       LE T  S+SS+  +     L FR  VFQQIPGTLLV+GSL HKD+P+
Sbjct: 409 ESDGTANCDPLEGTSKSNSSTLQHPPLNKLCFRILVFQQIPGTLLVKGSLQHKDSPV 465

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080596|ref|XP_002306173.1| predicted protein [Populus trichocarpa] gi|222849137|gb|EEE86684.1| predicted protein [Populus trichocarpa]

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/466 (72%), Positives = 382/466 (81%), Gaps = 24/466 (5%)

Query: 4   KKRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRE 63
           KK +R+R ERPTIHPKNKYS+NPPDF++LASLYPS +PFVFYSRDGRPRIDWTD+N+TRE
Sbjct: 1   KKNKRKRPERPTIHPKNKYSDNPPDFSVLASLYPSLKPFVFYSRDGRPRIDWTDYNSTRE 60

Query: 64  LTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIG 123
           LTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSS+IIP  + N D V+GFDIG
Sbjct: 61  LTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSDIIPKNNNNDDIVRGFDIG 120

Query: 124 TGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSI 183
           TGANCIYPLLGASLLGW+FVGSD+TDVA+EWAEKNVK N HISELIEIRKV + +S  SI
Sbjct: 121 TGANCIYPLLGASLLGWTFVGSDVTDVAVEWAEKNVKCNQHISELIEIRKVTDCQSAISI 180

Query: 184 QESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFD 243
           ++S  G+SV  E+ MD                     G  + Y GPP+L+GVVRDGE+FD
Sbjct: 181 EDSNCGESVNCENKMD---------------------GNATKYSGPPLLLGVVRDGEKFD 219

Query: 244 FCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSM 303
           FC+CNPPFFE+MEEAGLNPKTSCGGTPEEMVC GGE+AFIT IIEDSV LK++FRW+TSM
Sbjct: 220 FCMCNPPFFETMEEAGLNPKTSCGGTPEEMVCPGGEKAFITCIIEDSVVLKESFRWFTSM 279

Query: 304 VGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKKNLS 363
           VGRK NLKFL SKLR+VGVTIVKTTEFVQGQTCRWGLAWSFVPP RKIISP V +K +LS
Sbjct: 280 VGRKVNLKFLTSKLREVGVTIVKTTEFVQGQTCRWGLAWSFVPPVRKIISPLV-QKNSLS 338

Query: 364 FMLE-GVQRQFSALDVLQSIETFFSASGASCKLNASSFTVNITVSNDQCNTILKNEVNRV 422
           F LE G+QRQFSA  VLQSIE+FF   GASCKLNASSF V+IT SNDQC  IL++E    
Sbjct: 339 FTLEQGLQRQFSAFHVLQSIESFFCLGGASCKLNASSFVVDITASNDQCKAILRDEAKHP 398

Query: 423 DEGPTSKHLEETSSSSSCLNASSTSLSFRTAVFQQIPGTLLVQGSL 468
           +   T   L E S SSS L+  S +LSF  +VFQQIPGTLLV+ SL
Sbjct: 399 NGAATCNPL-EASHSSSYLHPPSNNLSFCISVFQQIPGTLLVKASL 443

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454349|ref|XP_004144918.1| PREDICTED: methyltransferase-like protein 16 homolog [Cucumis sativus]

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/494 (66%), Positives = 388/494 (78%), Gaps = 13/494 (2%)

Query: 5   KRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATREL 64
           +++R+  E  TIHP+NKY+ENPPDFALLASLYPSF+PFV  S   RPRIDWTDFNATREL
Sbjct: 3   RKKRKTREAATIHPRNKYAENPPDFALLASLYPSFQPFV--SLHPRPRIDWTDFNATREL 60

Query: 65  TRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGT 124
           TRVLLLHDH L+WWIPDGQLCPTVPNRSNYIHW+EDLLSS+++   + +  +V+GFDIGT
Sbjct: 61  TRVLLLHDHALHWWIPDGQLCPTVPNRSNYIHWLEDLLSSDVVAKKNSDCGRVRGFDIGT 120

Query: 125 GANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQ 184
           GANCIYPLLGASLLGWSFVG+D+TDVALEWAE+NV SNPHISELIEIRKVD++    S +
Sbjct: 121 GANCIYPLLGASLLGWSFVGTDVTDVALEWAERNVTSNPHISELIEIRKVDDTSDDLSTE 180

Query: 185 ESLTGKSVQDESNMDMSGHMD-EEAEPSSSSSFNLPA-GAQSSYHGPPVLVGVVRDGEQF 242
                 SV  +S   +   MD  E  P   S  +  A   ++ YHGPP+L+GVV+DGE+F
Sbjct: 181 ---LHDSVAVDSECKIFNEMDGREIGPPLPSFLSKEAIHLETQYHGPPILLGVVKDGERF 237

Query: 243 DFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS 302
           DFC+CNPPFFESM+EAGLNPKTSCGGTP+EMVC GGERAFI+R+IEDS+ LKQTFRWYTS
Sbjct: 238 DFCMCNPPFFESMDEAGLNPKTSCGGTPQEMVCPGGERAFISRMIEDSIVLKQTFRWYTS 297

Query: 303 MVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKKNL 362
           M+G+KSNL FLISKL KVGVT+VKTTEFVQGQTCRWGLAWSF+  ARKIISPHV  K  L
Sbjct: 298 MIGKKSNLSFLISKLWKVGVTVVKTTEFVQGQTCRWGLAWSFMSTARKIISPHVTNKSIL 357

Query: 363 SFMLEGVQRQFSALDVLQSIETFFSASGASCKLNASSFTVNITVSNDQCNTILKNEVNRV 422
           SFMLEG+  Q SA+ +LQS+E F S  GASCKLNASSFTV+IT S D C  IL+N     
Sbjct: 358 SFMLEGLLSQVSAMSILQSVERFLSTGGASCKLNASSFTVDITASEDHCQAILENGACEE 417

Query: 423 DEGPTSKHLEETSSSSSCLNASSTSLSFRTAVFQQIPGTLLVQGSLLHKDNPLPGLFSSI 482
            +  +   LE++ +        ST L FR +VFQQIPGTLLV+GSL  K NP  GLFS I
Sbjct: 418 VKDASCVALEKSETQ------LSTDLCFRVSVFQQIPGTLLVKGSLHQKSNPSAGLFSLI 471

Query: 483 FQQLEETLRFKFCR 496
           F +LEE L+ +FC+
Sbjct: 472 FHRLEEFLKAEFCK 485

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449510434|ref|XP_004163663.1| PREDICTED: methyltransferase-like protein 16 homolog [Cucumis sativus]

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/494 (67%), Positives = 387/494 (78%), Gaps = 13/494 (2%)

Query: 5   KRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATREL 64
           +++R+  E  TIHP+NKY+ENPPDFALLASLYPSF+PFV  S   RPRIDWTDFNATREL
Sbjct: 3   RKKRKTREAATIHPRNKYAENPPDFALLASLYPSFQPFV--SLHPRPRIDWTDFNATREL 60

Query: 65  TRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGT 124
           TRVLLLHDH L+WWIPDGQLCPTVPNRSNYIHW+EDLLSS+I+   + +  +V+GFDIGT
Sbjct: 61  TRVLLLHDHALHWWIPDGQLCPTVPNRSNYIHWLEDLLSSDIVAKKNSDCGRVRGFDIGT 120

Query: 125 GANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQ 184
           GANCIYPLLGASLLGWSFVG+D+TDVALEWAE+NV SNPHISELIEIRKVD++    S +
Sbjct: 121 GANCIYPLLGASLLGWSFVGTDVTDVALEWAERNVTSNPHISELIEIRKVDDTSDDLSTE 180

Query: 185 ESLTGKSVQDESNMDMSGHMD-EEAEPSSSSSFNLPA-GAQSSYHGPPVLVGVVRDGEQF 242
                 SV  +S   +   MD  E  P   S  +  A   ++ YHGPP+L+GVV+DGE F
Sbjct: 181 ---LHDSVAVDSECKIFNEMDGREIGPPLPSFLSKEAIHLETRYHGPPILLGVVKDGEGF 237

Query: 243 DFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS 302
           DFC+CNPPFFESM+EAGLNPKTSCGGTP+EMVC GGERAFI+R+IEDS+ LKQTFRWYTS
Sbjct: 238 DFCMCNPPFFESMDEAGLNPKTSCGGTPQEMVCPGGERAFISRMIEDSIVLKQTFRWYTS 297

Query: 303 MVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKKNL 362
           M+G+KSNL FLISKL KVGVTIVKTTEFVQGQTCRWGLAWSF+  ARKIISPHV  K  L
Sbjct: 298 MIGKKSNLSFLISKLWKVGVTIVKTTEFVQGQTCRWGLAWSFMSTARKIISPHVTNKSIL 357

Query: 363 SFMLEGVQRQFSALDVLQSIETFFSASGASCKLNASSFTVNITVSNDQCNTILKNEVNRV 422
           SFMLEG+  Q SA+ +LQS+E F S  GASCKLNASSFTV+IT S D C  IL+N     
Sbjct: 358 SFMLEGLLSQVSAMSILQSVERFLSTGGASCKLNASSFTVDITASEDHCQAILENGACEE 417

Query: 423 DEGPTSKHLEETSSSSSCLNASSTSLSFRTAVFQQIPGTLLVQGSLLHKDNPLPGLFSSI 482
            +  +   LE++ +        ST L FR +VFQQIPGTLLV+GSL  K NP  GLFS I
Sbjct: 418 VKDASCVALEKSETQ------LSTDLCFRVSVFQQIPGTLLVKGSLHQKSNPSAGLFSLI 471

Query: 483 FQQLEETLRFKFCR 496
           F +LEE L+ +FC+
Sbjct: 472 FHRLEEFLKAEFCK 485

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569208|ref|NP_179703.2| ribosomal RNA large subunit methyltransferase F [Arabidopsis thaliana] gi|53850469|gb|AAU95411.1| At2g21070 [Arabidopsis thaliana] gi|55733759|gb|AAV59276.1| At2g21070 [Arabidopsis thaliana] gi|330252024|gb|AEC07118.1| ribosomal RNA large subunit methyltransferase F [Arabidopsis thaliana]

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/502 (64%), Positives = 384/502 (76%), Gaps = 25/502 (4%)

Query: 1   MGSKKRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNA 60
           M S K+R R E   T  P++KYS+NPPDFA LASLYPSF+PFVF+S   R RIDWTD+NA
Sbjct: 1   MRSGKKRARSEPGSTKQPRSKYSDNPPDFASLASLYPSFKPFVFFS-GSRARIDWTDYNA 59

Query: 61  TRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGF 120
           TRELTRVLLLHDHG+NWWIPDGQLCPTVPNRSNYIHWI DLLSS II +   +G KVKGF
Sbjct: 60  TRELTRVLLLHDHGVNWWIPDGQLCPTVPNRSNYIHWINDLLSSGIIQSLGGDGSKVKGF 119

Query: 121 DIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSEST 180
           DIGTGANCIYPLLGASL GWSFVGSD T VALEWAEKNV+SNPH S+LIEIR   +S+  
Sbjct: 120 DIGTGANCIYPLLGASLFGWSFVGSDFTVVALEWAEKNVQSNPHFSDLIEIR---DSKVP 176

Query: 181 PSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHG------PPVLVG 234
           P         SV +  N +    + EEAE        + A  +S YH       P VL+G
Sbjct: 177 PQCS------SVPEVENTEREKTIQEEAE--------ISATVKSDYHDNKSFIEPAVLLG 222

Query: 235 VVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALK 294
           VV++ E FDFC+ NPPFFE+ EEAGLNPKTSCGGTPEEMVC+GGE+AF++RII+DS  L+
Sbjct: 223 VVKENETFDFCMSNPPFFETFEEAGLNPKTSCGGTPEEMVCNGGEQAFVSRIIKDSAVLR 282

Query: 295 QTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISP 354
           Q FRWYTSM+G+K+NLK LISKL +VGVTIVKTTEFVQGQT RWGLAWSF+P ARKII+P
Sbjct: 283 QRFRWYTSMLGKKANLKLLISKLWEVGVTIVKTTEFVQGQTSRWGLAWSFMPIARKIIAP 342

Query: 355 HVAEKKNLSFMLEGVQRQFSALDVLQSIETFFSASGASCKLNASSFTVNITVSNDQCNTI 414
            V +K  LSFMLE ++RQ+SA+DVLQS+E FF + GASCKLN+S+F+V+I  SNDQCNTI
Sbjct: 343 PVVKKSVLSFMLECIKRQYSAVDVLQSVEEFFKSCGASCKLNSSTFSVDIVASNDQCNTI 402

Query: 415 LKNEVNRVDEGPTSKHLEETSSSSSCLNASSTSLSFRTAVFQQIPGTLLVQGSLLHKDNP 474
            KN++  VD    S   E+ S   S L     +LSFR  VFQQ+PGTLL++GSL  KD+P
Sbjct: 403 SKNDIADVD-SVRSHGYEKQSLDGSSLQVPEYNLSFRILVFQQMPGTLLIKGSLQQKDSP 461

Query: 475 LPGLFSSIFQQLEETLRFKFCR 496
           L GLFS +F  LEE+L+ KFCR
Sbjct: 462 LSGLFSRVFGSLEESLKSKFCR 483

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334184347|ref|NP_001189567.1| ribosomal RNA large subunit methyltransferase F [Arabidopsis thaliana] gi|330252026|gb|AEC07120.1| ribosomal RNA large subunit methyltransferase F [Arabidopsis thaliana]

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/502 (65%), Positives = 384/502 (76%), Gaps = 25/502 (4%)

Query: 1   MGSKKRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNA 60
           M S K+R R E   T  P++KYS+NPPDFA LASLYPSF+PFVF+S   R RIDWTD+NA
Sbjct: 1   MRSGKKRARSEPGSTKQPRSKYSDNPPDFASLASLYPSFKPFVFFS-GSRARIDWTDYNA 59

Query: 61  TRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGF 120
           TRELTRVLLLHDHG+NWWIPDGQLCPTVPNRSNYIHWI DLLSS II +   +G KVKGF
Sbjct: 60  TRELTRVLLLHDHGVNWWIPDGQLCPTVPNRSNYIHWINDLLSSGIIQSLGGDGSKVKGF 119

Query: 121 DIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSEST 180
           DIGTGANCIYPLLGASL GWSFVGSD T VALEWAEKNV+SNPH S+LIEIR   +S+  
Sbjct: 120 DIGTGANCIYPLLGASLFGWSFVGSDFTVVALEWAEKNVQSNPHFSDLIEIR---DSKVP 176

Query: 181 PSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHG------PPVLVG 234
           P         SV +  N +    + EEAE S        A  +S YH       P VL+G
Sbjct: 177 PQCS------SVPEVENTEREKTIQEEAEIS--------ATVKSDYHDNKSFIEPAVLLG 222

Query: 235 VVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALK 294
           VV++ E FDFC+ NPPFFE+ EEAGLNPKTSCGGTPEEMVC+GGE+AF++RII+DS  L+
Sbjct: 223 VVKENETFDFCMSNPPFFETFEEAGLNPKTSCGGTPEEMVCNGGEQAFVSRIIKDSAVLR 282

Query: 295 QTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISP 354
           Q FRWYTSM+G+K+NLK LISKL +VGVTIVKTTEFVQGQT RWGLAWSF+P ARKII+P
Sbjct: 283 QRFRWYTSMLGKKANLKLLISKLWEVGVTIVKTTEFVQGQTSRWGLAWSFMPIARKIIAP 342

Query: 355 HVAEKKNLSFMLEGVQRQFSALDVLQSIETFFSASGASCKLNASSFTVNITVSNDQCNTI 414
            V +K  LSFMLE ++RQ+SA+DVLQS+E FF + GASCKLN+S+F+V+I  SNDQCNTI
Sbjct: 343 PVVKKSVLSFMLECIKRQYSAVDVLQSVEEFFKSCGASCKLNSSTFSVDIVASNDQCNTI 402

Query: 415 LKNEVNRVDEGPTSKHLEETSSSSSCLNASSTSLSFRTAVFQQIPGTLLVQGSLLHKDNP 474
            KN++  VD    S   E+ S   S L     +LSFR  VFQQ+PGTLL++GSL  KD+P
Sbjct: 403 SKNDIADVD-SVRSHGYEKQSLDGSSLQVPEYNLSFRILVFQQMPGTLLIKGSLQQKDSP 461

Query: 475 LPGLFSSIFQQLEETLRFKFCR 496
           L GLFS +F  LEE+L+ KFCR
Sbjct: 462 LSGLFSRVFGSLEESLKSKFCR 483

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821301|ref|XP_002878533.1| hypothetical protein ARALYDRAFT_480956 [Arabidopsis lyrata subsp. lyrata] gi|297324372|gb|EFH54792.1| hypothetical protein ARALYDRAFT_480956 [Arabidopsis lyrata subsp. lyrata]

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/497 (65%), Positives = 386/497 (77%), Gaps = 21/497 (4%)

Query: 1   MGSKKRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNA 60
           M + K+R R E   T  P+NKYS+NPPDFA LASLYPSF+PFVF+S  GR RIDWTD+NA
Sbjct: 1   MRNGKKRGRSEPGSTKKPRNKYSDNPPDFASLASLYPSFKPFVFFS-GGRARIDWTDYNA 59

Query: 61  TRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGF 120
           TRELTR+LLLHDHG+NWWIPDGQLCPTVPNRSNYIHWI DLLSS +I +    G +VKGF
Sbjct: 60  TRELTRILLLHDHGVNWWIPDGQLCPTVPNRSNYIHWINDLLSSEVIQSL---GGEVKGF 116

Query: 121 DIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSEST 180
           DIGTGANCIYPLLGASL GWSFVGSD T VALEWAEKNVKSNPHIS+LIEIR       +
Sbjct: 117 DIGTGANCIYPLLGASLFGWSFVGSDFTAVALEWAEKNVKSNPHISDLIEIRDSKVLPQS 176

Query: 181 PSIQESLTGKSVQDESNMDMSGHMDEEAEPSSS-SSFNLPAGAQSSYHGPPVLVGVVRDG 239
            S+ ES            +++ H  EEAE S++  S NL    Q+ Y  P VL+GVV++ 
Sbjct: 177 SSVPES------------ELTIH--EEAEISATVQSINLVDDNQT-YTEPAVLLGVVKEN 221

Query: 240 EQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRW 299
           E FDFC+ NPPFFE+ EE+GLNPKTSCGGTPEEMVC+GGE+AF++ IIEDS  L+Q FRW
Sbjct: 222 ETFDFCMSNPPFFETFEESGLNPKTSCGGTPEEMVCNGGEQAFVSCIIEDSTVLRQRFRW 281

Query: 300 YTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEK 359
           YTSM+G+K+NLK LISKL +VGVTIVKTTEFVQGQT RWGLAWSF+P ARKII+P V +K
Sbjct: 282 YTSMLGKKANLKLLISKLWQVGVTIVKTTEFVQGQTSRWGLAWSFMPTARKIIAPPVVKK 341

Query: 360 KNLSFMLEGVQRQFSALDVLQSIETFFSASGASCKLNASSFTVNITVSNDQCNTILKNEV 419
             LSFMLEG++RQ+SA+DVLQS+E FF + GASCKLN+S+F+V+I  S+DQCN+I KN +
Sbjct: 342 SVLSFMLEGIKRQYSAVDVLQSVEEFFKSCGASCKLNSSTFSVDIVASDDQCNSISKNGI 401

Query: 420 NRVDEGPTSKHLEETSSSSSCLNASSTSLSFRTAVFQQIPGTLLVQGSLLHKDNPLPGLF 479
             VD    S   ++ S   S L     +LSFR  VFQQ+PGTLL++GSL  KD+PL GLF
Sbjct: 402 TDVDS-VRSYGYDKQSLDGSSLQVPEDNLSFRILVFQQMPGTLLIKGSLQQKDSPLSGLF 460

Query: 480 SSIFQQLEETLRFKFCR 496
           S +F  LEE+L+ KFCR
Sbjct: 461 SVVFGCLEESLKSKFCR 477

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744639|emb|CBI37901.3| unnamed protein product [Vitis vinifera]

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 322/496 (64%), Positives = 368/496 (74%), Gaps = 68/496 (13%)

Query: 1   MGSKKRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNA 60
           MG KKRRR   ERP+IHP+NKYSENPPDFALLASLYPSF+PFVF +R GRP IDWTDFNA
Sbjct: 1   MGGKKRRR--VERPSIHPRNKYSENPPDFALLASLYPSFKPFVFLNRAGRPTIDWTDFNA 58

Query: 61  TRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGF 120
           TRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSS+IIP TS +G+ V+GF
Sbjct: 59  TRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSDIIPKTSTDGNNVRGF 118

Query: 121 DIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSEST 180
           DIGTGANCIYPLLGASLLGWSFVG+D+TDVALEWAEKNVKSNPHISELIEIRKV+     
Sbjct: 119 DIGTGANCIYPLLGASLLGWSFVGTDVTDVALEWAEKNVKSNPHISELIEIRKVE----- 173

Query: 181 PSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGE 240
                                       +P  S S +   G+  SYHGPPVL+G+++D  
Sbjct: 174 ----------------------------KPLPSCSLDADLGSNKSYHGPPVLLGILKD-- 203

Query: 241 QFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWY 300
                                         EEMVC GGE+AFITRII+DSV LKQ+FRWY
Sbjct: 204 ------------------------------EEMVCPGGEKAFITRIIDDSVILKQSFRWY 233

Query: 301 TSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKK 360
           TSMVG+K+NLK L+SKLR VGVTIVKTTEFVQGQTCRWG+AWSFVP ARK+I PHVA+K 
Sbjct: 234 TSMVGKKTNLKILVSKLRNVGVTIVKTTEFVQGQTCRWGIAWSFVPSARKLILPHVAKKN 293

Query: 361 NLSFMLEGVQRQFSALDVLQSIETFFSASGASCKLNASSFTVNITVSNDQCNTILKNEVN 420
           N SFMLEG+QRQFSA++VLQS+E+FF   GASCK NASSFTV++ +SND CN ILK EV 
Sbjct: 294 NQSFMLEGLQRQFSAINVLQSVESFFCTIGASCKSNASSFTVDVAISNDHCNAILKTEVQ 353

Query: 421 RVDEGPTSKHLEETSSSSSCLNASSTSLSFRTAVFQQIPGTLLVQGSLLHKDNPLPGLFS 480
             +E    ++++E    SS    S   L FR  VFQQIPGTLLV+GSL  +++P  G+F 
Sbjct: 354 GYNELNNYQYMQEICDGSS-FPPSFEELCFRILVFQQIPGTLLVRGSLKDRESPGSGVFW 412

Query: 481 SIFQQLEETLRFKFCR 496
           SIFQQLEE L+ KFCR
Sbjct: 413 SIFQQLEEVLKNKFCR 428

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524986|ref|XP_003531108.1| PREDICTED: methyltransferase-like protein 16-like [Glycine max]

 Score =  605 bits (1561), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 309/497 (62%), Positives = 374/497 (75%), Gaps = 14/497 (2%)

Query: 2   GSKKRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFV-FYSRDGRPRIDWTDFNA 60
           GSKKR+R+R E           ENPPDFALLASLYP F PFV F     RP IDWTDFNA
Sbjct: 3   GSKKRKRKRNEEQRGGTVYSERENPPDFALLASLYPEFHPFVQFLHSHSRPTIDWTDFNA 62

Query: 61  TRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGF 120
           TR+LTRVLL H H LNWWIPDG LCPTVPNR NYIHW++ LLSS+IIP T  +  K +GF
Sbjct: 63  TRQLTRVLLHHRHALNWWIPDGNLCPTVPNRCNYIHWLQHLLSSDIIPNTISSDGKFRGF 122

Query: 121 DIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSEST 180
           DIGTGA+CIYPLLGASL GWSFVGSD+T+VA+EWAE+NV SNPHIS+LIEIRKV ++ S 
Sbjct: 123 DIGTGASCIYPLLGASLHGWSFVGSDVTNVAIEWAERNVNSNPHISQLIEIRKVQDNASD 182

Query: 181 P--SIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRD 238
           P   ++ES+ G       N+ + G  D E  P      +L A    +YHGPP+LVGVVRD
Sbjct: 183 PCVEVEESVNG------DNIALCGSTDVEVAPLP---LDLHACENRNYHGPPILVGVVRD 233

Query: 239 GEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFR 298
            E+FDFC+CNPPFFES+EEAGLNPKTSCGGT +EMVC GGERAFITRIIEDS  LK  FR
Sbjct: 234 DEKFDFCMCNPPFFESLEEAGLNPKTSCGGTSQEMVCPGGERAFITRIIEDSTQLKDQFR 293

Query: 299 WYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAE 358
           W+TSMVG+KSNLK+L SKL +VGV +VKTTEFVQG+TCRWGLAWSF+ P +K     + +
Sbjct: 294 WFTSMVGKKSNLKYLTSKLWEVGVAVVKTTEFVQGRTCRWGLAWSFLTPLQK-TPVSLPD 352

Query: 359 KKNLSFMLEGVQRQFSALDVLQSIETFFSASGASCKLNASSFTVNITVSNDQCNTILKNE 418
           KKN SFMLEG+QRQ++A++VL+++ ++FS+ G SC LN SSFTV++  + D C+ IL+N 
Sbjct: 353 KKNTSFMLEGLQRQYAAINVLEAVNSYFSSHGLSCTLNTSSFTVDVAAAKDDCDLILRNG 412

Query: 419 VNRVDEGPTSKHLEETSSSSSCLNASSTSLSFRTAVFQQIPGTLLVQGSLLHKDNPLPGL 478
           +  +++    +   E SS SS LN SS  L F  +VFQQIPGTLLV+GSL  +++ L G 
Sbjct: 413 LPIINKSIDCQPTREASSGSS-LNLSSERLCFCISVFQQIPGTLLVKGSLQDRNSTLSGA 471

Query: 479 FSSIFQQLEETLRFKFC 495
           FS IFQ+LEE LR KFC
Sbjct: 472 FSMIFQKLEEALRDKFC 488

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	496
DICTYBASE|DDB_G0275203	568	DDB_G0275203 "Putative methylt	0.411	0.359	0.413	5.4e-63
ZFIN|ZDB-GENE-040801-130	471	mettl16 "methyltransferase lik	0.304	0.320	0.462	9.9e-60
MGI|MGI:1914743	553	Mettl16 "methyltransferase lik	0.310	0.278	0.465	2.8e-58
UNIPROTKB|Q86W50	562	METTL16 "Methyltransferase-lik	0.312	0.275	0.462	1.7e-57
UNIPROTKB|E2QY36	561	METTL16 "Uncharacterized prote	0.312	0.276	0.456	7e-57
UNIPROTKB|E1BCU7	561	METTL16 "Uncharacterized prote	0.310	0.274	0.459	1.3e-56
UNIPROTKB|Q5ZIA0	558	METTL16 "Methyltransferase-lik	0.306	0.272	0.447	1.2e-54
RGD|1593242	523	Mettl16 "methyltransferase lik	0.310	0.294	0.465	1.3e-49
UNIPROTKB|F1RHG3	565	F1RHG3 "Uncharacterized protei	0.312	0.274	0.456	3.8e-48
UNIPROTKB|F1RHG4	605	F1RHG4 "Uncharacterized protei	0.312	0.256	0.456	1.4e-47

DICTYBASE|DDB_G0275203 DDB_G0275203 "Putative methyltransferase METT10D" [Dictyostelium discoideum (taxid:44689)]

 Score = 402 (146.6 bits), Expect = 5.4e-63, Sum P(2) = 5.4e-63
 Identities = 86/208 (41%), Positives = 121/208 (58%)

Query:    15 TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
             ++H  N Y  NPP+F LLAS YP+F+ ++    +    IDW D NAT+ELTRVLL HD G
Sbjct:    41 SMHINNFYRYNPPNFKLLASKYPTFDKYIINKTEKIYNIDWKDSNATKELTRVLLDHDFG 100

Query:    75 LNWWIPDGQLCPTVPNRSNYIHWIEDLLSS-NIIPTTSRNGDKV-KGFDIGTGANCIYPL 132
             L   +PD  LCPT+  R NY++WI D L +  II   + N +K+ KG DIGTG +CI+PL
Sbjct:   101 LRIELPDNYLCPTLTLRINYLYWISDQLKNLKIILNDNDNDNKIIKGIDIGTGTSCIFPL 160

Query:   133 LGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKS 191
             LGA L   WSF+G D+ D  LE+A+ N+  N   S++   +   NS+    +     G +
Sbjct:   161 LGAKLFNNWSFIGIDIDDKVLEYAQNNITINSLNSKITLFKNEKNSDILLKLLNYKEGSN 220

Query:   192 VQDESNMD-MSGHMDEEAEPSSSSSFNL 218
               + SN D    H D++ +    + F L
Sbjct:   221 TFNSSNDDHQDNHDDDDDDEEYFADFCL 248

GO:0032259 "methylation" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

ZFIN|ZDB-GENE-040801-130 mettl16 "methyltransferase like 16" [Danio rerio (taxid:7955)]

 Score = 372 (136.0 bits), Expect = 9.9e-60, Sum P(2) = 9.9e-60
 Identities = 74/160 (46%), Positives = 104/160 (65%)

Query:    15 TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
             ++HP+N+Y + PPDF  LAS YP F+  V  +  GR  +++ D  A R LT  LL  D G
Sbjct:     6 SMHPRNRYKDKPPDFVYLASKYPEFQKHVQTTLTGRVTLNFKDPEAVRALTCTLLKEDFG 65

Query:    75 LNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLG 134
             L   IP  +L PTVP R NYIHW+EDL+           G+  +G DIGTGA+CIYPLLG
Sbjct:    66 LTIEIPLERLIPTVPLRLNYIHWVEDLIGGQ--------GNPQRGIDIGTGASCIYPLLG 117

Query:   135 ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKV 174
             A++ GW F+ +++ D+   +A+KNV+ N H++ELI++ KV
Sbjct:   118 ATMNGWFFLATEVDDICFNYAKKNVEQN-HLAELIKVVKV 156

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

MGI|MGI:1914743 Mettl16 "methyltransferase like 16" [Mus musculus (taxid:10090)]

 Score = 363 (132.8 bits), Expect = 2.8e-58, Sum P(2) = 2.8e-58
 Identities = 75/161 (46%), Positives = 108/161 (67%)

Query:    15 TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
             ++H +N+Y + PPDFA LAS YP F+  +  + +GR  +++ D  A R LT  LL  D G
Sbjct:     6 SMHARNRYKDKPPDFAYLASKYPDFKQHIQINLNGRVSLNFKDPEAVRALTCTLLREDFG 65

Query:    75 LNWWIPDGQLCPTVPNRSNYIHWIEDLLS-SNIIPTTSRNGDKVKGFDIGTGANCIYPLL 133
             L+  IP  +L PTVP R NYIHW+EDL+   +   TT R     +G DIGTGA+CIYPLL
Sbjct:    66 LSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKTTLR-----RGIDIGTGASCIYPLL 120

Query:   134 GASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKV 174
             GA+L GW F+ +++ D+   +A+KNV+ N ++S+LI++ KV
Sbjct:   121 GATLNGWYFLATEVDDMCFNYAKKNVEQN-NLSDLIKVVKV 160

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|Q86W50 METTL16 "Methyltransferase-like protein 16" [Homo sapiens (taxid:9606)]

 Score = 361 (132.1 bits), Expect = 1.7e-57, Sum P(2) = 1.7e-57
 Identities = 74/160 (46%), Positives = 105/160 (65%)

Query:    15 TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
             ++H +N+Y + PPDFA LAS YP F+  V  + +GR  +++ D  A R LT  LL  D G
Sbjct:     6 SMHARNRYKDKPPDFAYLASKYPDFKQHVQINLNGRVSLNFKDPEAVRALTCTLLREDFG 65

Query:    75 LNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLG 134
             L+  IP  +L PTVP R NYIHW+EDL+        S      +G DIGTGA+CIYPLLG
Sbjct:    66 LSIDIPLERLIPTVPLRLNYIHWVEDLIGHQ----DSDKSTLRRGIDIGTGASCIYPLLG 121

Query:   135 ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKV 174
             A+L GW F+ +++ D+   +A+KNV+ N ++S+LI++ KV
Sbjct:   122 ATLNGWYFLATEVDDMCFNYAKKNVEQN-NLSDLIKVVKV 160

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|E2QY36 METTL16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 355 (130.0 bits), Expect = 7.0e-57, Sum P(2) = 7.0e-57
 Identities = 73/160 (45%), Positives = 103/160 (64%)

Query:    15 TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
             ++H +N+Y + PPDFA LAS YP F+  V  +  GR  +++ D  A R LT  LL  D G
Sbjct:     6 SMHARNRYKDKPPDFAYLASKYPDFKQHVQINLSGRVSLNFKDPEAVRALTCTLLKEDFG 65

Query:    75 LNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLG 134
             L+  IP  +L PTVP R NYIHW+EDL+        S      +G DIGTGA+CIYPLLG
Sbjct:    66 LSIDIPLERLIPTVPLRLNYIHWVEDLIGHQ----GSDKSTLRRGIDIGTGASCIYPLLG 121

Query:   135 ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKV 174
              +L GW F+ +++ D+   +A+KNV+ N ++S+LI++ KV
Sbjct:   122 TTLNGWYFLATEVDDMCFNYAKKNVEQN-NLSDLIKVVKV 160

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|E1BCU7 METTL16 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 358 (131.1 bits), Expect = 1.3e-56, Sum P(2) = 1.3e-56
 Identities = 74/161 (45%), Positives = 107/161 (66%)

Query:    15 TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
             ++H +N+Y + PPDFA LA+ YP F+  V  + +GR  +++ D  A R LT  LL  D G
Sbjct:     6 SMHARNRYKDKPPDFAYLATKYPDFKQHVQINLNGRVSLNFKDPEAVRALTCTLLREDFG 65

Query:    75 LNWWIPDGQLCPTVPNRSNYIHWIEDLLS-SNIIPTTSRNGDKVKGFDIGTGANCIYPLL 133
             L+  IP  +L PTVP R NYIHW+EDL+   N   +T R     +G DIGTGA+CIYPLL
Sbjct:    66 LSIDIPLERLIPTVPLRLNYIHWVEDLIGHQNSDKSTLR-----RGIDIGTGASCIYPLL 120

Query:   134 GASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKV 174
             G +L GW F+ +++ D+   +A+KNV+ N ++S+LI++ KV
Sbjct:   121 GTTLNGWYFLATEVDDMCFNYAKKNVEQN-NLSDLIKVVKV 160

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|Q5ZIA0 METTL16 "Methyltransferase-like protein 16" [Gallus gallus (taxid:9031)]

 Score = 344 (126.2 bits), Expect = 1.2e-54, Sum P(2) = 1.2e-54
 Identities = 73/163 (44%), Positives = 104/163 (63%)

Query:    15 TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
             ++H +N+Y + PPDFA LA  YP F   V  +  GR  +++ D  A R LT  LL  D G
Sbjct:     6 SMHARNRYKDKPPDFAYLAGKYPEFRQHVQTTLAGRVSLNFKDPEAVRALTCTLLKEDFG 65

Query:    75 LNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKV---KGFDIGTGANCIYP 131
             L   IP  +L PTVP R NYIHW+EDL+         ++ DK    +G DIGTGA+CIYP
Sbjct:    66 LTIDIPLERLIPTVPLRLNYIHWVEDLIGH-------QDADKRVLRRGIDIGTGASCIYP 118

Query:   132 LLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKV 174
             LLG++L GW F+ +++ D+   +A+KNV+ N ++S+LI++ KV
Sbjct:   119 LLGSTLNGWYFLATEVDDMCFNYAKKNVEQN-NLSDLIKVVKV 160

GO:0008168 "methyltransferase activity" evidence=IEA

RGD|1593242 Mettl16 "methyltransferase like 16" [Rattus norvegicus (taxid:10116)]

 Score = 363 (132.8 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
 Identities = 75/161 (46%), Positives = 108/161 (67%)

Query:    15 TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
             ++H +N+Y + PPDFA LAS YP F+  +  + +GR  +++ D  A R LT  LL  D G
Sbjct:     6 SMHARNRYKDKPPDFAYLASKYPDFKQHIQINLNGRVSLNFKDPEAVRALTCTLLREDFG 65

Query:    75 LNWWIPDGQLCPTVPNRSNYIHWIEDLLS-SNIIPTTSRNGDKVKGFDIGTGANCIYPLL 133
             L+  IP  +L PTVP R NYIHW+EDL+   +   TT R     +G DIGTGA+CIYPLL
Sbjct:    66 LSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKTTLR-----RGIDIGTGASCIYPLL 120

Query:   134 GASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKV 174
             GA+L GW F+ +++ D+   +A+KNV+ N ++S+LI++ KV
Sbjct:   121 GATLNGWYFLATEVDDMCFNYAKKNVEQN-NLSDLIKVVKV 160

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|F1RHG3 F1RHG3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 358 (131.1 bits), Expect = 3.8e-48, Sum P(2) = 3.8e-48
 Identities = 73/160 (45%), Positives = 105/160 (65%)

Query:    15 TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
             ++H +N+Y + PPDFA LAS YP F+  V  + +GR  +++ D  A R LT  LL  D G
Sbjct:     6 SMHARNRYKDKPPDFAYLASKYPDFKQHVQINLNGRVSLNFKDPEAVRALTCTLLREDFG 65

Query:    75 LNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLG 134
             L+  IP  +L PTVP R NYIHW+EDL+  +     S      +G DIGTGA+CIYPLLG
Sbjct:    66 LSIDIPLERLIPTVPLRLNYIHWVEDLIGHH----DSDKSTLRRGIDIGTGASCIYPLLG 121

Query:   135 ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKV 174
              +L GW F+ +++ D+   +A+KNV+ N ++S+LI++ KV
Sbjct:   122 TTLNGWYFLATEVDDMCFNYAKKNVEQN-NLSDLIKVVKV 160

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|F1RHG4 F1RHG4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 358 (131.1 bits), Expect = 1.4e-47, Sum P(2) = 1.4e-47
 Identities = 73/160 (45%), Positives = 105/160 (65%)

Query:    15 TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
             ++H +N+Y + PPDFA LAS YP F+  V  + +GR  +++ D  A R LT  LL  D G
Sbjct:     6 SMHARNRYKDKPPDFAYLASKYPDFKQHVQINLNGRVSLNFKDPEAVRALTCTLLREDFG 65

Query:    75 LNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLG 134
             L+  IP  +L PTVP R NYIHW+EDL+  +     S      +G DIGTGA+CIYPLLG
Sbjct:    66 LSIDIPLERLIPTVPLRLNYIHWVEDLIGHH----DSDKSTLRRGIDIGTGASCIYPLLG 121

Query:   135 ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKV 174
              +L GW F+ +++ D+   +A+KNV+ N ++S+LI++ KV
Sbjct:   122 TTLNGWYFLATEVDDMCFNYAKKNVEQN-NLSDLIKVVKV 160

GO:0008168 "methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691
4th Layer	2.1.1.181	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.IV.1063.1	hypothetical protein (443 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pg.C_scaffold_10596000001	Predicted protein (480 aa)	•		•						0.430

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	496
pfam05971	299	pfam05971, Methyltransf_10, Protein of unknown fun	2e-86
PRK11727	321	PRK11727, PRK11727, 23S rRNA mA1618 methyltransfer	1e-77
COG3129	292	COG3129, COG3129, Predicted SAM-dependent methyltr	2e-61

>gnl|CDD|218833 pfam05971, Methyltransf_10, Protein of unknown function (DUF890)

 Score =  267 bits (684), Expect = 2e-86
 Identities = 122/355 (34%), Positives = 175/355 (49%), Gaps = 78/355 (21%)

Query: 10  REERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLL 69
              +  +HP+N++     DFA L S+YP  +  V  + +GR  I++ D  A + L + LL
Sbjct: 1   MALKSGLHPRNRHKGRY-DFAYLISVYPELKQHVQLNPNGRQSINFADPEAVKALNKALL 59

Query: 70  LHDHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLL--SSNIIPTTSRNGDKVKGFDIGTGA 126
              +G+  W IPDG LCP VP R++YIHW+ DLL    + IPT  R        DIGTGA
Sbjct: 60  REFYGVSIWDIPDGFLCPPVPGRADYIHWVADLLGHQDSDIPTLRR------ALDIGTGA 113

Query: 127 NCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQES 186
           NCIYPLLG +  GW FVGS++   +L  A+  V++NP++S+ IE+R+             
Sbjct: 114 NCIYPLLGVTEYGWRFVGSEVDPQSLNSAKAIVEANPNLSDAIELRRQ------------ 161

Query: 187 LTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCI 246
                                  P S+  FN                G++ + E++DF +
Sbjct: 162 -----------------------PQSTLIFN----------------GLIGENERYDFTL 182

Query: 247 CNPPFFESMEEA-----------GLN------PKTSCGGTPEEMVCSGGERAFITRIIED 289
           CNPPF  S+ EA           G        P  + GG   E+ C GGE AFI ++IE+
Sbjct: 183 CNPPFHASLAEAKGGSSRKPTNLGRPNQTLSPPSLNFGGQIAELWCEGGEAAFIKKMIEE 242

Query: 290 SVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSF 344
           S+   +  RW+T++V +  NL  L  +LR +G   V  TE  QGQ     +AWSF
Sbjct: 243 SLQFAKQVRWFTTLVSKGCNLPPLKEELRILGAPKVTVTEMAQGQKQSRFIAWSF 297

This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of this family is unknown. Length = 299

>gnl|CDD|236964 PRK11727, PRK11727, 23S rRNA mA1618 methyltransferase; Provisional

 Score =  245 bits (628), Expect = 1e-77
 Identities = 119/367 (32%), Positives = 172/367 (46%), Gaps = 75/367 (20%)

Query: 1   MGSKKRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNA 60
                +++   ++P +HP+N++     DFA L   +P  +PFV  +  G   ID+ +  A
Sbjct: 1   RTKSNKKKMSAQKPGLHPRNRHR-GRYDFAALIQSHPELKPFVILNPYGEQSIDFANPLA 59

Query: 61  TRELTRVLLLHDHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLSS---NIIPTTSRNGDK 116
            + L + LL H +G+ +W IP G LCP +P R++YIH + DLL+     +IP     G  
Sbjct: 60  VKALNKALLAHFYGVAHWDIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPR----GAN 115

Query: 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176
           V+  DIG GANCIYPL+G    GW FVGSD+   AL  A+  + +NP ++  I +R   +
Sbjct: 116 VRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKD 175

Query: 177 SESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVV 236
           S++                                                   +  G++
Sbjct: 176 SKA---------------------------------------------------IFKGII 184

Query: 237 RDGEQFDFCICNPPFFESMEEA-----------GLNPKTSC----GGTPEEMVCSGGERA 281
              E+FD  +CNPPF  S  EA           GLN         GG   E+ C GGE A
Sbjct: 185 HKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVA 244

Query: 282 FITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLA 341
           FI R+IE+S A  +   W+TS+V +K NL  L   L+KVG   VKT E  QGQ     +A
Sbjct: 245 FIKRMIEESKAFAKQVLWFTSLVSKKENLPPLYRALKKVGAVEVKTIEMAQGQKQSRFIA 304

Query: 342 WSFVPPA 348
           W+F+   
Sbjct: 305 WTFLDDE 311

Length = 321

>gnl|CDD|225671 COG3129, COG3129, Predicted SAM-dependent methyltransferase [General function prediction only]

 Score =  202 bits (515), Expect = 2e-61
 Identities = 95/330 (28%), Positives = 149/330 (45%), Gaps = 73/330 (22%)

Query: 37  PSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWW-IPDGQLCPTVPNRSNYI 95
           P    F+  +  GR  ID+ +  A + L + LL H + + +W IP+G LCP VP R++YI
Sbjct: 2   PELILFLRLTPAGRQSIDFANPLAVKALNKALLAHFYAVRYWDIPEGFLCPPVPGRADYI 61

Query: 96  HWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWA 155
           H + DLL+S    +    G  ++  DIG GANCIYPL+G    GW FVGS++   +L  A
Sbjct: 62  HHLADLLAST---SGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSA 118

Query: 156 EKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSS 215
           +  + +NP +   I +R+  +S++                                    
Sbjct: 119 KAIISANPGLERAIRLRRQKDSDA------------------------------------ 142

Query: 216 FNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEA---------GL------ 260
                          +  G++   E++D  +CNPPF +S  +A          L      
Sbjct: 143 ---------------IFNGIIGKNERYDATLCNPPFHDSAADARAGSQRKRRNLGGELGP 187

Query: 261 ---NPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKL 317
                  + GG  +E+ C GGE AFI +++E+S A  +   W+T+++ + SNL  L   L
Sbjct: 188 TNKLDALNFGGQQQELWCEGGEVAFIKKMVEESRAFAKQVFWFTTLISKGSNLPPLYRAL 247

Query: 318 RKVGVTIVKTTEFVQGQTCRWGLAWSFVPP 347
             VG   V   E  QGQ     +AW+F+  
Sbjct: 248 TDVGAVKVVKKEMAQGQKQSRFIAWTFMDD 277

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	496
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	100.0
KOG2912	419	consensus Predicted DNA methylase [Function unknow	100.0
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	100.0
COG3129	292	Predicted SAM-dependent methyltransferase [General	100.0
COG2890	280	HemK Methylase of polypeptide chain release factor	100.0
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.97
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.97
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.96
KOG2904	328	consensus Predicted methyltransferase [General fun	99.94
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.94
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.93
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.93
PLN02672	1082	methionine S-methyltransferase	99.93
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.92
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.91
COG4123	248	Predicted O-methyltransferase [General function pr	99.85
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.8
PRK14967	223	putative methyltransferase; Provisional	99.71
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.64
PRK14968	188	putative methyltransferase; Provisional	99.6
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.6
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.58
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.57
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	99.52
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.43
PHA03412	241	putative methyltransferase; Provisional	99.42
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.41
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.35
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.35
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.33
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.33
PHA03411	279	putative methyltransferase; Provisional	99.3
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.27
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.27
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.27
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.26
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.22
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.22
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.2
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.18
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.18
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.18
PLN02336	475	phosphoethanolamine N-methyltransferase	99.13
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.12
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.12
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.1
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.08
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.08
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.05
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.04
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.99
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	98.96
PLN02490	340	MPBQ/MSBQ methyltransferase	98.96
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.95
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.93
PLN02244	340	tocopherol O-methyltransferase	98.91
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.9
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.9
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.88
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.87
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.86
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.86
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.86
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.86
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.85
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.85
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.83
PRK07402	196	precorrin-6B methylase; Provisional	98.82
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.82
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.82
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.82
PRK04457	262	spermidine synthase; Provisional	98.81
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.78
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.77
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.76
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.76
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.72
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.72
TIGR00438	188	rrmJ cell division protein FtsJ.	98.72
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.71
PRK12335	287	tellurite resistance protein TehB; Provisional	98.7
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.7
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.69
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.69
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.68
PRK11207	197	tellurite resistance protein TehB; Provisional	98.68
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.67
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.67
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.66
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.66
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.65
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.64
PRK06922	677	hypothetical protein; Provisional	98.63
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.62
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.61
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.61
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.61
PRK00811	283	spermidine synthase; Provisional	98.6
PRK08317	241	hypothetical protein; Provisional	98.6
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.58
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.58
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.58
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.58
PRK03612	521	spermidine synthase; Provisional	98.56
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.54
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.52
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.5
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.46
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.45
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.45
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.45
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.44
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.43
PRK04266	226	fibrillarin; Provisional	98.43
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	98.42
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.42
PRK06202	232	hypothetical protein; Provisional	98.41
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	98.41
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.41
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.41
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.39
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.39
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.38
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.36
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.35
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.35
PLN03075	296	nicotianamine synthase; Provisional	98.35
KOG1271	227	consensus Methyltransferases [General function pre	98.34
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.34
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.32
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.3
PRK01581	374	speE spermidine synthase; Validated	98.29
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.27
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.27
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.26
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.23
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.2
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.19
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.19
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.16
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.15
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.15
PLN02366	308	spermidine synthase	98.15
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.15
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.14
COG4122	219	Predicted O-methyltransferase [General function pr	98.12
PLN02476	278	O-methyltransferase	98.1
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.09
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.07
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.06
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.05
PLN02336	475	phosphoethanolamine N-methyltransferase	98.03
PRK05785	226	hypothetical protein; Provisional	98.02
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.98
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	97.98
TIGR03438	301	probable methyltransferase. This model represents	97.98
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	97.93
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	97.91
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.88
COG2521	287	Predicted archaeal methyltransferase [General func	97.86
COG1041	347	Predicted DNA modification methylase [DNA replicat	97.84
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.82
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	97.81
PLN02589	247	caffeoyl-CoA O-methyltransferase	97.8
COG0742	187	N6-adenine-specific methylase [DNA replication, re	97.78
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	97.77
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	97.75
PLN02823	336	spermine synthase	97.72
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.68
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	97.65
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	97.65
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	97.62
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	97.61
KOG2899	288	consensus Predicted methyltransferase [General fun	97.61
COG0286	489	HsdM Type I restriction-modification system methyl	97.58
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.51
PRK13255	218	thiopurine S-methyltransferase; Reviewed	97.51
PTZ00146	293	fibrillarin; Provisional	97.5
PRK04148	134	hypothetical protein; Provisional	97.44
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.43
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.43
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.36
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	97.35
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	97.24
KOG3010	261	consensus Methyltransferase [General function pred	97.2
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.1
PF13679	141	Methyltransf_32: Methyltransferase domain	97.1
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	97.09
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	97.08
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.05
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.04
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	96.87
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.82
KOG4300	252	consensus Predicted methyltransferase [General fun	96.63
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.62
PRK10742	250	putative methyltransferase; Provisional	96.57
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	96.53
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	96.47
PRK13256	226	thiopurine S-methyltransferase; Reviewed	96.41
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	96.39
COG3897	218	Predicted methyltransferase [General function pred	96.36
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	96.31
COG4076	252	Predicted RNA methylase [General function predicti	96.29
COG2520	341	Predicted methyltransferase [General function pred	96.28
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	96.05
KOG2730	263	consensus Methylase [General function prediction o	96.04
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	95.95
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	95.9
KOG1501	636	consensus Arginine N-methyltransferase [General fu	95.65
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.6
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	95.42
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	95.37
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	95.06
PLN02232	160	ubiquinone biosynthesis methyltransferase	95.02
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	95.02
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	94.74
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	94.38
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	94.32
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	94.28
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	94.06
PF07669	106	Eco57I: Eco57I restriction-modification methylase;	94.05
KOG2361	264	consensus Predicted methyltransferase [General fun	93.98
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	93.91
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	93.76
KOG2671	421	consensus Putative RNA methylase [Replication, rec	93.72
PRK11524	284	putative methyltransferase; Provisional	93.34
TIGR00497	501	hsdM type I restriction system adenine methylase (	93.24
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	92.81
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	92.72
KOG3115	249	consensus Methyltransferase-like protein [General	92.69
KOG4058	199	consensus Uncharacterized conserved protein [Funct	92.47
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	92.29
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	92.21
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	91.76
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	91.7
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	91.55
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	90.9
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	90.63
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	90.39
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	89.82
PRK13699	227	putative methylase; Provisional	89.71
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	89.58
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	89.44
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	89.38
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	88.98
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	88.45
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	88.13
PRK11524	284	putative methyltransferase; Provisional	87.49
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	84.54
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	82.69
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	81.38
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	80.87
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	80.86
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	80.14

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=100.00  E-value=1.6e-81  Score=633.40  Aligned_cols=278  Identities=51%  Similarity=0.945  Sum_probs=175.9

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHhhCCCccccccccCCCCcceecCChhhHHHHHHHHHhHhcCcE-EEecCCCeeCCCCCc
Q 010968           13 RPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLN-WWIPDGQLCPTVPNR   91 (496)
Q Consensus        13 ~~~mHprN~y~~~~pDF~~La~~yP~f~~~v~~~~~G~~~IDf~d~~A~r~Lt~aLL~~ffGL~-~~Vp~g~LiPrvP~R   91 (496)
                      +..|||||+|++ +|||++|+++||+|++||..+.+|+.+|||+|++|+++||++||++||||+ |+||+|+|||+||+|
T Consensus         4 ~~~mHprN~~~~-~~dF~~L~~~~p~l~~~v~~~~~g~~~idF~~~~Av~~Ln~aLLk~dfgl~~wdiP~~~LcP~iP~R   82 (299)
T PF05971_consen    4 KKSMHPRNPYKD-RYDFAALAKKYPELKKFVIINKKGRVSIDFSDPEAVRELNKALLKHDFGLDVWDIPEGRLCPPIPNR   82 (299)
T ss_dssp             ----------------------------------------S-TTSHHHHHHHHHHHHHHHH--------TTS----HHHH
T ss_pred             cCCCCCCCCCCC-CCCHHHHHHhCcchhHhhEECCCCcEEEecCCHHHHHHHHHHHHHHhcCCccccCCCCCcCCCCchh
Confidence            467999999985 789999999999999999998999999999999999999999999999998 599999999999999


Q ss_pred             HhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 010968           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI  171 (496)
Q Consensus        92 ~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~  171 (496)
                      +||||||+|+|......    ....+++||||||+.|||++|+++.++|+|+|+|||+.+++.|++|+++|++|+++|++
T Consensus        83 ~nYi~~i~DlL~~~~~~----~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l  158 (299)
T PF05971_consen   83 LNYIHWIADLLASSNPG----IPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIEL  158 (299)
T ss_dssp             HHHHHHHHHHHT--TCG----CS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEE
T ss_pred             HHHHHHHHHHhhccccc----cccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEE
Confidence            99999999999864211    11368999999999999999999999999999999999999999999999559999999


Q ss_pred             EEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCC
Q 010968          172 RKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPF  251 (496)
Q Consensus       172 v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY  251 (496)
                      +......                                                   +||.++....+.|||+||||||
T Consensus       159 ~~~~~~~---------------------------------------------------~i~~~i~~~~e~~dftmCNPPF  187 (299)
T PF05971_consen  159 RKQKNPD---------------------------------------------------NIFDGIIQPNERFDFTMCNPPF  187 (299)
T ss_dssp             EE--ST----------------------------------------------------SSTTTSTT--S-EEEEEE----
T ss_pred             EEcCCcc---------------------------------------------------ccchhhhcccceeeEEecCCcc
Confidence            9875211                                                   2566666667899999999999


Q ss_pred             ccCccccc-----------C------CCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHH
Q 010968          252 FESMEEAG-----------L------NPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLI  314 (496)
Q Consensus       252 ~~s~eea~-----------~------eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~  314 (496)
                      |++.+|+.           .      +|..+|+|+.+||+|+|||++||++||+||..+..++.|||+||||+++++.|+
T Consensus       188 y~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~GGEv~FV~rMI~ES~~~~~~v~WfTsmvgKkssL~~l~  267 (299)
T PF05971_consen  188 YSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEGGEVAFVKRMIKESLQLKDQVRWFTSMVGKKSSLKPLK  267 (299)
T ss_dssp             -SS--------------------------------TTTTHHHHTHHHHHHHHHHHHHHHGGGEEEEEEEESSGGGHHHHH
T ss_pred             ccChhhhcccccccccccccccccccCccccCCCCcceEEcCCccHHHHHHHHHHHHHhCCCcEEEeecccCcccHHHHH
Confidence            99998752           1      589999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeeEEEEEecCCCeeEEEEEEeeCC
Q 010968          315 SKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVP  346 (496)
Q Consensus       315 ~~L~~~g~~~vk~~ed~qG~t~Rw~lAWsF~~  346 (496)
                      +.|++.|+.+++++++.||+|.||+|||||.+
T Consensus       268 ~~L~~~~~~~~~~~e~~QG~t~rw~lAWsF~d  299 (299)
T PF05971_consen  268 KELKKLGATNYKVTEMCQGQTKRWILAWSFLD  299 (299)
T ss_dssp             HHHHHTT-SEEEEEEEEETTEEEEEEEEES--
T ss_pred             HHHHhcCCceEEEEEccCCceEEEEEEEeccC
Confidence            99999999999999999999999999999974

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=100.00  E-value=8e-76  Score=587.10  Aligned_cols=296  Identities=52%  Similarity=0.908  Sum_probs=264.6

Q ss_pred             CCCCCCCCCCCCCCCHHHHHhhCCCccccccccCCCCcceecCChhhHHHHHHHHHhHhcCcEEEecCCCeeCCCCCcHh
Q 010968           14 PTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSN   93 (496)
Q Consensus        14 ~~mHprN~y~~~~pDF~~La~~yP~f~~~v~~~~~G~~~IDf~d~~A~r~Lt~aLL~~ffGL~~~Vp~g~LiPrvP~R~n   93 (496)
                      ..|||||+|+++||||+.||.+||+|++||..+.+||++|||+|++|+|+||++||++||||.++||+|+|||+||+|+|
T Consensus         5 k~mhpRn~Y~dkPPDfa~LaseyPsfK~fvq~~~ngRv~~Dfkd~~AvR~Lt~tLL~~Dfgl~veiP~grLcPtVPnR~n   84 (419)
T KOG2912|consen    5 KSMHPRNRYKDKPPDFAYLASEYPSFKQFVQINLNGRVSLDFKDPEAVRALTCTLLREDFGLSVEIPLGRLCPTVPNRLN   84 (419)
T ss_pred             cccCCcccccCCCccHHHHHHhCccchhheEeccCCeEEeecCCHHHHHHHHHHHHhhccCceEecCccccCCCCccchh
Confidence            34999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEE
Q 010968           94 YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRK  173 (496)
Q Consensus        94 yi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~  173 (496)
                      |||||+|||.+..    ..++...+++|||||+.||+++++++..+|.++|+||++..+..|+.|+..|+ ++++|.+++
T Consensus        85 YihwI~DLLss~q----~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~-lss~ikvV~  159 (419)
T KOG2912|consen   85 YIHWIEDLLSSQQ----SDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNN-LSSLIKVVK  159 (419)
T ss_pred             hHHHHHHHhhccc----CCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccc-cccceeeEE
Confidence            9999999998751    11223346899999999999999999999999999999999999999999995 999999998


Q ss_pred             ccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCcc
Q 010968          174 VDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFE  253 (496)
Q Consensus       174 ~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~  253 (496)
                      .+. +.+                                     +.+.         .+..  ..+..|||||||||||+
T Consensus       160 ~~~-~kt-------------------------------------ll~d---------~~~~--~~e~~ydFcMcNPPFfe  190 (419)
T KOG2912|consen  160 VEP-QKT-------------------------------------LLMD---------ALKE--ESEIIYDFCMCNPPFFE  190 (419)
T ss_pred             ecc-hhh-------------------------------------cchh---------hhcc--CccceeeEEecCCchhh
Confidence            852 100                                     0000         0000  12456999999999999


Q ss_pred             CcccccC---------CCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCee
Q 010968          254 SMEEAGL---------NPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTI  324 (496)
Q Consensus       254 s~eea~~---------eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~  324 (496)
                      ..+|++.         .|..+|+|+..||+..|||++|+.|||.+|..++++.+|||+|+||+++++.|++.|++.|++.
T Consensus       191 ~~~Ea~~n~~~s~~rtpp~~vc~gg~~e~v~eggev~fvnRiitds~~lr~~IrwYT~MlGKKsslk~l~~kL~e~gv~k  270 (419)
T KOG2912|consen  191 NQLEAKGNNSRSPRRTPPSSVCTGGSQEFVSEGGEVSFVNRIITDSFVLRKRIRWYTCMLGKKSSLKPLISKLREQGVTK  270 (419)
T ss_pred             chhhhccccccCCCCCCcccccccchhHHHhhccHHHHHHHHHHHHHHhhhcceEEeeecccccccHHHHHHHHHcCCce
Confidence            9877642         4677899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCCCeeEEEEEEeeCCccccccCCCcccccccc
Q 010968          325 VKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKKNLS  363 (496)
Q Consensus       325 vk~~ed~qG~t~Rw~lAWsF~~~~~~~~~~~~~~~~~~~  363 (496)
                      |++++++||+|.||+|||||++.+++.+.|++.+++..|
T Consensus       271 v~itel~qGkTkRW~LaWSF~~~v~~~~~ps~~rps~~s  309 (419)
T KOG2912|consen  271 VKITELVQGKTKRWGLAWSFMPIVRKIIAPSVVRPSVKS  309 (419)
T ss_pred             EEEEEeeccccceeeEEeeecccccccCCchhcccchhh
Confidence            999999999999999999999999999999999988766

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=100.00  E-value=1.5e-73  Score=582.28  Aligned_cols=284  Identities=40%  Similarity=0.732  Sum_probs=250.1

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHhhCCCccccccccCCCCcceecCChhhHHHHHHHHHhHhcCcE-EEecCCCeeCCCCCc
Q 010968           13 RPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLN-WWIPDGQLCPTVPNR   91 (496)
Q Consensus        13 ~~~mHprN~y~~~~pDF~~La~~yP~f~~~v~~~~~G~~~IDf~d~~A~r~Lt~aLL~~ffGL~-~~Vp~g~LiPrvP~R   91 (496)
                      ++.|||||+|+ ++|||++|+++||+|++||..+..|+.+|||+|++|+++||++||++|||++ |+||+|.|||+||+|
T Consensus        13 ~~~~h~rn~~~-~~~df~~L~~~~p~l~~~v~~~~~g~~~idF~~~~Av~~LnkalL~~~ygl~~wdip~~~LcPpiP~R   91 (321)
T PRK11727         13 KPGLHPRNRHR-GRYDFAALIQSHPELKPFVILNPYGEQSIDFANPLAVKALNKALLAHFYGVAHWDIPAGYLCPPIPGR   91 (321)
T ss_pred             ccCCCCCCcCC-CCCCHHHHHHhChhHHHHhccCCCCCeeeeCCCHHHHHHHHHHHHHHhcCCCcccCCCCCcCCCCCcH
Confidence            57899999998 5899999999999999999999999999999999999999999999999998 799999999999999


Q ss_pred             HhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 010968           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI  171 (496)
Q Consensus        92 ~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~  171 (496)
                      ++|||||+|+|........ ..+...++||||||+|||+++|+.+.++|+|+|+|||+.|+++|++|++.|+++.++|++
T Consensus        92 ~~Yi~~l~dll~~~~~~~~-p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~  170 (321)
T PRK11727         92 ADYIHHLADLLAEDNGGVI-PRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRL  170 (321)
T ss_pred             HHHHHHHHHHhcccccccC-CCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEE
Confidence            9999999999975321111 123567999999999999999999999999999999999999999999999338889998


Q ss_pred             EEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCC
Q 010968          172 RKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPF  251 (496)
Q Consensus       172 v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY  251 (496)
                      +......                                                   +++.++....++||+|||||||
T Consensus       171 ~~~~~~~---------------------------------------------------~i~~~i~~~~~~fDlivcNPPf  199 (321)
T PRK11727        171 RLQKDSK---------------------------------------------------AIFKGIIHKNERFDATLCNPPF  199 (321)
T ss_pred             EEccchh---------------------------------------------------hhhhcccccCCceEEEEeCCCC
Confidence            7543210                                                   1333333335789999999999


Q ss_pred             ccCccccc-------------CCC--CcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHH
Q 010968          252 FESMEEAG-------------LNP--KTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISK  316 (496)
Q Consensus       252 ~~s~eea~-------------~eP--~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~  316 (496)
                      |++.+++.             .+|  .+.++|...||+|+|||++||.+||++|..++.++||||+|+||+++++.|++.
T Consensus       200 ~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~kk~~l~~l~~~  279 (321)
T PRK11727        200 HASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVSKKENLPPLYRA  279 (321)
T ss_pred             cCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEeeccCCHHHHHHH
Confidence            99987631             111  467889999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeeEEEEEecCCCeeEEEEEEeeCCccc
Q 010968          317 LRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPAR  349 (496)
Q Consensus       317 L~~~g~~~vk~~ed~qG~t~Rw~lAWsF~~~~~  349 (496)
                      |++.|++.++++++.||++.||+|||||.+..+
T Consensus       280 L~~~~~~~~~~~e~~qG~~~~~~vaWsf~~~~~  312 (321)
T PRK11727        280 LKKVGAVEVKTIEMAQGQKQSRFIAWTFLDDEQ  312 (321)
T ss_pred             HHHcCCceEEEEEEeCCCeeeEEEEeecCCHHH
Confidence            999999999999999999999999999998753

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=100.00  E-value=1.2e-53  Score=413.20  Aligned_cols=260  Identities=36%  Similarity=0.703  Sum_probs=233.2

Q ss_pred             CCCccccccccCCCCcceecCChhhHHHHHHHHHhHhcCcE-EEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCC
Q 010968           36 YPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLN-WWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNG  114 (496)
Q Consensus        36 yP~f~~~v~~~~~G~~~IDf~d~~A~r~Lt~aLL~~ffGL~-~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~  114 (496)
                      .|+|..|+..+++|+.+|||.||.||+.|+|+||.+||+++ |+||+|.|||+||+|++|||+|+|||.+..-   ...+
T Consensus         1 ~Pel~~f~~~~p~G~~siDFanp~AVk~LnKAlL~~fY~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g---~~~~   77 (292)
T COG3129           1 MPELILFLRLTPAGRQSIDFANPLAVKALNKALLAHFYAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSG---QIPG   77 (292)
T ss_pred             CcceeeeeeccCCCceeeccCCHHHHHHHHHHHHHHhcceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCC---CCCc
Confidence            38999999999999999999999999999999999999997 9999999999999999999999999986521   1124


Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ++.++||||+|+.|||++++.+.++|+++|+|||+.+++.|+.|+..|++++..|+++.....+                
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~----------------  141 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSD----------------  141 (292)
T ss_pred             CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcc----------------
Confidence            6789999999999999999999999999999999999999999999997799999998775321                


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCccccc---------------
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAG---------------  259 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~---------------  259 (496)
                                                         .||.+++...|.||++||||||+++.+++.               
T Consensus       142 -----------------------------------~if~giig~nE~yd~tlCNPPFh~s~~da~~gsqrk~~nl~g~l~  186 (292)
T COG3129         142 -----------------------------------AIFNGIIGKNERYDATLCNPPFHDSAADARAGSQRKRRNLGGELG  186 (292)
T ss_pred             -----------------------------------ccccccccccceeeeEecCCCcchhHHHHHhcccCCccccccccc
Confidence                                               367777666789999999999999987641               


Q ss_pred             ---CCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecCCCee
Q 010968          260 ---LNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTC  336 (496)
Q Consensus       260 ---~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t~  336 (496)
                         ..|...++|...|++|+|||.+||.+|+++|..+.+++.|||++|.|.+++..|.+.|+..|...|.+.|+-||+..
T Consensus       187 ~~~~~~~lnfggq~qelwCegGe~afi~~mv~es~afakqv~WfttLisk~snlp~l~~~l~~~ga~~v~~~emaqgqK~  266 (292)
T COG3129         187 PTNKLDALNFGGQQQELWCEGGEVAFIKKMVEESRAFAKQVFWFTTLISKGSNLPPLYRALTDVGAVKVVKKEMAQGQKQ  266 (292)
T ss_pred             ccccchhhhccCCceEEEecCcchhhHHHHHHHHHHHhhheehheeecCCcCCCHHHHHHHHHhcceeeeehhhcccccc
Confidence               02445678999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             EEEEEEeeCCccc
Q 010968          337 RWGLAWSFVPPAR  349 (496)
Q Consensus       337 Rw~lAWsF~~~~~  349 (496)
                      ...|||||.++.+
T Consensus       267 SrfIaWtf~d~eq  279 (292)
T COG3129         267 SRFIAWTFMDDEQ  279 (292)
T ss_pred             ceeEEEEeeCHHH
Confidence            6679999987753

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.6e-32  Score=271.57  Aligned_cols=194  Identities=21%  Similarity=0.271  Sum_probs=165.2

Q ss_pred             hHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcH
Q 010968           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (496)
Q Consensus        70 ~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~  149 (496)
                      ++|+|++++|.++||||| |.++..+.++...+...         .. +|||||||||||++.|+.+.+.++|+|+|||+
T Consensus        76 ~~f~gl~~~v~~~vliPr-~dTe~Lve~~l~~~~~~---------~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~  144 (280)
T COG2890          76 AEFGGLRFKVDEGVLIPR-PDTELLVEAALALLLQL---------DK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISP  144 (280)
T ss_pred             CeecceeeeeCCCceecC-CchHHHHHHHHHhhhhc---------CC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCH
Confidence            469999999999999999 78888887766333221         12 79999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010968          150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP  229 (496)
Q Consensus       150 ~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~  229 (496)
                      +|+++|++|++.|+ + .++.++.+|                                                      
T Consensus       145 ~Al~~A~~Na~~~~-l-~~~~~~~~d------------------------------------------------------  168 (280)
T COG2890         145 DALALARENAERNG-L-VRVLVVQSD------------------------------------------------------  168 (280)
T ss_pred             HHHHHHHHHHHHcC-C-ccEEEEeee------------------------------------------------------
Confidence            99999999999996 7 566666554                                                      


Q ss_pred             CccccccCCCCcEEEEEECCCCccCccc------ccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEE
Q 010968          230 PVLVGVVRDGEQFDFCICNPPFFESMEE------AGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSM  303 (496)
Q Consensus       230 ~il~~v~~~~e~FDfImcNPPY~~s~ee------a~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsm  303 (496)
                       +|.++   .++||+|||||||++....      ..+||..++.++.+       |++++++|+.++..+++++||+.++
T Consensus       169 -lf~~~---~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~d-------Gl~~~~~i~~~a~~~l~~~g~l~le  237 (280)
T COG2890         169 -LFEPL---RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGD-------GLEVYRRILGEAPDILKPGGVLILE  237 (280)
T ss_pred             -ccccc---CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCcc-------HHHHHHHHHHhhHHHcCCCcEEEEE
Confidence             23333   2489999999999998611      13689999988888       9999999999999999999999999


Q ss_pred             eCCcCcHHHHHHHHHHcC-CeeEEEEEecCCCeeEEEEEEe
Q 010968          304 VGRKSNLKFLISKLRKVG-VTIVKTTEFVQGQTCRWGLAWS  343 (496)
Q Consensus       304 vGk~s~l~~L~~~L~~~g-~~~vk~~ed~qG~t~Rw~lAWs  343 (496)
                      +| ..+.+.+.+++.+.| +..+.+.+|..|+ .|.+++|.
T Consensus       238 ~g-~~q~~~v~~~~~~~~~~~~v~~~~d~~g~-~rv~~~~~  276 (280)
T COG2890         238 IG-LTQGEAVKALFEDTGFFEIVETLKDLFGR-DRVVLAKL  276 (280)
T ss_pred             EC-CCcHHHHHHHHHhcCCceEEEEEecCCCc-eEEEEEEe
Confidence            99 899999999999999 7889999999999 58877765

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.97  E-value=1.1e-29  Score=273.79  Aligned_cols=204  Identities=19%  Similarity=0.220  Sum_probs=170.2

Q ss_pred             hHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCC-CCC------------CC--CCCCCCeEEEEcCchhHHHHHHH
Q 010968           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNI-IPT------------TS--RNGDKVKGFDIGTGANCIYPLLG  134 (496)
Q Consensus        70 ~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~-i~~------------~~--~~~~~~~vLDIGTGSG~I~ilLa  134 (496)
                      ++|||++|.|.++||||| |+|+..|+|+.+.+.... .+.            ..  ......+|||||||||||++.++
T Consensus        79 ~~F~g~~f~V~~~VLIPR-peTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la  157 (506)
T PRK01544         79 KEFYSREFIVNKHVLIPR-SDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLL  157 (506)
T ss_pred             CEEcCcEEEeCCCcccCC-CcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHH
Confidence            569999999999999999 899999999876553100 000            00  01123589999999999999999


Q ss_pred             HHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCC
Q 010968          135 ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSS  214 (496)
Q Consensus       135 ~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~  214 (496)
                      ...++++|+|+|+|+.|+++|++|++.++ +.++|+++.+|...                                    
T Consensus       158 ~~~p~~~v~avDis~~al~~A~~N~~~~~-l~~~v~~~~~D~~~------------------------------------  200 (506)
T PRK01544        158 CELPNANVIATDISLDAIEVAKSNAIKYE-VTDRIQIIHSNWFE------------------------------------  200 (506)
T ss_pred             HHCCCCeEEEEECCHHHHHHHHHHHHHcC-Cccceeeeecchhh------------------------------------
Confidence            88899999999999999999999999985 87889988876321                                    


Q ss_pred             CCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccc-------cCCCCcccCCCCCcccccCchHHHHHHHH
Q 010968          215 SFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEA-------GLNPKTSCGGTPEEMVCSGGERAFITRII  287 (496)
Q Consensus       215 ~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea-------~~eP~~al~G~~~Emv~~GGel~FI~riI  287 (496)
                                         .+  ..++||+|||||||++..+..       .+||..|+.|+.+       |+.+|++|+
T Consensus       201 -------------------~~--~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~d-------Gl~~~~~il  252 (506)
T PRK01544        201 -------------------NI--EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEED-------GLQAYFIIA  252 (506)
T ss_pred             -------------------hC--cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCcc-------HHHHHHHHH
Confidence                               11  135799999999999876532       3689999999998       999999999


Q ss_pred             HHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecCCCeeEEEEE
Q 010968          288 EDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLA  341 (496)
Q Consensus       288 ~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t~Rw~lA  341 (496)
                      +++..+++++||+.+++| .++.+.+.+++.+.|+..+.+.+|++|+ .|.+++
T Consensus       253 ~~a~~~L~~gG~l~lEig-~~q~~~v~~~~~~~g~~~~~~~~D~~g~-~R~v~~  304 (506)
T PRK01544        253 ENAKQFLKPNGKIILEIG-FKQEEAVTQIFLDHGYNIESVYKDLQGH-SRVILI  304 (506)
T ss_pred             HHHHHhccCCCEEEEEEC-CchHHHHHHHHHhcCCCceEEEecCCCC-ceEEEe
Confidence            999999999999999999 8899999999999999999999999999 687655

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.97  E-value=3e-29  Score=251.53  Aligned_cols=197  Identities=22%  Similarity=0.307  Sum_probs=167.4

Q ss_pred             hHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcH
Q 010968           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (496)
Q Consensus        70 ~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~  149 (496)
                      ++|||++|.|++++|||| |+++.+++++.+.+...        ....+|||+|||+|||++.++...++++++|+|+|+
T Consensus        78 ~~f~g~~f~v~~~vliPr-~ete~lv~~~l~~~~~~--------~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~  148 (284)
T TIGR00536        78 KEFYGLEFFVNEHVLIPR-PETEELVEKALASLISQ--------NPILHILDLGTGSGCIALALAYEFPNAEVIAVDISP  148 (284)
T ss_pred             ceEcCeEEEECCCCcCCC-CccHHHHHHHHHHhhhc--------CCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCH
Confidence            579999999999999999 88888888766544211        112589999999999999999988889999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010968          150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP  229 (496)
Q Consensus       150 ~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~  229 (496)
                      +|+++|++|++.++ +.++++++.+|...                                                   
T Consensus       149 ~al~~a~~n~~~~~-~~~~v~~~~~d~~~---------------------------------------------------  176 (284)
T TIGR00536       149 DALAVAEENAEKNQ-LEHRVEFIQSNLFE---------------------------------------------------  176 (284)
T ss_pred             HHHHHHHHHHHHcC-CCCcEEEEECchhc---------------------------------------------------
Confidence            99999999999985 77789998887431                                                   


Q ss_pred             CccccccCCCCcEEEEEECCCCccCccc------ccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEE
Q 010968          230 PVLVGVVRDGEQFDFCICNPPFFESMEE------AGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSM  303 (496)
Q Consensus       230 ~il~~v~~~~e~FDfImcNPPY~~s~ee------a~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsm  303 (496)
                          .+  ...+||+|||||||++..+.      ..++|..++.|+.+       |+.++++|+.++..+++++||+.++
T Consensus       177 ----~~--~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~d-------gl~~~~~ii~~a~~~L~~gG~l~~e  243 (284)
T TIGR00536       177 ----PL--AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDD-------GLNILRQIIELAPDYLKPNGFLVCE  243 (284)
T ss_pred             ----cC--cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCc-------HHHHHHHHHHHHHHhccCCCEEEEE
Confidence                11  12379999999999987642      13689999999888       9999999999999999999999999


Q ss_pred             eCCcCcHHHHHHHHH-HcCCeeEEEEEecCCCeeEEEEEE
Q 010968          304 VGRKSNLKFLISKLR-KVGVTIVKTTEFVQGQTCRWGLAW  342 (496)
Q Consensus       304 vGk~s~l~~L~~~L~-~~g~~~vk~~ed~qG~t~Rw~lAW  342 (496)
                      +| ..|...+.+++. +.|+..+.+.+|++|+ .|+++++
T Consensus       244 ~g-~~q~~~~~~~~~~~~~~~~~~~~~D~~g~-~R~~~~~  281 (284)
T TIGR00536       244 IG-NWQQKSLKELLRIKFTWYDVENGRDLNGK-ERVVLGF  281 (284)
T ss_pred             EC-ccHHHHHHHHHHhcCCCceeEEecCCCCC-ceEEEEE
Confidence            99 889999999998 4689899999999999 6998875

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.96  E-value=7e-29  Score=261.01  Aligned_cols=194  Identities=17%  Similarity=0.175  Sum_probs=164.6

Q ss_pred             hHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcH
Q 010968           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (496)
Q Consensus        70 ~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~  149 (496)
                      ++|||++|.|++++|||| |+++.++.++.+.+.           ...++||||||||||++.++.+.++++++|+|+|+
T Consensus       218 ~~F~G~~f~V~p~vLIPR-peTE~LVe~aL~~l~-----------~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~  285 (423)
T PRK14966        218 REFYGRRFAVNPNVLIPR-PETEHLVEAVLARLP-----------ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISP  285 (423)
T ss_pred             eeecCcEEEeCCCccCCC-ccHHHHHHHhhhccC-----------CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCH
Confidence            469999999999999999 777777766654432           12489999999999999999888899999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010968          150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP  229 (496)
Q Consensus       150 ~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~  229 (496)
                      +|++.|++|++.++ .  +|+++.+|..+.                                                  
T Consensus       286 ~ALe~AreNa~~~g-~--rV~fi~gDl~e~--------------------------------------------------  312 (423)
T PRK14966        286 PALETARKNAADLG-A--RVEFAHGSWFDT--------------------------------------------------  312 (423)
T ss_pred             HHHHHHHHHHHHcC-C--cEEEEEcchhcc--------------------------------------------------
Confidence            99999999999874 3  789988874310                                                  


Q ss_pred             CccccccCCCCcEEEEEECCCCccCcccc------cCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEE
Q 010968          230 PVLVGVVRDGEQFDFCICNPPFFESMEEA------GLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSM  303 (496)
Q Consensus       230 ~il~~v~~~~e~FDfImcNPPY~~s~eea------~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsm  303 (496)
                       .+    ...++||+|+|||||++..+..      .+||..|+.|+++       |++|+++|++++..+++++||+.++
T Consensus       313 -~l----~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~d-------GL~~yr~Ii~~a~~~LkpgG~lilE  380 (423)
T PRK14966        313 -DM----PSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSD-------GLSCIRTLAQGAPDRLAEGGFLLLE  380 (423)
T ss_pred             -cc----ccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCc-------hHHHHHHHHHHHHHhcCCCcEEEEE
Confidence             00    0124799999999999875432      3689999999998       9999999999999999999999999


Q ss_pred             eCCcCcHHHHHHHHHHcCCeeEEEEEecCCCeeEEEEEE
Q 010968          304 VGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAW  342 (496)
Q Consensus       304 vGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t~Rw~lAW  342 (496)
                      +| .+|.+.+.+++++.|+..+.+.+|++|+ .|.++++
T Consensus       381 iG-~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~-dR~v~~~  417 (423)
T PRK14966        381 HG-FDQGAAVRGVLAENGFSGVETLPDLAGL-DRVTLGK  417 (423)
T ss_pred             EC-ccHHHHHHHHHHHCCCcEEEEEEcCCCC-cEEEEEE
Confidence            99 7999999999999999999999999999 6888875

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.94  E-value=2.2e-26  Score=228.59  Aligned_cols=204  Identities=17%  Similarity=0.180  Sum_probs=161.1

Q ss_pred             HhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHH
Q 010968           71 HDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV  150 (496)
Q Consensus        71 ~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~  150 (496)
                      +|.++.+.+-+|||||| |+|+++++||.|.+....      -.+...+||+|||||||++.+++.++..+|+|+|+|+.
T Consensus       111 ~F~~l~l~~~pgVlIPR-pETEE~V~~Vid~~~~~~------~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~  183 (328)
T KOG2904|consen  111 PFGDLDLVCKPGVLIPR-PETEEWVEAVIDALNNSE------HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKA  183 (328)
T ss_pred             ccCCceEEecCCeeecC-ccHHHHHHHHHHHHhhhh------hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHH
Confidence            57889999999999999 999999999999987531      11334799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010968          151 ALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPP  230 (496)
Q Consensus       151 AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~  230 (496)
                      |+.+|.+|++++. +.++|.+++-+....                                                   
T Consensus       184 Ai~La~eN~qr~~-l~g~i~v~~~~me~d---------------------------------------------------  211 (328)
T KOG2904|consen  184 AIKLAKENAQRLK-LSGRIEVIHNIMESD---------------------------------------------------  211 (328)
T ss_pred             HHHHHHHHHHHHh-hcCceEEEecccccc---------------------------------------------------
Confidence            9999999999995 999999986642110                                                   


Q ss_pred             ccccccCCCCcEEEEEECCCCccCcccc-------cCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEE
Q 010968          231 VLVGVVRDGEQFDFCICNPPFFESMEEA-------GLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSM  303 (496)
Q Consensus       231 il~~v~~~~e~FDfImcNPPY~~s~eea-------~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsm  303 (496)
                      .+.......+++|+++|||||+.+.+..       .+||+.|+.|+.+       |..++..+..-+.+.+.++|.+.++
T Consensus       212 ~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~e-------G~~~~~~~~~~a~R~Lq~gg~~~le  284 (328)
T KOG2904|consen  212 ASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLE-------GYDNLVHYWLLATRMLQPGGFEQLE  284 (328)
T ss_pred             cccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccc-------hhHHHHHHHHhhHhhcccCCeEEEE
Confidence            0000001247899999999999987743       2799999999998       9999999999999999999999888


Q ss_pred             eCCcCcHHHHHHH----HHHcCCeeEEEEEecCCCeeEEEEE
Q 010968          304 VGRKSNLKFLISK----LRKVGVTIVKTTEFVQGQTCRWGLA  341 (496)
Q Consensus       304 vGk~s~l~~L~~~----L~~~g~~~vk~~ed~qG~t~Rw~lA  341 (496)
                      ++...+-..+++.    +.+--...+++..|..|+ .|+++.
T Consensus       285 ~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~Df~~~-~Rfv~i  325 (328)
T KOG2904|consen  285 LVERKEHSYLVRIWMISLKDDSNGKAAVVSDFAGR-PRFVII  325 (328)
T ss_pred             ecccccCcHHHHHHHHhchhhccchhheeecccCC-cceEEE
Confidence            8733333333332    223334567888999998 577654

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.94  E-value=1.5e-25  Score=220.55  Aligned_cols=195  Identities=23%  Similarity=0.339  Sum_probs=165.3

Q ss_pred             hHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcH
Q 010968           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (496)
Q Consensus        70 ~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~  149 (496)
                      .+|||+++.+.+++|+|| |+++.++.|+.+.+..         ....+|||+|||+|+++..++...+.++++|+|+++
T Consensus        73 ~~f~~~~~~~~~~~lipr-~~te~l~~~~~~~~~~---------~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~  142 (275)
T PRK09328         73 AEFWGLDFKVSPGVLIPR-PETEELVEWALEALLL---------KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISP  142 (275)
T ss_pred             ceEcCcEEEECCCceeCC-CCcHHHHHHHHHhccc---------cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCH
Confidence            569999999999999999 8888888888754432         134689999999999999999888889999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010968          150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP  229 (496)
Q Consensus       150 ~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~  229 (496)
                      .+++.|++|++ +. ...++.++.+|...                                                   
T Consensus       143 ~~l~~a~~n~~-~~-~~~~i~~~~~d~~~---------------------------------------------------  169 (275)
T PRK09328        143 EALAVARRNAK-HG-LGARVEFLQGDWFE---------------------------------------------------  169 (275)
T ss_pred             HHHHHHHHHHH-hC-CCCcEEEEEccccC---------------------------------------------------
Confidence            99999999998 32 45678888876421                                                   


Q ss_pred             CccccccCCCCcEEEEEECCCCccCcccc-------cCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEE
Q 010968          230 PVLVGVVRDGEQFDFCICNPPFFESMEEA-------GLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS  302 (496)
Q Consensus       230 ~il~~v~~~~e~FDfImcNPPY~~s~eea-------~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwfts  302 (496)
                          .+  ..++||+|+|||||++..+..       .++|..++.++.+       ++.++.++++++..+++++|++.+
T Consensus       170 ----~~--~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~-------g~~~~~~~~~~~~~~Lk~gG~l~~  236 (275)
T PRK09328        170 ----PL--PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGED-------GLDFYRRIIEQAPRYLKPGGWLLL  236 (275)
T ss_pred             ----cC--CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCC-------HHHHHHHHHHHHHHhcccCCEEEE
Confidence                11  135799999999999865422       3689999998888       999999999999999999999999


Q ss_pred             EeCCcCcHHHHHHHHHHcCCeeEEEEEecCCCeeEEEEEE
Q 010968          303 MVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAW  342 (496)
Q Consensus       303 mvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t~Rw~lAW  342 (496)
                      ++| ..+.+.+.+++.+.|+..+.+.+|+.|+ .|+++++
T Consensus       237 e~g-~~~~~~~~~~l~~~gf~~v~~~~d~~~~-~r~~~~~  274 (275)
T PRK09328        237 EIG-YDQGEAVRALLAAAGFADVETRKDLAGR-DRVVLGR  274 (275)
T ss_pred             EEC-chHHHHHHHHHHhCCCceeEEecCCCCC-ceEEEEE
Confidence            999 7788999999999999999999999998 6888875

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.93  E-value=2.5e-25  Score=223.91  Aligned_cols=178  Identities=19%  Similarity=0.250  Sum_probs=147.2

Q ss_pred             hHhcCcEEEecCCCeeCCCCCcHhHHHHHHH-HhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCc
Q 010968           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIED-LLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT  148 (496)
Q Consensus        70 ~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~d-lL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs  148 (496)
                      ++|+|++|.|++++|||| |.++..+.+... .+..         ....+|||+|||+|+|++.++...++++++|+|+|
T Consensus        85 ~~f~g~~f~v~~~vlipr-~~te~lv~~~l~~~~~~---------~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis  154 (284)
T TIGR03533        85 AWFAGLEFYVDERVLIPR-SPIAELIEDGFAPWLEP---------EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDIS  154 (284)
T ss_pred             CeecCcEEEECCCCccCC-CchHHHHHHHHHHHhcc---------CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECC
Confidence            468999999999999999 777777776543 2211         12358999999999999999988889999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010968          149 DVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHG  228 (496)
Q Consensus       149 ~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~  228 (496)
                      +.|++.|++|++.++ +.++|+++.+|...                                                  
T Consensus       155 ~~al~~A~~n~~~~~-~~~~i~~~~~D~~~--------------------------------------------------  183 (284)
T TIGR03533       155 PDALAVAEINIERHG-LEDRVTLIQSDLFA--------------------------------------------------  183 (284)
T ss_pred             HHHHHHHHHHHHHcC-CCCcEEEEECchhh--------------------------------------------------
Confidence            999999999999985 77789998887421                                                  


Q ss_pred             CCccccccCCCCcEEEEEECCCCccCcccc------cCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEE
Q 010968          229 PPVLVGVVRDGEQFDFCICNPPFFESMEEA------GLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS  302 (496)
Q Consensus       229 ~~il~~v~~~~e~FDfImcNPPY~~s~eea------~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwfts  302 (496)
                           .+  +.++||+|+|||||++..+..      .++|..++.|+.+       ++.++++++.++..+++++|++.+
T Consensus       184 -----~~--~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~d-------Gl~~~~~il~~a~~~L~~gG~l~~  249 (284)
T TIGR03533       184 -----AL--PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGED-------GLDLVRRILAEAADHLNENGVLVV  249 (284)
T ss_pred             -----cc--CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCc-------HHHHHHHHHHHHHHhcCCCCEEEE
Confidence                 11  134799999999999865421      3689999998888       999999999999999999999999


Q ss_pred             EeCCcCcHHHHHHHHHHcCCee
Q 010968          303 MVGRKSNLKFLISKLRKVGVTI  324 (496)
Q Consensus       303 mvGk~s~l~~L~~~L~~~g~~~  324 (496)
                      ++| .++ +.+.+.+.+.|+..
T Consensus       250 e~g-~~~-~~v~~~~~~~~~~~  269 (284)
T TIGR03533       250 EVG-NSM-EALEEAYPDVPFTW  269 (284)
T ss_pred             EEC-cCH-HHHHHHHHhCCCce
Confidence            999 455 78999999888753

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.93  E-value=1.7e-24  Score=220.43  Aligned_cols=178  Identities=18%  Similarity=0.245  Sum_probs=144.7

Q ss_pred             hHhcCcEEEecCCCeeCCCCCcHhHHHHHHH-HhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCc
Q 010968           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIED-LLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT  148 (496)
Q Consensus        70 ~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~d-lL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs  148 (496)
                      ++|||++|.|++++|||| |.++..+.++.. .+..         ....+|||+|||+|++++.++...++++|+|+|+|
T Consensus        97 ~~F~g~~f~v~~~vlipr-~~te~lv~~~l~~~~~~---------~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis  166 (307)
T PRK11805         97 AWFCGLEFYVDERVLVPR-SPIAELIEDGFAPWLED---------PPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDIS  166 (307)
T ss_pred             ceEcCcEEEECCCCcCCC-CchHHHHHHHHHHHhcc---------CCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCC
Confidence            569999999999999999 677777766543 2221         11258999999999999999988889999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010968          149 DVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHG  228 (496)
Q Consensus       149 ~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~  228 (496)
                      +.|++.|++|++.++ +.++|+++.+|...                                                  
T Consensus       167 ~~al~~A~~n~~~~~-l~~~i~~~~~D~~~--------------------------------------------------  195 (307)
T PRK11805        167 PDALAVAEINIERHG-LEDRVTLIESDLFA--------------------------------------------------  195 (307)
T ss_pred             HHHHHHHHHHHHHhC-CCCcEEEEECchhh--------------------------------------------------
Confidence            999999999999985 77789999887421                                                  


Q ss_pred             CCccccccCCCCcEEEEEECCCCccCccc------ccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEE
Q 010968          229 PPVLVGVVRDGEQFDFCICNPPFFESMEE------AGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS  302 (496)
Q Consensus       229 ~~il~~v~~~~e~FDfImcNPPY~~s~ee------a~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwfts  302 (496)
                           .+  +.++||+|||||||+...+.      ..++|..++.|+.+       |+.+++++++++..+++++|++.+
T Consensus       196 -----~l--~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~d-------Gl~~~~~i~~~a~~~L~pgG~l~~  261 (307)
T PRK11805        196 -----AL--PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDD-------GLDLVRRILAEAPDYLTEDGVLVV  261 (307)
T ss_pred             -----hC--CCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCc-------hHHHHHHHHHHHHHhcCCCCEEEE
Confidence                 11  12479999999999986542      13689999999888       999999999999999999999999


Q ss_pred             EeCCcCcHHHHHHHHHHcCCee
Q 010968          303 MVGRKSNLKFLISKLRKVGVTI  324 (496)
Q Consensus       303 mvGk~s~l~~L~~~L~~~g~~~  324 (496)
                      ++| .++ ..+.+.+.+.++..
T Consensus       262 E~g-~~~-~~~~~~~~~~~~~~  281 (307)
T PRK11805        262 EVG-NSR-VHLEEAYPDVPFTW  281 (307)
T ss_pred             EEC-cCH-HHHHHHHhhCCCEE
Confidence            999 444 45888888777643

>PLN02672 methionine S-methyltransferase

Probab=99.93  E-value=5.7e-25  Score=252.52  Aligned_cols=185  Identities=14%  Similarity=0.090  Sum_probs=147.1

Q ss_pred             hHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcH
Q 010968           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (496)
Q Consensus        70 ~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~  149 (496)
                      ++|||+++.|.|+||||| |+++.+++++.. .     |..  ..+..+|||||||||||++.|+.+.+..+|+|+|||+
T Consensus        82 ~~F~~l~~~V~p~VLIPR-peTE~lve~L~~-~-----~~~--~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~  152 (1082)
T PLN02672         82 RNRKKLTMMEIPSIFIPE-DWSFTFYEGLNR-H-----PDS--IFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINP  152 (1082)
T ss_pred             EEecCCceeeCCCcccCc-hhHHHHHHHHHh-c-----ccc--cCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCH
Confidence            479999999999999999 888888877432 1     110  0123489999999999999999988889999999999


Q ss_pred             HHHHHHHHHHHHCCCC---------------CCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCC
Q 010968          150 VALEWAEKNVKSNPHI---------------SELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSS  214 (496)
Q Consensus       150 ~AL~~A~~N~~~N~~L---------------~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~  214 (496)
                      +|+++|++|++.|+ +               .++|+++.+|..+                                    
T Consensus       153 ~Al~~A~~Na~~n~-l~~~~~~~~~~~~~~l~~rV~f~~sDl~~------------------------------------  195 (1082)
T PLN02672        153 RAVKVAWINLYLNA-LDDDGLPVYDGEGKTLLDRVEFYESDLLG------------------------------------  195 (1082)
T ss_pred             HHHHHHHHHHHHcC-cccccccccccccccccccEEEEECchhh------------------------------------
Confidence            99999999999873 3               2578888877431                                    


Q ss_pred             CCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccc-------cCC---------CCcccCC---CCCcccc
Q 010968          215 SFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEA-------GLN---------PKTSCGG---TPEEMVC  275 (496)
Q Consensus       215 ~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea-------~~e---------P~~al~G---~~~Emv~  275 (496)
                                         .+.....+||+|||||||++..+..       .+|         |..|+.|   +.+    
T Consensus       196 -------------------~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~d----  252 (1082)
T PLN02672        196 -------------------YCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQF----  252 (1082)
T ss_pred             -------------------hccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCc----
Confidence                               1100123699999999999876532       133         4678866   477    


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHH-HHHHHcCCeeEEE
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLI-SKLRKVGVTIVKT  327 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~-~~L~~~g~~~vk~  327 (496)
                         |+.||++|+.++..+++++||+.+++| ..|.+.+. +++++.|+..+.+
T Consensus       253 ---GL~~yr~i~~~a~~~L~pgG~l~lEiG-~~q~~~v~~~l~~~~gf~~~~~  301 (1082)
T PLN02672        253 ---GLGLIARAVEEGISVIKPMGIMIFNMG-GRPGQAVCERLFERRGFRITKL  301 (1082)
T ss_pred             ---HHHHHHHHHHHHHHhccCCCEEEEEEC-ccHHHHHHHHHHHHCCCCeeEE
Confidence               999999999999999999999999999 99999999 6999999765443

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.92  E-value=8e-24  Score=209.61  Aligned_cols=186  Identities=14%  Similarity=0.178  Sum_probs=148.4

Q ss_pred             hHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcH
Q 010968           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (496)
Q Consensus        70 ~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~  149 (496)
                      ++|+|++|.+++++++|| |.++.++.++.+.+...        ....++||+|||+|++++.++...++.+++|+|+|+
T Consensus        50 ~~f~g~~~~v~~~vf~pr-~~Te~Lv~~~l~~~~~~--------~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~  120 (251)
T TIGR03704        50 AEFCGLRIAVDPGVFVPR-RRTEFLVDEAAALARPR--------SGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDP  120 (251)
T ss_pred             CeEcCeEEEECCCCcCCC-ccHHHHHHHHHHhhccc--------CCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCH
Confidence            678999999999999999 67777777776654321        123489999999999999999888889999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010968          150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP  229 (496)
Q Consensus       150 ~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~  229 (496)
                      .|++.|++|++.|+     ++++.+|..+                                                   
T Consensus       121 ~al~~A~~N~~~~~-----~~~~~~D~~~---------------------------------------------------  144 (251)
T TIGR03704       121 AAVRCARRNLADAG-----GTVHEGDLYD---------------------------------------------------  144 (251)
T ss_pred             HHHHHHHHHHHHcC-----CEEEEeechh---------------------------------------------------
Confidence            99999999999874     3567666431                                                   


Q ss_pred             CccccccCCCCcEEEEEECCCCccCccc-------ccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEE
Q 010968          230 PVLVGVVRDGEQFDFCICNPPFFESMEE-------AGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS  302 (496)
Q Consensus       230 ~il~~v~~~~e~FDfImcNPPY~~s~ee-------a~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwfts  302 (496)
                       .+...  ..++||+|+|||||++..+.       ..++|..++.|+.+       ++.++++|++.+..+++++||+.+
T Consensus       145 -~l~~~--~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~d-------gl~~~~~i~~~a~~~L~~gG~l~l  214 (251)
T TIGR03704       145 -ALPTA--LRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGAD-------GLDVLRRVAAGAPDWLAPGGHLLV  214 (251)
T ss_pred             -hcchh--cCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCc-------HHHHHHHHHHHHHHhcCCCCEEEE
Confidence             00000  02469999999999976432       13688899998888       999999999999999999999998


Q ss_pred             EeCCcCcHHHHHHHHHHcCCe-eEEEEEec
Q 010968          303 MVGRKSNLKFLISKLRKVGVT-IVKTTEFV  331 (496)
Q Consensus       303 mvGk~s~l~~L~~~L~~~g~~-~vk~~ed~  331 (496)
                      +++ .++...+...|++.|+. .+...+|+
T Consensus       215 ~~~-~~~~~~v~~~l~~~g~~~~~~~~~~~  243 (251)
T TIGR03704       215 ETS-ERQAPLAVEAFARAGLIARVASSEEL  243 (251)
T ss_pred             EEC-cchHHHHHHHHHHCCCCceeeEcccc
Confidence            888 78999999999999874 34444444

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.91  E-value=3e-23  Score=200.75  Aligned_cols=192  Identities=22%  Similarity=0.292  Sum_probs=160.9

Q ss_pred             hHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcH
Q 010968           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (496)
Q Consensus        70 ~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~  149 (496)
                      .+|||..+.+++++++|+ |.+..++.++.+.+..          ...+|||+|||+|+++..++...++++++|+|+++
T Consensus        53 ~~~~~~~~~~~~~~~~p~-~~~~~l~~~~l~~~~~----------~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~  121 (251)
T TIGR03534        53 REFYGLDFKVSPGVLIPR-PDTEELVEAALERLKK----------GPLRVLDLGTGSGAIALALAKERPDARVTAVDISP  121 (251)
T ss_pred             ceEeceEEEECCCcccCC-CChHHHHHHHHHhccc----------CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCH
Confidence            568999999999999999 7788888887766532          23589999999999999999888889999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010968          150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP  229 (496)
Q Consensus       150 ~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~  229 (496)
                      .+++.|++|++.++ +. +++++.+|...                                                   
T Consensus       122 ~~~~~a~~~~~~~~-~~-~~~~~~~d~~~---------------------------------------------------  148 (251)
T TIGR03534       122 EALAVARKNAARLG-LD-NVTFLQSDWFE---------------------------------------------------  148 (251)
T ss_pred             HHHHHHHHHHHHcC-CC-eEEEEECchhc---------------------------------------------------
Confidence            99999999999885 64 68888776321                                                   


Q ss_pred             CccccccCCCCcEEEEEECCCCccCcccc-------cCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEE
Q 010968          230 PVLVGVVRDGEQFDFCICNPPFFESMEEA-------GLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS  302 (496)
Q Consensus       230 ~il~~v~~~~e~FDfImcNPPY~~s~eea-------~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwfts  302 (496)
                          ..  ..++||+|+|||||+...+..       .++|..++.++.+       ++.++..+++.+..+++++|++.+
T Consensus       149 ----~~--~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~-------~~~~~~~~i~~~~~~L~~gG~~~~  215 (251)
T TIGR03534       149 ----PL--PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGED-------GLDFYRRIIAQAPRLLKPGGWLLL  215 (251)
T ss_pred             ----cC--cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCc-------HHHHHHHHHHHHHHhcccCCEEEE
Confidence                00  135799999999999754321       2478888888777       899999999999999999999999


Q ss_pred             EeCCcCcHHHHHHHHHHcCCeeEEEEEecCCCeeEEEE
Q 010968          303 MVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGL  340 (496)
Q Consensus       303 mvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t~Rw~l  340 (496)
                      +++ ..+.+.+.+.|++.|+..+.+.+|..|+ .|+++
T Consensus       216 ~~~-~~~~~~~~~~l~~~gf~~v~~~~d~~~~-~r~~~  251 (251)
T TIGR03534       216 EIG-YDQGEAVRALFEAAGFADVETRKDLAGK-DRVVL  251 (251)
T ss_pred             EEC-ccHHHHHHHHHHhCCCCceEEEeCCCCC-cCeeC
Confidence            998 7889999999999999999999999888 57753

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.85  E-value=1.1e-20  Score=187.39  Aligned_cols=175  Identities=25%  Similarity=0.306  Sum_probs=134.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||||||+|+++++|+.+.++++++||||++++.+.|++|++.|+ +++||+++++|..+.                
T Consensus        45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~-l~~ri~v~~~Di~~~----------------  107 (248)
T COG4123          45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP-LEERIQVIEADIKEF----------------  107 (248)
T ss_pred             CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc-chhceeEehhhHHHh----------------
Confidence            579999999999999999999888999999999999999999999995 999999999986531                


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                          ....  ...+||+||||||||.....  .+|.....-+.+|..+
T Consensus       108 ------------------------------------~~~~--~~~~fD~Ii~NPPyf~~~~~--~~~~~~~~~Ar~e~~~  147 (248)
T COG4123         108 ------------------------------------LKAL--VFASFDLIICNPPYFKQGSR--LNENPLRAIARHEITL  147 (248)
T ss_pred             ------------------------------------hhcc--cccccCEEEeCCCCCCCccc--cCcChhhhhhhhhhcC
Confidence                                                1111  12479999999999998765  2233333334554444


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecCCCe----eEEEEEEeeCCccccc
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQT----CRWGLAWSFVPPARKI  351 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t----~Rw~lAWsF~~~~~~~  351 (496)
                      .      ...+++-+..+++++|.+ +||.+..++.++++.|++.++. .+.+.|++.+.    .|-++.-.......-.
T Consensus       148 ~------le~~i~~a~~~lk~~G~l-~~V~r~erl~ei~~~l~~~~~~-~k~i~~V~p~~~k~A~~vLv~~~k~~~~~l~  219 (248)
T COG4123         148 D------LEDLIRAAAKLLKPGGRL-AFVHRPERLAEIIELLKSYNLE-PKRIQFVYPKIGKAANRVLVEAIKGGKSGLK  219 (248)
T ss_pred             C------HHHHHHHHHHHccCCCEE-EEEecHHHHHHHHHHHHhcCCC-ceEEEEecCCCCCcceEEEEEEecCCCCCce
Confidence            3      667888888899999886 6888899999999999999985 45566776652    6666666666554455


Q ss_pred             cCCC
Q 010968          352 ISPH  355 (496)
Q Consensus       352 ~~~~  355 (496)
                      +.|+
T Consensus       220 ~~pp  223 (248)
T COG4123         220 VLPP  223 (248)
T ss_pred             ecCC
Confidence            5555

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.80  E-value=2.4e-18  Score=160.42  Aligned_cols=161  Identities=20%  Similarity=0.265  Sum_probs=114.1

Q ss_pred             cEEEecCCCeeCCCCCcHhHH-HHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHH
Q 010968           75 LNWWIPDGQLCPTVPNRSNYI-HWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALE  153 (496)
Q Consensus        75 L~~~Vp~g~LiPrvP~R~nyi-~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~  153 (496)
                      ++|..++|+.-|+   +.++- ..+.+.+...         ...++||||||+|+|++.++.+.+.++++++|+|+.|++
T Consensus         2 ~~~~~~~gvFs~~---~~d~~t~lL~~~l~~~---------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~   69 (170)
T PF05175_consen    2 LEFITHPGVFSPP---RLDAGTRLLLDNLPKH---------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALE   69 (170)
T ss_dssp             EEEEEETTSTTTT---SHHHHHHHHHHHHHHH---------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHH
T ss_pred             EEEEECCCeeCCC---CCCHHHHHHHHHHhhc---------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHH
Confidence            5788999999765   22211 1223333221         245899999999999999999889889999999999999


Q ss_pred             HHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 010968          154 WAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLV  233 (496)
Q Consensus       154 ~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~  233 (496)
                      .|++|++.|+ +++ ++++..|...                                                       
T Consensus        70 ~a~~n~~~n~-~~~-v~~~~~d~~~-------------------------------------------------------   92 (170)
T PF05175_consen   70 LAKRNAERNG-LEN-VEVVQSDLFE-------------------------------------------------------   92 (170)
T ss_dssp             HHHHHHHHTT-CTT-EEEEESSTTT-------------------------------------------------------
T ss_pred             HHHHHHHhcC-ccc-cccccccccc-------------------------------------------------------
Confidence            9999999995 776 9998877431                                                       


Q ss_pred             cccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHH
Q 010968          234 GVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFL  313 (496)
Q Consensus       234 ~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L  313 (496)
                      .+  ..++||+|+|||||...              ...       +..+++++++++..+++++|++...+.+....+.+
T Consensus        93 ~~--~~~~fD~Iv~NPP~~~~--------------~~~-------~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~  149 (170)
T PF05175_consen   93 AL--PDGKFDLIVSNPPFHAG--------------GDD-------GLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERL  149 (170)
T ss_dssp             TC--CTTCEEEEEE---SBTT--------------SHC-------HHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHH
T ss_pred             cc--cccceeEEEEccchhcc--------------ccc-------chhhHHHHHHHHHHhccCCCEEEEEeecCCChHHH
Confidence            11  14689999999996532              222       67899999999999999999987777666666665


Q ss_pred             HHHHHHcCCeeEEEEEec
Q 010968          314 ISKLRKVGVTIVKTTEFV  331 (496)
Q Consensus       314 ~~~L~~~g~~~vk~~ed~  331 (496)
                      ++.+    +..+++.+..
T Consensus       150 l~~~----f~~~~~~~~~  163 (170)
T PF05175_consen  150 LKEL----FGDVEVVAKN  163 (170)
T ss_dssp             HHHH----HS--EEEEEE
T ss_pred             HHHh----cCCEEEEEEC
Confidence            3322    2345555543

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK14967 putative methyltransferase; Provisional

Probab=99.71  E-value=7.4e-16  Score=149.21  Aligned_cols=172  Identities=18%  Similarity=0.236  Sum_probs=126.3

Q ss_pred             cCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHH
Q 010968           73 HGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL  152 (496)
Q Consensus        73 fGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL  152 (496)
                      =|+.+.+++++..|. +.+.....++..+ .   +      ....+|||+|||+|.++..++.. ...+++|+|+|+.++
T Consensus         5 ~~~~~~~~~g~~~p~-~ds~~l~~~l~~~-~---~------~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l   72 (223)
T PRK14967          5 PPDALLRAPGVYRPQ-EDTQLLADALAAE-G---L------GPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAV   72 (223)
T ss_pred             CCceeecCCCCcCCC-CcHHHHHHHHHhc-c---c------CCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHH
Confidence            367899999999998 4444333333321 1   1      12358999999999998877654 335999999999999


Q ss_pred             HHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 010968          153 EWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVL  232 (496)
Q Consensus       153 ~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il  232 (496)
                      +.|++|++.++ +  +++++.+|...                                                      
T Consensus        73 ~~a~~n~~~~~-~--~~~~~~~d~~~------------------------------------------------------   95 (223)
T PRK14967         73 RSARLNALLAG-V--DVDVRRGDWAR------------------------------------------------------   95 (223)
T ss_pred             HHHHHHHHHhC-C--eeEEEECchhh------------------------------------------------------
Confidence            99999999875 4  47777665321                                                      


Q ss_pred             ccccCCCCcEEEEEECCCCccCcccc--cCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcH
Q 010968          233 VGVVRDGEQFDFCICNPPFFESMEEA--GLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNL  310 (496)
Q Consensus       233 ~~v~~~~e~FDfImcNPPY~~s~eea--~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l  310 (496)
                       .+  ..++||+|+|||||+...+..  ...|..++.++.+       +..++.++++++..+++++|.+.+......+.
T Consensus        96 -~~--~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~  165 (223)
T PRK14967         96 -AV--EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPD-------GRAVLDRLCDAAPALLAPGGSLLLVQSELSGV  165 (223)
T ss_pred             -hc--cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCc-------HHHHHHHHHHHHHHhcCCCcEEEEEEecccCH
Confidence             01  135799999999999765432  2345566666665       67889999999999999999887666655678


Q ss_pred             HHHHHHHHHcCCe
Q 010968          311 KFLISKLRKVGVT  323 (496)
Q Consensus       311 ~~L~~~L~~~g~~  323 (496)
                      ..+++.+++.|+.
T Consensus       166 ~~~~~~l~~~g~~  178 (223)
T PRK14967        166 ERTLTRLSEAGLD  178 (223)
T ss_pred             HHHHHHHHHCCCC
Confidence            8999999998874

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.64  E-value=1.1e-14  Score=136.07  Aligned_cols=138  Identities=17%  Similarity=0.223  Sum_probs=103.9

Q ss_pred             CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccccc
Q 010968          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDES  196 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~  196 (496)
                      .++||+|||+|.++..++...+  +++|+|+|+++++.|++|++.++ +  .++++.+|...                  
T Consensus        21 ~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~-~--~~~~~~~d~~~------------------   77 (179)
T TIGR00537        21 DDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNN-V--GLDVVMTDLFK------------------   77 (179)
T ss_pred             CeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC-C--ceEEEEccccc------------------
Confidence            5799999999999888776543  89999999999999999999885 4  47777665321                  


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCC--CCcccCCCCCccc
Q 010968          197 NMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLN--PKTSCGGTPEEMV  274 (496)
Q Consensus       197 ~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~e--P~~al~G~~~Emv  274 (496)
                                                           .   ..++||+|+|||||++........  ...++.++.+   
T Consensus        78 -------------------------------------~---~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~---  114 (179)
T TIGR00537        78 -------------------------------------G---VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKD---  114 (179)
T ss_pred             -------------------------------------c---cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCc---
Confidence                                                 0   024799999999998764432111  1223333333   


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCee
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTI  324 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~  324 (496)
                          +...+.+++++...+++++|++.+......+...+.+.|++.|+..
T Consensus       115 ----~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~  160 (179)
T TIGR00537       115 ----GRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRY  160 (179)
T ss_pred             ----hHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeE
Confidence                4566889999999999999988777765667999999999999853

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK14968 putative methyltransferase; Provisional

Probab=99.60  E-value=6.3e-14  Score=129.61  Aligned_cols=146  Identities=22%  Similarity=0.324  Sum_probs=107.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCc-EEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL-IEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~r-I~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..++||+|||+|.++..++..  +.+++|+|+|+++++.|++|+..++ +.++ +.++..|..+                
T Consensus        24 ~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~~d~~~----------------   84 (188)
T PRK14968         24 GDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNN-IRNNGVEVIRSDLFE----------------   84 (188)
T ss_pred             CCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcC-CCCcceEEEeccccc----------------
Confidence            358999999999998888765  7899999999999999999999885 6544 7777665321                


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCC--CcccCCCCCc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNP--KTSCGGTPEE  272 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP--~~al~G~~~E  272 (496)
                                                             .+  ....||+|++||||+........++  ..++.++.. 
T Consensus        85 ---------------------------------------~~--~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~-  122 (188)
T PRK14968         85 ---------------------------------------PF--RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKD-  122 (188)
T ss_pred             ---------------------------------------cc--cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcC-
Confidence                                                   11  1237999999999987542211111  112222222 


Q ss_pred             ccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEE
Q 010968          273 MVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTT  328 (496)
Q Consensus       273 mv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~  328 (496)
                            +...+..+++++..+++++|++...++-....+.+.+.+.+.|+..+.+.
T Consensus       123 ------~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~  172 (188)
T PRK14968        123 ------GREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVA  172 (188)
T ss_pred             ------hHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeee
Confidence                  46678889999999999999988888766678899999999998655443

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.60  E-value=1.8e-14  Score=146.24  Aligned_cols=127  Identities=21%  Similarity=0.207  Sum_probs=94.0

Q ss_pred             CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccccc
Q 010968          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDES  196 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~  196 (496)
                      .+|||+|||.|.|++.|+...|..+++.+|+|..|++.|++|++.|+ ++.. +++.+|.                    
T Consensus       160 ~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~-~~~~-~v~~s~~--------------------  217 (300)
T COG2813         160 GKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG-VENT-EVWASNL--------------------  217 (300)
T ss_pred             CcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC-CCcc-EEEEecc--------------------
Confidence            48999999999999999999999999999999999999999999995 6654 5555543                    


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccccc
Q 010968          197 NMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCS  276 (496)
Q Consensus       197 ~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~  276 (496)
                                                         ++++   .++||+|+|||||....+.                   
T Consensus       218 -----------------------------------~~~v---~~kfd~IisNPPfh~G~~v-------------------  240 (300)
T COG2813         218 -----------------------------------YEPV---EGKFDLIISNPPFHAGKAV-------------------  240 (300)
T ss_pred             -----------------------------------cccc---cccccEEEeCCCccCCcch-------------------
Confidence                                               2233   2489999999999864221                   


Q ss_pred             CchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEE
Q 010968          277 GGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTT  328 (496)
Q Consensus       277 GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~  328 (496)
                        ......+||.++..+|+.+|-+. +|..  .......+|++. |.++.++
T Consensus       241 --~~~~~~~~i~~A~~~L~~gGeL~-iVan--~~l~y~~~L~~~-Fg~v~~l  286 (300)
T COG2813         241 --VHSLAQEIIAAAARHLKPGGELW-IVAN--RHLPYEKKLKEL-FGNVEVL  286 (300)
T ss_pred             --hHHHHHHHHHHHHHhhccCCEEE-EEEc--CCCChHHHHHHh-cCCEEEE
Confidence              23446789999999999999764 4442  333334444443 3345544

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.58  E-value=1.2e-14  Score=124.96  Aligned_cols=115  Identities=18%  Similarity=0.224  Sum_probs=85.0

Q ss_pred             CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccccc
Q 010968          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDES  196 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~  196 (496)
                      .+|||+|||+|.+.+.++... ..+++|+|||+.++++|++|+..++ +.++++++.+|...                  
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~-~~~~~~~~~~D~~~------------------   61 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNG-LDDRVEVIVGDARD------------------   61 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCT-TTTTEEEEESHHHH------------------
T ss_pred             CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHcc-CCceEEEEECchhh------------------
Confidence            479999999999988887765 7899999999999999999999985 88899999988431                  


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccccc
Q 010968          197 NMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCS  276 (496)
Q Consensus       197 ~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~  276 (496)
                                                        +...  ...++||+|++||||+........                
T Consensus        62 ----------------------------------~~~~--~~~~~~D~Iv~npP~~~~~~~~~~----------------   89 (117)
T PF13659_consen   62 ----------------------------------LPEP--LPDGKFDLIVTNPPYGPRSGDKAA----------------   89 (117)
T ss_dssp             ----------------------------------HHHT--CTTT-EEEEEE--STTSBTT--------------------
T ss_pred             ----------------------------------chhh--ccCceeEEEEECCCCccccccchh----------------
Confidence                                              0000  124689999999999865322110                


Q ss_pred             CchHHHHHHHHHHHHHhhcCCeEEEEEeC
Q 010968          277 GGERAFITRIIEDSVALKQTFRWYTSMVG  305 (496)
Q Consensus       277 GGel~FI~riI~eS~~ll~~~gwftsmvG  305 (496)
                        ....+.++++.+..+++++|.+.+.++
T Consensus        90 --~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   90 --LRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             --GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --hHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence              001567888888999999999876653

...

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.57  E-value=3.5e-14  Score=149.01  Aligned_cols=111  Identities=19%  Similarity=0.159  Sum_probs=86.3

Q ss_pred             CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCC--CcEEEEEccCCCCCCcccccccCCcccc
Q 010968          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHIS--ELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~--~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      .+|||||||+|+|++.++.+.|..+|+++|+|+.|++.|++|++.|+ .+  .+++++..|..                 
T Consensus       230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~-~~~~~~v~~~~~D~l-----------------  291 (378)
T PRK15001        230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNM-PEALDRCEFMINNAL-----------------  291 (378)
T ss_pred             CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-cccCceEEEEEcccc-----------------
Confidence            58999999999999999999999999999999999999999999884 43  36777766532                 


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                            ..+  ..++||+|+|||||+.....            .    
T Consensus       292 --------------------------------------~~~--~~~~fDlIlsNPPfh~~~~~------------~----  315 (378)
T PRK15001        292 --------------------------------------SGV--EPFRFNAVLCNPPFHQQHAL------------T----  315 (378)
T ss_pred             --------------------------------------ccC--CCCCEEEEEECcCcccCccC------------C----
Confidence                                                  111  13579999999999853110            0    


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEEEEEeCC
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGR  306 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwftsmvGk  306 (496)
                           .....+|+.++...++++|++.+...+
T Consensus       316 -----~~ia~~l~~~a~~~LkpGG~L~iV~nr  342 (378)
T PRK15001        316 -----DNVAWEMFHHARRCLKINGELYIVANR  342 (378)
T ss_pred             -----HHHHHHHHHHHHHhcccCCEEEEEEec
Confidence                 123568999999999999998766543

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.52  E-value=2.3e-13  Score=129.42  Aligned_cols=143  Identities=19%  Similarity=0.288  Sum_probs=114.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      +..++|||||||++...|+... ++....++||+|.|++...+.++.|+   .+|.++..|.                  
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~---~~~~~V~tdl------------------  102 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR---VHIDVVRTDL------------------  102 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC---CccceeehhH------------------
Confidence            4679999999999998888765 57889999999999999999999985   3467766653                  


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCccccc--CCCCcccCCCCCc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAG--LNPKTSCGGTPEE  272 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~--~eP~~al~G~~~E  272 (496)
                                                           +.++.  .++.|+++-||||.+..++..  ..-..+.+|+.+ 
T Consensus       103 -------------------------------------~~~l~--~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~-  142 (209)
T KOG3191|consen  103 -------------------------------------LSGLR--NESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKD-  142 (209)
T ss_pred             -------------------------------------Hhhhc--cCCccEEEECCCcCcCCcccchhHHHHHHHhcCcc-
Confidence                                                 22332  378999999999999866432  223345677777 


Q ss_pred             ccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeE
Q 010968          273 MVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIV  325 (496)
Q Consensus       273 mv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~v  325 (496)
                            |.+.+.+++.....++.+.|||+...-+....+++++.+++.|+...
T Consensus       143 ------Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~  189 (209)
T KOG3191|consen  143 ------GREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVR  189 (209)
T ss_pred             ------hHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhccccee
Confidence                  78889999999999999999998777777778999999999988533

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.43  E-value=4.1e-12  Score=131.78  Aligned_cols=117  Identities=20%  Similarity=0.227  Sum_probs=87.7

Q ss_pred             CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccccc
Q 010968          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDES  196 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~  196 (496)
                      .+|||||||+|.++..++.+.++.+++++|+|+.|++.|++|++.|+ +.  .+++.+|..                   
T Consensus       198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~-l~--~~~~~~D~~-------------------  255 (342)
T PRK09489        198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG-LE--GEVFASNVF-------------------  255 (342)
T ss_pred             CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CC--CEEEEcccc-------------------
Confidence            47999999999999999988888999999999999999999999985 64  344444321                   


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccccc
Q 010968          197 NMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCS  276 (496)
Q Consensus       197 ~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~  276 (496)
                                                          ..+   .++||+|+|||||+.....                   
T Consensus       256 ------------------------------------~~~---~~~fDlIvsNPPFH~g~~~-------------------  277 (342)
T PRK09489        256 ------------------------------------SDI---KGRFDMIISNPPFHDGIQT-------------------  277 (342)
T ss_pred             ------------------------------------ccc---CCCccEEEECCCccCCccc-------------------
Confidence                                                111   3579999999999752110                   


Q ss_pred             CchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHH
Q 010968          277 GGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLIS  315 (496)
Q Consensus       277 GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~  315 (496)
                        ...-..++|.++..+++++|.+.....+.-..+.+++
T Consensus       278 --~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~  314 (342)
T PRK09489        278 --SLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLD  314 (342)
T ss_pred             --cHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHH
Confidence              2345688999999999999998655443333454444

>PHA03412 putative methyltransferase; Provisional

Probab=99.42  E-value=1.1e-12  Score=129.92  Aligned_cols=106  Identities=15%  Similarity=0.151  Sum_probs=78.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh---cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASL---LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSV  192 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~---~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~  192 (496)
                      ..+|||+|||+|+|++.++.+.   +..+|+|+|||+.|+++|++|+.       ++.++.+|...              
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-------~~~~~~~D~~~--------------  108 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-------EATWINADALT--------------  108 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-------CCEEEEcchhc--------------
Confidence            4589999999999999888764   35799999999999999998863       26677666421              


Q ss_pred             ccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCc
Q 010968          193 QDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEE  272 (496)
Q Consensus       193 ~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~E  272 (496)
                                                             . .   ..++||+|||||||+.....     .  ..+... 
T Consensus       109 ---------------------------------------~-~---~~~~FDlIIsNPPY~~~~~~-----d--~~ar~~-  137 (241)
T PHA03412        109 ---------------------------------------T-E---FDTLFDMAISNPPFGKIKTS-----D--FKGKYT-  137 (241)
T ss_pred             ---------------------------------------c-c---ccCCccEEEECCCCCCcccc-----c--cCCccc-
Confidence                                                   0 0   13479999999999974210     0  022222 


Q ss_pred             ccccCchHHHHHHHHHHHHHhhcCCeE
Q 010968          273 MVCSGGERAFITRIIEDSVALKQTFRW  299 (496)
Q Consensus       273 mv~~GGel~FI~riI~eS~~ll~~~gw  299 (496)
                            +..+..++|+.+.+++..+++
T Consensus       138 ------g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        138 ------GAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             ------ccHHHHHHHHHHHHHcCCCEE
Confidence                  577888899999987777775

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=5.6e-12  Score=120.71  Aligned_cols=138  Identities=25%  Similarity=0.315  Sum_probs=101.5

Q ss_pred             CCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHCCC
Q 010968           86 PTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPH  164 (496)
Q Consensus        86 PrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~N~~~N~~  164 (496)
                      +|++.-+.|+.|+.++....         +...|+|+|||+|.+++..  .+.+ .+|+|+|+|++|++.|++|+.++  
T Consensus        25 ~Tp~~~Aa~il~~a~~~g~l---------~g~~V~DlG~GTG~La~ga--~~lGa~~V~~vdiD~~a~ei~r~N~~~l--   91 (198)
T COG2263          25 RTPAPLAAYILWVAYLRGDL---------EGKTVLDLGAGTGILAIGA--ALLGASRVLAVDIDPEALEIARANAEEL--   91 (198)
T ss_pred             CCChHHHHHHHHHHHHcCCc---------CCCEEEEcCCCcCHHHHHH--HhcCCcEEEEEecCHHHHHHHHHHHHhh--
Confidence            34567799999999855431         3457999999999886544  4444 68999999999999999999984  


Q ss_pred             CCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEE
Q 010968          165 ISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDF  244 (496)
Q Consensus       165 L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDf  244 (496)
                       .++|+++..|+..                                                           -..+||.
T Consensus        92 -~g~v~f~~~dv~~-----------------------------------------------------------~~~~~dt  111 (198)
T COG2263          92 -LGDVEFVVADVSD-----------------------------------------------------------FRGKFDT  111 (198)
T ss_pred             -CCceEEEEcchhh-----------------------------------------------------------cCCccce
Confidence             3679998887531                                                           1357899


Q ss_pred             EEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCee
Q 010968          245 CICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTI  324 (496)
Q Consensus       245 ImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~  324 (496)
                      ++.||||-.....            .        ...|+..-++-|       .+. .-+++..+...+.+..++.|.+.
T Consensus       112 vimNPPFG~~~rh------------a--------Dr~Fl~~Ale~s-------~vV-YsiH~a~~~~f~~~~~~~~G~~v  163 (198)
T COG2263         112 VIMNPPFGSQRRH------------A--------DRPFLLKALEIS-------DVV-YSIHKAGSRDFVEKFAADLGGTV  163 (198)
T ss_pred             EEECCCCcccccc------------C--------CHHHHHHHHHhh-------heE-EEeeccccHHHHHHHHHhcCCeE
Confidence            9999999875322            1        366777666544       233 34556778899999999999653

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.35  E-value=9.4e-12  Score=131.48  Aligned_cols=163  Identities=15%  Similarity=0.083  Sum_probs=104.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCC-CcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHIS-ELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~-~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|||+|||+|++++.++. ....+|+++|+|+.|+++|++|++.|+ ++ ++++++.+|...                
T Consensus       221 g~rVLDlfsgtG~~~l~aa~-~ga~~V~~VD~s~~al~~a~~N~~~Ng-l~~~~v~~i~~D~~~----------------  282 (396)
T PRK15128        221 NKRVLNCFSYTGGFAVSALM-GGCSQVVSVDTSQEALDIARQNVELNK-LDLSKAEFVRDDVFK----------------  282 (396)
T ss_pred             CCeEEEeccCCCHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCcEEEEEccHHH----------------
Confidence            45899999999998765443 233589999999999999999999995 76 579999887431                


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                          ++.......++||+|++|||||.....       ++.       
T Consensus       283 ------------------------------------~l~~~~~~~~~fDlVilDPP~f~~~k~-------~l~-------  312 (396)
T PRK15128        283 ------------------------------------LLRTYRDRGEKFDVIVMDPPKFVENKS-------QLM-------  312 (396)
T ss_pred             ------------------------------------HHHHHHhcCCCCCEEEECCCCCCCChH-------HHH-------
Confidence                                                111111124579999999999975321       111       


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEEE-EEeCCcCcHHHHHHHHHHcCCeeEEEEEecCCCeeEEEEEEeeCCccccccC
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWYT-SMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIIS  353 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwft-smvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t~Rw~lAWsF~~~~~~~~~  353 (496)
                         +...-+..++..+..+++++|++. +-....-+.+.+.+.+.+....        +|+.-|  +-+....++..++.
T Consensus       313 ---~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~--------~~~~~~--~l~~~~~~~DhP~~  379 (396)
T PRK15128        313 ---GACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAID--------AGRDVQ--FIEQFRQAADHPVI  379 (396)
T ss_pred             ---HHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHH--------cCCeEE--EEEEcCCCCCCCCC
Confidence               022337788888899999998753 3333344555565555543211        233222  22334445566666


Q ss_pred             CCcccc
Q 010968          354 PHVAEK  359 (496)
Q Consensus       354 ~~~~~~  359 (496)
                      ++.+..
T Consensus       380 ~~~pe~  385 (396)
T PRK15128        380 ATYPEG  385 (396)
T ss_pred             CCCCCc
Confidence            655543

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.35  E-value=6.3e-12  Score=121.36  Aligned_cols=93  Identities=11%  Similarity=0.001  Sum_probs=66.5

Q ss_pred             HhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHH
Q 010968           71 HDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV  150 (496)
Q Consensus        71 ~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~  150 (496)
                      .++|+++.+|++.-. | |.+.....-+.+.+...        ....++||+|||+|++++.++++. ..+|+++|++++
T Consensus        19 ~~~g~~l~~~~~~~~-R-p~~d~v~e~l~~~l~~~--------~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~   87 (199)
T PRK10909         19 QWRGRKLPVPDSPGL-R-PTTDRVRETLFNWLAPV--------IVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRA   87 (199)
T ss_pred             ccCCCEeCCCCCCCc-C-cCCHHHHHHHHHHHhhh--------cCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHH
Confidence            478999999875321 4 55555444344443221        123589999999999987554443 468999999999


Q ss_pred             HHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          151 ALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       151 AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      +++.|++|++.++ ++ +++++.+|.
T Consensus        88 a~~~a~~Nl~~~~-~~-~v~~~~~D~  111 (199)
T PRK10909         88 VAQQLIKNLATLK-AG-NARVVNTNA  111 (199)
T ss_pred             HHHHHHHHHHHhC-CC-cEEEEEchH
Confidence            9999999999985 64 688888763

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.33  E-value=5.3e-11  Score=122.21  Aligned_cols=143  Identities=20%  Similarity=0.189  Sum_probs=102.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ...+||+|||+|.+.+.++  ..+.+++|+|+|+++++.|++|++.++ +.+ +.++.+|..+                 
T Consensus       183 g~~vLDp~cGtG~~lieaa--~~~~~v~g~Di~~~~~~~a~~nl~~~g-~~~-i~~~~~D~~~-----------------  241 (329)
T TIGR01177       183 GDRVLDPFCGTGGFLIEAG--LMGAKVIGCDIDWKMVAGARINLEHYG-IED-FFVKRGDATK-----------------  241 (329)
T ss_pred             cCEEEECCCCCCHHHHHHH--HhCCeEEEEcCCHHHHHHHHHHHHHhC-CCC-CeEEecchhc-----------------
Confidence            3589999999998865543  457899999999999999999999885 665 7777776431                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         +  +  ...++||+|+|||||.......          ...    
T Consensus       242 -----------------------------------l--~--~~~~~~D~Iv~dPPyg~~~~~~----------~~~----  268 (329)
T TIGR01177       242 -----------------------------------L--P--LSSESVDAIATDPPYGRSTTAA----------GDG----  268 (329)
T ss_pred             -----------------------------------C--C--cccCCCCEEEECCCCcCccccc----------CCc----
Confidence                                               0  0  0135799999999997532211          011    


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEe-cCCCeeEEE
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEF-VQGQTCRWG  339 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed-~qG~t~Rw~  339 (496)
                         ...++.++++++.+.++++||+...+....   .+.+.++++|+ .+..... ++|.-.|.+
T Consensus       269 ---~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~---~~~~~~~~~g~-i~~~~~~~~h~sl~r~i  326 (329)
T TIGR01177       269 ---LESLYERSLEEFHEVLKSEGWIVYAVPTRI---DLESLAEDAFR-VVKRFEVRVHRSLTRHI  326 (329)
T ss_pred             ---hHHHHHHHHHHHHHHccCCcEEEEEEcCCC---CHHHHHhhcCc-chheeeeeeecceEEEE
Confidence               236788999999999999999988876443   44566888898 6666553 555445554

This family is found exclusively in the Archaea.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.33  E-value=1.3e-11  Score=138.74  Aligned_cols=145  Identities=21%  Similarity=0.160  Sum_probs=105.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCC-CcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHIS-ELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~-~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|||+|||+|++++.++.. ...+|+++|+|+.|+++|++|++.|+ ++ ++++++.+|..+                
T Consensus       539 g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng-~~~~~v~~i~~D~~~----------------  600 (702)
T PRK11783        539 GKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNG-LSGRQHRLIQADCLA----------------  600 (702)
T ss_pred             CCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC-CCccceEEEEccHHH----------------
Confidence            358999999999998887753 23479999999999999999999996 76 689999887431                


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                          ++...   .++||+|||||||+...+...    ...    .   
T Consensus       601 ------------------------------------~l~~~---~~~fDlIilDPP~f~~~~~~~----~~~----~---  630 (702)
T PRK11783        601 ------------------------------------WLKEA---REQFDLIFIDPPTFSNSKRME----DSF----D---  630 (702)
T ss_pred             ------------------------------------HHHHc---CCCcCEEEECCCCCCCCCccc----hhh----h---
Confidence                                                11111   357999999999997533210    001    1   


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecCC
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQG  333 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG  333 (496)
                          ....+..++..+..+++++|++.+... ..++....+.+.+.|+....+.+.-|+
T Consensus       631 ----~~~~y~~l~~~a~~lL~~gG~l~~~~~-~~~~~~~~~~~~~~g~~~~~i~~~~~~  684 (702)
T PRK11783        631 ----VQRDHVALIKDAKRLLRPGGTLYFSNN-KRGFKMDEEGLAKLGLKAEEITAKTLP  684 (702)
T ss_pred             ----HHHHHHHHHHHHHHHcCCCCEEEEEeC-CccCChhHHHHHhCCCeEEEEecCCCC
Confidence                344588899998999999998766555 556666688888888764444444444

>PHA03411 putative methyltransferase; Provisional

Probab=99.30  E-value=1.3e-11  Score=124.62  Aligned_cols=135  Identities=14%  Similarity=0.042  Sum_probs=92.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||+|||+|.++..++.+.++.+++|+|+|+.|++.|++|..       +++++.+|...                 
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-------~v~~v~~D~~e-----------------  120 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-------EAEWITSDVFE-----------------  120 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-------CCEEEECchhh-----------------
Confidence            358999999999998877776667899999999999999998741       36777776421                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         +.     ..++||+|+|||||+....+.. ....+..|+..    
T Consensus       121 -----------------------------------~~-----~~~kFDlIIsNPPF~~l~~~d~-~~~~~~~GG~~----  155 (279)
T PHA03411        121 -----------------------------------FE-----SNEKFDVVISNPPFGKINTTDT-KDVFEYTGGEF----  155 (279)
T ss_pred             -----------------------------------hc-----ccCCCcEEEEcCCccccCchhh-hhhhhhccCcc----
Confidence                                               00     1357999999999997533221 22234444443    


Q ss_pred             cCchHHH--HHHHHHHHHHhhcCCeEEEEEeCCc------CcHHHHHHHHHHcCC
Q 010968          276 SGGERAF--ITRIIEDSVALKQTFRWYTSMVGRK------SNLKFLISKLRKVGV  322 (496)
Q Consensus       276 ~GGel~F--I~riI~eS~~ll~~~gwftsmvGk~------s~l~~L~~~L~~~g~  322 (496)
                         +..+  +.+++.....++.+.|++.....-+      -.-.+..+.|++.|+
T Consensus       156 ---g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~  207 (279)
T PHA03411        156 ---EFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGL  207 (279)
T ss_pred             ---ccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCc
Confidence               3343  4678888888877777664433311      124567788998876

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=8.2e-11  Score=120.05  Aligned_cols=142  Identities=20%  Similarity=0.234  Sum_probs=101.3

Q ss_pred             CCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCc
Q 010968           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL  168 (496)
Q Consensus        89 P~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~r  168 (496)
                      |+|.-.+.|+++++.           .+.++||+|||||.+++..+ ++.-.+++|+||||.|++.|++|+++|+ +...
T Consensus       147 pTT~lcL~~Le~~~~-----------~g~~vlDvGcGSGILaIAa~-kLGA~~v~g~DiDp~AV~aa~eNa~~N~-v~~~  213 (300)
T COG2264         147 PTTSLCLEALEKLLK-----------KGKTVLDVGCGSGILAIAAA-KLGAKKVVGVDIDPQAVEAARENARLNG-VELL  213 (300)
T ss_pred             hhHHHHHHHHHHhhc-----------CCCEEEEecCChhHHHHHHH-HcCCceEEEecCCHHHHHHHHHHHHHcC-Cchh
Confidence            888999999998886           24689999999998865433 3444579999999999999999999996 5532


Q ss_pred             EEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEEC
Q 010968          169 IEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN  248 (496)
Q Consensus       169 I~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcN  248 (496)
                      +..-..+                                                       ....  ...++||+||||
T Consensus       214 ~~~~~~~-------------------------------------------------------~~~~--~~~~~~DvIVAN  236 (300)
T COG2264         214 VQAKGFL-------------------------------------------------------LLEV--PENGPFDVIVAN  236 (300)
T ss_pred             hhccccc-------------------------------------------------------chhh--cccCcccEEEeh
Confidence            2110000                                                       0111  123689999999


Q ss_pred             CCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEE-EEeCCcCcHHHHHHHHHHcCCeeEEE
Q 010968          249 PPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYT-SMVGRKSNLKFLISKLRKVGVTIVKT  327 (496)
Q Consensus       249 PPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwft-smvGk~s~l~~L~~~L~~~g~~~vk~  327 (496)
                      =  .                           -..+.+|..+...+++++|++. +=+= .++.+.+.+.+.+.|+..+.+
T Consensus       237 I--L---------------------------A~vl~~La~~~~~~lkpgg~lIlSGIl-~~q~~~V~~a~~~~gf~v~~~  286 (300)
T COG2264         237 I--L---------------------------AEVLVELAPDIKRLLKPGGRLILSGIL-EDQAESVAEAYEQAGFEVVEV  286 (300)
T ss_pred             h--h---------------------------HHHHHHHHHHHHHHcCCCceEEEEeeh-HhHHHHHHHHHHhCCCeEeEE
Confidence            5  1                           1125678888888888888863 2232 567889999999999987766


Q ss_pred             EEe
Q 010968          328 TEF  330 (496)
Q Consensus       328 ~ed  330 (496)
                      .+.
T Consensus       287 ~~~  289 (300)
T COG2264         287 LER  289 (300)
T ss_pred             Eec
Confidence            543

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.27  E-value=1.2e-10  Score=111.39  Aligned_cols=122  Identities=11%  Similarity=0.145  Sum_probs=96.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      +.+|||||||+|.++..++...++.+|+|+|+++++++.|++|++.++ +++ ++++.+|..+                 
T Consensus        46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~-l~~-i~~~~~d~~~-----------------  106 (187)
T PRK00107         46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG-LKN-VTVVHGRAEE-----------------  106 (187)
T ss_pred             CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC-CCC-EEEEeccHhh-----------------
Confidence            468999999999999999888888999999999999999999999985 755 9998876321                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         +    . ..++||+|+||-                .   .+    
T Consensus       107 -----------------------------------~----~-~~~~fDlV~~~~----------------~---~~----  123 (187)
T PRK00107        107 -----------------------------------F----G-QEEKFDVVTSRA----------------V---AS----  123 (187)
T ss_pred             -----------------------------------C----C-CCCCccEEEEcc----------------c---cC----
Confidence                                               0    0 135799999971                0   01    


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEE
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKT  327 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~  327 (496)
                             +..+++.+..+++++|++.++.+ ......+.++.+..|...-++
T Consensus       124 -------~~~~l~~~~~~LkpGG~lv~~~~-~~~~~~l~~~~~~~~~~~~~~  167 (187)
T PRK00107        124 -------LSDLVELCLPLLKPGGRFLALKG-RDPEEEIAELPKALGGKVEEV  167 (187)
T ss_pred             -------HHHHHHHHHHhcCCCeEEEEEeC-CChHHHHHHHHHhcCceEeee
Confidence                   35567777888999999988888 677788888888888753333

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.27  E-value=1.8e-10  Score=108.49  Aligned_cols=127  Identities=16%  Similarity=0.080  Sum_probs=96.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..++||||||+|.++..++...++.+++++|+++++++.|++|++.++ +. +|+++.++...                 
T Consensus        32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~-~~-~i~~~~~d~~~-----------------   92 (187)
T PRK08287         32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG-CG-NIDIIPGEAPI-----------------   92 (187)
T ss_pred             CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC-CC-CeEEEecCchh-----------------
Confidence            458999999999999999888888999999999999999999999885 64 58887664210                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                            .+   .++||+|+++-..                        
T Consensus        93 --------------------------------------~~---~~~~D~v~~~~~~------------------------  107 (187)
T PRK08287         93 --------------------------------------EL---PGKADAIFIGGSG------------------------  107 (187)
T ss_pred             --------------------------------------hc---CcCCCEEEECCCc------------------------
Confidence                                                  00   2469999985210                        


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEec
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFV  331 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~  331 (496)
                           ..+..+++.+...++++|++....-...+...+.+.+++.|+..+.+.+..
T Consensus       108 -----~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  158 (187)
T PRK08287        108 -----GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDCVQLQ  158 (187)
T ss_pred             -----cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceEEEEE
Confidence                 013456777778888999886654347788999999999998777665543

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.26  E-value=1.6e-10  Score=98.41  Aligned_cols=59  Identities=24%  Similarity=0.303  Sum_probs=53.8

Q ss_pred             CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      .+|||||||+|.+...++...++++++|+|+|+++++.|++|+...+ ..++|+++..|.
T Consensus         3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~i~~~~~d~   61 (112)
T PF12847_consen    3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG-LSDRITFVQGDA   61 (112)
T ss_dssp             CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT-TTTTEEEEESCC
T ss_pred             CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEECcc
Confidence            58999999999999999887899999999999999999999997664 788999998874

...

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.22  E-value=2.9e-10  Score=112.42  Aligned_cols=119  Identities=14%  Similarity=0.082  Sum_probs=86.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||+|||+|.+++.++. ....+++|+|+|+.+++.|++|++.|+ +.+++.+..+                     
T Consensus       120 ~~~VLDiGcGsG~l~i~~~~-~g~~~v~giDis~~~l~~A~~n~~~~~-~~~~~~~~~~---------------------  176 (250)
T PRK00517        120 GKTVLDVGCGSGILAIAAAK-LGAKKVLAVDIDPQAVEAARENAELNG-VELNVYLPQG---------------------  176 (250)
T ss_pred             CCEEEEeCCcHHHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcC-CCceEEEccC---------------------
Confidence            46899999999988765543 333469999999999999999999985 5433332110                     


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                                 +.+||+|+||..                         
T Consensus       177 -------------------------------------------~~~fD~Vvani~-------------------------  188 (250)
T PRK00517        177 -------------------------------------------DLKADVIVANIL-------------------------  188 (250)
T ss_pred             -------------------------------------------CCCcCEEEEcCc-------------------------
Confidence                                                       126999999941                         


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEE
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTE  329 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~e  329 (496)
                          ...+..++.+...+++++|++...--...+.+.+.+.+++.|+..+.+.+
T Consensus       189 ----~~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~  238 (250)
T PRK00517        189 ----ANPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLE  238 (250)
T ss_pred             ----HHHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEE
Confidence                11256778888888899988754422256788999999999998776654

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.22  E-value=2.3e-10  Score=108.55  Aligned_cols=125  Identities=18%  Similarity=0.203  Sum_probs=92.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..++||||||+|.++..++...++.+|+|+|+|+.+++.|++|++.++ ++ +|+++.+|..+                 
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~-~~-~i~~i~~d~~~-----------------  103 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG-LN-NVEIVNGRAED-----------------  103 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC-CC-CeEEEecchhh-----------------
Confidence            458999999999999888877778899999999999999999999885 64 59998886421                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         +     ...++||+|+||. + .                 +    
T Consensus       104 -----------------------------------~-----~~~~~fD~I~s~~-~-~-----------------~----  120 (181)
T TIGR00138       104 -----------------------------------F-----QHEEQFDVITSRA-L-A-----------------S----  120 (181)
T ss_pred             -----------------------------------c-----cccCCccEEEehh-h-h-----------------C----
Confidence                                               1     0135799999984 1 0                 0    


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHH---cCCeeEEEEEe
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRK---VGVTIVKTTEF  330 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~---~g~~~vk~~ed  330 (496)
                             +..+++....+++++|.+....| ......+....+.   .|+..++.-.+
T Consensus       121 -------~~~~~~~~~~~LkpgG~lvi~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~~  170 (181)
T TIGR00138       121 -------LNVLLELTLNLLKVGGYFLAYKG-KKYLDEIEEAKRKCQVLGVEPLEVPPL  170 (181)
T ss_pred             -------HHHHHHHHHHhcCCCCEEEEEcC-CCcHHHHHHHHHhhhhcCceEeecccc
Confidence                   23344555667888998888877 6666666666555   68877765443

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.20  E-value=1.3e-10  Score=118.52  Aligned_cols=137  Identities=19%  Similarity=0.267  Sum_probs=95.6

Q ss_pred             CCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCc
Q 010968           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL  168 (496)
Q Consensus        89 P~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~r  168 (496)
                      |+|.-.+.+++++..           ...+|||+|||||.++++. +++...+|+|+||||.|++.|++|++.|+ +.++
T Consensus       146 ~TT~lcl~~l~~~~~-----------~g~~vLDvG~GSGILaiaA-~klGA~~v~a~DiDp~Av~~a~~N~~~N~-~~~~  212 (295)
T PF06325_consen  146 PTTRLCLELLEKYVK-----------PGKRVLDVGCGSGILAIAA-AKLGAKKVVAIDIDPLAVEAARENAELNG-VEDR  212 (295)
T ss_dssp             HHHHHHHHHHHHHSS-----------TTSEEEEES-TTSHHHHHH-HHTTBSEEEEEESSCHHHHHHHHHHHHTT--TTC
T ss_pred             HHHHHHHHHHHHhcc-----------CCCEEEEeCCcHHHHHHHH-HHcCCCeEEEecCCHHHHHHHHHHHHHcC-CCee
Confidence            667777888877753           2358999999999876543 34444589999999999999999999995 8887


Q ss_pred             EEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEEC
Q 010968          169 IEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN  248 (496)
Q Consensus       169 I~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcN  248 (496)
                      +.+....                                                      +.      ..++||+|++|
T Consensus       213 ~~v~~~~------------------------------------------------------~~------~~~~~dlvvAN  232 (295)
T PF06325_consen  213 IEVSLSE------------------------------------------------------DL------VEGKFDLVVAN  232 (295)
T ss_dssp             EEESCTS------------------------------------------------------CT------CCS-EEEEEEE
T ss_pred             EEEEEec------------------------------------------------------cc------ccccCCEEEEC
Confidence            7653100                                                      00      13689999999


Q ss_pred             CCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEE-EEeCCcCcHHHHHHHHHHcCCeeEEE
Q 010968          249 PPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYT-SMVGRKSNLKFLISKLRKVGVTIVKT  327 (496)
Q Consensus       249 PPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwft-smvGk~s~l~~L~~~L~~~g~~~vk~  327 (496)
                      ==                             ...+..|+.+...+++++|++. +=+= ..+...+++.+++ |+..++.
T Consensus       233 I~-----------------------------~~vL~~l~~~~~~~l~~~G~lIlSGIl-~~~~~~v~~a~~~-g~~~~~~  281 (295)
T PF06325_consen  233 IL-----------------------------ADVLLELAPDIASLLKPGGYLILSGIL-EEQEDEVIEAYKQ-GFELVEE  281 (295)
T ss_dssp             S------------------------------HHHHHHHHHHCHHHEEEEEEEEEEEEE-GGGHHHHHHHHHT-TEEEEEE
T ss_pred             CC-----------------------------HHHHHHHHHHHHHhhCCCCEEEEcccc-HHHHHHHHHHHHC-CCEEEEE
Confidence            51                             2235667777777888887763 3333 5678899999977 9876665


Q ss_pred             EE
Q 010968          328 TE  329 (496)
Q Consensus       328 ~e  329 (496)
                      .+
T Consensus       282 ~~  283 (295)
T PF06325_consen  282 RE  283 (295)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.18  E-value=3.1e-10  Score=108.18  Aligned_cols=143  Identities=15%  Similarity=0.113  Sum_probs=103.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..++||+|||+|.+++.++... +..+++++|+++++++.|++|++.++ +.++++++.+|..+                
T Consensus        41 ~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g-~~~~v~~~~~d~~~----------------  103 (198)
T PRK00377         41 GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG-VLNNIVLIKGEAPE----------------  103 (198)
T ss_pred             cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC-CCCCeEEEEechhh----------------
Confidence            4589999999999988877654 45799999999999999999999985 66778888776321                


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                          .+..   ..+.||.|+++..                  ..    
T Consensus       104 ------------------------------------~l~~---~~~~~D~V~~~~~------------------~~----  122 (198)
T PRK00377        104 ------------------------------------ILFT---INEKFDRIFIGGG------------------SE----  122 (198)
T ss_pred             ------------------------------------hHhh---cCCCCCEEEECCC------------------cc----
Confidence                                                1111   1247999998631                  01    


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecCCCeeEEEEEEee
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSF  344 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t~Rw~lAWsF  344 (496)
                             -+..+++++...++++|.+....-...++..+...|++.|+ .+++++....+..++.-.+.|
T Consensus       123 -------~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~~~~~~~~~~~  184 (198)
T PRK00377        123 -------KLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF-NLEITEVIIAKGMKTKVGTAM  184 (198)
T ss_pred             -------cHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC-CeEEEEEehhhcccccCCcEe
Confidence                   14567778778888999877666557788899999999998 677777665444343333333

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.18  E-value=3.9e-10  Score=120.33  Aligned_cols=93  Identities=13%  Similarity=0.126  Sum_probs=68.5

Q ss_pred             HhcCcEEEecCCCeeCCC-CCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcH
Q 010968           71 HDHGLNWWIPDGQLCPTV-PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (496)
Q Consensus        71 ~ffGL~~~Vp~g~LiPrv-P~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~  149 (496)
                      +++|+.|.+.++.+.-.- ...+..+.++.+.+..         ....++||+|||+|++++.|+...  .+++|+|+|+
T Consensus       261 ~~~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~---------~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~  329 (443)
T PRK13168        261 PEFGLRLAFSPRDFIQVNAQVNQKMVARALEWLDP---------QPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVE  329 (443)
T ss_pred             EcCCeEEEECCCCeEEcCHHHHHHHHHHHHHHhcC---------CCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCH
Confidence            356788888888886531 1123344444444431         123589999999999998887653  6899999999


Q ss_pred             HHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          150 VALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       150 ~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      +|++.|++|++.|+ +. +++++.+|.
T Consensus       330 ~al~~A~~n~~~~~-~~-~v~~~~~d~  354 (443)
T PRK13168        330 AMVERARENARRNG-LD-NVTFYHANL  354 (443)
T ss_pred             HHHHHHHHHHHHcC-CC-ceEEEEeCh
Confidence            99999999999985 64 589988874

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.18  E-value=6.7e-10  Score=112.30  Aligned_cols=123  Identities=17%  Similarity=0.178  Sum_probs=89.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||+|||+|.+++.++ +....+++|+|+|+.|++.|++|++.|+ +..++.++..+..                  
T Consensus       160 g~~VLDvGcGsG~lai~aa-~~g~~~V~avDid~~al~~a~~n~~~n~-~~~~~~~~~~~~~------------------  219 (288)
T TIGR00406       160 DKNVIDVGCGSGILSIAAL-KLGAAKVVGIDIDPLAVESARKNAELNQ-VSDRLQVKLIYLE------------------  219 (288)
T ss_pred             CCEEEEeCCChhHHHHHHH-HcCCCeEEEEECCHHHHHHHHHHHHHcC-CCcceEEEecccc------------------
Confidence            3589999999998876655 3445689999999999999999999995 7777766544311                  


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                           ..   ..++||+|+||...                        
T Consensus       220 -------------------------------------~~---~~~~fDlVvan~~~------------------------  235 (288)
T TIGR00406       220 -------------------------------------QP---IEGKADVIVANILA------------------------  235 (288)
T ss_pred             -------------------------------------cc---cCCCceEEEEecCH------------------------
Confidence                                                 00   13579999999621                        


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEE-EeCCcCcHHHHHHHHHHcCCeeEEEEE
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTS-MVGRKSNLKFLISKLRKVGVTIVKTTE  329 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwfts-mvGk~s~l~~L~~~L~~~g~~~vk~~e  329 (496)
                           ..+.+++.+...+++++|++.. .+. .++...+++.+++. +..+.+.+
T Consensus       236 -----~~l~~ll~~~~~~LkpgG~li~sgi~-~~~~~~v~~~~~~~-f~~~~~~~  283 (288)
T TIGR00406       236 -----EVIKELYPQFSRLVKPGGWLILSGIL-ETQAQSVCDAYEQG-FTVVEIRQ  283 (288)
T ss_pred             -----HHHHHHHHHHHHHcCCCcEEEEEeCc-HhHHHHHHHHHHcc-CceeeEec
Confidence                 1245677777778888887644 455 67788899989876 76665543

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.13  E-value=1.5e-09  Score=116.06  Aligned_cols=86  Identities=15%  Similarity=0.163  Sum_probs=64.8

Q ss_pred             HhHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCc
Q 010968           69 LLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT  148 (496)
Q Consensus        69 L~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs  148 (496)
                      .+.|||.+|.++++++ +    ++..+.+    +.   +      ....+|||||||+|+++..|+... +++++|+|+|
T Consensus       238 ~~~f~g~~~~v~~~v~-~----te~l~~~----~~---~------~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS  298 (475)
T PLN02336        238 YERVFGEGFVSTGGLE-T----TKEFVDK----LD---L------KPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLS  298 (475)
T ss_pred             HHHHhCCCCCCCchHH-H----HHHHHHh----cC---C------CCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECC
Confidence            3568999999998887 1    2222222    11   1      124589999999999988887654 7899999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          149 DVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       149 ~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      +.+++.|++|+..   +..+++++.+|.
T Consensus       299 ~~~l~~A~~~~~~---~~~~v~~~~~d~  323 (475)
T PLN02336        299 VNMISFALERAIG---RKCSVEFEVADC  323 (475)
T ss_pred             HHHHHHHHHHhhc---CCCceEEEEcCc
Confidence            9999999999863   345788888774

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.12  E-value=6.4e-10  Score=105.93  Aligned_cols=135  Identities=10%  Similarity=0.062  Sum_probs=96.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..++||||||+|.+...++.+.|+.+|+|+|+++++++.|++|+..++ +. +|+++.+|...                 
T Consensus        17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~-l~-ni~~i~~d~~~-----------------   77 (194)
T TIGR00091        17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG-LK-NLHVLCGDANE-----------------   77 (194)
T ss_pred             CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC-CC-CEEEEccCHHH-----------------
Confidence            458999999999999999998999999999999999999999999885 65 79998887421                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCC--CccCcccccCCCCcccCCCCCcc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPP--FFESMEEAGLNPKTSCGGTPEEM  273 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPP--Y~~s~eea~~eP~~al~G~~~Em  273 (496)
                                                         ++.... +.+.||.+++|+|  +...    .+.++.         
T Consensus        78 -----------------------------------~~~~~~-~~~~~d~v~~~~pdpw~k~----~h~~~r---------  108 (194)
T TIGR00091        78 -----------------------------------LLDKFF-PDGSLSKVFLNFPDPWPKK----RHNKRR---------  108 (194)
T ss_pred             -----------------------------------HHHhhC-CCCceeEEEEECCCcCCCC----Cccccc---------
Confidence                                               010111 2347999999975  3221    111111         


Q ss_pred             cccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcC-CeeE
Q 010968          274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVG-VTIV  325 (496)
Q Consensus       274 v~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g-~~~v  325 (496)
                             .....++++...+++++|++.+..........+.+.+.+.+ +..+
T Consensus       109 -------~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~  154 (194)
T TIGR00091       109 -------ITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENT  154 (194)
T ss_pred             -------cCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEec
Confidence                   01255677777889999998776664555777888888876 4443

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.12  E-value=5.7e-10  Score=107.13  Aligned_cols=132  Identities=13%  Similarity=0.099  Sum_probs=95.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||||||+|.+...|+...++.+++|+|+|+++++.|++|++.++ + .+++++.+|...                 
T Consensus        41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~-~-~~v~~~~~d~~~-----------------  101 (202)
T PRK00121         41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG-L-TNLRLLCGDAVE-----------------  101 (202)
T ss_pred             CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC-C-CCEEEEecCHHH-----------------
Confidence            468999999999998888887888899999999999999999999885 5 468888776310                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCC--ccCcccccCCCCcccCCCCCcc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPF--FESMEEAGLNPKTSCGGTPEEM  273 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY--~~s~eea~~eP~~al~G~~~Em  273 (496)
                                                         .+.... +.+.||.|++|.|.  .....            ...  
T Consensus       102 -----------------------------------~l~~~~-~~~~~D~V~~~~~~p~~~~~~------------~~~--  131 (202)
T PRK00121        102 -----------------------------------VLLDMF-PDGSLDRIYLNFPDPWPKKRH------------HKR--  131 (202)
T ss_pred             -----------------------------------HHHHHc-CccccceEEEECCCCCCCccc------------ccc--
Confidence                                               010000 23579999998653  21100            000  


Q ss_pred             cccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCC
Q 010968          274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGV  322 (496)
Q Consensus       274 v~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~  322 (496)
                            ......++++...+++++|++....-.......+.+.+++.|+
T Consensus       132 ------~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~  174 (202)
T PRK00121        132 ------RLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGG  174 (202)
T ss_pred             ------ccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcc
Confidence                  0113556677777888999887766656778899999999986

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.10  E-value=1.3e-09  Score=103.26  Aligned_cols=128  Identities=16%  Similarity=0.177  Sum_probs=85.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCe---------eEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWS---------FVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQES  186 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~---------v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~  186 (496)
                      ...+||-.||||-|.+-.+....+..         ++|+|||+++++.|++|++..+ +.+.|.+.+.|...        
T Consensus        29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag-~~~~i~~~~~D~~~--------   99 (179)
T PF01170_consen   29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG-VEDYIDFIQWDARE--------   99 (179)
T ss_dssp             TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT--CGGEEEEE--GGG--------
T ss_pred             CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc-cCCceEEEecchhh--------
Confidence            35899999999999877666555555         9999999999999999999985 88889998876431        


Q ss_pred             ccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCccc
Q 010968          187 LTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSC  266 (496)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al  266 (496)
                                                                   +.   ...+.+|+|||||||-.......       
T Consensus       100 ---------------------------------------------l~---~~~~~~d~IvtnPPyG~r~~~~~-------  124 (179)
T PF01170_consen  100 ---------------------------------------------LP---LPDGSVDAIVTNPPYGRRLGSKK-------  124 (179)
T ss_dssp             ---------------------------------------------GG---GTTSBSCEEEEE--STTSHCHHH-------
T ss_pred             ---------------------------------------------cc---cccCCCCEEEECcchhhhccCHH-------
Confidence                                                         11   12458999999999976432111       


Q ss_pred             CCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCe
Q 010968          267 GGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVT  323 (496)
Q Consensus       267 ~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~  323 (496)
                          +       ...||..++++..+.+..  |...++.....+.   +.+...++.
T Consensus       125 ----~-------~~~ly~~~~~~~~~~l~~--~~v~l~~~~~~~~---~~~~~~~~~  165 (179)
T PF01170_consen  125 ----D-------LEKLYRQFLRELKRVLKP--RAVFLTTSNRELE---KALGLKGWR  165 (179)
T ss_dssp             ----H-------HHHHHHHHHHHHHCHSTT--CEEEEEESCCCHH---HHHTSTTSE
T ss_pred             ----H-------HHHHHHHHHHHHHHHCCC--CEEEEEECCHHHH---HHhcchhhc
Confidence                1       367899999998886665  5555555454444   344444554

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.08  E-value=1.4e-09  Score=116.09  Aligned_cols=149  Identities=16%  Similarity=0.152  Sum_probs=101.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|||+|||+|..+..++... ++.+++|+|+++.+++.+++|+++++ +.+ |+++.+|...                
T Consensus       251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g-~~~-v~~~~~D~~~----------------  312 (444)
T PRK14902        251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG-LTN-IETKALDARK----------------  312 (444)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCe-EEEEeCCccc----------------
Confidence            3589999999999998888776 46799999999999999999999985 754 8888887431                


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                          +...+   .+.||+|++|||+..... ..++|..........+.
T Consensus       313 ------------------------------------~~~~~---~~~fD~Vl~D~Pcsg~G~-~~~~p~~~~~~~~~~~~  352 (444)
T PRK14902        313 ------------------------------------VHEKF---AEKFDKILVDAPCSGLGV-IRRKPDIKYNKTKEDIE  352 (444)
T ss_pred             ------------------------------------ccchh---cccCCEEEEcCCCCCCee-eccCcchhhcCCHHHHH
Confidence                                                00001   157999999999874322 23456555443332000


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEEE---EEeCCcCcHHHHHHHHHHcC-CeeE
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWYT---SMVGRKSNLKFLISKLRKVG-VTIV  325 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwft---smvGk~s~l~~L~~~L~~~g-~~~v  325 (496)
                         .-......+++.+..+++++|.+.   +-+....+...+...+++.+ +..+
T Consensus       353 ---~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~  404 (444)
T PRK14902        353 ---SLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFELV  404 (444)
T ss_pred             ---HHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEe
Confidence               012234678999999999998765   34554455555566677654 4433

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.08  E-value=8.4e-09  Score=99.49  Aligned_cols=59  Identities=15%  Similarity=0.201  Sum_probs=50.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.++..++... ++.+++|+|+++.+++.|++|++.++ + ++++++.+|.
T Consensus        46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~-~~v~~~~~d~  105 (231)
T TIGR02752        46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG-L-HNVELVHGNA  105 (231)
T ss_pred             CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-C-CceEEEEech
Confidence            3589999999999988888765 56799999999999999999998774 5 4688887764

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.05  E-value=8.6e-10  Score=112.75  Aligned_cols=90  Identities=13%  Similarity=0.186  Sum_probs=64.8

Q ss_pred             CcEEEecCCCeeCCCCC-cHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHH
Q 010968           74 GLNWWIPDGQLCPTVPN-RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL  152 (496)
Q Consensus        74 GL~~~Vp~g~LiPrvP~-R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL  152 (496)
                      |+.|.+.++....+-+. .+.++..+.+.+...         .+.+|||+|||+|.+++.|+.  .+.+|+|+|+++.|+
T Consensus       140 ~~~~~~~~~sF~Q~n~~~~~~l~~~v~~~l~~~---------~~~~VLDl~cG~G~~sl~la~--~~~~V~gvD~s~~av  208 (315)
T PRK03522        140 GVPLFIRPQSFFQTNPAVAAQLYATARDWVREL---------PPRSMWDLFCGVGGFGLHCAT--PGMQLTGIEISAEAI  208 (315)
T ss_pred             CEEEEECCCeeeecCHHHHHHHHHHHHHHHHhc---------CCCEEEEccCCCCHHHHHHHh--cCCEEEEEeCCHHHH
Confidence            45667777777664211 123333444444321         235899999999999888876  457999999999999


Q ss_pred             HHHHHHHHHCCCCCCcEEEEEccC
Q 010968          153 EWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       153 ~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      +.|++|++.|+ + .+++++.+|.
T Consensus       209 ~~A~~n~~~~~-l-~~v~~~~~D~  230 (315)
T PRK03522        209 ACAKQSAAELG-L-TNVQFQALDS  230 (315)
T ss_pred             HHHHHHHHHcC-C-CceEEEEcCH
Confidence            99999999995 7 5799988874

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.04  E-value=2.5e-09  Score=97.20  Aligned_cols=61  Identities=25%  Similarity=0.339  Sum_probs=52.1

Q ss_pred             CCCeEEEEcCchhHHHHHHHHH-hcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          115 DKVKGFDIGTGANCIYPLLGAS-LLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~-~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      +..+|||+|||+|.+...|+.+ .++.+++|+|+|+++++.|+++++.++ +. +++++.+|..
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~-~~-ni~~~~~d~~   64 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG-LD-NIEFIQGDIE   64 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT-ST-TEEEEESBTT
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc-cc-ccceEEeehh
Confidence            3568999999999999888844 568899999999999999999999885 66 8999988754

...

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.99  E-value=5.2e-09  Score=111.38  Aligned_cols=145  Identities=15%  Similarity=0.108  Sum_probs=100.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||+|||+|.....++...++.+++|+|+++.+++.+++|+++++ +.  ++++.+|...  +              
T Consensus       245 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g-~~--~~~~~~D~~~--~--------------  305 (427)
T PRK10901        245 GERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG-LK--ATVIVGDARD--P--------------  305 (427)
T ss_pred             CCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC-CC--eEEEEcCccc--c--------------
Confidence            458999999999998888877766899999999999999999999985 54  6777776421  0              


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                              +         .++     ..++||.|++|||+...... ..+|..........+ .
T Consensus       306 ------------------------~---------~~~-----~~~~fD~Vl~D~Pcs~~G~~-~~~p~~~~~~~~~~l-~  345 (427)
T PRK10901        306 ------------------------A---------QWW-----DGQPFDRILLDAPCSATGVI-RRHPDIKWLRRPEDI-A  345 (427)
T ss_pred             ------------------------h---------hhc-----ccCCCCEEEECCCCCccccc-ccCccccccCCHHHH-H
Confidence                                    0         001     13579999999999754322 234444332222100 0


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEE---EEeCCcCcHHHHHHHHHHcC
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYT---SMVGRKSNLKFLISKLRKVG  321 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwft---smvGk~s~l~~L~~~L~~~g  321 (496)
                      .  -.....++++.+..+++++|++.   +.+....+...+...+++++
T Consensus       346 ~--l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~  392 (427)
T PRK10901        346 A--LAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHP  392 (427)
T ss_pred             H--HHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCC
Confidence            0  01346789999999999998864   34555677777777887753

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=98.96  E-value=2e-08  Score=86.31  Aligned_cols=57  Identities=23%  Similarity=0.158  Sum_probs=50.0

Q ss_pred             CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      .++||||||+|..+..++.+.++.+++|+|+++.+++.|++|++.++ +. +++++..|
T Consensus        21 ~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~-~~~~~~~~   77 (124)
T TIGR02469        21 DVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG-VS-NIVIVEGD   77 (124)
T ss_pred             CEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC-CC-ceEEEecc
Confidence            48999999999999989888888999999999999999999999874 54 57777665

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.96  E-value=4e-08  Score=102.27  Aligned_cols=148  Identities=14%  Similarity=-0.002  Sum_probs=97.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||||||+|.+...++...++.+++++|+|+.+++.|+++...+     +++++.+|..+                 
T Consensus       114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~-----~i~~i~gD~e~-----------------  171 (340)
T PLN02490        114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-----ECKIIEGDAED-----------------  171 (340)
T ss_pred             CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc-----CCeEEeccHHh-----------------
Confidence            45899999999999888887777789999999999999999987533     36666665321                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         +  ++  .++.||+|+||..+....+                   
T Consensus       172 -----------------------------------l--p~--~~~sFDvVIs~~~L~~~~d-------------------  193 (340)
T PLN02490        172 -----------------------------------L--PF--PTDYADRYVSAGSIEYWPD-------------------  193 (340)
T ss_pred             -----------------------------------C--CC--CCCceeEEEEcChhhhCCC-------------------
Confidence                                               0  00  2457999999876542111                   


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEe--C--------------CcCcHHHHHHHHHHcCCeeEEEEEecCCCe----
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMV--G--------------RKSNLKFLISKLRKVGVTIVKTTEFVQGQT----  335 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmv--G--------------k~s~l~~L~~~L~~~g~~~vk~~ed~qG~t----  335 (496)
                             ..+++++...+++++|++...-  .              ...+.+++.+.|++.|+..+++ +++.+..    
T Consensus       194 -------~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i-~~i~~~~~~~~  265 (340)
T PLN02490        194 -------PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL-KRIGPKWYRGV  265 (340)
T ss_pred             -------HHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE-EEcChhhcccc
Confidence                   1234555555666666653321  0              0235688999999999998876 4544442    


Q ss_pred             eEEEEEEeeCCccccc
Q 010968          336 CRWGLAWSFVPPARKI  351 (496)
Q Consensus       336 ~Rw~lAWsF~~~~~~~  351 (496)
                      +|..+.|+..-.++|.
T Consensus       266 ~~~~~~~~~~v~~~k~  281 (340)
T PLN02490        266 RRHGLIMGCSVTGVKP  281 (340)
T ss_pred             ccccceeeEEEEEecc
Confidence            3456666655444443

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.95  E-value=3.3e-09  Score=111.24  Aligned_cols=90  Identities=10%  Similarity=0.093  Sum_probs=62.6

Q ss_pred             CcEEEecCCCeeCCCCC-cHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHH
Q 010968           74 GLNWWIPDGQLCPTVPN-RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL  152 (496)
Q Consensus        74 GL~~~Vp~g~LiPrvP~-R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL  152 (496)
                      |+.|.++++...-+.+. ++.+..++.+.+...         ...++||+|||+|.+++.++.  .+.+|+|+|+++.|+
T Consensus       200 g~~~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~~---------~~~~vLDL~cG~G~~~l~la~--~~~~v~~vE~~~~av  268 (374)
T TIGR02085       200 DVPLVIRPQSFFQTNPKVAAQLYATARQWVREI---------PVTQMWDLFCGVGGFGLHCAG--PDTQLTGIEIESEAI  268 (374)
T ss_pred             CEEEEECCCccccCCHHHHHHHHHHHHHHHHhc---------CCCEEEEccCCccHHHHHHhh--cCCeEEEEECCHHHH
Confidence            44556666655544221 122334444444311         124899999999999888874  457899999999999


Q ss_pred             HHHHHHHHHCCCCCCcEEEEEccC
Q 010968          153 EWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       153 ~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      +.|++|++.|+ ++ +++++.+|.
T Consensus       269 ~~a~~N~~~~~-~~-~~~~~~~d~  290 (374)
T TIGR02085       269 ACAQQSAQMLG-LD-NLSFAALDS  290 (374)
T ss_pred             HHHHHHHHHcC-CC-cEEEEECCH
Confidence            99999999995 64 788888764

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.93  E-value=4.1e-09  Score=100.80  Aligned_cols=93  Identities=12%  Similarity=-0.009  Sum_probs=65.0

Q ss_pred             hcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHH
Q 010968           72 DHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA  151 (496)
Q Consensus        72 ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~A  151 (496)
                      +-|..+..|++.-..  |...-.-+.+...+...        -...++||++||||.+++.++.+. ...++++|+++.|
T Consensus        16 ~kg~~l~~p~~~~~r--pt~~~vrea~f~~l~~~--------~~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a   84 (189)
T TIGR00095        16 RGGRLLKLPPGGSTR--PTTRVVRELFFNILRPE--------IQGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKA   84 (189)
T ss_pred             hCCcccCCCCCCCCC--CchHHHHHHHHHHHHHh--------cCCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHH
Confidence            345566667664433  33333333334444321        123589999999999988877653 2489999999999


Q ss_pred             HHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          152 LEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       152 L~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ++.+++|++.|+ ++++++++..|.
T Consensus        85 ~~~~~~N~~~~~-~~~~~~~~~~D~  108 (189)
T TIGR00095        85 NQTLKENLALLK-SGEQAEVVRNSA  108 (189)
T ss_pred             HHHHHHHHHHhC-CcccEEEEehhH
Confidence            999999999995 777899988874

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PLN02244 tocopherol O-methyltransferase

Probab=98.91  E-value=7.3e-08  Score=99.81  Aligned_cols=85  Identities=19%  Similarity=0.240  Sum_probs=62.3

Q ss_pred             CCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCc
Q 010968           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL  168 (496)
Q Consensus        89 P~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~r  168 (496)
                      ..+..-+..+.+++....++.. ......+|||||||+|.+...|+.++ +.+|+|+|+|+.+++.|+++++.++ +.++
T Consensus        93 ~~~~aq~~~~~~~l~~~~~~~~-~~~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g-~~~~  169 (340)
T PLN02244         93 DHRQAQIRMIEESLAWAGVPDD-DEKRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQG-LSDK  169 (340)
T ss_pred             cHHHHHHHHHHHHHHhcCCCcc-cCCCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcC-CCCc
Confidence            3444445566666654322110 01234689999999999988887655 7899999999999999999999885 7778


Q ss_pred             EEEEEccC
Q 010968          169 IEIRKVDN  176 (496)
Q Consensus       169 I~~v~~d~  176 (496)
                      |+++.+|.
T Consensus       170 v~~~~~D~  177 (340)
T PLN02244        170 VSFQVADA  177 (340)
T ss_pred             eEEEEcCc
Confidence            99988874

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.90  E-value=6.2e-09  Score=96.73  Aligned_cols=56  Identities=9%  Similarity=0.063  Sum_probs=47.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ..++||||||+|.+...++.+  +.+++|+|+|+.+++.+++|+...    .+++++.+|..
T Consensus        14 ~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~----~~v~ii~~D~~   69 (169)
T smart00650       14 GDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAA----DNLTVIHGDAL   69 (169)
T ss_pred             cCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccC----CCEEEEECchh
Confidence            358999999999998888765  579999999999999999998642    36888888743

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.90  E-value=1.9e-08  Score=99.45  Aligned_cols=58  Identities=14%  Similarity=0.229  Sum_probs=50.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      +.+|||+|||+|.++..|+..  +.+|+|+|+|+++++.|+++++..+ +..+++++.++.
T Consensus        45 ~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g-~~~~v~~~~~d~  102 (255)
T PRK11036         45 PLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKG-VSDNMQFIHCAA  102 (255)
T ss_pred             CCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcC-CccceEEEEcCH
Confidence            468999999999988777754  6799999999999999999998874 777888888763

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.88  E-value=1.1e-07  Score=91.47  Aligned_cols=60  Identities=13%  Similarity=0.175  Sum_probs=51.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...++...+ ..+|+++|+++++++.|++|++.++ +.++++++.+|.
T Consensus        73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~-~~~~v~~~~~d~  133 (205)
T PRK13944         73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG-YWGVVEVYHGDG  133 (205)
T ss_pred             CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCCcEEEEECCc
Confidence            35899999999999888877654 4699999999999999999999885 767789888774

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.87  E-value=3.4e-08  Score=105.07  Aligned_cols=147  Identities=14%  Similarity=0.070  Sum_probs=99.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||+|||+|.....++...+..+++|+|+++++++.+++|+++++ +..++.+..+|...                 
T Consensus       239 g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g-~~~~v~~~~~d~~~-----------------  300 (426)
T TIGR00563       239 EETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLG-LTIKAETKDGDGRG-----------------  300 (426)
T ss_pred             CCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcC-CCeEEEEecccccc-----------------
Confidence            358999999999999888877777899999999999999999999985 65333334443210                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                              +         ..+    ...++||.|+++||+..+.-- ...|......+..++. 
T Consensus       301 ------------------------~---------~~~----~~~~~fD~VllDaPcSg~G~~-~~~p~~~~~~~~~~~~-  341 (426)
T TIGR00563       301 ------------------------P---------SQW----AENEQFDRILLDAPCSATGVI-RRHPDIKWLRKPRDIA-  341 (426)
T ss_pred             ------------------------c---------ccc----ccccccCEEEEcCCCCCCccc-ccCcchhhcCCHHHHH-
Confidence                                    0         000    123579999999998765332 2345544333322000 


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEE---EEeCCcCcHHHHHHHHHHcC
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYT---SMVGRKSNLKFLISKLRKVG  321 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwft---smvGk~s~l~~L~~~L~~~g  321 (496)
                        .-...-.+|++++..+++++|.+.   +-+....+-..+...|.+++
T Consensus       342 --~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~  388 (426)
T TIGR00563       342 --ELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHP  388 (426)
T ss_pred             --HHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCC
Confidence              012235678899999899988763   44555667777777887764

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.86  E-value=1.1e-07  Score=94.42  Aligned_cols=59  Identities=22%  Similarity=0.199  Sum_probs=47.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.....++... +..+|+|+|+++.+++.|++|++.++ + .+++++.+|.
T Consensus        78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g-~-~~v~~~~~d~  137 (272)
T PRK11873         78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG-Y-TNVEFRLGEI  137 (272)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC-C-CCEEEEEcch
Confidence            4589999999998766666544 45689999999999999999998874 5 3688877763

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.86  E-value=1.3e-08  Score=101.28  Aligned_cols=70  Identities=14%  Similarity=0.161  Sum_probs=54.0

Q ss_pred             HhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 010968           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI  171 (496)
Q Consensus        92 ~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~  171 (496)
                      .+.+.+|.+.+..         ....+|||||||+|.+...|+.+  ..+++|+|+|+.+++.+++++...    .++++
T Consensus        15 ~~~~~~iv~~~~~---------~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~----~~v~i   79 (258)
T PRK14896         15 DRVVDRIVEYAED---------TDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAA----GNVEI   79 (258)
T ss_pred             HHHHHHHHHhcCC---------CCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccC----CCEEE
Confidence            3556666665542         12358999999999998888766  468999999999999999988542    46899


Q ss_pred             EEccC
Q 010968          172 RKVDN  176 (496)
Q Consensus       172 v~~d~  176 (496)
                      +.+|.
T Consensus        80 i~~D~   84 (258)
T PRK14896         80 IEGDA   84 (258)
T ss_pred             EEecc
Confidence            88874

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.86  E-value=1.1e-07  Score=98.46  Aligned_cols=95  Identities=23%  Similarity=0.405  Sum_probs=63.4

Q ss_pred             EEEecCCCeeC---CCCCcHhHHHHHH-HHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHH
Q 010968           76 NWWIPDGQLCP---TVPNRSNYIHWIE-DLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA  151 (496)
Q Consensus        76 ~~~Vp~g~LiP---rvP~R~nyi~wI~-dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~A  151 (496)
                      .||-+.|-+-|   --|.|..|+..+. ..+.....  ........+|||||||+|.++..|+.  .+.+|+|+|+++++
T Consensus        90 ~WW~~~g~~~~lh~~N~~R~~~i~~~l~~~~~~~~~--~~~~~~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~  165 (322)
T PLN02396         90 TWWHSEGPFKPLHQMNPTRLAFIRSTLCRHFSKDPS--SAKPFEGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKN  165 (322)
T ss_pred             HhcCCCCCchHHHHhChHHHHHHHHHHHHHhccchh--hccCCCCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHH
Confidence            47766665544   2356777765432 22221100  00012345899999999998777763  57899999999999


Q ss_pred             HHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          152 LEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       152 L~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ++.|+++++.++ +..+|+++.++
T Consensus       166 i~~Ar~~~~~~~-~~~~i~~~~~d  188 (322)
T PLN02396        166 VKIARLHADMDP-VTSTIEYLCTT  188 (322)
T ss_pred             HHHHHHHHHhcC-cccceeEEecC
Confidence            999999987764 55678888775

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.86  E-value=6.2e-09  Score=104.48  Aligned_cols=55  Identities=11%  Similarity=0.060  Sum_probs=45.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ..+|||||||+|.+...|+.+.  .+++|+|+|+++++.+++|...     .+++++.+|..
T Consensus        43 ~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~-----~~v~~i~~D~~   97 (272)
T PRK00274         43 GDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAE-----DNLTIIEGDAL   97 (272)
T ss_pred             cCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhcc-----CceEEEEChhh
Confidence            3589999999999998888764  3899999999999999987742     36889888753

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.85  E-value=2.9e-08  Score=97.94  Aligned_cols=60  Identities=8%  Similarity=0.140  Sum_probs=51.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHH--hcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGAS--LLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~--~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.....|+..  .++++++|+|+|+.|++.|++++..++ +..+|+++.+|.
T Consensus        57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~-~~~~v~~~~~d~  118 (247)
T PRK15451         57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK-APTPVDVIEGDI  118 (247)
T ss_pred             CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEeCCh
Confidence            358999999999987777663  478999999999999999999998874 667899987764

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.85  E-value=5.4e-08  Score=103.39  Aligned_cols=88  Identities=17%  Similarity=0.135  Sum_probs=62.9

Q ss_pred             CcEEEecCCCeeCCCCCcHhH---HHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHH
Q 010968           74 GLNWWIPDGQLCPTVPNRSNY---IHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV  150 (496)
Q Consensus        74 GL~~~Vp~g~LiPrvP~R~ny---i~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~  150 (496)
                      |+.|.+.++.....  |+...   +.++.+.+..         ....++||+|||+|.+++.|+..  ..+|+|+|+++.
T Consensus       259 ~~~~~~~~~~F~Q~--N~~~~~~l~~~~~~~l~~---------~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~  325 (431)
T TIGR00479       259 DLSFSLSARDFFQV--NSGQNEKLVDRALEALEL---------QGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPE  325 (431)
T ss_pred             CEEEEECCCceeec--CHHHHHHHHHHHHHHhcc---------CCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHH
Confidence            44566666666553  33333   3333333321         12358999999999999888765  358999999999


Q ss_pred             HHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          151 ALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       151 AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      |++.|++|++.|+ + .+|+++.+|.
T Consensus       326 av~~a~~n~~~~~-~-~nv~~~~~d~  349 (431)
T TIGR00479       326 SVEKAQQNAELNG-I-ANVEFLAGTL  349 (431)
T ss_pred             HHHHHHHHHHHhC-C-CceEEEeCCH
Confidence            9999999999985 6 4689988874

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.83  E-value=4e-08  Score=98.31  Aligned_cols=143  Identities=10%  Similarity=0.067  Sum_probs=92.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|||+|||+|.....++.... ...|+|+|+++.+++.+++|+++++ +. .|+++..|...                
T Consensus        72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g-~~-~v~~~~~D~~~----------------  133 (264)
T TIGR00446        72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG-VL-NVAVTNFDGRV----------------  133 (264)
T ss_pred             cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-CC-cEEEecCCHHH----------------
Confidence            35899999999999888887664 3589999999999999999999985 64 47777665321                


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                           +..   ..+.||.|++|||+....-- .++|.....-+...+ 
T Consensus       134 -------------------------------------~~~---~~~~fD~Vl~D~Pcsg~G~~-~~~p~~~~~~~~~~~-  171 (264)
T TIGR00446       134 -------------------------------------FGA---AVPKFDAILLDAPCSGEGVI-RKDPSRKKNWSEEDI-  171 (264)
T ss_pred             -------------------------------------hhh---hccCCCEEEEcCCCCCCccc-ccChhhhhcCCHHHH-
Confidence                                                 000   12459999999998743221 234544322111100 


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEEEE---EeCCcCcHHHHHHHHHHc
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWYTS---MVGRKSNLKFLISKLRKV  320 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwfts---mvGk~s~l~~L~~~L~~~  320 (496)
                      ..  =...-.+|++.+..+++++|++.+   -+....+-.-+...|++.
T Consensus       172 ~~--l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~  218 (264)
T TIGR00446       172 QE--ISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKR  218 (264)
T ss_pred             HH--HHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhC
Confidence            00  012345689999999989887633   344344444445555554

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.82  E-value=6.7e-08  Score=91.77  Aligned_cols=58  Identities=14%  Similarity=0.133  Sum_probs=50.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ..+|||+|||+|.++..++...++.+++|+|+|+++++.|++|++.++ +. +|+++.+|
T Consensus        41 ~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~-~~-~v~~~~~d   98 (196)
T PRK07402         41 DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG-VK-NVEVIEGS   98 (196)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-CC-CeEEEECc
Confidence            358999999999998888766677899999999999999999999885 53 58888776

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.82  E-value=2.9e-07  Score=91.93  Aligned_cols=61  Identities=18%  Similarity=0.131  Sum_probs=47.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHC-CCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSN-PHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N-~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...|+... +..+|+|+|+|++|++.|+++.... .....+|+++.+|.
T Consensus        74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~  136 (261)
T PLN02233         74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDA  136 (261)
T ss_pred             CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccc
Confidence            4589999999999887777665 4579999999999999998875421 01234688888764

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.82  E-value=5.6e-08  Score=92.79  Aligned_cols=55  Identities=15%  Similarity=0.178  Sum_probs=45.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      +.+|||+|||+|.++..|+.  .+++|+|+|+|+.|++.|+++++.++ +.  +.+...|
T Consensus        31 ~~~vLDiGcG~G~~a~~la~--~g~~V~~iD~s~~~l~~a~~~~~~~~-~~--v~~~~~d   85 (195)
T TIGR00477        31 PCKTLDLGCGQGRNSLYLSL--AGYDVRAWDHNPASIASVLDMKAREN-LP--LRTDAYD   85 (195)
T ss_pred             CCcEEEeCCCCCHHHHHHHH--CCCeEEEEECCHHHHHHHHHHHHHhC-CC--ceeEecc
Confidence            46899999999999888875  36899999999999999999998774 53  5554444

Part of a tellurite-reducing operon tehA and tehB

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.82  E-value=2e-08  Score=102.46  Aligned_cols=58  Identities=14%  Similarity=0.203  Sum_probs=49.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ...|||||||+|.+...|+..  ..+++|+|+|+++++.+++|+..++ +.++++++.+|.
T Consensus        37 ~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~-~~~~v~ii~~Da   94 (294)
T PTZ00338         37 TDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSP-LASKLEVIEGDA   94 (294)
T ss_pred             cCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcC-CCCcEEEEECCH
Confidence            358999999999998777654  4589999999999999999998764 557899998874

>PRK04457 spermidine synthase; Provisional

Probab=98.81  E-value=1.2e-07  Score=95.01  Aligned_cols=75  Identities=15%  Similarity=0.148  Sum_probs=59.2

Q ss_pred             hHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEE
Q 010968           93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIR  172 (496)
Q Consensus        93 nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v  172 (496)
                      .|..++...+...        ..+.+|||||||+|.++..++...|+.+++++|+|+++++.|+++...++ ...+++++
T Consensus        52 ~y~~~m~~~l~~~--------~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~-~~~rv~v~  122 (262)
T PRK04457         52 AYTRAMMGFLLFN--------PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE-NGERFEVI  122 (262)
T ss_pred             HHHHHHHHHHhcC--------CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC-CCCceEEE
Confidence            4777665443321        13458999999999999888888899999999999999999999987653 45689998


Q ss_pred             EccC
Q 010968          173 KVDN  176 (496)
Q Consensus       173 ~~d~  176 (496)
                      .+|.
T Consensus       123 ~~Da  126 (262)
T PRK04457        123 EADG  126 (262)
T ss_pred             ECCH
Confidence            8874

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.78  E-value=7.3e-08  Score=108.78  Aligned_cols=61  Identities=21%  Similarity=0.198  Sum_probs=49.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh----c--------------------------------------CCeeEEecCcHHHHH
Q 010968          116 KVKGFDIGTGANCIYPLLGASL----L--------------------------------------GWSFVGSDMTDVALE  153 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~----~--------------------------------------~~~v~avDIs~~AL~  153 (496)
                      ...++|-+||||-|.+-.+...    |                                      ..+++|+|||++|++
T Consensus       191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~  270 (702)
T PRK11783        191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ  270 (702)
T ss_pred             CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence            4689999999999876654310    1                                      136999999999999


Q ss_pred             HHHHHHHHCCCCCCcEEEEEccCC
Q 010968          154 WAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       154 ~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      .|++|++.++ +.++|+++.+|..
T Consensus       271 ~A~~N~~~~g-~~~~i~~~~~D~~  293 (702)
T PRK11783        271 AARKNARRAG-VAELITFEVKDVA  293 (702)
T ss_pred             HHHHHHHHcC-CCcceEEEeCChh
Confidence            9999999995 8888999988753

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.77  E-value=1.1e-07  Score=92.12  Aligned_cols=151  Identities=11%  Similarity=0.099  Sum_probs=98.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|||||||+|.....++.... ..+|+|+|+++.           ++ +. .|+++++|.....              
T Consensus        52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~-~~-~v~~i~~D~~~~~--------------  104 (209)
T PRK11188         52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DP-IV-GVDFLQGDFRDEL--------------  104 (209)
T ss_pred             CCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cC-CC-CcEEEecCCCChH--------------
Confidence            35899999999999877777653 469999999981           21 22 3788888753200              


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECC-CCccCcccccCCCCcccCCCCCcc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNP-PFFESMEEAGLNPKTSCGGTPEEM  273 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNP-PY~~s~eea~~eP~~al~G~~~Em  273 (496)
                         +      +                       ..+....  ..+.||+|+||+ |++...      |....   ..  
T Consensus       105 ---~------~-----------------------~~i~~~~--~~~~~D~V~S~~~~~~~g~------~~~d~---~~--  139 (209)
T PRK11188        105 ---V------L-----------------------KALLERV--GDSKVQVVMSDMAPNMSGT------PAVDI---PR--  139 (209)
T ss_pred             ---H------H-----------------------HHHHHHh--CCCCCCEEecCCCCccCCC------hHHHH---HH--
Confidence               0      0                       0011111  246799999998 666321      11000   00  


Q ss_pred             cccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecCCCe---eEEEEEEee
Q 010968          274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQT---CRWGLAWSF  344 (496)
Q Consensus       274 v~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t---~Rw~lAWsF  344 (496)
                           -..++..+++++..+++++|+|.+-+-....+..+...+++ .+..++++++.+++.   -.++++-.|
T Consensus       140 -----~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~-~f~~v~~~Kp~ssr~~s~e~~~~~~~~  207 (209)
T PRK11188        140 -----AMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVKVRKPDSSRARSREVYIVATGR  207 (209)
T ss_pred             -----HHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHh-CceEEEEECCccccccCceeEEEeecc
Confidence                 12235678899999999999998755557777777776655 578899999999985   345555433

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.76  E-value=6.3e-08  Score=103.57  Aligned_cols=145  Identities=15%  Similarity=0.136  Sum_probs=98.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|||+|||+|.....++... ++.+|+|+|+++.+++.+++|+++.+ +. .|+++..|...                
T Consensus       238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g-~~-~v~~~~~Da~~----------------  299 (431)
T PRK14903        238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK-LS-SIEIKIADAER----------------  299 (431)
T ss_pred             CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC-CC-eEEEEECchhh----------------
Confidence            3589999999999988888765 35799999999999999999999985 64 48887776321                


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                           +...  ..++||.|+|+||+...... ..+|..-...+...+ 
T Consensus       300 -------------------------------------l~~~--~~~~fD~Vl~DaPCsg~G~~-~~~p~~~~~~~~~~~-  338 (431)
T PRK14903        300 -------------------------------------LTEY--VQDTFDRILVDAPCTSLGTA-RNHPEVLRRVNKEDF-  338 (431)
T ss_pred             -------------------------------------hhhh--hhccCCEEEECCCCCCCccc-cCChHHHHhCCHHHH-
Confidence                                                 0000  13579999999999754332 233433222111100 


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEE---EEEeCCcCcHHHHHHHHHHcC
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVG  321 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwf---tsmvGk~s~l~~L~~~L~~~g  321 (496)
                        .+=..+-.+|++.+..+++++|.+   |+-+....+-..+...|+++.
T Consensus       339 --~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~  386 (431)
T PRK14903        339 --KKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQK  386 (431)
T ss_pred             --HHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCC
Confidence              001235688999999999998876   445555666666777777653

>TIGR00740 methyltransferase, putative

Probab=98.76  E-value=1.8e-07  Score=91.39  Aligned_cols=60  Identities=13%  Similarity=0.139  Sum_probs=50.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.....++..+  |+++++|+|+|+.+++.|+++++..+ ...+++++.+|.
T Consensus        54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~-~~~~v~~~~~d~  115 (239)
T TIGR00740        54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH-SEIPVEILCNDI  115 (239)
T ss_pred             CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEECCh
Confidence            3589999999999888787754  68999999999999999999998763 556788888774

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.72  E-value=2.9e-07  Score=88.42  Aligned_cols=58  Identities=16%  Similarity=0.134  Sum_probs=52.0

Q ss_pred             eEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       118 ~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      +|||||||+|..+..++...++.+++|+|+|+++++.|+++++..+ +.++|+++..|.
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g-l~~~i~~~~~d~   59 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG-LQGRIRIFYRDS   59 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CCcceEEEeccc
Confidence            6999999999988888887778899999999999999999998885 888899988764

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.72  E-value=1.7e-07  Score=100.06  Aligned_cols=147  Identities=14%  Similarity=0.050  Sum_probs=99.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|||+|||+|.....++.... ..+|+|+|+++.+++.+++|+++++ +. .|+++..|....               
T Consensus       253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g-~~-~v~~~~~D~~~~---------------  315 (434)
T PRK14901        253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG-LK-SIKILAADSRNL---------------  315 (434)
T ss_pred             cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC-CC-eEEEEeCChhhc---------------
Confidence            35899999999999888887654 4689999999999999999999985 65 488888774310               


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                               +         ..+ .  ...++||.|+++||...... ..++|.....-....+ 
T Consensus       316 -------------------------~---------~~~-~--~~~~~fD~Vl~DaPCSg~G~-~~r~p~~~~~~~~~~~-  356 (434)
T PRK14901        316 -------------------------L---------ELK-P--QWRGYFDRILLDAPCSGLGT-LHRHPDARWRQTPEKI-  356 (434)
T ss_pred             -------------------------c---------ccc-c--cccccCCEEEEeCCCCcccc-cccCcchhhhCCHHHH-
Confidence                                     0         000 0  01357999999999743211 1234443222111100 


Q ss_pred             ccCch-HHHHHHHHHHHHHhhcCCeEE---EEEeCCcCcHHHHHHHHHHcC
Q 010968          275 CSGGE-RAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVG  321 (496)
Q Consensus       275 ~~GGe-l~FI~riI~eS~~ll~~~gwf---tsmvGk~s~l~~L~~~L~~~g  321 (496)
                         -+ ...-.+|++++..+++++|.+   |+.+....+...+...|++++
T Consensus       357 ---~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~  404 (434)
T PRK14901        357 ---QELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHP  404 (434)
T ss_pred             ---HHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCC
Confidence               01 122467899999988888865   356776778888888888864

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.72  E-value=3.1e-07  Score=86.66  Aligned_cols=150  Identities=11%  Similarity=0.087  Sum_probs=97.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|||||||+|.+...++.+. +..+++|+|+++.+        .    . ..++++..|..+.               
T Consensus        33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~----~-~~i~~~~~d~~~~---------------   84 (188)
T TIGR00438        33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P----I-ENVDFIRGDFTDE---------------   84 (188)
T ss_pred             CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c----C-CCceEEEeeCCCh---------------
Confidence            4589999999999988887766 45789999999854        1    1 1366666664310               


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECC--CCccCcccccCCCCcccCCCCCc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNP--PFFESMEEAGLNPKTSCGGTPEE  272 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNP--PY~~s~eea~~eP~~al~G~~~E  272 (496)
                                              ...+       .+....  ..++||+|+||+  ||...       +...   ... 
T Consensus        85 ------------------------~~~~-------~l~~~~--~~~~~D~V~~~~~~~~~g~-------~~~~---~~~-  120 (188)
T TIGR00438        85 ------------------------EVLN-------KIRERV--GDDKVDVVMSDAAPNISGY-------WDID---HLR-  120 (188)
T ss_pred             ------------------------hHHH-------HHHHHh--CCCCccEEEcCCCCCCCCC-------cccc---HHH-
Confidence                                    0000       000001  245799999995  33110       0000   000 


Q ss_pred             ccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecCCCe---eEEEEEEee
Q 010968          273 MVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQT---CRWGLAWSF  344 (496)
Q Consensus       273 mv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t---~Rw~lAWsF  344 (496)
                            .......++..+..+++++|.+..++....++..+...+++. +..+.+.++..|+.   .+++++-.|
T Consensus       121 ------~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (188)
T TIGR00438       121 ------SIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKL-FEKVKVTKPQASRKRSAEVYIVAKRF  188 (188)
T ss_pred             ------HHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhh-hceEEEeCCCCCCcccceEEEEEecC
Confidence                  123356778888888899998888777677888888888875 77899999999974   566666443

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.71  E-value=3.4e-08  Score=91.67  Aligned_cols=58  Identities=24%  Similarity=0.251  Sum_probs=46.3

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ++.+++|||||+|.+.  .+..+++ -.++|+||+|+||+++.+|++..   +-+|.+++.+..
T Consensus        48 Egkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEf---EvqidlLqcdil  106 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEF---EVQIDLLQCDIL  106 (185)
T ss_pred             cCcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHh---hhhhheeeeecc
Confidence            4568999999999885  5555665 57999999999999999999875   334677777654

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.70  E-value=4.5e-07  Score=91.57  Aligned_cols=55  Identities=22%  Similarity=0.288  Sum_probs=46.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      +.++||||||+|..+..|+.  .+++|+|+|+|+.|++.|++|++.++ +  .+++...|
T Consensus       121 ~~~vLDlGcG~G~~~~~la~--~g~~V~avD~s~~ai~~~~~~~~~~~-l--~v~~~~~D  175 (287)
T PRK12335        121 PGKALDLGCGQGRNSLYLAL--LGFDVTAVDINQQSLENLQEIAEKEN-L--NIRTGLYD  175 (287)
T ss_pred             CCCEEEeCCCCCHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHcC-C--ceEEEEec
Confidence            34899999999998877765  36899999999999999999999875 5  47766655

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.70  E-value=3.6e-08  Score=97.18  Aligned_cols=61  Identities=15%  Similarity=0.095  Sum_probs=53.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ..++||||||+|+.++.++...+ +.+++++|+++++++.|++|++.++ +.++|+++.+|..
T Consensus        69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g-l~~~i~~~~gda~  130 (234)
T PLN02781         69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG-VDHKINFIQSDAL  130 (234)
T ss_pred             CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEccHH
Confidence            45899999999998888887765 5799999999999999999999995 8899999998753

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.69  E-value=1.3e-07  Score=93.25  Aligned_cols=42  Identities=17%  Similarity=0.162  Sum_probs=38.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHH
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK  157 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~  157 (496)
                      ..+|||||||+|.+...|+...|+.+|+|+|+|+.+++.|++
T Consensus        30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~   71 (255)
T PRK14103         30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE   71 (255)
T ss_pred             CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh
Confidence            468999999999999888888888999999999999999965

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.69  E-value=2.2e-07  Score=99.56  Aligned_cols=143  Identities=14%  Similarity=0.079  Sum_probs=96.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|||+|||+|..+..++.... ..+|+|+|+++.+++.|++|+++++ +. .|+++.+|...                
T Consensus       251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g-~~-~v~~~~~Da~~----------------  312 (445)
T PRK14904        251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG-IT-IIETIEGDARS----------------  312 (445)
T ss_pred             CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC-CC-eEEEEeCcccc----------------
Confidence            35899999999998877776554 4699999999999999999999985 64 58888776321                


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                          +.     ..+.||.|+++||+..+..- .++|......+.. .+
T Consensus       313 ------------------------------------~~-----~~~~fD~Vl~D~Pcsg~g~~-~r~p~~~~~~~~~-~~  349 (445)
T PRK14904        313 ------------------------------------FS-----PEEQPDAILLDAPCTGTGVL-GRRAELRWKLTPE-KL  349 (445)
T ss_pred             ------------------------------------cc-----cCCCCCEEEEcCCCCCcchh-hcCcchhhcCCHH-HH
Confidence                                                10     13579999999998654332 2345443322221 00


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEE---EEEeCCcCcHHHHHHHHHHcC
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVG  321 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwf---tsmvGk~s~l~~L~~~L~~~g  321 (496)
                      ..  =...-.+|+..+..+++++|.+   |+-+.+..+-..+...|++++
T Consensus       350 ~~--l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~  397 (445)
T PRK14904        350 AE--LVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHP  397 (445)
T ss_pred             HH--HHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCC
Confidence            00  0123457899999998998876   334444456556667777653

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.68  E-value=5.7e-07  Score=95.25  Aligned_cols=59  Identities=15%  Similarity=0.134  Sum_probs=53.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ...+||||||+|.....+|.+.|++.++|+|+++.+++.|.+++..++ +. .|.++.+|.
T Consensus       123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g-L~-NV~~i~~DA  181 (390)
T PRK14121        123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN-LK-NLLIINYDA  181 (390)
T ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC-CC-cEEEEECCH
Confidence            458999999999999999999999999999999999999999999885 75 499988874

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.68  E-value=2.2e-07  Score=88.88  Aligned_cols=56  Identities=20%  Similarity=0.252  Sum_probs=46.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      +.+|||+|||+|..+..|+.+  +++|+|+|+|+.|++.|+++++.++ +. .|+++..|
T Consensus        31 ~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~-~~-~v~~~~~d   86 (197)
T PRK11207         31 PGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAEN-LD-NLHTAVVD   86 (197)
T ss_pred             CCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcC-CC-cceEEecC
Confidence            358999999999998888754  6899999999999999999998874 53 46666665

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.67  E-value=1.4e-07  Score=97.20  Aligned_cols=81  Identities=19%  Similarity=0.092  Sum_probs=57.4

Q ss_pred             cCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHH
Q 010968           73 HGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL  152 (496)
Q Consensus        73 fGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL  152 (496)
                      ||....+...++.++ +++...+..+.+.+....      +..+.+|||||||+|.++..|+..  +++|+|+|+|+.++
T Consensus       109 y~~~d~v~~~~l~~~-~~~~~~v~~~l~~l~~~~------~~~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml  179 (315)
T PLN02585        109 YGETDEVNKVQLDIR-LGHAQTVEKVLLWLAEDG------SLAGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMV  179 (315)
T ss_pred             cCCccccCceeeecc-cChHHHHHHHHHHHHhcC------CCCCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHH
Confidence            333445666678887 555455555555543210      013468999999999998888753  68999999999999


Q ss_pred             HHHHHHHHHC
Q 010968          153 EWAEKNVKSN  162 (496)
Q Consensus       153 ~~A~~N~~~N  162 (496)
                      +.|++|++..
T Consensus       180 ~~A~~~~~~~  189 (315)
T PLN02585        180 AEAERRAKEA  189 (315)
T ss_pred             HHHHHHHHhc
Confidence            9999998754

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.67  E-value=8.5e-07  Score=85.22  Aligned_cols=140  Identities=18%  Similarity=0.160  Sum_probs=97.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ...++|||||||.|++-++...|..+++|+|-++++++..++|+++.+ + ++++++.++...                 
T Consensus        35 g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-~-~n~~vv~g~Ap~-----------------   95 (187)
T COG2242          35 GDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG-V-DNLEVVEGDAPE-----------------   95 (187)
T ss_pred             CCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-C-CcEEEEeccchH-----------------
Confidence            358999999999999999977889999999999999999999999995 4 579998886321                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         .|.++    .+||.+                    |-        
T Consensus        96 -----------------------------------~L~~~----~~~dai--------------------FI--------  108 (187)
T COG2242          96 -----------------------------------ALPDL----PSPDAI--------------------FI--------  108 (187)
T ss_pred             -----------------------------------hhcCC----CCCCEE--------------------EE--------
Confidence                                               12110    123333                    21        


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecCCCeeEEEEEEe
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWS  343 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t~Rw~lAWs  343 (496)
                       ||+ .=+..|++.+...++++|-+..-.-...++..+.+.+++.|+.++....-..|+...-.-+|.
T Consensus       109 -GGg-~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~~v~is~~~~lg~~~~~~  174 (187)
T COG2242         109 -GGG-GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGREIVQVQISRGKPLGGGTMFR  174 (187)
T ss_pred             -CCC-CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEEEEEeecceeccCeeEee
Confidence             122 227888899888888888765555556677788889999998423333334444333223444

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.66  E-value=8.4e-07  Score=84.82  Aligned_cols=60  Identities=18%  Similarity=0.185  Sum_probs=50.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.....++...+ ..+++++|+++.+++.|++++..++ +..++.++..|.
T Consensus        52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~  112 (239)
T PRK00216         52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG-LSGNVEFVQGDA  112 (239)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc-cccCeEEEeccc
Confidence            35899999999999888877776 6899999999999999999998763 566788877763

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.66  E-value=4.2e-07  Score=72.75  Aligned_cols=56  Identities=29%  Similarity=0.402  Sum_probs=44.0

Q ss_pred             eEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       118 ~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      +++|+|||.|.+...++. .+..+++++|+++.+++.++++...+  ...+++++..|.
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~   56 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAAL--LADNVEVLKGDA   56 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcc--cccceEEEEcCh
Confidence            489999999998776665 56789999999999999999755443  345688877664

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.65  E-value=2.3e-07  Score=89.58  Aligned_cols=59  Identities=19%  Similarity=0.161  Sum_probs=50.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..++||||||+|.++..|+.... +.+|+++|+++++++.|++|++.++ + ++++++.+|.
T Consensus        78 ~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g-~-~~v~~~~~d~  137 (215)
T TIGR00080        78 GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG-L-DNVIVIVGDG  137 (215)
T ss_pred             cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC-C-CCeEEEECCc
Confidence            45899999999999988877654 4579999999999999999999985 6 4688888764

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.64  E-value=1.5e-07  Score=102.54  Aligned_cols=49  Identities=18%  Similarity=0.063  Sum_probs=41.3

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhc--------CCeeEEecCcHHHHHHHHHHHHHCC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLL--------GWSFVGSDMTDVALEWAEKNVKSNP  163 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~--------~~~v~avDIs~~AL~~A~~N~~~N~  163 (496)
                      ...+|||.|||+|++.+.++.+.+        ...++|+|||+.++..|+.|+...+
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~   87 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA   87 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence            356899999999999888776653        2578999999999999999998763

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PRK06922 hypothetical protein; Provisional

Probab=98.63  E-value=3.2e-07  Score=102.24  Aligned_cols=120  Identities=12%  Similarity=0.136  Sum_probs=83.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      +.+|||||||+|.....|+...|+.+++|+|+|+.|++.|+++...++   .++.++.+|..+ .               
T Consensus       419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g---~~ie~I~gDa~d-L---------------  479 (677)
T PRK06922        419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG---RSWNVIKGDAIN-L---------------  479 (677)
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CCeEEEEcchHh-C---------------
Confidence            458999999999988888888899999999999999999999986553   357777776321 0               


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                              +         ..+     ++++||+|+||+++..-..   +-|   ..+...    
T Consensus       480 ------------------------p---------~~f-----edeSFDvVVsn~vLH~L~s---yIp---~~g~~f----  511 (677)
T PRK06922        480 ------------------------S---------SSF-----EKESVDTIVYSSILHELFS---YIE---YEGKKF----  511 (677)
T ss_pred             ------------------------c---------ccc-----CCCCEEEEEEchHHHhhhh---hcc---cccccc----
Confidence                                    0         001     2457999999998753111   001   001110    


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeC
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVG  305 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvG  305 (496)
                         ...-+.+++++....++++|++...-+
T Consensus       512 ---~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        512 ---NHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             ---cHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence               123467788888888999999876544

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.62  E-value=1.9e-07  Score=90.33  Aligned_cols=44  Identities=16%  Similarity=0.134  Sum_probs=39.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHH
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNV  159 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~  159 (496)
                      ..+|||||||+|.+...|+...++.+++|+|+|++|++.|+++.
T Consensus        44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~   87 (204)
T TIGR03587        44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL   87 (204)
T ss_pred             CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC
Confidence            45799999999999888877667889999999999999998874

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.61  E-value=1.7e-06  Score=86.52  Aligned_cols=56  Identities=21%  Similarity=0.255  Sum_probs=45.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|..+..|+.. .+++|+|+|+++.+++.|+++....    .+|.++..|.
T Consensus        53 ~~~VLDiGcG~G~~a~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~----~~i~~~~~D~  108 (263)
T PTZ00098         53 NSKVLDIGSGLGGGCKYINEK-YGAHVHGVDICEKMVNIAKLRNSDK----NKIEFEANDI  108 (263)
T ss_pred             CCEEEEEcCCCChhhHHHHhh-cCCEEEEEECCHHHHHHHHHHcCcC----CceEEEECCc
Confidence            458999999999887777654 4789999999999999999986532    4688877763

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.61  E-value=4.1e-07  Score=92.11  Aligned_cols=59  Identities=17%  Similarity=0.112  Sum_probs=42.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHH-------hcCCeeEEecCcHHHHHHHHHHHHHCCCCCCc-EEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGAS-------LLGWSFVGSDMTDVALEWAEKNVKSNPHISEL-IEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~-------~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~r-I~~v~~d  175 (496)
                      ..+|+|-+||+|.+...+...       ....+++|+|+++.++.+|+.|+..++ .... +.+..+|
T Consensus        47 ~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~-~~~~~~~i~~~d  113 (311)
T PF02384_consen   47 GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG-IDNSNINIIQGD  113 (311)
T ss_dssp             TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT-HHCBGCEEEES-
T ss_pred             cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc-cccccccccccc
Confidence            457999999999886665543       357899999999999999999997764 4332 3455555

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.61  E-value=9e-08  Score=100.10  Aligned_cols=56  Identities=13%  Similarity=0.205  Sum_probs=48.7

Q ss_pred             CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      .++||++||+|.+++.|+...  .+|+|+|+++.|++.|++|++.|+ ++ +++++.+|.
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~-~~-~v~~~~~d~  263 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANG-ID-NVQIIRMSA  263 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhC-CC-cEEEEECCH
Confidence            369999999999999887653  489999999999999999999995 64 799988874

>PRK00811 spermidine synthase; Provisional

Probab=98.60  E-value=2.5e-06  Score=86.42  Aligned_cols=62  Identities=11%  Similarity=0.009  Sum_probs=48.0

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC-CC--CCcEEEEEccC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP-HI--SELIEIRKVDN  176 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~-~L--~~rI~~v~~d~  176 (496)
                      ++.+|||||||.|.++..+++.....+|+++|||+++++.|+++....+ +.  +.+++++.+|.
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da  140 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDG  140 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECch
Confidence            3568999999999998777654344689999999999999999886421 11  45788888874

>PRK08317 hypothetical protein; Provisional

Probab=98.60  E-value=3.1e-06  Score=80.37  Aligned_cols=72  Identities=19%  Similarity=0.214  Sum_probs=53.4

Q ss_pred             HhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEE
Q 010968           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIE  170 (496)
Q Consensus        92 ~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~  170 (496)
                      ..|..++.+.+..         ....+|||+|||+|.+...++... +..+++|+|+++.+++.|+++...   ....+.
T Consensus         5 ~~~~~~~~~~~~~---------~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~---~~~~~~   72 (241)
T PRK08317          5 RRYRARTFELLAV---------QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG---LGPNVE   72 (241)
T ss_pred             HHHHHHHHHHcCC---------CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC---CCCceE
Confidence            4455555555432         134589999999999988888776 568999999999999999998433   234677


Q ss_pred             EEEcc
Q 010968          171 IRKVD  175 (496)
Q Consensus       171 ~v~~d  175 (496)
                      ++..|
T Consensus        73 ~~~~d   77 (241)
T PRK08317         73 FVRGD   77 (241)
T ss_pred             EEecc
Confidence            77665

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.58  E-value=1.8e-07  Score=97.69  Aligned_cols=55  Identities=13%  Similarity=0.235  Sum_probs=48.5

Q ss_pred             eEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       118 ~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ++||+|||+|.+++.|+...  .+|+|+|++++|++.|++|++.|+ ++ +++++.+|.
T Consensus       200 ~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~-~~-~v~~~~~d~  254 (353)
T TIGR02143       200 DLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANN-ID-NVQIIRMSA  254 (353)
T ss_pred             cEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcC-CC-cEEEEEcCH
Confidence            69999999999999887664  389999999999999999999995 75 599988874

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.58  E-value=1.5e-06  Score=88.25  Aligned_cols=60  Identities=15%  Similarity=0.107  Sum_probs=54.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ..++||||||+|.++..++.+.|+.+++++|+ +.+++.|++|++..+ +.++|+++.+|..
T Consensus       150 ~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~g-l~~rv~~~~~d~~  209 (306)
T TIGR02716       150 VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG-VADRMRGIAVDIY  209 (306)
T ss_pred             CCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCC-ccceEEEEecCcc
Confidence            45899999999999999999999999999998 789999999999985 8889999988743

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.58  E-value=1.6e-07  Score=89.64  Aligned_cols=89  Identities=19%  Similarity=0.208  Sum_probs=57.5

Q ss_pred             cCcEEEecCC-CeeCCCCCc--HhHHHHHHHH-hccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCc
Q 010968           73 HGLNWWIPDG-QLCPTVPNR--SNYIHWIEDL-LSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT  148 (496)
Q Consensus        73 fGL~~~Vp~g-~LiPrvP~R--~nyi~wI~dl-L~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs  148 (496)
                      =|..+..|++ .+=|| ++|  +...-|+... +            ...++||+.+|||++++-.+.+ .-.+|+.||.|
T Consensus         9 kgr~l~~p~~~~~RPT-~drvrealFniL~~~~~------------~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~   74 (183)
T PF03602_consen    9 KGRKLKTPKGDNTRPT-TDRVREALFNILQPRNL------------EGARVLDLFAGSGALGLEALSR-GAKSVVFVEKN   74 (183)
T ss_dssp             TT-EEE-TT--TS-SS-SHHHHHHHHHHHHCH-H------------TT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-
T ss_pred             CCCEecCCCCCCcCCC-cHHHHHHHHHHhccccc------------CCCeEEEcCCccCccHHHHHhc-CCCeEEEEECC
Confidence            3566777775 33444 322  3334444433 2            2468999999999998875543 33589999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          149 DVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       149 ~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      +++++..++|++..+ +.++++++..|.
T Consensus        75 ~~a~~~i~~N~~~l~-~~~~~~v~~~d~  101 (183)
T PF03602_consen   75 RKAIKIIKKNLEKLG-LEDKIRVIKGDA  101 (183)
T ss_dssp             HHHHHHHHHHHHHHT--GGGEEEEESSH
T ss_pred             HHHHHHHHHHHHHhC-CCcceeeeccCH
Confidence            999999999999885 777899888873

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.58  E-value=1.2e-07  Score=80.40  Aligned_cols=55  Identities=20%  Similarity=0.298  Sum_probs=43.3

Q ss_pred             EEEEcCchhHHHHHHHHHh---cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          119 GFDIGTGANCIYPLLGASL---LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       119 vLDIGTGSG~I~ilLa~~~---~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      |||+|||+|.....++..+   +..+++|+|+|+++++.|+++....+ .  +++++.+|.
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~-~--~~~~~~~D~   58 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG-P--KVRFVQADA   58 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT-T--TSEEEESCT
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC-C--ceEEEECCH
Confidence            7999999999988887765   35899999999999999999998753 4  688888875

>PRK03612 spermidine synthase; Provisional

Probab=98.56  E-value=2.9e-07  Score=100.74  Aligned_cols=136  Identities=12%  Similarity=0.032  Sum_probs=88.5

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHH---CC-CC-CCcEEEEEccCCCCCCccccccc
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKS---NP-HI-SELIEIRKVDNSESTPSIQESLT  188 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~N~~~---N~-~L-~~rI~~v~~d~~~~~p~~~~~~~  188 (496)
                      ++.+|||||||+|.+...+++ .+. .+++++|||+++++.|++|...   |+ .+ +.+++++..|...          
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~----------  365 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN----------  365 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH----------
Confidence            356899999999998777664 455 6999999999999999996421   10 12 2478888776321          


Q ss_pred             CCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCC
Q 010968          189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGG  268 (496)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G  268 (496)
                                                                .+..   ..++||+|++|+|.-..       |..    
T Consensus       366 ------------------------------------------~l~~---~~~~fDvIi~D~~~~~~-------~~~----  389 (521)
T PRK03612        366 ------------------------------------------WLRK---LAEKFDVIIVDLPDPSN-------PAL----  389 (521)
T ss_pred             ------------------------------------------HHHh---CCCCCCEEEEeCCCCCC-------cch----
Confidence                                                      1111   23589999999875321       100    


Q ss_pred             CCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeC----CcCcHHHHHHHHHHcCCeeEEEE
Q 010968          269 TPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVG----RKSNLKFLISKLRKVGVTIVKTT  328 (496)
Q Consensus       269 ~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvG----k~s~l~~L~~~L~~~g~~~vk~~  328 (496)
                        .        .-|-..+++...+.++++|.+....+    ....+..+.+.+++.|+ .+...
T Consensus       390 --~--------~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf-~v~~~  442 (521)
T PRK03612        390 --G--------KLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL-ATTPY  442 (521)
T ss_pred             --h--------ccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC-EEEEE
Confidence              0        01113344455567888998876432    24456678889999998 45443

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.54  E-value=5.1e-07  Score=88.80  Aligned_cols=53  Identities=19%  Similarity=0.129  Sum_probs=44.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ..+|||||||+|.+...++...++.+++|+|+|+.+++.|+++..       ++.++.+|
T Consensus        32 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-------~~~~~~~d   84 (258)
T PRK01683         32 PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-------DCQFVEAD   84 (258)
T ss_pred             CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-------CCeEEECc
Confidence            468999999999998888888888999999999999999988742       36666665

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.52  E-value=1.3e-06  Score=85.72  Aligned_cols=42  Identities=17%  Similarity=0.156  Sum_probs=35.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHH
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNV  159 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~  159 (496)
                      ..+|||||||+|.+...|+.  .+.+++|+|+|+.+++.|+++.
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~~D~s~~~l~~a~~~~   84 (251)
T PRK10258         43 FTHVLDAGCGPGWMSRYWRE--RGSQVTALDLSPPMLAQARQKD   84 (251)
T ss_pred             CCeEEEeeCCCCHHHHHHHH--cCCeEEEEECCHHHHHHHHhhC
Confidence            45899999999988766654  4689999999999999998875

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.50  E-value=1e-05  Score=76.51  Aligned_cols=57  Identities=25%  Similarity=0.233  Sum_probs=46.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||+|||+|.+...++...+. .+++++|+++.+++.++++..    ...++.++.+|.
T Consensus        40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~----~~~~i~~~~~d~   97 (223)
T TIGR01934        40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE----LPLNIEFIQADA   97 (223)
T ss_pred             CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc----cCCCceEEecch
Confidence            468999999999988888777765 799999999999999999875    224677777653

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.46  E-value=2.4e-07  Score=92.04  Aligned_cols=65  Identities=23%  Similarity=0.296  Sum_probs=50.1

Q ss_pred             CCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC
Q 010968           88 VPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP  163 (496)
Q Consensus        88 vP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~  163 (496)
                      .|.|++||.-....--         +-...+|||+|||-|.++..+|+.  +.+|+|+|++++++++|+.-+..++
T Consensus        41 N~~rl~~i~~~~~~~~---------~l~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~g  105 (243)
T COG2227          41 NPLRLDYIREVARLRF---------DLPGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESG  105 (243)
T ss_pred             ccchhhhhhhhhhccc---------CCCCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhcc
Confidence            3668888854332100         013578999999999888888754  6999999999999999999998885

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.45  E-value=6.1e-07  Score=88.93  Aligned_cols=55  Identities=16%  Similarity=0.090  Sum_probs=45.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...|+.+.  ..++|+|+|+++++.++++....    .+++++.+|.
T Consensus        30 ~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~~----~~v~v~~~D~   84 (253)
T TIGR00755        30 GDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSLY----ERLEVIEGDA   84 (253)
T ss_pred             cCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCcC----CcEEEEECch
Confidence            4589999999999988887765  35999999999999999887432    4688888874

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.45  E-value=2e-06  Score=82.61  Aligned_cols=72  Identities=15%  Similarity=0.181  Sum_probs=54.0

Q ss_pred             HhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 010968           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI  171 (496)
Q Consensus        92 ~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~  171 (496)
                      .....++.+++..         ....+|||||||+|.....|+...  .+++++|+++++++.|++|++.++ +. .+++
T Consensus        64 p~~~~~l~~~l~~---------~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~-~~-~v~~  130 (212)
T PRK00312         64 PYMVARMTELLEL---------KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLG-LH-NVSV  130 (212)
T ss_pred             HHHHHHHHHhcCC---------CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCC-CC-ceEE
Confidence            3445566555542         134689999999999877666543  489999999999999999999885 64 3888


Q ss_pred             EEccC
Q 010968          172 RKVDN  176 (496)
Q Consensus       172 v~~d~  176 (496)
                      +.+|.
T Consensus       131 ~~~d~  135 (212)
T PRK00312        131 RHGDG  135 (212)
T ss_pred             EECCc
Confidence            87763

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.45  E-value=7.4e-06  Score=79.28  Aligned_cols=55  Identities=18%  Similarity=0.294  Sum_probs=44.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ..+|||||||+|.++..++..  +.+++++|+++.+++.|++|+..++ +  .++++..+
T Consensus        49 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~-~--~~~~~~~~  103 (233)
T PRK05134         49 GKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESG-L--KIDYRQTT  103 (233)
T ss_pred             CCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcC-C--ceEEEecC
Confidence            458999999999988777653  5789999999999999999998764 3  46666554

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.44  E-value=4.4e-06  Score=78.93  Aligned_cols=148  Identities=14%  Similarity=0.146  Sum_probs=82.4

Q ss_pred             eEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccc
Q 010968          118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESN  197 (496)
Q Consensus       118 ~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~  197 (496)
                      .|+|++||.|.-.+.+|..+  .+|+|+|+|+.-+++|+.|++-.+ ++++|+++.+|..+                   
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYG-v~~~I~~i~gD~~~-------------------   59 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYG-VADNIDFICGDFFE-------------------   59 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT--GGGEEEEES-HHH-------------------
T ss_pred             EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEeCCHHH-------------------
Confidence            58999999999988888763  479999999999999999999995 89999999998431                   


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccccC
Q 010968          198 MDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSG  277 (496)
Q Consensus       198 ~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~G  277 (496)
                                                       ++... +....||+|++.||+--..-..  .+...+.   . ...+-
T Consensus        60 ---------------------------------~~~~~-~~~~~~D~vFlSPPWGGp~Y~~--~~~fdL~---~-~~~p~   99 (163)
T PF09445_consen   60 ---------------------------------LLKRL-KSNKIFDVVFLSPPWGGPSYSK--KDVFDLE---K-SMQPF   99 (163)
T ss_dssp             ---------------------------------HGGGB-------SEEEE---BSSGGGGG--SSSB-TT---T-SSSS-
T ss_pred             ---------------------------------HHhhc-cccccccEEEECCCCCCccccc--cCccCHH---H-ccCCC
Confidence                                             11111 0112289999999996432211  1111110   0 11111


Q ss_pred             chHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcC--CeeEEEEEe-cCCC
Q 010968          278 GERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVG--VTIVKTTEF-VQGQ  334 (496)
Q Consensus       278 Gel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g--~~~vk~~ed-~qG~  334 (496)
                      +    +..|++.+..+-..+.   ..+.|.+.+.+|.+..++..  -..+++.+- +.|+
T Consensus       100 ~----~~~l~~~~~~~t~nv~---l~LPRn~dl~ql~~~~~~l~~~~~~~~v~~~~~n~~  152 (163)
T PF09445_consen  100 N----LEDLLKAARKITPNVV---LFLPRNSDLNQLSQLTRELFGPSKKCEVEQNYLNGK  152 (163)
T ss_dssp             -----HHHHHHHHHHH-S-EE---EEEETTB-HHHHHHT----T-TTEEEEEEEEEETTE
T ss_pred             C----HHHHHHHHHhhCCCEE---EEeCCCCCHHHHHHHhccccCCCCeEEEEEehcCCe
Confidence            1    4556666666644444   45888899999988865542  233454443 3444

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.43  E-value=2.9e-06  Score=80.80  Aligned_cols=55  Identities=20%  Similarity=0.221  Sum_probs=45.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      +.+|||||||+|.....++...+..+++++|+++.+++.|+++..      .++.++.+|.
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~------~~~~~~~~d~   89 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS------ENVQFICGDA   89 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC------CCCeEEecch
Confidence            468999999999998888888888899999999999999987653      2466766653

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK04266 fibrillarin; Provisional

Probab=98.43  E-value=6.1e-06  Score=81.36  Aligned_cols=57  Identities=7%  Similarity=-0.043  Sum_probs=46.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||+|||+|.+...|+...+..+|+|+|+++.+++.+.++++..    .+|.++.+|.
T Consensus        73 g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~----~nv~~i~~D~  129 (226)
T PRK04266         73 GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER----KNIIPILADA  129 (226)
T ss_pred             CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc----CCcEEEECCC
Confidence            35899999999999888877665568999999999999888887653    2477777764

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=98.42  E-value=8.1e-07  Score=87.87  Aligned_cols=59  Identities=24%  Similarity=0.256  Sum_probs=44.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      +.+|||+|||+|-+...|+... ++.+|+|+|+|+.+|+.|++.++..+ .. +|+++.+|.
T Consensus        48 g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~-~~-~i~~v~~da  107 (233)
T PF01209_consen   48 GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG-LQ-NIEFVQGDA  107 (233)
T ss_dssp             --EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT----SEEEEE-BT
T ss_pred             CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC-CC-CeeEEEcCH
Confidence            4589999999999988887664 46899999999999999999998874 43 799999874

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.42  E-value=9.9e-07  Score=71.74  Aligned_cols=51  Identities=31%  Similarity=0.436  Sum_probs=41.1

Q ss_pred             EEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          120 FDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       120 LDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ||||||+|-....|+.. ++.+++|+|+++++++.|+++....+     +.++..|.
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~-----~~~~~~d~   51 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEG-----VSFRQGDA   51 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTST-----EEEEESBT
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccC-----chheeehH
Confidence            79999999988888776 78999999999999999999886543     55776663

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK06202 hypothetical protein; Provisional

Probab=98.41  E-value=5.9e-07  Score=87.37  Aligned_cols=48  Identities=21%  Similarity=0.181  Sum_probs=39.6

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHh----cCCeeEEecCcHHHHHHHHHHHHHC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASL----LGWSFVGSDMTDVALEWAEKNVKSN  162 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~----~~~~v~avDIs~~AL~~A~~N~~~N  162 (496)
                      ...+|||||||+|.+...|+...    ++++++|+|+++++++.|+++...+
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~  111 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP  111 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC
Confidence            34689999999999877776532    4579999999999999999887544

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=98.41  E-value=8.3e-07  Score=88.39  Aligned_cols=59  Identities=25%  Similarity=0.295  Sum_probs=52.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      +.++||+|||||-++..++...+..+|+|+|+|+.||+.|++-+..-+ ..+ |+++.+|.
T Consensus        52 g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~-~~~-i~fv~~dA  110 (238)
T COG2226          52 GDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKG-VQN-VEFVVGDA  110 (238)
T ss_pred             CCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccC-ccc-eEEEEech
Confidence            568999999999999999988888899999999999999999988653 555 99999874

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.41  E-value=3.3e-06  Score=81.85  Aligned_cols=59  Identities=20%  Similarity=0.162  Sum_probs=49.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...++.... +.+|+++|+++++++.|++|++.++ + ++|+++.+|.
T Consensus        77 g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g-~-~~v~~~~gd~  136 (212)
T PRK13942         77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG-Y-DNVEVIVGDG  136 (212)
T ss_pred             cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-C-CCeEEEECCc
Confidence            35899999999999888776643 4699999999999999999999874 5 4689888874

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.41  E-value=6e-06  Score=79.24  Aligned_cols=57  Identities=21%  Similarity=0.243  Sum_probs=47.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ..+|||||||+|.++..|+..  +..++|+|+|+.+++.|+++....+ +.++|.++.+|
T Consensus        64 ~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~-~~~~i~~~~~d  120 (230)
T PRK07580         64 GLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAG-LAGNITFEVGD  120 (230)
T ss_pred             CCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcC-CccCcEEEEcC
Confidence            358999999999988777654  4679999999999999999998774 55678887665

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.39  E-value=1e-06  Score=84.84  Aligned_cols=58  Identities=16%  Similarity=0.213  Sum_probs=48.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..++||||||+|.+...++..  +.+++|+|+|+++++.|++++..++ ..+++++...|.
T Consensus        56 ~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~-~~~~i~~~~~d~  113 (219)
T TIGR02021        56 GKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRD-VAGNVEFEVNDL  113 (219)
T ss_pred             CCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECCh
Confidence            468999999999988777653  5799999999999999999998774 555788877653

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.39  E-value=5.3e-07  Score=95.29  Aligned_cols=57  Identities=14%  Similarity=-0.030  Sum_probs=48.7

Q ss_pred             CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      .++||++||+|.+++.++.+....+|+++|+|+.|++.|++|++.|+ ++ .++++..|
T Consensus        59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~-~~-~~~v~~~D  115 (382)
T PRK04338         59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG-LE-NEKVFNKD  115 (382)
T ss_pred             CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-CC-ceEEEhhh
Confidence            47999999999999999887665589999999999999999999995 65 35666665

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.38  E-value=4e-06  Score=88.63  Aligned_cols=54  Identities=24%  Similarity=0.343  Sum_probs=43.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ..+|||||||+|.++..++.. .+++|+|+|+|+++++.|+++++.   +  .+++...|
T Consensus       168 g~rVLDIGcG~G~~a~~la~~-~g~~V~giDlS~~~l~~A~~~~~~---l--~v~~~~~D  221 (383)
T PRK11705        168 GMRVLDIGCGWGGLARYAAEH-YGVSVVGVTISAEQQKLAQERCAG---L--PVEIRLQD  221 (383)
T ss_pred             CCEEEEeCCCccHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhcc---C--eEEEEECc
Confidence            358999999999998777654 478999999999999999999852   3  26665554

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.36  E-value=1.8e-06  Score=91.63  Aligned_cols=132  Identities=19%  Similarity=0.226  Sum_probs=92.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCC-eeEEecCcHHHHHHHHHHHHHCCCC-CCcEEEEEccCCCCCCcccccccCCccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVKSNPHI-SELIEIRKVDNSESTPSIQESLTGKSVQ  193 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~-~v~avDIs~~AL~~A~~N~~~N~~L-~~rI~~v~~d~~~~~p~~~~~~~~~~~~  193 (496)
                      ..+|||+.|=||..+  +.+...++ +|+.||+|..||++|++|++.|+ + .+++.++..|...               
T Consensus       218 GkrvLNlFsYTGgfS--v~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg-~~~~~~~~i~~Dvf~---------------  279 (393)
T COG1092         218 GKRVLNLFSYTGGFS--VHAALGGASEVTSVDLSKRALEWARENAELNG-LDGDRHRFIVGDVFK---------------  279 (393)
T ss_pred             CCeEEEecccCcHHH--HHHHhcCCCceEEEeccHHHHHHHHHHHHhcC-CCccceeeehhhHHH---------------
Confidence            457999999999774  44445676 99999999999999999999996 6 4678999887542               


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcc
Q 010968          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (496)
Q Consensus       194 ~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Em  273 (496)
                                                           ++....+.+++||+|+..||=|......      ...      
T Consensus       280 -------------------------------------~l~~~~~~g~~fDlIilDPPsF~r~k~~------~~~------  310 (393)
T COG1092         280 -------------------------------------WLRKAERRGEKFDLIILDPPSFARSKKQ------EFS------  310 (393)
T ss_pred             -------------------------------------HHHHHHhcCCcccEEEECCcccccCccc------chh------
Confidence                                                 2333333467999999999988643321      111      


Q ss_pred             cccCchHHHHHHHHHHHHHhhcCCeEEE-EEeCCcCcHHHHHHHHHH
Q 010968          274 VCSGGERAFITRIIEDSVALKQTFRWYT-SMVGRKSNLKFLISKLRK  319 (496)
Q Consensus       274 v~~GGel~FI~riI~eS~~ll~~~gwft-smvGk~s~l~~L~~~L~~  319 (496)
                           ...-|.+|+..+..++.++|.+. +-....-..+..++.+.+
T Consensus       311 -----~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~  352 (393)
T COG1092         311 -----AQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIAR  352 (393)
T ss_pred             -----HHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHH
Confidence                 34458899999999999988653 333323334444444433

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.35  E-value=5.1e-06  Score=87.62  Aligned_cols=60  Identities=22%  Similarity=0.230  Sum_probs=48.9

Q ss_pred             CeEEEEcCchhHHHHHHHHHhcC--------------------------------C-------eeEEecCcHHHHHHHHH
Q 010968          117 VKGFDIGTGANCIYPLLGASLLG--------------------------------W-------SFVGSDMTDVALEWAEK  157 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~~--------------------------------~-------~v~avDIs~~AL~~A~~  157 (496)
                      ..++|-=||||-|.+-.|...++                                .       .++|+|||+.+++.|+.
T Consensus       193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~  272 (381)
T COG0116         193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA  272 (381)
T ss_pred             CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence            47999999999887765543321                                1       37899999999999999


Q ss_pred             HHHHCCCCCCcEEEEEccCC
Q 010968          158 NVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       158 N~~~N~~L~~rI~~v~~d~~  177 (496)
                      |++.-+ +.+.|++.+.|..
T Consensus       273 NA~~AG-v~d~I~f~~~d~~  291 (381)
T COG0116         273 NARAAG-VGDLIEFKQADAT  291 (381)
T ss_pred             HHHhcC-CCceEEEEEcchh
Confidence            999985 9999999988753

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.35  E-value=6.7e-06  Score=82.44  Aligned_cols=127  Identities=15%  Similarity=0.210  Sum_probs=100.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|+|.|||||++...|+... +.-+|+..|+.++.++.|++|++..+ +.++|++..+|..+                
T Consensus        95 g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~-l~d~v~~~~~Dv~~----------------  157 (256)
T COG2519          95 GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG-LGDRVTLKLGDVRE----------------  157 (256)
T ss_pred             CCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc-cccceEEEeccccc----------------
Confidence            4589999999999999998655 44699999999999999999999984 88889988887542                


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                             ..  .++.||.++--=|          +|            
T Consensus       158 ---------------------------------------~~--~~~~vDav~LDmp----------~P------------  174 (256)
T COG2519         158 ---------------------------------------GI--DEEDVDAVFLDLP----------DP------------  174 (256)
T ss_pred             ---------------------------------------cc--cccccCEEEEcCC----------Ch------------
Confidence                                                   00  1236787775332          11            


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEec
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFV  331 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~  331 (496)
                               -+.++.....++++|++.+.+.--.|++.+.+.|++.|+..+++.|-+
T Consensus       175 ---------W~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~~E~l  222 (256)
T COG2519         175 ---------WNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEAVETL  222 (256)
T ss_pred             ---------HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhhheee
Confidence                     124455566788999999999888899999999999999999888765

>PLN03075 nicotianamine synthase; Provisional

Probab=98.35  E-value=4.3e-06  Score=85.75  Aligned_cols=63  Identities=24%  Similarity=0.213  Sum_probs=49.8

Q ss_pred             CCCeEEEEcCchhHHHHH-HH-HHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          115 DKVKGFDIGTGANCIYPL-LG-ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~il-La-~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      .+.+|+|||||.|-+..+ ++ ...|+.+|+++|+|++|++.|+++++...++.++|+|+.+|..
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~  187 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVM  187 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchh
Confidence            456899999997755333 33 3468889999999999999999999653248889999988743

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.34  E-value=2e-06  Score=82.76  Aligned_cols=80  Identities=20%  Similarity=0.366  Sum_probs=63.4

Q ss_pred             HhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 010968           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI  171 (496)
Q Consensus        92 ~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~  171 (496)
                      +..+.|+.|......+.     ....+|||||||.|-+..-|+.+-..-..+|+|.|++|+++|+.-+++++ +++.|++
T Consensus        49 ~riv~wl~d~~~~~rv~-----~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~-~~n~I~f  122 (227)
T KOG1271|consen   49 ERIVDWLKDLIVISRVS-----KQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG-FSNEIRF  122 (227)
T ss_pred             HHHHHHHHhhhhhhhhc-----ccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC-CCcceeE
Confidence            45788999887632111     12238999999999988888877555569999999999999988888885 8888999


Q ss_pred             EEccCC
Q 010968          172 RKVDNS  177 (496)
Q Consensus       172 v~~d~~  177 (496)
                      .+.|+.
T Consensus       123 ~q~DI~  128 (227)
T KOG1271|consen  123 QQLDIT  128 (227)
T ss_pred             EEeecc
Confidence            888865

>TIGR00452 methyltransferase, putative

Probab=98.34  E-value=2.2e-05  Score=81.09  Aligned_cols=58  Identities=19%  Similarity=0.012  Sum_probs=38.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ..+|||||||+|.....++... ...|+|+|.|+.++..++...+... ...++.+...+
T Consensus       122 g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~-~~~~v~~~~~~  179 (314)
T TIGR00452       122 GRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLD-NDKRAILEPLG  179 (314)
T ss_pred             CCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhc-cCCCeEEEECC
Confidence            4689999999998766655432 2479999999999987654333211 12456665543

Known examples to date are restricted to the proteobacteria.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.32  E-value=1.7e-05  Score=79.44  Aligned_cols=137  Identities=17%  Similarity=0.230  Sum_probs=99.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+||+-|||||++...|+... |.-+|+-.|+.++.++.|++|++.++ +.+.|++...|+...               
T Consensus        41 G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g-l~~~v~~~~~Dv~~~---------------  104 (247)
T PF08704_consen   41 GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG-LDDNVTVHHRDVCEE---------------  104 (247)
T ss_dssp             T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT-CCTTEEEEES-GGCG---------------
T ss_pred             CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC-CCCCceeEecceecc---------------
Confidence            3589999999999999998765 56799999999999999999999995 888999999886420               


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                          +|+               .+   .+..||.|+--=|          +|..+         
T Consensus       105 --------------------g~~---------------~~---~~~~~DavfLDlp----------~Pw~~---------  127 (247)
T PF08704_consen  105 --------------------GFD---------------EE---LESDFDAVFLDLP----------DPWEA---------  127 (247)
T ss_dssp             ----------------------S---------------TT----TTSEEEEEEESS----------SGGGG---------
T ss_pred             --------------------ccc---------------cc---ccCcccEEEEeCC----------CHHHH---------
Confidence                                000               00   1246787764332          23332         


Q ss_pred             ccCchHHHHHHHHHHHHHhh-cCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecCCCeeEEEE
Q 010968          275 CSGGERAFITRIIEDSVALK-QTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGL  340 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll-~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t~Rw~l  340 (496)
                                  |..+...+ +++|++.+...--.|+..+++.|++.||..+++.|-+   .++|-+
T Consensus       128 ------------i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~~Evl---~R~~~v  179 (247)
T PF08704_consen  128 ------------IPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIETVEVL---LREWEV  179 (247)
T ss_dssp             ------------HHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEEEEEE---EEEEEE
T ss_pred             ------------HHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEEEEEE---eeEEEE
Confidence                        22333345 7899999999888899999999999999999999876   455543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.30  E-value=3.6e-06  Score=85.78  Aligned_cols=60  Identities=23%  Similarity=0.380  Sum_probs=52.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ..++||||||-|.+.+-+|.++ +.+|+|+++|++.++.|++-++.-+ ++++|+++..|..
T Consensus        73 G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~g-l~~~v~v~l~d~r  132 (283)
T COG2230          73 GMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARG-LEDNVEVRLQDYR  132 (283)
T ss_pred             CCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcC-CCcccEEEecccc
Confidence            4689999999999977666554 9999999999999999999998885 8889999888754

>PRK01581 speE spermidine synthase; Validated

Probab=98.29  E-value=2.3e-05  Score=82.55  Aligned_cols=62  Identities=10%  Similarity=0.048  Sum_probs=44.4

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHH-----HHCCCCCCcEEEEEccC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNV-----KSNPHISELIEIRKVDN  176 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~-----~~N~~L~~rI~~v~~d~  176 (496)
                      ++.+||+||||.|.....+.+..+..+|+++|||++++++|++.-     .+...-+.|++++.+|.
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da  216 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDA  216 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcH
Confidence            456999999999987655554333469999999999999999631     11110145888888774

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.27  E-value=2.2e-05  Score=81.06  Aligned_cols=58  Identities=16%  Similarity=-0.011  Sum_probs=41.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ..+|||||||+|..+..++...+ ..|+|+|.|+.++..++...+..+ ...+|.++..+
T Consensus       123 g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~~-~~~~i~~~~~d  180 (322)
T PRK15068        123 GRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLLG-NDQRAHLLPLG  180 (322)
T ss_pred             CCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhcC-CCCCeEEEeCC
Confidence            46899999999988777765533 369999999998876554433321 23468887665

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.27  E-value=5.3e-06  Score=84.73  Aligned_cols=130  Identities=18%  Similarity=0.246  Sum_probs=84.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCC-eeEEecCcHHHHHHHHHHHHHCCCCC-CcEEEEEccCCCCCCcccccccCCccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVKSNPHIS-ELIEIRKVDNSESTPSIQESLTGKSVQ  193 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~-~v~avDIs~~AL~~A~~N~~~N~~L~-~rI~~v~~d~~~~~p~~~~~~~~~~~~  193 (496)
                      ..+|||+-|=+|..++..  ...++ +|+.||+|..|+++|++|++.|+ ++ ++++++..|...               
T Consensus       124 gkrvLnlFsYTGgfsv~A--a~gGA~~v~~VD~S~~al~~a~~N~~lNg-~~~~~~~~~~~Dvf~---------------  185 (286)
T PF10672_consen  124 GKRVLNLFSYTGGFSVAA--AAGGAKEVVSVDSSKRALEWAKENAALNG-LDLDRHRFIQGDVFK---------------  185 (286)
T ss_dssp             TCEEEEET-TTTHHHHHH--HHTTESEEEEEES-HHHHHHHHHHHHHTT--CCTCEEEEES-HHH---------------
T ss_pred             CCceEEecCCCCHHHHHH--HHCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCccceEEEecCHHH---------------
Confidence            469999999999875543  34554 79999999999999999999996 75 689998887431               


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcc
Q 010968          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (496)
Q Consensus       194 ~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Em  273 (496)
                                                           .+..+ +..++||+||+.||=|....         +    .  
T Consensus       186 -------------------------------------~l~~~-~~~~~fD~IIlDPPsF~k~~---------~----~--  212 (286)
T PF10672_consen  186 -------------------------------------FLKRL-KKGGRFDLIILDPPSFAKSK---------F----D--  212 (286)
T ss_dssp             -------------------------------------HHHHH-HHTT-EEEEEE--SSEESST---------C----E--
T ss_pred             -------------------------------------HHHHH-hcCCCCCEEEECCCCCCCCH---------H----H--
Confidence                                                 12221 22468999999999774211         0    0  


Q ss_pred             cccCchHHHHHHHHHHHHHhhcCCeEE-EEEeCCcCcHHHHHHHHHHcC
Q 010968          274 VCSGGERAFITRIIEDSVALKQTFRWY-TSMVGRKSNLKFLISKLRKVG  321 (496)
Q Consensus       274 v~~GGel~FI~riI~eS~~ll~~~gwf-tsmvGk~s~l~~L~~~L~~~g  321 (496)
                           -..=|.+++..+..++.++|.+ ++-....-..+.+++.+++.+
T Consensus       213 -----~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a  256 (286)
T PF10672_consen  213 -----LERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAA  256 (286)
T ss_dssp             -----HHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhC
Confidence                 1123778999999999999864 444443445667777777655

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>TIGR00417 speE spermidine synthase

Probab=98.26  E-value=5.4e-05  Score=76.06  Aligned_cols=60  Identities=13%  Similarity=0.045  Sum_probs=45.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCC-C-CCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPH-I-SELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~-L-~~rI~~v~~d  175 (496)
                      +.+|||||||+|.+...++...+..+++++|+|+++++.|+++....+. + ..+++++..|
T Consensus        73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D  134 (270)
T TIGR00417        73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDD  134 (270)
T ss_pred             CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECc
Confidence            4599999999999877666554457899999999999999998754311 1 2456666654

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.23  E-value=9.3e-06  Score=81.25  Aligned_cols=53  Identities=25%  Similarity=0.377  Sum_probs=41.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcC---CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLG---WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~---~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ..+|||+|||+|.....|+...+.   ++++|+|+|+.|++.|+++.   +    .+.++.+|
T Consensus        86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---~----~~~~~~~d  141 (272)
T PRK11088         86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---P----QVTFCVAS  141 (272)
T ss_pred             CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---C----CCeEEEee
Confidence            357999999999988888766553   48999999999999997653   1    25666665

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.20  E-value=7.9e-06  Score=79.07  Aligned_cols=57  Identities=25%  Similarity=0.344  Sum_probs=45.0

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ++.++||||||.|-.++-||.  .++.|+|+|+|+.+++.+++-++..+ ++  |+....|.
T Consensus        30 ~~g~~LDlgcG~GRNalyLA~--~G~~VtAvD~s~~al~~l~~~a~~~~-l~--i~~~~~Dl   86 (192)
T PF03848_consen   30 KPGKALDLGCGEGRNALYLAS--QGFDVTAVDISPVALEKLQRLAEEEG-LD--IRTRVADL   86 (192)
T ss_dssp             -SSEEEEES-TTSHHHHHHHH--TT-EEEEEESSHHHHHHHHHHHHHTT--T--EEEEE-BG
T ss_pred             CCCcEEEcCCCCcHHHHHHHH--CCCeEEEEECCHHHHHHHHHHHhhcC-ce--eEEEEecc
Confidence            356999999999999888875  48999999999999999999888874 65  87777764

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.19  E-value=7.9e-06  Score=84.67  Aligned_cols=58  Identities=19%  Similarity=0.168  Sum_probs=48.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ..+|||||||+|.++..++..... ..|+++|+++++++.|++|++.++ + +++.++.+|
T Consensus        81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g-~-~nV~~i~gD  139 (322)
T PRK13943         81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG-I-ENVIFVCGD  139 (322)
T ss_pred             CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEeCC
Confidence            358999999999998888876543 479999999999999999999885 5 468887765

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.19  E-value=7.9e-05  Score=71.36  Aligned_cols=72  Identities=24%  Similarity=0.334  Sum_probs=52.0

Q ss_pred             HHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEc
Q 010968           95 IHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKV  174 (496)
Q Consensus        95 i~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~  174 (496)
                      +.||.+.+.....     .....+|||||||+|.+...++..  +..++++|+++.+++.|++++..++ .. ++.+...
T Consensus        30 ~~~i~~~~~~~~~-----~~~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~-~~-~~~~~~~  100 (224)
T TIGR01983        30 LDYIRDTIRKNKK-----PLFGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDP-LL-KIEYRCT  100 (224)
T ss_pred             HHHHHHHHHhccc-----CCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcC-CC-ceEEEeC
Confidence            4677777754210     013468999999999887766543  4579999999999999999998774 32 4666655


Q ss_pred             c
Q 010968          175 D  175 (496)
Q Consensus       175 d  175 (496)
                      +
T Consensus       101 d  101 (224)
T TIGR01983       101 S  101 (224)
T ss_pred             C
Confidence            4

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.16  E-value=7.6e-06  Score=79.55  Aligned_cols=60  Identities=17%  Similarity=0.147  Sum_probs=48.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ...|+|+.||-|..++.+|+......|+|+|++|.|+++.++|++.|+ ++++|.++.+|.
T Consensus       102 ~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNk-v~~~i~~~~~D~  161 (200)
T PF02475_consen  102 GEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNK-VENRIEVINGDA  161 (200)
T ss_dssp             T-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT--TTTEEEEES-G
T ss_pred             ceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcC-CCCeEEEEcCCH
Confidence            458999999999998888875567789999999999999999999995 999999998874

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.15  E-value=7.1e-06  Score=83.08  Aligned_cols=59  Identities=19%  Similarity=0.332  Sum_probs=48.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||.|.++..++.++ +++|+|+.+|++-.+.|++.++..+ ++++|+++..|.
T Consensus        63 G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~g-l~~~v~v~~~D~  121 (273)
T PF02353_consen   63 GDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAG-LEDRVEVRLQDY  121 (273)
T ss_dssp             T-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCST-SSSTEEEEES-G
T ss_pred             CCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEEeec
Confidence            4589999999999988888775 8999999999999999999999885 999999988764

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.15  E-value=1.8e-05  Score=75.01  Aligned_cols=40  Identities=15%  Similarity=0.149  Sum_probs=33.5

Q ss_pred             CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHH
Q 010968          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK  157 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~  157 (496)
                      .+|||||||+|.+...++.. .+..++|+|+++++++.|++
T Consensus        15 ~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~   54 (194)
T TIGR02081        15 SRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA   54 (194)
T ss_pred             CEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH
Confidence            48999999999987777643 46788999999999998864

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PLN02366 spermidine synthase

Probab=98.15  E-value=0.00012  Score=75.63  Aligned_cols=96  Identities=10%  Similarity=0.048  Sum_probs=62.0

Q ss_pred             hcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHH
Q 010968           72 DHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDV  150 (496)
Q Consensus        72 ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~  150 (496)
                      .||.-+.++-..-+ +-+....|-+.+..+....       ..++.+||+||||.|.++..+++. +. .+|+.+|||++
T Consensus        56 ~~g~~L~lDg~~q~-~~~de~~Y~e~l~h~~l~~-------~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~  126 (308)
T PLN02366         56 TYGKVLVLDGVIQL-TERDECAYQEMITHLPLCS-------IPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKM  126 (308)
T ss_pred             CCceEEEECCEeee-cCccHHHHHHHHHHHHHhh-------CCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHH
Confidence            46766666544333 2233344544444332111       123568999999999988777644 54 68999999999


Q ss_pred             HHHHHHHHHHHC-CCC-CCcEEEEEccC
Q 010968          151 ALEWAEKNVKSN-PHI-SELIEIRKVDN  176 (496)
Q Consensus       151 AL~~A~~N~~~N-~~L-~~rI~~v~~d~  176 (496)
                      .++.|++..... ..+ +.|++++.+|.
T Consensus       127 Vi~~ar~~f~~~~~~~~dpRv~vi~~Da  154 (308)
T PLN02366        127 VIDVSKKFFPDLAVGFDDPRVNLHIGDG  154 (308)
T ss_pred             HHHHHHHhhhhhccccCCCceEEEEChH
Confidence            999999987532 113 35899988874

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.15  E-value=3.6e-06  Score=81.96  Aligned_cols=61  Identities=18%  Similarity=0.168  Sum_probs=53.9

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ++.+||+||||+|.-++.++..+| +.+++.+|++++..+.|++|+++.+ ++++|+++.+|.
T Consensus        45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag-~~~~I~~~~gda  106 (205)
T PF01596_consen   45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG-LDDRIEVIEGDA  106 (205)
T ss_dssp             T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT-GGGGEEEEES-H
T ss_pred             CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC-CCCcEEEEEecc
Confidence            356899999999999999998876 5899999999999999999999995 899999999874

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.14  E-value=5.5e-06  Score=89.01  Aligned_cols=90  Identities=17%  Similarity=0.146  Sum_probs=66.9

Q ss_pred             CcEEEecCCCeeC-CCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHH
Q 010968           74 GLNWWIPDGQLCP-TVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL  152 (496)
Q Consensus        74 GL~~~Vp~g~LiP-rvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL  152 (496)
                      |+.|.++++...= -..-.+.++.|+.+.+...         ...+++|+=||.|-+++.||.  ...+|+|+||+++|+
T Consensus       260 ~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~~---------~~~~vlDlYCGvG~f~l~lA~--~~~~V~gvEi~~~aV  328 (432)
T COG2265         260 GVSFQISPRSFFQVNPAVAEKLYETALEWLELA---------GGERVLDLYCGVGTFGLPLAK--RVKKVHGVEISPEAV  328 (432)
T ss_pred             ceEEEeCCCCceecCHHHHHHHHHHHHHHHhhc---------CCCEEEEeccCCChhhhhhcc--cCCEEEEEecCHHHH
Confidence            6667777643332 2222355667777777542         345899999999999988873  356999999999999


Q ss_pred             HHHHHHHHHCCCCCCcEEEEEccC
Q 010968          153 EWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       153 ~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      +.|++|++.|+ +.+ +++..++.
T Consensus       329 ~~A~~NA~~n~-i~N-~~f~~~~a  350 (432)
T COG2265         329 EAAQENAAANG-IDN-VEFIAGDA  350 (432)
T ss_pred             HHHHHHHHHcC-CCc-EEEEeCCH
Confidence            99999999996 766 88887763

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.12  E-value=1e-05  Score=79.84  Aligned_cols=73  Identities=15%  Similarity=0.176  Sum_probs=63.4

Q ss_pred             CCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCC
Q 010968           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISE  167 (496)
Q Consensus        89 P~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~  167 (496)
                      |++-.|+.++..+.            ...++|+|||+.|.=++.+|..+| +.+++.+|++++..+.|++|.++-+ +.+
T Consensus        45 ~e~g~~L~~L~~~~------------~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag-~~~  111 (219)
T COG4122          45 PETGALLRLLARLS------------GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG-VDD  111 (219)
T ss_pred             hhHHHHHHHHHHhc------------CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC-Ccc
Confidence            77888887776554            246899999999998889999888 7899999999999999999999995 999


Q ss_pred             cEEEEEc
Q 010968          168 LIEIRKV  174 (496)
Q Consensus       168 rI~~v~~  174 (496)
                      +|+++.+
T Consensus       112 ~i~~~~~  118 (219)
T COG4122         112 RIELLLG  118 (219)
T ss_pred             eEEEEec
Confidence            9998874

>PLN02476 O-methyltransferase

Probab=98.10  E-value=7.7e-06  Score=83.25  Aligned_cols=60  Identities=12%  Similarity=0.103  Sum_probs=53.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|..++.++...+ +-+++++|+++++++.|++|+++.+ +.++|+++.+|.
T Consensus       119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG-l~~~I~li~GdA  179 (278)
T PLN02476        119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG-VSHKVNVKHGLA  179 (278)
T ss_pred             CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCH
Confidence            46899999999999888887765 5689999999999999999999995 889999999874

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.09  E-value=3.5e-07  Score=76.92  Aligned_cols=44  Identities=25%  Similarity=0.342  Sum_probs=37.5

Q ss_pred             EEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC
Q 010968          120 FDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP  163 (496)
Q Consensus       120 LDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~  163 (496)
                      ||||||+|.+...++..++..+++|+|+|+.|++.|++......
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~   44 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG   44 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC
Confidence            79999999998888888889999999999999999988888763

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.07  E-value=1.3e-05  Score=83.84  Aligned_cols=54  Identities=24%  Similarity=0.274  Sum_probs=42.7

Q ss_pred             eEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       118 ~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      .+||+-||+|-+++.||..  ..+|+|+|+++.|++.|++|++.|+ ++ +++++..+
T Consensus       199 ~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~-i~-n~~f~~~~  252 (352)
T PF05958_consen  199 DVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNG-ID-NVEFIRGD  252 (352)
T ss_dssp             EEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT----SEEEEE--
T ss_pred             cEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcC-CC-cceEEEee
Confidence            7999999999998888754  3589999999999999999999995 74 58888765

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.06  E-value=4.1e-06  Score=84.36  Aligned_cols=53  Identities=28%  Similarity=0.401  Sum_probs=43.5

Q ss_pred             CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 010968          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI  171 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~  171 (496)
                      .+|||+|||.|.+..-||+  .+++|+|+|+++++++.|++-...++-++..|..
T Consensus        91 ~~ilDvGCGgGLLSepLAr--lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y  143 (282)
T KOG1270|consen   91 MKILDVGCGGGLLSEPLAR--LGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAY  143 (282)
T ss_pred             ceEEEeccCccccchhhHh--hCCeeEeecccHHHHHHHHHhhhcCchhccccce
Confidence            4699999999999888875  4689999999999999999998777644443333

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.05  E-value=4.2e-06  Score=84.04  Aligned_cols=45  Identities=22%  Similarity=0.283  Sum_probs=36.4

Q ss_pred             CCCeEEEEcCchhH----HHHHHHHHhc-----CCeeEEecCcHHHHHHHHHHH
Q 010968          115 DKVKGFDIGTGANC----IYPLLGASLL-----GWSFVGSDMTDVALEWAEKNV  159 (496)
Q Consensus       115 ~~~~vLDIGTGSG~----I~ilLa~~~~-----~~~v~avDIs~~AL~~A~~N~  159 (496)
                      .+.+|+|+|||+|-    |+++|+...+     +++|+|+|||+.||+.|++.+
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~  152 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI  152 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence            45799999999996    5555655443     478999999999999999865

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.03  E-value=3.3e-05  Score=82.94  Aligned_cols=55  Identities=13%  Similarity=0.119  Sum_probs=42.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..++||||||+|.+...|+..  ..+++|+|+++.+++.|++   .++ ...+++++..|.
T Consensus        38 ~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~---~~~-~~~~i~~~~~d~   92 (475)
T PLN02336         38 GKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNES---ING-HYKNVKFMCADV   92 (475)
T ss_pred             CCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHH---Hhc-cCCceEEEEecc
Confidence            358999999999998888765  3589999999999987654   232 335688888764

>PRK05785 hypothetical protein; Provisional

Probab=98.02  E-value=1.5e-05  Score=78.08  Aligned_cols=42  Identities=14%  Similarity=0.133  Sum_probs=36.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHH
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN  158 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N  158 (496)
                      +.+|||||||+|-++..|+... +.+|+|+|+|++|++.|++.
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~   93 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA   93 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc
Confidence            4589999999999988887665 67999999999999999753

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.98  E-value=1.2e-05  Score=87.08  Aligned_cols=93  Identities=22%  Similarity=0.159  Sum_probs=67.7

Q ss_pred             hHhcCcEEEecCCCeeCCCCCcHh-HHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCc
Q 010968           70 LHDHGLNWWIPDGQLCPTVPNRSN-YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT  148 (496)
Q Consensus        70 ~~ffGL~~~Vp~g~LiPrvP~R~n-yi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs  148 (496)
                      .+.-||+|.|+++-.-=.--..++ +--.|.|.+...         ....++|++||||.|++.|++.  -.+|+|+|++
T Consensus       346 E~l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~---------~~k~llDv~CGTG~iglala~~--~~~ViGvEi~  414 (534)
T KOG2187|consen  346 ESLLGLTFRISPGAFFQTNTSAAEVLYSTIGEWAGLP---------ADKTLLDVCCGTGTIGLALARG--VKRVIGVEIS  414 (534)
T ss_pred             eecCCeEEEECCchhhccCcHHHHHHHHHHHHHhCCC---------CCcEEEEEeecCCceehhhhcc--ccceeeeecC
Confidence            456789999998877665211111 122344554431         2368999999999999888754  4589999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          149 DVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       149 ~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ++|++-|++|++.|+ ++ +.+|+.+.
T Consensus       415 ~~aV~dA~~nA~~Ng-is-Na~Fi~gq  439 (534)
T KOG2187|consen  415 PDAVEDAEKNAQING-IS-NATFIVGQ  439 (534)
T ss_pred             hhhcchhhhcchhcC-cc-ceeeeecc
Confidence            999999999999996 65 47777763

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=97.98  E-value=6.5e-05  Score=73.46  Aligned_cols=88  Identities=19%  Similarity=0.125  Sum_probs=60.8

Q ss_pred             CcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHH
Q 010968           74 GLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVAL  152 (496)
Q Consensus        74 GL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL  152 (496)
                      +..+.+..++-+..    ...+.++.++|..         ....++||||||||..+.+|+..... -.|+++|+++..+
T Consensus        44 d~~l~i~~~~~is~----P~~~a~~l~~L~l---------~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~  110 (209)
T PF01135_consen   44 DRPLPIGCGQTISA----PSMVARMLEALDL---------KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELA  110 (209)
T ss_dssp             SS-EEEETTEEE------HHHHHHHHHHTTC----------TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHH
T ss_pred             CCCeeecceeechH----HHHHHHHHHHHhc---------CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHH
Confidence            44566667777766    3445555566652         12458999999999998888765433 4799999999999


Q ss_pred             HHHHHHHHHCCCCCCcEEEEEccC
Q 010968          153 EWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       153 ~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      +.|++|++..+ +. +|.++.+|.
T Consensus       111 ~~A~~~l~~~~-~~-nv~~~~gdg  132 (209)
T PF01135_consen  111 ERARRNLARLG-ID-NVEVVVGDG  132 (209)
T ss_dssp             HHHHHHHHHHT-TH-SEEEEES-G
T ss_pred             HHHHHHHHHhc-cC-ceeEEEcch
Confidence            99999999874 43 688888873

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR03438 probable methyltransferase

Probab=97.98  E-value=0.00017  Score=73.55  Aligned_cols=61  Identities=16%  Similarity=0.093  Sum_probs=49.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ..+|||+|||+|.....|+..++ +.+++|+|+|++||+.|++++.... -..+|..+.+|..
T Consensus        64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-p~~~v~~i~gD~~  125 (301)
T TIGR03438        64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY-PQLEVHGICADFT  125 (301)
T ss_pred             CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC-CCceEEEEEEccc
Confidence            35799999999999888887776 6899999999999999999987531 2235777777743

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=97.93  E-value=1.6e-05  Score=74.86  Aligned_cols=61  Identities=16%  Similarity=0.193  Sum_probs=40.5

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC-CCCCcEEEEEccC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP-HISELIEIRKVDN  176 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~-~L~~rI~~v~~d~  176 (496)
                      ...+||+||||+|..++.++......+|+++|.++ +++..+.|++.|+ ....++.+...+.
T Consensus        45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~W  106 (173)
T PF10294_consen   45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDW  106 (173)
T ss_dssp             TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--T
T ss_pred             CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEe
Confidence            45799999999998887777655678999999999 9999999999984 1345677666553

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=97.91  E-value=0.00014  Score=73.44  Aligned_cols=61  Identities=16%  Similarity=0.144  Sum_probs=50.1

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcC------CeeEEecCcHHHHHHHHHHHHHCCCCCCc--EEEEEccC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLG------WSFVGSDMTDVALEWAEKNVKSNPHISEL--IEIRKVDN  176 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~------~~v~avDIs~~AL~~A~~N~~~N~~L~~r--I~~v~~d~  176 (496)
                      ...++||+|+|||-|+..+....+.      .+|+.+||+|++|+++++-+++-+ +.+.  +.++.+|.
T Consensus       100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~-l~~~~~~~w~~~dA  168 (296)
T KOG1540|consen  100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRP-LKASSRVEWVEGDA  168 (296)
T ss_pred             CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcC-CCcCCceEEEeCCc
Confidence            4579999999999999888776554      799999999999999999987764 6544  77777663

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.88  E-value=0.00011  Score=71.80  Aligned_cols=57  Identities=25%  Similarity=0.196  Sum_probs=48.3

Q ss_pred             EEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          119 GFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       119 vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ++||||-.|.+++.|.....--+++|+||++..++.|++|++.++ +.++|+++.+|.
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~-l~~~i~~rlgdG   57 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG-LEDRIEVRLGDG   57 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT--TTTEEEEE-SG
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CcccEEEEECCc
Confidence            689999999999988876554589999999999999999999995 999999999874

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=97.86  E-value=3e-05  Score=77.21  Aligned_cols=140  Identities=24%  Similarity=0.210  Sum_probs=93.7

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCC-eeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccc
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ  193 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~-~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~  193 (496)
                      +..+|||-|||-|.-++..+  ..++ .|+-+|.||..|++|..|==..+..+..|+++.+|..+               
T Consensus       134 ~G~rVLDtC~GLGYtAi~a~--~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e---------------  196 (287)
T COG2521         134 RGERVLDTCTGLGYTAIEAL--ERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE---------------  196 (287)
T ss_pred             cCCEeeeeccCccHHHHHHH--HcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH---------------
Confidence            45689999999997654433  3455 99999999999999988753222234467888877321               


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcc
Q 010968          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (496)
Q Consensus       194 ~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Em  273 (496)
                                                           +...+  ++++||+|+--||=|+-.            |.-.  
T Consensus       197 -------------------------------------~V~~~--~D~sfDaIiHDPPRfS~A------------geLY--  223 (287)
T COG2521         197 -------------------------------------VVKDF--DDESFDAIIHDPPRFSLA------------GELY--  223 (287)
T ss_pred             -------------------------------------HHhcC--CccccceEeeCCCccchh------------hhHh--
Confidence                                                 11111  367899999999988632            2111  


Q ss_pred             cccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcC-------cHHHHHHHHHHcCCeeEEEEEecCC
Q 010968          274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKS-------NLKFLISKLRKVGVTIVKTTEFVQG  333 (496)
Q Consensus       274 v~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s-------~l~~L~~~L~~~g~~~vk~~ed~qG  333 (496)
                           .++||+.+.+    +++++|-..--+|.+.       -.+.+.+.|++.||..|+..+..-|
T Consensus       224 -----seefY~El~R----iLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~~~g  281 (287)
T COG2521         224 -----SEEFYRELYR----ILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVREALG  281 (287)
T ss_pred             -----HHHHHHHHHH----HcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeehhccc
Confidence                 3567776654    6777765545555333       2457888999999988887654333

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=97.84  E-value=0.00029  Score=73.68  Aligned_cols=143  Identities=19%  Similarity=0.214  Sum_probs=97.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEc-cCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKV-DNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~-d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ...+||==||||.|.  +-+.+-+++++|+||+.++++-|+.|.+..+ +++ ..++.+ |...                
T Consensus       198 G~~vlDPFcGTGgiL--iEagl~G~~viG~Did~~mv~gak~Nl~~y~-i~~-~~~~~~~Da~~----------------  257 (347)
T COG1041         198 GELVLDPFCGTGGIL--IEAGLMGARVIGSDIDERMVRGAKINLEYYG-IED-YPVLKVLDATN----------------  257 (347)
T ss_pred             CCEeecCcCCccHHH--HhhhhcCceEeecchHHHHHhhhhhhhhhhC-cCc-eeEEEeccccc----------------
Confidence            348999999999884  4445789999999999999999999999884 554 444444 4321                


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                           + ++  ++.+||-|+|-|||-.+...+..         .    
T Consensus       258 -------------------------------------l-pl--~~~~vdaIatDPPYGrst~~~~~---------~----  284 (347)
T COG1041         258 -------------------------------------L-PL--RDNSVDAIATDPPYGRSTKIKGE---------G----  284 (347)
T ss_pred             -------------------------------------C-CC--CCCccceEEecCCCCcccccccc---------c----
Confidence                                                 0 11  12369999999999876432210         0    


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEe-cCCCeeEEEE
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEF-VQGQTCRWGL  340 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed-~qG~t~Rw~l  340 (496)
                          =...|.++++.+...++++||+.+-..     ..-...+.+.++..+..+.. ++|.-.|.+.
T Consensus       285 ----l~~Ly~~~le~~~evLk~gG~~vf~~p-----~~~~~~~~~~~f~v~~~~~~~~H~sLtR~i~  342 (347)
T COG1041         285 ----LDELYEEALESASEVLKPGGRIVFAAP-----RDPRHELEELGFKVLGRFTMRVHGSLTRVIY  342 (347)
T ss_pred             ----HHHHHHHHHHHHHHHhhcCcEEEEecC-----CcchhhHhhcCceEEEEEEEeecCceEEEEE
Confidence                145788899998899999998754443     23344566778876655443 4555566543

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.82  E-value=3.1e-05  Score=81.86  Aligned_cols=58  Identities=19%  Similarity=0.172  Sum_probs=49.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      +.++||+.||||..++.++.+.++ .+|+++|+|++|++.+++|++.|+ +. .++++..|
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~-~~-~~~v~~~D  103 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS-VE-NIEVPNED  103 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC-CC-cEEEEchh
Confidence            368999999999999999887655 589999999999999999999995 54 47777665

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=97.81  E-value=6e-05  Score=78.57  Aligned_cols=58  Identities=19%  Similarity=0.280  Sum_probs=48.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ...|||+|||+|.+....| +-...+|+|+|-|.-| +.|++.++.|+ +++.|+++++.+
T Consensus        61 dK~VlDVGcGtGILS~F~a-kAGA~~V~aVe~S~ia-~~a~~iv~~N~-~~~ii~vi~gkv  118 (346)
T KOG1499|consen   61 DKTVLDVGCGTGILSMFAA-KAGARKVYAVEASSIA-DFARKIVKDNG-LEDVITVIKGKV  118 (346)
T ss_pred             CCEEEEcCCCccHHHHHHH-HhCcceEEEEechHHH-HHHHHHHHhcC-ccceEEEeecce
Confidence            4689999999997755444 3345689999999877 99999999995 999999998864

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=97.80  E-value=9e-05  Score=74.28  Aligned_cols=60  Identities=12%  Similarity=0.114  Sum_probs=53.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..++|+|||++|.-++.++...+ +.+++.+|++++..+.|++|++..+ +.++|+++.++.
T Consensus        80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag-~~~~I~~~~G~a  140 (247)
T PLN02589         80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG-VAHKIDFREGPA  140 (247)
T ss_pred             CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC-CCCceEEEeccH
Confidence            46899999999988888887664 6799999999999999999999995 889999998874

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=97.78  E-value=6.6e-05  Score=72.45  Aligned_cols=60  Identities=12%  Similarity=0.044  Sum_probs=50.6

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ...++||+-+|||++++-.+.+ ...+++.+|.|.+|+...++|++..+ +..+.+++..|.
T Consensus        43 ~g~~~LDlFAGSGaLGlEAlSR-GA~~~~~vE~~~~a~~~l~~N~~~l~-~~~~~~~~~~da  102 (187)
T COG0742          43 EGARVLDLFAGSGALGLEALSR-GAARVVFVEKDRKAVKILKENLKALG-LEGEARVLRNDA  102 (187)
T ss_pred             CCCEEEEecCCccHhHHHHHhC-CCceEEEEecCHHHHHHHHHHHHHhC-CccceEEEeecH
Confidence            3569999999999998776654 34689999999999999999999874 778888888763

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=97.77  E-value=7.5e-05  Score=80.70  Aligned_cols=61  Identities=13%  Similarity=0.071  Sum_probs=46.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHH---h-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGAS---L-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~---~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ...|+|+|||+|.+....+..   . ...+|+|+|.++.|+...++-++.|+ ++++|+++++|..
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~-w~~~V~vi~~d~r  251 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG-WGDKVTVIHGDMR  251 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT-TTTTEEEEES-TT
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC-CCCeEEEEeCccc
Confidence            468999999999875443322   1 24699999999999988888878885 9999999999854

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=0.00022  Score=69.99  Aligned_cols=57  Identities=21%  Similarity=0.314  Sum_probs=48.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+||+||||||.-+..|+.- -+ +|+.+|++++..+.|++|.+..+ +.+ |.++.+|.
T Consensus        73 g~~VLEIGtGsGY~aAvla~l-~~-~V~siEr~~~L~~~A~~~L~~lg-~~n-V~v~~gDG  129 (209)
T COG2518          73 GDRVLEIGTGSGYQAAVLARL-VG-RVVSIERIEELAEQARRNLETLG-YEN-VTVRHGDG  129 (209)
T ss_pred             CCeEEEECCCchHHHHHHHHH-hC-eEEEEEEcHHHHHHHHHHHHHcC-CCc-eEEEECCc
Confidence            468999999999887777653 34 99999999999999999999985 755 99999884

>PLN02823 spermine synthase

Probab=97.72  E-value=0.0009  Score=69.97  Aligned_cols=63  Identities=14%  Similarity=0.130  Sum_probs=48.3

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC-CC-CCcEEEEEccCC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP-HI-SELIEIRKVDNS  177 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~-~L-~~rI~~v~~d~~  177 (496)
                      ++.+||-||+|.|.++..+++..+..+++++|||++.+++|++....+. .+ +.|++++..|..
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~  167 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDAR  167 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhH
Confidence            3568999999999887666654445689999999999999999875431 11 468898888743

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.68  E-value=0.00013  Score=65.13  Aligned_cols=57  Identities=16%  Similarity=0.061  Sum_probs=49.6

Q ss_pred             eEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       118 ~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      .++|||||.|.++..++...++++++++|.++.+++.+++|++.|+ +. +++++....
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~-~~-~v~~~~~al   57 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN-LP-NVVLLNAAV   57 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC-CC-cEEEEEeee
Confidence            3899999999998888887788899999999999999999999985 64 488877653

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=97.65  E-value=0.00013  Score=75.99  Aligned_cols=59  Identities=17%  Similarity=0.229  Sum_probs=47.5

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ....|||+|||||.+. ..|+.-...+|+|+|-|+ +.++|++-++.|+ +.+||.++.+.+
T Consensus       177 ~~kiVlDVGaGSGILS-~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~-~~~rItVI~GKi  235 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILS-FFAAQAGAKKVYAVEASE-MAQYARKLVASNN-LADRITVIPGKI  235 (517)
T ss_pred             CCcEEEEecCCccHHH-HHHHHhCcceEEEEehhH-HHHHHHHHHhcCC-ccceEEEccCcc
Confidence            4568999999999764 344444446899999986 7899999999994 999999998864

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=97.65  E-value=0.00012  Score=71.38  Aligned_cols=54  Identities=15%  Similarity=0.202  Sum_probs=42.0

Q ss_pred             CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      .++||+|||.|.+...|+.+.  -+++++|+++.|++.|++.....    ..|+++..+.
T Consensus        45 ~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~----~~V~~~~~dv   98 (201)
T PF05401_consen   45 RRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGL----PHVEWIQADV   98 (201)
T ss_dssp             EEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-----SSEEEEES-T
T ss_pred             ceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCC----CCeEEEECcC
Confidence            589999999999988887665  38999999999999999988753    3699988875

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=97.62  E-value=8.3e-05  Score=73.47  Aligned_cols=56  Identities=20%  Similarity=0.175  Sum_probs=45.5

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ...+|.|||||.|.---+|+.++|++.++|+|-|++||+-|+.   +.+    ..++..+|..
T Consensus        30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~---rlp----~~~f~~aDl~   85 (257)
T COG4106          30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQ---RLP----DATFEEADLR   85 (257)
T ss_pred             ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHH---hCC----CCceecccHh
Confidence            3568999999999988889999999999999999999999843   322    3566666643

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=97.61  E-value=0.00012  Score=70.87  Aligned_cols=52  Identities=12%  Similarity=0.095  Sum_probs=39.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ..+|||||||.|.+...|.. ..+..++|+|||++.+..|.+    ++     +.++++|..
T Consensus        14 gsrVLDLGCGdG~LL~~L~~-~k~v~g~GvEid~~~v~~cv~----rG-----v~Viq~Dld   65 (193)
T PF07021_consen   14 GSRVLDLGCGDGELLAYLKD-EKQVDGYGVEIDPDNVAACVA----RG-----VSVIQGDLD   65 (193)
T ss_pred             CCEEEecCCCchHHHHHHHH-hcCCeEEEEecCHHHHHHHHH----cC-----CCEEECCHH
Confidence            35899999999988665554 468999999999998766533    32     567777753

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.61  E-value=0.00019  Score=71.88  Aligned_cols=47  Identities=17%  Similarity=0.316  Sum_probs=42.8

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHH
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS  161 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~  161 (496)
                      .+..+|||||-+|.+.+.+++.+....|+|+|||+..+..|++|++.
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~  104 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF  104 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence            45789999999999999999887777899999999999999999974

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.58  E-value=0.00078  Score=73.62  Aligned_cols=58  Identities=19%  Similarity=0.172  Sum_probs=42.7

Q ss_pred             CeEEEEcCchhHHHHHHHHHhc----CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          117 VKGFDIGTGANCIYPLLGASLL----GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~----~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      .+|.|-+||||......+....    ...++|.|+++..+.+|+.|.-.++ ++..+.+..+|
T Consensus       188 ~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhg-i~~~~~i~~~d  249 (489)
T COG0286         188 NSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHG-IEGDANIRHGD  249 (489)
T ss_pred             CeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhC-CCccccccccc
Confidence            3899999999977555444332    3679999999999999999999885 54323444443

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.51  E-value=0.0037  Score=60.18  Aligned_cols=127  Identities=17%  Similarity=0.194  Sum_probs=88.5

Q ss_pred             eEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccc
Q 010968          118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESN  197 (496)
Q Consensus       118 ~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~  197 (496)
                      +++|||||.|.=++.|+..+|+++++.+|-..+-+..-+.-+...+ |+ +++++.....+                   
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~-L~-nv~v~~~R~E~-------------------  109 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG-LS-NVEVINGRAEE-------------------  109 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT--S-SEEEEES-HHH-------------------
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC-CC-CEEEEEeeecc-------------------
Confidence            7999999999988888888999999999999999888888887774 75 58888764210                   


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccccC
Q 010968          198 MDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSG  277 (496)
Q Consensus       198 ~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~G  277 (496)
                                                            ....++||+|+|=                |++          
T Consensus       110 --------------------------------------~~~~~~fd~v~aR----------------Av~----------  125 (184)
T PF02527_consen  110 --------------------------------------PEYRESFDVVTAR----------------AVA----------  125 (184)
T ss_dssp             --------------------------------------TTTTT-EEEEEEE----------------SSS----------
T ss_pred             --------------------------------------cccCCCccEEEee----------------hhc----------
Confidence                                                  0024689999861                111          


Q ss_pred             chHHHHHHHHHHHHHhhcCCeEEEEEeCCcC--cHHHHHHHHHHcCCeeEEEEEecCC
Q 010968          278 GERAFITRIIEDSVALKQTFRWYTSMVGRKS--NLKFLISKLRKVGVTIVKTTEFVQG  333 (496)
Q Consensus       278 Gel~FI~riI~eS~~ll~~~gwftsmvGk~s--~l~~L~~~L~~~g~~~vk~~ed~qG  333 (496)
                       .   +..+++-+..+++++|.+..|-|+..  .++.+...+...++....+.++...
T Consensus       126 -~---l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~v~~~~~~  179 (184)
T PF02527_consen  126 -P---LDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLSVPEFELP  179 (184)
T ss_dssp             -S---HHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEEEEEEE-T
T ss_pred             -C---HHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEeeeccccCC
Confidence             1   45566667778889999899999543  3445566677778777776666433

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=97.51  E-value=0.00045  Score=67.78  Aligned_cols=39  Identities=15%  Similarity=0.124  Sum_probs=34.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHH
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAE  156 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~  156 (496)
                      ..+|||+|||.|--+..||.  .+++|+|+|+++.|++.|.
T Consensus        38 ~~rvL~~gCG~G~da~~LA~--~G~~V~avD~s~~Ai~~~~   76 (218)
T PRK13255         38 GSRVLVPLCGKSLDMLWLAE--QGHEVLGVELSELAVEQFF   76 (218)
T ss_pred             CCeEEEeCCCChHhHHHHHh--CCCeEEEEccCHHHHHHHH
Confidence            35899999999999888875  5899999999999999874

>PTZ00146 fibrillarin; Provisional

Probab=97.50  E-value=0.0064  Score=62.62  Aligned_cols=56  Identities=9%  Similarity=-0.072  Sum_probs=38.7

Q ss_pred             CeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          117 VKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      .+|||||||+|.....++.... .-.|+|+|+++++++...+-++..    .+|.++..|.
T Consensus       134 ~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r----~NI~~I~~Da  190 (293)
T PTZ00146        134 SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR----PNIVPIIEDA  190 (293)
T ss_pred             CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc----CCCEEEECCc
Confidence            5899999999998877776653 358999999998664443333221    1366666664

>PRK04148 hypothetical protein; Provisional

Probab=97.44  E-value=0.00037  Score=64.07  Aligned_cols=52  Identities=21%  Similarity=0.177  Sum_probs=40.3

Q ss_pred             CCCeEEEEcCchhH-HHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          115 DKVKGFDIGTGANC-IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       115 ~~~~vLDIGTGSG~-I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ++.+++|||||+|. ++..|+.  .+..|+|+|+++.+++.|+++.         +.++..|..
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~--~G~~ViaIDi~~~aV~~a~~~~---------~~~v~dDlf   68 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKE--SGFDVIVIDINEKAVEKAKKLG---------LNAFVDDLF   68 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHH--CCCEEEEEECCHHHHHHHHHhC---------CeEEECcCC
Confidence            34689999999995 7777763  4789999999999988886652         456667754

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.43  E-value=0.00059  Score=68.29  Aligned_cols=71  Identities=17%  Similarity=0.123  Sum_probs=55.6

Q ss_pred             HhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 010968           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI  171 (496)
Q Consensus        92 ~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~  171 (496)
                      .+++..|.+.+...         ....|||||.|.|.+...|+...  .+++++|+|++.++..++....+    .++++
T Consensus        16 ~~~~~~Iv~~~~~~---------~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~----~~~~v   80 (262)
T PF00398_consen   16 PNIADKIVDALDLS---------EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASN----PNVEV   80 (262)
T ss_dssp             HHHHHHHHHHHTCG---------TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTC----SSEEE
T ss_pred             HHHHHHHHHhcCCC---------CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhc----cccee
Confidence            56777777777531         35689999999999988886654  79999999999999988876533    57999


Q ss_pred             EEccCC
Q 010968          172 RKVDNS  177 (496)
Q Consensus       172 v~~d~~  177 (496)
                      +.+|..
T Consensus        81 i~~D~l   86 (262)
T PF00398_consen   81 INGDFL   86 (262)
T ss_dssp             EES-TT
T ss_pred             eecchh
Confidence            999865

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.43  E-value=0.0037  Score=61.93  Aligned_cols=130  Identities=21%  Similarity=0.200  Sum_probs=95.9

Q ss_pred             CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccccc
Q 010968          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDES  196 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~  196 (496)
                      ..+.||||-.+-++..|....+...++++||++-.++.|.+|+++++ +.++|+++.+|...                  
T Consensus        18 ~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~-l~~~i~vr~~dgl~------------------   78 (226)
T COG2384          18 ARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN-LSERIDVRLGDGLA------------------   78 (226)
T ss_pred             CceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC-CcceEEEeccCCcc------------------
Confidence            34999999999998888777777899999999999999999999995 99999999887431                  


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccccc
Q 010968          197 NMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCS  276 (496)
Q Consensus       197 ~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~  276 (496)
                                                           . +..+..+|.|+-          ++.                
T Consensus        79 -------------------------------------~-l~~~d~~d~ivI----------AGM----------------   94 (226)
T COG2384          79 -------------------------------------V-LELEDEIDVIVI----------AGM----------------   94 (226)
T ss_pred             -------------------------------------c-cCccCCcCEEEE----------eCC----------------
Confidence                                                 0 112345666651          221                


Q ss_pred             CchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecCCC
Q 010968          277 GGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQ  334 (496)
Q Consensus       277 GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~  334 (496)
                        |-..|+.|+++....++...-  ..+--..+...|.+.|.+.++.. +.-..+.++
T Consensus        95 --GG~lI~~ILee~~~~l~~~~r--lILQPn~~~~~LR~~L~~~~~~I-~~E~ileE~  147 (226)
T COG2384          95 --GGTLIREILEEGKEKLKGVER--LILQPNIHTYELREWLSANSYEI-KAETILEED  147 (226)
T ss_pred             --cHHHHHHHHHHhhhhhcCcce--EEECCCCCHHHHHHHHHhCCcee-eeeeeeccc
Confidence              224588899998877665532  45555788999999999999864 334444443

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.36  E-value=0.00084  Score=67.91  Aligned_cols=56  Identities=11%  Similarity=0.076  Sum_probs=45.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ...||+||.|.|++-..|+.+  ..+|+|+|||+..++.-++....    .++++++.+|..
T Consensus        31 ~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~----~~n~~vi~~DaL   86 (259)
T COG0030          31 GDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFAP----YDNLTVINGDAL   86 (259)
T ss_pred             CCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhccc----ccceEEEeCchh
Confidence            458999999999998777654  45799999999999988877652    257999999854

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=97.35  E-value=0.00046  Score=67.49  Aligned_cols=40  Identities=18%  Similarity=0.199  Sum_probs=34.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHH
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK  157 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~  157 (496)
                      ..++||+|||.|--+..||.  .+++|+|+|+|+.|++.|..
T Consensus        35 ~~rvLd~GCG~G~da~~LA~--~G~~V~gvD~S~~Ai~~~~~   74 (213)
T TIGR03840        35 GARVFVPLCGKSLDLAWLAE--QGHRVLGVELSEIAVEQFFA   74 (213)
T ss_pred             CCeEEEeCCCchhHHHHHHh--CCCeEEEEeCCHHHHHHHHH
Confidence            35899999999999888875  48999999999999998643

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=97.24  E-value=0.0014  Score=63.19  Aligned_cols=59  Identities=14%  Similarity=0.171  Sum_probs=49.7

Q ss_pred             CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ..+||||||.|-..+.+|...|+..++|+|+....+..|.+.+...+ + .++.++.+|..
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~-l-~Nv~~~~~da~   77 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG-L-KNVRFLRGDAR   77 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT-T-SSEEEEES-CT
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc-c-cceEEEEccHH
Confidence            38999999999998999999999999999999999999999998874 5 46999888743

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=97.20  E-value=0.00046  Score=69.12  Aligned_cols=57  Identities=23%  Similarity=0.484  Sum_probs=41.9

Q ss_pred             CCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHH
Q 010968           86 PTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK  157 (496)
Q Consensus        86 PrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~  157 (496)
                      |..|     ..|+.++...+       .+ ...++|+|||+|--+..++ .++. +|+|+|+++.+|++|++
T Consensus        17 P~YP-----tdw~~~ia~~~-------~~-h~~a~DvG~G~Gqa~~~ia-e~~k-~VIatD~s~~mL~~a~k   73 (261)
T KOG3010|consen   17 PSYP-----TDWFKKIASRT-------EG-HRLAWDVGTGNGQAARGIA-EHYK-EVIATDVSEAMLKVAKK   73 (261)
T ss_pred             CCCc-----HHHHHHHHhhC-------CC-cceEEEeccCCCcchHHHH-Hhhh-hheeecCCHHHHHHhhc
Confidence            6666     57888887643       12 2389999999995544444 4443 79999999999998865

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.10  E-value=0.0042  Score=67.75  Aligned_cols=144  Identities=15%  Similarity=0.123  Sum_probs=92.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|||+|+|.|.=...|+..+.+ -.++|.|+++.-++..++|+++.+ +. .|.+...|...                
T Consensus       114 g~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G-~~-nv~v~~~D~~~----------------  175 (470)
T PRK11933        114 PQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG-VS-NVALTHFDGRV----------------  175 (470)
T ss_pred             CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC-eEEEEeCchhh----------------
Confidence            458999999999988888877654 589999999999999999999985 64 36666555221                


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccc-cCCCCcccCCCCCcc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEA-GLNPKTSCGGTPEEM  273 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea-~~eP~~al~G~~~Em  273 (496)
                                                           +...  ..+.||.|++-+|=  |.+.. ..+|.....-+... 
T Consensus       176 -------------------------------------~~~~--~~~~fD~ILvDaPC--SG~G~~rk~p~~~~~~s~~~-  213 (470)
T PRK11933        176 -------------------------------------FGAA--LPETFDAILLDAPC--SGEGTVRKDPDALKNWSPES-  213 (470)
T ss_pred             -------------------------------------hhhh--chhhcCeEEEcCCC--CCCcccccCHHHhhhCCHHH-
Confidence                                                 0000  12469999999994  43322 23343322111110 


Q ss_pred             cccCchHHHHHHHHHHHHHhhcCCeEE---EEEeCCcCcHHHHHHHHHHcC
Q 010968          274 VCSGGERAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVG  321 (496)
Q Consensus       274 v~~GGel~FI~riI~eS~~ll~~~gwf---tsmvGk~s~l~~L~~~L~~~g  321 (496)
                      +..  =...=++|++.+..+++++|.+   |+-+....+-.-+...|++.+
T Consensus       214 v~~--l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~  262 (470)
T PRK11933        214 NLE--IAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYP  262 (470)
T ss_pred             HHH--HHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCC
Confidence            000  0122356889999999999876   445554555555666677654

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.10  E-value=0.0018  Score=58.95  Aligned_cols=60  Identities=15%  Similarity=0.194  Sum_probs=46.5

Q ss_pred             CCCeEEEEcCchhHHHHHHHHH----hcCCeeEEecCcHHHHHHHHHHHHHCC-CCCCcEEEEEc
Q 010968          115 DKVKGFDIGTGANCIYPLLGAS----LLGWSFVGSDMTDVALEWAEKNVKSNP-HISELIEIRKV  174 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~----~~~~~v~avDIs~~AL~~A~~N~~~N~-~L~~rI~~v~~  174 (496)
                      ....|+|+|+|-|.++..|+..    .++++|+|+|.++..++.|++..+..+ .+..++.+...
T Consensus        25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   89 (141)
T PF13679_consen   25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQG   89 (141)
T ss_pred             CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhcc
Confidence            4578999999999999988872    278999999999999999998887652 12334444444

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=97.09  E-value=0.0016  Score=58.19  Aligned_cols=38  Identities=24%  Similarity=0.422  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHH
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEW  154 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~  154 (496)
                      ...+|||||||.|.+...++..  +.+++|+|+++.+++.
T Consensus        22 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~   59 (161)
T PF13489_consen   22 PGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK   59 (161)
T ss_dssp             TTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh
Confidence            4569999999999887777433  4599999999999988

...

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=97.08  E-value=0.00042  Score=68.75  Aligned_cols=41  Identities=27%  Similarity=0.327  Sum_probs=34.9

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHH
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK  157 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~  157 (496)
                      +..-|||||||||.-+..|.  -.+..++|+|||+.||+.|.+
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~--~~Gh~wiGvDiSpsML~~a~~   90 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLS--DSGHQWIGVDISPSMLEQAVE   90 (270)
T ss_pred             CCcEEEEeccCCCcchheec--cCCceEEeecCCHHHHHHHHH
Confidence            56789999999997766663  457899999999999999987

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.05  E-value=0.0018  Score=66.06  Aligned_cols=59  Identities=19%  Similarity=0.168  Sum_probs=48.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ...||++|-|+|.+-..|.  ..+.+|+|+|+|+.++..-++-++..+ .+.+.+++.+|..
T Consensus        59 tD~VLEvGPGTGnLT~~lL--e~~kkVvA~E~Dprmvael~krv~gtp-~~~kLqV~~gD~l  117 (315)
T KOG0820|consen   59 TDVVLEVGPGTGNLTVKLL--EAGKKVVAVEIDPRMVAELEKRVQGTP-KSGKLQVLHGDFL  117 (315)
T ss_pred             CCEEEEeCCCCCHHHHHHH--HhcCeEEEEecCcHHHHHHHHHhcCCC-ccceeeEEecccc
Confidence            3589999999998765554  346799999999999999988887765 6788888888743

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.04  E-value=0.0013  Score=67.63  Aligned_cols=57  Identities=12%  Similarity=-0.074  Sum_probs=48.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ...+||.+||.|.-...++...+ +.+|+|+|+|++|++.|++++..    .+++++++++.
T Consensus        20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~----~~ri~~i~~~f   77 (296)
T PRK00050         20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP----FGRFTLVHGNF   77 (296)
T ss_pred             CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc----CCcEEEEeCCH
Confidence            35899999999999888887775 68999999999999999988754    25799998874

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=96.87  E-value=0.0087  Score=62.54  Aligned_cols=64  Identities=16%  Similarity=0.244  Sum_probs=37.3

Q ss_pred             HHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHH-HHHHHHHhcCCeeEEecCcHHHHHHHHHHH
Q 010968           94 YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCI-YPLLGASLLGWSFVGSDMTDVALEWAEKNV  159 (496)
Q Consensus        94 yi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I-~ilLa~~~~~~~v~avDIs~~AL~~A~~N~  159 (496)
                      |=-||..+|-....+.........+|||||||-|.= .-...  ..-..++|+||++++++.|++-.
T Consensus        41 fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~--~~i~~~vg~Dis~~si~ea~~Ry  105 (331)
T PF03291_consen   41 FNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQK--AKIKHYVGIDISEESIEEARERY  105 (331)
T ss_dssp             HHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHH--TT-SEEEEEES-HHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHh--cCCCEEEEEeCCHHHHHHHHHHH
Confidence            344666655332222111112457999999997753 22221  12258999999999999999877

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.82  E-value=0.003  Score=63.57  Aligned_cols=118  Identities=19%  Similarity=0.212  Sum_probs=73.5

Q ss_pred             CCCCCHHHHHhhCCCccccccccCCCCcceecCChhhHHHHHHHHHhHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhc
Q 010968           24 ENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLS  103 (496)
Q Consensus        24 ~~~pDF~~La~~yP~f~~~v~~~~~G~~~IDf~d~~A~r~Lt~aLL~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~  103 (496)
                      ..+||.++|.++.   .+          ..+..|+++++...+.+|.....-.         .|.   .++.+....+..
T Consensus        47 ~~~p~~~~ll~~l---~~----------a~~~~D~e~~~~~~r~lL~~HaST~---------ERl---~~Ld~fY~~if~  101 (251)
T PF07091_consen   47 EGRPDYDALLRKL---QE----------ALDVGDPEAIRAWCRRLLAGHASTR---------ERL---PNLDEFYDEIFG  101 (251)
T ss_dssp             SS---HHHHHHHH---HH----------HHCTTHHHHHHHHHHHHHHTSHHHH---------CCG---GGHHHHHHHHCC
T ss_pred             cCCCCHHHHHHHH---Hh----------ccCcCCHHHHHHHHHHHHhhccchh---------hhh---hhHHHHHHHHHh
Confidence            4677777777662   22          3667889999998888876543322         111   234444555554


Q ss_pred             cCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          104 SNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       104 ~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ..        +.+.+|+|||||-.-+++-.....++..++|+|||..+++.-..-+...+ ..  .++...|..
T Consensus       102 ~~--------~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~-~~--~~~~v~Dl~  164 (251)
T PF07091_consen  102 RI--------PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG-VP--HDARVRDLL  164 (251)
T ss_dssp             CS-----------SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--C--EEEEEE-TT
T ss_pred             cC--------CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC-CC--cceeEeeee
Confidence            32        13568999999999887665555567899999999999999988877763 44  455555644

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=96.63  E-value=0.013  Score=57.93  Aligned_cols=58  Identities=17%  Similarity=0.140  Sum_probs=43.5

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEE-EEEcc
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIE-IRKVD  175 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~-~v~~d  175 (496)
                      .++.+|++|||+|.-..-+- -.|+.+|+++|=++.+-++|.+.++.+..+  +++ ++.++
T Consensus        76 ~K~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k~~--~~~~fvva~  134 (252)
T KOG4300|consen   76 GKGDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKKPL--QVERFVVAD  134 (252)
T ss_pred             CccceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhccCc--ceEEEEeec
Confidence            45678999999997643321 126789999999999999999999887422  355 66665

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.62  E-value=0.0032  Score=62.34  Aligned_cols=69  Identities=23%  Similarity=0.234  Sum_probs=44.5

Q ss_pred             CCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcC--CeeEEecCcHHHHHHHHHHHHH
Q 010968           86 PTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLG--WSFVGSDMTDVALEWAEKNVKS  161 (496)
Q Consensus        86 PrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~--~~v~avDIs~~AL~~A~~N~~~  161 (496)
                      |..|-|+.-+. .+..+...      ..+.+..+-|=|||+|.+.-.|+.-..+  .+|+|+|||+++|++|++|...
T Consensus        29 p~FPVRLAsEi-~qR~l~~l------~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~L   99 (246)
T PF11599_consen   29 PAFPVRLASEI-FQRALHYL------EGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSL   99 (246)
T ss_dssp             ----HHHHHHH-HHHHHCTS------SS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHC
T ss_pred             CCccHHHHHHH-HHHHHHhh------cCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhh
Confidence            55576755442 23344321      1245789999999999988777765544  4899999999999999999854

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PRK10742 putative methyltransferase; Provisional

Probab=96.57  E-value=0.0071  Score=61.00  Aligned_cols=58  Identities=10%  Similarity=0.053  Sum_probs=47.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC------CC-CCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN------PH-ISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N------~~-L~~rI~~v~~d  175 (496)
                      ..+|||+-+|+|..+..++.+  +++|+++|.++.+..+.+.|+++.      +. +..+++++++|
T Consensus        89 ~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d  153 (250)
T PRK10742         89 LPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS  153 (250)
T ss_pred             CCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence            348999999999999888765  778999999999999999999873      11 22467777776

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=96.53  E-value=0.005  Score=63.19  Aligned_cols=45  Identities=20%  Similarity=0.305  Sum_probs=35.1

Q ss_pred             CCCeEEEEcCchh----HHHHHHHHHhc----CCeeEEecCcHHHHHHHHHHH
Q 010968          115 DKVKGFDIGTGAN----CIYPLLGASLL----GWSFVGSDMTDVALEWAEKNV  159 (496)
Q Consensus       115 ~~~~vLDIGTGSG----~I~ilLa~~~~----~~~v~avDIs~~AL~~A~~N~  159 (496)
                      ...+|+..||.||    -|+++|....+    +++|+|+|||+.+|+.|++-+
T Consensus       115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~  167 (287)
T PRK10611        115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGI  167 (287)
T ss_pred             CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCC
Confidence            3589999999999    35555544322    478999999999999999864

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=96.47  E-value=0.057  Score=54.03  Aligned_cols=62  Identities=16%  Similarity=-0.014  Sum_probs=44.1

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC--CCCCcEEEEEccC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP--HISELIEIRKVDN  176 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~--~L~~rI~~v~~d~  176 (496)
                      ++.+||=||-|.|.++-.+.+..+..+++++|||+..++.|++-.....  .-+.|++++..|.
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg  139 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDG  139 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTH
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhh
Confidence            4678999999999887666543334689999999999999998654321  1246899988873

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=96.41  E-value=0.016  Score=57.66  Aligned_cols=40  Identities=10%  Similarity=-0.012  Sum_probs=35.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHH
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK  157 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~  157 (496)
                      ..+||+.|||.|.-+..|+.  .+++|+|+|+|+.|++.+.+
T Consensus        44 ~~rvLvPgCGkg~D~~~LA~--~G~~V~GvDlS~~Ai~~~~~   83 (226)
T PRK13256         44 SSVCLIPMCGCSIDMLFFLS--KGVKVIGIELSEKAVLSFFS   83 (226)
T ss_pred             CCeEEEeCCCChHHHHHHHh--CCCcEEEEecCHHHHHHHHH
Confidence            45899999999998888875  47899999999999999865

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.39  E-value=0.026  Score=56.42  Aligned_cols=100  Identities=14%  Similarity=0.138  Sum_probs=68.7

Q ss_pred             ChhhHHHHHHHHHhHh-cCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHH
Q 010968           57 DFNATRELTRVLLLHD-HGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGA  135 (496)
Q Consensus        57 d~~A~r~Lt~aLL~~f-fGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~  135 (496)
                      .++.+++|.++.+.+- =+-.+.++        |.-.   .++.-++...         ++.++||||+=+|.=++..|.
T Consensus        34 e~~~l~el~e~t~~~~~~~~~m~v~--------~d~g---~fl~~li~~~---------~ak~~lelGvfTGySaL~~Al   93 (237)
T KOG1663|consen   34 EPELLKELREATLTYPQPGSEMLVG--------PDKG---QFLQMLIRLL---------NAKRTLELGVFTGYSALAVAL   93 (237)
T ss_pred             CcHHHHHHHHHHhhcCCcccceecC--------hHHH---HHHHHHHHHh---------CCceEEEEecccCHHHHHHHH
Confidence            3567888888776664 12223343        2323   3444444431         346899999755544445555


Q ss_pred             Hhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          136 SLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       136 ~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      .+| +-+++++||++++.+++.+-++.-+ +..+|+++.++..
T Consensus        94 alp~dGrv~a~eid~~~~~~~~~~~k~ag-v~~KI~~i~g~a~  135 (237)
T KOG1663|consen   94 ALPEDGRVVAIEIDADAYEIGLELVKLAG-VDHKITFIEGPAL  135 (237)
T ss_pred             hcCCCceEEEEecChHHHHHhHHHHHhcc-ccceeeeeecchh
Confidence            666 5799999999999999999998884 8999999988743

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=96.36  E-value=0.017  Score=56.61  Aligned_cols=57  Identities=16%  Similarity=0.137  Sum_probs=43.8

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      +..+|||+|+|||..++..+ +.....++++||+|......+.|++.|+ +  .|.+...|
T Consensus        79 rgkrVLd~gagsgLvaIAaa-~aGA~~v~a~d~~P~~~~ai~lNa~ang-v--~i~~~~~d  135 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAA-RAGAAEVVAADIDPWLEQAIRLNAAANG-V--SILFTHAD  135 (218)
T ss_pred             ccceeeecccccChHHHHHH-HhhhHHHHhcCCChHHHHHhhcchhhcc-c--eeEEeecc
Confidence            35689999999997765443 2334589999999999999999999995 4  36665554

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=96.31  E-value=0.0097  Score=59.14  Aligned_cols=58  Identities=16%  Similarity=0.118  Sum_probs=51.7

Q ss_pred             CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+||||||.|--.+.+|.+.|++.++|+||....+..|.+-+...+ +. +|.++..|.
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~-l~-Nlri~~~DA  107 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG-LK-NLRLLCGDA  107 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC-CC-cEEEEcCCH
Confidence            57999999999998999999999999999999999999999998874 64 588888774

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=96.29  E-value=0.0047  Score=60.26  Aligned_cols=58  Identities=14%  Similarity=0.065  Sum_probs=46.6

Q ss_pred             CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCC
Q 010968          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE  178 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~  178 (496)
                      ....|+|+|||.++...+ +. .-+|+|+|.||.-.++|.+|+.-++ + +.++++.+|...
T Consensus        34 d~~~DLGaGsGiLs~~Aa-~~-A~rViAiE~dPk~a~~a~eN~~v~g-~-~n~evv~gDA~~   91 (252)
T COG4076          34 DTFADLGAGSGILSVVAA-HA-AERVIAIEKDPKRARLAEENLHVPG-D-VNWEVVVGDARD   91 (252)
T ss_pred             hceeeccCCcchHHHHHH-hh-hceEEEEecCcHHHHHhhhcCCCCC-C-cceEEEeccccc
Confidence            478999999997754443 33 4589999999999999999997774 4 569999998653

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=96.28  E-value=0.0073  Score=63.42  Aligned_cols=60  Identities=15%  Similarity=0.089  Sum_probs=51.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      +..|+|+=+|-|-+++.+|.. ...+|+|+||||.|+++.++|++.|+ ++++|+.+.+|..
T Consensus       189 GE~V~DmFAGVGpfsi~~Ak~-g~~~V~A~diNP~A~~~L~eNi~LN~-v~~~v~~i~gD~r  248 (341)
T COG2520         189 GETVLDMFAGVGPFSIPIAKK-GRPKVYAIDINPDAVEYLKENIRLNK-VEGRVEPILGDAR  248 (341)
T ss_pred             CCEEEEccCCcccchhhhhhc-CCceEEEEecCHHHHHHHHHHHHhcC-ccceeeEEeccHH
Confidence            458999999999998777654 33449999999999999999999995 9999999999854

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=96.05  E-value=0.16  Score=53.57  Aligned_cols=146  Identities=16%  Similarity=0.176  Sum_probs=94.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcC--CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLG--WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ  193 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~--~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~  193 (496)
                      ..+|||+|.+.|.=...|+....+  ..|+|+|+++.-++..++|+++.+ +.+ +.++..|...               
T Consensus       157 ge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG-~~n-v~~~~~d~~~---------------  219 (355)
T COG0144         157 GERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG-VRN-VIVVNKDARR---------------  219 (355)
T ss_pred             cCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC-CCc-eEEEeccccc---------------
Confidence            468999999999766667766654  667999999999999999999985 655 6666655321               


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcc
Q 010968          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (496)
Q Consensus       194 ~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Em  273 (496)
                                                            +.......++||-|++=||=-.+.- ...+|..-..-+...+
T Consensus       220 --------------------------------------~~~~~~~~~~fD~iLlDaPCSg~G~-irr~Pd~~~~~~~~~i  260 (355)
T COG0144         220 --------------------------------------LAELLPGGEKFDRILLDAPCSGTGV-IRRDPDVKWRRTPEDI  260 (355)
T ss_pred             --------------------------------------ccccccccCcCcEEEECCCCCCCcc-cccCccccccCCHHHH
Confidence                                                  0000111347999999999533221 2345555332222200


Q ss_pred             cccCchHHHHHHHHHHHHHhhcCCeEE---EEEeCCcCcHHHHHHHHHHc
Q 010968          274 VCSGGERAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKV  320 (496)
Q Consensus       274 v~~GGel~FI~riI~eS~~ll~~~gwf---tsmvGk~s~l~~L~~~L~~~  320 (496)
                         ..-..+=.+|++.+..+++++|.+   |+-+-...+-+-+...|++.
T Consensus       261 ---~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~  307 (355)
T COG0144         261 ---AELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERH  307 (355)
T ss_pred             ---HHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhC
Confidence               001234456888889998888865   44555566766777778776

>KOG2730 consensus Methylase [General function prediction only]

Probab=96.04  E-value=0.0036  Score=62.23  Aligned_cols=59  Identities=15%  Similarity=0.030  Sum_probs=48.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ...|+|.=||.|.-.+..+.+  ...|+++||||.-+.+|++|++-.| +.+||+|+++|..
T Consensus        95 ~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiYG-I~~rItFI~GD~l  153 (263)
T KOG2730|consen   95 AEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVYG-VPDRITFICGDFL  153 (263)
T ss_pred             cchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceeec-CCceeEEEechHH
Confidence            346888777777665666654  4589999999999999999999995 9999999999854

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=95.95  E-value=0.14  Score=51.49  Aligned_cols=59  Identities=14%  Similarity=0.118  Sum_probs=38.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE  178 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~  178 (496)
                      +.+||=||=+- .+++++|...+..+|+-+|||+..++.-++.+++.+ +.  |+.++.|...
T Consensus        45 gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~g-l~--i~~~~~DlR~  103 (243)
T PF01861_consen   45 GKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEG-LP--IEAVHYDLRD  103 (243)
T ss_dssp             T-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-----EEEE---TTS
T ss_pred             CCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcC-Cc--eEEEEecccc
Confidence            46799888654 566677766667899999999999999999999885 65  8988888653

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.90  E-value=0.018  Score=56.27  Aligned_cols=54  Identities=17%  Similarity=0.121  Sum_probs=45.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE  178 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~  178 (496)
                      ..+++|||.|+|..+..++.++|+++++..|. |+.++.|++        .+||+++.+|..+
T Consensus       101 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~--------~~rv~~~~gd~f~  154 (241)
T PF00891_consen  101 FKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE--------ADRVEFVPGDFFD  154 (241)
T ss_dssp             SSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH--------TTTEEEEES-TTT
T ss_pred             ccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc--------ccccccccccHHh
Confidence            35899999999999999999999999999999 888998888        3589999998753

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=95.65  E-value=0.031  Score=60.49  Aligned_cols=60  Identities=22%  Similarity=0.180  Sum_probs=49.7

Q ss_pred             CCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          114 GDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       114 ~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      +.++.+||||||+|.+..+.+ +-..-.++|+|+=.-+.++|++-..+|+ ..++|.++.-.
T Consensus        65 ~gkv~vLdigtGTGLLSmMAv-ragaD~vtA~EvfkPM~d~arkI~~kng-~SdkI~vInkr  124 (636)
T KOG1501|consen   65 IGKVFVLDIGTGTGLLSMMAV-RAGADSVTACEVFKPMVDLARKIMHKNG-MSDKINVINKR  124 (636)
T ss_pred             CceEEEEEccCCccHHHHHHH-HhcCCeEEeehhhchHHHHHHHHHhcCC-Cccceeeeccc
Confidence            456789999999998755444 4345579999999999999999999996 99999998654

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.60  E-value=0.0049  Score=61.71  Aligned_cols=41  Identities=20%  Similarity=0.222  Sum_probs=33.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHH
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN  158 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N  158 (496)
                      -.++||||||+|..+..|-..  -.+++|+|||+.||+.|.+.
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eK  166 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEK  166 (287)
T ss_pred             cceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhc
Confidence            568999999999887776322  24799999999999998764

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=95.42  E-value=0.2  Score=46.53  Aligned_cols=109  Identities=12%  Similarity=0.122  Sum_probs=65.7

Q ss_pred             eeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCC
Q 010968          141 SFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPA  220 (496)
Q Consensus       141 ~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~  220 (496)
                      +|+|.||+++|++.+++..+..+ +.++++++...                   +.+|+                     
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~-~~~~v~li~~s-------------------He~l~---------------------   39 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAG-LEDRVTLILDS-------------------HENLD---------------------   39 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT--GSGEEEEES--------------------GGGGG---------------------
T ss_pred             CEEEEECHHHHHHHHHHHHHhcC-CCCcEEEEECC-------------------HHHHH---------------------
Confidence            58999999999999999999985 88899998763                   11111                     


Q ss_pred             CCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEE
Q 010968          221 GAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWY  300 (496)
Q Consensus       221 ~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwf  300 (496)
                                   ..++ .+++|++|-|==|.+..              +.+++|.   -+=-..-++.+..+++++|..
T Consensus        40 -------------~~i~-~~~v~~~iFNLGYLPgg--------------Dk~i~T~---~~TTl~Al~~al~lL~~gG~i   88 (140)
T PF06962_consen   40 -------------EYIP-EGPVDAAIFNLGYLPGG--------------DKSITTK---PETTLKALEAALELLKPGGII   88 (140)
T ss_dssp             -------------GT---S--EEEEEEEESB-CTS---------------TTSB-----HHHHHHHHHHHHHHEEEEEEE
T ss_pred             -------------hhCc-cCCcCEEEEECCcCCCC--------------CCCCCcC---cHHHHHHHHHHHHhhccCCEE
Confidence                         1121 24899999999887743              3333332   111223456777889999998


Q ss_pred             EEEeCC--c---CcHHHHHHHHHHcC
Q 010968          301 TSMVGR--K---SNLKFLISKLRKVG  321 (496)
Q Consensus       301 tsmvGk--~---s~l~~L~~~L~~~g  321 (496)
                      +.++-.  .   .-.+.+.+.+....
T Consensus        89 ~iv~Y~GH~gG~eE~~av~~~~~~L~  114 (140)
T PF06962_consen   89 TIVVYPGHPGGKEESEAVEEFLASLD  114 (140)
T ss_dssp             EEEE--STCHHHHHHHHHHHHHHTS-
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhCC
Confidence            877742  1   22445666666644

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>TIGR00478 tly hemolysin TlyA family protein

Probab=95.37  E-value=0.024  Score=56.37  Aligned_cols=38  Identities=13%  Similarity=-0.003  Sum_probs=31.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHH
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEW  154 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~  154 (496)
                      ...+||+|||+|.+...|+.. ...+|+|+|+++.++..
T Consensus        76 ~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        76 NKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             CCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence            458999999999987777653 44689999999988866

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=95.06  E-value=0.061  Score=59.25  Aligned_cols=59  Identities=12%  Similarity=0.010  Sum_probs=49.8

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ....+||||||.|-....+|...|++.++|+|+....+..|.+.+...+ +. ++.++..+
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~-l~-N~~~~~~~  405 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN-IT-NFLLFPNN  405 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC-CC-eEEEEcCC
Confidence            3568999999999998999999999999999999999999988887764 64 46666554

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=95.02  E-value=0.44  Score=44.21  Aligned_cols=34  Identities=21%  Similarity=0.162  Sum_probs=25.0

Q ss_pred             EEecCcHHHHHHHHHHHHHCC-CCCCcEEEEEccC
Q 010968          143 VGSDMTDVALEWAEKNVKSNP-HISELIEIRKVDN  176 (496)
Q Consensus       143 ~avDIs~~AL~~A~~N~~~N~-~L~~rI~~v~~d~  176 (496)
                      +|+|+|+++|+.|+++.+... ....+|+++.+|.
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~   35 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDA   35 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEech
Confidence            489999999999987765321 1234689988874

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=95.02  E-value=0.047  Score=54.00  Aligned_cols=77  Identities=17%  Similarity=0.096  Sum_probs=57.0

Q ss_pred             HhHHHHHHHHhccCCCCCCCCCCC-CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEE
Q 010968           92 SNYIHWIEDLLSSNIIPTTSRNGD-KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIE  170 (496)
Q Consensus        92 ~nyi~wI~dlL~~~~i~~~~~~~~-~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~  170 (496)
                      +-|.+++.|.+...  +..   .. ..+++|||+|+|.=++-||-.+|+.+|+.+|-..+-+..-+.-.+..+ |+ +++
T Consensus        48 e~~~rHilDSl~~~--~~~---~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~-L~-nv~  120 (215)
T COG0357          48 ELWQRHILDSLVLL--PYL---DGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG-LE-NVE  120 (215)
T ss_pred             HHHHHHHHHHhhhh--hcc---cccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC-CC-CeE
Confidence            55666776666532  111   11 469999999999888888878899999999999988888877777664 54 488


Q ss_pred             EEEcc
Q 010968          171 IRKVD  175 (496)
Q Consensus       171 ~v~~d  175 (496)
                      ++++.
T Consensus       121 i~~~R  125 (215)
T COG0357         121 IVHGR  125 (215)
T ss_pred             Eehhh
Confidence            87664

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=94.74  E-value=0.19  Score=52.00  Aligned_cols=65  Identities=14%  Similarity=0.112  Sum_probs=53.9

Q ss_pred             CCCCCeEEEEcCchhHHHHHHHHHhcC--CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCC
Q 010968          113 NGDKVKGFDIGTGANCIYPLLGASLLG--WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE  178 (496)
Q Consensus       113 ~~~~~~vLDIGTGSG~I~ilLa~~~~~--~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~  178 (496)
                      .+++++||||.||.|---+-.....+.  .++...|.|+.+++..++-++.++ |++.++|.++|..+
T Consensus       133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g-L~~i~~f~~~dAfd  199 (311)
T PF12147_consen  133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG-LEDIARFEQGDAFD  199 (311)
T ss_pred             cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC-CccceEEEecCCCC
Confidence            357899999999999754444445565  699999999999999999999995 99888999999654

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=94.38  E-value=0.14  Score=53.36  Aligned_cols=40  Identities=15%  Similarity=0.016  Sum_probs=28.7

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHH
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWA  155 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A  155 (496)
                      +..+|||||||+|.-..-++.+ ....|+|+|-++..+...
T Consensus       115 ~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF  154 (315)
T PF08003_consen  115 KGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQF  154 (315)
T ss_pred             CCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHH
Confidence            3569999999999775555433 334799999887665543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=94.32  E-value=0.2  Score=52.57  Aligned_cols=155  Identities=17%  Similarity=0.228  Sum_probs=90.4

Q ss_pred             CCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHH
Q 010968           82 GQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVK  160 (496)
Q Consensus        82 g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~N~~  160 (496)
                      ...-|.+= --|+=.||..+|-....+      ....++|||||-|.=  ++.....+ -.++|+||.+.+++.|++-.+
T Consensus        91 Rq~S~Ii~-lRnfNNwIKs~LI~~y~~------~~~~~~~LgCGKGGD--LlKw~kAgI~~~igiDIAevSI~qa~~RYr  161 (389)
T KOG1975|consen   91 RQRSPIIF-LRNFNNWIKSVLINLYTK------RGDDVLDLGCGKGGD--LLKWDKAGIGEYIGIDIAEVSINQARKRYR  161 (389)
T ss_pred             hccCceee-hhhhhHHHHHHHHHHHhc------cccccceeccCCccc--HhHhhhhcccceEeeehhhccHHHHHHHHH
Confidence            34444432 246778888777432211      224689999999954  33222223 379999999999999998664


Q ss_pred             HCCCCCC----cEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 010968          161 SNPHISE----LIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVV  236 (496)
Q Consensus       161 ~N~~L~~----rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~  236 (496)
                      .-.+...    .+.++.+|-..                 .++                 .             +++.   
T Consensus       162 dm~~r~~~~~f~a~f~~~Dc~~-----------------~~l-----------------~-------------d~~e---  191 (389)
T KOG1975|consen  162 DMKNRFKKFIFTAVFIAADCFK-----------------ERL-----------------M-------------DLLE---  191 (389)
T ss_pred             HHHhhhhcccceeEEEEeccch-----------------hHH-----------------H-------------Hhcc---
Confidence            3211111    25666665321                 000                 0             0111   


Q ss_pred             CCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHH
Q 010968          237 RDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISK  316 (496)
Q Consensus       237 ~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~  316 (496)
                      .++++||+|=|-==|+=+           +.           ..+=.+.++..+...|++||.|.--   --+...|+..
T Consensus       192 ~~dp~fDivScQF~~HYa-----------Fe-----------tee~ar~~l~Nva~~LkpGG~FIgT---iPdsd~Ii~r  246 (389)
T KOG1975|consen  192 FKDPRFDIVSCQFAFHYA-----------FE-----------TEESARIALRNVAKCLKPGGVFIGT---IPDSDVIIKR  246 (389)
T ss_pred             CCCCCcceeeeeeeEeee-----------ec-----------cHHHHHHHHHHHHhhcCCCcEEEEe---cCcHHHHHHH
Confidence            124459999885333211           11           1122577888999999999986443   4467788888


Q ss_pred             HHHc
Q 010968          317 LRKV  320 (496)
Q Consensus       317 L~~~  320 (496)
                      |++.
T Consensus       247 lr~~  250 (389)
T KOG1975|consen  247 LRAG  250 (389)
T ss_pred             HHhc
Confidence            8875

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=94.28  E-value=0.97  Score=46.65  Aligned_cols=61  Identities=11%  Similarity=0.152  Sum_probs=53.2

Q ss_pred             CeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCC
Q 010968          117 VKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE  178 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~  178 (496)
                      ..|++-|||||.+...+++.. |--+++-.|+...-.+-|.+-.+.++ +.+.+++..-|++.
T Consensus       107 svV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg-i~~~vt~~hrDVc~  168 (314)
T KOG2915|consen  107 SVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG-IGDNVTVTHRDVCG  168 (314)
T ss_pred             CEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC-CCcceEEEEeeccc
Confidence            489999999999988888765 44689999999999999999999995 99999999998763

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=94.06  E-value=0.19  Score=51.68  Aligned_cols=62  Identities=16%  Similarity=0.067  Sum_probs=47.7

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC--CCCCcEEEEEccC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP--HISELIEIRKVDN  176 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~--~L~~rI~~v~~d~  176 (496)
                      ++.+||=||-|.|...-.+.+..+--+++.||||++.+++|++=.....  ..+.|++++..|.
T Consensus        76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg  139 (282)
T COG0421          76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDG  139 (282)
T ss_pred             CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccH
Confidence            3459999999999987777766556799999999999999998654221  1246888887774

>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]

Probab=94.05  E-value=0.07  Score=46.61  Aligned_cols=66  Identities=21%  Similarity=0.217  Sum_probs=38.7

Q ss_pred             cEEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeC-----CcCcHHHHHH
Q 010968          241 QFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVG-----RKSNLKFLIS  315 (496)
Q Consensus       241 ~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvG-----k~s~l~~L~~  315 (496)
                      +||+||.||||..............   .         ....+.-+++.+..++  .|.+.+.+.     .....+.+.+
T Consensus         2 kFD~VIGNPPY~~~~~~~~~~~~~~---~---------~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~   67 (106)
T PF07669_consen    2 KFDVVIGNPPYIKIKSLSKKKKKKK---K---------KSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRK   67 (106)
T ss_pred             CcCEEEECCCChhhccccchhhccc---c---------cCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHH
Confidence            5999999999998764322100000   0         3445677888888877  555544332     2344566666


Q ss_pred             HHHHc
Q 010968          316 KLRKV  320 (496)
Q Consensus       316 ~L~~~  320 (496)
                      .|-+.
T Consensus        68 ~l~~~   72 (106)
T PF07669_consen   68 FLLNN   72 (106)
T ss_pred             HHhcC
Confidence            66543

The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=93.98  E-value=0.045  Score=55.22  Aligned_cols=46  Identities=20%  Similarity=0.352  Sum_probs=37.5

Q ss_pred             CeEEEEcCchhH-HHHHHHHHhcC--CeeEEecCcHHHHHHHHHHHHHCC
Q 010968          117 VKGFDIGTGANC-IYPLLGASLLG--WSFVGSDMTDVALEWAEKNVKSNP  163 (496)
Q Consensus       117 ~~vLDIGTGSG~-I~ilLa~~~~~--~~v~avDIs~~AL~~A~~N~~~N~  163 (496)
                      .+||+||||.|- +.++|. ..++  ..++|+|-+|.|++.-++|...+.
T Consensus        73 ~~ilEvGCGvGNtvfPll~-~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e  121 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLK-TSPNNRLKVYACDFSPRAIELVKKSSGYDE  121 (264)
T ss_pred             hhheeeccCCCcccchhhh-cCCCCCeEEEEcCCChHHHHHHHhccccch
Confidence            379999999996 455554 4454  899999999999999999987763

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=93.91  E-value=0.087  Score=51.90  Aligned_cols=39  Identities=26%  Similarity=0.256  Sum_probs=33.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHH
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAE  156 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~  156 (496)
                      ..+||+.|||.|.-...|+.+  +++|+|+|+++.|++.|.
T Consensus        38 ~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~   76 (218)
T PF05724_consen   38 GGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAF   76 (218)
T ss_dssp             SEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHH
T ss_pred             CCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHH
Confidence            458999999999887777754  789999999999999983

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=93.76  E-value=0.072  Score=51.76  Aligned_cols=44  Identities=23%  Similarity=0.322  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCchh----HHHHHHHHHh---c--CCeeEEecCcHHHHHHHHHH
Q 010968          115 DKVKGFDIGTGAN----CIYPLLGASL---L--GWSFVGSDMTDVALEWAEKN  158 (496)
Q Consensus       115 ~~~~vLDIGTGSG----~I~ilLa~~~---~--~~~v~avDIs~~AL~~A~~N  158 (496)
                      .+.+|+..||+||    -|+++|....   .  .++++|+|||+.+|+.|++=
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G   83 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAG   83 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhC
Confidence            5689999999999    3554554422   2  36899999999999999864

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=93.72  E-value=0.045  Score=57.72  Aligned_cols=74  Identities=19%  Similarity=0.263  Sum_probs=44.6

Q ss_pred             EEecCCCeeCCCCCcHhHHHHHHH----Hhc------cCCCCCCCC-------------CCCCCeEEEEcCchhHHHHHH
Q 010968           77 WWIPDGQLCPTVPNRSNYIHWIED----LLS------SNIIPTTSR-------------NGDKVKGFDIGTGANCIYPLL  133 (496)
Q Consensus        77 ~~Vp~g~LiPrvP~R~nyi~wI~d----lL~------~~~i~~~~~-------------~~~~~~vLDIGTGSG~I~ilL  133 (496)
                      |.+.++ ++|.-|.+--+=+||.+    ++.      ...+..++-             -.....|.|==.|+|.+  ++
T Consensus       148 y~~~pn-~~p~~p~~IyFGr~ig~g~R~li~~y~LK~R~yiGnTSmDAeLSli~AN~Amv~pGdivyDPFVGTGsl--Lv  224 (421)
T KOG2671|consen  148 YELDPN-VGPEEPKKIYFGRLIGEGQRELIEKYDLKKRCYIGNTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSL--LV  224 (421)
T ss_pred             eccCCC-CCCCCcceeeehhhhccchHhHhhhcccccccccCCcccchhHHHHHhhhhccCCCCEEecCccccCce--ee
Confidence            444555 67777877777777753    221      112222210             01234688855555544  45


Q ss_pred             HHHhcCCeeEEecCcHHHHH
Q 010968          134 GASLLGWSFVGSDMTDVALE  153 (496)
Q Consensus       134 a~~~~~~~v~avDIs~~AL~  153 (496)
                      ++...++-|+|+|||-.++.
T Consensus       225 saa~FGa~viGtDIDyr~vr  244 (421)
T KOG2671|consen  225 SAAHFGAYVIGTDIDYRTVR  244 (421)
T ss_pred             ehhhhcceeeccccchheee
Confidence            55678899999999998887

>PRK11524 putative methyltransferase; Provisional

Probab=93.34  E-value=0.31  Score=49.52  Aligned_cols=72  Identities=14%  Similarity=0.131  Sum_probs=44.2

Q ss_pred             CCcEEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHH
Q 010968          239 GEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLR  318 (496)
Q Consensus       239 ~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~  318 (496)
                      +++||+|++||||..........+  .        +....-++++...+.++..+++++|.+.+.++ ...+..+ ..+.
T Consensus        25 ~~siDlIitDPPY~~~~~~~~~~~--~--------~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~-~~~~~~~-~~~~   92 (284)
T PRK11524         25 SESVDLIFADPPYNIGKNFDGLIE--A--------WKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS-TENMPFI-DLYC   92 (284)
T ss_pred             cCcccEEEECCCcccccccccccc--c--------ccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC-chhhhHH-HHHH
Confidence            568999999999975221111100  0        00011246678899999999999999877665 4444433 3444


Q ss_pred             HcCC
Q 010968          319 KVGV  322 (496)
Q Consensus       319 ~~g~  322 (496)
                      +.|+
T Consensus        93 ~~~f   96 (284)
T PRK11524         93 RKLF   96 (284)
T ss_pred             hcCc
Confidence            5555

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=93.24  E-value=0.22  Score=54.66  Aligned_cols=47  Identities=13%  Similarity=0.182  Sum_probs=35.8

Q ss_pred             CeEEEEcCchhHHHHHHHHHh----cCCeeEEecCcHHHHHHHHHHHHHCC
Q 010968          117 VKGFDIGTGANCIYPLLGASL----LGWSFVGSDMTDVALEWAEKNVKSNP  163 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~----~~~~v~avDIs~~AL~~A~~N~~~N~  163 (496)
                      ..+.|.+||||-.........    ....++|-++.+.+...|+.|...++
T Consensus       219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~  269 (501)
T TIGR00497       219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHN  269 (501)
T ss_pred             CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcC
Confidence            479999999998754333222    12469999999999999999987763

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=92.81  E-value=0.26  Score=52.50  Aligned_cols=61  Identities=18%  Similarity=0.248  Sum_probs=49.0

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCC-cEEEEEccC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISE-LIEIRKVDN  176 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~N~~~N~~L~~-rI~~v~~d~  176 (496)
                      .+.++||-=+|||.=++-++.+.++ .+|++-|||++|++..++|++.|+ +++ +|++.+.|.
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~-~~~~~~~v~~~DA  111 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNG-LEDERIEVSNMDA  111 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT--SGCCEEEEES-H
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcc-ccCceEEEehhhH
Confidence            3578999999999999999998765 689999999999999999999996 887 788887763

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=92.72  E-value=0.45  Score=46.63  Aligned_cols=44  Identities=18%  Similarity=0.206  Sum_probs=31.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCe-eEEecCcHHHHHHHHHHHH
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWS-FVGSDMTDVALEWAEKNVK  160 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~-v~avDIs~~AL~~A~~N~~  160 (496)
                      ....+|||||.|-+-...+. ..+++ .+|+|+.+...+.|+.+.+
T Consensus        43 ~dvF~DlGSG~G~~v~~aal-~~~~~~~~GIEi~~~~~~~a~~~~~   87 (205)
T PF08123_consen   43 DDVFYDLGSGVGNVVFQAAL-QTGCKKSVGIEILPELHDLAEELLE   87 (205)
T ss_dssp             T-EEEEES-TTSHHHHHHHH-HH--SEEEEEE-SHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHH-HcCCcEEEEEEechHHHHHHHHHHH
Confidence            35899999999987554444 44554 9999999999999987664

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=92.69  E-value=0.14  Score=50.82  Aligned_cols=48  Identities=19%  Similarity=0.294  Sum_probs=43.2

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN  162 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N  162 (496)
                      +++.+.|||||-|.+.+.|+-.+|+--++|.||-...-++-++-|+..
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~AL  107 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQAL  107 (249)
T ss_pred             ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHH
Confidence            568899999999999889998999999999999999999988887654

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.47  E-value=0.19  Score=47.64  Aligned_cols=82  Identities=18%  Similarity=0.191  Sum_probs=60.3

Q ss_pred             eeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC
Q 010968           84 LCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP  163 (496)
Q Consensus        84 LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~  163 (496)
                      -+|-||-+.+-+..+..++..         +.+.+.+|||+|-|-|-+..+ +..-..-+|+|.+|-.+.+++--+-+.+
T Consensus        50 cvPYVpAtteQv~nVLSll~~---------n~~GklvDlGSGDGRiVlaaa-r~g~~~a~GvELNpwLVaysrl~a~R~g  119 (199)
T KOG4058|consen   50 CVPYVPATTEQVENVLSLLRG---------NPKGKLVDLGSGDGRIVLAAA-RCGLRPAVGVELNPWLVAYSRLHAWRAG  119 (199)
T ss_pred             cccccCccHHHHHHHHHHccC---------CCCCcEEeccCCCceeehhhh-hhCCCcCCceeccHHHHHHHHHHHHHHh
Confidence            467778777777776666643         245789999999999844333 2223578999999999999999888874


Q ss_pred             CCCCcEEEEEccC
Q 010968          164 HISELIEIRKVDN  176 (496)
Q Consensus       164 ~L~~rI~~v~~d~  176 (496)
                       +..+..|+.-|.
T Consensus       120 -~~k~trf~Rkdl  131 (199)
T KOG4058|consen  120 -CAKSTRFRRKDL  131 (199)
T ss_pred             -cccchhhhhhhh
Confidence             777777766654

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=92.29  E-value=0.18  Score=51.45  Aligned_cols=44  Identities=16%  Similarity=0.140  Sum_probs=36.9

Q ss_pred             CCCeEEEEcCchh----HHHHHHHHHhc-----CCeeEEecCcHHHHHHHHHH
Q 010968          115 DKVKGFDIGTGAN----CIYPLLGASLL-----GWSFVGSDMTDVALEWAEKN  158 (496)
Q Consensus       115 ~~~~vLDIGTGSG----~I~ilLa~~~~-----~~~v~avDIs~~AL~~A~~N  158 (496)
                      +..+|.-.||+||    -|+++|....+     .++|+|+|||..+|+.|+.=
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G  148 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAG  148 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcC
Confidence            4789999999999    67777766654     47999999999999999853

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=92.21  E-value=0.9  Score=44.78  Aligned_cols=45  Identities=13%  Similarity=0.092  Sum_probs=39.7

Q ss_pred             eEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC
Q 010968          118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN  162 (496)
Q Consensus       118 ~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N  162 (496)
                      +||+||+|||-=+...+..+|..+..-+|+++..+..-+..+...
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~   72 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEA   72 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhc
Confidence            699999999998888999999999999999999987666666655

The function of this family is unknown.

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=91.76  E-value=0.36  Score=48.04  Aligned_cols=47  Identities=17%  Similarity=0.334  Sum_probs=36.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHC
Q 010968          116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSN  162 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N  162 (496)
                      ..+.||+|+|||.+....+...  ++...+|+|.-++.++.+++|+...
T Consensus        83 G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~  131 (237)
T KOG1661|consen   83 GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKD  131 (237)
T ss_pred             CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhh
Confidence            3579999999997765555332  3445599999999999999999864

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=91.70  E-value=0.53  Score=48.04  Aligned_cols=85  Identities=11%  Similarity=0.051  Sum_probs=51.8

Q ss_pred             hHHHHHHHHHhHhcCcE---EEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHH
Q 010968           60 ATRELTRVLLLHDHGLN---WWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGAS  136 (496)
Q Consensus        60 A~r~Lt~aLL~~ffGL~---~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~  136 (496)
                      -.+.+.+.+|..||..+   -.+..|..-=  =.++.+    ..+|......+. .+.+..++||||.|.|-+-..++..
T Consensus        43 l~~~l~~~~L~~f~S~T~iNG~LgRG~MFv--fS~~Q~----~~LL~~~~~~~~-~~~~~~~lLDlGAGdG~VT~~l~~~  115 (265)
T PF05219_consen   43 LWHSLASSILSWFMSKTDINGILGRGSMFV--FSEEQF----RKLLRISGFSWN-PDWKDKSLLDLGAGDGEVTERLAPL  115 (265)
T ss_pred             HHHHHHHHHHHHHHhHHhHhhhhcCCcEEE--ecHHHH----HHHhhhhccCCC-CcccCCceEEecCCCcHHHHHHHhh
Confidence            35788888999998763   2344443221  122333    334432211111 1124568999999999998877654


Q ss_pred             hcCCeeEEecCcHHHHH
Q 010968          137 LLGWSFVGSDMTDVALE  153 (496)
Q Consensus       137 ~~~~~v~avDIs~~AL~  153 (496)
                      +.  +|+++|+|+.|..
T Consensus       116 f~--~v~aTE~S~~Mr~  130 (265)
T PF05219_consen  116 FK--EVYATEASPPMRW  130 (265)
T ss_pred             cc--eEEeecCCHHHHH
Confidence            43  6999999998843

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=91.55  E-value=0.39  Score=48.77  Aligned_cols=48  Identities=15%  Similarity=0.140  Sum_probs=35.2

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSN  162 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~N~~~N  162 (496)
                      .+.+|||+|+|.|.-..++...++. .+++++|.|+.++++|+.-++..
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~   81 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG   81 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence            4678999999999643333223343 47999999999999998866543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=90.90  E-value=0.45  Score=44.76  Aligned_cols=41  Identities=22%  Similarity=0.246  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHH
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK  157 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~  157 (496)
                      .+..|||-=+|||-.  ++|+...+-+.+|+|++++.+++|++
T Consensus       191 ~gdiVlDpF~GSGTT--~~aa~~l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  191 PGDIVLDPFAGSGTT--AVAAEELGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             TT-EEEETT-TTTHH--HHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred             cceeeehhhhccChH--HHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence            346899999999976  45556677899999999999999975

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=90.63  E-value=0.54  Score=47.64  Aligned_cols=41  Identities=20%  Similarity=0.221  Sum_probs=32.2

Q ss_pred             eEEEEcCchhHHHHHHHHHhcCC-eeEEecCcHHHHHHHHHHHH
Q 010968          118 KGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVK  160 (496)
Q Consensus       118 ~vLDIGTGSG~I~ilLa~~~~~~-~v~avDIs~~AL~~A~~N~~  160 (496)
                      +++|+.||+|....  +.+..+. .+.++|+++.|++..+.|..
T Consensus         2 ~v~dLFsG~Gg~~~--gl~~~G~~~v~a~e~~~~a~~~~~~N~~   43 (275)
T cd00315           2 RVIDLFAGIGGFRL--GLEKAGFEIVAANEIDKSAAETYEANFP   43 (275)
T ss_pred             cEEEEccCcchHHH--HHHHcCCEEEEEEeCCHHHHHHHHHhCC
Confidence            68999999997744  4444455 46889999999999888863

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=90.39  E-value=1.5  Score=45.74  Aligned_cols=58  Identities=12%  Similarity=0.017  Sum_probs=49.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ...++|-=+|.|.=+..++..+++.+++|+|+|+.|++.|++..+..   .+++++++++.
T Consensus        21 ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~---~~R~~~i~~nF   78 (305)
T TIGR00006        21 DGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF---EGRVVLIHDNF   78 (305)
T ss_pred             CCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc---CCcEEEEeCCH
Confidence            35799999999988888887776789999999999999999988754   46899988864

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=89.82  E-value=0.87  Score=46.51  Aligned_cols=144  Identities=15%  Similarity=0.132  Sum_probs=92.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ...|||+|+|.|.=...++..+. ...++|.|+++.-+...+.|+++.+ +. .|.++..|...                
T Consensus        86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g-~~-~v~~~~~D~~~----------------  147 (283)
T PF01189_consen   86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG-VF-NVIVINADARK----------------  147 (283)
T ss_dssp             TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--S-SEEEEESHHHH----------------
T ss_pred             cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC-Cc-eEEEEeecccc----------------
Confidence            35799999999987777777665 5799999999999999999999985 54 46665554210                


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCccc-ccCCCCcccCCCCCcc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEE-AGLNPKTSCGGTPEEM  273 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~ee-a~~eP~~al~G~~~Em  273 (496)
                                                          +....  ....||.|+.-+|=  |... ...+|.....-... .
T Consensus       148 ------------------------------------~~~~~--~~~~fd~VlvDaPC--Sg~G~i~r~p~~~~~~~~~-~  186 (283)
T PF01189_consen  148 ------------------------------------LDPKK--PESKFDRVLVDAPC--SGLGTIRRNPDIKWRRSPE-D  186 (283)
T ss_dssp             ------------------------------------HHHHH--HTTTEEEEEEECSC--CCGGGTTTCTTHHHHE-TT-H
T ss_pred             ------------------------------------ccccc--cccccchhhcCCCc--cchhhhhhccchhhccccc-c
Confidence                                                00001  12369999999994  3332 12345432211111 0


Q ss_pred             cccCchHHH-HHHHHHHHHHhh----cCCeEE---EEEeCCcCcHHHHHHHHHHcC
Q 010968          274 VCSGGERAF-ITRIIEDSVALK----QTFRWY---TSMVGRKSNLKFLISKLRKVG  321 (496)
Q Consensus       274 v~~GGel~F-I~riI~eS~~ll----~~~gwf---tsmvGk~s~l~~L~~~L~~~g  321 (496)
                      +   -.+.. =.+|++.+..+.    +++|..   |+-+.+..+-.-+...|++..
T Consensus       187 ~---~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~  239 (283)
T PF01189_consen  187 I---EKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHP  239 (283)
T ss_dssp             H---HHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHST
T ss_pred             c---chHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCC
Confidence            0   02222 345888888888    777754   455666777777777788763

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PRK13699 putative methylase; Provisional

Probab=89.71  E-value=2.3  Score=42.08  Aligned_cols=76  Identities=13%  Similarity=0.340  Sum_probs=51.0

Q ss_pred             CCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHH
Q 010968          238 DGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKL  317 (496)
Q Consensus       238 ~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L  317 (496)
                      +++++|+|++=|||.-......  -+. ..+ ..       -.++....+.++.+.+++++++.+..+ ..+...+...+
T Consensus        17 pd~SVDLIiTDPPY~i~~~~~~--~~~-~~~-~~-------~~ew~~~~l~E~~RVLKpgg~l~if~~-~~~~~~~~~al   84 (227)
T PRK13699         17 PDNAVDFILTDPPYLVGFRDRQ--GRT-IAG-DK-------TDEWLQPACNEMYRVLKKDALMVSFYG-WNRVDRFMAAW   84 (227)
T ss_pred             CccccceEEeCCCcccccccCC--Ccc-ccc-cc-------HHHHHHHHHHHHHHHcCCCCEEEEEec-cccHHHHHHHH
Confidence            4678999999999974311100  000 011 11       347788899999998888888766555 45567788888


Q ss_pred             HHcCCeeE
Q 010968          318 RKVGVTIV  325 (496)
Q Consensus       318 ~~~g~~~v  325 (496)
                      ++.|+...
T Consensus        85 ~~~GF~l~   92 (227)
T PRK13699         85 KNAGFSVV   92 (227)
T ss_pred             HHCCCEEe
Confidence            89998543

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=89.58  E-value=0.72  Score=37.13  Aligned_cols=41  Identities=27%  Similarity=0.263  Sum_probs=30.0

Q ss_pred             EEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHH
Q 010968          119 GFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVK  160 (496)
Q Consensus       119 vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~N~~  160 (496)
                      ++|+|||+|... .+...... ..++|+|+++.++..++....
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAE   93 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhh
Confidence            999999999865 23222222 589999999999999665543

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=89.44  E-value=4.8  Score=40.19  Aligned_cols=67  Identities=21%  Similarity=0.221  Sum_probs=40.8

Q ss_pred             CCcEEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEE-EEEe-CCcCcHHHHHHH
Q 010968          239 GEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWY-TSMV-GRKSNLKFLISK  316 (496)
Q Consensus       239 ~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwf-tsmv-Gk~s~l~~L~~~  316 (496)
                      ++.+|++||-               +++-|+.            +..+|+|+.+.++.+|++ ..|| .+-.+.+..++.
T Consensus       120 ~~svDv~Vfc---------------LSLMGTn------------~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~  172 (219)
T PF05148_consen  120 DESVDVAVFC---------------LSLMGTN------------WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKA  172 (219)
T ss_dssp             TT-EEEEEEE---------------S---SS-------------HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHH
T ss_pred             CCceeEEEEE---------------hhhhCCC------------cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHH
Confidence            5789999974               2344544            567888999988888754 3455 444567777888


Q ss_pred             HHHcCCeeEEEEEecCCC
Q 010968          317 LRKVGVTIVKTTEFVQGQ  334 (496)
Q Consensus       317 L~~~g~~~vk~~ed~qG~  334 (496)
                      +...||....  +|.+..
T Consensus       173 ~~~~GF~~~~--~d~~n~  188 (219)
T PF05148_consen  173 LKKLGFKLKS--KDESNK  188 (219)
T ss_dssp             HHCTTEEEEE--EE--ST
T ss_pred             HHHCCCeEEe--cccCCC
Confidence            9999997544  455543

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=89.38  E-value=1.1  Score=45.92  Aligned_cols=85  Identities=20%  Similarity=0.127  Sum_probs=49.6

Q ss_pred             CCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHH--hcCCeeEEecCcHHHHHHHHHHHHHCCCCC
Q 010968           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGAS--LLGWSFVGSDMTDVALEWAEKNVKSNPHIS  166 (496)
Q Consensus        89 P~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~--~~~~~v~avDIs~~AL~~A~~N~~~N~~L~  166 (496)
                      |--.||+..+.--+.....  . ..+.+.+|+=||+|.=-+..++.++  .++..|+++|+|++|++.|++=++...+|+
T Consensus        97 pYy~nY~~L~~lE~~~l~~--~-~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~  173 (276)
T PF03059_consen   97 PYYPNYEKLVRLEYAALRI--H-AGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS  173 (276)
T ss_dssp             TTHHHHHHHHHHHHH-HTT-----TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-
T ss_pred             CcHHHHHHHHHHHHHHHhh--c-CCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc
Confidence            6678899888755432110  0 1123458999999975554444433  256889999999999999999887322488


Q ss_pred             CcEEEEEccC
Q 010968          167 ELIEIRKVDN  176 (496)
Q Consensus       167 ~rI~~v~~d~  176 (496)
                      .+++++.+|.
T Consensus       174 ~~m~f~~~d~  183 (276)
T PF03059_consen  174 KRMSFITADV  183 (276)
T ss_dssp             SSEEEEES-G
T ss_pred             CCeEEEecch
Confidence            9999998874

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=88.98  E-value=0.94  Score=47.38  Aligned_cols=45  Identities=13%  Similarity=0.138  Sum_probs=34.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh----cCCeeEEecCcHHHHHHHHHHHH
Q 010968          116 KVKGFDIGTGANCIYPLLGASL----LGWSFVGSDMTDVALEWAEKNVK  160 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~----~~~~v~avDIs~~AL~~A~~N~~  160 (496)
                      ...++|+|||+|-=-..|...+    ..+.++++|||.++|+.|..++.
T Consensus        77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~  125 (319)
T TIGR03439        77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELP  125 (319)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhh
Confidence            3479999999996333333333    24789999999999999999997

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=88.45  E-value=2.2  Score=45.33  Aligned_cols=51  Identities=16%  Similarity=0.180  Sum_probs=35.0

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ....+|||||++|.-.-.|..+  +.+|+|||..+-+     .++..+    .+|+.+..+.
T Consensus       211 ~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~-----~~L~~~----~~V~h~~~d~  261 (357)
T PRK11760        211 PGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMA-----QSLMDT----GQVEHLRADG  261 (357)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcC-----HhhhCC----CCEEEEeccC
Confidence            3468999999999876555543  6799999976522     223323    4688877764

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=88.13  E-value=0.94  Score=48.31  Aligned_cols=58  Identities=19%  Similarity=0.048  Sum_probs=49.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ..+++|-=+|||.=++-++.+.+..++++-||||+|++.+++|++.|. . ..+.+++.|
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~-~-~~~~v~n~D  110 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS-G-EDAEVINKD  110 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC-c-ccceeecch
Confidence            568999999999999999998887799999999999999999999983 2 345555544

>PRK11524 putative methyltransferase; Provisional

Probab=87.49  E-value=1.5  Score=44.55  Aligned_cols=45  Identities=13%  Similarity=0.079  Sum_probs=37.4

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHH
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS  161 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~  161 (496)
                      ....|||--+|||--  ++|+...+-+++|+||+++.+++|++-++.
T Consensus       208 ~GD~VLDPF~GSGTT--~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        208 PGDIVLDPFAGSFTT--GAVAKASGRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             CCCEEEECCCCCcHH--HHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence            456899999999976  455566688999999999999999988754

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=84.54  E-value=0.6  Score=39.68  Aligned_cols=55  Identities=22%  Similarity=0.171  Sum_probs=15.0

Q ss_pred             EEEcCchhHHHHHHHHHhcC---CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          120 FDIGTGANCIYPLLGASLLG---WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       120 LDIGTGSG~I~ilLa~~~~~---~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      |+|||..|.-...++.....   .+++++|..+. .+.++++++.. ++.++++++.++.
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~-~~~~~~~~~~g~s   58 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA-GLSDRVEFIQGDS   58 (106)
T ss_dssp             --------------------------EEEESS-------------G-GG-BTEEEEES-T
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhc-CCCCeEEEEEcCc
Confidence            68998888766666655443   37999999996 44555666555 3777899998873

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=82.69  E-value=1.1  Score=40.31  Aligned_cols=32  Identities=22%  Similarity=0.255  Sum_probs=23.4

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCc
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT  148 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs  148 (496)
                      .....+|||||.|.+--+|..  -+....|+|+-
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~--EGy~G~GiD~R   89 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNS--EGYPGWGIDAR   89 (112)
T ss_pred             CCCceEEccCCchHHHHHHHh--CCCCccccccc
Confidence            345799999999977555543  36677788874

; GO: 0008168 methyltransferase activity

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=81.38  E-value=0.95  Score=42.27  Aligned_cols=36  Identities=14%  Similarity=0.087  Sum_probs=28.1

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHH
Q 010968          115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDV  150 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~  150 (496)
                      +..++|||||+.|.-.-.+..+. +.++|+|+|+.+.
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            45799999999998866666554 4689999999875

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=80.87  E-value=1.8  Score=45.23  Aligned_cols=58  Identities=17%  Similarity=0.037  Sum_probs=44.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ...++|.=-|.|.-...++.++++.+++|+|.|++|++.|+++++..   .+++.++..+.
T Consensus        21 ~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~---~~r~~~~~~~F   78 (310)
T PF01795_consen   21 GGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF---DDRFIFIHGNF   78 (310)
T ss_dssp             T-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC---CTTEEEEES-G
T ss_pred             CceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc---cceEEEEeccH
Confidence            45899988899988888888888899999999999999998887643   47899998863

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=80.86  E-value=40  Score=33.46  Aligned_cols=154  Identities=15%  Similarity=0.133  Sum_probs=87.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ...|+|||+-.|.=.-.++.... +..|+|+||+|-.         .   . ..|.+++.|...  +.           +
T Consensus        46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~---------~---~-~~V~~iq~d~~~--~~-----------~   99 (205)
T COG0293          46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK---------P---I-PGVIFLQGDITD--ED-----------T   99 (205)
T ss_pred             CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc---------c---C-CCceEEeeeccC--cc-----------H
Confidence            45899999998876555554443 3569999999832         1   2 238888888652  00           0


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                      ..                                 .|...+  ....+|+|||-+ +          |++.-.-..++..
T Consensus       100 ~~---------------------------------~l~~~l--~~~~~DvV~sD~-a----------p~~~g~~~~Dh~r  133 (205)
T COG0293         100 LE---------------------------------KLLEAL--GGAPVDVVLSDM-A----------PNTSGNRSVDHAR  133 (205)
T ss_pred             HH---------------------------------HHHHHc--CCCCcceEEecC-C----------CCcCCCccccHHH
Confidence            00                                 122221  234579999654 1          1111000111000


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecCCCe---eEEEEEEeeCC
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQT---CRWGLAWSFVP  346 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t---~Rw~lAWsF~~  346 (496)
                          -.......++-+..++.++|-|..-+=+......++..+++. |..|++.+-...+.   -=++++|.|..
T Consensus       134 ----~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~-F~~v~~~KP~aSR~~S~E~y~v~~~~~~  203 (205)
T COG0293         134 ----SMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRL-FRKVKIFKPKASRKRSREIYLVAKGFKG  203 (205)
T ss_pred             ----HHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHh-hceeEEecCccccCCCceEEEEEecccc
Confidence                122223344445667788887766555567778888888763 66788777665553   34677777653

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=80.14  E-value=19  Score=37.42  Aligned_cols=42  Identities=21%  Similarity=0.333  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHhhcCC-eEEEEEeC-CcCcHHHHHHHHHHcCCee
Q 010968          283 ITRIIEDSVALKQTF-RWYTSMVG-RKSNLKFLISKLRKVGVTI  324 (496)
Q Consensus       283 I~riI~eS~~ll~~~-gwftsmvG-k~s~l~~L~~~L~~~g~~~  324 (496)
                      +..+|.|+.++++.+ .||..+|- +.+.....+..|...||..
T Consensus       243 ~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~  286 (325)
T KOG3045|consen  243 LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDV  286 (325)
T ss_pred             HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCee
Confidence            466777888766655 57778873 3334556777888899964

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	496
2h00_A	254	Human Methyltransferase 10 Domain Containing Protei		5e-48

>pdb|2H00|A Chain A, Human Methyltransferase 10 Domain Containing Protein Length = 254

Iteration: 1
 Score =  188 bits (478), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 116/305 (38%), Positives = 162/305 (53%), Gaps = 64/305 (20%)
Query: 49  GRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIP 108
           GR  +++ D  A R LT  LL  D GL+  IP  +L PTVP R NYIHW+EDL+      
Sbjct: 3   GRVSLNFKDPEAVRALTCTLLREDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQ--- 59
Query: 109 TTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL 168
             S      +G DIGTGA+CIYPLLGA+L GW F+ +++ D+   +A+KNV+ N ++S+L
Sbjct: 60  -DSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQN-NLSDL 117
Query: 169 IEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHG 228
           I++ KV         Q++L   ++++ES +                              
Sbjct: 118 IKVVKVP--------QKTLLMDALKEESEI------------------------------ 139
Query: 229 PPVLVGVVRDGEQFDFCICNPPFFESMEEA-GLN--------PKTSCGGTPEEMVCSGGE 279
                        +DFC+CNPPFF +  EA G+N        P +   G   E++  GGE
Sbjct: 140 ------------IYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGE 187
Query: 280 RAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWG 339
             F+ RII DS+ LK+  RWY+ M+G+K +L  L  +LR  GV  V  TEF QG+T RW 
Sbjct: 188 LEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEFCQGRTMRWA 247
Query: 340 LAWSF 344
           LAWSF
Sbjct: 248 LAWSF 252

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	496
2h00_A	254	Methyltransferase 10 domain containing protein; st	4e-78

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 Length = 254

 Score =  244 bits (623), Expect = 4e-78
 Identities = 110/305 (36%), Positives = 151/305 (49%), Gaps = 64/305 (20%)

Query: 49  GRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIP 108
           GR  +++ D  A R LT  LL  D GL+  IP  +L PTVP R NYIHW+EDL+      
Sbjct: 3   GRVSLNFKDPEAVRALTCTLLREDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSD 62

Query: 109 TTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL 168
                    +G DIGTGA+CIYPLLGA+L GW F+ +++ D+   +A+KNV+ N ++S+L
Sbjct: 63  ----KSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQN-NLSDL 117

Query: 169 IEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHG 228
           I++ K                     +  + M    +E                      
Sbjct: 118 IKVVK-------------------VPQKTLLMDALKEE---------------------- 136

Query: 229 PPVLVGVVRDGEQFDFCICNPPFFESMEEA---------GLNPKTSCGGTPEEMVCSGGE 279
                        +DFC+CNPPFF +  EA            P +   G   E++  GGE
Sbjct: 137 ---------SEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGE 187

Query: 280 RAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWG 339
             F+ RII DS+ LK+  RWY+ M+G+K +L  L  +LR  GV  V  TEF QG+T RW 
Sbjct: 188 LEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEFCQGRTMRWA 247

Query: 340 LAWSF 344
           LAWSF
Sbjct: 248 LAWSF 252

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	496
2h00_A	254	Methyltransferase 10 domain containing protein; st	100.0
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.94
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.93
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.93
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.88
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.71
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.71
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.64
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.58
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.53
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.53
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.52
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.52
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.5
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.49
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.45
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.45
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.44
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.44
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.44
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.43
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.42
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.41
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.41
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.41
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.41
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.4
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.39
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.38
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.37
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.37
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.37
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.37
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.37
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.36
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.36
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.36
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.35
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.35
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.33
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.32
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.31
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.31
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.3
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.3
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.29
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.29
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.28
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.27
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.27
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.27
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.27
3ocj_A	305	Putative exported protein; structural genomics, PS	99.27
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.26
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.26
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.25
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.25
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.25
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.25
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.24
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.24
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.23
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.23
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.22
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.21
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.2
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.2
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.19
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.19
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.19
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.18
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.17
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.17
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.16
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.15
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.15
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.15
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.14
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.14
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.13
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.13
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.13
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.12
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.12
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.12
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.12
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.12
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.1
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.1
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.1
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.09
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.09
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.09
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.08
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.08
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.08
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.08
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.07
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.07
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.07
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.07
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.06
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.06
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.06
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.06
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.05
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.04
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.04
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.03
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.02
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.02
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.02
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.02
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.0
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.0
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.0
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.0
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.99
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.99
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.99
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.99
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	98.98
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.98
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.97
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.97
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.97
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.97
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.97
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.97
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.96
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.96
3khk_A	544	Type I restriction-modification system methylation	98.96
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.96
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.96
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.96
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	98.96
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.96
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.95
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.95
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.95
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.95
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.95
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.94
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.94
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.94
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.93
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.93
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	98.93
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.93
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.93
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.93
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.92
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.92
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.91
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.91
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.91
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.91
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.91
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.9
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.9
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.9
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.9
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.9
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.89
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.89
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.89
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.88
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.88
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.88
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.87
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.86
2o07_A	304	Spermidine synthase; structural genomics, structur	98.86
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.86
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.86
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	98.85
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.85
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.85
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.85
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.85
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.84
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.83
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.83
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.83
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.83
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.82
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.82
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.82
3lkd_A	542	Type I restriction-modification system methyltrans	98.82
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.81
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.81
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.81
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.8
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.79
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.79
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.79
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.78
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.77
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.77
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.76
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.76
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.76
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.76
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.76
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.75
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.75
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.74
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.74
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.73
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.73
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.73
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.73
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.73
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.72
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.72
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.72
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.72
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.72
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.71
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.71
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.71
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.7
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.7
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.7
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.7
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.69
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.69
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.68
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.66
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.64
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.63
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.62
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.61
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.6
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.59
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.57
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.57
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.56
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.55
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.55
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.54
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.52
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.49
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.49
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.47
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.45
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.42
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.41
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.4
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.39
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.37
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.36
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.35
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.32
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.29
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.27
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.26
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.23
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.23
3ufb_A	530	Type I restriction-modification system methyltran	98.22
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.21
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.19
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.15
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.11
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.1
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.1
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.06
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.02
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	97.96
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	97.95
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	97.92
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	97.9
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	97.88
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	97.85
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	97.49
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.44
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	97.37
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	97.36
3sso_A	419	Methyltransferase; macrolide, natural product, ros	97.35
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.12
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.08
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.06
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	96.92
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	96.82
2zig_A	297	TTHA0409, putative modification methylase; methylt	96.71
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	96.66
2oo3_A	283	Protein involved in catabolism of external DNA; st	96.28
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	96.18
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	96.14
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	95.47
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	95.21
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	94.0
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	93.78
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	93.45
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	93.26
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	91.88
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	89.96
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	89.64
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	88.96
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	88.44
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	87.2
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	83.73
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	83.51
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	81.06
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	81.05

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=100.00  E-value=1.9e-37  Score=297.98  Aligned_cols=242  Identities=45%  Similarity=0.816  Sum_probs=194.8

Q ss_pred             CCCcceecCChhhHHHHHHHHHhHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchh
Q 010968           48 DGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGAN  127 (496)
Q Consensus        48 ~G~~~IDf~d~~A~r~Lt~aLL~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG  127 (496)
                      +|+.+|||+++++++.|+++++++|||++|.+++++|+|++|+|.++.+|+.+++...  +..  .....+|||||||+|
T Consensus         2 ~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~r~~~~~~~~~~~~~~--~~~--~~~~~~vLDlG~G~G   77 (254)
T 2h00_A            2 SGRVSLNFKDPEAVRALTCTLLREDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQ--DSD--KSTLRRGIDIGTGAS   77 (254)
T ss_dssp             ---CCSCTTSHHHHHHHHHHHHHHHHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCC--CGG--GCCCCEEEEESCTTT
T ss_pred             CcceEeecCChHHHHHHHHHHHHHcCCeeeecCccccCCCccchHHHHHHHHHHHhhc--ccc--CCCCCEEEEeCCChh
Confidence            4788999999999999999999999999999999999999999999999999998642  100  013468999999999


Q ss_pred             HHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCC
Q 010968          128 CIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEE  207 (496)
Q Consensus       128 ~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (496)
                      ++++.++.+.++++|+|+|+|+.+++.|++|++.++ +.++|+++.+|..+.                            
T Consensus        78 ~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~----------------------------  128 (254)
T 2h00_A           78 CIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNN-LSDLIKVVKVPQKTL----------------------------  128 (254)
T ss_dssp             THHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCTTCS----------------------------
T ss_pred             HHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcC-CCccEEEEEcchhhh----------------------------
Confidence            999999888888999999999999999999999985 888899998874210                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCccccccCC-CCcEEEEEECCCCccCccc---------ccCCCCcccCCCCCcccccC
Q 010968          208 AEPSSSSSFNLPAGAQSSYHGPPVLVGVVRD-GEQFDFCICNPPFFESMEE---------AGLNPKTSCGGTPEEMVCSG  277 (496)
Q Consensus       208 ~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~-~e~FDfImcNPPY~~s~ee---------a~~eP~~al~G~~~Emv~~G  277 (496)
                                             ++..+... +++||+|+|||||+...++         ..++|..++.+...+++.+|
T Consensus       129 -----------------------~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lkpg  185 (254)
T 2h00_A          129 -----------------------LMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEG  185 (254)
T ss_dssp             -----------------------STTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHH
T ss_pred             -----------------------hhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecC
Confidence                                   01011000 2579999999999976521         11357778888888999999


Q ss_pred             chHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecCCCeeEEEEEEeeC
Q 010968          278 GERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV  345 (496)
Q Consensus       278 Gel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t~Rw~lAWsF~  345 (496)
                      |++.|+.++++++..++.+++|+..+++....+..+.+.|++.|++.+++.++.+|++.||++||+|.
T Consensus       186 G~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~~~~g~~~~~~~~w~~~  253 (254)
T 2h00_A          186 GELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEFCQGRTMRWALAWSFY  253 (254)
T ss_dssp             THHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHHHHHTTCSEEEEEEEEETTEEEEEEEEESC
T ss_pred             CEEEEEHHHHHHHHhcccceEEEEECCCChhHHHHHHHHHHHcCCCceEEEEEecCCceEEEEEeecc
Confidence            99999999999988889999999999998888899999999999999999999999999999999996

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.94  E-value=1.1e-25  Score=211.79  Aligned_cols=216  Identities=18%  Similarity=0.260  Sum_probs=158.7

Q ss_pred             cceecCChhhHHHHHHHHHhHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCc-hhHH
Q 010968           51 PRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTG-ANCI  129 (496)
Q Consensus        51 ~~IDf~d~~A~r~Lt~aLL~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTG-SG~I  129 (496)
                      .++||++++++++++++++++|||..+++.+++++|++ .. +++ ++...+           ....+||||||| +|.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~-~~l-~~~~~~-----------~~~~~vLDlG~G~~G~~   70 (230)
T 3evz_A            5 GKLDFSNRQARILYNKAIAKALFGLDIEYHPKGLVTTP-IS-RYI-FLKTFL-----------RGGEVALEIGTGHTAMM   70 (230)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHCCCCCCCTTSCCCCH-HH-HHH-HHHTTC-----------CSSCEEEEECCTTTCHH
T ss_pred             ceeeecCHHHHHHHHHHHHHHhcCCceecCCCeEeCCC-ch-hhh-HhHhhc-----------CCCCEEEEcCCCHHHHH
Confidence            46899999999999999999999999999999999983 22 111 122111           124689999999 9999


Q ss_pred             HHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCC
Q 010968          130 YPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAE  209 (496)
Q Consensus       130 ~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a  209 (496)
                      +..++... +.+|+|+|+|+.+++.|++|++.++ +  +++++.+|...                               
T Consensus        71 ~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-~--~v~~~~~d~~~-------------------------------  115 (230)
T 3evz_A           71 ALMAEKFF-NCKVTATEVDEEFFEYARRNIERNN-S--NVRLVKSNGGI-------------------------------  115 (230)
T ss_dssp             HHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTT-C--CCEEEECSSCS-------------------------------
T ss_pred             HHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhC-C--CcEEEeCCchh-------------------------------
Confidence            88887765 8899999999999999999999985 5  68888887421                               


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHH
Q 010968          210 PSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIED  289 (496)
Q Consensus       210 ~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~e  289 (496)
                                            +..+  .+++||+|+|||||+...+....+|..++.++.+       +..++.+++++
T Consensus       116 ----------------------~~~~--~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~  164 (230)
T 3evz_A          116 ----------------------IKGV--VEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKY-------GEEFSVKLLEE  164 (230)
T ss_dssp             ----------------------STTT--CCSCEEEEEECCCCC---------------CCSS-------SCHHHHHHHHH
T ss_pred             ----------------------hhhc--ccCceeEEEECCCCcCCccccccChhhhhccCcc-------chHHHHHHHHH
Confidence                                  1111  1368999999999998776555677778877776       67888999999


Q ss_pred             HHHhhcCCeEEEEEeCC-cCcHHHHHHHHHHcCCeeEEEEEecCCCeeEEEEEEeeCCc
Q 010968          290 SVALKQTFRWYTSMVGR-KSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPP  347 (496)
Q Consensus       290 S~~ll~~~gwftsmvGk-~s~l~~L~~~L~~~g~~~vk~~ed~qG~t~Rw~lAWsF~~~  347 (496)
                      +..+++++|++.+.+.. ..+...+.+.+++.|+ .++.+++.+|+..+|+++|+-.++
T Consensus       165 ~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~g~~~~~~l~f~~~~~  222 (230)
T 3evz_A          165 AFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGY-SVKDIKFKVGTRWRHSLIFFKGIS  222 (230)
T ss_dssp             HGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTC-EEEEEEECCCC-CEEEEEEECCC-
T ss_pred             HHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCC-ceEEEEecCCCeEEEEEEEecccc
Confidence            99999999998776653 3678899999999999 577789999999999999876443

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.93  E-value=2.7e-25  Score=217.19  Aligned_cols=193  Identities=20%  Similarity=0.224  Sum_probs=164.0

Q ss_pred             HhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHH
Q 010968           71 HDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV  150 (496)
Q Consensus        71 ~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~  150 (496)
                      +|||+++.+++++|+|| |.++..+.++.+.+..          ...+|||||||+|+++..++...++++++|+|+|+.
T Consensus        76 ~f~~~~~~~~~~~~ipr-~~te~l~~~~l~~~~~----------~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~  144 (276)
T 2b3t_A           76 EFWSLPLFVSPATLIPR-PDTECLVEQALARLPE----------QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPD  144 (276)
T ss_dssp             EETTEEEECCTTSCCCC-TTHHHHHHHHHHHSCS----------SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHH
T ss_pred             EECCceEEeCCCCcccC-chHHHHHHHHHHhccc----------CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHH
Confidence            68999999999999999 7888888888776631          235899999999999999998888999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010968          151 ALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPP  230 (496)
Q Consensus       151 AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~  230 (496)
                      +++.|++|++.++ +. +++++.+|...                                                    
T Consensus       145 ~l~~a~~n~~~~~-~~-~v~~~~~d~~~----------------------------------------------------  170 (276)
T 2b3t_A          145 AVSLAQRNAQHLA-IK-NIHILQSDWFS----------------------------------------------------  170 (276)
T ss_dssp             HHHHHHHHHHHHT-CC-SEEEECCSTTG----------------------------------------------------
T ss_pred             HHHHHHHHHHHcC-CC-ceEEEEcchhh----------------------------------------------------
Confidence            9999999999885 64 68888776321                                                    


Q ss_pred             ccccccCCCCcEEEEEECCCCccCcc------cccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEe
Q 010968          231 VLVGVVRDGEQFDFCICNPPFFESME------EAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMV  304 (496)
Q Consensus       231 il~~v~~~~e~FDfImcNPPY~~s~e------ea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmv  304 (496)
                         .+  ..++||+|+|||||+...+      ...++|..++.|+.+       ++.++.++++++..+++++|++.+++
T Consensus       171 ---~~--~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~-------g~~~~~~~l~~~~~~LkpgG~l~~~~  238 (276)
T 2b3t_A          171 ---AL--AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADS-------GMADIVHIIEQSRNALVSGGFLLLEH  238 (276)
T ss_dssp             ---GG--TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHH-------HTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             ---hc--ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCc-------HHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence               11  1357999999999997654      123689999988776       88999999999999999999999998


Q ss_pred             CCcCcHHHHHHHHHHcCCeeEEEEEecCCCeeEEEEEE
Q 010968          305 GRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAW  342 (496)
Q Consensus       305 Gk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t~Rw~lAW  342 (496)
                      + ..+.+.+.+.+++.|+..+.+.+|..|+ .|+++|.
T Consensus       239 ~-~~~~~~~~~~l~~~Gf~~v~~~~d~~g~-~r~~~~~  274 (276)
T 2b3t_A          239 G-WQQGEAVRQAFILAGYHDVETCRDYGDN-ERVTLGR  274 (276)
T ss_dssp             C-SSCHHHHHHHHHHTTCTTCCEEECTTSS-EEEEEEE
T ss_pred             C-chHHHHHHHHHHHCCCcEEEEEecCCCC-CcEEEEE
Confidence            8 7889999999999999999999999998 6888875

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.93  E-value=1.8e-25  Score=222.07  Aligned_cols=185  Identities=19%  Similarity=0.273  Sum_probs=154.4

Q ss_pred             HhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHH
Q 010968           71 HDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV  150 (496)
Q Consensus        71 ~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~  150 (496)
                      +|||+.|.+.+++|+|| |+++.++.|+.+.+...         ...+|||||||+|++++.|+.. ++++|+|+|+|++
T Consensus        89 ~f~~~~~~v~~~~lipr-~~te~lv~~~l~~~~~~---------~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~  157 (284)
T 1nv8_A           89 EFMGLSFLVEEGVFVPR-PETEELVELALELIRKY---------GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSK  157 (284)
T ss_dssp             EETTEEEECCTTSCCCC-TTHHHHHHHHHHHHHHH---------TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHH
T ss_pred             EECCeEEEeCCCceecC-hhHHHHHHHHHHHhccc---------CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHH
Confidence            59999999999999999 88999999988877521         2358999999999999999988 8999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010968          151 ALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPP  230 (496)
Q Consensus       151 AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~  230 (496)
                      |++.|++|++.++ +.++|+++.+|..+                                                    
T Consensus       158 al~~A~~n~~~~~-l~~~v~~~~~D~~~----------------------------------------------------  184 (284)
T 1nv8_A          158 AVEIARKNAERHG-VSDRFFVRKGEFLE----------------------------------------------------  184 (284)
T ss_dssp             HHHHHHHHHHHTT-CTTSEEEEESSTTG----------------------------------------------------
T ss_pred             HHHHHHHHHHHcC-CCCceEEEECcchh----------------------------------------------------
Confidence            9999999999995 88889999887431                                                    


Q ss_pred             ccccccCCCCcE---EEEEECCCCccCccc----ccCCCCcccCCCCCcccccCchHHHHHHHH-HHHHHhhcCCeEEEE
Q 010968          231 VLVGVVRDGEQF---DFCICNPPFFESMEE----AGLNPKTSCGGTPEEMVCSGGERAFITRII-EDSVALKQTFRWYTS  302 (496)
Q Consensus       231 il~~v~~~~e~F---DfImcNPPY~~s~ee----a~~eP~~al~G~~~Emv~~GGel~FI~riI-~eS~~ll~~~gwfts  302 (496)
                      .+      .++|   |+|+|||||+...+.    ..++|..++.++.+       ++.|+++++ +    .++++||+.+
T Consensus       185 ~~------~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~d-------gl~~~~~i~~~----~l~pgG~l~~  247 (284)
T 1nv8_A          185 PF------KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGED-------GLDFYREFFGR----YDTSGKIVLM  247 (284)
T ss_dssp             GG------GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTT-------SCHHHHHHHHH----CCCTTCEEEE
T ss_pred             hc------ccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCc-------HHHHHHHHHHh----cCCCCCEEEE
Confidence            01      1357   999999999986541    12688899888887       788888887 4    5569999999


Q ss_pred             EeCCcCcHHHHHHHHHHcCCeeEEEEEecCCCeeEEEEEEe
Q 010968          303 MVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWS  343 (496)
Q Consensus       303 mvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t~Rw~lAWs  343 (496)
                      ++| ..+.+.+.+++++.     .+.+|+.|+ .|+++++.
T Consensus       248 e~~-~~q~~~v~~~~~~~-----~~~~D~~g~-~R~~~~~~  281 (284)
T 1nv8_A          248 EIG-EDQVEELKKIVSDT-----VFLKDSAGK-YRFLLLNR  281 (284)
T ss_dssp             ECC-TTCHHHHTTTSTTC-----EEEECTTSS-EEEEEEEC
T ss_pred             EEC-chHHHHHHHHHHhC-----CeecccCCC-ceEEEEEE
Confidence            999 78899999888775     789999999 58888753

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.88  E-value=1.8e-23  Score=191.92  Aligned_cols=196  Identities=18%  Similarity=0.194  Sum_probs=129.9

Q ss_pred             EEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHH
Q 010968           77 WWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAE  156 (496)
Q Consensus        77 ~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~  156 (496)
                      |.+++++++|+ |.+..++.|+.+.+...        ....+|||+|||+|.++..++...++++++|+|+|+.+++.|+
T Consensus         1 f~~~~~~~~p~-~~~~~~~~~~~~~l~~~--------~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~   71 (215)
T 4dzr_A            1 FEVGPDCLIPR-PDTEVLVEEAIRFLKRM--------PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVAR   71 (215)
T ss_dssp             CBCSGGGGSCC-HHHHHHHHHHHHHHTTC--------CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------
T ss_pred             CcCCCCccCCC-ccHHHHHHHHHHHhhhc--------CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHH
Confidence            46789999999 77888888888877531        1356899999999999999998888899999999999999999


Q ss_pred             HHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 010968          157 KNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVV  236 (496)
Q Consensus       157 ~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~  236 (496)
                      +|+..++ +  +++++.+|..+                                                    .+....
T Consensus        72 ~~~~~~~-~--~~~~~~~d~~~----------------------------------------------------~~~~~~   96 (215)
T 4dzr_A           72 RNAERFG-A--VVDWAAADGIE----------------------------------------------------WLIERA   96 (215)
T ss_dssp             --------------CCHHHHHH----------------------------------------------------HHHHHH
T ss_pred             HHHHHhC-C--ceEEEEcchHh----------------------------------------------------hhhhhh
Confidence            9998875 4  56666665320                                                    011000


Q ss_pred             CCCCcEEEEEECCCCccCcccc-------cCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeE-EEEEeCCcC
Q 010968          237 RDGEQFDFCICNPPFFESMEEA-------GLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRW-YTSMVGRKS  308 (496)
Q Consensus       237 ~~~e~FDfImcNPPY~~s~eea-------~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gw-ftsmvGk~s  308 (496)
                      ...++||+|+|||||+......       .++|..++.++..       ++.++.++++++..+++++|+ +.++++ ..
T Consensus        97 ~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~  168 (215)
T 4dzr_A           97 ERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGED-------GLQFYRRMAALPPYVLARGRAGVFLEVG-HN  168 (215)
T ss_dssp             HTTCCBSEEEECCCCCC------------------------C-------TTHHHHHHHTCCGGGBCSSSEEEEEECT-TS
T ss_pred             hccCcccEEEECCCCCCCccccccChhhhccCccccccCCCc-------HHHHHHHHHHHHHHHhcCCCeEEEEEEC-Cc
Confidence            0136899999999998765432       2467777777766       789999999999999999999 777777 78


Q ss_pred             cHHHHHHHHH--HcCCeeEEEEEecCCCeeEEEEEEeeC
Q 010968          309 NLKFLISKLR--KVGVTIVKTTEFVQGQTCRWGLAWSFV  345 (496)
Q Consensus       309 ~l~~L~~~L~--~~g~~~vk~~ed~qG~t~Rw~lAWsF~  345 (496)
                      +.+.+.+.++  +.|+..+.+.++..|+ .|++++|...
T Consensus       169 ~~~~~~~~l~~~~~gf~~~~~~~~~~~~-~r~~~~~~~~  206 (215)
T 4dzr_A          169 QADEVARLFAPWRERGFRVRKVKDLRGI-DRVIAVTREP  206 (215)
T ss_dssp             CHHHHHHHTGGGGGGTEECCEEECTTSC-EEEEEEEECC
T ss_pred             cHHHHHHHHHHhhcCCceEEEEEecCCC-EEEEEEEEcC
Confidence            8999999999  9999999999999998 7999998643

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.71  E-value=1.3e-16  Score=154.25  Aligned_cols=168  Identities=20%  Similarity=0.184  Sum_probs=112.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||||||+|.++..++.+.+ .+|+|+|+++.+++.|++|++.++ +.++|+++.+|..+                 
T Consensus        50 ~~~vLDlG~G~G~~~~~la~~~~-~~v~gvDi~~~~~~~a~~n~~~~~-~~~~v~~~~~D~~~-----------------  110 (259)
T 3lpm_A           50 KGKIIDLCSGNGIIPLLLSTRTK-AKIVGVEIQERLADMAKRSVAYNQ-LEDQIEIIEYDLKK-----------------  110 (259)
T ss_dssp             CCEEEETTCTTTHHHHHHHTTCC-CEEEEECCSHHHHHHHHHHHHHTT-CTTTEEEECSCGGG-----------------
T ss_pred             CCEEEEcCCchhHHHHHHHHhcC-CcEEEEECCHHHHHHHHHHHHHCC-CcccEEEEECcHHH-----------------
Confidence            45899999999999888877644 499999999999999999999995 88899999887431                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         +...+  ..++||+|+|||||+........+|.....-+..+   
T Consensus       111 -----------------------------------~~~~~--~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~---  150 (259)
T 3lpm_A          111 -----------------------------------ITDLI--PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHE---  150 (259)
T ss_dssp             -----------------------------------GGGTS--CTTCEEEEEECCCC------------------------
T ss_pred             -----------------------------------hhhhh--ccCCccEEEECCCCCCCccccCCCCchHHHhhhcc---
Confidence                                               00001  24689999999999986332222222221112221   


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEec---CCCe-eEEEEEEeeCCc
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFV---QGQT-CRWGLAWSFVPP  347 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~---qG~t-~Rw~lAWsF~~~  347 (496)
                         ...-+..+++.+..+++++|++.+.+. ..++..+...+++.|+...++ .++   .|+. .|.++.+.....
T Consensus       151 ---~~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~l~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~k~~~  221 (259)
T 3lpm_A          151 ---VMCTLEDTIRVAASLLKQGGKANFVHR-PERLLDIIDIMRKYRLEPKRI-QFVHPRSDREANTVLVEGIKDGK  221 (259)
T ss_dssp             -----HHHHHHHHHHHHHEEEEEEEEEEEC-TTTHHHHHHHHHHTTEEEEEE-EEEESSTTSCCSEEEEEEEETCC
T ss_pred             ---ccCCHHHHHHHHHHHccCCcEEEEEEc-HHHHHHHHHHHHHCCCceEEE-EEeecCCCCCcEEEEEEEEeCCC
Confidence               233467888999999999999877665 889999999999999865443 333   3444 566666665533

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.71  E-value=1.6e-16  Score=154.83  Aligned_cols=172  Identities=16%  Similarity=0.151  Sum_probs=115.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHH---CCCCCCcEEEEEccCCCCCCcccccccCCcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS---NPHISELIEIRKVDNSESTPSIQESLTGKSV  192 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~---N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~  192 (496)
                      ..+|||||||+|++++.|+.+.++.+++|+|+++++++.|++|++.   |+ +.++|+++.+|..+..+           
T Consensus        37 ~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~-l~~~v~~~~~D~~~~~~-----------  104 (260)
T 2ozv_A           37 ACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAA-FSARIEVLEADVTLRAK-----------  104 (260)
T ss_dssp             CEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTT-TGGGEEEEECCTTCCHH-----------
T ss_pred             CCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCC-CcceEEEEeCCHHHHhh-----------
Confidence            4589999999999999999888889999999999999999999998   85 88899999988542000           


Q ss_pred             ccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc-ccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCC
Q 010968          193 QDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVL-VGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPE  271 (496)
Q Consensus       193 ~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il-~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~  271 (496)
                                                           ... ..+  ..++||+|+|||||+.....  ..|.....-+.+
T Consensus       105 -------------------------------------~~~~~~~--~~~~fD~Vv~nPPy~~~~~~--~~~~~~~~~a~~  143 (260)
T 2ozv_A          105 -------------------------------------ARVEAGL--PDEHFHHVIMNPPYNDAGDR--RTPDALKAEAHA  143 (260)
T ss_dssp             -------------------------------------HHHHTTC--CTTCEEEEEECCCC--------------------
T ss_pred             -------------------------------------hhhhhcc--CCCCcCEEEECCCCcCCCCC--CCcCHHHHHHhh
Confidence                                                 000 001  24679999999999986421  112111111111


Q ss_pred             cccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecC--CCe-eEEEEEEeeCCcc
Q 010968          272 EMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQ--GQT-CRWGLAWSFVPPA  348 (496)
Q Consensus       272 Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~q--G~t-~Rw~lAWsF~~~~  348 (496)
                      +      ....+..+++.+..+++++|++.+.+. ..++..+.+.+++. +..+++.....  ++. .|.++.+......
T Consensus       144 ~------~~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~l~~~-~~~~~i~~v~~~~~~~~~~~lv~~~k~~~~  215 (260)
T 2ozv_A          144 M------TEGLFEDWIRTASAIMVSGGQLSLISR-PQSVAEIIAACGSR-FGGLEITLIHPRPGEDAVRMLVTAIKGSRA  215 (260)
T ss_dssp             ---------CCHHHHHHHHHHHEEEEEEEEEEEC-GGGHHHHHHHHTTT-EEEEEEEEEESSTTSCCCEEEEEEEETCCC
T ss_pred             c------CcCCHHHHHHHHHHHcCCCCEEEEEEc-HHHHHHHHHHHHhc-CCceEEEEEcCCCCCCceEEEEEEEeCCCC
Confidence            0      111257788888899999999987776 67899999999875 76666555433  333 5667777775543

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.64  E-value=3.1e-15  Score=136.36  Aligned_cols=155  Identities=18%  Similarity=0.164  Sum_probs=111.7

Q ss_pred             CCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHH
Q 010968           82 GQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS  161 (496)
Q Consensus        82 g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~  161 (496)
                      .+++|+ |.+...+.++... .          ....+|||||||+|.++..|+...   +++|+|+|+.|++.      .
T Consensus         2 ~v~~P~-~~~~~l~~~l~~~-~----------~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~------~   60 (170)
T 3q87_B            2 DWYEPG-EDTYTLMDALERE-G----------LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES------H   60 (170)
T ss_dssp             CSCCCC-HHHHHHHHHHHHH-T----------CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT------C
T ss_pred             cccCcC-ccHHHHHHHHHhh-c----------CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc------c
Confidence            478998 6665555553321 1          123489999999999988887654   99999999999987      2


Q ss_pred             CCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCc
Q 010968          162 NPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQ  241 (496)
Q Consensus       162 N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~  241 (496)
                           .+++++.+|...                                                       ..  ..++
T Consensus        61 -----~~~~~~~~d~~~-------------------------------------------------------~~--~~~~   78 (170)
T 3q87_B           61 -----RGGNLVRADLLC-------------------------------------------------------SI--NQES   78 (170)
T ss_dssp             -----SSSCEEECSTTT-------------------------------------------------------TB--CGGG
T ss_pred             -----cCCeEEECChhh-------------------------------------------------------hc--ccCC
Confidence                 246777776421                                                       00  1268


Q ss_pred             EEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcC
Q 010968          242 FDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVG  321 (496)
Q Consensus       242 FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g  321 (496)
                      ||+|+|||||+...+...      ..++.+       +..++.++++..     ++|++........+.+.+.+.+++.|
T Consensus        79 fD~i~~n~~~~~~~~~~~------~~~~~~-------~~~~~~~~~~~l-----pgG~l~~~~~~~~~~~~l~~~l~~~g  140 (170)
T 3q87_B           79 VDVVVFNPPYVPDTDDPI------IGGGYL-------GREVIDRFVDAV-----TVGMLYLLVIEANRPKEVLARLEERG  140 (170)
T ss_dssp             CSEEEECCCCBTTCCCTT------TBCCGG-------GCHHHHHHHHHC-----CSSEEEEEEEGGGCHHHHHHHHHHTT
T ss_pred             CCEEEECCCCccCCcccc------ccCCcc-------hHHHHHHHHhhC-----CCCEEEEEEecCCCHHHHHHHHHHCC
Confidence            999999999997543211      333333       567788777754     78887766655789999999999999


Q ss_pred             CeeEEEEEecCCCeeEE
Q 010968          322 VTIVKTTEFVQGQTCRW  338 (496)
Q Consensus       322 ~~~vk~~ed~qG~t~Rw  338 (496)
                      +..+.+.+...|.. |-
T Consensus       141 f~~~~~~~~~~~~e-~~  156 (170)
T 3q87_B          141 YGTRILKVRKILGE-TV  156 (170)
T ss_dssp             CEEEEEEEEECSSS-EE
T ss_pred             CcEEEEEeeccCCc-eE
Confidence            99999999988873 44

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.58  E-value=3.8e-14  Score=138.04  Aligned_cols=171  Identities=14%  Similarity=0.108  Sum_probs=128.4

Q ss_pred             HHhHhcCcEEEecCC--CeeCCCCCcHhHHHHHHH------------HhccCCCCCCCCCCCCCeEEEEcCchhHHHHHH
Q 010968           68 LLLHDHGLNWWIPDG--QLCPTVPNRSNYIHWIED------------LLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLL  133 (496)
Q Consensus        68 LL~~ffGL~~~Vp~g--~LiPrvP~R~nyi~wI~d------------lL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilL  133 (496)
                      ++-.+||..+.++++  +++|+ |+++.|...+..            ++...      .-....+|||+|||+|.++..+
T Consensus        58 i~g~~~g~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~~~~VLDiG~G~G~~~~~l  130 (277)
T 1o54_A           58 VFEKGPGEIIRTSAGKKGYILI-PSLIDEIMNMKRRTQIVYPKDSSFIAMML------DVKEGDRIIDTGVGSGAMCAVL  130 (277)
T ss_dssp             HTTSCTTCEEECTTCCEEEEEC-CCHHHHHHTCCC-CCCCCHHHHHHHHHHT------TCCTTCEEEEECCTTSHHHHHH
T ss_pred             hcCCCCCcEEEEcCCcEEEEeC-CCHHHHHhhccccCCccCHHHHHHHHHHh------CCCCCCEEEEECCcCCHHHHHH
Confidence            455689999999998  88999 777766643211            11100      0012458999999999999988


Q ss_pred             HHH-hcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCC
Q 010968          134 GAS-LLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSS  212 (496)
Q Consensus       134 a~~-~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  212 (496)
                      +.. .+..+++++|+++.+++.|++|++.++ +.++++++..|..+                                  
T Consensus       131 a~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~----------------------------------  175 (277)
T 1o54_A          131 ARAVGSSGKVFAYEKREEFAKLAESNLTKWG-LIERVTIKVRDISE----------------------------------  175 (277)
T ss_dssp             HHHTTTTCEEEEECCCHHHHHHHHHHHHHTT-CGGGEEEECCCGGG----------------------------------
T ss_pred             HHHhCCCcEEEEEECCHHHHHHHHHHHHHcC-CCCCEEEEECCHHH----------------------------------
Confidence            887 457899999999999999999999885 76778887765321                                  


Q ss_pred             CCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHH
Q 010968          213 SSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVA  292 (496)
Q Consensus       213 s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~  292 (496)
                                           .+  +.+.||+|++|||..                               ..++++...
T Consensus       176 ---------------------~~--~~~~~D~V~~~~~~~-------------------------------~~~l~~~~~  201 (277)
T 1o54_A          176 ---------------------GF--DEKDVDALFLDVPDP-------------------------------WNYIDKCWE  201 (277)
T ss_dssp             ---------------------CC--SCCSEEEEEECCSCG-------------------------------GGTHHHHHH
T ss_pred             ---------------------cc--cCCccCEEEECCcCH-------------------------------HHHHHHHHH
Confidence                                 01  135799999999732                               134455667


Q ss_pred             hhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecCCC
Q 010968          293 LKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQ  334 (496)
Q Consensus       293 ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~  334 (496)
                      +++++|++.+......++..+.+.|++.|+..+++.++..+.
T Consensus       202 ~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~  243 (277)
T 1o54_A          202 ALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVWESLFRP  243 (277)
T ss_dssp             HEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEEECCCCCC
T ss_pred             HcCCCCEEEEEeCCHHHHHHHHHHHHHCCCceeEEEEEeeee
Confidence            888999998888866788999999999999988888877544

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.53  E-value=7.7e-14  Score=127.84  Aligned_cols=146  Identities=10%  Similarity=0.048  Sum_probs=104.1

Q ss_pred             HhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHH
Q 010968           71 HDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV  150 (496)
Q Consensus        71 ~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~  150 (496)
                      .+.|..+.+|+  ..+| |.......++.+.+....      .....+|||+|||+|.++..++. .+..+|+|+|+|+.
T Consensus         9 ~~~g~~l~~~~--~~~r-p~~~~~~~~l~~~l~~~~------~~~~~~vLDlgcG~G~~~~~~~~-~~~~~v~~vD~~~~   78 (189)
T 3p9n_A            9 VAGGRRIAVPP--RGTR-PTTDRVRESLFNIVTARR------DLTGLAVLDLYAGSGALGLEALS-RGAASVLFVESDQR   78 (189)
T ss_dssp             TTTTCEEECCS--CCC----CHHHHHHHHHHHHHHS------CCTTCEEEEETCTTCHHHHHHHH-TTCSEEEEEECCHH
T ss_pred             ccCCcEecCCC--CCCc-cCcHHHHHHHHHHHHhcc------CCCCCEEEEeCCCcCHHHHHHHH-CCCCeEEEEECCHH
Confidence            46788999998  6677 677778888877775310      01345899999999999876654 35568999999999


Q ss_pred             HHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010968          151 ALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPP  230 (496)
Q Consensus       151 AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~  230 (496)
                      +++.|++|++.++ + ++++++.+|..+                                                    
T Consensus        79 ~~~~a~~~~~~~~-~-~~v~~~~~d~~~----------------------------------------------------  104 (189)
T 3p9n_A           79 SAAVIARNIEALG-L-SGATLRRGAVAA----------------------------------------------------  104 (189)
T ss_dssp             HHHHHHHHHHHHT-C-SCEEEEESCHHH----------------------------------------------------
T ss_pred             HHHHHHHHHHHcC-C-CceEEEEccHHH----------------------------------------------------
Confidence            9999999999985 6 679999887421                                                    


Q ss_pred             ccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHH--hhcCCeEEEEEeCCc
Q 010968          231 VLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVA--LKQTFRWYTSMVGRK  307 (496)
Q Consensus       231 il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~--ll~~~gwftsmvGk~  307 (496)
                      +....  ..++||+|+|||||....                         ..+.++++....  +++++|++.......
T Consensus       105 ~~~~~--~~~~fD~i~~~~p~~~~~-------------------------~~~~~~l~~~~~~~~L~pgG~l~~~~~~~  156 (189)
T 3p9n_A          105 VVAAG--TTSPVDLVLADPPYNVDS-------------------------ADVDAILAALGTNGWTREGTVAVVERATT  156 (189)
T ss_dssp             HHHHC--CSSCCSEEEECCCTTSCH-------------------------HHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred             HHhhc--cCCCccEEEECCCCCcch-------------------------hhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence            11111  146899999999986421                         224556666666  888999987776543

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.53  E-value=1.7e-14  Score=130.23  Aligned_cols=95  Identities=17%  Similarity=0.071  Sum_probs=78.5

Q ss_pred             hHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcH
Q 010968           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (496)
Q Consensus        70 ~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~  149 (496)
                      .+++|+.+.+|++. +|+ |....++.++.+.+...        ....+|||+|||+|.++..++. .+..+|+|+|+|+
T Consensus         9 g~~~~~~~~~~~~~-~~r-p~~~~~~~~~~~~l~~~--------~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~   77 (187)
T 2fhp_A            9 GEYGGRRLKALDGD-NTR-PTTDKVKESIFNMIGPY--------FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNF   77 (187)
T ss_dssp             STTTTCBCCCCCCC-SSC-CCCHHHHHHHHHHHCSC--------CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCH
T ss_pred             ccccCccccCCCCC-CcC-cCHHHHHHHHHHHHHhh--------cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCH
Confidence            46789999999887 888 78888999888888531        1245899999999999877665 4557999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          150 VALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       150 ~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      .+++.|++|++.++ +.++++++.+|.
T Consensus        78 ~~~~~a~~~~~~~~-~~~~~~~~~~d~  103 (187)
T 2fhp_A           78 AALKVIKENIAITK-EPEKFEVRKMDA  103 (187)
T ss_dssp             HHHHHHHHHHHHHT-CGGGEEEEESCH
T ss_pred             HHHHHHHHHHHHhC-CCcceEEEECcH
Confidence            99999999999885 777899998873

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.52  E-value=3.2e-13  Score=138.66  Aligned_cols=157  Identities=14%  Similarity=0.111  Sum_probs=111.6

Q ss_pred             CCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCc
Q 010968           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL  168 (496)
Q Consensus        89 P~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~r  168 (496)
                      |-++.....+..+. .         ....++||+|||+|.+.+.++...+..+++|+|+|+.+++.|++|++.++ +.++
T Consensus       201 ~l~~~la~~l~~~~-~---------~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~g-l~~~  269 (373)
T 3tm4_A          201 HLKASIANAMIELA-E---------LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAG-VLDK  269 (373)
T ss_dssp             CCCHHHHHHHHHHH-T---------CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTT-CGGG
T ss_pred             CccHHHHHHHHHhh-c---------CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC-CCCc
Confidence            33555555555554 2         12457999999999998888766544599999999999999999999995 8788


Q ss_pred             EEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEEC
Q 010968          169 IEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN  248 (496)
Q Consensus       169 I~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcN  248 (496)
                      |+++.+|..+                                                    +    ....+.||+|+||
T Consensus       270 i~~~~~D~~~----------------------------------------------------~----~~~~~~fD~Ii~n  293 (373)
T 3tm4_A          270 IKFIQGDATQ----------------------------------------------------L----SQYVDSVDFAISN  293 (373)
T ss_dssp             CEEEECCGGG----------------------------------------------------G----GGTCSCEEEEEEE
T ss_pred             eEEEECChhh----------------------------------------------------C----CcccCCcCEEEEC
Confidence            9999887431                                                    0    0123679999999


Q ss_pred             CCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEE
Q 010968          249 PPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTT  328 (496)
Q Consensus       249 PPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~  328 (496)
                      |||.......           ..       -..++.+++++....+  ++|......   +...+.+.+.+.|+...+..
T Consensus       294 pPyg~r~~~~-----------~~-------~~~ly~~~~~~l~r~l--~g~~~~i~~---~~~~~~~~~~~~G~~~~~~~  350 (373)
T 3tm4_A          294 LPYGLKIGKK-----------SM-------IPDLYMKFFNELAKVL--EKRGVFITT---EKKAIEEAIAENGFEIIHHR  350 (373)
T ss_dssp             CCCC-----------------CC-------HHHHHHHHHHHHHHHE--EEEEEEEES---CHHHHHHHHHHTTEEEEEEE
T ss_pred             CCCCcccCcc-----------hh-------HHHHHHHHHHHHHHHc--CCeEEEEEC---CHHHHHHHHHHcCCEEEEEE
Confidence            9997532111           00       2355788888887766  555544443   56677778889999988888


Q ss_pred             EecCCCe
Q 010968          329 EFVQGQT  335 (496)
Q Consensus       329 ed~qG~t  335 (496)
                      ....|.-
T Consensus       351 ~~~nG~l  357 (373)
T 3tm4_A          351 VIGHGGL  357 (373)
T ss_dssp             EEEETTE
T ss_pred             EEEcCCE
Confidence            8888874

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.52  E-value=1.3e-13  Score=129.03  Aligned_cols=165  Identities=12%  Similarity=0.136  Sum_probs=116.3

Q ss_pred             CCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHH
Q 010968           81 DGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVK  160 (496)
Q Consensus        81 ~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~  160 (496)
                      +.+++|+ |+. ....|.+ ++..          ...+|||||||+|+++..++...|+++++|+|+++.+++.|++|++
T Consensus        20 ~~~~~~~-p~~-~~~~~~~-~f~~----------~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~   86 (214)
T 1yzh_A           20 PQYVVLN-PLE-AKAKWRD-LFGN----------DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVL   86 (214)
T ss_dssp             TTTEECC-GGG-TTTTHHH-HHTS----------CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEecC-hhh-cccCHHH-HcCC----------CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHH
Confidence            5678887 442 2235543 3321          2458999999999999999988889999999999999999999999


Q ss_pred             HCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCC
Q 010968          161 SNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGE  240 (496)
Q Consensus       161 ~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e  240 (496)
                      .++ + .+|+++.+|...                                                     +.... ..+
T Consensus        87 ~~~-~-~~v~~~~~d~~~-----------------------------------------------------~~~~~-~~~  110 (214)
T 1yzh_A           87 EVG-V-PNIKLLWVDGSD-----------------------------------------------------LTDYF-EDG  110 (214)
T ss_dssp             HHC-C-SSEEEEECCSSC-----------------------------------------------------GGGTS-CTT
T ss_pred             HcC-C-CCEEEEeCCHHH-----------------------------------------------------HHhhc-CCC
Confidence            885 6 579998887431                                                     00000 235


Q ss_pred             cEEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHc
Q 010968          241 QFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKV  320 (496)
Q Consensus       241 ~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~  320 (496)
                      .||+|+||+|--..  ...++++.                .....++++...+++++|++.+..........+.+.+.+.
T Consensus       111 ~~D~i~~~~~~~~~--~~~~~~~~----------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  172 (214)
T 1yzh_A          111 EIDRLYLNFSDPWP--KKRHEKRR----------------LTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQY  172 (214)
T ss_dssp             CCSEEEEESCCCCC--SGGGGGGS----------------TTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcc--ccchhhhc----------------cCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHC
Confidence            79999999873110  00111111                1145677777788999999888776556678888999999


Q ss_pred             CCeeEEEEEecC
Q 010968          321 GVTIVKTTEFVQ  332 (496)
Q Consensus       321 g~~~vk~~ed~q  332 (496)
                      |+..+.+..|+.
T Consensus       173 g~~~~~~~~d~~  184 (214)
T 1yzh_A          173 GMKLNGVWLDLH  184 (214)
T ss_dssp             TCEEEEEESSGG
T ss_pred             CCeeeecccccc
Confidence            998777766653

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.50  E-value=2.7e-13  Score=137.27  Aligned_cols=163  Identities=17%  Similarity=0.116  Sum_probs=114.8

Q ss_pred             CCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCC
Q 010968           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISE  167 (496)
Q Consensus        89 P~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~  167 (496)
                      |-++++...+..++..         .....+||+|||+|.+.+.++... ++.+++|+|+|+.+++.|++|++.++ +. 
T Consensus       186 ~l~~~la~~l~~~~~~---------~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g-~~-  254 (354)
T 3tma_A          186 SLTPVLAQALLRLADA---------RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASG-LS-  254 (354)
T ss_dssp             SCCHHHHHHHHHHTTC---------CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTT-CT-
T ss_pred             CcCHHHHHHHHHHhCC---------CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcC-CC-
Confidence            4555665555555432         124589999999999988888777 78999999999999999999999985 76 


Q ss_pred             cEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEE
Q 010968          168 LIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCIC  247 (496)
Q Consensus       168 rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImc  247 (496)
                      +|+++..|..+                                                    +    ....+.||+|+|
T Consensus       255 ~i~~~~~D~~~----------------------------------------------------~----~~~~~~~D~Ii~  278 (354)
T 3tma_A          255 WIRFLRADARH----------------------------------------------------L----PRFFPEVDRILA  278 (354)
T ss_dssp             TCEEEECCGGG----------------------------------------------------G----GGTCCCCSEEEE
T ss_pred             ceEEEeCChhh----------------------------------------------------C----ccccCCCCEEEE
Confidence            89998887431                                                    0    001245899999


Q ss_pred             CCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEE
Q 010968          248 NPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKT  327 (496)
Q Consensus       248 NPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~  327 (496)
                      ||||......            ..      .-..++..++++...+++++|.+......   ...+...++ .|+...+.
T Consensus       279 npPyg~r~~~------------~~------~~~~~~~~~~~~~~~~LkpgG~l~i~t~~---~~~~~~~~~-~g~~~~~~  336 (354)
T 3tma_A          279 NPPHGLRLGR------------KE------GLFHLYWDFLRGALALLPPGGRVALLTLR---PALLKRALP-PGFALRHA  336 (354)
T ss_dssp             CCCSCC----------------CH------HHHHHHHHHHHHHHHTSCTTCEEEEEESC---HHHHHHHCC-TTEEEEEE
T ss_pred             CCCCcCccCC------------cc------cHHHHHHHHHHHHHHhcCCCcEEEEEeCC---HHHHHHHhh-cCcEEEEE
Confidence            9999643211            01      13567888999999888888887666652   233444444 88887777


Q ss_pred             EEecCCCeeEEEE
Q 010968          328 TEFVQGQTCRWGL  340 (496)
Q Consensus       328 ~ed~qG~t~Rw~l  340 (496)
                      .....|...+.++
T Consensus       337 ~~l~~g~l~~~i~  349 (354)
T 3tma_A          337 RVVEQGGVYPRVF  349 (354)
T ss_dssp             EECCBTTBCCEEE
T ss_pred             EEEEeCCEEEEEE
Confidence            7777887655443

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.49  E-value=1e-12  Score=118.10  Aligned_cols=161  Identities=20%  Similarity=0.210  Sum_probs=115.5

Q ss_pred             EEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHH
Q 010968           76 NWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWA  155 (496)
Q Consensus        76 ~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A  155 (496)
                      .+..+.+...|+..  .....++.+.+..         ....+|||+|||+|.+...++..  +.+++|+|+++.+++.|
T Consensus        24 ~~~~~~~~~~~~~~--~~~~~~l~~~~~~---------~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a   90 (194)
T 1dus_A           24 KFKTDSGVFSYGKV--DKGTKILVENVVV---------DKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLA   90 (194)
T ss_dssp             EEEEETTSTTTTSC--CHHHHHHHHHCCC---------CTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHH
T ss_pred             EEEeCCCcCCcccc--chHHHHHHHHccc---------CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHH
Confidence            34567777777632  2334444455432         13458999999999998777665  78999999999999999


Q ss_pred             HHHHHHCCCCCC-cEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 010968          156 EKNVKSNPHISE-LIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVG  234 (496)
Q Consensus       156 ~~N~~~N~~L~~-rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~  234 (496)
                      ++|+..++ +.+ +++++..|..+                                                    .+  
T Consensus        91 ~~~~~~~~-~~~~~~~~~~~d~~~----------------------------------------------------~~--  115 (194)
T 1dus_A           91 KENIKLNN-LDNYDIRVVHSDLYE----------------------------------------------------NV--  115 (194)
T ss_dssp             HHHHHHTT-CTTSCEEEEECSTTT----------------------------------------------------TC--
T ss_pred             HHHHHHcC-CCccceEEEECchhc----------------------------------------------------cc--
Confidence            99999885 654 69998876431                                                    00  


Q ss_pred             ccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHH
Q 010968          235 VVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLI  314 (496)
Q Consensus       235 v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~  314 (496)
                         ..++||+|+|||||...                         ......++++...+++++|++............+.
T Consensus       116 ---~~~~~D~v~~~~~~~~~-------------------------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~  167 (194)
T 1dus_A          116 ---KDRKYNKIITNPPIRAG-------------------------KEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLA  167 (194)
T ss_dssp             ---TTSCEEEEEECCCSTTC-------------------------HHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHH
T ss_pred             ---ccCCceEEEECCCcccc-------------------------hhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHH
Confidence               13579999999999641                         22356677788888899999877776566677788


Q ss_pred             HHHHHcCCeeEEEEEecCC
Q 010968          315 SKLRKVGVTIVKTTEFVQG  333 (496)
Q Consensus       315 ~~L~~~g~~~vk~~ed~qG  333 (496)
                      +.+++. +..++++....|
T Consensus       168 ~~l~~~-~~~~~~~~~~~~  185 (194)
T 1dus_A          168 KYMKDV-FGNVETVTIKGG  185 (194)
T ss_dssp             HHHHHH-HSCCEEEEEETT
T ss_pred             HHHHHH-hcceEEEecCCc
Confidence            888887 556666665444

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.45  E-value=3e-13  Score=131.32  Aligned_cols=123  Identities=18%  Similarity=0.163  Sum_probs=97.8

Q ss_pred             CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccccc
Q 010968          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDES  196 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~  196 (496)
                      .+|+|||||||+|++.++...+..+|+|+|+++.|++.|++|++.|+ +.++|+++.+|..                   
T Consensus        17 ~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g-l~~~i~~~~~d~l-------------------   76 (225)
T 3kr9_A           17 AILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHG-LKEKIQVRLANGL-------------------   76 (225)
T ss_dssp             EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-CTTTEEEEECSGG-------------------
T ss_pred             CEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CCceEEEEECchh-------------------
Confidence            58999999999999999887777899999999999999999999995 9889999988742                   


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccccc
Q 010968          197 NMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCS  276 (496)
Q Consensus       197 ~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~  276 (496)
                                                          .++. ..++||+|+..          +                .
T Consensus        77 ------------------------------------~~l~-~~~~~D~Ivia----------G----------------~   93 (225)
T 3kr9_A           77 ------------------------------------AAFE-ETDQVSVITIA----------G----------------M   93 (225)
T ss_dssp             ------------------------------------GGCC-GGGCCCEEEEE----------E----------------E
T ss_pred             ------------------------------------hhcc-cCcCCCEEEEc----------C----------------C
Confidence                                                1111 12258977720          1                1


Q ss_pred             CchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEE
Q 010968          277 GGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVK  326 (496)
Q Consensus       277 GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk  326 (496)
                        +-..+.+|++++...+.+++|+..  ....+...+.+.|.+.||..+.
T Consensus        94 --Gg~~i~~Il~~~~~~L~~~~~lVl--q~~~~~~~vr~~L~~~Gf~i~~  139 (225)
T 3kr9_A           94 --GGRLIARILEEGLGKLANVERLIL--QPNNREDDLRIWLQDHGFQIVA  139 (225)
T ss_dssp             --CHHHHHHHHHHTGGGCTTCCEEEE--EESSCHHHHHHHHHHTTEEEEE
T ss_pred             --ChHHHHHHHHHHHHHhCCCCEEEE--ECCCCHHHHHHHHHHCCCEEEE
Confidence              224589999999988889999643  3357899999999999987554

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.45  E-value=2.8e-13  Score=120.13  Aligned_cols=90  Identities=13%  Similarity=0.125  Sum_probs=71.4

Q ss_pred             hHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcH
Q 010968           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (496)
Q Consensus        70 ~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~  149 (496)
                      -.++|..+.++++   ++ |....+..++.+.+... +      ....+|||+|||+|.++..++...  .+++|+|+|+
T Consensus         7 g~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~-~------~~~~~vLD~GcG~G~~~~~l~~~~--~~v~~vD~~~   73 (171)
T 1ws6_A            7 GKARGVALKVPAS---AR-PSPVRLRKALFDYLRLR-Y------PRRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDP   73 (171)
T ss_dssp             GGGTTCEECCCTT---CC-CCCHHHHHHHHHHHHHH-C------TTCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCH
T ss_pred             cccCCeEecCCCC---CC-CCHHHHHHHHHHHHHhh-c------cCCCeEEEeCCCcCHHHHHHHHCC--CeEEEEeCCH
Confidence            4688999999999   66 66778888877777531 0      024589999999999988887653  4599999999


Q ss_pred             HHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          150 VALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       150 ~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      .+++.|++|++.++ +  +++++.+|
T Consensus        74 ~~~~~a~~~~~~~~-~--~~~~~~~d   96 (171)
T 1ws6_A           74 EAVRLLKENVRRTG-L--GARVVALP   96 (171)
T ss_dssp             HHHHHHHHHHHHHT-C--CCEEECSC
T ss_pred             HHHHHHHHHHHHcC-C--ceEEEecc
Confidence            99999999999885 5  68887765

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.44  E-value=6.7e-13  Score=119.61  Aligned_cols=87  Identities=11%  Similarity=0.001  Sum_probs=59.1

Q ss_pred             EEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHH
Q 010968           77 WWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAE  156 (496)
Q Consensus        77 ~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~  156 (496)
                      +..|++ .+|| |.......++.+.+...        ....+|||+|||+|.++..++.. +..+++|+|+|+.+++.|+
T Consensus         3 l~~p~~-~~~r-p~~~~~~~~~~~~l~~~--------~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~   71 (177)
T 2esr_A            3 LKTLDG-KITR-PTSDKVRGAIFNMIGPY--------FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQ   71 (177)
T ss_dssp             -----------------CHHHHHHHHCSC--------CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHH
T ss_pred             ccCCCC-CCCC-cCHHHHHHHHHHHHHhh--------cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHH
Confidence            345544 5777 67777788888777531        13458999999999998877765 5579999999999999999


Q ss_pred             HHHHHCCCCCCcEEEEEcc
Q 010968          157 KNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       157 ~N~~~N~~L~~rI~~v~~d  175 (496)
                      +|++.++ +.++++++.+|
T Consensus        72 ~~~~~~~-~~~~~~~~~~d   89 (177)
T 2esr_A           72 DNIIMTK-AENRFTLLKME   89 (177)
T ss_dssp             HHHHTTT-CGGGEEEECSC
T ss_pred             HHHHHcC-CCCceEEEECc
Confidence            9999885 77789988776

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.44  E-value=1.4e-13  Score=131.91  Aligned_cols=47  Identities=26%  Similarity=0.255  Sum_probs=42.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHH--hcCCeeEEecCcHHHHHHHHHHHHHC
Q 010968          116 KVKGFDIGTGANCIYPLLGAS--LLGWSFVGSDMTDVALEWAEKNVKSN  162 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~--~~~~~v~avDIs~~AL~~A~~N~~~N  162 (496)
                      ..+|||+|||+|.++..++..  .++++|+|+|+|+.+++.|++|+..+
T Consensus        52 ~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~  100 (250)
T 1o9g_A           52 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALL  100 (250)
T ss_dssp             CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTT
T ss_pred             CCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHh
Confidence            468999999999999888877  56789999999999999999999876

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.44  E-value=1.2e-12  Score=132.93  Aligned_cols=172  Identities=13%  Similarity=0.157  Sum_probs=114.7

Q ss_pred             cCcEEEecCCCeeCC--CCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHH
Q 010968           73 HGLNWWIPDGQLCPT--VPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV  150 (496)
Q Consensus        73 fGL~~~Vp~g~LiPr--vP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~  150 (496)
                      .|++|.+++..--.+  .|.......|+.+++...        +...+|||+|||+|.+++.++..  +++|+|+|+|+.
T Consensus       117 ~g~~f~v~~~~~~~tg~f~dq~~~~~~l~~~~~~~--------~~~~~VLDlgcGtG~~sl~la~~--ga~V~~VD~s~~  186 (332)
T 2igt_A          117 LGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAVETA--------DRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKK  186 (332)
T ss_dssp             TTEEEEEECCSSSCCSCCGGGHHHHHHHHHHHHHS--------SSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHH
T ss_pred             CCEEEEEecCccccceechHHHHHHHHHHHHHHhc--------CCCCcEEEcccccCHHHHHHHHc--CCEEEEEECCHH
Confidence            577777776544444  345566667787777421        13458999999999998887763  559999999999


Q ss_pred             HHHHHHHHHHHCCCCCC-cEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010968          151 ALEWAEKNVKSNPHISE-LIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP  229 (496)
Q Consensus       151 AL~~A~~N~~~N~~L~~-rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~  229 (496)
                      |++.|++|++.|+ +.+ +++++.+|..+                                                   
T Consensus       187 al~~a~~n~~~~g-l~~~~v~~i~~D~~~---------------------------------------------------  214 (332)
T 2igt_A          187 AIGWAKENQVLAG-LEQAPIRWICEDAMK---------------------------------------------------  214 (332)
T ss_dssp             HHHHHHHHHHHHT-CTTSCEEEECSCHHH---------------------------------------------------
T ss_pred             HHHHHHHHHHHcC-CCccceEEEECcHHH---------------------------------------------------
Confidence            9999999999985 766 58988776321                                                   


Q ss_pred             CccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcC-
Q 010968          230 PVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKS-  308 (496)
Q Consensus       230 ~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s-  308 (496)
                       ++.......++||+|+||||||......             ++.   .....+.++++.+..+++++|++.+...... 
T Consensus       215 -~l~~~~~~~~~fD~Ii~dPP~~~~~~~~-------------~~~---~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~  277 (332)
T 2igt_A          215 -FIQREERRGSTYDIILTDPPKFGRGTHG-------------EVW---QLFDHLPLMLDICREILSPKALGLVLTAYSIR  277 (332)
T ss_dssp             -HHHHHHHHTCCBSEEEECCCSEEECTTC-------------CEE---EHHHHHHHHHHHHHHTBCTTCCEEEEEECCTT
T ss_pred             -HHHHHHhcCCCceEEEECCccccCCchH-------------HHH---HHHHHHHHHHHHHHHhcCcCcEEEEEECCCCC
Confidence             1111000135799999999988643110             000   1345678889999999999998655554222 


Q ss_pred             -cHHHHHHHHH----HcCCe
Q 010968          309 -NLKFLISKLR----KVGVT  323 (496)
Q Consensus       309 -~l~~L~~~L~----~~g~~  323 (496)
                       ....+.+.++    +.|..
T Consensus       278 ~~~~~~~~~l~~a~~~~g~~  297 (332)
T 2igt_A          278 ASFYSMHELMRETMRGAGGV  297 (332)
T ss_dssp             SCHHHHHHHHHHHTTTSCSE
T ss_pred             CCHHHHHHHHHHHHHHcCCe
Confidence             3444555554    45653

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.43  E-value=1.3e-12  Score=134.70  Aligned_cols=121  Identities=17%  Similarity=0.140  Sum_probs=89.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCC--cEEEEEccCCCCCCcccccccCCccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISE--LIEIRKVDNSESTPSIQESLTGKSVQ  193 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~--rI~~v~~d~~~~~p~~~~~~~~~~~~  193 (496)
                      ..+|||||||+|.+++.++...|+.+|+|+|+|+.+++.|++|++.|+ +.+  +++++.+|..+               
T Consensus       223 ~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ng-l~~~~~v~~~~~D~~~---------------  286 (375)
T 4dcm_A          223 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNM-PEALDRCEFMINNALS---------------  286 (375)
T ss_dssp             CSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHC-GGGGGGEEEEECSTTT---------------
T ss_pred             CCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcC-CCcCceEEEEechhhc---------------
Confidence            368999999999999999988889999999999999999999999985 664  47777776421               


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcc
Q 010968          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (496)
Q Consensus       194 ~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Em  273 (496)
                                                              .+  ..++||+|+|||||+......           .   
T Consensus       287 ----------------------------------------~~--~~~~fD~Ii~nppfh~~~~~~-----------~---  310 (375)
T 4dcm_A          287 ----------------------------------------GV--EPFRFNAVLCNPPFHQQHALT-----------D---  310 (375)
T ss_dssp             ----------------------------------------TC--CTTCEEEEEECCCC------------------C---
T ss_pred             ----------------------------------------cC--CCCCeeEEEECCCcccCcccC-----------H---
Confidence                                                    11  246899999999997532110           0   


Q ss_pred             cccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHH
Q 010968          274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLIS  315 (496)
Q Consensus       274 v~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~  315 (496)
                             ....++++++..+++++|++.+...+........+
T Consensus       311 -------~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~  345 (375)
T 4dcm_A          311 -------NVAWEMFHHARRCLKINGELYIVANRHLDYFHKLK  345 (375)
T ss_dssp             -------CHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHH
T ss_pred             -------HHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHH
Confidence                   11346788888889999998777665555554443

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.42  E-value=7.2e-13  Score=130.23  Aligned_cols=123  Identities=17%  Similarity=0.148  Sum_probs=98.3

Q ss_pred             CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccccc
Q 010968          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDES  196 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~  196 (496)
                      .+|||||||+|+|++.|+...+..+|+|+|||+.|++.|++|++.|+ +.++|+++.+|..                   
T Consensus        23 ~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g-l~~~I~v~~gD~l-------------------   82 (244)
T 3gnl_A           23 ERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSG-LTEQIDVRKGNGL-------------------   82 (244)
T ss_dssp             EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-CTTTEEEEECSGG-------------------
T ss_pred             CEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CCceEEEEecchh-------------------
Confidence            58999999999999999887677799999999999999999999995 9889999988743                   


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccccc
Q 010968          197 NMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCS  276 (496)
Q Consensus       197 ~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~  276 (496)
                                                          .++ .++++||+|+.          ++                 
T Consensus        83 ------------------------------------~~~-~~~~~~D~Ivi----------ag-----------------   98 (244)
T 3gnl_A           83 ------------------------------------AVI-EKKDAIDTIVI----------AG-----------------   98 (244)
T ss_dssp             ------------------------------------GGC-CGGGCCCEEEE----------EE-----------------
T ss_pred             ------------------------------------hcc-CccccccEEEE----------eC-----------------
Confidence                                                111 11235998883          11                 


Q ss_pred             CchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEE
Q 010968          277 GGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVK  326 (496)
Q Consensus       277 GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk  326 (496)
                       -+-..+.+|++++...+++++|+  .+........+.+.|.+.||..+.
T Consensus        99 -mGg~lI~~IL~~~~~~L~~~~~l--Ilq~~~~~~~lr~~L~~~Gf~i~~  145 (244)
T 3gnl_A           99 -MGGTLIRTILEEGAAKLAGVTKL--ILQPNIAAWQLREWSEQNNWLITS  145 (244)
T ss_dssp             -ECHHHHHHHHHHTGGGGTTCCEE--EEEESSCHHHHHHHHHHHTEEEEE
T ss_pred             -CchHHHHHHHHHHHHHhCCCCEE--EEEcCCChHHHHHHHHHCCCEEEE
Confidence             12367899999999888888886  344467899999999999997544

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.41  E-value=1.1e-12  Score=127.84  Aligned_cols=124  Identities=15%  Similarity=0.149  Sum_probs=97.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|+|||||||+|++.|+...+..+|+|+||++.+++.|++|++.|+ +.++|+++.+|..+                 
T Consensus        22 g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~g-l~~~I~~~~gD~l~-----------------   83 (230)
T 3lec_A           22 GARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHG-LTSKIDVRLANGLS-----------------   83 (230)
T ss_dssp             TEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTT-CTTTEEEEECSGGG-----------------
T ss_pred             CCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECchhh-----------------
Confidence            358999999999999999887677799999999999999999999995 99999999987431                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                            ++ .++++||+|+.          ++                
T Consensus        84 --------------------------------------~~-~~~~~~D~Ivi----------aG----------------   98 (230)
T 3lec_A           84 --------------------------------------AF-EEADNIDTITI----------CG----------------   98 (230)
T ss_dssp             --------------------------------------GC-CGGGCCCEEEE----------EE----------------
T ss_pred             --------------------------------------cc-ccccccCEEEE----------eC----------------
Confidence                                                  11 11236998772          11                


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEE
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVK  326 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk  326 (496)
                       . +-..+.+|+++....++++++|  .+..-.....+.+.|.+.||..+.
T Consensus        99 -m-Gg~lI~~IL~~~~~~l~~~~~l--Ilqp~~~~~~lr~~L~~~Gf~i~~  145 (230)
T 3lec_A           99 -M-GGRLIADILNNDIDKLQHVKTL--VLQPNNREDDLRKWLAANDFEIVA  145 (230)
T ss_dssp             -E-CHHHHHHHHHHTGGGGTTCCEE--EEEESSCHHHHHHHHHHTTEEEEE
T ss_pred             -C-chHHHHHHHHHHHHHhCcCCEE--EEECCCChHHHHHHHHHCCCEEEE
Confidence             1 2267889999988888888885  333356799999999999997554

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.41  E-value=3.2e-12  Score=118.13  Aligned_cols=127  Identities=13%  Similarity=0.031  Sum_probs=101.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||||||+|.++..++...+..+++|+|+|+++++.|++|++.++ + ++++++.+|..+                 
T Consensus        41 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~-----------------  101 (204)
T 3e05_A           41 DLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFV-A-RNVTLVEAFAPE-----------------  101 (204)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHT-C-TTEEEEECCTTT-----------------
T ss_pred             CCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-C-CcEEEEeCChhh-----------------
Confidence            458999999999999999888778999999999999999999999885 6 679998887431                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         .+    ...+.||+|++++++.                  +    
T Consensus       102 -----------------------------------~~----~~~~~~D~i~~~~~~~------------------~----  120 (204)
T 3e05_A          102 -----------------------------------GL----DDLPDPDRVFIGGSGG------------------M----  120 (204)
T ss_dssp             -----------------------------------TC----TTSCCCSEEEESCCTT------------------C----
T ss_pred             -----------------------------------hh----hcCCCCCEEEECCCCc------------------C----
Confidence                                               01    0125699999998762                  1    


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEe
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEF  330 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed  330 (496)
                             +..++++...+++++|++........+...+.+.+++.|+ .+.+.+.
T Consensus       121 -------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~  167 (204)
T 3e05_A          121 -------LEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGY-MVEVACV  167 (204)
T ss_dssp             -------HHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTC-EEEEEEE
T ss_pred             -------HHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCC-ceeEEEE
Confidence                   3467777788899999987776556788999999999998 5555443

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.41  E-value=6.1e-12  Score=115.20  Aligned_cols=116  Identities=12%  Similarity=0.053  Sum_probs=86.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|||+|||+|.++..++... +..+++|+|+++.+++.|++|++.++ +..+++++.+|...                
T Consensus        23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~----------------   85 (197)
T 3eey_A           23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN-LIDRVTLIKDGHQN----------------   85 (197)
T ss_dssp             TCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTT-CGGGEEEECSCGGG----------------
T ss_pred             CCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCeEEEECCHHH----------------
Confidence            3589999999999988888776 56799999999999999999999985 77789998876321                


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                          + ...  ..++||+|+|||||++.......         .    
T Consensus        86 ------------------------------------~-~~~--~~~~fD~v~~~~~~~~~~~~~~~---------~----  113 (197)
T 3eey_A           86 ------------------------------------M-DKY--IDCPVKAVMFNLGYLPSGDHSIS---------T----  113 (197)
T ss_dssp             ------------------------------------G-GGT--CCSCEEEEEEEESBCTTSCTTCB---------C----
T ss_pred             ------------------------------------H-hhh--ccCCceEEEEcCCcccCcccccc---------c----
Confidence                                                0 001  13689999999999764321110         0    


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEEEEEe
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWYTSMV  304 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwftsmv  304 (496)
                          ...-..+++++...+++++|++....
T Consensus       114 ----~~~~~~~~l~~~~~~Lk~gG~l~~~~  139 (197)
T 3eey_A          114 ----RPETTIQALSKAMELLVTGGIITVVI  139 (197)
T ss_dssp             ----CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ----CcccHHHHHHHHHHhCcCCCEEEEEE
Confidence                12234557788888899999886654

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.41  E-value=2.7e-12  Score=134.37  Aligned_cols=91  Identities=13%  Similarity=0.105  Sum_probs=73.0

Q ss_pred             CcEEEecCCCeeCCC-CCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHH
Q 010968           74 GLNWWIPDGQLCPTV-PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL  152 (496)
Q Consensus        74 GL~~~Vp~g~LiPrv-P~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL  152 (496)
                      |++|.++++.++|.. +.++.++.++.+.+..         ....+|||+|||+|.+++.|+..  ..+|+|+|+|++|+
T Consensus       253 g~~~~~~~~~f~q~n~~~~e~l~~~~~~~l~~---------~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al  321 (433)
T 1uwv_A          253 GLRLTFSPRDFIQVNAGVNQKMVARALEWLDV---------QPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALV  321 (433)
T ss_dssp             TEEEECCSSSCCCSBHHHHHHHHHHHHHHHTC---------CTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHH
T ss_pred             CEEEEECcccccccCHHHHHHHHHHHHHhhcC---------CCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHH
Confidence            899999999999952 2345566666666542         12358999999999999888765  67999999999999


Q ss_pred             HHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          153 EWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       153 ~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      +.|++|++.|+ +. +++++.+|..
T Consensus       322 ~~A~~n~~~~~-~~-~v~f~~~d~~  344 (433)
T 1uwv_A          322 EKGQQNARLNG-LQ-NVTFYHENLE  344 (433)
T ss_dssp             HHHHHHHHHTT-CC-SEEEEECCTT
T ss_pred             HHHHHHHHHcC-CC-ceEEEECCHH
Confidence            99999999985 65 7999988753

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.40  E-value=3.4e-12  Score=132.10  Aligned_cols=152  Identities=15%  Similarity=0.182  Sum_probs=105.4

Q ss_pred             EEEecCCCeeCCC--CCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHH
Q 010968           76 NWWIPDGQLCPTV--PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALE  153 (496)
Q Consensus        76 ~~~Vp~g~LiPrv--P~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~  153 (496)
                      .+...+++....-  |.+..++.++.+.+...       .....+|||+|||+|.++..++..  +.+|+|+|+|+.+++
T Consensus       199 ~~~~~pgvFs~~~~d~~t~~ll~~l~~~l~~~-------~~~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~  269 (381)
T 3dmg_A          199 TFHHLPGVFSAGKVDPASLLLLEALQERLGPE-------GVRGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVL  269 (381)
T ss_dssp             EEEECTTCTTTTSCCHHHHHHHHHHHHHHCTT-------TTTTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHH
T ss_pred             EEEeCCCceeCCCCCHHHHHHHHHHHHhhccc-------CCCCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHH
Confidence            4555666666331  33444555555554311       113458999999999998888765  679999999999999


Q ss_pred             HHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 010968          154 WAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLV  233 (496)
Q Consensus       154 ~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~  233 (496)
                      .|++|++.|+ +.  ++++.+|..+                                                    .. 
T Consensus       270 ~A~~n~~~~~-~~--v~~~~~D~~~----------------------------------------------------~~-  293 (381)
T 3dmg_A          270 SLQKGLEANA-LK--AQALHSDVDE----------------------------------------------------AL-  293 (381)
T ss_dssp             HHHHHHHHTT-CC--CEEEECSTTT----------------------------------------------------TS-
T ss_pred             HHHHHHHHcC-CC--eEEEEcchhh----------------------------------------------------cc-
Confidence            9999999985 54  7888776431                                                    00 


Q ss_pred             cccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHH
Q 010968          234 GVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFL  313 (496)
Q Consensus       234 ~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L  313 (496)
                         ...++||+|+|||||.....              .       .......+++++..+++++|++.+..........+
T Consensus       294 ---~~~~~fD~Ii~npp~~~~~~--------------~-------~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~  349 (381)
T 3dmg_A          294 ---TEEARFDIIVTNPPFHVGGA--------------V-------ILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPL  349 (381)
T ss_dssp             ---CTTCCEEEEEECCCCCTTCS--------------S-------CCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHH
T ss_pred             ---ccCCCeEEEEECCchhhccc--------------c-------cHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHH
Confidence               11368999999999974211              0       12346778888889999999988777766555554


Q ss_pred             HHH
Q 010968          314 ISK  316 (496)
Q Consensus       314 ~~~  316 (496)
                      ++.
T Consensus       350 l~~  352 (381)
T 3dmg_A          350 LEE  352 (381)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.39  E-value=3.2e-12  Score=117.74  Aligned_cols=142  Identities=13%  Similarity=0.047  Sum_probs=103.9

Q ss_pred             CCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCc
Q 010968           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL  168 (496)
Q Consensus        89 P~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~r  168 (496)
                      |.+..++.++.+.+....  .    -...+|||||||+|.++..++...++.+++|+|+|+.+++.|++|++.++ +.+ 
T Consensus        45 ~~~~~~~~~~~~~l~~~~--~----~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~-  116 (207)
T 1jsx_A           45 DPNEMLVRHILDSIVVAP--Y----LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK-LEN-  116 (207)
T ss_dssp             ---CHHHHHHHHHHHHGG--G----CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT-CSS-
T ss_pred             CHHHHHHHHHHhhhhhhh--h----cCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCC-
Confidence            455667777777664310  0    01358999999999999999888888999999999999999999999885 655 


Q ss_pred             EEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEEC
Q 010968          169 IEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN  248 (496)
Q Consensus       169 I~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcN  248 (496)
                      ++++.+|..+                                                    +.     ..++||+|+||
T Consensus       117 v~~~~~d~~~----------------------------------------------------~~-----~~~~~D~i~~~  139 (207)
T 1jsx_A          117 IEPVQSRVEE----------------------------------------------------FP-----SEPPFDGVISR  139 (207)
T ss_dssp             EEEEECCTTT----------------------------------------------------SC-----CCSCEEEEECS
T ss_pred             eEEEecchhh----------------------------------------------------CC-----ccCCcCEEEEe
Confidence            8888876431                                                    00     13579999997


Q ss_pred             CCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEE
Q 010968          249 PPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTT  328 (496)
Q Consensus       249 PPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~  328 (496)
                      . +                  .+           +..+++....+++++|++..+.| ..+.+.+.+.+.  |+..+++.
T Consensus       140 ~-~------------------~~-----------~~~~l~~~~~~L~~gG~l~~~~~-~~~~~~~~~~~~--g~~~~~~~  186 (207)
T 1jsx_A          140 A-F------------------AS-----------LNDMVSWCHHLPGEQGRFYALKG-QMPEDEIALLPE--EYQVESVV  186 (207)
T ss_dssp             C-S------------------SS-----------HHHHHHHHTTSEEEEEEEEEEES-SCCHHHHHTSCT--TEEEEEEE
T ss_pred             c-c------------------CC-----------HHHHHHHHHHhcCCCcEEEEEeC-CCchHHHHHHhc--CCceeeee
Confidence            3 0                  11           45677787888999999999998 567777777665  77766633

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.38  E-value=9.9e-12  Score=114.72  Aligned_cols=123  Identities=18%  Similarity=0.121  Sum_probs=96.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||||||+|.++..++. .+..+++|+|+|+.+++.|++|+..++ +.+ ++++.+|...                 
T Consensus        61 ~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~-v~~~~~d~~~-----------------  120 (205)
T 3grz_A           61 PLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNG-IYD-IALQKTSLLA-----------------  120 (205)
T ss_dssp             CCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTT-CCC-CEEEESSTTT-----------------
T ss_pred             CCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcC-CCc-eEEEeccccc-----------------
Confidence            45899999999998877664 456699999999999999999999885 655 8888776421                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         .      ..++||+|+||+|+.                       
T Consensus       121 -----------------------------------~------~~~~fD~i~~~~~~~-----------------------  136 (205)
T 3grz_A          121 -----------------------------------D------VDGKFDLIVANILAE-----------------------  136 (205)
T ss_dssp             -----------------------------------T------CCSCEEEEEEESCHH-----------------------
T ss_pred             -----------------------------------c------CCCCceEEEECCcHH-----------------------
Confidence                                               0      135799999999761                       


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEE-eCCcCcHHHHHHHHHHcCCeeEEEEE
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSM-VGRKSNLKFLISKLRKVGVTIVKTTE  329 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsm-vGk~s~l~~L~~~L~~~g~~~vk~~e  329 (496)
                            .+.+++++...+++++|++... +. ..+.+.+.+.+++.|+..+.+.+
T Consensus       137 ------~~~~~l~~~~~~L~~gG~l~~~~~~-~~~~~~~~~~~~~~Gf~~~~~~~  184 (205)
T 3grz_A          137 ------ILLDLIPQLDSHLNEDGQVIFSGID-YLQLPKIEQALAENSFQIDLKMR  184 (205)
T ss_dssp             ------HHHHHGGGSGGGEEEEEEEEEEEEE-GGGHHHHHHHHHHTTEEEEEEEE
T ss_pred             ------HHHHHHHHHHHhcCCCCEEEEEecC-cccHHHHHHHHHHcCCceEEeec
Confidence                  1356677777788888887654 44 67899999999999998777654

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.37  E-value=9.4e-12  Score=122.41  Aligned_cols=119  Identities=8%  Similarity=0.051  Sum_probs=90.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||+|||+|.+++.++..... +|+|+|+|+.|++.|++|++.|+ +.++++++.+|..+                 
T Consensus       126 ~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~-~~~~v~~~~~D~~~-----------------  186 (278)
T 2frn_A          126 DELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNK-VEDRMSAYNMDNRD-----------------  186 (278)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTT-CTTTEEEECSCTTT-----------------
T ss_pred             CCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcC-CCceEEEEECCHHH-----------------
Confidence            458999999999998888776444 79999999999999999999995 88889998887431                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         +.     ..++||+|+||||+..                      
T Consensus       187 -----------------------------------~~-----~~~~fD~Vi~~~p~~~----------------------  204 (278)
T 2frn_A          187 -----------------------------------FP-----GENIADRILMGYVVRT----------------------  204 (278)
T ss_dssp             -----------------------------------CC-----CCSCEEEEEECCCSSG----------------------
T ss_pred             -----------------------------------hc-----ccCCccEEEECCchhH----------------------
Confidence                                               11     1357999999999632                      


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeCC------cCcHHHHHHHHHHcCCe
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGR------KSNLKFLISKLRKVGVT  323 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk------~s~l~~L~~~L~~~g~~  323 (496)
                              ..+++++..+++++|++.+....      ....+.+.+.+++.|+.
T Consensus       205 --------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~  250 (278)
T 2frn_A          205 --------HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYD  250 (278)
T ss_dssp             --------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCE
T ss_pred             --------HHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCe
Confidence                    12344555678888877543221      35678889999999985

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.37  E-value=6.9e-12  Score=113.74  Aligned_cols=71  Identities=20%  Similarity=0.144  Sum_probs=56.1

Q ss_pred             HHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEE
Q 010968           94 YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRK  173 (496)
Q Consensus        94 yi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~  173 (496)
                      .+.++..++....       ....+|||||||+|.++..|+..  +.+|+|+|+|+.+++.|++|++.++ + .+++++.
T Consensus         8 ~~~~~~~~l~~~~-------~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~-~-~~v~~~~   76 (185)
T 3mti_A            8 PIHMSHDFLAEVL-------DDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLG-I-ENTELIL   76 (185)
T ss_dssp             HHHHHHHHHHTTC-------CTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHT-C-CCEEEEE
T ss_pred             HHHHHHHHHHHhC-------CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEe
Confidence            4556666665431       12458999999999998888765  7899999999999999999999885 6 6799887


Q ss_pred             cc
Q 010968          174 VD  175 (496)
Q Consensus       174 ~d  175 (496)
                      .+
T Consensus        77 ~~   78 (185)
T 3mti_A           77 DG   78 (185)
T ss_dssp             SC
T ss_pred             Cc
Confidence            43

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.37  E-value=8.6e-12  Score=115.09  Aligned_cols=120  Identities=16%  Similarity=0.152  Sum_probs=86.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||+|||+|.++..++.. ...+++|+|+|+.+++.|++|++.++ +  +++++.+|..+                 
T Consensus        50 ~~~vlD~g~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~-~--~~~~~~~d~~~-----------------  108 (207)
T 1wy7_A           50 GKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFK-G--KFKVFIGDVSE-----------------  108 (207)
T ss_dssp             TCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGT-T--SEEEEESCGGG-----------------
T ss_pred             cCEEEEeeCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcC-C--CEEEEECchHH-----------------
Confidence            458999999999998887754 33479999999999999999999885 5  68888776320                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                             +   .++||+|+|||||.....            +.     
T Consensus       109 ---------------------------------------~---~~~~D~v~~~~p~~~~~~------------~~-----  129 (207)
T 1wy7_A          109 ---------------------------------------F---NSRVDIVIMNPPFGSQRK------------HA-----  129 (207)
T ss_dssp             ---------------------------------------C---CCCCSEEEECCCCSSSST------------TT-----
T ss_pred             ---------------------------------------c---CCCCCEEEEcCCCccccC------------Cc-----
Confidence                                                   1   137999999999975321            11     


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCee
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTI  324 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~  324 (496)
                         ...+    ++....++  ++.|.+-+........+.+.+.+.|+..
T Consensus       130 ---~~~~----l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~  169 (207)
T 1wy7_A          130 ---DRPF----LLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVV  169 (207)
T ss_dssp             ---THHH----HHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEE
T ss_pred             ---hHHH----HHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeE
Confidence               2333    34444444  6666555545667788888999999753

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.37  E-value=6.2e-12  Score=129.83  Aligned_cols=133  Identities=8%  Similarity=0.062  Sum_probs=92.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCC-cEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISE-LIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~-rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|||+|||+|.+++.++.. ...+|+|+|+|+.|++.|++|++.|+ +.+ +++++.+|...                
T Consensus       213 ~~~VLDl~cGtG~~sl~la~~-ga~~V~~vD~s~~al~~A~~N~~~n~-~~~~~v~~~~~D~~~----------------  274 (385)
T 2b78_A          213 GKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANH-LDMANHQLVVMDVFD----------------  274 (385)
T ss_dssp             TCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTT-CCCTTEEEEESCHHH----------------
T ss_pred             CCeEEEEeeccCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC-CCccceEEEECCHHH----------------
Confidence            358999999999998888753 22489999999999999999999995 765 89999887421                


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                          ++......+++||+|++||||+.....          ...+   
T Consensus       275 ------------------------------------~l~~~~~~~~~fD~Ii~DPP~~~~~~~----------~~~~---  305 (385)
T 2b78_A          275 ------------------------------------YFKYARRHHLTYDIIIIDPPSFARNKK----------EVFS---  305 (385)
T ss_dssp             ------------------------------------HHHHHHHTTCCEEEEEECCCCC---------------CCCC---
T ss_pred             ------------------------------------HHHHHHHhCCCccEEEECCCCCCCChh----------hHHH---
Confidence                                                111111124589999999999853211          0111   


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcC-cHHHHHHHHHH
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKS-NLKFLISKLRK  319 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s-~l~~L~~~L~~  319 (496)
                          .+..+.+++..+..+++++|++.+...... ....+.+.+++
T Consensus       306 ----~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~  347 (385)
T 2b78_A          306 ----VSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEK  347 (385)
T ss_dssp             ----HHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHH
Confidence                466788899999999999998876665333 23444444443

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.37  E-value=9.7e-12  Score=113.99  Aligned_cols=140  Identities=14%  Similarity=0.125  Sum_probs=100.8

Q ss_pred             CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccccc
Q 010968          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDES  196 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~  196 (496)
                      .+|||||||+|.+...|+.. ++.+++|+|+++.+++.|+++++.++ +..+++++..|..+                  
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~------------------  104 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADAN-LNDRIQIVQGDVHN------------------  104 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECBTTB------------------
T ss_pred             CEEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhcc-ccCceEEEEcCHHH------------------
Confidence            38999999999998888876 78899999999999999999999985 77789999887431                  


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccccc
Q 010968          197 NMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCS  276 (496)
Q Consensus       197 ~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~  276 (496)
                                                        +  .  ..+++||+|+||..+..-.+                    
T Consensus       105 ----------------------------------~--~--~~~~~~D~v~~~~~l~~~~~--------------------  126 (219)
T 3dlc_A          105 ----------------------------------I--P--IEDNYADLIVSRGSVFFWED--------------------  126 (219)
T ss_dssp             ----------------------------------C--S--SCTTCEEEEEEESCGGGCSC--------------------
T ss_pred             ----------------------------------C--C--CCcccccEEEECchHhhccC--------------------
Confidence                                              0  0  02468999999987653211                    


Q ss_pred             CchHHHHHHHHHHHHHhhcCCeEEEEEe-----------------------------CCcCcHHHHHHHHHHcCCeeEEE
Q 010968          277 GGERAFITRIIEDSVALKQTFRWYTSMV-----------------------------GRKSNLKFLISKLRKVGVTIVKT  327 (496)
Q Consensus       277 GGel~FI~riI~eS~~ll~~~gwftsmv-----------------------------Gk~s~l~~L~~~L~~~g~~~vk~  327 (496)
                            ...++++...+++++|++....                             ....+.+.+.+.|++.|+..+++
T Consensus       127 ------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~  200 (219)
T 3dlc_A          127 ------VATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEI  200 (219)
T ss_dssp             ------HHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEE
T ss_pred             ------HHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEE
Confidence                  1234444455556666544321                             11224478889999999999988


Q ss_pred             EEecCCCeeEEEEEEe
Q 010968          328 TEFVQGQTCRWGLAWS  343 (496)
Q Consensus       328 ~ed~qG~t~Rw~lAWs  343 (496)
                      ..+..   ..|++.+.
T Consensus       201 ~~~~~---~~~~~~~k  213 (219)
T 3dlc_A          201 ILGDE---GFWIIISK  213 (219)
T ss_dssp             EEETT---EEEEEEBC
T ss_pred             EecCC---ceEEEEec
Confidence            86653   45777665

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.36  E-value=6.4e-12  Score=127.25  Aligned_cols=133  Identities=18%  Similarity=0.122  Sum_probs=97.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||+|||+|.+++. +.  ...+|+|+|+|+.|++.|++|++.|+ +.++++++.+|..+                 
T Consensus       196 ~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~-l~~~v~~~~~D~~~-----------------  254 (336)
T 2yx1_A          196 NDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNK-LEHKIIPILSDVRE-----------------  254 (336)
T ss_dssp             TCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEESCGGG-----------------
T ss_pred             CCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECChHH-----------------
Confidence            45899999999999877 54  56799999999999999999999995 87789998886321                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         ++       ++||+|++|||++..                     
T Consensus       255 -----------------------------------~~-------~~fD~Vi~dpP~~~~---------------------  271 (336)
T 2yx1_A          255 -----------------------------------VD-------VKGNRVIMNLPKFAH---------------------  271 (336)
T ss_dssp             -----------------------------------CC-------CCEEEEEECCTTTGG---------------------
T ss_pred             -----------------------------------hc-------CCCcEEEECCcHhHH---------------------
Confidence                                               11       579999999998731                     


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEE-EeCCcCcHHHHHHHHHHc-CCe--eEEEEEecCCCeeEEEEEEeeC
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTS-MVGRKSNLKFLISKLRKV-GVT--IVKTTEFVQGQTCRWGLAWSFV  345 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwfts-mvGk~s~l~~L~~~L~~~-g~~--~vk~~ed~qG~t~Rw~lAWsF~  345 (496)
                               .+++.+..+++++|++.+ .....  ...+.+.+++. ++.  .++..+++..++  |.+.|.|.
T Consensus       272 ---------~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~l~~~~~~~i~~~~~v~~~~p~~--~~~~~~~~  332 (336)
T 2yx1_A          272 ---------KFIDKALDIVEEGGVIHYYTIGKD--FDKAIKLFEKKCDCEVLEKRIVKSYAPRE--YILALDFK  332 (336)
T ss_dssp             ---------GGHHHHHHHEEEEEEEEEEEEESS--SHHHHHHHHHHSEEEEEEEEEEEEEETTE--EEEEEEEE
T ss_pred             ---------HHHHHHHHHcCCCCEEEEEEeecC--chHHHHHHHHhcCCcEEEEEEEeccCCCC--CEEEEEEE
Confidence                     345555667778887544 44423  66777777776 554  355666776663  44566654

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.36  E-value=2.3e-11  Score=109.02  Aligned_cols=145  Identities=15%  Similarity=0.099  Sum_probs=108.4

Q ss_pred             eCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCC
Q 010968           85 CPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPH  164 (496)
Q Consensus        85 iPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~  164 (496)
                      +|+ |.+.....++.+.+..         ....+|||+|||+|.+...++...  .+++|+|+|+.+++.|++|++.++ 
T Consensus        13 ~~~-~~~~~~~~~~~~~~~~---------~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~-   79 (192)
T 1l3i_A           13 VPG-PTAMEVRCLIMCLAEP---------GKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHG-   79 (192)
T ss_dssp             SCC-CCCHHHHHHHHHHHCC---------CTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTT-
T ss_pred             CCC-CChHHHHHHHHHhcCC---------CCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcC-
Confidence            454 5567777777777642         134589999999999988777654  799999999999999999999885 


Q ss_pred             CCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEE
Q 010968          165 ISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDF  244 (496)
Q Consensus       165 L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDf  244 (496)
                      +..+++++..|..                                                       ..+ ...+.||+
T Consensus        80 ~~~~~~~~~~d~~-------------------------------------------------------~~~-~~~~~~D~  103 (192)
T 1l3i_A           80 LGDNVTLMEGDAP-------------------------------------------------------EAL-CKIPDIDI  103 (192)
T ss_dssp             CCTTEEEEESCHH-------------------------------------------------------HHH-TTSCCEEE
T ss_pred             CCcceEEEecCHH-------------------------------------------------------Hhc-ccCCCCCE
Confidence            7667888877521                                                       000 11147999


Q ss_pred             EEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCee
Q 010968          245 CICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTI  324 (496)
Q Consensus       245 ImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~  324 (496)
                      |+|++|+.                  +           +..++++...+++++|++............+.+.+++.|+ .
T Consensus       104 v~~~~~~~------------------~-----------~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~-~  153 (192)
T 1l3i_A          104 AVVGGSGG------------------E-----------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGF-D  153 (192)
T ss_dssp             EEESCCTT------------------C-----------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTC-C
T ss_pred             EEECCchH------------------H-----------HHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCC-c
Confidence            99998751                  1           2556777778889999987776667788899999999998 4


Q ss_pred             EEEE
Q 010968          325 VKTT  328 (496)
Q Consensus       325 vk~~  328 (496)
                      +++.
T Consensus       154 ~~~~  157 (192)
T 1l3i_A          154 VNIT  157 (192)
T ss_dssp             CEEE
T ss_pred             eEEE
Confidence            4444

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.36  E-value=8.2e-12  Score=121.40  Aligned_cols=145  Identities=13%  Similarity=0.081  Sum_probs=107.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||||||+|++++.|+...++++|+|+|+|+++++.|++|++.++ +.+ |+++.+|..+                 
T Consensus        81 ~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-l~~-v~~~~~d~~~-----------------  141 (249)
T 3g89_A           81 PLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLG-LKG-ARALWGRAEV-----------------  141 (249)
T ss_dssp             SCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT-CSS-EEEEECCHHH-----------------
T ss_pred             CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC-CCc-eEEEECcHHH-----------------
Confidence            468999999999999999988899999999999999999999999985 754 9998886321                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         +... ....++||+|+|+=                +   .+    
T Consensus       142 -----------------------------------~~~~-~~~~~~fD~I~s~a----------------~---~~----  162 (249)
T 3g89_A          142 -----------------------------------LARE-AGHREAYARAVARA----------------V---AP----  162 (249)
T ss_dssp             -----------------------------------HTTS-TTTTTCEEEEEEES----------------S---CC----
T ss_pred             -----------------------------------hhcc-cccCCCceEEEECC----------------c---CC----
Confidence                                               0000 00136899999941                0   11    


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCc--CcHHHHHHHHHHcCCeeEEEEEe-cCC-CeeEEEEEEeeC
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRK--SNLKFLISKLRKVGVTIVKTTEF-VQG-QTCRWGLAWSFV  345 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~--s~l~~L~~~L~~~g~~~vk~~ed-~qG-~t~Rw~lAWsF~  345 (496)
                             +..+++.+..+++++|++..+.|..  ..+..+...+++.|+...++... +.+ ...|.++.+...
T Consensus       163 -------~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~~~k~  229 (249)
T 3g89_A          163 -------LCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEKT  229 (249)
T ss_dssp             -------HHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred             -------HHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEEEEeC
Confidence                   3567788888999999999998843  34556777888899887776655 333 236887777764

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.35  E-value=3.4e-12  Score=119.24  Aligned_cols=92  Identities=11%  Similarity=-0.014  Sum_probs=66.5

Q ss_pred             HhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHH
Q 010968           71 HDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV  150 (496)
Q Consensus        71 ~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~  150 (496)
                      .+.|..+.+|++ ..+| |....+...+.+.+...        ....+|||+|||+|.+++.++.+. ..+|+|+|+|+.
T Consensus        20 ~~~g~~l~~~~~-~~~r-p~~~~~~~~l~~~l~~~--------~~~~~vLDlgcG~G~~~~~l~~~~-~~~V~~vD~s~~   88 (202)
T 2fpo_A           20 QWRGRKLPVPDS-PGLR-PTTDRVRETLFNWLAPV--------IVDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRA   88 (202)
T ss_dssp             GGTTCEEECCCC--------CHHHHHHHHHHHHHH--------HTTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHH
T ss_pred             EEcCcEecCCCC-CCCC-CCHHHHHHHHHHHHHhh--------cCCCeEEEeCCCcCHHHHHHHhcC-CCEEEEEECCHH
Confidence            467889999886 4556 56666666666666421        023589999999999987665542 348999999999


Q ss_pred             HHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          151 ALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       151 AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      +++.|++|++.++ + .+|+++.+|
T Consensus        89 ~l~~a~~~~~~~~-~-~~v~~~~~D  111 (202)
T 2fpo_A           89 VSQQLIKNLATLK-A-GNARVVNSN  111 (202)
T ss_dssp             HHHHHHHHHHHTT-C-CSEEEECSC
T ss_pred             HHHHHHHHHHHcC-C-CcEEEEECC
Confidence            9999999999985 6 578888776

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.35  E-value=2.7e-11  Score=107.99  Aligned_cols=137  Identities=16%  Similarity=0.076  Sum_probs=100.5

Q ss_pred             CCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCc
Q 010968           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL  168 (496)
Q Consensus        89 P~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~r  168 (496)
                      |.......++.+.+..         ....+|||+|||+|.+...++.  +..+++|+|+++.+++.|++|++.++ + .+
T Consensus        18 ~~~~~~~~~~~~~~~~---------~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~-~-~~   84 (183)
T 2yxd_A           18 ITKEEIRAVSIGKLNL---------NKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFN-I-KN   84 (183)
T ss_dssp             CCCHHHHHHHHHHHCC---------CTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTT-C-CS
T ss_pred             cCHHHHHHHHHHHcCC---------CCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcC-C-Cc
Confidence            4556777777777743         1345899999999999887776  78899999999999999999999985 6 46


Q ss_pred             EEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEEC
Q 010968          169 IEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN  248 (496)
Q Consensus       169 I~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcN  248 (496)
                      ++++..|..                                                       ..+  +.++||+|+||
T Consensus        85 ~~~~~~d~~-------------------------------------------------------~~~--~~~~~D~i~~~  107 (183)
T 2yxd_A           85 CQIIKGRAE-------------------------------------------------------DVL--DKLEFNKAFIG  107 (183)
T ss_dssp             EEEEESCHH-------------------------------------------------------HHG--GGCCCSEEEEC
T ss_pred             EEEEECCcc-------------------------------------------------------ccc--cCCCCcEEEEC
Confidence            888877632                                                       111  12579999999


Q ss_pred             CCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEE
Q 010968          249 PPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTT  328 (496)
Q Consensus       249 PPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~  328 (496)
                      +|                   .+           +..++++...+  ++|++........++..+.+.|++.|+. ++..
T Consensus       108 ~~-------------------~~-----------~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~-~~~~  154 (183)
T 2yxd_A          108 GT-------------------KN-----------IEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYN-VDAV  154 (183)
T ss_dssp             SC-------------------SC-----------HHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCE-EEEE
T ss_pred             Cc-------------------cc-----------HHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCe-EEEE
Confidence            98                   01           23344554455  7777766665577889999999999963 4443

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.33  E-value=3.3e-12  Score=119.29  Aligned_cols=93  Identities=11%  Similarity=-0.026  Sum_probs=63.6

Q ss_pred             HhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHH
Q 010968           71 HDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV  150 (496)
Q Consensus        71 ~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~  150 (496)
                      .+.|..+.+|++. .++ |....+...+.+.+...        ....+|||+|||+|.++..++.+ ...+|+|+|+|++
T Consensus        19 ~~~g~~l~~~~~~-~~r-p~~~~~~~~l~~~l~~~--------~~~~~vLDlGcGtG~~~~~~~~~-~~~~v~gvD~s~~   87 (201)
T 2ift_A           19 LWRGRKLPVLNSE-GLR-PTGDRVKETLFNWLMPY--------IHQSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKT   87 (201)
T ss_dssp             TTTTCEEECC-----------CHHHHHHHHHHHHH--------HTTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHH
T ss_pred             eeCCcEecCCCCC-CcC-cCHHHHHHHHHHHHHHh--------cCCCeEEEcCCccCHHHHHHHHc-cCCEEEEEECCHH
Confidence            4678888888763 444 44455555555555421        02358999999999998766554 3358999999999


Q ss_pred             HHHHHHHHHHHCCCCC-CcEEEEEcc
Q 010968          151 ALEWAEKNVKSNPHIS-ELIEIRKVD  175 (496)
Q Consensus       151 AL~~A~~N~~~N~~L~-~rI~~v~~d  175 (496)
                      +++.|++|++.++ +. ++++++.+|
T Consensus        88 ~l~~a~~~~~~~~-~~~~~v~~~~~d  112 (201)
T 2ift_A           88 VANQLKKNLQTLK-CSSEQAEVINQS  112 (201)
T ss_dssp             HHHHHHHHHHHTT-CCTTTEEEECSC
T ss_pred             HHHHHHHHHHHhC-CCccceEEEECC
Confidence            9999999999985 64 579988776

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.32  E-value=3e-11  Score=114.21  Aligned_cols=152  Identities=14%  Similarity=0.106  Sum_probs=102.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||+|||+|.++..++..  +.+|+|+|+|+.+++.|++|++.++ +..+++++.+|..+                 
T Consensus        79 ~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~-----------------  138 (241)
T 3gdh_A           79 CDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYG-IADKIEFICGDFLL-----------------  138 (241)
T ss_dssp             CSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEESCHHH-----------------
T ss_pred             CCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcC-CCcCeEEEECChHH-----------------
Confidence            458999999999998888764  5899999999999999999999985 76789999887321                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         +.     ..++||+|+|||||........     .+ .....++.
T Consensus       139 -----------------------------------~~-----~~~~~D~v~~~~~~~~~~~~~~-----~~-~~~~~~L~  172 (241)
T 3gdh_A          139 -----------------------------------LA-----SFLKADVVFLSPPWGGPDYATA-----ET-FDIRTMMS  172 (241)
T ss_dssp             -----------------------------------HG-----GGCCCSEEEECCCCSSGGGGGS-----SS-BCTTTSCS
T ss_pred             -----------------------------------hc-----ccCCCCEEEECCCcCCcchhhh-----HH-HHHHhhcC
Confidence                                               10     1357999999999986433211     11 12334556


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecCCCeeEEEEEE
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAW  342 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t~Rw~lAW  342 (496)
                      +||- .    ++.....+.....+   .+.+...++.+..++...|...+. .....|...+..+-|
T Consensus       173 pgG~-~----i~~~~~~~~~~~~~---~lp~~~~~~~~~~~l~~~g~~~i~-~~~~~~~~k~~~~~~  230 (241)
T 3gdh_A          173 PDGF-E----IFRLSKKITNNIVY---FLPRNADIDQVASLAGPGGQVEIE-QNFLNNKLKTITAYF  230 (241)
T ss_dssp             SCHH-H----HHHHHHHHCSCEEE---EEETTBCHHHHHHTTCTTCCEEEE-EEEETTEEEEEEEEE
T ss_pred             Ccce-e----HHHHHHhhCCceEE---ECCCCCCHHHHHHHhccCCCEEEE-ehhhcCccceEEEEe
Confidence            7663 2    23333444433333   344566788888888777765444 344677766554433

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.31  E-value=1.3e-11  Score=119.64  Aligned_cols=136  Identities=15%  Similarity=0.074  Sum_probs=100.0

Q ss_pred             cHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEE
Q 010968           91 RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIE  170 (496)
Q Consensus        91 R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~  170 (496)
                      +..++.++...+.           ...+|||+|||+|.+++.++..  +.+++|+|+|+.+++.|++|++.|+ +.  ++
T Consensus       107 t~~~~~~l~~~~~-----------~~~~VLDiGcG~G~l~~~la~~--g~~v~gvDi~~~~v~~a~~n~~~~~-~~--v~  170 (254)
T 2nxc_A          107 TRLALKALARHLR-----------PGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNG-VR--PR  170 (254)
T ss_dssp             HHHHHHHHHHHCC-----------TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTT-CC--CE
T ss_pred             HHHHHHHHHHhcC-----------CCCEEEEecCCCcHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcC-Cc--EE
Confidence            3456666655432           2358999999999998776653  3499999999999999999999985 54  77


Q ss_pred             EEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCC
Q 010968          171 IRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPP  250 (496)
Q Consensus       171 ~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPP  250 (496)
                      ++.+|..                                                       ..+  +.++||+|+||++
T Consensus       171 ~~~~d~~-------------------------------------------------------~~~--~~~~fD~Vv~n~~  193 (254)
T 2nxc_A          171 FLEGSLE-------------------------------------------------------AAL--PFGPFDLLVANLY  193 (254)
T ss_dssp             EEESCHH-------------------------------------------------------HHG--GGCCEEEEEEECC
T ss_pred             EEECChh-------------------------------------------------------hcC--cCCCCCEEEECCc
Confidence            7766521                                                       111  1357999999986


Q ss_pred             CccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEE-EeCCcCcHHHHHHHHHHcCCeeEEEEE
Q 010968          251 FFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS-MVGRKSNLKFLISKLRKVGVTIVKTTE  329 (496)
Q Consensus       251 Y~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwfts-mvGk~s~l~~L~~~L~~~g~~~vk~~e  329 (496)
                      +.                             .+..++.+...+++++|++.. .+. ..+...+.+.+++.|+..+.+.+
T Consensus       194 ~~-----------------------------~~~~~l~~~~~~LkpgG~lils~~~-~~~~~~v~~~l~~~Gf~~~~~~~  243 (254)
T 2nxc_A          194 AE-----------------------------LHAALAPRYREALVPGGRALLTGIL-KDRAPLVREAMAGAGFRPLEEAA  243 (254)
T ss_dssp             HH-----------------------------HHHHHHHHHHHHEEEEEEEEEEEEE-GGGHHHHHHHHHHTTCEEEEEEE
T ss_pred             HH-----------------------------HHHHHHHHHHHHcCCCCEEEEEeec-cCCHHHHHHHHHHCCCEEEEEec
Confidence            41                             135677777888888888754 333 67899999999999998777654

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.31  E-value=2.9e-11  Score=115.24  Aligned_cols=127  Identities=17%  Similarity=0.185  Sum_probs=101.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHH-hcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGAS-LLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~-~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|||+|||+|.+...++.. .++.+++|+|+++++++.|++|++.++ +.++++++..|..+                
T Consensus        94 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~----------------  156 (255)
T 3mb5_A           94 GDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAG-FDDRVTIKLKDIYE----------------  156 (255)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHT-CTTTEEEECSCGGG----------------
T ss_pred             CCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcC-CCCceEEEECchhh----------------
Confidence            458999999999999888887 458899999999999999999999885 77789998776321                


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                             .+  ..++||+|++|||..                      
T Consensus       157 ---------------------------------------~~--~~~~~D~v~~~~~~~----------------------  173 (255)
T 3mb5_A          157 ---------------------------------------GI--EEENVDHVILDLPQP----------------------  173 (255)
T ss_dssp             ---------------------------------------CC--CCCSEEEEEECSSCG----------------------
T ss_pred             ---------------------------------------cc--CCCCcCEEEECCCCH----------------------
Confidence                                                   11  235799999999821                      


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcC--CeeEEEEEec
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVG--VTIVKTTEFV  331 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g--~~~vk~~ed~  331 (496)
                               ..++++...+++++|++........+...+.+.|++.|  +..+++.+..
T Consensus       174 ---------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~f~~~~~~e~~  223 (255)
T 3mb5_A          174 ---------ERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTINVL  223 (255)
T ss_dssp             ---------GGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTGGGBSCCEEECCC
T ss_pred             ---------HHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCccccEEEEEe
Confidence                     12355666788899998877766778999999999999  9888887654

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.30  E-value=1.2e-11  Score=116.58  Aligned_cols=140  Identities=9%  Similarity=0.132  Sum_probs=101.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||||||+|.+...|+...|+++++|+|+|+.+++.|++|++.++ + .+|+++.+|..+                 
T Consensus        39 ~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~-~-~nv~~~~~d~~~-----------------   99 (213)
T 2fca_A           39 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE-A-QNVKLLNIDADT-----------------   99 (213)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC-C-SSEEEECCCGGG-----------------
T ss_pred             CceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcC-C-CCEEEEeCCHHH-----------------
Confidence            458999999999999999988889999999999999999999999885 6 358888776321                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCC--CccCcccccCCCCcccCCCCCcc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPP--FFESMEEAGLNPKTSCGGTPEEM  273 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPP--Y~~s~eea~~eP~~al~G~~~Em  273 (496)
                                                          +...+ +...||.|++|.|  +.....+    ++.         
T Consensus       100 ------------------------------------l~~~~-~~~~~d~v~~~~~~p~~~~~~~----~~r---------  129 (213)
T 2fca_A          100 ------------------------------------LTDVF-EPGEVKRVYLNFSDPWPKKRHE----KRR---------  129 (213)
T ss_dssp             ------------------------------------HHHHC-CTTSCCEEEEESCCCCCSGGGG----GGS---------
T ss_pred             ------------------------------------HHhhc-CcCCcCEEEEECCCCCcCcccc----ccc---------
Confidence                                                00001 2356899988854  3221110    000         


Q ss_pred             cccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEec
Q 010968          274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFV  331 (496)
Q Consensus       274 v~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~  331 (496)
                             .+...++++...+++++|++.+..........+.+.+.+.|+..+.+..|+
T Consensus       130 -------l~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~~~~~~d~  180 (213)
T 2fca_A          130 -------LTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLTYVSLDL  180 (213)
T ss_dssp             -------TTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEEEEESSG
T ss_pred             -------cCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCccccccccc
Confidence                   013566777778899999988777655567788889999998777666554

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.30  E-value=3.9e-11  Score=121.23  Aligned_cols=172  Identities=12%  Similarity=0.062  Sum_probs=112.3

Q ss_pred             HhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHH
Q 010968           71 HDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV  150 (496)
Q Consensus        71 ~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~  150 (496)
                      .+||..+.+...+++|+ +....|-+.+..+.... .      ..+.+|||||||+|+++..++...+..+++++|+|++
T Consensus        80 ~~~g~~l~ldg~~~~~~-~de~~y~e~l~~~~l~~-~------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~  151 (321)
T 2pt6_A           80 TTYGKVLVLDGVIQLTE-KDEFAYHEMMTHVPMTV-S------KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDET  151 (321)
T ss_dssp             SSSCEEEEETTEEEEET-TTHHHHHHHHHHHHHHH-S------SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHH
T ss_pred             CCCcEEEEECCEeeeCc-ccchHHHHHHHHHHHhc-C------CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHH
Confidence            47899999998899998 45444544444321110 0      1346899999999999888876656789999999999


Q ss_pred             HHHHHHHHHHHC-CCC-CCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010968          151 ALEWAEKNVKSN-PHI-SELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHG  228 (496)
Q Consensus       151 AL~~A~~N~~~N-~~L-~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~  228 (496)
                      +++.|++|+... +.+ ..+++++.+|..+                                                  
T Consensus       152 ~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~--------------------------------------------------  181 (321)
T 2pt6_A          152 VIEVSKIYFKNISCGYEDKRVNVFIEDASK--------------------------------------------------  181 (321)
T ss_dssp             HHHHHHHHCTTTSGGGGSTTEEEEESCHHH--------------------------------------------------
T ss_pred             HHHHHHHHHHhhccccCCCcEEEEEccHHH--------------------------------------------------
Confidence            999999998752 013 3579998876321                                                  


Q ss_pred             CCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCc-
Q 010968          229 PPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRK-  307 (496)
Q Consensus       229 ~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~-  307 (496)
                        .+.   ...++||+|++|||-.       ..|...+               +-..++++....++++|++....+.. 
T Consensus       182 --~l~---~~~~~fDvIi~d~~~p-------~~~~~~l---------------~~~~~l~~~~~~LkpgG~lv~~~~~~~  234 (321)
T 2pt6_A          182 --FLE---NVTNTYDVIIVDSSDP-------IGPAETL---------------FNQNFYEKIYNALKPNGYCVAQCESLW  234 (321)
T ss_dssp             --HHH---HCCSCEEEEEEECCCS-------SSGGGGG---------------SSHHHHHHHHHHEEEEEEEEEEECCTT
T ss_pred             --HHh---hcCCCceEEEECCcCC-------CCcchhh---------------hHHHHHHHHHHhcCCCcEEEEEcCCcc
Confidence              111   1135799999998410       0111000               01455666677899999998876532 


Q ss_pred             Cc---HHHHHHHHHHcCCeeEEEE
Q 010968          308 SN---LKFLISKLRKVGVTIVKTT  328 (496)
Q Consensus       308 s~---l~~L~~~L~~~g~~~vk~~  328 (496)
                      .+   +..+.+.+++. +..++..
T Consensus       235 ~~~~~~~~~~~~l~~~-F~~v~~~  257 (321)
T 2pt6_A          235 IHVGTIKNMIGYAKKL-FKKVEYA  257 (321)
T ss_dssp             TCHHHHHHHHHHHHTT-CSEEEEE
T ss_pred             cCHHHHHHHHHHHHHH-CCCeEEE
Confidence            23   45566666665 4455544

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.29  E-value=5.1e-11  Score=113.57  Aligned_cols=143  Identities=10%  Similarity=0.052  Sum_probs=102.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||||||+|.++..|+...++.+|+|+|+|+++++.|++|++.++ +. +|+++.+|..+                 
T Consensus        71 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~-~v~~~~~d~~~-----------------  131 (240)
T 1xdz_A           71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ-LE-NTTFCHDRAET-----------------  131 (240)
T ss_dssp             CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT-CS-SEEEEESCHHH-----------------
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC-CEEEEeccHHH-----------------
Confidence            458999999999998888877788999999999999999999999885 65 49998886321                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         +... ....++||+|+|+..                   .+    
T Consensus       132 -----------------------------------~~~~-~~~~~~fD~V~~~~~-------------------~~----  152 (240)
T 1xdz_A          132 -----------------------------------FGQR-KDVRESYDIVTARAV-------------------AR----  152 (240)
T ss_dssp             -----------------------------------HTTC-TTTTTCEEEEEEECC-------------------SC----
T ss_pred             -----------------------------------hccc-ccccCCccEEEEecc-------------------CC----
Confidence                                               0000 001357999999540                   11    


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcC--cHHHHHHHHHHcCCeeEEEEEecCC--CeeEEEEEEe
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKS--NLKFLISKLRKVGVTIVKTTEFVQG--QTCRWGLAWS  343 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s--~l~~L~~~L~~~g~~~vk~~ed~qG--~t~Rw~lAWs  343 (496)
                             +..++++...+++++|++.++.|...  .+..+.+.+++.|+..+.+..+...  ...|.++.+.
T Consensus       153 -------~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~  217 (240)
T 1xdz_A          153 -------LSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIR  217 (240)
T ss_dssp             -------HHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEE
T ss_pred             -------HHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEEE
Confidence                   56778888889999999988877432  3456777888999977666554332  2245544443

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.29  E-value=2.5e-11  Score=124.37  Aligned_cols=139  Identities=17%  Similarity=0.060  Sum_probs=98.6

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHC-----C-CCCCcEEEEEccCCCCCCcccccc
Q 010968          115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSN-----P-HISELIEIRKVDNSESTPSIQESL  187 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N-----~-~L~~rI~~v~~d~~~~~p~~~~~~  187 (496)
                      ...+|||||||+|.+...|+... ++.+|+|+|+++.+++.|++|++.+     + ....+|+++.+|..+..       
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~-------  155 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLA-------  155 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGG-------
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhh-------
Confidence            34689999999999998888876 6889999999999999999998754     1 11257999988753200       


Q ss_pred             cCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccC
Q 010968          188 TGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCG  267 (496)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~  267 (496)
                                         +          ..+            .++  .+++||+|+||..+...             
T Consensus       156 -------------------~----------~~~------------~~~--~~~~fD~V~~~~~l~~~-------------  179 (383)
T 4fsd_A          156 -------------------T----------AEP------------EGV--PDSSVDIVISNCVCNLS-------------  179 (383)
T ss_dssp             -------------------G----------CBS------------CCC--CTTCEEEEEEESCGGGC-------------
T ss_pred             -------------------h----------ccc------------CCC--CCCCEEEEEEccchhcC-------------
Confidence                               0          000            011  24689999999766431             


Q ss_pred             CCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEE-eCC---------------------cCcHHHHHHHHHHcCCeeE
Q 010968          268 GTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSM-VGR---------------------KSNLKFLISKLRKVGVTIV  325 (496)
Q Consensus       268 G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsm-vGk---------------------~s~l~~L~~~L~~~g~~~v  325 (496)
                        .+           ...++++...+++++|++.+. +..                     ....+.+.++|++.|+..+
T Consensus       180 --~d-----------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v  246 (383)
T 4fsd_A          180 --TN-----------KLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAGFRDV  246 (383)
T ss_dssp             --SC-----------HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHHTTCCCE
T ss_pred             --CC-----------HHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHHCCCceE
Confidence              11           246677777888999987653 221                     1345889999999999888


Q ss_pred             EEEE
Q 010968          326 KTTE  329 (496)
Q Consensus       326 k~~e  329 (496)
                      ++.+
T Consensus       247 ~~~~  250 (383)
T 4fsd_A          247 RLVS  250 (383)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7665

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.28  E-value=3.8e-11  Score=123.73  Aligned_cols=137  Identities=17%  Similarity=0.087  Sum_probs=93.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCC-CCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHI-SELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L-~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|||+|||+|.+++.++.. ...+|+|+|+|+.|++.|++|++.|+ + .++++++.+|..+                
T Consensus       221 ~~~VLDl~cG~G~~sl~la~~-g~~~V~~vD~s~~al~~a~~n~~~ng-l~~~~v~~~~~D~~~----------------  282 (396)
T 3c0k_A          221 NKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNK-LDLSKAEFVRDDVFK----------------  282 (396)
T ss_dssp             TCEEEEESCTTCSHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTT-CCGGGEEEEESCHHH----------------
T ss_pred             CCeEEEeeccCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC-CCccceEEEECCHHH----------------
Confidence            358999999999998887764 24589999999999999999999995 7 6689999887421                


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                          ++.......++||+|++||||+......      ...       
T Consensus       283 ------------------------------------~~~~~~~~~~~fD~Ii~dpP~~~~~~~~------~~~-------  313 (396)
T 3c0k_A          283 ------------------------------------LLRTYRDRGEKFDVIVMDPPKFVENKSQ------LMG-------  313 (396)
T ss_dssp             ------------------------------------HHHHHHHTTCCEEEEEECCSSTTTCSSS------SSC-------
T ss_pred             ------------------------------------HHHHHHhcCCCCCEEEECCCCCCCChhH------HHH-------
Confidence                                                1111111235799999999998643211      111       


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcC-c----HHHHHHHHHHcCCe
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKS-N----LKFLISKLRKVGVT  323 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s-~----l~~L~~~L~~~g~~  323 (496)
                          ...-+..++.++..+++++|++.+...... .    .+.+.+.+.+.|..
T Consensus       314 ----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~  363 (396)
T 3c0k_A          314 ----ACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRD  363 (396)
T ss_dssp             ----CCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCC
T ss_pred             ----HHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCe
Confidence                122366778888888889988765443221 1    22333466667753

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.27  E-value=2e-11  Score=123.18  Aligned_cols=135  Identities=16%  Similarity=0.118  Sum_probs=94.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcC-----CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLG-----WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGK  190 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~-----~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~  190 (496)
                      ..+|||+|||+|.+...++...+.     .+++|+|+++.++++|+.|+..++ +  ++.++.+|...            
T Consensus       131 ~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g-~--~~~i~~~D~l~------------  195 (344)
T 2f8l_A          131 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-Q--KMTLLHQDGLA------------  195 (344)
T ss_dssp             EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-C--CCEEEESCTTS------------
T ss_pred             CCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC-C--CceEEECCCCC------------
Confidence            468999999999998888877764     789999999999999999998875 5  47777776321            


Q ss_pred             ccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCc--cCcccc-cCCCCcccC
Q 010968          191 SVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFF--ESMEEA-GLNPKTSCG  267 (496)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~--~s~eea-~~eP~~al~  267 (496)
                                                                 ..  ..++||+|||||||.  +..+.. .++|..   
T Consensus       196 -------------------------------------------~~--~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~---  227 (344)
T 2f8l_A          196 -------------------------------------------NL--LVDPVDVVISDLPVGYYPDDENAKTFELCR---  227 (344)
T ss_dssp             -------------------------------------------CC--CCCCEEEEEEECCCSEESCHHHHTTSTTCC---
T ss_pred             -------------------------------------------cc--ccCCccEEEECCCCCCcCchhhhhhccccC---
Confidence                                                       00  135799999999963  221111 122211   


Q ss_pred             CCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEe-----CCcCcHHHHHHHHHHcCC
Q 010968          268 GTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMV-----GRKSNLKFLISKLRKVGV  322 (496)
Q Consensus       268 G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmv-----Gk~s~l~~L~~~L~~~g~  322 (496)
                              ..|-......++..+..+++++|++.+.+     + ..+...+.+.|.+.+.
T Consensus       228 --------~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~-~~~~~~ir~~l~~~~~  278 (344)
T 2f8l_A          228 --------EEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFG-TSDFAKVDKFIKKNGH  278 (344)
T ss_dssp             --------SSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGG-STTHHHHHHHHHHHEE
T ss_pred             --------CCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcC-CchHHHHHHHHHhCCe
Confidence                    11111223345666667888899987777     3 4567888888888775

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.27  E-value=9.3e-11  Score=110.64  Aligned_cols=125  Identities=12%  Similarity=0.106  Sum_probs=95.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||+|||+|.+...++..  +.+++++|+++++++.|++|.+.++ +..+++++..|..+                 
T Consensus        92 ~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~-----------------  151 (248)
T 2yvl_A           92 EKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFN-LGKNVKFFNVDFKD-----------------  151 (248)
T ss_dssp             TCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTT-CCTTEEEECSCTTT-----------------
T ss_pred             CCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcC-CCCcEEEEEcChhh-----------------
Confidence            458999999999998888776  7899999999999999999999884 76778887766321                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         .+    ..++.||+|++|||-          |             
T Consensus       152 -----------------------------------~~----~~~~~~D~v~~~~~~----------~-------------  169 (248)
T 2yvl_A          152 -----------------------------------AE----VPEGIFHAAFVDVRE----------P-------------  169 (248)
T ss_dssp             -----------------------------------SC----CCTTCBSEEEECSSC----------G-------------
T ss_pred             -----------------------------------cc----cCCCcccEEEECCcC----------H-------------
Confidence                                               00    013579999999871          1             


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEec
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFV  331 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~  331 (496)
                              ..++++...+++++|++........++..+.+.|++. +..+++.+..
T Consensus       170 --------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~~  216 (248)
T 2yvl_A          170 --------WHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY-FGNLEVVEIL  216 (248)
T ss_dssp             --------GGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT-EEEEEEEEEE
T ss_pred             --------HHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh-CCcceEEEee
Confidence                    1124555667889999988888667888888888887 7777766543

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.27  E-value=2e-10  Score=107.71  Aligned_cols=121  Identities=11%  Similarity=0.010  Sum_probs=93.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||||||+|.++..++..  +.+|+|+|+|+++++.|++|++.++ +.++++++.+|..+                 
T Consensus        56 ~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g-~~~~v~~~~~d~~~-----------------  115 (204)
T 3njr_A           56 GELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYG-LSPRMRAVQGTAPA-----------------  115 (204)
T ss_dssp             TCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEESCTTG-----------------
T ss_pred             CCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcC-CCCCEEEEeCchhh-----------------
Confidence            458999999999998888765  7899999999999999999999985 77689999887431                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         .+    ...+.||+|++++..                   +    
T Consensus       116 -----------------------------------~~----~~~~~~D~v~~~~~~-------------------~----  133 (204)
T 3njr_A          116 -----------------------------------AL----ADLPLPEAVFIGGGG-------------------S----  133 (204)
T ss_dssp             -----------------------------------GG----TTSCCCSEEEECSCC-------------------C----
T ss_pred             -----------------------------------hc----ccCCCCCEEEECCcc-------------------c----
Confidence                                               01    112469999988622                   1    


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEE
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVK  326 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk  326 (496)
                             .. ++++...+++++|++........++..+.+.+++.|+....
T Consensus       134 -------~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~~  176 (204)
T 3njr_A          134 -------QA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLLR  176 (204)
T ss_dssp             -------HH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEEE
T ss_pred             -------HH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEEE
Confidence                   23 56666778888998877666578899999999999975433

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.27  E-value=8e-11  Score=118.95  Aligned_cols=119  Identities=18%  Similarity=0.182  Sum_probs=89.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||||||+|.++..++...+.++++|+|+|+.+++.|++|++.++ +.  ++++.+|...                 
T Consensus       197 ~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~-~~--~~~~~~d~~~-----------------  256 (343)
T 2pjd_A          197 KGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANG-VE--GEVFASNVFS-----------------  256 (343)
T ss_dssp             CSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTT-CC--CEEEECSTTT-----------------
T ss_pred             CCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC-CC--CEEEEccccc-----------------
Confidence            358999999999999999888788899999999999999999999885 54  4555554220                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                            .   ..++||+|+|||||.....              .    
T Consensus       257 --------------------------------------~---~~~~fD~Iv~~~~~~~g~~--------------~----  277 (343)
T 2pjd_A          257 --------------------------------------E---VKGRFDMIISNPPFHDGMQ--------------T----  277 (343)
T ss_dssp             --------------------------------------T---CCSCEEEEEECCCCCSSSH--------------H----
T ss_pred             --------------------------------------c---ccCCeeEEEECCCcccCcc--------------C----
Confidence                                                  0   1357999999999974211              0    


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHH
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISK  316 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~  316 (496)
                         ...-..+++++....++++|++.+..........+.+.
T Consensus       278 ---~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~  315 (343)
T 2pjd_A          278 ---SLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDE  315 (343)
T ss_dssp             ---HHHHHHHHHHHHGGGEEEEEEEEEEEETTSSHHHHHHH
T ss_pred             ---CHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcHHHHHH
Confidence               23346778888899999999987766544455544443

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.27  E-value=4.9e-11  Score=117.57  Aligned_cols=144  Identities=14%  Similarity=0.043  Sum_probs=102.9

Q ss_pred             CCeEEEEcCchhHHHHHHH-HHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLG-ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa-~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|||||||+|.+...++ ...++.+++|+|+|+.+++.|++|+..++ +.++|+++.+|..+                
T Consensus       119 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~----------------  181 (305)
T 3ocj_A          119 GCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA-LAGQITLHRQDAWK----------------  181 (305)
T ss_dssp             TCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTST-TGGGEEEEECCGGG----------------
T ss_pred             CCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECchhc----------------
Confidence            4689999999999887775 45678999999999999999999999885 88889999887421                


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                          +    .. .+.||+|+||.+++.-..                  
T Consensus       182 ------------------------------------~----~~-~~~fD~v~~~~~~~~~~~------------------  202 (305)
T 3ocj_A          182 ------------------------------------L----DT-REGYDLLTSNGLNIYEPD------------------  202 (305)
T ss_dssp             ------------------------------------C----CC-CSCEEEEECCSSGGGCCC------------------
T ss_pred             ------------------------------------C----Cc-cCCeEEEEECChhhhcCC------------------
Confidence                                                0    01 268999999998874211                  


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEEEEEe-C-------------------------------------CcCcHHHHHHH
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWYTSMV-G-------------------------------------RKSNLKFLISK  316 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwftsmv-G-------------------------------------k~s~l~~L~~~  316 (496)
                           ..-...++++...+++++|++.... .                                     ...+.+.+.+.
T Consensus       203 -----~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (305)
T 3ocj_A          203 -----DARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQ  277 (305)
T ss_dssp             -----HHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHHHH
Confidence                 1113345555566666666654322 0                                     11368899999


Q ss_pred             HHHcCCeeEEEEEecCCCeeEEEEE
Q 010968          317 LRKVGVTIVKTTEFVQGQTCRWGLA  341 (496)
Q Consensus       317 L~~~g~~~vk~~ed~qG~t~Rw~lA  341 (496)
                      |++.||..+++..+..+. .+.++|
T Consensus       278 l~~aGF~~v~~~~~~~~~-~~~v~a  301 (305)
T 3ocj_A          278 LEEAGFTDLRFEDDRARL-FPTVIA  301 (305)
T ss_dssp             HHHTTCEEEEEECCTTSS-SCEEEE
T ss_pred             HHHCCCEEEEEEcccCce-eeEEEE
Confidence            999999988877654444 344444

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.26  E-value=6.2e-11  Score=122.76  Aligned_cols=78  Identities=18%  Similarity=0.144  Sum_probs=59.9

Q ss_pred             CCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcC-----------------------------
Q 010968           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLG-----------------------------  139 (496)
Q Consensus        89 P~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~-----------------------------  139 (496)
                      |-+++....+..+...         .....+||+|||||.+.+.++....+                             
T Consensus       178 pl~e~lAa~ll~~~~~---------~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a  248 (385)
T 3ldu_A          178 PIRETLAAGLIYLTPW---------KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDA  248 (385)
T ss_dssp             CCCHHHHHHHHHTSCC---------CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHhhCC---------CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHH
Confidence            6677766655544332         12357999999999987776654322                             


Q ss_pred             ---------CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          140 ---------WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       140 ---------~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                               .+|+|+|+|+.|++.|++|++.++ +.+.|++...|.
T Consensus       249 ~~~~~~~~~~~V~GvDid~~ai~~Ar~Na~~~g-l~~~i~~~~~D~  293 (385)
T 3ldu_A          249 FNKIDNESKFKIYGYDIDEESIDIARENAEIAG-VDEYIEFNVGDA  293 (385)
T ss_dssp             HHHSCCSCCCCEEEEESCHHHHHHHHHHHHHHT-CGGGEEEEECCG
T ss_pred             HHHhhccCCceEEEEECCHHHHHHHHHHHHHcC-CCCceEEEECCh
Confidence                     579999999999999999999995 888899998874

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.26  E-value=2.2e-10  Score=108.60  Aligned_cols=128  Identities=15%  Similarity=0.130  Sum_probs=95.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||||||+|.+...++...+. +++|+|+|+.+++.|++|+..++ +.++++++.+|...                 
T Consensus        47 ~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~-----------------  107 (257)
T 3f4k_A           47 DAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKAN-CADRVKGITGSMDN-----------------  107 (257)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCTTS-----------------
T ss_pred             CCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcC-CCCceEEEECChhh-----------------
Confidence            458999999999998888877654 99999999999999999999985 88889999887431                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         +  .  ..+++||+|+|+-.+..-                +    
T Consensus       108 -----------------------------------~--~--~~~~~fD~v~~~~~l~~~----------------~----  128 (257)
T 3f4k_A          108 -----------------------------------L--P--FQNEELDLIWSEGAIYNI----------------G----  128 (257)
T ss_dssp             -----------------------------------C--S--SCTTCEEEEEEESCSCCC----------------C----
T ss_pred             -----------------------------------C--C--CCCCCEEEEEecChHhhc----------------C----
Confidence                                               0  0  024689999999655431                0    


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeC--------------------CcCcHHHHHHHHHHcCCeeEEEE
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVG--------------------RKSNLKFLISKLRKVGVTIVKTT  328 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvG--------------------k~s~l~~L~~~L~~~g~~~vk~~  328 (496)
                             ...++++...+++++|++.....                    ...+...+.+.|++.|+..+.+.
T Consensus       129 -------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~  194 (257)
T 3f4k_A          129 -------FERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAHF  194 (257)
T ss_dssp             -------HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEEE
T ss_pred             -------HHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEEE
Confidence                   23456666677778887654321                    12356788999999999877754

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.25  E-value=1.6e-10  Score=113.45  Aligned_cols=89  Identities=11%  Similarity=-0.041  Sum_probs=66.4

Q ss_pred             hcCcEEEecCCC--eeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcH
Q 010968           72 DHGLNWWIPDGQ--LCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (496)
Q Consensus        72 ffGL~~~Vp~g~--LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~  149 (496)
                      ..|+.|.++++.  +.|+.    ......  ++..  +      ....+|||+|||+|.+++.++...+..+|+|+|+++
T Consensus        88 e~g~~f~~~~~~~f~~~~~----~~e~~~--~~~~--~------~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~  153 (272)
T 3a27_A           88 EYGCLFKLDVAKIMWSQGN----IEERKR--MAFI--S------NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNP  153 (272)
T ss_dssp             ETTEEEEEETTTSCCCGGG----HHHHHH--HHTS--C------CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCH
T ss_pred             ECCEEEEEechhEEECCCc----hHHHHH--HHHh--c------CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCH
Confidence            368899998887  56652    111111  1221  1      124589999999999999888876778999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          150 VALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       150 ~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      .|++.|++|++.|+ +. ++.++.+|.
T Consensus       154 ~av~~a~~n~~~n~-l~-~~~~~~~d~  178 (272)
T 3a27_A          154 TAYHYLCENIKLNK-LN-NVIPILADN  178 (272)
T ss_dssp             HHHHHHHHHHHHTT-CS-SEEEEESCG
T ss_pred             HHHHHHHHHHHHcC-CC-CEEEEECCh
Confidence            99999999999995 65 477887763

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.25  E-value=1.1e-10  Score=104.33  Aligned_cols=124  Identities=13%  Similarity=0.011  Sum_probs=92.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||||||+|.+...++...++.+++|+|+|+.+++.|++|++.++ +.+++ ++..|...                 
T Consensus        26 ~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~-~~~~d~~~-----------------   86 (178)
T 3hm2_A           26 HETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLG-VSDRI-AVQQGAPR-----------------   86 (178)
T ss_dssp             TEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTT-CTTSE-EEECCTTG-----------------
T ss_pred             CCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhC-CCCCE-EEecchHh-----------------
Confidence            458999999999998888888788999999999999999999999885 76678 76665321                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         .+..   ..+.||+|+|+.++..                      
T Consensus        87 -----------------------------------~~~~---~~~~~D~i~~~~~~~~----------------------  106 (178)
T 3hm2_A           87 -----------------------------------AFDD---VPDNPDVIFIGGGLTA----------------------  106 (178)
T ss_dssp             -----------------------------------GGGG---CCSCCSEEEECC-TTC----------------------
T ss_pred             -----------------------------------hhhc---cCCCCCEEEECCcccH----------------------
Confidence                                               0111   1267999999987731                      


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEE
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVK  326 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk  326 (496)
                              ..++++...+++++|++............+...+++.|.....
T Consensus       107 --------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (178)
T 3hm2_A          107 --------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTISS  149 (178)
T ss_dssp             --------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEEE
T ss_pred             --------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeEE
Confidence                    2245556667888888766555466778888899998865433

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.25  E-value=1.6e-10  Score=110.96  Aligned_cols=148  Identities=12%  Similarity=0.113  Sum_probs=103.7

Q ss_pred             CCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCc
Q 010968           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL  168 (496)
Q Consensus        89 P~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~r  168 (496)
                      |.....+.++.+++..  +      ....+|||||||+|.+...++.. +..+++|+|+|+.+++.|+++++.++ +.++
T Consensus        28 ~~~~~~~~~~l~~l~~--~------~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~   97 (267)
T 3kkz_A           28 PGSPEVTLKALSFIDN--L------TEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSG-LQNR   97 (267)
T ss_dssp             SCCHHHHHHHHTTCCC--C------CTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTT-CTTT
T ss_pred             CCCHHHHHHHHHhccc--C------CCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcC-CCcC
Confidence            3345555555544431  1      13468999999999998888766 77899999999999999999999885 8888


Q ss_pred             EEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEEC
Q 010968          169 IEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN  248 (496)
Q Consensus       169 I~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcN  248 (496)
                      |+++..|..+                                                    +  .  ...++||+|+|+
T Consensus        98 v~~~~~d~~~----------------------------------------------------~--~--~~~~~fD~i~~~  121 (267)
T 3kkz_A           98 VTGIVGSMDD----------------------------------------------------L--P--FRNEELDLIWSE  121 (267)
T ss_dssp             EEEEECCTTS----------------------------------------------------C--C--CCTTCEEEEEES
T ss_pred             cEEEEcChhh----------------------------------------------------C--C--CCCCCEEEEEEc
Confidence            9999887431                                                    0  0  024689999999


Q ss_pred             CCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeC--------------------CcC
Q 010968          249 PPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVG--------------------RKS  308 (496)
Q Consensus       249 PPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvG--------------------k~s  308 (496)
                      .++..- .                          ...++++...+++++|++.....                    ...
T Consensus       122 ~~~~~~-~--------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (267)
T 3kkz_A          122 GAIYNI-G--------------------------FERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEID  174 (267)
T ss_dssp             SCGGGT-C--------------------------HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCE
T ss_pred             CCceec-C--------------------------HHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCC
Confidence            887542 0                          13345555566677776543221                    122


Q ss_pred             cHHHHHHHHHHcCCeeEEEEE
Q 010968          309 NLKFLISKLRKVGVTIVKTTE  329 (496)
Q Consensus       309 ~l~~L~~~L~~~g~~~vk~~e  329 (496)
                      +...+.+.|++.|+..+.+..
T Consensus       175 ~~~~~~~~l~~aGf~~v~~~~  195 (267)
T 3kkz_A          175 TIPNQVAKIHKAGYLPVATFI  195 (267)
T ss_dssp             EHHHHHHHHHHTTEEEEEEEE
T ss_pred             CHHHHHHHHHHCCCEEEEEEE
Confidence            567888999999998877654

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.25  E-value=1.7e-10  Score=109.37  Aligned_cols=77  Identities=17%  Similarity=0.199  Sum_probs=62.4

Q ss_pred             CCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCc
Q 010968           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL  168 (496)
Q Consensus        89 P~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~r  168 (496)
                      |....++.++.+.+..         ....+|||||||+|.+...|+... +.+++|+|+|+.+++.|+++++.++ +.++
T Consensus        19 ~~~~~~~~~l~~~~~~---------~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~   87 (256)
T 1nkv_A           19 PFTEEKYATLGRVLRM---------KPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELG-VSER   87 (256)
T ss_dssp             SCCHHHHHHHHHHTCC---------CTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTT-CTTT
T ss_pred             CCCHHHHHHHHHhcCC---------CCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC-CCcc
Confidence            4556677777766642         124589999999999988887765 7899999999999999999999885 7778


Q ss_pred             EEEEEccC
Q 010968          169 IEIRKVDN  176 (496)
Q Consensus       169 I~~v~~d~  176 (496)
                      |+++.+|.
T Consensus        88 v~~~~~d~   95 (256)
T 1nkv_A           88 VHFIHNDA   95 (256)
T ss_dssp             EEEEESCC
T ss_pred             eEEEECCh
Confidence            99988874

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.24  E-value=2.4e-11  Score=134.97  Aligned_cols=135  Identities=19%  Similarity=0.207  Sum_probs=97.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCC-CcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHIS-ELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~-~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|||+|||+|.+++.++.. ...+|+++|+|+.|+++|++|++.|+ +. ++++++.+|..+                
T Consensus       540 g~~VLDlg~GtG~~sl~aa~~-ga~~V~aVD~s~~al~~a~~N~~~ng-l~~~~v~~i~~D~~~----------------  601 (703)
T 3v97_A          540 GKDFLNLFSYTGSATVHAGLG-GARSTTTVDMSRTYLEWAERNLRLNG-LTGRAHRLIQADCLA----------------  601 (703)
T ss_dssp             TCEEEEESCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTT-CCSTTEEEEESCHHH----------------
T ss_pred             CCcEEEeeechhHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcC-CCccceEEEecCHHH----------------
Confidence            358999999999998777652 23469999999999999999999995 76 689999887421                


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                          ++..   ..++||+|+||||||.......        +..+   
T Consensus       602 ------------------------------------~l~~---~~~~fD~Ii~DPP~f~~~~~~~--------~~~~---  631 (703)
T 3v97_A          602 ------------------------------------WLRE---ANEQFDLIFIDPPTFSNSKRME--------DAFD---  631 (703)
T ss_dssp             ------------------------------------HHHH---CCCCEEEEEECCCSBC---------------CCB---
T ss_pred             ------------------------------------HHHh---cCCCccEEEECCccccCCccch--------hHHH---
Confidence                                                1111   2468999999999997543211        0111   


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCe
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVT  323 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~  323 (496)
                          ....+.+++..+..+++++|++.+... ..+...-.+.+.+.|+.
T Consensus       632 ----~~~~~~~ll~~a~~~LkpgG~L~~s~~-~~~~~~~~~~l~~~g~~  675 (703)
T 3v97_A          632 ----VQRDHLALMKDLKRLLRAGGTIMFSNN-KRGFRMDLDGLAKLGLK  675 (703)
T ss_dssp             ----HHHHHHHHHHHHHHHEEEEEEEEEEEC-CTTCCCCHHHHHHTTEE
T ss_pred             ----HHHHHHHHHHHHHHhcCCCcEEEEEEC-CcccccCHHHHHHcCCc
Confidence                466789999999999999999877666 32333335667777764

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.24  E-value=1.7e-10  Score=119.82  Aligned_cols=78  Identities=15%  Similarity=0.113  Sum_probs=60.2

Q ss_pred             CCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcC-----------------------------
Q 010968           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLG-----------------------------  139 (496)
Q Consensus        89 P~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~-----------------------------  139 (496)
                      |-++++...+..+...         .....++|.+||||.|.+.++....+                             
T Consensus       177 pl~e~LAaall~l~~~---------~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a  247 (384)
T 3ldg_A          177 PIKENMAAAIILLSNW---------FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEA  247 (384)
T ss_dssp             CCCHHHHHHHHHHTTC---------CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHhCC---------CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHH
Confidence            6677766655544432         12357999999999998776654332                             


Q ss_pred             ---------CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          140 ---------WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       140 ---------~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                               .+++|+|+|+.|++.|++|++.++ +.++|+++..|.
T Consensus       248 ~~~~~~~~~~~v~GvDid~~al~~Ar~Na~~~g-l~~~I~~~~~D~  292 (384)
T 3ldg_A          248 DEQADYDIQLDISGFDFDGRMVEIARKNAREVG-LEDVVKLKQMRL  292 (384)
T ss_dssp             HHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCG
T ss_pred             HHhhhccCCceEEEEECCHHHHHHHHHHHHHcC-CCCceEEEECCh
Confidence                     469999999999999999999995 888899998874

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.23  E-value=1.3e-10  Score=120.80  Aligned_cols=78  Identities=18%  Similarity=0.155  Sum_probs=59.3

Q ss_pred             CCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcC-----------------------------
Q 010968           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLG-----------------------------  139 (496)
Q Consensus        89 P~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~-----------------------------  139 (496)
                      |-+++....+..+...         .....+||.|||||.+.+.++....+                             
T Consensus       184 pl~e~lAa~ll~l~~~---------~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a  254 (393)
T 3k0b_A          184 PIKETMAAALVLLTSW---------HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEA  254 (393)
T ss_dssp             SCCHHHHHHHHHHSCC---------CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHhCC---------CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHH
Confidence            6677666555544332         12357999999999997776654332                             


Q ss_pred             ---------CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          140 ---------WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       140 ---------~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                               .+|+|+|+|+.|++.|++|++.++ +.++|+++.+|.
T Consensus       255 ~~~~~~~~~~~V~GvDid~~al~~Ar~Na~~~g-l~~~I~~~~~D~  299 (393)
T 3k0b_A          255 EDLANYDQPLNIIGGDIDARLIEIAKQNAVEAG-LGDLITFRQLQV  299 (393)
T ss_dssp             HHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTT-CTTCSEEEECCG
T ss_pred             HHhhcccCCceEEEEECCHHHHHHHHHHHHHcC-CCCceEEEECCh
Confidence                     469999999999999999999995 888899998874

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.23  E-value=9e-11  Score=120.16  Aligned_cols=132  Identities=20%  Similarity=0.117  Sum_probs=96.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+||||| |+|.++..++...+..+|+|+|+|+.+++.|++|++.++ +. +|+++.+|...                 
T Consensus       173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g-~~-~v~~~~~D~~~-----------------  232 (373)
T 2qm3_A          173 NKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIG-YE-DIEIFTFDLRK-----------------  232 (373)
T ss_dssp             TCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHT-CC-CEEEECCCTTS-----------------
T ss_pred             CCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CC-CEEEEEChhhh-----------------
Confidence            45899999 999998888776666799999999999999999999985 76 79998887431                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         .+..  ...++||+|++||||...                     
T Consensus       233 -----------------------------------~l~~--~~~~~fD~Vi~~~p~~~~---------------------  254 (373)
T 2qm3_A          233 -----------------------------------PLPD--YALHKFDTFITDPPETLE---------------------  254 (373)
T ss_dssp             -----------------------------------CCCT--TTSSCBSEEEECCCSSHH---------------------
T ss_pred             -----------------------------------hchh--hccCCccEEEECCCCchH---------------------
Confidence                                               0000  013579999999998641                     


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCe-EEEEEeCC-cCcH---HHHHHHHH-HcCCeeEEEEEec
Q 010968          276 SGGERAFITRIIEDSVALKQTFR-WYTSMVGR-KSNL---KFLISKLR-KVGVTIVKTTEFV  331 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~g-wftsmvGk-~s~l---~~L~~~L~-~~g~~~vk~~ed~  331 (496)
                        |    ...+++++...++++| +..+.+.. ..+.   ..+.+.+. +.|+....+..++
T Consensus       255 --~----~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~  310 (373)
T 2qm3_A          255 --A----IRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVITDIIRNF  310 (373)
T ss_dssp             --H----HHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEEEEEEEEE
T ss_pred             --H----HHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence              1    2667777788888888 43344442 3555   67778887 8888655555443

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.22  E-value=1.5e-10  Score=115.65  Aligned_cols=60  Identities=10%  Similarity=0.122  Sum_probs=52.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ..+|||+|||+|.+++.+|. ....+|+|+|+||.|+++|++|++.|+ ++++|+++.+|..
T Consensus       126 g~~VlD~~aG~G~~~i~~a~-~g~~~V~avD~np~a~~~~~~N~~~N~-v~~~v~~~~~D~~  185 (278)
T 3k6r_A          126 DELVVDMFAGIGHLSLPIAV-YGKAKVIAIEKDPYTFKFLVENIHLNK-VEDRMSAYNMDNR  185 (278)
T ss_dssp             TCEEEETTCTTTTTTHHHHH-HTCCEEEEECCCHHHHHHHHHHHHHTT-CTTTEEEECSCTT
T ss_pred             CCEEEEecCcCcHHHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEeCcHH
Confidence            45899999999998877665 355799999999999999999999995 9999999988743

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.21  E-value=1.7e-11  Score=125.44  Aligned_cols=151  Identities=16%  Similarity=0.161  Sum_probs=98.0

Q ss_pred             hHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 010968           93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI  171 (496)
Q Consensus        93 nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~  171 (496)
                      ..+.++.+++..         ....+|||+|||+|.++..++.+. +..+++|+|||+.+++.|           .++++
T Consensus        26 ~l~~~~~~~~~~---------~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-----------~~~~~   85 (421)
T 2ih2_A           26 EVVDFMVSLAEA---------PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-----------PWAEG   85 (421)
T ss_dssp             HHHHHHHHHCCC---------CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-----------TTEEE
T ss_pred             HHHHHHHHhhcc---------CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-----------CCCcE
Confidence            455566666542         123489999999999988888776 578999999999999877           24778


Q ss_pred             EEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCC
Q 010968          172 RKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPF  251 (496)
Q Consensus       172 v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY  251 (496)
                      +.+|...                                                    +     ...++||+|+|||||
T Consensus        86 ~~~D~~~----------------------------------------------------~-----~~~~~fD~Ii~NPPy  108 (421)
T 2ih2_A           86 ILADFLL----------------------------------------------------W-----EPGEAFDLILGNPPY  108 (421)
T ss_dssp             EESCGGG----------------------------------------------------C-----CCSSCEEEEEECCCC
T ss_pred             EeCChhh----------------------------------------------------c-----CccCCCCEEEECcCc
Confidence            7776321                                                    0     013579999999999


Q ss_pred             ccCcccccC----CCCc-ccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCc----CcHHHHHHHHHHcCC
Q 010968          252 FESMEEAGL----NPKT-SCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRK----SNLKFLISKLRKVGV  322 (496)
Q Consensus       252 ~~s~eea~~----eP~~-al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~----s~l~~L~~~L~~~g~  322 (496)
                      +........    .+.. ...  .......+|....+..+++.+..+++++|++.+.+...    ...+.+.+.|.+.+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~  186 (421)
T 2ih2_A          109 GIVGEASKYPIHVFKAVKDLY--KKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGK  186 (421)
T ss_dssp             CCBSCTTTCSBCCCHHHHHHH--HHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSE
T ss_pred             cCcccccccccccCHHHHHHH--HHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhcCC
Confidence            875431100    0000 000  00000112234456677888888999999988777532    256788888888776

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.20  E-value=1e-10  Score=115.01  Aligned_cols=97  Identities=11%  Similarity=-0.003  Sum_probs=57.2

Q ss_pred             hCCCcccccccc---CCCCcceecCChhhHHHHHHHHHhHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCC
Q 010968           35 LYPSFEPFVFYS---RDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTS  111 (496)
Q Consensus        35 ~yP~f~~~v~~~---~~G~~~IDf~d~~A~r~Lt~aLL~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~  111 (496)
                      ..|.|..|+...   ..|.+.+--         +.  -+.|||+.+|          |.+...+.|+.+....       
T Consensus        26 ~~~~~~~~~~~~g~~~~~~~~~~i---------~g--~~~~~g~~~~----------~~~~~l~~~l~~~~~~-------   77 (281)
T 3bzb_A           26 QRSRVERYQSPAGAPLQCSVQVQT---------TQ--EHPLWTSHVW----------SGARALADTLCWQPEL-------   77 (281)
T ss_dssp             ---CEEEEECCSSCC-CCEEEEEC---------C-----------------------CHHHHHHHHHHHCGGG-------
T ss_pred             HHHHHHHHHhhccccccCCeEEEE---------CC--CCCCCCceee----------cHHHHHHHHHHhcchh-------
Confidence            345677787654   333333322         11  2568888776          4556667777654431       


Q ss_pred             CCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecC-cHHHHHHHHHHHHHC
Q 010968          112 RNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDM-TDVALEWAEKNVKSN  162 (496)
Q Consensus       112 ~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDI-s~~AL~~A~~N~~~N  162 (496)
                        ....+|||||||+|++++.++.. ...+|+|+|+ |+.+++.|++|++.|
T Consensus        78 --~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N  126 (281)
T 3bzb_A           78 --IAGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREH  126 (281)
T ss_dssp             --TTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTT
T ss_pred             --cCCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHh
Confidence              12358999999999998877653 3349999999 899999999999544

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.19  E-value=1.7e-10  Score=112.40  Aligned_cols=127  Identities=12%  Similarity=0.109  Sum_probs=98.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHH-hcCCeeEEecCcHHHHHHHHHHHHHC-CCCCCcEEEEEccCCCCCCcccccccCCccc
Q 010968          116 KVKGFDIGTGANCIYPLLGAS-LLGWSFVGSDMTDVALEWAEKNVKSN-PHISELIEIRKVDNSESTPSIQESLTGKSVQ  193 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~-~~~~~v~avDIs~~AL~~A~~N~~~N-~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~  193 (496)
                      ..+|||+|||+|.+...++.. .++.+++|+|+++.+++.|++|++.+ + + ++++++.+|..+               
T Consensus       111 ~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g-~-~~v~~~~~d~~~---------------  173 (275)
T 1yb2_A          111 GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD-I-GNVRTSRSDIAD---------------  173 (275)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC-C-TTEEEECSCTTT---------------
T ss_pred             cCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC-C-CcEEEEECchhc---------------
Confidence            458999999999999888876 46789999999999999999999887 5 3 468887765321               


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcc
Q 010968          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (496)
Q Consensus       194 ~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Em  273 (496)
                                                           .+     ++++||+|+||+|-.                     
T Consensus       174 -------------------------------------~~-----~~~~fD~Vi~~~~~~---------------------  190 (275)
T 1yb2_A          174 -------------------------------------FI-----SDQMYDAVIADIPDP---------------------  190 (275)
T ss_dssp             -------------------------------------CC-----CSCCEEEEEECCSCG---------------------
T ss_pred             -------------------------------------cC-----cCCCccEEEEcCcCH---------------------
Confidence                                                 01     135799999988721                     


Q ss_pred             cccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecC
Q 010968          274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQ  332 (496)
Q Consensus       274 v~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~q  332 (496)
                                ..++++...+++++|++.+......+.+.+.+.|++.|+..+++.+...
T Consensus       191 ----------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  239 (275)
T 1yb2_A          191 ----------WNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLETVELMK  239 (275)
T ss_dssp             ----------GGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEEEEEEE
T ss_pred             ----------HHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEEEEEec
Confidence                      1345566678889999877777566788899999999998888877653

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.19  E-value=4.2e-10  Score=105.43  Aligned_cols=58  Identities=21%  Similarity=0.291  Sum_probs=50.9

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      .+.+|||||||+|.+...++...|+.+++|+|+|+.+++.|++++..++    +++++.+|.
T Consensus        44 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~d~  101 (234)
T 3dtn_A           44 ENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL----KVKYIEADY  101 (234)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT----TEEEEESCT
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC----CEEEEeCch
Confidence            3469999999999999999888889999999999999999999987552    689988874

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.19  E-value=1.3e-10  Score=121.01  Aligned_cols=130  Identities=15%  Similarity=0.127  Sum_probs=88.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||+|||+|.+++.++..  +..|+|+|+|+.|++.|++|++.|+ +..+  +..+|..+                 
T Consensus       215 g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng-~~~~--~~~~D~~~-----------------  272 (393)
T 4dmg_A          215 GERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLG-LRVD--IRHGEALP-----------------  272 (393)
T ss_dssp             TCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHT-CCCE--EEESCHHH-----------------
T ss_pred             CCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhC-CCCc--EEEccHHH-----------------
Confidence            458999999999998887764  5669999999999999999999995 7643  44554210                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         ++...   .+.||+|+||||+|.......          .     
T Consensus       273 -----------------------------------~l~~~---~~~fD~Ii~dpP~f~~~~~~~----------~-----  299 (393)
T 4dmg_A          273 -----------------------------------TLRGL---EGPFHHVLLDPPTLVKRPEEL----------P-----  299 (393)
T ss_dssp             -----------------------------------HHHTC---CCCEEEEEECCCCCCSSGGGH----------H-----
T ss_pred             -----------------------------------HHHHh---cCCCCEEEECCCcCCCCHHHH----------H-----
Confidence                                               11111   223999999999986432210          0     


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEE-EEeCCcCcHHHHH----HHHHHcCC
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYT-SMVGRKSNLKFLI----SKLRKVGV  322 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwft-smvGk~s~l~~L~----~~L~~~g~  322 (496)
                        .....+.+++..+..+++++|++. +........+.+.    +.+.+.|.
T Consensus       300 --~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~  349 (393)
T 4dmg_A          300 --AMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGR  349 (393)
T ss_dssp             --HHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTC
T ss_pred             --HHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCC
Confidence              135567889999999999999875 4444333344433    34444554

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.18  E-value=1.6e-10  Score=118.75  Aligned_cols=116  Identities=17%  Similarity=0.219  Sum_probs=86.0

Q ss_pred             CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccccc
Q 010968          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDES  196 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~  196 (496)
                      .+|||+|||+|.+++.++..  ..+|+|+|+|+.+++.|++|++.|+ +.+ ++++.+|..+                  
T Consensus       211 ~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~-~~~-~~~~~~d~~~------------------  268 (382)
T 1wxx_A          211 ERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNG-LGN-VRVLEANAFD------------------  268 (382)
T ss_dssp             EEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTT-CTT-EEEEESCHHH------------------
T ss_pred             CeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcC-CCC-ceEEECCHHH------------------
Confidence            58999999999999888876  5689999999999999999999995 765 8888876321                  


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccccc
Q 010968          197 NMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCS  276 (496)
Q Consensus       197 ~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~  276 (496)
                                                        ++.......++||+|++|||++......      .    .      
T Consensus       269 ----------------------------------~~~~~~~~~~~fD~Ii~dpP~~~~~~~~------~----~------  298 (382)
T 1wxx_A          269 ----------------------------------LLRRLEKEGERFDLVVLDPPAFAKGKKD------V----E------  298 (382)
T ss_dssp             ----------------------------------HHHHHHHTTCCEEEEEECCCCSCCSTTS------H----H------
T ss_pred             ----------------------------------HHHHHHhcCCCeeEEEECCCCCCCChhH------H----H------
Confidence                                              1111111246899999999998643211      0    0      


Q ss_pred             CchHHHHHHHHHHHHHhhcCCeEEEEEeC
Q 010968          277 GGERAFITRIIEDSVALKQTFRWYTSMVG  305 (496)
Q Consensus       277 GGel~FI~riI~eS~~ll~~~gwftsmvG  305 (496)
                       ....-+..++..+..+++++|++.+...
T Consensus       299 -~~~~~~~~~l~~~~~~LkpgG~l~~~~~  326 (382)
T 1wxx_A          299 -RAYRAYKEVNLRAIKLLKEGGILATASC  326 (382)
T ss_dssp             -HHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             -HHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence             1345577888999999999998755443

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.17  E-value=6.6e-10  Score=105.39  Aligned_cols=127  Identities=13%  Similarity=0.101  Sum_probs=97.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHC-CCCCCcEEEEEccCCCCCCcccccccCCccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSN-PHISELIEIRKVDNSESTPSIQESLTGKSVQ  193 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N-~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~  193 (496)
                      ..+|||+|||+|.+...++... +..+++++|+++.+++.|++|++.+ +  ..+++++..|..+               
T Consensus        97 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g--~~~v~~~~~d~~~---------------  159 (258)
T 2pwy_A           97 GMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ--VENVRFHLGKLEE---------------  159 (258)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC--CCCEEEEESCGGG---------------
T ss_pred             CCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC--CCCEEEEECchhh---------------
Confidence            4589999999999988888774 5789999999999999999999876 4  3568888776321               


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcc
Q 010968          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (496)
Q Consensus       194 ~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Em  273 (496)
                                                           .  .+  +.+.||+|++|||-.                     
T Consensus       160 -------------------------------------~--~~--~~~~~D~v~~~~~~~---------------------  177 (258)
T 2pwy_A          160 -------------------------------------A--EL--EEAAYDGVALDLMEP---------------------  177 (258)
T ss_dssp             -------------------------------------C--CC--CTTCEEEEEEESSCG---------------------
T ss_pred             -------------------------------------c--CC--CCCCcCEEEECCcCH---------------------
Confidence                                                 0  00  135799999988621                     


Q ss_pred             cccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEec
Q 010968          274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFV  331 (496)
Q Consensus       274 v~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~  331 (496)
                                ..++++...+++++|++.+......++..+.+.|++.|+..+++.+..
T Consensus       178 ----------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~  225 (258)
T 2pwy_A          178 ----------WKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRLERVLEVG  225 (258)
T ss_dssp             ----------GGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEEEEEEEEEE
T ss_pred             ----------HHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCceEEEEEee
Confidence                      134555666788899988777756688899999999999888877653

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.17  E-value=1.5e-10  Score=110.31  Aligned_cols=130  Identities=11%  Similarity=0.104  Sum_probs=92.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ...|||||||+|.+...++...|+.+|+|+|+++.+++.|++|++.++ +. +|+++.+|..+                 
T Consensus        35 ~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~-l~-nv~~~~~Da~~-----------------   95 (218)
T 3dxy_A           35 APVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEG-LS-NLRVMCHDAVE-----------------   95 (218)
T ss_dssp             CCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTT-CS-SEEEECSCHHH-----------------
T ss_pred             CCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhC-CC-cEEEEECCHHH-----------------
Confidence            458999999999999999998899999999999999999999999885 65 48888776321                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEEC--CCCccCcccccCCCCcccCCCCCcc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN--PPFFESMEEAGLNPKTSCGGTPEEM  273 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcN--PPY~~s~eea~~eP~~al~G~~~Em  273 (496)
                                                         ++.... +++.||.|++|  +||........+     +       
T Consensus        96 -----------------------------------~l~~~~-~~~~~d~v~~~~~~p~~~~~~~~rr-----~-------  127 (218)
T 3dxy_A           96 -----------------------------------VLHKMI-PDNSLRMVQLFFPDPWHKARHNKRR-----I-------  127 (218)
T ss_dssp             -----------------------------------HHHHHS-CTTCEEEEEEESCCCCCSGGGGGGS-----S-------
T ss_pred             -----------------------------------HHHHHc-CCCChheEEEeCCCCccchhhhhhh-----h-------
Confidence                                               111111 24689999999  787654221110     0       


Q ss_pred             cccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHc
Q 010968          274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKV  320 (496)
Q Consensus       274 v~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~  320 (496)
                      +        ...++++...+++++|++.+...-..-.+.+.+.+...
T Consensus       128 ~--------~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~~  166 (218)
T 3dxy_A          128 V--------QVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSI  166 (218)
T ss_dssp             C--------SHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTS
T ss_pred             h--------hHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence            0        12356666778899999876665344456677777664

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.16  E-value=7.1e-10  Score=108.70  Aligned_cols=61  Identities=8%  Similarity=0.162  Sum_probs=53.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ..+|||||||+|.+...|+...  ++++|+|+|+|+.+|+.|+++++..+ +..+|+++.+|..
T Consensus        71 ~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~-~~~~v~~~~~D~~  133 (261)
T 4gek_A           71 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK-APTPVDVIEGDIR  133 (261)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSC-CSSCEEEEESCTT
T ss_pred             CCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhc-cCceEEEeecccc
Confidence            4589999999999988888764  57899999999999999999998874 7788999988743

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.15  E-value=4.2e-10  Score=103.55  Aligned_cols=52  Identities=21%  Similarity=0.058  Sum_probs=43.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ..+|||+|||+|.++..++.. +..+++|+|+|+.+++.|++|+.       +++++.+|
T Consensus        52 ~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~-------~~~~~~~d  103 (200)
T 1ne2_A           52 GRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG-------GVNFMVAD  103 (200)
T ss_dssp             TSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT-------TSEEEECC
T ss_pred             CCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC-------CCEEEECc
Confidence            458999999999998877755 34479999999999999999975       36777765

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.15  E-value=1.7e-10  Score=118.71  Aligned_cols=116  Identities=17%  Similarity=0.132  Sum_probs=84.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||+|||+|.+++.++.. ...+|+|+|+|+.+++.|++|++.|+ +.++++++.+|..+                 
T Consensus       218 ~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~-~~~~v~~~~~d~~~-----------------  278 (396)
T 2as0_A          218 GDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNG-VEDRMKFIVGSAFE-----------------  278 (396)
T ss_dssp             TCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEESCHHH-----------------
T ss_pred             CCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcC-CCccceEEECCHHH-----------------
Confidence            458999999999998888764 33589999999999999999999995 77689998886321                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         ++.......++||+|++||||+......-          .     
T Consensus       279 -----------------------------------~~~~~~~~~~~fD~Vi~dpP~~~~~~~~~----------~-----  308 (396)
T 2as0_A          279 -----------------------------------EMEKLQKKGEKFDIVVLDPPAFVQHEKDL----------K-----  308 (396)
T ss_dssp             -----------------------------------HHHHHHHTTCCEEEEEECCCCSCSSGGGH----------H-----
T ss_pred             -----------------------------------HHHHHHhhCCCCCEEEECCCCCCCCHHHH----------H-----
Confidence                                               11111112458999999999986432110          0     


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEE
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTS  302 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwfts  302 (496)
                        ....-+..++.++..+++++|++.+
T Consensus       309 --~~~~~~~~~l~~~~~~LkpgG~lv~  333 (396)
T 2as0_A          309 --AGLRAYFNVNFAGLNLVKDGGILVT  333 (396)
T ss_dssp             --HHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             --HHHHHHHHHHHHHHHhcCCCcEEEE
Confidence              1234577788888889999996543

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.15  E-value=1.6e-10  Score=117.76  Aligned_cols=99  Identities=10%  Similarity=0.016  Sum_probs=74.8

Q ss_pred             hHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcH
Q 010968           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (496)
Q Consensus        70 ~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~  149 (496)
                      ..+||..+.+...+++|+ +....|-+.+..+.... .      ..+.+|||||||+|+++..|+...+..+|+++|+|+
T Consensus        83 ~~~~g~~l~ldg~~~~~~-~de~~y~e~L~~l~l~~-~------~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~  154 (334)
T 1xj5_A           83 SATYGKVLVLDGVIQLTE-RDECAYQEMITHLPLCS-I------PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDK  154 (334)
T ss_dssp             ESSSCEEEEETTEEEEET-TTHHHHHHHHHHHHHTT-S------SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCH
T ss_pred             cCCCCeEEEECCEeecCc-CcchHHHHHHHHHHHhh-C------CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCH
Confidence            358999999999999998 44455665555442211 1      134689999999999998888766678999999999


Q ss_pred             HHHHHHHHHHHHC-CCC-CCcEEEEEccC
Q 010968          150 VALEWAEKNVKSN-PHI-SELIEIRKVDN  176 (496)
Q Consensus       150 ~AL~~A~~N~~~N-~~L-~~rI~~v~~d~  176 (496)
                      .+++.|++|+... .++ ..+|+++.+|.
T Consensus       155 ~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~  183 (334)
T 1xj5_A          155 MVVDVSKQFFPDVAIGYEDPRVNLVIGDG  183 (334)
T ss_dssp             HHHHHHHHHCHHHHGGGGSTTEEEEESCH
T ss_pred             HHHHHHHHHHHhhccccCCCcEEEEECCH
Confidence            9999999998652 013 35799988873

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.14  E-value=8.6e-10  Score=102.06  Aligned_cols=131  Identities=17%  Similarity=0.230  Sum_probs=97.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|||||||+|.+...++... +..+++|+|+|+.+++.|++++..++ +. +++++.+|...                
T Consensus        38 ~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~-~~~~~~~d~~~----------------   99 (219)
T 3dh0_A           38 GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG-LK-NVEVLKSEENK----------------   99 (219)
T ss_dssp             TCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHT-CT-TEEEEECBTTB----------------
T ss_pred             CCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC-CC-cEEEEeccccc----------------
Confidence            4589999999999988888876 67899999999999999999998874 54 69998887431                


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                          +  .  ..+++||+|+|+-.+..-               .+   
T Consensus       100 ------------------------------------~--~--~~~~~fD~v~~~~~l~~~---------------~~---  121 (219)
T 3dh0_A          100 ------------------------------------I--P--LPDNTVDFIFMAFTFHEL---------------SE---  121 (219)
T ss_dssp             ------------------------------------C--S--SCSSCEEEEEEESCGGGC---------------SS---
T ss_pred             ------------------------------------C--C--CCCCCeeEEEeehhhhhc---------------CC---
Confidence                                                0  0  024679999998655421               11   


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEEEEEe-C-----------CcCcHHHHHHHHHHcCCeeEEEEEe
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWYTSMV-G-----------RKSNLKFLISKLRKVGVTIVKTTEF  330 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwftsmv-G-----------k~s~l~~L~~~L~~~g~~~vk~~ed  330 (496)
                              ...++++...+++++|++.... .           ...+...+.+.|++.|+..+++...
T Consensus       122 --------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  181 (219)
T 3dh0_A          122 --------PLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEV  181 (219)
T ss_dssp             --------HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred             --------HHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEee
Confidence                    2456667777888888875532 1           1235789999999999988876544

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.14  E-value=2.8e-09  Score=98.45  Aligned_cols=139  Identities=11%  Similarity=0.070  Sum_probs=97.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||||||+|.+...|+..  +.+++|+|+|+.+++.|++++  +      +.++.+|...                 
T Consensus        44 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~--~------~~~~~~d~~~-----------------   96 (211)
T 3e23_A           44 GAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRL--G------RPVRTMLFHQ-----------------   96 (211)
T ss_dssp             TCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH--T------SCCEECCGGG-----------------
T ss_pred             CCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhc--C------CceEEeeecc-----------------
Confidence            458999999999998877754  679999999999999999987  1      3334443210                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                          +   . ..++||+|+|+..+..-.                    
T Consensus        97 ------------------------------------~---~-~~~~fD~v~~~~~l~~~~--------------------  116 (211)
T 3e23_A           97 ------------------------------------L---D-AIDAYDAVWAHACLLHVP--------------------  116 (211)
T ss_dssp             ------------------------------------C---C-CCSCEEEEEECSCGGGSC--------------------
T ss_pred             ------------------------------------C---C-CCCcEEEEEecCchhhcC--------------------
Confidence                                                0   0 246899999997664321                    


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCc--------------CcHHHHHHHHHHcC-CeeEEEEEe----cCCCee
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRK--------------SNLKFLISKLRKVG-VTIVKTTEF----VQGQTC  336 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~--------------s~l~~L~~~L~~~g-~~~vk~~ed----~qG~t~  336 (496)
                          ..-...++++...+++++|++...+...              -+.+.+.+.|++.| +..+.+.+.    ..+...
T Consensus       117 ----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~~~~~~~~~~  192 (211)
T 3e23_A          117 ----RDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESSEGKGFDQELA  192 (211)
T ss_dssp             ----HHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEEEECTTSCEE
T ss_pred             ----HHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEeccCCCCCCCCc
Confidence                0114566777777888888876654322              26889999999999 988776543    334456


Q ss_pred             EEEEEEeeC
Q 010968          337 RWGLAWSFV  345 (496)
Q Consensus       337 Rw~lAWsF~  345 (496)
                      +|+..+.-.
T Consensus       193 ~wl~~~~~~  201 (211)
T 3e23_A          193 QFLHVSVRK  201 (211)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEEEEec
Confidence            776665443

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.13  E-value=1.3e-09  Score=121.07  Aligned_cols=78  Identities=19%  Similarity=0.109  Sum_probs=60.9

Q ss_pred             CCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHh-------------------------------
Q 010968           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL-------------------------------  137 (496)
Q Consensus        89 P~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~-------------------------------  137 (496)
                      |-++++...+..+...         .....+||.+||||.|.+.++...                               
T Consensus       173 pl~e~LAa~ll~~~~~---------~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~e  243 (703)
T 3v97_A          173 PIKETLAAAIVMRSGW---------QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAE  243 (703)
T ss_dssp             SSCHHHHHHHHHHTTC---------CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHhhCC---------CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHH
Confidence            6777777666555432         123579999999999987766431                               


Q ss_pred             -----------cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          138 -----------LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       138 -----------~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                                 +..+++|+|+|+.|++.|++|++.++ +.+.|++..+|.
T Consensus       244 a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~ag-v~~~i~~~~~D~  292 (703)
T 3v97_A          244 AQTRARKGLAEYSSHFYGSDSDARVIQRARTNARLAG-IGELITFEVKDV  292 (703)
T ss_dssp             HHHHHHHHHHHCCCCEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEECCG
T ss_pred             HHHHhhhccccCCccEEEEECCHHHHHHHHHHHHHcC-CCCceEEEECCh
Confidence                       23589999999999999999999995 888899998874

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.13  E-value=6.8e-10  Score=103.17  Aligned_cols=78  Identities=21%  Similarity=0.196  Sum_probs=61.1

Q ss_pred             CCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCC-
Q 010968           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISE-  167 (496)
Q Consensus        89 P~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~-  167 (496)
                      |-......|+.+++...         ...+|||||||+|.+...|+...+..+++|+|+|+.+++.|++++..++ +.+ 
T Consensus        12 ~~~~~~~~~l~~~l~~~---------~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~   81 (219)
T 3jwg_A           12 NLNQQRLGTVVAVLKSV---------NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDR-LPEM   81 (219)
T ss_dssp             CHHHHHHHHHHHHHHHT---------TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGG-SCHH
T ss_pred             cchHHHHHHHHHHHhhc---------CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhc-cccc
Confidence            33344556666666531         2458999999999998888877677899999999999999999998774 554 


Q ss_pred             ---cEEEEEccC
Q 010968          168 ---LIEIRKVDN  176 (496)
Q Consensus       168 ---rI~~v~~d~  176 (496)
                         +|+++.+|.
T Consensus        82 ~~~~v~~~~~d~   93 (219)
T 3jwg_A           82 QRKRISLFQSSL   93 (219)
T ss_dssp             HHTTEEEEECCS
T ss_pred             cCcceEEEeCcc
Confidence               799988864

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.13  E-value=1.4e-09  Score=101.54  Aligned_cols=72  Identities=15%  Similarity=0.062  Sum_probs=54.9

Q ss_pred             HhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 010968           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI  171 (496)
Q Consensus        92 ~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~  171 (496)
                      ..+..++.+++....       ....+|||||||+|.+...++..  +.+++|+|+|+.+++.|+++...++ +  ++++
T Consensus        21 ~~~~~~~~~~l~~~~-------~~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~-~--~~~~   88 (246)
T 1y8c_A           21 KKWSDFIIEKCVENN-------LVFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQG-L--KPRL   88 (246)
T ss_dssp             HHHHHHHHHHHHTTT-------CCTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTT-C--CCEE
T ss_pred             HHHHHHHHHHHHHhC-------CCCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcC-C--CeEE
Confidence            445666777765321       13468999999999987777654  6799999999999999999998874 3  5777


Q ss_pred             EEcc
Q 010968          172 RKVD  175 (496)
Q Consensus       172 v~~d  175 (496)
                      +..|
T Consensus        89 ~~~d   92 (246)
T 1y8c_A           89 ACQD   92 (246)
T ss_dssp             ECCC
T ss_pred             Eecc
Confidence            7665

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.12  E-value=8.3e-10  Score=102.37  Aligned_cols=58  Identities=26%  Similarity=0.355  Sum_probs=48.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCC----CCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHI----SELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L----~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...++..  +.+++|+|+++.+++.|++++..++ +    ..+++++..|.
T Consensus        31 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~d~   92 (235)
T 3sm3_A           31 DDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPG-LNQKTGGKAEFKVENA   92 (235)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCS-CCSSSSCEEEEEECCT
T ss_pred             CCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcC-CccccCcceEEEEecc
Confidence            458999999999998888765  7899999999999999999998764 4    23578877764

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.12  E-value=3.6e-09  Score=101.32  Aligned_cols=59  Identities=12%  Similarity=0.147  Sum_probs=51.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...++... +.+++|+|+|+.+++.|++++..++ +.++++++.+|.
T Consensus        62 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~  120 (273)
T 3bus_A           62 GDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAG-LANRVTFSYADA  120 (273)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCT
T ss_pred             CCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEECcc
Confidence            4589999999999988887654 7899999999999999999999885 778899988874

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.12  E-value=1.7e-09  Score=100.12  Aligned_cols=56  Identities=23%  Similarity=0.230  Sum_probs=47.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...++...+  +++|+|+|+.+++.|++|.+.++   .+++++.+|.
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~   94 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRE---SNVEFIVGDA   94 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CCCEEEECCT
T ss_pred             CCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC---CCceEEECch
Confidence            45899999999999887776544  99999999999999999998873   5688888764

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.12  E-value=2.4e-09  Score=103.77  Aligned_cols=58  Identities=14%  Similarity=0.263  Sum_probs=50.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      +.+|||||||+|.+...|+..  +.+++|+|+|+.+++.|+++++.++ +..+++++.+|.
T Consensus        69 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~  126 (285)
T 4htf_A           69 KLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKG-VSDNMQFIHCAA  126 (285)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-C-CGGGEEEEESCG
T ss_pred             CCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC-CCcceEEEEcCH
Confidence            468999999999998877765  7899999999999999999999884 777899998874

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.12  E-value=7.1e-10  Score=103.10  Aligned_cols=78  Identities=13%  Similarity=0.160  Sum_probs=62.5

Q ss_pred             CCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCC-
Q 010968           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISE-  167 (496)
Q Consensus        89 P~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~-  167 (496)
                      |-......++.+.+...         ...+|||||||+|.+...|+...+..+++|+|+|+.+++.|++|+..++ +.+ 
T Consensus        12 ~~~~~~~~~l~~~l~~~---------~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~   81 (217)
T 3jwh_A           12 SLNQQRMNGVVAALKQS---------NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLR-LPRN   81 (217)
T ss_dssp             CHHHHHHHHHHHHHHHT---------TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCC-CCHH
T ss_pred             CHHHHHHHHHHHHHHhc---------CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhc-CCcc
Confidence            44455667777777542         3458999999999998888877677899999999999999999998774 654 


Q ss_pred             ---cEEEEEccC
Q 010968          168 ---LIEIRKVDN  176 (496)
Q Consensus       168 ---rI~~v~~d~  176 (496)
                         +++++.+|.
T Consensus        82 ~~~~v~~~~~d~   93 (217)
T 3jwh_A           82 QWERLQLIQGAL   93 (217)
T ss_dssp             HHTTEEEEECCT
T ss_pred             cCcceEEEeCCc
Confidence               799988864

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.10  E-value=3.1e-09  Score=104.22  Aligned_cols=59  Identities=14%  Similarity=0.070  Sum_probs=52.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.++..++...+ .+|+|+|+|+.+++.|++++..++ +.++|+++.+|.
T Consensus        73 ~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~  131 (302)
T 3hem_A           73 GMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVD-SPRRKEVRIQGW  131 (302)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSC-CSSCEEEEECCG
T ss_pred             cCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECCH
Confidence            45899999999999888887655 899999999999999999999985 888899988763

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.10  E-value=4.7e-11  Score=127.14  Aligned_cols=92  Identities=14%  Similarity=0.044  Sum_probs=70.8

Q ss_pred             HhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHH
Q 010968           71 HDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV  150 (496)
Q Consensus        71 ~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~  150 (496)
                      ++|+..+. .++.|+|+ +.+..|..+|.+.+..         ....+|||||||+|.++..++. .+..+|+|+|+++ 
T Consensus       125 ~~y~~~~~-~~~~L~d~-~~t~~~~~~il~~l~~---------~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~-  191 (480)
T 3b3j_A          125 QFYGYLSQ-QQNMMQDY-VRTGTYQRAILQNHTD---------FKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEAST-  191 (480)
T ss_dssp             EGGGCSCH-HHHHHHHH-HHHHHHHHHHHHTGGG---------TTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHH-
T ss_pred             HHHhhhcc-chhhhcCh-HhHHHHHHHHHHhhhh---------cCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHH-
Confidence            45555444 66778887 4556677666655532         1346899999999999887765 5667999999999 


Q ss_pred             HHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          151 ALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       151 AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      +++.|++|++.++ +.++|+++.+|.
T Consensus       192 ~l~~A~~~~~~~g-l~~~v~~~~~d~  216 (480)
T 3b3j_A          192 MAQHAEVLVKSNN-LTDRIVVIPGKV  216 (480)
T ss_dssp             HHHHHHHHHHHTT-CTTTEEEEESCT
T ss_pred             HHHHHHHHHHHcC-CCCcEEEEECch
Confidence            9999999999995 888999998874

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.10  E-value=9e-10  Score=110.51  Aligned_cols=147  Identities=12%  Similarity=0.044  Sum_probs=97.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|||+|||+|.....|+...+ ..+|+|+|+|+.+++.|++|+++++ +. +|+++.+|...                
T Consensus       119 g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g-~~-~v~~~~~D~~~----------------  180 (315)
T 1ixk_A          119 GEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG-VL-NVILFHSSSLH----------------  180 (315)
T ss_dssp             TCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT-CC-SEEEESSCGGG----------------
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhC-CC-eEEEEECChhh----------------
Confidence            45899999999999988888765 4899999999999999999999985 64 48887665321                


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                           +..   ..++||+|+||||+.....- ...|.....-..+. +
T Consensus       181 -------------------------------------~~~---~~~~fD~Il~d~Pcsg~g~~-~~~p~~~~~~~~~~-~  218 (315)
T 1ixk_A          181 -------------------------------------IGE---LNVEFDKILLDAPCTGSGTI-HKNPERKWNRTMDD-I  218 (315)
T ss_dssp             -------------------------------------GGG---GCCCEEEEEEECCTTSTTTC-C--------CCHHH-H
T ss_pred             -------------------------------------ccc---ccccCCEEEEeCCCCCcccc-cCChhHhhcCCHHH-H
Confidence                                                 000   13579999999998643221 12232211111110 0


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEEEE---EeCCcCcHHHHHHHHHHcCCee
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWYTS---MVGRKSNLKFLISKLRKVGVTI  324 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwfts---mvGk~s~l~~L~~~L~~~g~~~  324 (496)
                      .  .-.....++++++..+++++|++.+   -+....+-..+...|++.++..
T Consensus       219 ~--~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~~  269 (315)
T 1ixk_A          219 K--FCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVEL  269 (315)
T ss_dssp             H--HHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEE
T ss_pred             H--HHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCEE
Confidence            0  0134457889999999999887644   3555667667777888887643

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.09  E-value=1.5e-09  Score=108.47  Aligned_cols=175  Identities=10%  Similarity=0.012  Sum_probs=109.7

Q ss_pred             hcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHH
Q 010968           72 DHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA  151 (496)
Q Consensus        72 ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~A  151 (496)
                      +||..+.+........ .....|-+.+..+.... .      ..+.+|||||||+|.++..++...+..+++++|+|+.+
T Consensus        60 ~~g~~l~ldg~~~~~~-~de~~y~e~l~~~~l~~-~------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~  131 (304)
T 3bwc_A           60 PWGTVMALDGCIQVTD-YDEFVYHEVLGHTSLCS-H------PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEV  131 (304)
T ss_dssp             SCCEEEEETTEEEEET-TTHHHHHHHHHHHHHTT-S------SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHH
T ss_pred             ccceEEEECCeeeeec-ccchHHHHHHhhhhhhc-C------CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHH
Confidence            5677777764434433 22233444444432111 0      13468999999999998888765556799999999999


Q ss_pred             HHHHHHHHHH--CCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010968          152 LEWAEKNVKS--NPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP  229 (496)
Q Consensus       152 L~~A~~N~~~--N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~  229 (496)
                      ++.|++++..  ......+++++.+|...                                                   
T Consensus       132 i~~a~~~~~~~~~~~~~~~v~~~~~D~~~---------------------------------------------------  160 (304)
T 3bwc_A          132 MEQSKQHFPQISRSLADPRATVRVGDGLA---------------------------------------------------  160 (304)
T ss_dssp             HHHHHHHCHHHHGGGGCTTEEEEESCHHH---------------------------------------------------
T ss_pred             HHHHHHHhHHhhcccCCCcEEEEECcHHH---------------------------------------------------
Confidence            9999998742  11123579988876321                                                   


Q ss_pred             CccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCc--
Q 010968          230 PVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRK--  307 (496)
Q Consensus       230 ~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~--  307 (496)
                       ++...  ..++||+|++|+|+...       |...+               |-..++++....++++|++....+..  
T Consensus       161 -~~~~~--~~~~fDvIi~d~~~~~~-------~~~~l---------------~~~~~l~~~~~~LkpgG~lv~~~~~~~~  215 (304)
T 3bwc_A          161 -FVRQT--PDNTYDVVIIDTTDPAG-------PASKL---------------FGEAFYKDVLRILKPDGICCNQGESIWL  215 (304)
T ss_dssp             -HHHSS--CTTCEEEEEEECC-------------------------------CCHHHHHHHHHHEEEEEEEEEEECCTTT
T ss_pred             -HHHhc--cCCceeEEEECCCCccc-------cchhh---------------hHHHHHHHHHHhcCCCcEEEEecCCccc
Confidence             11000  24689999999876321       11111               11344556667889999987766532  


Q ss_pred             --CcHHHHHHHHHHcCCeeEEEEEe
Q 010968          308 --SNLKFLISKLRKVGVTIVKTTEF  330 (496)
Q Consensus       308 --s~l~~L~~~L~~~g~~~vk~~ed  330 (496)
                        .....+.+.|++.||..+++...
T Consensus       216 ~~~~~~~~~~~l~~~GF~~v~~~~~  240 (304)
T 3bwc_A          216 DLELIEKMSRFIRETGFASVQYALM  240 (304)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred             chHHHHHHHHHHHhCCCCcEEEEEe
Confidence              25678888999999988876643

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.09  E-value=6.2e-10  Score=110.88  Aligned_cols=171  Identities=13%  Similarity=0.076  Sum_probs=107.4

Q ss_pred             hcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHH
Q 010968           72 DHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA  151 (496)
Q Consensus        72 ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~A  151 (496)
                      .||..+.++..++++. +....|-+.+..+.... .      ..+.+|||||||+|+++..++...+..+++++|+|+.+
T Consensus        55 ~~g~~l~ldg~~~~~~-~de~~y~e~l~~~~l~~-~------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~  126 (296)
T 1inl_A           55 DLGVVFALDGITMTTE-KDEFMYHEMLAHVPMFL-H------PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLV  126 (296)
T ss_dssp             TTEEEEEETTEEEEET-TTHHHHHHHHHHHHHHH-S------SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHH
T ss_pred             CCcEEEEECCEEeecc-cchhHHHHHHhHHHHhc-C------CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHH
Confidence            4688888886666665 33233544444331110 0      12468999999999998888766567899999999999


Q ss_pred             HHHHHHHHHH--CCCC-CCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010968          152 LEWAEKNVKS--NPHI-SELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHG  228 (496)
Q Consensus       152 L~~A~~N~~~--N~~L-~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~  228 (496)
                      ++.|++|+..  ++ + ..+++++.+|...                                                  
T Consensus       127 ~~~a~~~~~~~~~~-~~~~~v~~~~~D~~~--------------------------------------------------  155 (296)
T 1inl_A          127 IEAARKYLKQTSCG-FDDPRAEIVIANGAE--------------------------------------------------  155 (296)
T ss_dssp             HHHHHHHCHHHHGG-GGCTTEEEEESCHHH--------------------------------------------------
T ss_pred             HHHHHHHhHhhccc-cCCCceEEEECcHHH--------------------------------------------------
Confidence            9999999864  21 3 3579998886321                                                  


Q ss_pred             CCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCc-
Q 010968          229 PPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRK-  307 (496)
Q Consensus       229 ~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~-  307 (496)
                        .+.   ...++||+|++|||.. .     ..|...+               +...++++...+++++|++....+.. 
T Consensus       156 --~l~---~~~~~fD~Ii~d~~~~-~-----~~~~~~l---------------~~~~~l~~~~~~LkpgG~lv~~~~~~~  209 (296)
T 1inl_A          156 --YVR---KFKNEFDVIIIDSTDP-T-----AGQGGHL---------------FTEEFYQACYDALKEDGVFSAETEDPF  209 (296)
T ss_dssp             --HGG---GCSSCEEEEEEEC----------------C---------------CSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred             --HHh---hCCCCceEEEEcCCCc-c-----cCchhhh---------------hHHHHHHHHHHhcCCCcEEEEEccCcc
Confidence              011   1135799999998742 0     0111110               12445566677899999998876532 


Q ss_pred             ---CcHHHHHHHHHHcCCeeEEEE
Q 010968          308 ---SNLKFLISKLRKVGVTIVKTT  328 (496)
Q Consensus       308 ---s~l~~L~~~L~~~g~~~vk~~  328 (496)
                         .....+.+.|++. +..+...
T Consensus       210 ~~~~~~~~~~~~l~~~-F~~v~~~  232 (296)
T 1inl_A          210 YDIGWFKLAYRRISKV-FPITRVY  232 (296)
T ss_dssp             TTHHHHHHHHHHHHHH-CSEEEEE
T ss_pred             cCHHHHHHHHHHHHHH-CCceEEE
Confidence               2355667777776 4455543

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.09  E-value=8.2e-10  Score=104.09  Aligned_cols=139  Identities=17%  Similarity=0.222  Sum_probs=94.9

Q ss_pred             CCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHH
Q 010968           82 GQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS  161 (496)
Q Consensus        82 g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~  161 (496)
                      ...+|+ |....++..+...+..          ...+|||||||+|.+...|+..  +.+|+|+|+|+.+++.|++|   
T Consensus        26 ~~~~~~-~~~~~l~~~~~~~~~~----------~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~---   89 (226)
T 3m33_A           26 ARVLSG-PDPELTFDLWLSRLLT----------PQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARAN---   89 (226)
T ss_dssp             CCEESS-SCTTHHHHHHHHHHCC----------TTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHH---
T ss_pred             ccccCC-CCHHHHHHHHHHhcCC----------CCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHh---
Confidence            345777 5555555444332211          2468999999999998777655  68999999999999999998   


Q ss_pred             CCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCC-CC
Q 010968          162 NPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRD-GE  240 (496)
Q Consensus       162 N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~-~e  240 (496)
                      .    .+++++..|....                                                    + +  .. ++
T Consensus        90 ~----~~~~~~~~d~~~~----------------------------------------------------~-~--~~~~~  110 (226)
T 3m33_A           90 A----PHADVYEWNGKGE----------------------------------------------------L-P--AGLGA  110 (226)
T ss_dssp             C----TTSEEEECCSCSS----------------------------------------------------C-C--TTCCC
T ss_pred             C----CCceEEEcchhhc----------------------------------------------------c-C--CcCCC
Confidence            2    2478887764210                                                    0 0  01 46


Q ss_pred             cEEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHc
Q 010968          241 QFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKV  320 (496)
Q Consensus       241 ~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~  320 (496)
                      +||+|+||+.           +                     ..++.+...+++++|++. ..+...+...+.+.+.+.
T Consensus       111 ~fD~v~~~~~-----------~---------------------~~~l~~~~~~LkpgG~l~-~~~~~~~~~~~~~~l~~~  157 (226)
T 3m33_A          111 PFGLIVSRRG-----------P---------------------TSVILRLPELAAPDAHFL-YVGPRLNVPEVPERLAAV  157 (226)
T ss_dssp             CEEEEEEESC-----------C---------------------SGGGGGHHHHEEEEEEEE-EEESSSCCTHHHHHHHHT
T ss_pred             CEEEEEeCCC-----------H---------------------HHHHHHHHHHcCCCcEEE-EeCCcCCHHHHHHHHHHC
Confidence            8999999931           1                     112334455778888876 445467888999999999


Q ss_pred             CCeeEEEE
Q 010968          321 GVTIVKTT  328 (496)
Q Consensus       321 g~~~vk~~  328 (496)
                      |+..+.+.
T Consensus       158 Gf~~~~~~  165 (226)
T 3m33_A          158 GWDIVAED  165 (226)
T ss_dssp             TCEEEEEE
T ss_pred             CCeEEEEE
Confidence            99866644

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.08  E-value=1.6e-09  Score=97.13  Aligned_cols=127  Identities=15%  Similarity=0.138  Sum_probs=91.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||||||+|.+...++..  +.+++|+|+++.+++.|++|..       ++.++..|...                 
T Consensus        47 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~-------~~~~~~~d~~~-----------------  100 (195)
T 3cgg_A           47 GAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFP-------EARWVVGDLSV-----------------  100 (195)
T ss_dssp             TCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCT-------TSEEEECCTTT-----------------
T ss_pred             CCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCC-------CCcEEEccccc-----------------
Confidence            458999999999998877765  6799999999999999998762       26677666321                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         +  .+  ..++||+|+|||+.+.....                  
T Consensus       101 -----------------------------------~--~~--~~~~~D~i~~~~~~~~~~~~------------------  123 (195)
T 3cgg_A          101 -----------------------------------D--QI--SETDFDLIVSAGNVMGFLAE------------------  123 (195)
T ss_dssp             -----------------------------------S--CC--CCCCEEEEEECCCCGGGSCH------------------
T ss_pred             -----------------------------------C--CC--CCCceeEEEECCcHHhhcCh------------------
Confidence                                               0  00  23579999999887643210                  


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCc--CcHHHHHHHHHHcCCeeEEEEEe
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRK--SNLKFLISKLRKVGVTIVKTTEF  330 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~--s~l~~L~~~L~~~g~~~vk~~ed  330 (496)
                           .-...++++...+++++|.+....+..  .....+.+.+.+.|+..+++...
T Consensus       124 -----~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  175 (195)
T 3cgg_A          124 -----DGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFES  175 (195)
T ss_dssp             -----HHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESS
T ss_pred             -----HHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecc
Confidence                 113556666677888888876655433  36889999999999987766544

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.08  E-value=2.4e-09  Score=102.97  Aligned_cols=59  Identities=19%  Similarity=0.209  Sum_probs=51.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...++...|+.+++|+|+++.+++.|++++..++ +. +++++..|.
T Consensus        38 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~-~~~~~~~d~   96 (276)
T 3mgg_A           38 GAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNG-IK-NVKFLQANI   96 (276)
T ss_dssp             TCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT-CC-SEEEEECCG
T ss_pred             CCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CC-CcEEEEccc
Confidence            468999999999999889888888999999999999999999999874 54 588887763

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.08  E-value=2.1e-09  Score=104.82  Aligned_cols=74  Identities=20%  Similarity=0.215  Sum_probs=58.3

Q ss_pred             HhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEE
Q 010968           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIE  170 (496)
Q Consensus        92 ~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~  170 (496)
                      ..++.++.+.+...        ..+.+|||||||+|..+..++..++ +.+++|+|+|+.+++.|++++...+ .  +++
T Consensus         7 ~~~~~~~~~~~~~~--------~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~--~v~   75 (284)
T 3gu3_A            7 DDYVSFLVNTVWKI--------TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP-Y--DSE   75 (284)
T ss_dssp             HHHHHHHHHTTSCC--------CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS-S--EEE
T ss_pred             hHHHHHHHHHHhcc--------CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC-C--ceE
Confidence            45666666555321        2356899999999999888888777 4899999999999999999998764 3  688


Q ss_pred             EEEccC
Q 010968          171 IRKVDN  176 (496)
Q Consensus       171 ~v~~d~  176 (496)
                      ++..|.
T Consensus        76 ~~~~d~   81 (284)
T 3gu3_A           76 FLEGDA   81 (284)
T ss_dssp             EEESCT
T ss_pred             EEEcch
Confidence            888774

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.08  E-value=9.8e-10  Score=103.38  Aligned_cols=130  Identities=18%  Similarity=0.105  Sum_probs=94.5

Q ss_pred             CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccccc
Q 010968          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDES  196 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~  196 (496)
                      .+|||||||+|.+...|+.  ++.+++|+|+|+.+++.|++++...+ ...+++++.+|..+                  
T Consensus        68 ~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~------------------  126 (235)
T 3lcc_A           68 GRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSP-KAEYFSFVKEDVFT------------------  126 (235)
T ss_dssp             EEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSG-GGGGEEEECCCTTT------------------
T ss_pred             CCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccC-CCcceEEEECchhc------------------
Confidence            5899999999998777753  57899999999999999999998763 55679998876431                  


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccccc
Q 010968          197 NMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCS  276 (496)
Q Consensus       197 ~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~  276 (496)
                                                        +     ...+.||+|+|+..+..-..             .+     
T Consensus       127 ----------------------------------~-----~~~~~fD~v~~~~~l~~~~~-------------~~-----  149 (235)
T 3lcc_A          127 ----------------------------------W-----RPTELFDLIFDYVFFCAIEP-------------EM-----  149 (235)
T ss_dssp             ----------------------------------C-----CCSSCEEEEEEESSTTTSCG-------------GG-----
T ss_pred             ----------------------------------C-----CCCCCeeEEEEChhhhcCCH-------------HH-----
Confidence                                              0     01358999999876643210             01     


Q ss_pred             CchHHHHHHHHHHHHHhhcCCeEEEEEeCCc----------CcHHHHHHHHHHcCCeeEEEEEe
Q 010968          277 GGERAFITRIIEDSVALKQTFRWYTSMVGRK----------SNLKFLISKLRKVGVTIVKTTEF  330 (496)
Q Consensus       277 GGel~FI~riI~eS~~ll~~~gwftsmvGk~----------s~l~~L~~~L~~~g~~~vk~~ed  330 (496)
                            ...++++...+++++|++.+..-..          -....+.+.|++.|+..+.+...
T Consensus       150 ------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  207 (235)
T 3lcc_A          150 ------RPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEEN  207 (235)
T ss_dssp             ------HHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEEC
T ss_pred             ------HHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEec
Confidence                  3456667777888888875432211          24688999999999988776554

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.07  E-value=2.4e-09  Score=101.21  Aligned_cols=57  Identities=9%  Similarity=-0.078  Sum_probs=48.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...|+... +..+++|+|+++.+++.+.++++.+    .+++++.+|.
T Consensus        78 ~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~----~~v~~~~~d~  135 (233)
T 2ipx_A           78 GAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR----TNIIPVIEDA  135 (233)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC----TTEEEECSCT
T ss_pred             CCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc----CCeEEEEccc
Confidence            4589999999999998888776 5689999999999999999999876    3588887764

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.07  E-value=3.3e-09  Score=99.23  Aligned_cols=54  Identities=22%  Similarity=0.320  Sum_probs=45.7

Q ss_pred             CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      .+|||||||+|.+...++..   .+++|+|+|+.+++.|++++..++   .+++++..|.
T Consensus        35 ~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~   88 (243)
T 3d2l_A           35 KRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETN---RHVDFWVQDM   88 (243)
T ss_dssp             CEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTT---CCCEEEECCG
T ss_pred             CeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcC---CceEEEEcCh
Confidence            58999999999987777654   799999999999999999998764   3578877763

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.07  E-value=7.8e-10  Score=105.50  Aligned_cols=77  Identities=8%  Similarity=-0.022  Sum_probs=60.9

Q ss_pred             CCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCC-
Q 010968           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHIS-  166 (496)
Q Consensus        89 P~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~-  166 (496)
                      |....++.++......         ....+|||||||+|..++.|+..++ +.+++++|+|+++++.|++|++.++ +. 
T Consensus        39 ~~~~~~l~~l~~~~~~---------~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g-~~~  108 (221)
T 3dr5_A           39 EMTGQLLTTLAATTNG---------NGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG-YSP  108 (221)
T ss_dssp             HHHHHHHHHHHHHSCC---------TTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTT-CCG
T ss_pred             HHHHHHHHHHHHhhCC---------CCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCc
Confidence            4555555555443321         1234899999999999999988775 7899999999999999999999985 77 


Q ss_pred             CcEEEEEcc
Q 010968          167 ELIEIRKVD  175 (496)
Q Consensus       167 ~rI~~v~~d  175 (496)
                      ++|+++.+|
T Consensus       109 ~~i~~~~gd  117 (221)
T 3dr5_A          109 SRVRFLLSR  117 (221)
T ss_dssp             GGEEEECSC
T ss_pred             CcEEEEEcC
Confidence            789998876

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.07  E-value=1.3e-09  Score=106.86  Aligned_cols=58  Identities=14%  Similarity=0.201  Sum_probs=49.0

Q ss_pred             CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCC--CcEEEEEccCC
Q 010968          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHIS--ELIEIRKVDNS  177 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~--~rI~~v~~d~~  177 (496)
                      .+|||||||+|.+...|+..  +.+|+|+|+|+.+++.|++++..++ +.  .+|+++.+|..
T Consensus        84 ~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~v~~~~~d~~  143 (299)
T 3g2m_A           84 GPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAP-ADVRDRCTLVQGDMS  143 (299)
T ss_dssp             SCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSC-HHHHTTEEEEECBTT
T ss_pred             CcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcc-cccccceEEEeCchh
Confidence            48999999999988877755  6899999999999999999998763 32  57999988753

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.06  E-value=9e-10  Score=117.16  Aligned_cols=144  Identities=10%  Similarity=0.029  Sum_probs=100.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|||+|||+|.+...|+...++ .+|+|+|+|+.+++.|++|+++++ +.  |.++.+|...                
T Consensus       102 g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G-~~--v~~~~~Da~~----------------  162 (464)
T 3m6w_A          102 GERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWG-AP--LAVTQAPPRA----------------  162 (464)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHC-CC--CEEECSCHHH----------------
T ss_pred             CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-Ce--EEEEECCHHH----------------
Confidence            458999999999999999988765 799999999999999999999985 65  7777665210                


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                           +...  ..++||.|++|||+.....- ...|.....-..+.+ 
T Consensus       163 -------------------------------------l~~~--~~~~FD~Il~D~PcSg~G~~-rr~pd~~~~~~~~~~-  201 (464)
T 3m6w_A          163 -------------------------------------LAEA--FGTYFHRVLLDAPCSGEGMF-RKDREAARHWGPSAP-  201 (464)
T ss_dssp             -------------------------------------HHHH--HCSCEEEEEEECCCCCGGGT-TTCTTSGGGCCTTHH-
T ss_pred             -------------------------------------hhhh--ccccCCEEEECCCcCCcccc-ccChHHhhhcCHHHH-
Confidence                                                 1100  13679999999999654321 234444332222210 


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEEE---EEeCCcCcHHHHHHHHHHcC
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWYT---SMVGRKSNLKFLISKLRKVG  321 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwft---smvGk~s~l~~L~~~L~~~g  321 (496)
                      ..  -.....++++++..+++++|++.   +-+....+-..+...|++.+
T Consensus       202 ~~--l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~~~~  249 (464)
T 3m6w_A          202 KR--MAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKAHP  249 (464)
T ss_dssp             HH--HHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCT
T ss_pred             HH--HHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHHHHCC
Confidence            00  12345789999999999988764   35565667777777887763

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.06  E-value=1.3e-09  Score=114.25  Aligned_cols=60  Identities=17%  Similarity=0.040  Sum_probs=48.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-------------cCCeeEEecCcHHHHHHHHHHHHHCCCCCC-cEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-------------LGWSFVGSDMTDVALEWAEKNVKSNPHISE-LIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-------------~~~~v~avDIs~~AL~~A~~N~~~N~~L~~-rI~~v~~d~  176 (496)
                      ..+|+|.|||||.+.+.++...             ...+++|+|+++.++++|+.|+..++ +.. .+.++.+|.
T Consensus       172 ~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g-~~~~~~~i~~gD~  245 (445)
T 2okc_A          172 GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHG-IGTDRSPIVCEDS  245 (445)
T ss_dssp             TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTT-CCSSCCSEEECCT
T ss_pred             CCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhC-CCcCCCCEeeCCC
Confidence            4589999999999977776653             45789999999999999999999885 542 466666663

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.06  E-value=2.4e-09  Score=103.29  Aligned_cols=129  Identities=13%  Similarity=0.079  Sum_probs=96.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHC-CCCCCcEEEEEccCCCCCCcccccccCCccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSN-PHISELIEIRKVDNSESTPSIQESLTGKSVQ  193 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N-~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~  193 (496)
                      ..+|||+|||+|.+...|+... +..+++++|+++++++.|++|++.+ +.+..+++++..|..+               
T Consensus       100 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~---------------  164 (280)
T 1i9g_A          100 GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD---------------  164 (280)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG---------------
T ss_pred             CCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHh---------------
Confidence            3589999999999988888764 5789999999999999999999875 3244678887766321               


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcc
Q 010968          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (496)
Q Consensus       194 ~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Em  273 (496)
                                                           .   . .+.+.||+|++|+|-          |.          
T Consensus       165 -------------------------------------~---~-~~~~~~D~v~~~~~~----------~~----------  183 (280)
T 1i9g_A          165 -------------------------------------S---E-LPDGSVDRAVLDMLA----------PW----------  183 (280)
T ss_dssp             -------------------------------------C---C-CCTTCEEEEEEESSC----------GG----------
T ss_pred             -------------------------------------c---C-CCCCceeEEEECCcC----------HH----------
Confidence                                                 0   0 013579999998861          10          


Q ss_pred             cccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHH-cCCeeEEEEEec
Q 010968          274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRK-VGVTIVKTTEFV  331 (496)
Q Consensus       274 v~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~-~g~~~vk~~ed~  331 (496)
                                 .++++...+++++|++.+......++..+...|++ .++..+++.+..
T Consensus       184 -----------~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~~~~~~~~~  231 (280)
T 1i9g_A          184 -----------EVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPRAWETL  231 (280)
T ss_dssp             -----------GGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCCCEEECCC
T ss_pred             -----------HHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcCCcEEEEEe
Confidence                       23566667888999988877766788888888888 788777766544

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.06  E-value=3.5e-09  Score=104.67  Aligned_cols=59  Identities=12%  Similarity=0.199  Sum_probs=52.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...|+... +.+|+|+|+++.+++.|++|++.++ +.++++++.+|.
T Consensus       118 ~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~  176 (312)
T 3vc1_A          118 DDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELR-IDDHVRSRVCNM  176 (312)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCT
T ss_pred             CCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC-CCCceEEEECCh
Confidence            4689999999999988887664 7899999999999999999999985 888899998874

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.05  E-value=8.3e-10  Score=108.13  Aligned_cols=143  Identities=12%  Similarity=0.016  Sum_probs=92.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|||+|||+|.....|+...++ .+|+|+|+++.+++.|++|+++++ +. +++++..|...                
T Consensus        84 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g-~~-~v~~~~~D~~~----------------  145 (274)
T 3ajd_A           84 DDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMG-VL-NTIIINADMRK----------------  145 (274)
T ss_dssp             TCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTT-CC-SEEEEESCHHH----------------
T ss_pred             cCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhC-CC-cEEEEeCChHh----------------
Confidence            458999999999999888887776 899999999999999999999985 64 68888776321                


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                          +........++||+|+|||||.....- ...|....    + -+
T Consensus       146 ------------------------------------~~~~~~~~~~~fD~Vl~d~Pcs~~g~~-~~~p~~~~----~-~~  183 (274)
T 3ajd_A          146 ------------------------------------YKDYLLKNEIFFDKILLDAPCSGNIIK-DKNRNVSE----E-DI  183 (274)
T ss_dssp             ------------------------------------HHHHHHHTTCCEEEEEEEECCC-------------H----H-HH
T ss_pred             ------------------------------------cchhhhhccccCCEEEEcCCCCCCccc-ccCCCCCH----H-HH
Confidence                                                000000013579999999999754321 12231110    0 00


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEEEEE---eCCcCcHHHHHHHHHHc
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWYTSM---VGRKSNLKFLISKLRKV  320 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwftsm---vGk~s~l~~L~~~L~~~  320 (496)
                      .  .-.....++++.+..+++++|++.+.   +....+-..+...|++.
T Consensus       184 ~--~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~~  230 (274)
T 3ajd_A          184 K--YCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKR  230 (274)
T ss_dssp             T--GGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHHC
T ss_pred             H--HHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHHhC
Confidence            0  01123577888888889998876442   44456666666667665

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.04  E-value=9.9e-09  Score=97.09  Aligned_cols=57  Identities=11%  Similarity=-0.106  Sum_probs=49.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.++..|+...+..+|+|+|+++.+++.|++|++.+    .++.++.+|.
T Consensus        75 ~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~v~~~~~d~  131 (230)
T 1fbn_A           75 DSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER----ENIIPILGDA  131 (230)
T ss_dssp             TCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC----TTEEEEECCT
T ss_pred             CCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC----CCeEEEECCC
Confidence            45899999999999988888766679999999999999999998754    4688888764

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.04  E-value=1.4e-09  Score=103.32  Aligned_cols=60  Identities=10%  Similarity=0.116  Sum_probs=53.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|..+..++...++.+|+++|+++.+++.|++|++.++ +.++|+++.+|.
T Consensus        72 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~  131 (232)
T 3ntv_A           72 VKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYH-FENQVRIIEGNA  131 (232)
T ss_dssp             CCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTT-CTTTEEEEESCG
T ss_pred             CCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECCH
Confidence            458999999999999888876678999999999999999999999985 877899998874

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.03  E-value=9.4e-09  Score=99.99  Aligned_cols=59  Identities=19%  Similarity=0.234  Sum_probs=51.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.....|+... +.+++|+|+++.+++.|+++++..+ +..+|+++.+|.
T Consensus        83 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~  141 (297)
T 2o57_A           83 QAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAG-LADNITVKYGSF  141 (297)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHT-CTTTEEEEECCT
T ss_pred             CCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEEcCc
Confidence            4689999999999988887664 6799999999999999999998874 777899988874

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.02  E-value=9.1e-10  Score=102.73  Aligned_cols=60  Identities=20%  Similarity=0.200  Sum_probs=53.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.....++..++ +.+++++|+++.+++.|++|++.++ +.++|+++.+|.
T Consensus        65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~  125 (225)
T 3tr6_A           65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAG-LSDKIGLRLSPA  125 (225)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEESCH
T ss_pred             CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCC-CCCceEEEeCCH
Confidence            35899999999999988888777 7899999999999999999999985 888899998863

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.02  E-value=1.1e-08  Score=97.70  Aligned_cols=57  Identities=19%  Similarity=0.207  Sum_probs=48.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...|+...  .+++|+|+|+.+++.|+++++.++ +. +++++.+|.
T Consensus        38 ~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~-~~-~v~~~~~d~   94 (260)
T 1vl5_A           38 NEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNG-HQ-QVEYVQGDA   94 (260)
T ss_dssp             CCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTT-CC-SEEEEECCC
T ss_pred             CCEEEEEeCCCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcC-CC-ceEEEEecH
Confidence            4689999999999887776554  499999999999999999998874 54 688888764

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.02  E-value=4.8e-09  Score=99.22  Aligned_cols=129  Identities=13%  Similarity=0.076  Sum_probs=93.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||||||+|.++..++... +.+++|+|+|+.+++.|++++...    .+|+++..|..+                 
T Consensus        56 ~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~~-----------------  113 (266)
T 3ujc_A           56 NSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGN----NKIIFEANDILT-----------------  113 (266)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSC----TTEEEEECCTTT-----------------
T ss_pred             CCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcC----CCeEEEECcccc-----------------
Confidence            4589999999999988888766 789999999999999999987643    468888887431                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         +  +  .++++||+|+|+-.+..-.                    
T Consensus       114 -----------------------------------~--~--~~~~~fD~v~~~~~l~~~~--------------------  134 (266)
T 3ujc_A          114 -----------------------------------K--E--FPENNFDLIYSRDAILALS--------------------  134 (266)
T ss_dssp             -----------------------------------C--C--CCTTCEEEEEEESCGGGSC--------------------
T ss_pred             -----------------------------------C--C--CCCCcEEEEeHHHHHHhcC--------------------
Confidence                                               0  0  0246899999986554320                    


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEe-C--------------------CcCcHHHHHHHHHHcCCeeEEEEE
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMV-G--------------------RKSNLKFLISKLRKVGVTIVKTTE  329 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmv-G--------------------k~s~l~~L~~~L~~~g~~~vk~~e  329 (496)
                          ..-...++++...+++++|++.... .                    .......+.+.|++.|+..+.+..
T Consensus       135 ----~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  205 (266)
T 3ujc_A          135 ----LENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSKD  205 (266)
T ss_dssp             ----HHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             ----hHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEEEe
Confidence                0123456666677777877765432 1                    123577899999999998777554

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.02  E-value=6.9e-09  Score=97.23  Aligned_cols=142  Identities=17%  Similarity=0.212  Sum_probs=98.1

Q ss_pred             cHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEE
Q 010968           91 RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIE  170 (496)
Q Consensus        91 R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~  170 (496)
                      +...+.++...+.           ...+|||||||+|.++..++..  +.+++|+|+++.+++.|+++..     ..+++
T Consensus        40 ~~~~~~~l~~~~~-----------~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~-----~~~~~  101 (242)
T 3l8d_A           40 RSTIIPFFEQYVK-----------KEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGE-----GPDLS  101 (242)
T ss_dssp             TTTHHHHHHHHSC-----------TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTC-----BTTEE
T ss_pred             HHHHHHHHHHHcC-----------CCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcc-----cCCce
Confidence            3455666665553           2358999999999998877765  7799999999999999988752     24688


Q ss_pred             EEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCC
Q 010968          171 IRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPP  250 (496)
Q Consensus       171 ~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPP  250 (496)
                      ++.+|..+                                                    +  .  ..+++||+|+|+-.
T Consensus       102 ~~~~d~~~----------------------------------------------------~--~--~~~~~fD~v~~~~~  125 (242)
T 3l8d_A          102 FIKGDLSS----------------------------------------------------L--P--FENEQFEAIMAINS  125 (242)
T ss_dssp             EEECBTTB----------------------------------------------------C--S--SCTTCEEEEEEESC
T ss_pred             EEEcchhc----------------------------------------------------C--C--CCCCCccEEEEcCh
Confidence            88887431                                                    0  0  02468999999865


Q ss_pred             CccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEe-CC--------------------cCc
Q 010968          251 FFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMV-GR--------------------KSN  309 (496)
Q Consensus       251 Y~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmv-Gk--------------------~s~  309 (496)
                      +..-               .+           ..+++++...+++++|++.... +.                    .-.
T Consensus       126 l~~~---------------~~-----------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (242)
T 3l8d_A          126 LEWT---------------EE-----------PLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMM  179 (242)
T ss_dssp             TTSS---------------SC-----------HHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCC
T ss_pred             Hhhc---------------cC-----------HHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCC
Confidence            5421               11           2345666667788888765544 11                    134


Q ss_pred             HHHHHHHHHHcCCeeEEEEEecC
Q 010968          310 LKFLISKLRKVGVTIVKTTEFVQ  332 (496)
Q Consensus       310 l~~L~~~L~~~g~~~vk~~ed~q  332 (496)
                      ...+.+.|++.|+..+.+.....
T Consensus       180 ~~~~~~~l~~~Gf~~~~~~~~~~  202 (242)
T 3l8d_A          180 PWEFEQLVKEQGFKVVDGIGVYK  202 (242)
T ss_dssp             HHHHHHHHHHTTEEEEEEEEEEC
T ss_pred             HHHHHHHHHHcCCEEEEeecccc
Confidence            56789999999998887665543

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.00  E-value=1.3e-09  Score=101.77  Aligned_cols=60  Identities=18%  Similarity=0.190  Sum_probs=54.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.....++..++ +.+++++|+++.+++.|++|++.++ +.++|+++.+|.
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~  119 (223)
T 3duw_A           59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERAN-LNDRVEVRTGLA  119 (223)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEESCH
T ss_pred             CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCH
Confidence            46899999999999998988877 7899999999999999999999985 888899998873

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.00  E-value=3.3e-09  Score=101.42  Aligned_cols=52  Identities=15%  Similarity=0.086  Sum_probs=43.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...|+..  +.+++|+|+|+.+++.|+++..       +++++.+|.
T Consensus        51 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~-------~~~~~~~d~  102 (263)
T 3pfg_A           51 AASLLDVACGTGMHLRHLADS--FGTVEGLELSADMLAIARRRNP-------DAVLHHGDM  102 (263)
T ss_dssp             CCEEEEETCTTSHHHHHHTTT--SSEEEEEESCHHHHHHHHHHCT-------TSEEEECCT
T ss_pred             CCcEEEeCCcCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC-------CCEEEECCh
Confidence            468999999999988777654  5689999999999999998753       477887764

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.00  E-value=1.2e-09  Score=115.99  Aligned_cols=147  Identities=14%  Similarity=0.054  Sum_probs=101.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|||+|||+|.+...|+...++ .+|+|+|+|+.+++.+++|+++++ +. +|.++..|...                
T Consensus       106 g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g-~~-nv~v~~~Da~~----------------  167 (456)
T 3m4x_A          106 GEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWG-VS-NAIVTNHAPAE----------------  167 (456)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHT-CS-SEEEECCCHHH----------------
T ss_pred             CCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC-ceEEEeCCHHH----------------
Confidence            458999999999999999887764 799999999999999999999985 65 47777665210                


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                           +...  ..+.||.|++|||+.....- ..+|.....-..+.+ 
T Consensus       168 -------------------------------------l~~~--~~~~FD~Il~DaPCSg~G~~-rr~p~~~~~~~~~~~-  206 (456)
T 3m4x_A          168 -------------------------------------LVPH--FSGFFDRIVVDAPCSGEGMF-RKDPNAIKEWTEESP-  206 (456)
T ss_dssp             -------------------------------------HHHH--HTTCEEEEEEECCCCCGGGT-TTCHHHHHHCCTTHH-
T ss_pred             -------------------------------------hhhh--ccccCCEEEECCCCCCcccc-ccCHHHhhhcCHHHH-
Confidence                                                 1110  13679999999998643221 123333221111100 


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEEE---EEeCCcCcHHHHHHHHHHcCCe
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWYT---SMVGRKSNLKFLISKLRKVGVT  323 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwft---smvGk~s~l~~L~~~L~~~g~~  323 (496)
                      .  .-....++|++++..+++++|.+.   +-+....+-..+...|.++++.
T Consensus       207 ~--~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~~~~  256 (456)
T 3m4x_A          207 L--YCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYPVT  256 (456)
T ss_dssp             H--HHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred             H--HHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHhCCCE
Confidence            0  012355689999999999988763   3556567777888888888743

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.00  E-value=1.4e-08  Score=93.04  Aligned_cols=136  Identities=11%  Similarity=0.008  Sum_probs=94.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||||||+|.+...|+..  +.+++|+|+++.+++.|+++.       .+++++.+|..+                 
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~d~~~-----------------   95 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTH-------PSVTFHHGTITD-----------------   95 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHC-------TTSEEECCCGGG-----------------
T ss_pred             CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC-------CCCeEEeCcccc-----------------
Confidence            458999999999998777765  679999999999999999872       146777665321                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                          + .  ..+++||+|+|+-.+..-.             ..+    
T Consensus        96 ------------------------------------~-~--~~~~~fD~v~~~~~l~~~~-------------~~~----  119 (203)
T 3h2b_A           96 ------------------------------------L-S--DSPKRWAGLLAWYSLIHMG-------------PGE----  119 (203)
T ss_dssp             ------------------------------------G-G--GSCCCEEEEEEESSSTTCC-------------TTT----
T ss_pred             ------------------------------------c-c--cCCCCeEEEEehhhHhcCC-------------HHH----
Confidence                                                0 0  1246899999986543210             011    


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCc---------------CcHHHHHHHHHHcCCeeEEEEEecCCCeeEEEE
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRK---------------SNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGL  340 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~---------------s~l~~L~~~L~~~g~~~vk~~ed~qG~t~Rw~l  340 (496)
                             ...++++...+++++|++.......               ...+.+.+.|++.|+..+.+... .++...++.
T Consensus       120 -------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~-~~~p~~~l~  191 (203)
T 3h2b_A          120 -------LPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWD-PRFPHAYLT  191 (203)
T ss_dssp             -------HHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEEC-TTSSEEEEE
T ss_pred             -------HHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEec-CCCcchhhh
Confidence                   3556677777888888876544212               34889999999999987775544 555555444


Q ss_pred             E
Q 010968          341 A  341 (496)
Q Consensus       341 A  341 (496)
                      .
T Consensus       192 ~  192 (203)
T 3h2b_A          192 A  192 (203)
T ss_dssp             E
T ss_pred             h
Confidence            3

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.99  E-value=2.3e-09  Score=102.62  Aligned_cols=60  Identities=17%  Similarity=0.172  Sum_probs=52.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC--------CCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN--------PHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N--------~~L~~rI~~v~~d~~  177 (496)
                      ..+|||||||+|.++..++...++++|+|+|+|+.+++.|++|++.+        + + .+++++.+|..
T Consensus        50 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~-~-~nv~~~~~D~~  117 (246)
T 2vdv_E           50 KVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHG-F-QNINVLRGNAM  117 (246)
T ss_dssp             CEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCST-T-TTEEEEECCTT
T ss_pred             CCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccC-C-CcEEEEeccHH
Confidence            46899999999999999988888889999999999999999999875        3 4 36889888743

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.99  E-value=6.7e-09  Score=100.07  Aligned_cols=77  Identities=16%  Similarity=0.083  Sum_probs=57.1

Q ss_pred             hHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEE
Q 010968           93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIR  172 (496)
Q Consensus        93 nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v  172 (496)
                      .+..|+...+....+      ....+|||||||+|.....++.. +..+++|+|+|+.+++.|++++..++ +..+++++
T Consensus        48 ~~~~~~~~~l~~~~~------~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~  119 (298)
T 1ri5_A           48 NANNFIKACLIRLYT------KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMK-RRFKVFFR  119 (298)
T ss_dssp             HHHHHHHHHHHHHHC------CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSC-CSSEEEEE
T ss_pred             HHHHHHHHHHHHHhC------CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcC-CCccEEEE
Confidence            345666655532111      13468999999999877766543 45599999999999999999998874 66789998


Q ss_pred             EccCC
Q 010968          173 KVDNS  177 (496)
Q Consensus       173 ~~d~~  177 (496)
                      .+|..
T Consensus       120 ~~d~~  124 (298)
T 1ri5_A          120 AQDSY  124 (298)
T ss_dssp             ESCTT
T ss_pred             ECCcc
Confidence            88743

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.99  E-value=1.5e-09  Score=111.11  Aligned_cols=56  Identities=13%  Similarity=0.124  Sum_probs=48.5

Q ss_pred             CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      .+|||+|||+|.+++.|+.  ...+|+|+|+++.|++.|++|++.|+ + ++++++.+|.
T Consensus       215 ~~vLDl~cG~G~~~l~la~--~~~~V~gvd~~~~ai~~a~~n~~~ng-~-~~v~~~~~d~  270 (369)
T 3bt7_A          215 GDLLELYCGNGNFSLALAR--NFDRVLATEIAKPSVAAAQYNIAANH-I-DNVQIIRMAA  270 (369)
T ss_dssp             SEEEEESCTTSHHHHHHGG--GSSEEEEECCCHHHHHHHHHHHHHTT-C-CSEEEECCCS
T ss_pred             CEEEEccCCCCHHHHHHHh--cCCEEEEEECCHHHHHHHHHHHHHcC-C-CceEEEECCH
Confidence            5799999999999987765  34689999999999999999999995 7 4799988764

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.99  E-value=5.1e-09  Score=103.24  Aligned_cols=135  Identities=10%  Similarity=0.101  Sum_probs=91.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHH--CCCC-CCcEEEEEccCCCCCCcccccccCCcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS--NPHI-SELIEIRKVDNSESTPSIQESLTGKSV  192 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~--N~~L-~~rI~~v~~d~~~~~p~~~~~~~~~~~  192 (496)
                      +.+|||||||+|.++..+++..+..+++++|||+++++.|++|+..  ++ + ..+++++.+|...              
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~-~~~~rv~v~~~D~~~--------------  140 (275)
T 1iy9_A           76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGK-LDDPRVDVQVDDGFM--------------  140 (275)
T ss_dssp             CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTT-TTSTTEEEEESCSHH--------------
T ss_pred             CCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccc-cCCCceEEEECcHHH--------------
Confidence            4689999999999988777654567999999999999999999854  22 3 4689999887421              


Q ss_pred             ccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCc
Q 010968          193 QDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEE  272 (496)
Q Consensus       193 ~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~E  272 (496)
                                                            .+.   ...++||+|++|+|+...       |...+.     
T Consensus       141 --------------------------------------~l~---~~~~~fD~Ii~d~~~~~~-------~~~~l~-----  167 (275)
T 1iy9_A          141 --------------------------------------HIA---KSENQYDVIMVDSTEPVG-------PAVNLF-----  167 (275)
T ss_dssp             --------------------------------------HHH---TCCSCEEEEEESCSSCCS-------CCCCCS-----
T ss_pred             --------------------------------------HHh---hCCCCeeEEEECCCCCCC-------cchhhh-----
Confidence                                                  111   124689999999986221       111111     


Q ss_pred             ccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCc----CcHHHHHHHHHHcCCeeEEEEE
Q 010968          273 MVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRK----SNLKFLISKLRKVGVTIVKTTE  329 (496)
Q Consensus       273 mv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~----s~l~~L~~~L~~~g~~~vk~~e  329 (496)
                            ...|    +++....++++|++....+..    ..+..+.+.|++. +..+....
T Consensus       168 ------~~~~----~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~  217 (275)
T 1iy9_A          168 ------TKGF----YAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI-FPITKLYT  217 (275)
T ss_dssp             ------TTHH----HHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEEEEEE
T ss_pred             ------HHHH----HHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHh-CCCeEEEE
Confidence                  1234    445567889999998876532    2356667777776 55555543

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=98.98  E-value=4.9e-09  Score=98.41  Aligned_cols=60  Identities=7%  Similarity=0.051  Sum_probs=53.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|..++.++..++ +.+|+++|+++.+++.|++|++.++ +.++|+++.+|.
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~  119 (221)
T 3u81_A           59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAG-LQDKVTILNGAS  119 (221)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT-CGGGEEEEESCH
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcC-CCCceEEEECCH
Confidence            45899999999999988887664 7899999999999999999999985 888899998873

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.98  E-value=9.4e-10  Score=109.72  Aligned_cols=84  Identities=13%  Similarity=0.028  Sum_probs=55.1

Q ss_pred             HhHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCc
Q 010968           69 LLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT  148 (496)
Q Consensus        69 L~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs  148 (496)
                      .+..||-+|-++           .+.+.+|.+.+..         ....+|||||||+|.+...|+..  +.+|+|+|+|
T Consensus        16 ~~k~~Gq~fl~~-----------~~i~~~i~~~~~~---------~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~   73 (299)
T 2h1r_A           16 NLYFQGQHLLKN-----------PGILDKIIYAAKI---------KSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDID   73 (299)
T ss_dssp             -------CEECC-----------HHHHHHHHHHHCC---------CTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSC
T ss_pred             chhccccceecC-----------HHHHHHHHHhcCC---------CCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECC
Confidence            344566666543           3455666666542         12458999999999998777654  5799999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          149 DVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       149 ~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      +.+++.|++|++.++ + .+++++.+|.
T Consensus        74 ~~~~~~a~~~~~~~~-~-~~v~~~~~D~   99 (299)
T 2h1r_A           74 SRMISEVKKRCLYEG-Y-NNLEVYEGDA   99 (299)
T ss_dssp             HHHHHHHHHHHHHTT-C-CCEEC----C
T ss_pred             HHHHHHHHHHHHHcC-C-CceEEEECch
Confidence            999999999998774 5 5688887764

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.97  E-value=7.4e-09  Score=97.93  Aligned_cols=131  Identities=10%  Similarity=0.023  Sum_probs=92.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||||||+|.++..|+... ..+++|+|+|+.+++.|++++..++  ..+++++..|...                 
T Consensus        80 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~~d~~~-----------------  139 (241)
T 2ex4_A           80 TSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEG--KRVRNYFCCGLQD-----------------  139 (241)
T ss_dssp             CSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGG--GGEEEEEECCGGG-----------------
T ss_pred             CCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcC--CceEEEEEcChhh-----------------
Confidence            5689999999999987776654 5699999999999999999987652  3468887776321                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         +    ....++||+|+|+-.+..-.                    
T Consensus       140 -----------------------------------~----~~~~~~fD~v~~~~~l~~~~--------------------  160 (241)
T 2ex4_A          140 -----------------------------------F----TPEPDSYDVIWIQWVIGHLT--------------------  160 (241)
T ss_dssp             -----------------------------------C----CCCSSCEEEEEEESCGGGSC--------------------
T ss_pred             -----------------------------------c----CCCCCCEEEEEEcchhhhCC--------------------
Confidence                                               0    00235799999984332110                    


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeC-C-------------cCcHHHHHHHHHHcCCeeEEEEE
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVG-R-------------KSNLKFLISKLRKVGVTIVKTTE  329 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvG-k-------------~s~l~~L~~~L~~~g~~~vk~~e  329 (496)
                          -.-+..++++...+++++|++.+... .             ..+.+.+.+.|++.|+..+++..
T Consensus       161 ----~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~  224 (241)
T 2ex4_A          161 ----DQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEER  224 (241)
T ss_dssp             ----HHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred             ----HHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeee
Confidence                01135677777788888888755221 0             11688999999999998777654

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.97  E-value=2.7e-09  Score=107.76  Aligned_cols=170  Identities=15%  Similarity=0.045  Sum_probs=106.3

Q ss_pred             hcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHH
Q 010968           72 DHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA  151 (496)
Q Consensus        72 ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~A  151 (496)
                      .||..+.+.....+|+ +....|-+.+..+.... .      ..+.+|||||||+|.++..++...+..+++++|||+.+
T Consensus        73 ~~g~~l~ldg~~q~~~-~de~~Y~e~l~~l~l~~-~------~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~  144 (314)
T 2b2c_A           73 TYGNVLVLDGIVQATE-RDEFSYQEMLAHLPMFA-H------PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMV  144 (314)
T ss_dssp             TTEEEEEETTEEEEES-SSSSHHHHHHHHHHHHH-S------SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHH
T ss_pred             CCCEEEEECCEeecCC-cchhHHHHHHHHHHHhh-C------CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHH
Confidence            5677788877677776 34344544443322110 0      13468999999999998888876567899999999999


Q ss_pred             HHHHHHHHHHCC-CC-CCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010968          152 LEWAEKNVKSNP-HI-SELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP  229 (496)
Q Consensus       152 L~~A~~N~~~N~-~L-~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~  229 (496)
                      ++.|++|+...+ ++ ..+|+++.+|...                                                   
T Consensus       145 i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~---------------------------------------------------  173 (314)
T 2b2c_A          145 IDVAKKFLPGMSCGFSHPKLDLFCGDGFE---------------------------------------------------  173 (314)
T ss_dssp             HHHHHHHCTTTSGGGGCTTEEEECSCHHH---------------------------------------------------
T ss_pred             HHHHHHHHHHhccccCCCCEEEEEChHHH---------------------------------------------------
Confidence            999999986530 13 4678888776321                                                   


Q ss_pred             CccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcC-
Q 010968          230 PVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKS-  308 (496)
Q Consensus       230 ~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s-  308 (496)
                       .+.   ...++||+|++|+|...       .|       ..        ..+-..++++...+++++|++....|... 
T Consensus       174 -~l~---~~~~~fD~Ii~d~~~~~-------~~-------~~--------~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~  227 (314)
T 2b2c_A          174 -FLK---NHKNEFDVIITDSSDPV-------GP-------AE--------SLFGQSYYELLRDALKEDGILSSQGESVWL  227 (314)
T ss_dssp             -HHH---HCTTCEEEEEECCC-----------------------------------HHHHHHHHEEEEEEEEEECCCTTT
T ss_pred             -HHH---hcCCCceEEEEcCCCCC-------Cc-------ch--------hhhHHHHHHHHHhhcCCCeEEEEECCCccc
Confidence             111   12467999999995210       11       00        01115566677788999999988765432 


Q ss_pred             ---cHHHHHHHHHHcCCeeEEE
Q 010968          309 ---NLKFLISKLRKVGVTIVKT  327 (496)
Q Consensus       309 ---~l~~L~~~L~~~g~~~vk~  327 (496)
                         ....+.+.+++. +..+..
T Consensus       228 ~~~~~~~~~~~l~~v-F~~v~~  248 (314)
T 2b2c_A          228 HLPLIAHLVAFNRKI-FPAVTY  248 (314)
T ss_dssp             CHHHHHHHHHHHHHH-CSEEEE
T ss_pred             CHHHHHHHHHHHHHH-CCcceE
Confidence               344566666665 444444

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.97  E-value=1.2e-08  Score=98.94  Aligned_cols=74  Identities=20%  Similarity=0.310  Sum_probs=56.8

Q ss_pred             CcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCC---
Q 010968           90 NRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHIS---  166 (496)
Q Consensus        90 ~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~---  166 (496)
                      ....|..|+.+++...         ...+|||||||+|.++..|+..  +.+|+|+|+|+.+++.|++|+.... ..   
T Consensus        41 ~~~~~~~~l~~~l~~~---------~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~  108 (293)
T 3thr_A           41 RTAEYKAWLLGLLRQH---------GCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRR-KEPAF  108 (293)
T ss_dssp             BCHHHHHHHHHHHHHT---------TCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT-TSHHH
T ss_pred             hHHHHHHHHHHHhccc---------CCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcc-ccccc
Confidence            4578888888888642         2468999999999998888765  5699999999999999999986542 21   


Q ss_pred             CcEEEEEcc
Q 010968          167 ELIEIRKVD  175 (496)
Q Consensus       167 ~rI~~v~~d  175 (496)
                      .++.+..+|
T Consensus       109 ~~~~~~~~d  117 (293)
T 3thr_A          109 DKWVIEEAN  117 (293)
T ss_dssp             HTCEEEECC
T ss_pred             ceeeEeecC
Confidence            346666554

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.97  E-value=1.2e-08  Score=94.37  Aligned_cols=139  Identities=17%  Similarity=0.123  Sum_probs=94.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||||||+|.+...|+..  +.+++|+|+++.+++.|++++..++    +++++.+|..+                 
T Consensus        52 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~d~~~-----------------  108 (216)
T 3ofk_A           52 VSNGLEIGCAAGAFTEKLAPH--CKRLTVIDVMPRAIGRACQRTKRWS----HISWAATDILQ-----------------  108 (216)
T ss_dssp             EEEEEEECCTTSHHHHHHGGG--EEEEEEEESCHHHHHHHHHHTTTCS----SEEEEECCTTT-----------------
T ss_pred             CCcEEEEcCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcccCC----CeEEEEcchhh-----------------
Confidence            468999999999998777655  3699999999999999999987642    68998887431                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         +.     ..++||+|+||..+..-.                    
T Consensus       109 -----------------------------------~~-----~~~~fD~v~~~~~l~~~~--------------------  128 (216)
T 3ofk_A          109 -----------------------------------FS-----TAELFDLIVVAEVLYYLE--------------------  128 (216)
T ss_dssp             -----------------------------------CC-----CSCCEEEEEEESCGGGSS--------------------
T ss_pred             -----------------------------------CC-----CCCCccEEEEccHHHhCC--------------------
Confidence                                               00     246899999996654211                    


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEe---------CCcCcHHHHHHHHHHcCCeeEEEEEecCC-CeeEEEEE
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMV---------GRKSNLKFLISKLRKVGVTIVKTTEFVQG-QTCRWGLA  341 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmv---------Gk~s~l~~L~~~L~~~g~~~vk~~ed~qG-~t~Rw~lA  341 (496)
                         ...-+.+++++...+++++|++.+..         ......+.+...+.+. +..+...+...+ ....|+++
T Consensus       129 ---~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~d~~l~  200 (216)
T 3ofk_A          129 ---DMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWGHVAGAETVITILTEA-LTEVERVQCQGQSADEDCLLA  200 (216)
T ss_dssp             ---SHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHTTCSCCHHHHHHHHHHH-SEEEEEEEEECSSTTCEEEEE
T ss_pred             ---CHHHHHHHHHHHHHHcCCCCEEEEEecCCCcchhhhhhhhHHHHHHHHHhh-ccceEEEeccCCccccchhHH
Confidence               12224567777788899999886633         2234455566666543 455555544333 23566665

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.97  E-value=1.6e-09  Score=106.84  Aligned_cols=47  Identities=15%  Similarity=0.184  Sum_probs=41.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN  162 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N  162 (496)
                      ..+|||||||+|.+...|+..++..+|+|+|||+.+++.|++|++.+
T Consensus        47 ~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~   93 (292)
T 3g07_A           47 GRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHY   93 (292)
T ss_dssp             TSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC---
T ss_pred             CCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhh
Confidence            46899999999999999998888899999999999999999998765

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.97  E-value=3.3e-08  Score=92.57  Aligned_cols=57  Identities=11%  Similarity=-0.015  Sum_probs=48.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||+|||+|.++..|+... +..+++|+|+++.+++.|++|++.+    .+++++.+|.
T Consensus        74 ~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~----~~v~~~~~d~  131 (227)
T 1g8a_A           74 GKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER----RNIVPILGDA  131 (227)
T ss_dssp             TCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC----TTEEEEECCT
T ss_pred             CCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc----CCCEEEEccC
Confidence            3589999999999998888775 4579999999999999999999764    4688888874

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.96  E-value=9.2e-09  Score=94.06  Aligned_cols=169  Identities=11%  Similarity=-0.010  Sum_probs=98.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc--CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL--GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ  193 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~--~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~  193 (496)
                      ..+|||||||+|.+...|+.+.+  +.+|+|+|+++.+           . + .+++++.+|..+. +.           
T Consensus        23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~-~-~~v~~~~~d~~~~-~~-----------   77 (201)
T 2plw_A           23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------P-I-PNVYFIQGEIGKD-NM-----------   77 (201)
T ss_dssp             TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------C-C-TTCEEEECCTTTT-SS-----------
T ss_pred             CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------C-C-CCceEEEccccch-hh-----------
Confidence            35899999999999999988877  6899999999831           1 2 3578888875420 00           


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCC
Q 010968          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYH--GPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPE  271 (496)
Q Consensus       194 ~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~--~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~  271 (496)
                        .++.-.+                 ..+.....  ...+...+  .+++||+|+||+++.......          .+.
T Consensus        78 --~~~~~~~-----------------~i~~~~~~~~~~~~~~~~--~~~~fD~v~~~~~~~~~g~~~----------~d~  126 (201)
T 2plw_A           78 --NNIKNIN-----------------YIDNMNNNSVDYKLKEIL--QDKKIDIILSDAAVPCIGNKI----------DDH  126 (201)
T ss_dssp             --CCC----------------------------CHHHHHHHHHH--TTCCEEEEEECCCCCCCSCHH----------HHH
T ss_pred             --hhhcccc-----------------ccccccchhhHHHHHhhc--CCCcccEEEeCCCcCCCCCcc----------cCH
Confidence              0000000                 00000000  00000001  245799999998654221000          000


Q ss_pred             cccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecCCCe---eEEEEEEeeCC
Q 010968          272 EMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQT---CRWGLAWSFVP  346 (496)
Q Consensus       272 Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t---~Rw~lAWsF~~  346 (496)
                           .........+++++..+++++|++.+.+....+...+...++. .+..+++.++..++.   .+|+++-.|..
T Consensus       127 -----~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~-~f~~v~~~~~~~~r~~s~e~y~v~~~~~~  198 (201)
T 2plw_A          127 -----LNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKG-MFQLVHTTKPKASRNESREIYLVCKNFLG  198 (201)
T ss_dssp             -----HHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHT-TEEEEEECCCC-----CCEEEEEEEEECC
T ss_pred             -----HHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHH-HHheEEEECCcccCCcCceEEEEEecCcc
Confidence                 0012234567888888999999998766556677888888876 477788888877653   57888876653

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.96  E-value=5.5e-09  Score=99.13  Aligned_cols=56  Identities=14%  Similarity=0.153  Sum_probs=45.4

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ...+|||||||+|.+...++...+ .+++|+|+|+.+++.|+++..     ..+++++.+|.
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~~d~   99 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGA-KKVLGIDLSERMLTEAKRKTT-----SPVVCYEQKAI   99 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHCC-----CTTEEEEECCG
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHhhc-----cCCeEEEEcch
Confidence            346899999999998887776533 399999999999999999875     23588887763

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.96  E-value=2.4e-09  Score=115.74  Aligned_cols=152  Identities=13%  Similarity=0.092  Sum_probs=91.1

Q ss_pred             CeEEEEcCchhHHHHHHHHHhc---------------CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCC
Q 010968          117 VKGFDIGTGANCIYPLLGASLL---------------GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTP  181 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~---------------~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p  181 (496)
                      .+|+|.|||||.+.+.++..+.               ..+++|+||++.++++|+.|+..++ +...|.++.+|...   
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g-i~~~i~i~~gDtL~---  321 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRG-IDFNFGKKNADSFL---  321 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTT-CCCBCCSSSCCTTT---
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhC-CCcccceeccchhc---
Confidence            4899999999998766654332               4689999999999999999999885 65444333343210   


Q ss_pred             cccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCccc---c
Q 010968          182 SIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEE---A  258 (496)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~ee---a  258 (496)
                                                            .         +.+     ...+||+|||||||......   .
T Consensus       322 --------------------------------------~---------~~~-----~~~~fD~Iv~NPPf~~~~~~~~~~  349 (544)
T 3khk_A          322 --------------------------------------D---------DQH-----PDLRADFVMTNPPFNMKDWWHEKL  349 (544)
T ss_dssp             --------------------------------------S---------CSC-----TTCCEEEEEECCCSSCCSCCCGGG
T ss_pred             --------------------------------------C---------ccc-----ccccccEEEECCCcCCccccchhh
Confidence                                                  0         000     23689999999999853211   1


Q ss_pred             cCCCCcccCCCCCcc---c--ccCchHHHHHHHHHHHHHhhcCCeEEEEEeCC-----c-CcHHHHHHHHHHcCCeeEEE
Q 010968          259 GLNPKTSCGGTPEEM---V--CSGGERAFITRIIEDSVALKQTFRWYTSMVGR-----K-SNLKFLISKLRKVGVTIVKT  327 (496)
Q Consensus       259 ~~eP~~al~G~~~Em---v--~~GGel~FI~riI~eS~~ll~~~gwftsmvGk-----~-s~l~~L~~~L~~~g~~~vk~  327 (496)
                      ...++... |...|.   +  ...+.+.|+..++    .+++++|...+.+..     . .....+.+.|-+.+. ...+
T Consensus       350 ~~d~r~~~-g~~~~~~~~~~~~~~~~~~Fl~~~l----~~Lk~gGr~aiVlP~g~L~~~~~~~~~iRk~Lle~~~-l~aI  423 (544)
T 3khk_A          350 ADDPRWTI-NTNGEKRILTPPTGNANFAWMLHML----YHLAPTGSMALLLANGSMSSNTNNEGEIRKTLVEQDL-VECM  423 (544)
T ss_dssp             TTCGGGEE-CCC--CEECCCCTTCTHHHHHHHHH----HTEEEEEEEEEEEETHHHHCCGGGHHHHHHHHHHTTC-EEEE
T ss_pred             hhhhhhhc-CcccccccccCCCcchhHHHHHHHH----HHhccCceEEEEecchhhhcCcchHHHHHHHHHhCCc-HhEE
Confidence            11222221 100000   1  1123566776655    467778876655531     1 245678888777664 2334


Q ss_pred             EEe
Q 010968          328 TEF  330 (496)
Q Consensus       328 ~ed  330 (496)
                      +.+
T Consensus       424 I~L  426 (544)
T 3khk_A          424 VAL  426 (544)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            443

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.96  E-value=2.1e-08  Score=100.95  Aligned_cols=60  Identities=10%  Similarity=0.096  Sum_probs=54.0

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ...+|||||||+|.+...++...|+++++++|+ +.+++.|++|+..++ +.++|+++.+|.
T Consensus       182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~  241 (374)
T 1qzz_A          182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAG-LADRVTVAEGDF  241 (374)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT-CTTTEEEEECCT
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcC-CCCceEEEeCCC
Confidence            346899999999999999998888999999999 999999999999885 777899988874

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.96  E-value=5.8e-09  Score=104.96  Aligned_cols=58  Identities=21%  Similarity=0.243  Sum_probs=49.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.++..++.. +..+|+|+|++ .+++.|++|++.|+ +.++|+++.+|.
T Consensus        39 ~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~~~-~~~~i~~~~~d~   96 (328)
T 1g6q_1           39 DKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVELNG-FSDKITLLRGKL   96 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHHTT-CTTTEEEEESCT
T ss_pred             CCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHHcC-CCCCEEEEECch
Confidence            358999999999987776654 44599999999 59999999999995 888999998874

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.96  E-value=2.5e-08  Score=96.52  Aligned_cols=58  Identities=10%  Similarity=0.055  Sum_probs=50.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ..+|||||||+|.+...++... +.+++|+|+|+.+++.|++++...+ +..+++++.+|
T Consensus        65 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~~-~~~~~~~~~~d  122 (287)
T 1kpg_A           65 GMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSE-NLRSKRVLLAG  122 (287)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCC-CCSCEEEEESC
T ss_pred             cCEEEEECCcccHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcC-CCCCeEEEECC
Confidence            4589999999999988887655 5699999999999999999998874 77789988775

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=98.96  E-value=3.8e-09  Score=101.65  Aligned_cols=60  Identities=12%  Similarity=0.107  Sum_probs=54.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|..+..++..++ +.+|+++|+++.+++.|++|++.++ +.++|+++.+|.
T Consensus        64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g-~~~~v~~~~~d~  124 (248)
T 3tfw_A           64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAG-VDQRVTLREGPA  124 (248)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTT-CTTTEEEEESCH
T ss_pred             CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCH
Confidence            46899999999999999988877 7899999999999999999999985 888899998873

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.96  E-value=5e-09  Score=106.14  Aligned_cols=58  Identities=17%  Similarity=0.197  Sum_probs=49.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.++..++.. ...+|+|+|+++ +++.|++|++.|+ +.++|+++.+|.
T Consensus        65 ~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~-~~~~i~~~~~d~  122 (340)
T 2fyt_A           65 DKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNK-LEDTITLIKGKI  122 (340)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTT-CTTTEEEEESCT
T ss_pred             CCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcC-CCCcEEEEEeeH
Confidence            458999999999988777654 445999999997 9999999999995 878999998874

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.95  E-value=1.7e-08  Score=95.19  Aligned_cols=130  Identities=12%  Similarity=0.009  Sum_probs=92.1

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ...+|||||||+|.++..|+... ..+++|+|+++.+++.|++++..+    .+++++..|...                
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~~----------------  151 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM----PVGKFILASMET----------------  151 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS----SEEEEEESCGGG----------------
T ss_pred             CCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccC----CceEEEEccHHH----------------
Confidence            35689999999999988777665 568999999999999999998653    468888776321                


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                           + .  ...++||+|+|+-.+..-..                  
T Consensus       152 -------------------------------------~-~--~~~~~fD~v~~~~~l~~~~~------------------  173 (254)
T 1xtp_A          152 -------------------------------------A-T--LPPNTYDLIVIQWTAIYLTD------------------  173 (254)
T ss_dssp             -------------------------------------C-C--CCSSCEEEEEEESCGGGSCH------------------
T ss_pred             -------------------------------------C-C--CCCCCeEEEEEcchhhhCCH------------------
Confidence                                                 0 0  02458999999764432100                  


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEEEEEeCC---------------cCcHHHHHHHHHHcCCeeEEEEE
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGR---------------KSNLKFLISKLRKVGVTIVKTTE  329 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwftsmvGk---------------~s~l~~L~~~L~~~g~~~vk~~e  329 (496)
                            .-...++++...+++++|++......               ..+.+.+.++|++.|+..+++..
T Consensus       174 ------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~  237 (254)
T 1xtp_A          174 ------ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF  237 (254)
T ss_dssp             ------HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred             ------HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeee
Confidence                  11456677777788888887554310               12468899999999998877654

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.95  E-value=4.4e-09  Score=106.82  Aligned_cols=59  Identities=19%  Similarity=0.288  Sum_probs=50.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ..+|||||||+|.++..++.. +..+|+|+|+|+ +++.|++|++.++ +.++|+++.+|..
T Consensus        67 ~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~-~l~~a~~~~~~~~-~~~~v~~~~~d~~  125 (349)
T 3q7e_A           67 DKVVLDVGSGTGILCMFAAKA-GARKVIGIECSS-ISDYAVKIVKANK-LDHVVTIIKGKVE  125 (349)
T ss_dssp             TCEEEEESCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTT-CTTTEEEEESCTT
T ss_pred             CCEEEEEeccchHHHHHHHHC-CCCEEEEECcHH-HHHHHHHHHHHcC-CCCcEEEEECcHH
Confidence            458999999999988777765 556999999995 9999999999995 8889999998753

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.95  E-value=4.9e-09  Score=96.42  Aligned_cols=41  Identities=22%  Similarity=0.307  Sum_probs=36.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHH
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN  158 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N  158 (496)
                      +.+|||||||+|.+...|+..  +++++|+|+++.+++.|+++
T Consensus        53 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~   93 (227)
T 3e8s_A           53 PERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA   93 (227)
T ss_dssp             CSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT
T ss_pred             CCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh
Confidence            468999999999988777655  78999999999999999887

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.95  E-value=2e-09  Score=105.81  Aligned_cols=71  Identities=14%  Similarity=0.122  Sum_probs=56.0

Q ss_pred             HhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 010968           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI  171 (496)
Q Consensus        92 ~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~  171 (496)
                      .+.+.+|.+.+...         ...+|||||||+|.+...|+.+  ..+|+|+|+|+++++.|++++...    .++++
T Consensus        15 ~~i~~~iv~~~~~~---------~~~~VLEIG~G~G~lt~~La~~--~~~V~avEid~~~~~~~~~~~~~~----~~v~~   79 (255)
T 3tqs_A           15 SFVLQKIVSAIHPQ---------KTDTLVEIGPGRGALTDYLLTE--CDNLALVEIDRDLVAFLQKKYNQQ----KNITI   79 (255)
T ss_dssp             HHHHHHHHHHHCCC---------TTCEEEEECCTTTTTHHHHTTT--SSEEEEEECCHHHHHHHHHHHTTC----TTEEE
T ss_pred             HHHHHHHHHhcCCC---------CcCEEEEEcccccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHhhC----CCcEE
Confidence            45666677766531         2458999999999998888754  479999999999999999998652    46999


Q ss_pred             EEccCC
Q 010968          172 RKVDNS  177 (496)
Q Consensus       172 v~~d~~  177 (496)
                      +.+|..
T Consensus        80 i~~D~~   85 (255)
T 3tqs_A           80 YQNDAL   85 (255)
T ss_dssp             EESCTT
T ss_pred             EEcchH
Confidence            999854

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.95  E-value=1.1e-08  Score=100.76  Aligned_cols=58  Identities=12%  Similarity=0.078  Sum_probs=50.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ..+|||||||+|.+...++... +++|+|+|+|+.+++.|++++..++ +.++++++.+|
T Consensus        91 ~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d  148 (318)
T 2fk8_A           91 GMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASID-TNRSRQVLLQG  148 (318)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSC-CSSCEEEEESC
T ss_pred             cCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECC
Confidence            4589999999999988887765 7899999999999999999999884 77789988776

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.94  E-value=3.2e-09  Score=99.28  Aligned_cols=60  Identities=17%  Similarity=0.112  Sum_probs=53.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|..+..++..++ +.+++++|+++.+++.|++|++.++ +.++|+++.+|.
T Consensus        70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g-~~~~i~~~~~d~  130 (229)
T 2avd_A           70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE-AEHKIDLRLKPA  130 (229)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT-CTTTEEEEESCH
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC-CCCeEEEEEcCH
Confidence            45899999999999888887766 6899999999999999999999985 777899988863

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.94  E-value=2.1e-09  Score=111.22  Aligned_cols=59  Identities=17%  Similarity=0.011  Sum_probs=51.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC---------------CCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN---------------PHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N---------------~~L~~rI~~v~~d~  176 (496)
                      ..+|||+|||+|++++.++.+.+..+|+++|+|++|++.|++|++.|               + +++ |+++.+|.
T Consensus        48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~g-l~~-i~v~~~Da  121 (378)
T 2dul_A           48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKG-EKT-IVINHDDA  121 (378)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEES-SSE-EEEEESCH
T ss_pred             CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccC-CCc-eEEEcCcH
Confidence            35899999999999999988877788999999999999999999998               5 544 88887763

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.94  E-value=6.9e-09  Score=97.07  Aligned_cols=94  Identities=12%  Similarity=0.157  Sum_probs=69.5

Q ss_pred             HhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHh-----cCCeeEEe
Q 010968           71 HDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL-----LGWSFVGS  145 (496)
Q Consensus        71 ~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~-----~~~~v~av  145 (496)
                      .+++..+.+..++.++. |   ....++.+.+... +      ....+|||||||+|.+...++...     +..+|+|+
T Consensus        47 ~y~d~~~~~~~~~~~~~-p---~~~~~~~~~l~~~-~------~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~v  115 (227)
T 2pbf_A           47 PYIDTPVYISHGVTISA-P---HMHALSLKRLINV-L------KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGL  115 (227)
T ss_dssp             TTSSSCEEEETTEEECC-H---HHHHHHHHHHTTT-S------CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEE
T ss_pred             cCCCCccccCCCCccCC-h---HHHHHHHHHHHhh-C------CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEE
Confidence            45667788888888887 2   3444555555321 1      124589999999999988888765     45799999


Q ss_pred             cCcHHHHHHHHHHHHHCCCC----CCcEEEEEccC
Q 010968          146 DMTDVALEWAEKNVKSNPHI----SELIEIRKVDN  176 (496)
Q Consensus       146 DIs~~AL~~A~~N~~~N~~L----~~rI~~v~~d~  176 (496)
                      |+++.+++.|++|++.++ +    ..+++++.+|.
T Consensus       116 D~~~~~~~~a~~~~~~~~-~~~~~~~~v~~~~~d~  149 (227)
T 2pbf_A          116 ERVKDLVNFSLENIKRDK-PELLKIDNFKIIHKNI  149 (227)
T ss_dssp             ESCHHHHHHHHHHHHHHC-GGGGSSTTEEEEECCG
T ss_pred             eCCHHHHHHHHHHHHHcC-ccccccCCEEEEECCh
Confidence            999999999999998763 3    35788887763

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.93  E-value=2e-08  Score=99.38  Aligned_cols=60  Identities=15%  Similarity=0.083  Sum_probs=53.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ..+|||||||+|.+...++...|+.+++++|++ .+++.|++++..++ +.++|+++..|..
T Consensus       166 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~-~~~~v~~~~~d~~  225 (335)
T 2r3s_A          166 PLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQG-VASRYHTIAGSAF  225 (335)
T ss_dssp             CSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHT-CGGGEEEEESCTT
T ss_pred             CCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcC-CCcceEEEecccc
Confidence            469999999999999999888889999999999 99999999998874 7788999988743

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.93  E-value=3.8e-09  Score=110.88  Aligned_cols=88  Identities=20%  Similarity=0.299  Sum_probs=67.9

Q ss_pred             hcCcEEEecCCCeeCCC-CCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHH
Q 010968           72 DHGLNWWIPDGQLCPTV-PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV  150 (496)
Q Consensus        72 ffGL~~~Vp~g~LiPrv-P~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~  150 (496)
                      ..|+.|.++++...... +.++.++.|+.+ +.           ...+|||+|||+|.+++.|+..  ..+|+|+|+|++
T Consensus       258 ~~g~~f~~~~~~F~q~n~~~~e~l~~~~~~-~~-----------~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~  323 (425)
T 2jjq_A          258 LDDVDYLIHPNSFFQTNSYQAVNLVRKVSE-LV-----------EGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEF  323 (425)
T ss_dssp             ETTEEEEECTTSCCCSBHHHHHHHHHHHHH-HC-----------CSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHH
T ss_pred             ECCEEEEEccccccccCHHHHHHHHHHhhc-cC-----------CCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHH
Confidence            46899999998877642 123344555554 21           2358999999999998888764  579999999999


Q ss_pred             HHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          151 ALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       151 AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      |++.|++|++.|+ +.  ++++.+|.
T Consensus       324 ai~~A~~n~~~ng-l~--v~~~~~d~  346 (425)
T 2jjq_A          324 AIEMARRNVEINN-VD--AEFEVASD  346 (425)
T ss_dssp             HHHHHHHHHHHHT-CC--EEEEECCT
T ss_pred             HHHHHHHHHHHcC-Cc--EEEEECCh
Confidence            9999999999985 65  88988874

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=98.93  E-value=3.4e-09  Score=99.95  Aligned_cols=60  Identities=22%  Similarity=0.169  Sum_probs=53.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.....++...++.+++++|+++.+++.|++|++.++ +.++|+++.+|.
T Consensus        55 ~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~  114 (233)
T 2gpy_A           55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALG-LESRIELLFGDA  114 (233)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTT-CTTTEEEECSCG
T ss_pred             CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECCH
Confidence            358999999999999999888888999999999999999999999985 777899887763

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.93  E-value=7.8e-09  Score=99.09  Aligned_cols=59  Identities=17%  Similarity=0.247  Sum_probs=51.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHH------HHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDV------ALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~------AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ..+|||||||+|.+...++... +..+++|+|+|+.      +++.|+++++.++ +..+|+++..|
T Consensus        44 ~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~-~~~~v~~~~~d  109 (275)
T 3bkx_A           44 GEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP-LGDRLTVHFNT  109 (275)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTST-TGGGEEEECSC
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcC-CCCceEEEECC
Confidence            4589999999999988888776 5689999999997      9999999999874 77789998775

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.93  E-value=1e-08  Score=99.35  Aligned_cols=56  Identities=16%  Similarity=0.218  Sum_probs=48.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.++..|+..  +.+|+|+|+|+.+++.|++++..++ +  +++++.+|.
T Consensus       121 ~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~-~--~~~~~~~d~  176 (286)
T 3m70_A          121 PCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKEN-L--NISTALYDI  176 (286)
T ss_dssp             SCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT-C--CEEEEECCG
T ss_pred             CCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcC-C--ceEEEEecc
Confidence            468999999999998887765  6799999999999999999999885 5  688888763

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.93  E-value=3.7e-09  Score=101.80  Aligned_cols=132  Identities=10%  Similarity=0.101  Sum_probs=88.7

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHH------CCCCCCcEEEEEccCCCCCCccccccc
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS------NPHISELIEIRKVDNSESTPSIQESLT  188 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~------N~~L~~rI~~v~~d~~~~~p~~~~~~~  188 (496)
                      ...+|||||||+|.+...|+...|++.|+|+|+++.+++.|++|++.      ++ + .+|+++.+|...          
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~-~-~nv~~~~~d~~~----------  113 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGG-F-QNIACLRSNAMK----------  113 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCC-C-TTEEEEECCTTT----------
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcC-C-CeEEEEECcHHH----------
Confidence            34689999999999999998888899999999999999999999864      32 3 468998887431          


Q ss_pred             CCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCC--CccCcccccCCCCccc
Q 010968          189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPP--FFESMEEAGLNPKTSC  266 (496)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPP--Y~~s~eea~~eP~~al  266 (496)
                                                                .+.... +.+.||.|++|-|  ++......        
T Consensus       114 ------------------------------------------~l~~~~-~~~~~D~v~~~~~dp~~k~~h~k--------  142 (235)
T 3ckk_A          114 ------------------------------------------HLPNFF-YKGQLTKMFFLFPDPHFKRTKHK--------  142 (235)
T ss_dssp             ------------------------------------------CHHHHC-CTTCEEEEEEESCC-----------------
T ss_pred             ------------------------------------------hhhhhC-CCcCeeEEEEeCCCchhhhhhhh--------
Confidence                                                      011111 2457999988743  32211000        


Q ss_pred             CCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcC
Q 010968          267 GGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVG  321 (496)
Q Consensus       267 ~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g  321 (496)
                          .        ......++++...+++++|++.+...-......+.+.+.+.+
T Consensus       143 ----r--------r~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~  185 (235)
T 3ckk_A          143 ----W--------RIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHP  185 (235)
T ss_dssp             --------------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTST
T ss_pred             ----h--------hhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCC
Confidence                0        001234667777789999998776654445566777777775

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.92  E-value=6.6e-09  Score=106.65  Aligned_cols=58  Identities=17%  Similarity=0.189  Sum_probs=50.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.++..++.. ...+|+|+|+| .+++.|+++++.|+ +.++|+++.+|.
T Consensus        64 ~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~~~-~~~~v~~~~~d~  121 (376)
T 3r0q_C           64 GKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHARALVKANN-LDHIVEVIEGSV  121 (376)
T ss_dssp             TCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHHTT-CTTTEEEEESCG
T ss_pred             CCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHHcC-CCCeEEEEECch
Confidence            468999999999988777654 33499999999 99999999999995 888999998874

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.92  E-value=2e-08  Score=93.84  Aligned_cols=54  Identities=19%  Similarity=0.215  Sum_probs=43.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCC-eeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~-~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...++..  +. +++|+|+|+.+++.|+++...+     +++++..|.
T Consensus        44 ~~~vLdiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~d~   98 (243)
T 3bkw_A           44 GLRIVDLGCGFGWFCRWAHEH--GASYVLGLDLSEKMLARARAAGPDT-----GITYERADL   98 (243)
T ss_dssp             TCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTSCSS-----SEEEEECCG
T ss_pred             CCEEEEEcCcCCHHHHHHHHC--CCCeEEEEcCCHHHHHHHHHhcccC-----CceEEEcCh
Confidence            458999999999998777654  45 9999999999999999876432     488877763

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.91  E-value=2.2e-08  Score=100.23  Aligned_cols=120  Identities=13%  Similarity=0.086  Sum_probs=86.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHH-------CCCC---CCcEEEEEccCCCCCCccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKS-------NPHI---SELIEIRKVDNSESTPSIQ  184 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~-------N~~L---~~rI~~v~~d~~~~~p~~~  184 (496)
                      ..+|||+|||+|.+...++... +..+++|+|+++.+++.|++|++.       | ++   ..+|+++.+|..+      
T Consensus       106 g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln-~~~~~~~~v~~~~~d~~~------  178 (336)
T 2b25_A          106 GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLS-HVEEWPDNVDFIHKDISG------  178 (336)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTT-CSSCCCCCEEEEESCTTC------
T ss_pred             CCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccc-cccccCCceEEEECChHH------
Confidence            4589999999999988888764 558999999999999999999985       3 23   2578998887432      


Q ss_pred             ccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCc
Q 010968          185 ESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKT  264 (496)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~  264 (496)
                                                                    ....+  ..+.||+|++|+|-.          ..
T Consensus       179 ----------------------------------------------~~~~~--~~~~fD~V~~~~~~~----------~~  200 (336)
T 2b25_A          179 ----------------------------------------------ATEDI--KSLTFDAVALDMLNP----------HV  200 (336)
T ss_dssp             ----------------------------------------------CC---------EEEEEECSSST----------TT
T ss_pred             ----------------------------------------------ccccc--CCCCeeEEEECCCCH----------HH
Confidence                                                          00011  134799999998621          00


Q ss_pred             ccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcC
Q 010968          265 SCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVG  321 (496)
Q Consensus       265 al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g  321 (496)
                                           ++++....++++|++.+..+...++..+.+.|++.+
T Consensus       201 ---------------------~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~  236 (336)
T 2b25_A          201 ---------------------TLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCE  236 (336)
T ss_dssp             ---------------------THHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHT
T ss_pred             ---------------------HHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhcC
Confidence                                 345666788899998888876777888888887643

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.91  E-value=3.6e-09  Score=104.67  Aligned_cols=73  Identities=15%  Similarity=0.135  Sum_probs=57.0

Q ss_pred             HhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 010968           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI  171 (496)
Q Consensus        92 ~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~  171 (496)
                      .+.+..|.+.+..         ....+|||||||+|.+...|+..  +.+++|+|+|+.+++.|++++..++ +..++++
T Consensus        14 ~~i~~~i~~~~~~---------~~~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~   81 (285)
T 1zq9_A           14 PLIINSIIDKAAL---------RPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTP-VASKLQV   81 (285)
T ss_dssp             HHHHHHHHHHTCC---------CTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTST-TGGGEEE
T ss_pred             HHHHHHHHHhcCC---------CCCCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHhcC-CCCceEE
Confidence            3455666665542         12458999999999998888765  5699999999999999999998764 5567999


Q ss_pred             EEccC
Q 010968          172 RKVDN  176 (496)
Q Consensus       172 v~~d~  176 (496)
                      +.+|.
T Consensus        82 ~~~D~   86 (285)
T 1zq9_A           82 LVGDV   86 (285)
T ss_dssp             EESCT
T ss_pred             EEcce
Confidence            98874

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.91  E-value=8.1e-09  Score=110.03  Aligned_cols=145  Identities=11%  Similarity=0.067  Sum_probs=98.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|||+|||+|.....|+...+ ..+|+|+|+|+.+++.|++|+++++ +. +|.++..|...                
T Consensus       118 g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g-~~-nv~~~~~D~~~----------------  179 (479)
T 2frx_A          118 PQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCG-IS-NVALTHFDGRV----------------  179 (479)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHT-CC-SEEEECCCSTT----------------
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CC-cEEEEeCCHHH----------------
Confidence            45899999999999999988765 4799999999999999999999985 64 58887766321                


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                           +...  ..+.||.|+|||||.....- ...|.....-... -+
T Consensus       180 -------------------------------------~~~~--~~~~fD~Il~D~PcSg~G~~-~~~pd~~~~~~~~-~~  218 (479)
T 2frx_A          180 -------------------------------------FGAA--VPEMFDAILLDAPCSGEGVV-RKDPDALKNWSPE-SN  218 (479)
T ss_dssp             -------------------------------------HHHH--STTCEEEEEEECCCCCGGGG-GTCTTSSSSCCHH-HH
T ss_pred             -------------------------------------hhhh--ccccCCEEEECCCcCCcccc-cCCHHHHhhcCHh-HH
Confidence                                                 1110  13579999999999654321 1234322111111 00


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEEEE---EeCCcCcHHHHHHHHHHcC
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWYTS---MVGRKSNLKFLISKLRKVG  321 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwfts---mvGk~s~l~~L~~~L~~~g  321 (496)
                      .  +-..+..++++++..+++++|.+.+   -+....+-..+...|++.+
T Consensus       219 ~--~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~~~  266 (479)
T 2frx_A          219 Q--EIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYP  266 (479)
T ss_dssp             H--HHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHHST
T ss_pred             H--HHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHHHCC
Confidence            0  0123456789999999999887643   3555567666777787775

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.91  E-value=1.5e-08  Score=88.75  Aligned_cols=149  Identities=11%  Similarity=-0.001  Sum_probs=97.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|||+|||+|.+...++..+ ++.+++|+|+++ +++.            .+++++..|..+.               
T Consensus        23 ~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~------------~~~~~~~~d~~~~---------------   74 (180)
T 1ej0_A           23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI------------VGVDFLQGDFRDE---------------   74 (180)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC------------TTEEEEESCTTSH---------------
T ss_pred             CCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc------------CcEEEEEcccccc---------------
Confidence            4589999999999998888775 568999999999 6432            3578877764310               


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc---cccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCC
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPV---LVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPE  271 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~i---l~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~  271 (496)
                                                         +.   +.... ..++||+|+||+|+........          ++
T Consensus        75 -----------------------------------~~~~~~~~~~-~~~~~D~i~~~~~~~~~~~~~~----------~~  108 (180)
T 1ej0_A           75 -----------------------------------LVMKALLERV-GDSKVQVVMSDMAPNMSGTPAV----------DI  108 (180)
T ss_dssp             -----------------------------------HHHHHHHHHH-TTCCEEEEEECCCCCCCSCHHH----------HH
T ss_pred             -----------------------------------hhhhhhhccC-CCCceeEEEECCCccccCCCcc----------ch
Confidence                                               00   00000 2358999999999864321100          00


Q ss_pred             cccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecCCC---eeEEEEEEee
Q 010968          272 EMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQ---TCRWGLAWSF  344 (496)
Q Consensus       272 Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~---t~Rw~lAWsF  344 (496)
                           --...+...++++...+++++|++.+......+...+.+.+++. +..+.+.+...++   ...|+++-.|
T Consensus       109 -----~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (180)
T 1ej0_A          109 -----PRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSL-FTKVKVRKPDSSRARSREVYIVATGR  178 (180)
T ss_dssp             -----HHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHH-EEEEEEECCTTSCTTCCEEEEEEEEE
T ss_pred             -----HHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHHh-hhhEEeecCCcccccCceEEEEEccC
Confidence                 00123457788888888999998877665577888888888875 6666665544433   2455555443

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.91  E-value=2.9e-08  Score=94.05  Aligned_cols=57  Identities=18%  Similarity=0.226  Sum_probs=47.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...++...  .+++|+|+++.+++.|++++..++ +. +++++.+|.
T Consensus        22 ~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~-~~-~v~~~~~d~   78 (239)
T 1xxl_A           22 EHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKG-VE-NVRFQQGTA   78 (239)
T ss_dssp             TCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHT-CC-SEEEEECBT
T ss_pred             CCEEEEEccCcCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcC-CC-CeEEEeccc
Confidence            4689999999999887776543  599999999999999999998774 53 688887764

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.90  E-value=6.6e-09  Score=102.48  Aligned_cols=132  Identities=13%  Similarity=0.063  Sum_probs=87.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC-CCC--------CCcEEEEEccCCCCCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN-PHI--------SELIEIRKVDNSESTPSIQES  186 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N-~~L--------~~rI~~v~~d~~~~~p~~~~~  186 (496)
                      +.+|||||||+|.++..++.. +..+++++|+|+.+++.|++|+ .. +++        ..+++++.+|..+        
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~--------  145 (281)
T 1mjf_A           76 PKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFE--------  145 (281)
T ss_dssp             CCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHH--------
T ss_pred             CCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHH--------
Confidence            468999999999998888776 6679999999999999999998 32 112        3578888776320        


Q ss_pred             ccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCccc
Q 010968          187 LTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSC  266 (496)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al  266 (496)
                                                                  ++.   . .++||+|++|+|+...       |    
T Consensus       146 --------------------------------------------~l~---~-~~~fD~Ii~d~~~~~~-------~----  166 (281)
T 1mjf_A          146 --------------------------------------------FIK---N-NRGFDVIIADSTDPVG-------P----  166 (281)
T ss_dssp             --------------------------------------------HHH---H-CCCEEEEEEECCCCC-------------
T ss_pred             --------------------------------------------Hhc---c-cCCeeEEEECCCCCCC-------c----
Confidence                                                        111   1 3579999999985210       1    


Q ss_pred             CCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCc----CcHHHHHHHHHHcCCeeEEEE
Q 010968          267 GGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRK----SNLKFLISKLRKVGVTIVKTT  328 (496)
Q Consensus       267 ~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~----s~l~~L~~~L~~~g~~~vk~~  328 (496)
                         ..       .+ +...+++.....++++|++....+..    ..+..+.+.+++. +..+...
T Consensus       167 ---~~-------~l-~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-f~~v~~~  220 (281)
T 1mjf_A          167 ---AK-------VL-FSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKV-FDRVYYY  220 (281)
T ss_dssp             -------------T-TSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHH-CSEEEEE
T ss_pred             ---ch-------hh-hHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH-CCceEEE
Confidence               00       11 12345556667889999988776532    2345566666665 4445543

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.90  E-value=1.3e-08  Score=106.93  Aligned_cols=148  Identities=13%  Similarity=0.047  Sum_probs=98.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|||+|||+|.....|+...++ .+++|+|+++.+++.+++|+++++ +. +|+++.+|...                
T Consensus       260 g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g-~~-~v~~~~~D~~~----------------  321 (450)
T 2yxl_A          260 GETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMG-IK-IVKPLVKDARK----------------  321 (450)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTT-CC-SEEEECSCTTC----------------
T ss_pred             cCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-CC-cEEEEEcChhh----------------
Confidence            358999999999999999888776 899999999999999999999985 64 58887776421                


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                          +...+  .++.||+|++|||+.....- ...|.........++.
T Consensus       322 ------------------------------------~~~~~--~~~~fD~Vl~D~Pcsg~g~~-~~~pd~~~~~~~~~~~  362 (450)
T 2yxl_A          322 ------------------------------------APEII--GEEVADKVLLDAPCTSSGTI-GKNPELRWRLREDKIN  362 (450)
T ss_dssp             ------------------------------------CSSSS--CSSCEEEEEEECCCCCGGGT-TTSTTHHHHCCTTSHH
T ss_pred             ------------------------------------cchhh--ccCCCCEEEEcCCCCCCeee-ccChhhhhhCCHHHHH
Confidence                                                00000  13579999999999654321 1233332111111000


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEEEE---EeCCcCcHHHHHHHHHHc-CCe
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWYTS---MVGRKSNLKFLISKLRKV-GVT  323 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwfts---mvGk~s~l~~L~~~L~~~-g~~  323 (496)
                         +-...-..+++.+..+++++|++.+   .+....+-..+...|+++ ++.
T Consensus       363 ---~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~~~~~  412 (450)
T 2yxl_A          363 ---EMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPEFK  412 (450)
T ss_dssp             ---HHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCSSCE
T ss_pred             ---HHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCE
Confidence               0012236788888889999887643   344455666777778876 454

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.90  E-value=6.9e-09  Score=96.32  Aligned_cols=59  Identities=17%  Similarity=0.146  Sum_probs=52.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ..+|||||||+|..+..++...+ +.+++++|+|+.+++.|++|++.++ +.++|+++.+|
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d  116 (210)
T 3c3p_A           57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNG-LIDRVELQVGD  116 (210)
T ss_dssp             CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHS-GGGGEEEEESC
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC-CCceEEEEEec
Confidence            35899999999999988888777 7899999999999999999999885 77789998886

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.90  E-value=2e-08  Score=98.23  Aligned_cols=62  Identities=16%  Similarity=0.204  Sum_probs=53.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ..+|||||||+|.....|+..+ +..+++|+|+|+.+++.|+++++.+++...+|+++.+|..
T Consensus        37 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~   99 (299)
T 3g5t_A           37 RKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSD   99 (299)
T ss_dssp             CSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTT
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHH
Confidence            4689999999999998888776 7899999999999999999999886224568999988753

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.90  E-value=6.7e-09  Score=108.29  Aligned_cols=60  Identities=22%  Similarity=0.083  Sum_probs=52.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCCc-EEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISEL-IEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~-~~v~avDIs~~AL~~A~~N~~~N~~L~~r-I~~v~~d~  176 (496)
                      ..+|||++||+|.+++.++.+..+ .+|+++|+|+.|++.|++|++.|+ ++++ ++++.+|.
T Consensus        53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ng-l~~~~v~v~~~Da  114 (392)
T 3axs_A           53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNN-IPEDRYEIHGMEA  114 (392)
T ss_dssp             CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTT-CCGGGEEEECSCH
T ss_pred             CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhC-CCCceEEEEeCCH
Confidence            358999999999999988887666 589999999999999999999995 8877 99987763

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.89  E-value=1.7e-08  Score=94.08  Aligned_cols=155  Identities=12%  Similarity=0.038  Sum_probs=100.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||||||+|.+...++.+  +.+|+|+|+++.+           + + .+++++.+|..+...              
T Consensus        26 g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~-----------~-~-~~v~~~~~D~~~~~~--------------   76 (191)
T 3dou_A           26 GDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME-----------E-I-AGVRFIRCDIFKETI--------------   76 (191)
T ss_dssp             TCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC-----------C-C-TTCEEEECCTTSSSH--------------
T ss_pred             CCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc-----------c-C-CCeEEEEccccCHHH--------------
Confidence            468999999999998877665  7899999999741           1 2 358888888542000              


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccC--CCCcEEEEEECCCCccCcccccCCCCcccCCCCCcc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVR--DGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~--~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Em  273 (496)
                                              .         ..+.....  ..++||+|+||+|...+....           .+  
T Consensus        77 ------------------------~---------~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~-----------~d--  110 (191)
T 3dou_A           77 ------------------------F---------DDIDRALREEGIEKVDDVVSDAMAKVSGIPS-----------RD--  110 (191)
T ss_dssp             ------------------------H---------HHHHHHHHHHTCSSEEEEEECCCCCCCSCHH-----------HH--
T ss_pred             ------------------------H---------HHHHHHhhcccCCcceEEecCCCcCCCCCcc-----------cC--
Confidence                                    0         00000010  013899999999653221100           00  


Q ss_pred             cccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecCCC---eeEEEEEEeeCCcc
Q 010968          274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQ---TCRWGLAWSFVPPA  348 (496)
Q Consensus       274 v~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~---t~Rw~lAWsF~~~~  348 (496)
                        .......+..+++.+..+++++|+|.+.+-.......+...|+. .|..|++.+...++   ...+++|-.|..+.
T Consensus       111 --~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~-~F~~v~~~kP~asR~~s~E~y~v~~~~~~~~  185 (191)
T 3dou_A          111 --HAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRK-NFSSYKISKPPASRGSSSEIYIMFFGFKAEG  185 (191)
T ss_dssp             --HHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGG-GEEEEEEECC------CCEEEEEEEEECCC-
T ss_pred             --HHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHH-hcCEEEEECCCCccCCCceEEEEEeeecccc
Confidence              00124556788888999999999998877766667788888865 58889999988877   37788888887653

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.89  E-value=4.3e-09  Score=104.50  Aligned_cols=69  Identities=12%  Similarity=0.056  Sum_probs=53.8

Q ss_pred             HhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 010968           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI  171 (496)
Q Consensus        92 ~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~  171 (496)
                      .+.+..|.+.+..         ... +|||||||+|.+...|+..  +.+|+|+|+|+++++.|++++..     .++++
T Consensus        33 ~~i~~~Iv~~~~~---------~~~-~VLEIG~G~G~lt~~L~~~--~~~V~avEid~~~~~~l~~~~~~-----~~v~v   95 (271)
T 3fut_A           33 EAHLRRIVEAARP---------FTG-PVFEVGPGLGALTRALLEA--GAEVTAIEKDLRLRPVLEETLSG-----LPVRL   95 (271)
T ss_dssp             HHHHHHHHHHHCC---------CCS-CEEEECCTTSHHHHHHHHT--TCCEEEEESCGGGHHHHHHHTTT-----SSEEE
T ss_pred             HHHHHHHHHhcCC---------CCC-eEEEEeCchHHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcCC-----CCEEE
Confidence            3455666666642         134 8999999999998888765  47899999999999999998752     36999


Q ss_pred             EEccCC
Q 010968          172 RKVDNS  177 (496)
Q Consensus       172 v~~d~~  177 (496)
                      +.+|..
T Consensus        96 i~~D~l  101 (271)
T 3fut_A           96 VFQDAL  101 (271)
T ss_dssp             EESCGG
T ss_pred             EECChh
Confidence            998843

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.89  E-value=4e-08  Score=90.60  Aligned_cols=83  Identities=17%  Similarity=0.157  Sum_probs=61.1

Q ss_pred             EEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHH
Q 010968           77 WWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAE  156 (496)
Q Consensus        77 ~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~  156 (496)
                      +.+..+..+..    ...+.++.+.+..         ....+|||||||+|.+...++..  +.+++|+|+++.+++.|+
T Consensus        52 ~~~~~~~~~~~----~~~~~~~~~~l~~---------~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~  116 (210)
T 3lbf_A           52 LPIGQGQTISQ----PYMVARMTELLEL---------TPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQAR  116 (210)
T ss_dssp             EECTTSCEECC----HHHHHHHHHHTTC---------CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHH
T ss_pred             cccCCCCEeCC----HHHHHHHHHhcCC---------CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHH
Confidence            34444554443    3444555555532         13468999999999998888765  689999999999999999


Q ss_pred             HHHHHCCCCCCcEEEEEccC
Q 010968          157 KNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       157 ~N~~~N~~L~~rI~~v~~d~  176 (496)
                      +|++.++ +. +++++.+|.
T Consensus       117 ~~~~~~~-~~-~v~~~~~d~  134 (210)
T 3lbf_A          117 RRLKNLD-LH-NVSTRHGDG  134 (210)
T ss_dssp             HHHHHTT-CC-SEEEEESCG
T ss_pred             HHHHHcC-CC-ceEEEECCc
Confidence            9999885 55 688888763

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.88  E-value=2.7e-10  Score=111.89  Aligned_cols=58  Identities=12%  Similarity=0.067  Sum_probs=50.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcH-------HHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD-------VALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~-------~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||+|||+|.+++.|+..  +.+|+|+|+|+       ++++.|++|++.|+ +.++|+++.+|.
T Consensus        84 ~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~-~~~ri~~~~~d~  148 (258)
T 2r6z_A           84 HPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQD-TAARINLHFGNA  148 (258)
T ss_dssp             CCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHH-HHTTEEEEESCH
T ss_pred             cCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhC-CccCeEEEECCH
Confidence            358999999999998888764  67999999999       99999999999885 777899998873

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.88  E-value=4.5e-09  Score=105.60  Aligned_cols=71  Identities=15%  Similarity=0.081  Sum_probs=55.3

Q ss_pred             HhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 010968           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI  171 (496)
Q Consensus        92 ~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~  171 (496)
                      .+.+..|.+.+..         ....+|||||||+|.+...|+..  ..+|+|+|+|+++++.|++++...    .++++
T Consensus        36 ~~i~~~Iv~~l~~---------~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~----~~v~v  100 (295)
T 3gru_A           36 KNFVNKAVESANL---------TKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELY----NNIEI  100 (295)
T ss_dssp             HHHHHHHHHHTTC---------CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHC----SSEEE
T ss_pred             HHHHHHHHHhcCC---------CCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccC----CCeEE
Confidence            3456666665542         12458999999999998888765  679999999999999999998743    36999


Q ss_pred             EEccCC
Q 010968          172 RKVDNS  177 (496)
Q Consensus       172 v~~d~~  177 (496)
                      +.+|..
T Consensus       101 i~gD~l  106 (295)
T 3gru_A          101 IWGDAL  106 (295)
T ss_dssp             EESCTT
T ss_pred             EECchh
Confidence            988853

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.88  E-value=2.2e-08  Score=94.67  Aligned_cols=73  Identities=21%  Similarity=0.330  Sum_probs=55.9

Q ss_pred             hHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEE
Q 010968           93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIR  172 (496)
Q Consensus        93 nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v  172 (496)
                      ..+.|+.+++.....      ....+|||||||+|.++..|+..  +.+++|+|+|+.+++.|++|+..++ +  +++++
T Consensus        25 ~~~~~~~~~~~~~~~------~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~-~--~v~~~   93 (252)
T 1wzn_A           25 AEIDFVEEIFKEDAK------REVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERN-L--KIEFL   93 (252)
T ss_dssp             HHHHHHHHHHHHTCS------SCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT-C--CCEEE
T ss_pred             HHHHHHHHHHHHhcc------cCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcC-C--ceEEE
Confidence            345666776654211      13468999999999998887764  6799999999999999999998874 4  58888


Q ss_pred             EccC
Q 010968          173 KVDN  176 (496)
Q Consensus       173 ~~d~  176 (496)
                      .+|.
T Consensus        94 ~~d~   97 (252)
T 1wzn_A           94 QGDV   97 (252)
T ss_dssp             ESCG
T ss_pred             ECCh
Confidence            7763

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.87  E-value=4.7e-09  Score=117.96  Aligned_cols=47  Identities=13%  Similarity=0.064  Sum_probs=40.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc---CCeeEEecCcHHHHHHH--HHHHHHC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL---GWSFVGSDMTDVALEWA--EKNVKSN  162 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~---~~~v~avDIs~~AL~~A--~~N~~~N  162 (496)
                      ..+|+|.|||||++.+.++...+   ..+++|+||++.++++|  +.|+..|
T Consensus       322 g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN  373 (878)
T 3s1s_A          322 DEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFP  373 (878)
T ss_dssp             TCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTST
T ss_pred             CCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHh
Confidence            46899999999999888877664   35899999999999999  8888765

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.86  E-value=3.2e-08  Score=89.55  Aligned_cols=57  Identities=21%  Similarity=0.243  Sum_probs=48.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      +.+|||||||+|.++..++..  +.+++|+|+|+.+++.|++++..++ +. +++++..|.
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~-~~~~~~~d~   89 (199)
T 2xvm_A           33 PGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIEN-LD-NLHTRVVDL   89 (199)
T ss_dssp             SCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHT-CT-TEEEEECCG
T ss_pred             CCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCC-CC-CcEEEEcch
Confidence            358999999999998887765  7899999999999999999998774 53 488887763

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.86  E-value=1.3e-08  Score=102.02  Aligned_cols=59  Identities=15%  Similarity=0.069  Sum_probs=49.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHH--CCCC-CCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS--NPHI-SELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~--N~~L-~~rI~~v~~d  175 (496)
                      +.+|||||||+|.++..++...+..+++++|+|+++++.|++|+..  ++ + ..+++++.+|
T Consensus        96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~-~~~~rv~v~~~D  157 (304)
T 2o07_A           96 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIG-YSSSKLTLHVGD  157 (304)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG-GGCTTEEEEESC
T ss_pred             CCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcc-cCCCcEEEEECc
Confidence            4689999999999988887665668999999999999999999865  32 3 4679998876

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.86  E-value=8.2e-09  Score=99.85  Aligned_cols=60  Identities=12%  Similarity=0.118  Sum_probs=54.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|..++.++..++ +.+++++|+++++++.|++|++.++ +.++|+++.+|.
T Consensus        80 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g-~~~~i~~~~gda  140 (247)
T 1sui_A           80 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG-VDHKIDFREGPA  140 (247)
T ss_dssp             CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT-CGGGEEEEESCH
T ss_pred             cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCeEEEECCH
Confidence            45899999999999999988877 7899999999999999999999985 878999998863

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.86  E-value=3.7e-08  Score=98.85  Aligned_cols=59  Identities=15%  Similarity=0.138  Sum_probs=53.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...++...++++++++|+ +.+++.|++|+..++ +.++|+++.+|.
T Consensus       184 ~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~  242 (360)
T 1tw3_A          184 VRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG-LSDRVDVVEGDF  242 (360)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT-CTTTEEEEECCT
T ss_pred             CcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcC-CCCceEEEeCCC
Confidence            46899999999999999998888999999999 999999999999885 777899998874

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=98.85  E-value=2.2e-09  Score=103.55  Aligned_cols=60  Identities=13%  Similarity=0.065  Sum_probs=54.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|..++.|+...+ +.+|+++|+++++++.|++|++.++ +.++|+++.+|.
T Consensus        61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g-~~~~i~~~~gda  121 (242)
T 3r3h_A           61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAK-QEHKIKLRLGPA  121 (242)
T ss_dssp             CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTT-CTTTEEEEESCH
T ss_pred             cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCH
Confidence            45899999999999999988775 7899999999999999999999985 888999998873

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.85  E-value=5.6e-08  Score=90.40  Aligned_cols=52  Identities=12%  Similarity=0.021  Sum_probs=42.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      +.+|||||||+|.+...++..  +.+++|+|+|+.+++.|+++...      +++++.+|
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~------~v~~~~~d   94 (250)
T 2p7i_A           43 PGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLKD------GITYIHSR   94 (250)
T ss_dssp             SSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSCS------CEEEEESC
T ss_pred             CCcEEEECCCCCHHHHHHHHh--CCcEEEEeCCHHHHHHHHHhhhC------CeEEEEcc
Confidence            357999999999988777654  35899999999999999988642      48888776

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.85  E-value=1.5e-08  Score=109.39  Aligned_cols=59  Identities=15%  Similarity=0.023  Sum_probs=45.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc------------------CCeeEEecCcHHHHHHHHHHHHHCCCCCC----cEEEEE
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL------------------GWSFVGSDMTDVALEWAEKNVKSNPHISE----LIEIRK  173 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~------------------~~~v~avDIs~~AL~~A~~N~~~N~~L~~----rI~~v~  173 (496)
                      ..+|+|.|||||.+.+.++..+.                  ..+++|+|+++.++++|+.|+..++ +..    ++.++.
T Consensus       170 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~g-i~~~~~~~~~I~~  248 (541)
T 2ar0_A          170 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD-IEGNLDHGGAIRL  248 (541)
T ss_dssp             TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT-CCCBGGGTBSEEE
T ss_pred             CCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhC-CCccccccCCeEe
Confidence            45899999999998777665432                  2479999999999999999998874 543    255666


Q ss_pred             cc
Q 010968          174 VD  175 (496)
Q Consensus       174 ~d  175 (496)
                      +|
T Consensus       249 gD  250 (541)
T 2ar0_A          249 GN  250 (541)
T ss_dssp             SC
T ss_pred             CC
Confidence            65

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.85  E-value=1.8e-08  Score=105.06  Aligned_cols=145  Identities=12%  Similarity=0.012  Sum_probs=99.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||+|||+|.....++...++.+++|+|+++.+++.+++|+++++ +  .++++..|...                 
T Consensus       247 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g-~--~~~~~~~D~~~-----------------  306 (429)
T 1sqg_A          247 GEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG-M--KATVKQGDGRY-----------------  306 (429)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT-C--CCEEEECCTTC-----------------
T ss_pred             cCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcC-C--CeEEEeCchhh-----------------
Confidence            458999999999999999888777899999999999999999999985 5  36777776431                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         +....  ..++||.|++||||.....- .+.|......+..++  
T Consensus       307 -----------------------------------~~~~~--~~~~fD~Vl~D~Pcsg~g~~-~~~p~~~~~~~~~~~--  346 (429)
T 1sqg_A          307 -----------------------------------PSQWC--GEQQFDRILLDAPCSATGVI-RRHPDIKWLRRDRDI--  346 (429)
T ss_dssp             -----------------------------------THHHH--TTCCEEEEEEECCCCCGGGT-TTCTTHHHHCCTTHH--
T ss_pred             -----------------------------------chhhc--ccCCCCEEEEeCCCCccccc-CCCcchhhcCCHHHH--
Confidence                                               00001  23579999999999754322 223433221112100  


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEE---EeCCcCcHHHHHHHHHHcC
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTS---MVGRKSNLKFLISKLRKVG  321 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwfts---mvGk~s~l~~L~~~L~~~g  321 (496)
                       .+-..+...+++.+..+++++|++.+   -+....+...+...|.+.+
T Consensus       347 -~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~~~  394 (429)
T 1sqg_A          347 -PELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTA  394 (429)
T ss_dssp             -HHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCT
T ss_pred             -HHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHhCC
Confidence             00123557888998899999887643   2344566677777787763

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.84  E-value=1.5e-08  Score=97.02  Aligned_cols=60  Identities=15%  Similarity=0.120  Sum_probs=54.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|..+..++..++ +.+++++|+++++++.|++|++..+ +.++|+++.+|.
T Consensus        71 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g-~~~~i~~~~gda  131 (237)
T 3c3y_A           71 AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAG-VEHKINFIESDA  131 (237)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEESCH
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCH
Confidence            45899999999999999988877 7899999999999999999999985 878899998873

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.83  E-value=4.2e-08  Score=90.71  Aligned_cols=53  Identities=15%  Similarity=0.124  Sum_probs=43.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...|+..  +.+++|+|+++.+++.|++++.      .+++++.+|.
T Consensus        46 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~d~   98 (220)
T 3hnr_A           46 FGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP------KEFSITEGDF   98 (220)
T ss_dssp             CSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC------TTCCEESCCS
T ss_pred             CCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC------CceEEEeCCh
Confidence            468999999999998877765  7899999999999999998865      2466766653

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.83  E-value=6.1e-08  Score=97.70  Aligned_cols=61  Identities=15%  Similarity=0.106  Sum_probs=54.6

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ...+|||||||+|.+...++.+.|+.+++++|+ +.+++.|+++++.++ +.++|+++.+|..
T Consensus       190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~~  250 (359)
T 1x19_A          190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG-VADRMRGIAVDIY  250 (359)
T ss_dssp             TCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT-CTTTEEEEECCTT
T ss_pred             CCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcC-CCCCEEEEeCccc
Confidence            346899999999999999998889999999999 999999999999885 7788999988743

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.83  E-value=1.8e-08  Score=95.72  Aligned_cols=60  Identities=17%  Similarity=0.091  Sum_probs=53.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.....++...+ +.+++++|+++.+++.|++|++.++ +.++|+++.+|.
T Consensus        61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g-~~~~v~~~~~d~  121 (239)
T 2hnk_A           61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENG-LENKIFLKLGSA  121 (239)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEESCH
T ss_pred             cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCEEEEECCH
Confidence            45899999999999988888776 6899999999999999999999885 777899988863

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.83  E-value=3e-08  Score=100.84  Aligned_cols=136  Identities=14%  Similarity=0.053  Sum_probs=92.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      +.+|||||||+|.+...|++.+|+.+++++|||+.+++.|+++...+  -..+++++.+|...                 
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~--~~~rv~v~~~Da~~-----------------  150 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIP--RAPRVKIRVDDARM-----------------  150 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCC--CTTTEEEEESCHHH-----------------
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcccc--CCCceEEEECcHHH-----------------
Confidence            35899999999999998888788999999999999999999998654  24689999887321                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         ++...  ..++||+|+++.+....      .|        ..+. 
T Consensus       151 -----------------------------------~l~~~--~~~~fDvIi~D~~~~~~------~~--------~~L~-  178 (317)
T 3gjy_A          151 -----------------------------------VAESF--TPASRDVIIRDVFAGAI------TP--------QNFT-  178 (317)
T ss_dssp             -----------------------------------HHHTC--CTTCEEEEEECCSTTSC------CC--------GGGS-
T ss_pred             -----------------------------------HHhhc--cCCCCCEEEECCCCccc------cc--------hhhh-
Confidence                                               11111  24689999999632210      01        1010 


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCc---HHHHHHHHHHcCCeeEEEEEe
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSN---LKFLISKLRKVGVTIVKTTEF  330 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~---l~~L~~~L~~~g~~~vk~~ed  330 (496)
                         ..+|    +++....++++|++.+-.+....   +..+.+.|++. |..+.+..+
T Consensus       179 ---t~ef----l~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~v-F~~v~~~~~  228 (317)
T 3gjy_A          179 ---TVEF----FEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEV-FEHVAVIAD  228 (317)
T ss_dssp             ---BHHH----HHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHH-CSEEEEEEC
T ss_pred             ---HHHH----HHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHH-CCceEEEEe
Confidence               1334    44556688999999877764333   34566667665 555666553

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.82  E-value=1.4e-09  Score=114.17  Aligned_cols=57  Identities=16%  Similarity=-0.016  Sum_probs=49.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC--CCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN--PHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N--~~L~~rI~~v~~d~  176 (496)
                      ..+|||+|||+|.+++.|+..  +.+|+|+|+|+.+++.|++|++.+  + + ++|+++.+|.
T Consensus        94 g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~g-l-~~i~~i~~Da  152 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNE-G-KDVNILTGDF  152 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCT-T-CEEEEEESCG
T ss_pred             CCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccC-C-CcEEEEECcH
Confidence            358999999999998777654  579999999999999999999987  5 5 6799998874

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.82  E-value=2.1e-07  Score=85.29  Aligned_cols=53  Identities=13%  Similarity=0.140  Sum_probs=44.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...|+..  +.+++|+|+++.+++.|++    ++ + .+++++.+|.
T Consensus        47 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~----~~-~-~~~~~~~~d~   99 (218)
T 3ou2_A           47 RGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGR----HG-L-DNVEFRQQDL   99 (218)
T ss_dssp             CSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGG----GC-C-TTEEEEECCT
T ss_pred             CCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHh----cC-C-CCeEEEeccc
Confidence            358999999999998888765  7799999999999999988    22 3 4688888864

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.82  E-value=4e-08  Score=89.90  Aligned_cols=54  Identities=17%  Similarity=0.179  Sum_probs=45.9

Q ss_pred             eEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       118 ~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      +|||||||+|.+...++..  +.+++|+|+|+.+++.|++++..++ +  ++.++..|.
T Consensus        32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~--~~~~~~~d~   85 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKG-V--KITTVQSNL   85 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHT-C--CEEEECCBT
T ss_pred             CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcC-C--ceEEEEcCh
Confidence            8999999999988777654  6799999999999999999998764 3  588876663

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.82  E-value=1.7e-08  Score=109.19  Aligned_cols=147  Identities=14%  Similarity=0.111  Sum_probs=93.2

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHh---cCCeeEEecCcHHHHHHHHHHHHHCCCCC-CcEEEEEccCCCCCCcccccccCC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASL---LGWSFVGSDMTDVALEWAEKNVKSNPHIS-ELIEIRKVDNSESTPSIQESLTGK  190 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~---~~~~v~avDIs~~AL~~A~~N~~~N~~L~-~rI~~v~~d~~~~~p~~~~~~~~~  190 (496)
                      ...+|+|.|||||.+.+.++..+   ...+++|+|+++.++++|+.|+..++ +. ..+.++.+|....           
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g-i~~~~~~I~~gDtL~~-----------  288 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHG-VPIENQFLHNADTLDE-----------  288 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTT-CCGGGEEEEESCTTTS-----------
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcC-CCcCccceEecceecc-----------
Confidence            35689999999999877776654   25789999999999999999999885 64 4678888874320           


Q ss_pred             ccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccc---cCCCCcccC
Q 010968          191 SVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEA---GLNPKTSCG  267 (496)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea---~~eP~~al~  267 (496)
                                                             ++ ..  ....+||+||+||||.......   ...|+....
T Consensus       289 ---------------------------------------d~-p~--~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~  326 (542)
T 3lkd_A          289 ---------------------------------------DW-PT--QEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPF  326 (542)
T ss_dssp             ---------------------------------------CS-CC--SSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGG
T ss_pred             ---------------------------------------cc-cc--cccccccEEEecCCcCCccccchhhhhhhhhhhh
Confidence                                                   00 00  0236899999999998532111   112221111


Q ss_pred             C-CCCcccccCchHHHHHHHHHHHHHhhc-CCeEEEEEeCCc-----CcHHHHHHHHHHcCC
Q 010968          268 G-TPEEMVCSGGERAFITRIIEDSVALKQ-TFRWYTSMVGRK-----SNLKFLISKLRKVGV  322 (496)
Q Consensus       268 G-~~~Emv~~GGel~FI~riI~eS~~ll~-~~gwftsmvGk~-----s~l~~L~~~L~~~g~  322 (496)
                      | ...   ...+.+.|+..++.    +++ ++|...+.+...     .....+.+.|-+.+.
T Consensus       327 G~~~~---~s~~~~~Fl~~~l~----~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~Lle~~~  381 (542)
T 3lkd_A          327 GKLAP---KSKADFAFLLHGYY----HLKQDNGVMAIVLPHGVLFRGNAEGTIRKALLEEGA  381 (542)
T ss_dssp             SSCCC---TTCCHHHHHHHHHH----TBCTTTCEEEEEEETHHHHCCTHHHHHHHHHHHTTC
T ss_pred             hhcCC---CchhhHHHHHHHHH----HhCCCceeEEEEecchHhhCCchhHHHHHHHHhCCc
Confidence            1 000   11235677776664    667 777765555321     123567777777654

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.81  E-value=2e-08  Score=94.93  Aligned_cols=57  Identities=7%  Similarity=-0.148  Sum_probs=46.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...|+. ....+++|+|+|+.+++.|+++++.++   .+++++.+|.
T Consensus        61 ~~~vLDiGcGtG~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~  117 (236)
T 1zx0_A           61 GGRVLEVGFGMAIAASKVQE-APIDEHWIIECNDGVFQRLRDWAPRQT---HKVIPLKGLW  117 (236)
T ss_dssp             CEEEEEECCTTSHHHHHHHT-SCEEEEEEEECCHHHHHHHHHHGGGCS---SEEEEEESCH
T ss_pred             CCeEEEEeccCCHHHHHHHh-cCCCeEEEEcCCHHHHHHHHHHHHhcC---CCeEEEecCH
Confidence            46899999999999877754 333489999999999999999998763   4688887763

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.81  E-value=4e-08  Score=89.77  Aligned_cols=133  Identities=10%  Similarity=0.085  Sum_probs=86.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||||||+|.+...++...+. +++|+|+|+.+++.|++++...    .+++++..|...                 
T Consensus        43 ~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~----~~i~~~~~d~~~-----------------  100 (215)
T 2pxx_A           43 EDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHV----PQLRWETMDVRK-----------------  100 (215)
T ss_dssp             TCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTC----TTCEEEECCTTS-----------------
T ss_pred             CCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccC----CCcEEEEcchhc-----------------
Confidence            458999999999998877765333 8999999999999999998642    368888776431                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         +  .+  ..++||+|+||+|+..-.... ..|...   ..     
T Consensus       101 -----------------------------------~--~~--~~~~fD~v~~~~~~~~~~~~~-~~~~~~---~~-----  132 (215)
T 2pxx_A          101 -----------------------------------L--DF--PSASFDVVLEKGTLDALLAGE-RDPWTV---SS-----  132 (215)
T ss_dssp             -----------------------------------C--CS--CSSCEEEEEEESHHHHHTTTC-SCTTSC---CH-----
T ss_pred             -----------------------------------C--CC--CCCcccEEEECcchhhhcccc-cccccc---cc-----
Confidence                                               0  00  235799999999984321100 011110   01     


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCC
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGV  322 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~  322 (496)
                        ....-..+++++...+++++|++.+..-  ..-......+...++
T Consensus       133 --~~~~~~~~~l~~~~~~LkpgG~li~~~~--~~~~~~~~~~~~~~~  175 (215)
T 2pxx_A          133 --EGVHTVDQVLSEVSRVLVPGGRFISMTS--AAPHFRTRHYAQAYY  175 (215)
T ss_dssp             --HHHHHHHHHHHHHHHHEEEEEEEEEEES--CCHHHHHHHHCCGGG
T ss_pred             --chhHHHHHHHHHHHHhCcCCCEEEEEeC--CCcHHHHHHHhcccc
Confidence              1244567888888889999998765543  333334445545544

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.81  E-value=1.4e-08  Score=96.72  Aligned_cols=59  Identities=17%  Similarity=0.098  Sum_probs=52.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ..+|||||||+|..+..++..++ +.+++++|+++++++.|++|++.++ +.++|+++.+|
T Consensus        73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g-~~~~i~~~~~d  132 (232)
T 3cbg_A           73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAG-VAEKISLRLGP  132 (232)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT-CGGGEEEEESC
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcC
Confidence            35899999999999888888776 6899999999999999999999885 77789998876

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.80  E-value=1.1e-07  Score=88.07  Aligned_cols=84  Identities=18%  Similarity=0.109  Sum_probs=61.3

Q ss_pred             EEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHH
Q 010968           77 WWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWA  155 (496)
Q Consensus        77 ~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A  155 (496)
                      +.+..+..+..    ...+.++.+.+..         ....+|||||||+|.+...++... +..+++++|+++.+++.|
T Consensus        52 ~~~~~~~~~~~----~~~~~~~~~~~~~---------~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a  118 (215)
T 2yxe_A           52 LEIGYGQTISA----IHMVGMMCELLDL---------KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKA  118 (215)
T ss_dssp             EEEETTEEECC----HHHHHHHHHHTTC---------CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHH
T ss_pred             ccCCCCcEeCc----HHHHHHHHHhhCC---------CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHH
Confidence            34444444433    4455556655532         124589999999999988888776 458999999999999999


Q ss_pred             HHHHHHCCCCCCcEEEEEcc
Q 010968          156 EKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       156 ~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ++++..++ +. +++++..|
T Consensus       119 ~~~~~~~~-~~-~v~~~~~d  136 (215)
T 2yxe_A          119 ERTLRKLG-YD-NVIVIVGD  136 (215)
T ss_dssp             HHHHHHHT-CT-TEEEEESC
T ss_pred             HHHHHHcC-CC-CeEEEECC
Confidence            99998774 54 48887765

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.79  E-value=7.3e-08  Score=91.12  Aligned_cols=54  Identities=26%  Similarity=0.236  Sum_probs=46.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...++...|+.+++|+|+|+.+++.|+++   .    .+++++..|.
T Consensus        34 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~---~----~~~~~~~~d~   87 (259)
T 2p35_A           34 VLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR---L----PNTNFGKADL   87 (259)
T ss_dssp             CSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH---S----TTSEEEECCT
T ss_pred             CCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---C----CCcEEEECCh
Confidence            4589999999999999998888889999999999999999988   2    2477777763

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.79  E-value=7.1e-08  Score=93.27  Aligned_cols=52  Identities=19%  Similarity=0.251  Sum_probs=42.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...|+.  ++.+++|+|+|+.+++.|+++.       .++.++.+|.
T Consensus        58 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~d~  109 (279)
T 3ccf_A           58 GEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY-------PHLHFDVADA  109 (279)
T ss_dssp             TCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC-------TTSCEEECCT
T ss_pred             CCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC-------CCCEEEECCh
Confidence            45899999999999877775  7889999999999999998875       1356666653

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.79  E-value=3.1e-08  Score=99.39  Aligned_cols=137  Identities=14%  Similarity=0.051  Sum_probs=91.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHH-CCC-C-CCcEEEEEccCCCCCCcccccccCCcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS-NPH-I-SELIEIRKVDNSESTPSIQESLTGKSV  192 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~-N~~-L-~~rI~~v~~d~~~~~p~~~~~~~~~~~  192 (496)
                      +.+|||||||+|.++..++...+..+++++|+|+.+++.|++|+.. +.+ + ..+++++.+|...              
T Consensus        78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~--------------  143 (314)
T 1uir_A           78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARA--------------  143 (314)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHH--------------
T ss_pred             CCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHH--------------
Confidence            4689999999999988887665678999999999999999999864 211 2 3579998886321              


Q ss_pred             ccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCc
Q 010968          193 QDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEE  272 (496)
Q Consensus       193 ~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~E  272 (496)
                                                            .+.   ...++||+|++|+|....  .  ..|       .  
T Consensus       144 --------------------------------------~l~---~~~~~fD~Ii~d~~~~~~--~--~~~-------~--  169 (314)
T 1uir_A          144 --------------------------------------YLE---RTEERYDVVIIDLTDPVG--E--DNP-------A--  169 (314)
T ss_dssp             --------------------------------------HHH---HCCCCEEEEEEECCCCBS--T--TCG-------G--
T ss_pred             --------------------------------------HHH---hcCCCccEEEECCCCccc--c--cCc-------c--
Confidence                                                  111   124679999999875220  0  001       1  


Q ss_pred             ccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCc-----CcHHHHHHHHHHcCCeeEEE
Q 010968          273 MVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRK-----SNLKFLISKLRKVGVTIVKT  327 (496)
Q Consensus       273 mv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~-----s~l~~L~~~L~~~g~~~vk~  327 (496)
                            +..+...++++....++++|++.+..+..     .....+.+.+++. +..+..
T Consensus       170 ------~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~  222 (314)
T 1uir_A          170 ------RLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREA-FRYVRS  222 (314)
T ss_dssp             ------GGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTT-CSEEEE
T ss_pred             ------hhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHH-CCceEE
Confidence                  11123455666677899999987765432     3356677777776 444443

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.78  E-value=3.2e-08  Score=100.33  Aligned_cols=58  Identities=17%  Similarity=0.145  Sum_probs=49.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.++..++. .+..+|+|+|+++ +++.|+++++.++ +.++|+++.+|.
T Consensus        51 ~~~VLDiGcGtG~ls~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~-l~~~v~~~~~d~  108 (348)
T 2y1w_A           51 DKIVLDVGCGSGILSFFAAQ-AGARKIYAVEAST-MAQHAEVLVKSNN-LTDRIVVIPGKV  108 (348)
T ss_dssp             TCEEEEETCTTSHHHHHHHH-TTCSEEEEEECST-HHHHHHHHHHHTT-CTTTEEEEESCT
T ss_pred             cCEEEEcCCCccHHHHHHHh-CCCCEEEEECCHH-HHHHHHHHHHHcC-CCCcEEEEEcch
Confidence            45899999999999877665 3556999999996 8899999999995 888999998874

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.77  E-value=5.8e-08  Score=88.89  Aligned_cols=73  Identities=19%  Similarity=0.173  Sum_probs=52.3

Q ss_pred             cHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEE
Q 010968           91 RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIE  170 (496)
Q Consensus        91 R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~  170 (496)
                      +..|..|+..+...         ....+|||+|||+|.+...++. .++.+++|+|+|+.+++.|++++..++   .+++
T Consensus         8 ~~~~~~~~~~~~~~---------~~~~~vLDiGcG~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~   74 (209)
T 2p8j_A            8 QPQLYRFLKYCNES---------NLDKTVLDCGAGGDLPPLSIFV-EDGYKTYGIEISDLQLKKAENFSRENN---FKLN   74 (209)
T ss_dssp             CTHHHHHHHHHHHS---------SSCSEEEEESCCSSSCTHHHHH-HTTCEEEEEECCHHHHHHHHHHHHHHT---CCCC
T ss_pred             hhhHHHHHHHHhcc---------CCCCEEEEECCCCCHHHHHHHH-hCCCEEEEEECCHHHHHHHHHHHHhcC---CceE
Confidence            44566666544322         1246899999999986444433 367899999999999999999998763   3577


Q ss_pred             EEEccC
Q 010968          171 IRKVDN  176 (496)
Q Consensus       171 ~v~~d~  176 (496)
                      ++.+|.
T Consensus        75 ~~~~d~   80 (209)
T 2p8j_A           75 ISKGDI   80 (209)
T ss_dssp             EEECCT
T ss_pred             EEECch
Confidence            777764

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.77  E-value=4.5e-07  Score=85.57  Aligned_cols=56  Identities=11%  Similarity=-0.003  Sum_probs=44.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ..+|||||||+|.+...|+...++.+|+|+|+|+.+++.+.++++..+    ++.++.+|
T Consensus        58 g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~----~v~~~~~d  113 (210)
T 1nt2_A           58 DERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN----NIIPLLFD  113 (210)
T ss_dssp             SCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS----SEEEECSC
T ss_pred             CCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCC----CeEEEEcC
Confidence            358999999999998888877666799999999999887777776532    47776655

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.76  E-value=1.5e-08  Score=97.90  Aligned_cols=55  Identities=13%  Similarity=0.106  Sum_probs=46.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...|+...  .+++|+|+|+++++.|++|++..    ++++++.+|.
T Consensus        31 ~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~----~~v~~~~~D~   85 (244)
T 1qam_A           31 HDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDH----DNFQVLNKDI   85 (244)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTC----CSEEEECCCG
T ss_pred             CCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccC----CCeEEEEChH
Confidence            4589999999999988887653  79999999999999999998643    3688887764

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.76  E-value=1.1e-07  Score=95.02  Aligned_cols=60  Identities=10%  Similarity=0.009  Sum_probs=54.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ..+|||||||+|.+...++..+|+.+++++|+ +.+++.|++++...+ +.++|+++.+|..
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~~  239 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHD-LGGRVEFFEKNLL  239 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT-CGGGEEEEECCTT
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcC-CCCceEEEeCCcc
Confidence            56999999999999999998889999999999 889999999999885 8889999988753

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.76  E-value=1.2e-07  Score=96.33  Aligned_cols=60  Identities=17%  Similarity=0.113  Sum_probs=54.3

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ...+|||||||+|.+...++.++|+.+++++|+ +.+++.|++++...+ +.++|+++..|.
T Consensus       202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~-l~~~v~~~~~d~  261 (369)
T 3gwz_A          202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRG-LADRCEILPGDF  261 (369)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT-CTTTEEEEECCT
T ss_pred             cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcC-cCCceEEeccCC
Confidence            346999999999999999999889999999999 999999999999885 888999998874

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.76  E-value=5e-08  Score=92.13  Aligned_cols=41  Identities=22%  Similarity=0.375  Sum_probs=35.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHH
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN  158 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N  158 (496)
                      ..+|||||||+|.+...++..  +.+++|+|+|+.+++.|+++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~   82 (240)
T 3dli_A           42 CRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK   82 (240)
T ss_dssp             CSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT
T ss_pred             CCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh
Confidence            468999999999998777654  77899999999999998776

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.76  E-value=1.6e-08  Score=96.62  Aligned_cols=55  Identities=9%  Similarity=0.006  Sum_probs=49.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI  171 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~  171 (496)
                      +.+|||||||+|.+++.++...|+.+++|+|||+.|+++|++|++.++ +..++++
T Consensus        50 ~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g-~~~~v~~  104 (200)
T 3fzg_A           50 VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLK-TTIKYRF  104 (200)
T ss_dssp             CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSC-CSSEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCccEEE
Confidence            468999999999999999888899999999999999999999999985 7666766

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.75  E-value=1.4e-08  Score=107.05  Aligned_cols=61  Identities=15%  Similarity=0.094  Sum_probs=49.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHH-------HCCCC-CCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVK-------SNPHI-SELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~-------~N~~L-~~rI~~v~~d~~  177 (496)
                      ..+|||||||+|.+.+.++...+..+++|+|+++.++++|++|++       .++ + ..+|+++.+|..
T Consensus       174 gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~G-l~~~rVefi~GD~~  242 (438)
T 3uwp_A          174 DDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYG-KKHAEYTLERGDFL  242 (438)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHT-BCCCEEEEEECCTT
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhC-CCCCCeEEEECccc
Confidence            458999999999998888876554469999999999999999863       343 4 368999999864

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.75  E-value=3e-08  Score=95.96  Aligned_cols=64  Identities=23%  Similarity=0.188  Sum_probs=43.2

Q ss_pred             HHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCC-eeEEecCcHHHHHHHHHHHHHC
Q 010968           94 YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVKSN  162 (496)
Q Consensus        94 yi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~-~v~avDIs~~AL~~A~~N~~~N  162 (496)
                      ..+|+.+.+......   ......+|||||||+|.....++  ..+. +|+|+|+|+.|++.|+++++.+
T Consensus        37 ~~~~~~~~~~~~~~~---~~~~g~~vLDiGCG~G~~~~~~~--~~~~~~v~g~D~s~~~l~~a~~~~~~~  101 (263)
T 2a14_A           37 MLKFNLECLHKTFGP---GGLQGDTLIDIGSGPTIYQVLAA--CDSFQDITLSDFTDRNREELEKWLKKE  101 (263)
T ss_dssp             HHHHHHHHHHHHHST---TSCCEEEEEESSCTTCCGGGTTG--GGTEEEEEEEESCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhcC---CCCCCceEEEeCCCccHHHHHHH--HhhhcceeeccccHHHHHHHHHHHhcC
Confidence            677876655421100   01134589999999995533333  2343 7999999999999999998765

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.74  E-value=1.9e-07  Score=92.99  Aligned_cols=59  Identities=14%  Similarity=0.011  Sum_probs=53.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...++..+|+.+++++|+ +.+++.|++++...+ +.++|+++..|.
T Consensus       170 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~  228 (332)
T 3i53_A          170 LGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTG-LSGRAQVVVGSF  228 (332)
T ss_dssp             GSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT-CTTTEEEEECCT
T ss_pred             CCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcC-cCcCeEEecCCC
Confidence            46899999999999999998899999999999 999999999999884 888999998864

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.74  E-value=8.7e-08  Score=93.29  Aligned_cols=45  Identities=20%  Similarity=0.153  Sum_probs=36.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHH
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS  161 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~  161 (496)
                      ..+|||||||+|.. ..++...++.+|+|+|+|+.|++.|+++++.
T Consensus        72 ~~~vLDiGcG~G~~-~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~  116 (289)
T 2g72_A           72 GRTLIDIGSGPTVY-QLLSACSHFEDITMTDFLEVNRQELGRWLQE  116 (289)
T ss_dssp             CSEEEEETCTTCCG-GGTTGGGGCSEEEEECSCHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCcChH-HHHhhccCCCeEEEeCCCHHHHHHHHHHHhh
Confidence            46899999999984 3444445678999999999999999997754

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.73  E-value=3.2e-08  Score=92.47  Aligned_cols=59  Identities=17%  Similarity=0.250  Sum_probs=49.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCC----CCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHI----SELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L----~~rI~~v~~d  175 (496)
                      ..+|||||||+|.+...++... +..+|+|+|+++.+++.|++|+..++ +    ..+++++..|
T Consensus        78 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~v~~~~~d  141 (226)
T 1i1n_A           78 GAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDD-PTLLSSGRVQLVVGD  141 (226)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHC-THHHHTSSEEEEESC
T ss_pred             CCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhc-ccccCCCcEEEEECC
Confidence            4589999999999988888765 44799999999999999999998763 3    3468888776

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.73  E-value=4.3e-08  Score=91.42  Aligned_cols=60  Identities=22%  Similarity=0.211  Sum_probs=46.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCC----------CCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPH----------ISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~----------L~~rI~~v~~d~~  177 (496)
                      ..+|||+|||+|.....|+..  +++|+|+|+|+.|++.|+++....+.          ...+|+++.+|..
T Consensus        23 ~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~   92 (203)
T 1pjz_A           23 GARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF   92 (203)
T ss_dssp             TCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred             CCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccc
Confidence            468999999999998888764  78999999999999999988653100          0235788877743

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.73  E-value=3.4e-08  Score=94.47  Aligned_cols=56  Identities=7%  Similarity=-0.073  Sum_probs=45.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ..+|||||||+|.++..++...+ .+++++|+|+.+++.|+++.+..+   .++.++.++
T Consensus        61 G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~~---~~~~~~~~~  116 (236)
T 3orh_A           61 GGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQT---HKVIPLKGL  116 (236)
T ss_dssp             CEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGCS---SEEEEEESC
T ss_pred             CCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhCC---CceEEEeeh
Confidence            46899999999988777765444 589999999999999999998764   357777665

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.73  E-value=1.2e-07  Score=89.64  Aligned_cols=56  Identities=18%  Similarity=0.328  Sum_probs=46.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...|+..  +.+++|+|+|+.+++.|++++ ..  ...+++++.+|.
T Consensus        40 ~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-~~--~~~~~~~~~~d~   95 (263)
T 2yqz_A           40 EPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKI-AG--VDRKVQVVQADA   95 (263)
T ss_dssp             CCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHT-TT--SCTTEEEEESCT
T ss_pred             CCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh-hc--cCCceEEEEccc
Confidence            468999999999988777654  689999999999999999998 32  345788888764

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.73  E-value=5.8e-08  Score=93.34  Aligned_cols=66  Identities=18%  Similarity=0.036  Sum_probs=49.3

Q ss_pred             HhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 010968           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI  171 (496)
Q Consensus        92 ~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~  171 (496)
                      ..+..++.+.+..         ....+|||||||+|.+...++.  ++.+|+|+|+|+.+++.|+++.        ++++
T Consensus        20 ~~~~~~l~~~~~~---------~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~--------~~~~   80 (261)
T 3ege_A           20 IRIVNAIINLLNL---------PKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHP--------QVEW   80 (261)
T ss_dssp             HHHHHHHHHHHCC---------CTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCT--------TEEE
T ss_pred             HHHHHHHHHHhCC---------CCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcc--------CCEE
Confidence            3455666666642         1346899999999998877764  7789999999999998876543        4778


Q ss_pred             EEccC
Q 010968          172 RKVDN  176 (496)
Q Consensus       172 v~~d~  176 (496)
                      +..|.
T Consensus        81 ~~~d~   85 (261)
T 3ege_A           81 FTGYA   85 (261)
T ss_dssp             ECCCT
T ss_pred             EECch
Confidence            76653

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.72  E-value=1.1e-07  Score=94.88  Aligned_cols=73  Identities=14%  Similarity=0.146  Sum_probs=57.5

Q ss_pred             hHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 010968           93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEI  171 (496)
Q Consensus        93 nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~  171 (496)
                      ....++.+.+..         ....+|||||||+|.++..++...+ +.+|+|+|+|+++++.|++|++.++ +.+ +++
T Consensus        62 ~~~~~l~~~l~~---------~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g-~~~-v~~  130 (317)
T 1dl5_A           62 SLMALFMEWVGL---------DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG-IEN-VIF  130 (317)
T ss_dssp             HHHHHHHHHTTC---------CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT-CCS-EEE
T ss_pred             HHHHHHHHhcCC---------CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-CCC-eEE
Confidence            455555565542         1245899999999999888887766 4789999999999999999999885 654 888


Q ss_pred             EEccC
Q 010968          172 RKVDN  176 (496)
Q Consensus       172 v~~d~  176 (496)
                      +.+|.
T Consensus       131 ~~~d~  135 (317)
T 1dl5_A          131 VCGDG  135 (317)
T ss_dssp             EESCG
T ss_pred             EECCh
Confidence            87763

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.72  E-value=1.6e-07  Score=94.71  Aligned_cols=146  Identities=12%  Similarity=0.069  Sum_probs=90.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|||+|||+|.....|+.... ..+|+|+|+++.+++.+++|+++++ +. +|+++..|....               
T Consensus       103 g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g-~~-~v~~~~~D~~~~---------------  165 (309)
T 2b9e_A          103 GSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG-VS-CCELAEEDFLAV---------------  165 (309)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT-CC-SEEEEECCGGGS---------------
T ss_pred             CCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC-eEEEEeCChHhc---------------
Confidence            35899999999999988887764 4799999999999999999999985 64 588888764210               


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCC--CCCc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGG--TPEE  272 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G--~~~E  272 (496)
                                              ..          ...    ...+||.|++|||+-....- ..+|......  +.. 
T Consensus       166 ------------------------~~----------~~~----~~~~fD~Vl~D~PcSg~G~~-~r~pd~~~~~~~~~~-  205 (309)
T 2b9e_A          166 ------------------------SP----------SDP----RYHEVHYILLDPSCSGSGMP-SRQLEEPGAGTPSPV-  205 (309)
T ss_dssp             ------------------------CT----------TCG----GGTTEEEEEECCCCCC-------------------C-
T ss_pred             ------------------------Cc----------ccc----ccCCCCEEEEcCCcCCCCCC-ccCCChhhhccCCHH-
Confidence                                    00          000    01469999999999654321 1223221100  011 


Q ss_pred             ccccCchHHHHHHHHHHHHHhhcCCeEEE---EEeCCcCcHHHHHHHHHHcC
Q 010968          273 MVCSGGERAFITRIIEDSVALKQTFRWYT---SMVGRKSNLKFLISKLRKVG  321 (496)
Q Consensus       273 mv~~GGel~FI~riI~eS~~ll~~~gwft---smvGk~s~l~~L~~~L~~~g  321 (496)
                      -+.  +-..+..+|++.+..+++ +|.+.   +-+....+-..+...|+++.
T Consensus       206 ~~~--~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene~~v~~~l~~~~  254 (309)
T 2b9e_A          206 RLH--ALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEENEDVVRDALQQNP  254 (309)
T ss_dssp             CHH--HHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGTHHHHHHHHTTST
T ss_pred             HHH--HHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHhHHHHHHHHHhCC
Confidence            000  012345678888877765 56543   23555667677777777653

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.72  E-value=3.7e-07  Score=89.00  Aligned_cols=130  Identities=11%  Similarity=-0.003  Sum_probs=92.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|||||||+|.....|+... +.-+|+|+|+++++++.|+++++..+    .|..+..+...  |.            
T Consensus        78 G~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~----ni~~V~~d~~~--p~------------  139 (233)
T 4df3_A           78 GDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR----NIFPILGDARF--PE------------  139 (233)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT----TEEEEESCTTC--GG------------
T ss_pred             CCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc----CeeEEEEeccC--cc------------
Confidence            3589999999999988888765 66799999999999999999987653    47777776431  10            


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                          .. .  ...+.+|+|+|..|+...                    
T Consensus       140 ------------------------------------~~-~--~~~~~vDvVf~d~~~~~~--------------------  160 (233)
T 4df3_A          140 ------------------------------------KY-R--HLVEGVDGLYADVAQPEQ--------------------  160 (233)
T ss_dssp             ------------------------------------GG-T--TTCCCEEEEEECCCCTTH--------------------
T ss_pred             ------------------------------------cc-c--cccceEEEEEEeccCChh--------------------
Confidence                                                00 0  123679999998765421                    


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEEEEEeC---------CcCcHHHHHHHHHHcCCeeEEEEEe
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVG---------RKSNLKFLISKLRKVGVTIVKTTEF  330 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwftsmvG---------k~s~l~~L~~~L~~~g~~~vk~~ed  330 (496)
                              ...++.++..+++++|.+...+-         -+..++..++.|++.||..+++..+
T Consensus       161 --------~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~i~L  217 (233)
T 4df3_A          161 --------AAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVVHL  217 (233)
T ss_dssp             --------HHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             --------HHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEEEcc
Confidence                    23456777778889988765431         1223556778899999988776654

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.72  E-value=4.5e-08  Score=97.22  Aligned_cols=58  Identities=19%  Similarity=0.043  Sum_probs=52.2

Q ss_pred             CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      .+|||||||+|.+...++...|+.+++++|+ +.+++.|++++..++ +.++|+++..|.
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~  226 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLL-AGERVSLVGGDM  226 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHH-HTTSEEEEESCT
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcC-CCCcEEEecCCC
Confidence            6999999999999999998888999999999 999999999988764 667899988864

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.72  E-value=3.6e-08  Score=93.31  Aligned_cols=46  Identities=26%  Similarity=0.176  Sum_probs=38.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN  162 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N  162 (496)
                      ..+|||||||+|.+...++...+ .+|+|+|+|+.+++.|++++..+
T Consensus        57 ~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~  102 (265)
T 2i62_A           57 GELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKE  102 (265)
T ss_dssp             EEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcC
Confidence            46899999999988776665433 58999999999999999998754

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.71  E-value=2.7e-08  Score=98.95  Aligned_cols=82  Identities=17%  Similarity=0.195  Sum_probs=60.2

Q ss_pred             hHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcC--CeeEEecC
Q 010968           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLG--WSFVGSDM  147 (496)
Q Consensus        70 ~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~--~~v~avDI  147 (496)
                      +..||-+|-++           .+.+..|.+.+..         ....+|||||||+|.+...|+.....  .+|+|+|+
T Consensus        17 ~k~~GQ~fL~d-----------~~i~~~iv~~~~~---------~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDi   76 (279)
T 3uzu_A           17 RKRFGQNFLVD-----------HGVIDAIVAAIRP---------ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVEL   76 (279)
T ss_dssp             -CCCSCCEECC-----------HHHHHHHHHHHCC---------CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEEC
T ss_pred             cccCCccccCC-----------HHHHHHHHHhcCC---------CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEEC
Confidence            44566666554           3456666666642         12458999999999999888876542  45999999


Q ss_pred             cHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          148 TDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       148 s~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      |+++++.|++|.  .    .+++++.+|..
T Consensus        77 d~~~l~~a~~~~--~----~~v~~i~~D~~  100 (279)
T 3uzu_A           77 DRDLIGRLEQRF--G----ELLELHAGDAL  100 (279)
T ss_dssp             CHHHHHHHHHHH--G----GGEEEEESCGG
T ss_pred             CHHHHHHHHHhc--C----CCcEEEECChh
Confidence            999999999994  2    36999999853

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.71  E-value=1.4e-07  Score=89.19  Aligned_cols=83  Identities=14%  Similarity=0.227  Sum_probs=63.1

Q ss_pred             EEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHH
Q 010968           77 WWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAE  156 (496)
Q Consensus        77 ~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~  156 (496)
                      ..+..+..+..    ...+.++.+.+..         ....+|||||||+|.+...++...+ .+++++|+++.+++.|+
T Consensus        66 ~~~~~~~~~~~----~~~~~~~~~~l~~---------~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~  131 (235)
T 1jg1_A           66 LPIPAGQTVSA----PHMVAIMLEIANL---------KPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAK  131 (235)
T ss_dssp             EECSTTCEECC----HHHHHHHHHHHTC---------CTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHH
T ss_pred             cccCCCceecc----HHHHHHHHHhcCC---------CCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHH
Confidence            44555555543    4556666666642         1235899999999999988887776 89999999999999999


Q ss_pred             HHHHHCCCCCCcEEEEEcc
Q 010968          157 KNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       157 ~N~~~N~~L~~rI~~v~~d  175 (496)
                      +|++.++ +.+ ++++.+|
T Consensus       132 ~~~~~~~-~~~-v~~~~~d  148 (235)
T 1jg1_A          132 RNLERAG-VKN-VHVILGD  148 (235)
T ss_dssp             HHHHHTT-CCS-EEEEESC
T ss_pred             HHHHHcC-CCC-cEEEECC
Confidence            9999885 644 8887775

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.71  E-value=1.6e-08  Score=101.84  Aligned_cols=58  Identities=19%  Similarity=0.186  Sum_probs=51.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..++||+|||+|..+..++...++.+|+|+|+|+.|++.|++|++.++   ++++++.+|.
T Consensus        27 g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g---~~v~~v~~d~   84 (301)
T 1m6y_A           27 EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS---DRVSLFKVSY   84 (301)
T ss_dssp             TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT---TTEEEEECCG
T ss_pred             CCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEECCH
Confidence            358999999999999999888778899999999999999999998873   5799998873

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.70  E-value=2.5e-07  Score=91.43  Aligned_cols=61  Identities=11%  Similarity=0.023  Sum_probs=49.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC-CC-CCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP-HI-SELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~-~L-~~rI~~v~~d~  176 (496)
                      +.+|||||||+|.++..++...+..+++++|+|+.+++.|++++..++ .+ ..+++++.+|.
T Consensus        79 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~  141 (283)
T 2i7c_A           79 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDA  141 (283)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCH
T ss_pred             CCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECCh
Confidence            468999999999998888765567899999999999999999986431 12 35788887763

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.70  E-value=3.3e-08  Score=102.58  Aligned_cols=58  Identities=12%  Similarity=0.112  Sum_probs=48.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ...|||||||+|.+++ +|++....+|+|+|.|+ +++.|+++++.|+ ++++|+++.++.
T Consensus        84 ~k~VLDvG~GtGiLs~-~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~-~~~~i~~i~~~~  141 (376)
T 4hc4_A           84 GKTVLDVGAGTGILSI-FCAQAGARRVYAVEASA-IWQQAREVVRFNG-LEDRVHVLPGPV  141 (376)
T ss_dssp             TCEEEEETCTTSHHHH-HHHHTTCSEEEEEECST-THHHHHHHHHHTT-CTTTEEEEESCT
T ss_pred             CCEEEEeCCCccHHHH-HHHHhCCCEEEEEeChH-HHHHHHHHHHHcC-CCceEEEEeeee
Confidence            3589999999997754 44444445899999996 8899999999995 999999998874

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.70  E-value=1.6e-08  Score=102.04  Aligned_cols=86  Identities=12%  Similarity=0.096  Sum_probs=65.7

Q ss_pred             CCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHH
Q 010968           82 GQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS  161 (496)
Q Consensus        82 g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~  161 (496)
                      +.|... |--.+|+..+...+....+      ..+.+|||||||+|.+..+++++.++.+|+|+|+|+++++.|++|++.
T Consensus        96 ~~l~~f-py~~~~~~l~~~E~~la~l------~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~  168 (298)
T 3fpf_A           96 ETLRSF-YFYPRYLELLKNEAALGRF------RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEG  168 (298)
T ss_dssp             HHHHTS-TTHHHHHHHHHHHHHHTTC------CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHH
T ss_pred             HhhccC-CCcccHHHHHHHHHHHcCC------CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHh
Confidence            356655 6667788887665432211      234689999999987665555667899999999999999999999998


Q ss_pred             CCCCCCcEEEEEccC
Q 010968          162 NPHISELIEIRKVDN  176 (496)
Q Consensus       162 N~~L~~rI~~v~~d~  176 (496)
                      .+ + ++|+++.+|.
T Consensus       169 ~g-l-~~v~~v~gDa  181 (298)
T 3fpf_A          169 LG-V-DGVNVITGDE  181 (298)
T ss_dssp             HT-C-CSEEEEESCG
T ss_pred             cC-C-CCeEEEECch
Confidence            75 7 7899998873

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.70  E-value=1.1e-07  Score=96.55  Aligned_cols=60  Identities=17%  Similarity=-0.036  Sum_probs=54.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ..+|||||||+|.+...|+.++|+.+++++|+ +.+++.|++++...+ +.++|+++.+|..
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~~  239 (363)
T 3dp7_A          180 PKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLS-GSERIHGHGANLL  239 (363)
T ss_dssp             CSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCT-TGGGEEEEECCCC
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcC-cccceEEEEcccc
Confidence            46899999999999999999999999999999 999999999998874 7789999988753

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.69  E-value=1.6e-07  Score=83.55  Aligned_cols=118  Identities=12%  Similarity=0.085  Sum_probs=82.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||||||+|.+...++...  .+++|+|+++.+++.|+++   .    .+++++..| .                  
T Consensus        18 ~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~---~----~~v~~~~~d-~------------------   69 (170)
T 3i9f_A           18 KGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEK---F----DSVITLSDP-K------------------   69 (170)
T ss_dssp             CEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHH---C----TTSEEESSG-G------------------
T ss_pred             CCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHh---C----CCcEEEeCC-C------------------
Confidence            4589999999999988887655  3999999999999999998   2    246666443 1                  


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                            ++  ..++||+|+|+-.+..-               .+    
T Consensus        70 --------------------------------------~~--~~~~~D~v~~~~~l~~~---------------~~----   90 (170)
T 3i9f_A           70 --------------------------------------EI--PDNSVDFILFANSFHDM---------------DD----   90 (170)
T ss_dssp             --------------------------------------GS--CTTCEEEEEEESCSTTC---------------SC----
T ss_pred             --------------------------------------CC--CCCceEEEEEccchhcc---------------cC----
Confidence                                                  00  24689999999766431               11    


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEE-eCCc-----------CcHHHHHHHHHHcCCeeEEEEE
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSM-VGRK-----------SNLKFLISKLRKVGVTIVKTTE  329 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsm-vGk~-----------s~l~~L~~~L~~~g~~~vk~~e  329 (496)
                             ...++++....++++|++... ....           -+.+.+.+.|+  |+..+++..
T Consensus        91 -------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~  147 (170)
T 3i9f_A           91 -------KQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFN  147 (170)
T ss_dssp             -------HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEEC
T ss_pred             -------HHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccC
Confidence                   245666667778888876543 2211           24667888887  998777554

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.69  E-value=3.6e-08  Score=96.22  Aligned_cols=70  Identities=14%  Similarity=0.111  Sum_probs=52.6

Q ss_pred             HhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 010968           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI  171 (496)
Q Consensus        92 ~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~  171 (496)
                      .+.+.+|.+.+..         ....+|||||||+|.+...|+.. +..+++|+|+|+.+++.|++| . .    .++++
T Consensus        17 ~~i~~~iv~~~~~---------~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~-~-~----~~v~~   80 (249)
T 3ftd_A           17 EGVLKKIAEELNI---------EEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI-G-D----ERLEV   80 (249)
T ss_dssp             HHHHHHHHHHTTC---------CTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS-C-C----TTEEE
T ss_pred             HHHHHHHHHhcCC---------CCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc-c-C----CCeEE
Confidence            3456666665542         12458999999999998887654 457999999999999999988 2 1    36899


Q ss_pred             EEccCC
Q 010968          172 RKVDNS  177 (496)
Q Consensus       172 v~~d~~  177 (496)
                      +.+|..
T Consensus        81 i~~D~~   86 (249)
T 3ftd_A           81 INEDAS   86 (249)
T ss_dssp             ECSCTT
T ss_pred             EEcchh
Confidence            888754

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.68  E-value=2.7e-08  Score=95.09  Aligned_cols=59  Identities=15%  Similarity=0.107  Sum_probs=47.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCc-HHHHHHH---HHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT-DVALEWA---EKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs-~~AL~~A---~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...|+.+.++++|+|+|+| +.+++.|   +++++..+ +. +|.++.+|.
T Consensus        25 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~-~~-~v~~~~~d~   87 (225)
T 3p2e_A           25 DRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGG-LS-NVVFVIAAA   87 (225)
T ss_dssp             SEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTC-CS-SEEEECCBT
T ss_pred             CCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcC-CC-CeEEEEcCH
Confidence            358999999999998888877788999999999 5556655   88887774 54 588877764

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.66  E-value=3e-07  Score=83.42  Aligned_cols=154  Identities=12%  Similarity=0.063  Sum_probs=95.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcC---------CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEE-EccCCCCCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLG---------WSFVGSDMTDVALEWAEKNVKSNPHISELIEIR-KVDNSESTPSIQE  185 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~---------~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v-~~d~~~~~p~~~~  185 (496)
                      ..+|||||||+|.+...|+...+.         .+|+|+|+++.+           . + .+++++ .+|...  ..   
T Consensus        23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~-~-~~~~~~~~~d~~~--~~---   84 (196)
T 2nyu_A           23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------P-L-EGATFLCPADVTD--PR---   84 (196)
T ss_dssp             TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------C-C-TTCEEECSCCTTS--HH---
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------c-C-CCCeEEEeccCCC--HH---
Confidence            358999999999999999887654         799999999831           1 2 246666 554321  00   


Q ss_pred             cccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcc
Q 010968          186 SLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTS  265 (496)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~a  265 (496)
                                                        ...       .+...+  ++++||+|+||+++........      
T Consensus        85 ----------------------------------~~~-------~~~~~~--~~~~fD~V~~~~~~~~~~~~~~------  115 (196)
T 2nyu_A           85 ----------------------------------TSQ-------RILEVL--PGRRADVILSDMAPNATGFRDL------  115 (196)
T ss_dssp             ----------------------------------HHH-------HHHHHS--GGGCEEEEEECCCCCCCSCHHH------
T ss_pred             ----------------------------------HHH-------HHHHhc--CCCCCcEEEeCCCCCCCCCccc------
Confidence                                              000       000001  1357999999986543211000      


Q ss_pred             cCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecCCCe---eEEEEEE
Q 010968          266 CGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQT---CRWGLAW  342 (496)
Q Consensus       266 l~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t---~Rw~lAW  342 (496)
                          +.     .........+++++..+++++|++.+.+........+...+++. +..+++.++..++.   .+|+++-
T Consensus       116 ----~~-----~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~-f~~v~~~~~~~~~~~~~e~~~v~~  185 (196)
T 2nyu_A          116 ----DH-----DRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEE-FQNVRIIKPEASRKESSEVYFLAT  185 (196)
T ss_dssp             ----HH-----HHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHH-EEEEEEECCC--------EEEEEE
T ss_pred             ----CH-----HHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHH-hcceEEECCcccCccCceEEEEee
Confidence                00     00234456788888999999999988766566777888887764 66778887777653   5677776


Q ss_pred             eeCC
Q 010968          343 SFVP  346 (496)
Q Consensus       343 sF~~  346 (496)
                      -|..
T Consensus       186 g~~~  189 (196)
T 2nyu_A          186 QYHG  189 (196)
T ss_dssp             EECC
T ss_pred             ecCC
Confidence            6653

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.64  E-value=2e-09  Score=103.45  Aligned_cols=55  Identities=13%  Similarity=0.192  Sum_probs=45.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...|+..  +.+++|+|+|+++++.|++|++.    ..+++++.+|.
T Consensus        30 ~~~VLDiG~G~G~~~~~l~~~--~~~v~~id~~~~~~~~a~~~~~~----~~~v~~~~~D~   84 (245)
T 1yub_A           30 TDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKL----NTRVTLIHQDI   84 (245)
T ss_dssp             SEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTT----CSEEEECCSCC
T ss_pred             CCEEEEEeCCCCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHhcc----CCceEEEECCh
Confidence            458999999999998888765  37999999999999999988762    24688887764

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.63  E-value=4e-08  Score=97.62  Aligned_cols=44  Identities=20%  Similarity=0.284  Sum_probs=38.1

Q ss_pred             CCeEEEEcCchhH----HHHHHHHHhc----CCeeEEecCcHHHHHHHHHHH
Q 010968          116 KVKGFDIGTGANC----IYPLLGASLL----GWSFVGSDMTDVALEWAEKNV  159 (496)
Q Consensus       116 ~~~vLDIGTGSG~----I~ilLa~~~~----~~~v~avDIs~~AL~~A~~N~  159 (496)
                      ..+|+|+|||||.    |++.|+...+    +++|+|+|||++||+.|++++
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~  157 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGI  157 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTE
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcC
Confidence            4799999999998    7777766545    589999999999999999986

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.62  E-value=3.9e-07  Score=85.61  Aligned_cols=59  Identities=15%  Similarity=0.206  Sum_probs=48.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc------CCeeEEecCcHHHHHHHHHHHHHCCCC----CCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL------GWSFVGSDMTDVALEWAEKNVKSNPHI----SELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~------~~~v~avDIs~~AL~~A~~N~~~N~~L----~~rI~~v~~d  175 (496)
                      ..+|||||||+|.+...|+....      ..+++++|+++++++.|++|++.++ +    ..+++++.+|
T Consensus        85 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~~~~v~~~~~d  153 (227)
T 1r18_A           85 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDD-RSMLDSGQLLIVEGD  153 (227)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHH-HHHHHHTSEEEEESC
T ss_pred             CCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcC-ccccCCCceEEEECC
Confidence            35899999999999888887654      3699999999999999999997652 1    2468888776

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.61  E-value=4.3e-08  Score=94.20  Aligned_cols=76  Identities=13%  Similarity=0.052  Sum_probs=55.7

Q ss_pred             CCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHH----hcCCeeEEecCcHHHHHHHHH
Q 010968           82 GQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGAS----LLGWSFVGSDMTDVALEWAEK  157 (496)
Q Consensus        82 g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~----~~~~~v~avDIs~~AL~~A~~  157 (496)
                      ++.++..|.....+   ..++...         .+.+|||||||+|.+...|+..    .++.+|+|+|+++.+++.|+ 
T Consensus        60 ~~~~~~~p~~~~~l---~~~l~~~---------~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~-  126 (236)
T 2bm8_A           60 GLRMLKDPDTQAVY---HDMLWEL---------RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-  126 (236)
T ss_dssp             TEECCSCHHHHHHH---HHHHHHH---------CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-
T ss_pred             cccccCCHHHHHHH---HHHHHhc---------CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh-
Confidence            56677655444444   3444321         2358999999999999988876    46789999999999999887 


Q ss_pred             HHHHCCCCCCcEEEEEccC
Q 010968          158 NVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       158 N~~~N~~L~~rI~~v~~d~  176 (496)
                        .    +..+|+++.+|.
T Consensus       127 --~----~~~~v~~~~gD~  139 (236)
T 2bm8_A          127 --S----DMENITLHQGDC  139 (236)
T ss_dssp             --G----GCTTEEEEECCS
T ss_pred             --c----cCCceEEEECcc
Confidence              1    235799998874

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.60  E-value=3.6e-07  Score=85.38  Aligned_cols=81  Identities=20%  Similarity=0.151  Sum_probs=59.0

Q ss_pred             EEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHH
Q 010968           77 WWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAE  156 (496)
Q Consensus        77 ~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~  156 (496)
                      +.+..++.+..    ...+.++.+.+..         ....+|||||||+|.+...++...  .+++|+|+++.+++.|+
T Consensus        45 ~~~~~~~~~~~----~~~~~~~~~~~~~---------~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~  109 (231)
T 1vbf_A           45 LPILPGINTTA----LNLGIFMLDELDL---------HKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYAS  109 (231)
T ss_dssp             EEEETTEEECC----HHHHHHHHHHTTC---------CTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHH
T ss_pred             eeeCCCCccCC----HHHHHHHHHhcCC---------CCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHH
Confidence            44444554433    4455566666532         124589999999999988887653  79999999999999999


Q ss_pred             HHHHHCCCCCCcEEEEEccC
Q 010968          157 KNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       157 ~N~~~N~~L~~rI~~v~~d~  176 (496)
                      +|+..++    +++++.+|.
T Consensus       110 ~~~~~~~----~v~~~~~d~  125 (231)
T 1vbf_A          110 KLLSYYN----NIKLILGDG  125 (231)
T ss_dssp             HHHTTCS----SEEEEESCG
T ss_pred             HHHhhcC----CeEEEECCc
Confidence            9998652    688887763

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.59  E-value=2.6e-07  Score=85.82  Aligned_cols=59  Identities=12%  Similarity=-0.014  Sum_probs=47.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHH----HCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVK----SNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~----~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.++..|+...|+.+|+|+|+|+.+++.+.++++    ..+ + .+++++.+|.
T Consensus        28 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~-~-~~v~~~~~d~   90 (218)
T 3mq2_A           28 DDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGG-L-PNLLYLWATA   90 (218)
T ss_dssp             SEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTC-C-TTEEEEECCS
T ss_pred             CCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcC-C-CceEEEecch
Confidence            458999999999999999988889999999999998886444443    332 3 3688888874

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.57  E-value=8.7e-07  Score=82.59  Aligned_cols=122  Identities=17%  Similarity=0.214  Sum_probs=82.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||||||+|.+...++..      +|+|+++.+++.|+++    +     ++++..|...                 
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~----~-----~~~~~~d~~~-----------------   95 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR----G-----VFVLKGTAEN-----------------   95 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT----T-----CEEEECBTTB-----------------
T ss_pred             CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc----C-----CEEEEccccc-----------------
Confidence            358999999999887666432      9999999999999887    2     5676665321                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         +  .  ...++||+|+|+-.+...               .+    
T Consensus        96 -----------------------------------~--~--~~~~~fD~v~~~~~l~~~---------------~~----  117 (219)
T 1vlm_A           96 -----------------------------------L--P--LKDESFDFALMVTTICFV---------------DD----  117 (219)
T ss_dssp             -----------------------------------C--C--SCTTCEEEEEEESCGGGS---------------SC----
T ss_pred             -----------------------------------C--C--CCCCCeeEEEEcchHhhc---------------cC----
Confidence                                               0  0  024579999998654321               01    


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeC-----------------------CcCcHHHHHHHHHHcCCeeEEEEEecC
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVG-----------------------RKSNLKFLISKLRKVGVTIVKTTEFVQ  332 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvG-----------------------k~s~l~~L~~~L~~~g~~~vk~~ed~q  332 (496)
                             ...++++...+++++|++.....                       ..-+...+.+.|++.|+..+.+.+...
T Consensus       118 -------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~  190 (219)
T 1vlm_A          118 -------PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTLF  190 (219)
T ss_dssp             -------HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEECC
T ss_pred             -------HHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecccC
Confidence                   12344555556666666544321                       123578899999999999888887765


Q ss_pred             CC
Q 010968          333 GQ  334 (496)
Q Consensus       333 G~  334 (496)
                      +.
T Consensus       191 ~~  192 (219)
T 1vlm_A          191 KH  192 (219)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.57  E-value=5.6e-07  Score=82.72  Aligned_cols=42  Identities=19%  Similarity=0.208  Sum_probs=36.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHH
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNV  159 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~  159 (496)
                      ..+|||||||+|.+...++..  +.+++|+|+++.+++.|+++.
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~~~~~~~~~~~~~   74 (230)
T 3cc8_A           33 WKEVLDIGCSSGALGAAIKEN--GTRVSGIEAFPEAAEQAKEKL   74 (230)
T ss_dssp             CSEEEEETCTTSHHHHHHHTT--TCEEEEEESSHHHHHHHHTTS
T ss_pred             CCcEEEeCCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC
Confidence            468999999999998887765  589999999999999987653

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.56  E-value=5.1e-07  Score=87.92  Aligned_cols=42  Identities=12%  Similarity=0.151  Sum_probs=36.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHH
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNV  159 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~  159 (496)
                      ..+|||+|||+|..+..|+..  +++|+|+|+|+.|++.|+++.
T Consensus        69 ~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~  110 (252)
T 2gb4_A           69 GLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQ  110 (252)
T ss_dssp             SCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHT
T ss_pred             CCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhc
Confidence            468999999999988888754  789999999999999998765

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.55  E-value=2.5e-06  Score=82.81  Aligned_cols=130  Identities=12%  Similarity=0.059  Sum_probs=85.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|||+|||+|.....++... +..+|+|+|+++.+++...+.++..    .+|.++.+|...  |             
T Consensus        77 g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r----~nv~~i~~Da~~--~-------------  137 (232)
T 3id6_C           77 GTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR----PNIFPLLADARF--P-------------  137 (232)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC----TTEEEEECCTTC--G-------------
T ss_pred             CCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc----CCeEEEEccccc--c-------------
Confidence            4589999999999888887664 4679999999999986555544443    248888887431  0             


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                         ..+..+   .++||+|+||-|.                  .+   
T Consensus       138 -----------------------------------~~~~~~---~~~~D~I~~d~a~------------------~~---  158 (232)
T 3id6_C          138 -----------------------------------QSYKSV---VENVDVLYVDIAQ------------------PD---  158 (232)
T ss_dssp             -----------------------------------GGTTTT---CCCEEEEEECCCC------------------TT---
T ss_pred             -----------------------------------hhhhcc---ccceEEEEecCCC------------------hh---
Confidence                                               001111   3579999999653                  01   


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEEEEEeC---------CcCcHHHHHHHHHHcCCeeEEEEEe
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVG---------RKSNLKFLISKLRKVGVTIVKTTEF  330 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwftsmvG---------k~s~l~~L~~~L~~~g~~~vk~~ed  330 (496)
                          .   ...++..+..+++++|++...+-         .+...+..++.|++.|+..+++...
T Consensus       159 ----~---~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l  216 (232)
T 3id6_C          159 ----Q---TDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINL  216 (232)
T ss_dssp             ----H---HHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEEC
T ss_pred             ----H---HHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEecc
Confidence                0   11123344447888888765541         2234567888999999987776643

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.55  E-value=3.1e-08  Score=97.02  Aligned_cols=69  Identities=10%  Similarity=-0.035  Sum_probs=50.4

Q ss_pred             hHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEE
Q 010968           93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIR  172 (496)
Q Consensus        93 nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v  172 (496)
                      +.+.+|.+.+..         ....+|||||||+|.+.. ++ +....+|+|+|+|+++++.|++|...+    .+++++
T Consensus         8 ~i~~~iv~~~~~---------~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~----~~v~~i   72 (252)
T 1qyr_A            8 FVIDSIVSAINP---------QKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLG----PKLTIY   72 (252)
T ss_dssp             HHHHHHHHHHCC---------CTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTG----GGEEEE
T ss_pred             HHHHHHHHhcCC---------CCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccC----CceEEE
Confidence            456666666642         123579999999999988 54 332233999999999999999887543    368998


Q ss_pred             EccC
Q 010968          173 KVDN  176 (496)
Q Consensus       173 ~~d~  176 (496)
                      .+|.
T Consensus        73 ~~D~   76 (252)
T 1qyr_A           73 QQDA   76 (252)
T ss_dssp             CSCG
T ss_pred             ECch
Confidence            8874

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.54  E-value=1.7e-06  Score=80.59  Aligned_cols=52  Identities=13%  Similarity=0.155  Sum_probs=43.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...|+...+  +++|+|+|+.+++.|+++.       .+++++.+|.
T Consensus        41 ~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~-------~~~~~~~~d~   92 (239)
T 3bxo_A           41 ASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRL-------PDATLHQGDM   92 (239)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHC-------TTCEEEECCT
T ss_pred             CCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhC-------CCCEEEECCH
Confidence            46899999999999888877654  8999999999999998874       1367777764

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.52  E-value=4.5e-07  Score=90.95  Aligned_cols=152  Identities=9%  Similarity=0.033  Sum_probs=88.3

Q ss_pred             CcEEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHH
Q 010968          240 EQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRK  319 (496)
Q Consensus       240 e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~  319 (496)
                      ++||+|+||++.-.....       ... ...       ...++.++++++.++++++|+|.+.+-.....+.+.+.+++
T Consensus       122 ~~fD~Vvsn~~~~~~g~~-------~~d-~~~-------~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~  186 (290)
T 2xyq_A          122 NKWDLIISDMYDPRTKHV-------TKE-NDS-------KEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGH  186 (290)
T ss_dssp             SCEEEEEECCCCCC---C-------CSC-CCC-------CCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTT
T ss_pred             CcccEEEEcCCccccccc-------ccc-ccc-------hHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHH
Confidence            579999999752111000       011 111       35567899999999999999998866555667789999999


Q ss_pred             cCCeeEEEEEecCCCeeEEEEEEeeCCccccccCCCcccccccc-hhhhhhhhchhhhHHHHhHHHHhhhcCcccccccc
Q 010968          320 VGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKKNLS-FMLEGVQRQFSALDVLQSIETFFSASGASCKLNAS  398 (496)
Q Consensus       320 ~g~~~vk~~ed~qG~t~Rw~lAWsF~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (496)
                      .|+..++++.--......++++..|....+    |..+...-|. ++...   . +. ..--+-.+.+.....+|+...+
T Consensus       187 ~GF~~v~~~asr~~s~e~~lv~~~~~~~~~----~~i~~~~~h~~~i~~~---~-~~-~~~~~~~~~~~~~~~~~~~~~~  257 (290)
T 2xyq_A          187 FSWWTAFVTNVNASSSEAFLIGANYLGKPK----EQIDGYTMHANYIFWR---N-TN-PIQLSSYSLFDMSKFPLKLRGT  257 (290)
T ss_dssp             EEEEEEEEEGGGTTSSCEEEEEEEECSSCS----SCCCHHHHHHHHHHHH---H-HS-CCCCCCGGGGCCTTCSCCCCCC
T ss_pred             cCCcEEEEEEcCCCchheEEecCCccCCCc----ccCCccccccceEEEe---c-cc-cccCCCCCHHHHHhhhhhhhcc
Confidence            988777766111112255677777764321    1111111111 11110   0 00 0001234556666778887753


Q ss_pred             eeEEEeecCchhhhhhhhcc
Q 010968          399 SFTVNITVSNDQCNTILKNE  418 (496)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~  418 (496)
                         .-++.-++|.+.|+++=
T Consensus       258 ---~~~~~~~~~~~~~~~~~  274 (290)
T 2xyq_A          258 ---AVMSLKENQINDMIYSL  274 (290)
T ss_dssp             ---EEECCCGGGCCHHHHHH
T ss_pred             ---eeechhhccHHHHHHHH
Confidence               45777888998887654

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.49  E-value=5.1e-08  Score=96.20  Aligned_cols=58  Identities=10%  Similarity=0.081  Sum_probs=45.8

Q ss_pred             CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC---C---C-CCCcEEEEEccC
Q 010968          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN---P---H-ISELIEIRKVDN  176 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N---~---~-L~~rI~~v~~d~  176 (496)
                      .+|||+|||+|..++.++..  +.+|+++|+++.+++++++|++..   .   + +..+|+++.+|.
T Consensus        90 ~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~  154 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             CEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence            58999999999999888875  678999999999888888876422   1   1 225799988873

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.49  E-value=1.1e-07  Score=102.62  Aligned_cols=118  Identities=24%  Similarity=0.330  Sum_probs=69.1

Q ss_pred             CCCCCCCCCCCCCHHHHHhhCCCccccccccCCCCcceecCChhhHHHHHHHHHhHhcCcEEEecCCCeeCCCCCcHhHH
Q 010968           16 IHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYI   95 (496)
Q Consensus        16 mHprN~y~~~~pDF~~La~~yP~f~~~v~~~~~G~~~IDf~d~~A~r~Lt~aLL~~ffGL~~~Vp~g~LiPrvP~R~nyi   95 (496)
                      -|..|.|....-+-..+.+..|+.=.-+.    |...  |.+.                         .--....|.++|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~pe~y~~i~----~~~~--~~~~-------------------------~~r~~~~r~~~i   53 (569)
T 4azs_A            5 HHHENLYFQGTKDLNTLVSELPEIYQTIF----GHPE--WDGD-------------------------AARDCNQRLDLI   53 (569)
T ss_dssp             ------------CHHHHHHHSSCCCBCCT----TCGG--GTTT-------------------------CSBCCHHHHHHH
T ss_pred             cccccccccccccHHHHHhhCHHHHhhhc----CChh--hccc-------------------------cccchHHHHHHH
Confidence            46778888777788888888876332221    1111  1110                         001112355555


Q ss_pred             HHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968           96 HWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus        96 ~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ....+.+...       -+++.+|||||||.|.++..||+.  +++|+|+|+++.++++|+..+..++.+  .|+++.++
T Consensus        54 ~~~~~~~~~~-------~~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~--~~~~~~~~  122 (569)
T 4azs_A           54 TEQYDNLSRA-------LGRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDF--AAEFRVGR  122 (569)
T ss_dssp             HHHHHHHHHH-------HTSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTS--EEEEEECC
T ss_pred             HHHHHHHHhh-------cCCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCC--ceEEEECC
Confidence            5444444321       135679999999999998888754  889999999999999999999877523  48888775

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.47  E-value=6.3e-07  Score=94.61  Aligned_cols=59  Identities=15%  Similarity=0.076  Sum_probs=50.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHH-------HHHHHHCCCCC-CcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWA-------EKNVKSNPHIS-ELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A-------~~N~~~N~~L~-~rI~~v~~d  175 (496)
                      ..+|||||||+|.++..++...+..+|+|+|+++.+++.|       ++|++.++ +. .+|+++.+|
T Consensus       243 g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~G-l~~~nV~~i~gD  309 (433)
T 1u2z_A          243 GDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYG-MRLNNVEFSLKK  309 (433)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTT-BCCCCEEEEESS
T ss_pred             CCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcC-CCCCceEEEEcC
Confidence            4589999999999998888776667899999999999999       99998874 54 679988775

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.45  E-value=4.9e-07  Score=85.23  Aligned_cols=55  Identities=24%  Similarity=0.280  Sum_probs=45.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ..+|||||||+|.+...|+...+  +|+|+|+|+.+++.|+++...     .+++++.+|..
T Consensus        57 ~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~-----~~~~~~~~d~~  111 (245)
T 3ggd_A           57 ELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTA-----ANISYRLLDGL  111 (245)
T ss_dssp             TSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCC-----TTEEEEECCTT
T ss_pred             CCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcc-----cCceEEECccc
Confidence            45899999999999888877654  899999999999999998732     25889888753

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.42  E-value=4.1e-06  Score=81.78  Aligned_cols=47  Identities=19%  Similarity=0.131  Sum_probs=36.9

Q ss_pred             CCeEEEEcCchhHHHHH----HHHHhcCCee--EEecCcHHHHHHHHHHHHHC
Q 010968          116 KVKGFDIGTGANCIYPL----LGASLLGWSF--VGSDMTDVALEWAEKNVKSN  162 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~il----La~~~~~~~v--~avDIs~~AL~~A~~N~~~N  162 (496)
                      +.+|||||||+|.+...    ++.+.+++.+  +|+|+|+++++.|+++++..
T Consensus        53 ~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~  105 (292)
T 2aot_A           53 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKT  105 (292)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTC
T ss_pred             CCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhc
Confidence            45899999999976543    3334467755  99999999999999998753

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.41  E-value=1.5e-06  Score=85.57  Aligned_cols=61  Identities=16%  Similarity=0.121  Sum_probs=47.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCC-----CCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPH-----ISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~-----L~~rI~~v~~d~~  177 (496)
                      ..+|||||||+|.+...++. .+..+++|+|+|+.+++.|+++...++.     ...+++++..|..
T Consensus        35 ~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~  100 (313)
T 3bgv_A           35 DITVLDLGCGKGGDLLKWKK-GRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSS  100 (313)
T ss_dssp             CCEEEEETCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTT
T ss_pred             CCEEEEECCCCcHHHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEeccc
Confidence            46899999999998777765 4578999999999999999999875310     1236888888743

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.40  E-value=7e-07  Score=91.59  Aligned_cols=41  Identities=12%  Similarity=0.123  Sum_probs=35.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHH
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN  158 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N  158 (496)
                      ..+|||||||+|.+...|+..  +++++|+|+|+.+++.|+++
T Consensus       108 ~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~  148 (416)
T 4e2x_A          108 DPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK  148 (416)
T ss_dssp             SCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT
T ss_pred             CCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc
Confidence            468999999999987777653  67999999999999999876

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.39  E-value=4.1e-07  Score=87.09  Aligned_cols=53  Identities=21%  Similarity=0.244  Sum_probs=44.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ..+|||||||+|.+...++...++.+++|+|+++.+++.|+++.       .++.++..|
T Consensus        86 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~d  138 (269)
T 1p91_A           86 ATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-------PQVTFCVAS  138 (269)
T ss_dssp             CCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-------TTSEEEECC
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-------CCcEEEEcc
Confidence            45899999999999888887777889999999999999998874       136676665

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.37  E-value=1.5e-06  Score=79.95  Aligned_cols=48  Identities=13%  Similarity=0.147  Sum_probs=38.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCC-eeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~-~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ..+|||||||+|.+...+     +. +++|+|+|+.+++.|+++.  .     ++.++..|
T Consensus        37 ~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~--~-----~~~~~~~d   85 (211)
T 2gs9_A           37 GESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA--P-----EATWVRAW   85 (211)
T ss_dssp             CSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC--T-----TSEEECCC
T ss_pred             CCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC--C-----CcEEEEcc
Confidence            468999999999876554     66 9999999999999999886  2     36666555

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.36  E-value=6.9e-07  Score=88.23  Aligned_cols=45  Identities=11%  Similarity=-0.012  Sum_probs=39.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN  162 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N  162 (496)
                      ..+|||||||+|.++..|+.+  +.+|+|+|+|+.|++.|++|+..+
T Consensus        46 g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~   90 (261)
T 3iv6_A           46 GSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADR   90 (261)
T ss_dssp             TCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSS
T ss_pred             cCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhc
Confidence            458999999999998888754  679999999999999999998654

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.35  E-value=6.4e-07  Score=87.63  Aligned_cols=68  Identities=13%  Similarity=0.182  Sum_probs=49.8

Q ss_pred             CCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCC
Q 010968           86 PTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHI  165 (496)
Q Consensus        86 PrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L  165 (496)
                      |..|  ...+.||.+...           ...+|||||||+|.....|+..  ..+|+|+|+|+.+++.|++    +   
T Consensus        23 p~yp--~~l~~~l~~~~~-----------~~~~vLDvGcGtG~~~~~l~~~--~~~v~gvD~s~~ml~~a~~----~---   80 (257)
T 4hg2_A           23 PRYP--RALFRWLGEVAP-----------ARGDALDCGCGSGQASLGLAEF--FERVHAVDPGEAQIRQALR----H---   80 (257)
T ss_dssp             CCCC--HHHHHHHHHHSS-----------CSSEEEEESCTTTTTHHHHHTT--CSEEEEEESCHHHHHTCCC----C---
T ss_pred             CCcH--HHHHHHHHHhcC-----------CCCCEEEEcCCCCHHHHHHHHh--CCEEEEEeCcHHhhhhhhh----c---
Confidence            5556  456667666542           2358999999999887777643  5799999999999988753    2   


Q ss_pred             CCcEEEEEccC
Q 010968          166 SELIEIRKVDN  176 (496)
Q Consensus       166 ~~rI~~v~~d~  176 (496)
                       .+|+++.++.
T Consensus        81 -~~v~~~~~~~   90 (257)
T 4hg2_A           81 -PRVTYAVAPA   90 (257)
T ss_dssp             -TTEEEEECCT
T ss_pred             -CCceeehhhh
Confidence             3588887763

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.32  E-value=7.1e-06  Score=80.56  Aligned_cols=57  Identities=12%  Similarity=0.084  Sum_probs=47.7

Q ss_pred             CeEEEEcCch---hHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          117 VKGFDIGTGA---NCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       117 ~~vLDIGTGS---G~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      .+|||||||+   |.+...+....|+.+|+++|+|+.+++.|++++..+    .+++++.+|..
T Consensus        79 ~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~----~~v~~~~~D~~  138 (274)
T 2qe6_A           79 SQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD----PNTAVFTADVR  138 (274)
T ss_dssp             CEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC----TTEEEEECCTT
T ss_pred             CEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC----CCeEEEEeeCC
Confidence            5899999999   977655555568899999999999999999998543    47999988854

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.29  E-value=4.5e-07  Score=90.54  Aligned_cols=59  Identities=10%  Similarity=0.054  Sum_probs=50.3

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      .+.+|||||||.|.+++.++...+..+++|+|||+.+++.+++|+..|+ +.  .++...|.
T Consensus       132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g-~~--~~~~v~D~  190 (281)
T 3lcv_B          132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLN-VP--HRTNVADL  190 (281)
T ss_dssp             CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTT-CC--EEEEECCT
T ss_pred             CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcC-CC--ceEEEeee
Confidence            3679999999999998888777788999999999999999999999985 65  55555653

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.27  E-value=2.8e-06  Score=81.36  Aligned_cols=43  Identities=23%  Similarity=0.253  Sum_probs=37.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHH
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVK  160 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~  160 (496)
                      ..+|||||||+|.+...|+..  +.+++|+|+|+.+++.|+++..
T Consensus        55 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~   97 (260)
T 2avn_A           55 PCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV   97 (260)
T ss_dssp             CCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC
T ss_pred             CCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcC
Confidence            358999999999998777654  6799999999999999998754

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.26  E-value=9.7e-07  Score=99.77  Aligned_cols=77  Identities=12%  Similarity=0.114  Sum_probs=56.7

Q ss_pred             cHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCC-----C
Q 010968           91 RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNP-----H  164 (496)
Q Consensus        91 R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~-----~  164 (496)
                      ....+.++.+.+...         ...+|||||||+|.+...|+... +..+|+|+|+|+.+++.|++++....     +
T Consensus       706 ~eqRle~LLelL~~~---------~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~g  776 (950)
T 3htx_A          706 SKQRVEYALKHIRES---------SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACN  776 (950)
T ss_dssp             HHHHHHHHHHHHHHS---------CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSS
T ss_pred             HHHHHHHHHHHhccc---------CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcC
Confidence            344566666666531         34689999999999988887665 44799999999999999999765320     1


Q ss_pred             CCCcEEEEEccCC
Q 010968          165 ISELIEIRKVDNS  177 (496)
Q Consensus       165 L~~rI~~v~~d~~  177 (496)
                      + .+|+++.+|..
T Consensus       777 l-~nVefiqGDa~  788 (950)
T 3htx_A          777 V-KSATLYDGSIL  788 (950)
T ss_dssp             C-SEEEEEESCTT
T ss_pred             C-CceEEEECchH
Confidence            2 36899888753

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.23  E-value=3.7e-06  Score=84.51  Aligned_cols=57  Identities=12%  Similarity=0.031  Sum_probs=44.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...++.+.|+.+++++|++ .++.  +++++..+ +.++|+++.+|.
T Consensus       185 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~~-~~~~v~~~~~d~  241 (348)
T 3lst_A          185 TGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAPD-VAGRWKVVEGDF  241 (348)
T ss_dssp             SEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCGG-GTTSEEEEECCT
T ss_pred             CceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccccccC-CCCCeEEEecCC
Confidence            468999999999999999998999999999994 4444  44443332 567899988764

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.23  E-value=1.7e-06  Score=84.88  Aligned_cols=58  Identities=5%  Similarity=-0.319  Sum_probs=45.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC-CCC-CCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN-PHI-SELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N-~~L-~~rI~~v~~d  175 (496)
                      +.+|||||||+|.++..+++. + .+++++|+|+++++.|+++.... +.+ ..+++++.+|
T Consensus        73 ~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D  132 (262)
T 2cmg_A           73 LKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQL  132 (262)
T ss_dssp             CCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSG
T ss_pred             CCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEech
Confidence            468999999999998777766 6 89999999999999999876421 002 2478887665

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.22  E-value=4.5e-06  Score=89.90  Aligned_cols=58  Identities=12%  Similarity=0.052  Sum_probs=42.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-------------cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-------------LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-------------~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ..+|+|-+||||...+......             ....++|.|+++.++.+|+.|+-.++ .+ ...+..+|
T Consensus       218 ~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg-~~-~~~I~~~d  288 (530)
T 3ufb_A          218 GESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHG-LE-YPRIDPEN  288 (530)
T ss_dssp             TCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHT-CS-CCEEECSC
T ss_pred             CCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcC-Cc-cccccccc
Confidence            3589999999998865554332             23579999999999999999998875 43 23344444

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.21  E-value=6.2e-06  Score=82.30  Aligned_cols=59  Identities=12%  Similarity=-0.106  Sum_probs=41.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCC-----cEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISE-----LIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~-----rI~~v~~d~  176 (496)
                      ..+|||||||+|.....++. ...++|+|+|+|+.|++.|++.....+ +..     .++++..+.
T Consensus        49 ~~~VLDlGCG~G~~l~~~~~-~~~~~v~GiD~S~~~l~~A~~~~~~~~-~~~~~~~~~~~f~~~d~  112 (302)
T 2vdw_A           49 KRKVLAIDFGNGADLEKYFY-GEIALLVATDPDADAIARGNERYNKLN-SGIKTKYYKFDYIQETI  112 (302)
T ss_dssp             CCEEEETTCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHC-C----CCCEEEEEECCT
T ss_pred             CCeEEEEecCCcHhHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHhcc-ccccccccccchhhhhc
Confidence            46899999999954333333 345799999999999999999876542 221     256666653

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.19  E-value=1.3e-05  Score=73.88  Aligned_cols=106  Identities=15%  Similarity=0.222  Sum_probs=72.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||||||+|.++..+     ..+++|+|+++.           +      +.++.+|..+                 
T Consensus        68 ~~~vLDiG~G~G~~~~~l-----~~~v~~~D~s~~-----------~------~~~~~~d~~~-----------------  108 (215)
T 2zfu_A           68 SLVVADFGCGDCRLASSI-----RNPVHCFDLASL-----------D------PRVTVCDMAQ-----------------  108 (215)
T ss_dssp             TSCEEEETCTTCHHHHHC-----CSCEEEEESSCS-----------S------TTEEESCTTS-----------------
T ss_pred             CCeEEEECCcCCHHHHHh-----hccEEEEeCCCC-----------C------ceEEEecccc-----------------
Confidence            458999999999886655     368999999987           1      3445554321                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         +  .  ...++||+|+|+..+..                .+    
T Consensus       109 -----------------------------------~--~--~~~~~fD~v~~~~~l~~----------------~~----  129 (215)
T 2zfu_A          109 -----------------------------------V--P--LEDESVDVAVFCLSLMG----------------TN----  129 (215)
T ss_dssp             -----------------------------------C--S--CCTTCEEEEEEESCCCS----------------SC----
T ss_pred             -----------------------------------C--C--CCCCCEeEEEEehhccc----------------cC----
Confidence                                               0  0  02457999999876531                01    


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEE-eC-CcCcHHHHHHHHHHcCCeeEE
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSM-VG-RKSNLKFLISKLRKVGVTIVK  326 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsm-vG-k~s~l~~L~~~L~~~g~~~vk  326 (496)
                             ...++++...+++++|++... .. ...+...+.+.|++.|+..+.
T Consensus       130 -------~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~  175 (215)
T 2zfu_A          130 -------IRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVS  175 (215)
T ss_dssp             -------HHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEE
T ss_pred             -------HHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEE
Confidence                   245666667788888887553 32 224788999999999997665

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.15  E-value=5.1e-06  Score=82.02  Aligned_cols=56  Identities=14%  Similarity=-0.034  Sum_probs=46.3

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      .+.+|||||||+|.++..+.   +..+++|+|||+.+++.|++|+..++ .  ...+...|.
T Consensus       105 ~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g-~--~~~~~v~D~  160 (253)
T 3frh_A          105 TPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKD-W--DFTFALQDV  160 (253)
T ss_dssp             CCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTT-C--EEEEEECCT
T ss_pred             CCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcC-C--CceEEEeec
Confidence            46799999999998865554   88899999999999999999999884 3  466666663

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.11  E-value=2e-05  Score=79.90  Aligned_cols=52  Identities=19%  Similarity=0.022  Sum_probs=43.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.....|+.+.|+.+++++|+ +.+++.|++    .    .+|+++.+|.
T Consensus       210 ~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~----~----~~v~~~~~d~  261 (372)
T 1fp1_D          210 ISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP----L----SGIEHVGGDM  261 (372)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----C----TTEEEEECCT
T ss_pred             CCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh----c----CCCEEEeCCc
Confidence            46899999999999999998889999999999 999887754    1    2488887764

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.10  E-value=1.8e-05  Score=80.59  Aligned_cols=52  Identities=15%  Similarity=0.102  Sum_probs=44.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...|+.++|+.+++++|+ +.+++.|+++        .+|+++.+|.
T Consensus       204 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~  255 (368)
T 3reo_A          204 LTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF--------SGVEHLGGDM  255 (368)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC--------TTEEEEECCT
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc--------CCCEEEecCC
Confidence            46899999999999999999999999999999 8888776531        3689988874

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.10  E-value=1.9e-05  Score=79.34  Aligned_cols=52  Identities=12%  Similarity=0.038  Sum_probs=43.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...++.++|+.+++++|+ +.+++.|++    .    .+|+++.+|.
T Consensus       189 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~----~~v~~~~~d~  240 (352)
T 1fp2_A          189 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG----S----NNLTYVGGDM  240 (352)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----B----TTEEEEECCT
T ss_pred             CceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc----C----CCcEEEeccc
Confidence            46899999999999999998889999999999 999988764    1    2388887763

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.06  E-value=8.4e-07  Score=85.46  Aligned_cols=43  Identities=14%  Similarity=0.152  Sum_probs=36.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHH
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNV  159 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~  159 (496)
                      ..+|||||||+|.+...|+.. ...+|+|+|+|+.+++.|++|.
T Consensus        38 g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~   80 (232)
T 3opn_A           38 GKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSD   80 (232)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTC
T ss_pred             CCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhC
Confidence            458999999999998777765 3359999999999999987754

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.02  E-value=5.4e-05  Score=76.70  Aligned_cols=59  Identities=17%  Similarity=0.056  Sum_probs=51.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ..+++|||||+|.....|+.++|+.+++..|. |.+++.|++++...  ..+||+++.+|..
T Consensus       180 ~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~--~~~rv~~~~gD~~  238 (353)
T 4a6d_A          180 FPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQ--EEEQIDFQEGDFF  238 (353)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC----CCSEEEEESCTT
T ss_pred             CCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhc--ccCceeeecCccc
Confidence            35899999999999999999999999999998 88999999998754  4689999988754

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=97.96  E-value=5.3e-06  Score=82.18  Aligned_cols=49  Identities=14%  Similarity=0.144  Sum_probs=34.2

Q ss_pred             CCcHhH-HHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcH
Q 010968           89 PNRSNY-IHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (496)
Q Consensus        89 P~R~ny-i~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~  149 (496)
                      ..|..| +.|+.+.   ..+      ....+|||||||+|.....++..   .+|+|+|+++
T Consensus        64 ~sR~a~KL~~i~~~---~~~------~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~  113 (276)
T 2wa2_A           64 VSRGTAKLAWIDER---GGV------ELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT  113 (276)
T ss_dssp             -CHHHHHHHHHHHT---TSC------CCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC
T ss_pred             CchHHHHHHHHHHc---CCC------CCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch
Confidence            567666 5555543   111      12358999999999987776654   6899999998

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=97.95  E-value=8.8e-06  Score=80.06  Aligned_cols=49  Identities=12%  Similarity=0.163  Sum_probs=35.1

Q ss_pred             CCcHhH-HHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcH
Q 010968           89 PNRSNY-IHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (496)
Q Consensus        89 P~R~ny-i~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~  149 (496)
                      ..|..| +.|+.+.   ..+      ....+|||||||+|.....++..   .+|+|+|+++
T Consensus        56 ~sR~a~KL~~i~~~---~~~------~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~  105 (265)
T 2oxt_A           56 VSRGTAKLAWMEER---GYV------ELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT  105 (265)
T ss_dssp             SSTHHHHHHHHHHH---TSC------CCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC
T ss_pred             cchHHHHHHHHHHc---CCC------CCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch
Confidence            567777 4555554   111      12358999999999987666654   6899999998

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=97.92  E-value=5.2e-05  Score=76.31  Aligned_cols=52  Identities=15%  Similarity=0.051  Sum_probs=42.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...++.+.|+.+++++|+ +.+++.|++    .    .+|+++.+|.
T Consensus       194 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~----~~v~~~~~d~  245 (358)
T 1zg3_A          194 LESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG----N----ENLNFVGGDM  245 (358)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC----C----SSEEEEECCT
T ss_pred             CCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc----C----CCcEEEeCcc
Confidence            35899999999999999998889999999999 788876653    1    2388877763

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=97.90  E-value=1.2e-05  Score=80.68  Aligned_cols=41  Identities=15%  Similarity=0.182  Sum_probs=33.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHH
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK  157 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~  157 (496)
                      ..++||||||+|.....|+.. ...+|+|+|+++.+|++|.+
T Consensus        86 g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r  126 (291)
T 3hp7_A           86 DMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLR  126 (291)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHH
T ss_pred             ccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHH
Confidence            458999999999887666553 44599999999999998654

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=97.88  E-value=6.7e-05  Score=76.31  Aligned_cols=53  Identities=15%  Similarity=-0.010  Sum_probs=44.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ..+|||||||+|.+...|+.++|+.+++++|+ +.+++.|+++        .+|+++.+|..
T Consensus       202 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~  254 (364)
T 3p9c_A          202 LGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF--------PGVTHVGGDMF  254 (364)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC--------TTEEEEECCTT
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc--------CCeEEEeCCcC
Confidence            46899999999999999999999999999999 8888776531        46999888743

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=97.85  E-value=3.7e-05  Score=84.79  Aligned_cols=61  Identities=7%  Similarity=-0.045  Sum_probs=46.2

Q ss_pred             CCCeEEEEcCchhHHHHH---HHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          115 DKVKGFDIGTGANCIYPL---LGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~il---La~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      +...|+|+|||+|.+...   .+++.. ..+|+|||-++. ..+|+++++.|+ ++++|+++++|..
T Consensus       357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~~N~-~~dkVtVI~gd~e  421 (637)
T 4gqb_A          357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQFEE-WGSQVTVVSSDMR  421 (637)
T ss_dssp             CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHHHHT-TGGGEEEEESCTT
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHHhcc-CCCeEEEEeCcce
Confidence            345799999999977322   222221 247899999985 568999999995 9999999999854

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=97.49  E-value=0.00051  Score=61.41  Aligned_cols=107  Identities=7%  Similarity=-0.095  Sum_probs=70.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||||||.                +++|+|+.+++.|+++...      +++++.+|..+                 
T Consensus        13 g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~------~~~~~~~d~~~-----------------   53 (176)
T 2ld4_A           13 GQFVAVVWDKS----------------SPVEALKGLVDKLQALTGN------EGRVSVENIKQ-----------------   53 (176)
T ss_dssp             TSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTT------TSEEEEEEGGG-----------------
T ss_pred             CCEEEEecCCc----------------eeeeCCHHHHHHHHHhccc------CcEEEEechhc-----------------
Confidence            45899999996                3499999999999987532      27777776321                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                        +                               + +.+.  .+++||+|+|+=-+..-              ..+    
T Consensus        54 --~-------------------------------~-~~~~--~~~~fD~V~~~~~l~~~--------------~~~----   79 (176)
T 2ld4_A           54 --L-------------------------------L-QSAH--KESSFDIILSGLVPGST--------------TLH----   79 (176)
T ss_dssp             --G-------------------------------G-GGCC--CSSCEEEEEECCSTTCC--------------CCC----
T ss_pred             --C-------------------------------c-cccC--CCCCEeEEEECChhhhc--------------ccC----
Confidence              0                               0 0000  24689999997322110              011    


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeCC---------cCcHHHHHHHHHHcCC
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGR---------KSNLKFLISKLRKVGV  322 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk---------~s~l~~L~~~L~~~g~  322 (496)
                             ..+++++..+.++++|++......         ......+.+.|++.|+
T Consensus        80 -------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  128 (176)
T 2ld4_A           80 -------SAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL  128 (176)
T ss_dssp             -------CHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred             -------HHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence                   145677777889999988663210         1137889999999999

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.44  E-value=9.1e-05  Score=68.00  Aligned_cols=37  Identities=11%  Similarity=0.113  Sum_probs=30.7

Q ss_pred             CCeEEEEcCchh-HHHHHHHHHhcCCeeEEecCcHHHHH
Q 010968          116 KVKGFDIGTGAN-CIYPLLGASLLGWSFVGSDMTDVALE  153 (496)
Q Consensus       116 ~~~vLDIGTGSG-~I~ilLa~~~~~~~v~avDIs~~AL~  153 (496)
                      +.++||||||+| -++..|+.. .+..|+|+||++.|++
T Consensus        36 ~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~   73 (153)
T 2k4m_A           36 GTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG   73 (153)
T ss_dssp             SSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT
T ss_pred             CCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc
Confidence            359999999999 588877643 5789999999997755

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=97.37  E-value=8.9e-05  Score=74.30  Aligned_cols=29  Identities=17%  Similarity=0.040  Sum_probs=24.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDM  147 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDI  147 (496)
                      ..+|||||||+|.....++..   .+|+|+|+
T Consensus        83 g~~VLDlGcG~G~~s~~la~~---~~V~gvD~  111 (305)
T 2p41_A           83 EGKVVDLGCGRGGWSYYCGGL---KNVREVKG  111 (305)
T ss_dssp             CEEEEEETCTTSHHHHHHHTS---TTEEEEEE
T ss_pred             CCEEEEEcCCCCHHHHHHHhc---CCEEEEec
Confidence            358999999999987777654   48999999

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=97.36  E-value=0.00031  Score=70.20  Aligned_cols=59  Identities=19%  Similarity=0.131  Sum_probs=46.5

Q ss_pred             CeEEEEcCch---hHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          117 VKGFDIGTGA---NCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       117 ~~vLDIGTGS---G~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      .++||||||.   |.+..++....|+++|+++|+|+.+|+.|+..+..++  ..+++++.+|..
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~--~~~~~~v~aD~~  141 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP--EGRTAYVEADML  141 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS--SSEEEEEECCTT
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC--CCcEEEEEeccc
Confidence            4899999996   4443333344689999999999999999999987542  357999999865

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=97.35  E-value=8.5e-05  Score=78.12  Aligned_cols=52  Identities=19%  Similarity=0.143  Sum_probs=38.6

Q ss_pred             CCCeEEEEcCc------hhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          115 DKVKGFDIGTG------ANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       115 ~~~~vLDIGTG------SG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ++.+|||||||      +|...+.++.++ |+.+|+|+|+|+.+.        ..   ..+|+++.+|..
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~~---~~rI~fv~GDa~  274 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------VD---ELRIRTIQGDQN  274 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------GC---BTTEEEEECCTT
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------hc---CCCcEEEEeccc
Confidence            35799999999      555555666554 789999999999872        11   257999998853

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.12  E-value=0.0012  Score=65.41  Aligned_cols=45  Identities=11%  Similarity=0.043  Sum_probs=38.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN  162 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N  162 (496)
                      ...|||++||||-+++.++  ..+.+++|+|+++++++.|++|++..
T Consensus       236 ~~~vlD~f~GsGt~~~~a~--~~g~~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          236 GDVVLDPFAGTGTTLIAAA--RWGRRALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             TCEEEETTCTTTHHHHHHH--HTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHH--HcCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            3589999999998865544  35789999999999999999999764

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.08  E-value=0.002  Score=61.38  Aligned_cols=72  Identities=11%  Similarity=0.082  Sum_probs=54.9

Q ss_pred             cHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCC--CCc
Q 010968           91 RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHI--SEL  168 (496)
Q Consensus        91 R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L--~~r  168 (496)
                      ..+-..++...+..           ..+||+||||.+.+  .+|. .++.+|+.+|+|++..+.|++|+++++ +  .++
T Consensus        17 ~~~~~~~L~~~l~~-----------a~~VLEiGtGySTl--~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g-~~~~~~   81 (202)
T 3cvo_A           17 PPAEAEALRMAYEE-----------AEVILEYGSGGSTV--VAAE-LPGKHVTSVESDRAWARMMKAWLAANP-PAEGTE   81 (202)
T ss_dssp             CHHHHHHHHHHHHH-----------CSEEEEESCSHHHH--HHHT-STTCEEEEEESCHHHHHHHHHHHHHSC-CCTTCE
T ss_pred             CHHHHHHHHHHhhC-----------CCEEEEECchHHHH--HHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcC-CCCCCc
Confidence            35555666555432           35899999986544  3343 447899999999999999999999995 7  789


Q ss_pred             EEEEEccCC
Q 010968          169 IEIRKVDNS  177 (496)
Q Consensus       169 I~~v~~d~~  177 (496)
                      |+++.++..
T Consensus        82 I~~~~gda~   90 (202)
T 3cvo_A           82 VNIVWTDIG   90 (202)
T ss_dssp             EEEEECCCS
T ss_pred             eEEEEeCch
Confidence            999998853

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.06  E-value=0.00036  Score=77.71  Aligned_cols=60  Identities=13%  Similarity=-0.017  Sum_probs=44.3

Q ss_pred             CCeEEEEcCchhHHHHH--HHHH-h----------cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPL--LGAS-L----------LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~il--La~~-~----------~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ...|||+|||+|.+...  -|.+ .          ...+|+|||.++.|...+++... |+ ++++|+++++|..
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng-~~d~VtVI~gd~e  482 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RT-WKRRVTIIESDMR  482 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HT-TTTCSEEEESCGG
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cC-CCCeEEEEeCchh
Confidence            45799999999988532  2222 1          23499999999988876666554 64 9999999999753

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=96.92  E-value=0.001  Score=66.71  Aligned_cols=53  Identities=13%  Similarity=-0.012  Sum_probs=45.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ...+||.+||.|.-...|+.+  +.+|+|+|+|++|++.|++ ++.     +++++++++.
T Consensus        23 gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~~-----~rv~lv~~~f   75 (285)
T 1wg8_A           23 GGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LHL-----PGLTVVQGNF   75 (285)
T ss_dssp             TCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TCC-----TTEEEEESCG
T ss_pred             CCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hcc-----CCEEEEECCc
Confidence            358999999999998888776  7799999999999999998 532     4799998863

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=96.82  E-value=0.0026  Score=65.50  Aligned_cols=145  Identities=8%  Similarity=0.026  Sum_probs=90.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCC-----CcEEEEEccCCCCCCcccccccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHIS-----ELIEIRKVDNSESTPSIQESLTGK  190 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~-----~rI~~v~~d~~~~~p~~~~~~~~~  190 (496)
                      ..+|||+|+|.|.=...|+....+..++|.|+++.-++..++|+++.+ ..     ..|.+...|..             
T Consensus       149 g~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~-~~~~~~~~~v~v~~~D~~-------------  214 (359)
T 4fzv_A          149 GDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYV-PEEIRDGNQVRVTSWDGR-------------  214 (359)
T ss_dssp             TEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHS-CTTTTTSSSEEEECCCGG-------------
T ss_pred             CCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhh-hhhhccCCceEEEeCchh-------------
Confidence            358999999999887777766555689999999999999999998863 32     34555444321             


Q ss_pred             ccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCc-ccccCCCCcccCCC
Q 010968          191 SVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESM-EEAGLNPKTSCGGT  269 (496)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~-eea~~eP~~al~G~  269 (496)
                                                              -+...  ..+.||.|++.+|=-.+. .....+|..-..-.
T Consensus       215 ----------------------------------------~~~~~--~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~  252 (359)
T 4fzv_A          215 ----------------------------------------KWGEL--EGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSR  252 (359)
T ss_dssp             ----------------------------------------GHHHH--STTCEEEEEEECCCCCHHHHTTCCTTCTTSGGG
T ss_pred             ----------------------------------------hcchh--ccccCCEEEECCccCCCCCcccccChhhhhhCC
Confidence                                                    01111  246899999999953210 11122333221111


Q ss_pred             CCcccccCchH-HHHHHHHHHHHHhhcCCeEE---EEEeCCcCcHHHHHHHHHHc
Q 010968          270 PEEMVCSGGER-AFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKV  320 (496)
Q Consensus       270 ~~Emv~~GGel-~FI~riI~eS~~ll~~~gwf---tsmvGk~s~l~~L~~~L~~~  320 (496)
                      ..+.    -.+ .+=.+|+..+..+++++|.+   |+-+....+-.-|...|+++
T Consensus       253 ~~~~----~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE~vV~~~L~~~  303 (359)
T 4fzv_A          253 KKER----QILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELL  303 (359)
T ss_dssp             HHHH----HTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTHHHHHHHHHHH
T ss_pred             HHHH----HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCHHHHHHHHHhC
Confidence            1100    011 23356888888988888764   45566566766666666653

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=96.71  E-value=0.0018  Score=64.10  Aligned_cols=82  Identities=13%  Similarity=0.156  Sum_probs=50.3

Q ss_pred             CCcEEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcC----------
Q 010968          239 GEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKS----------  308 (496)
Q Consensus       239 ~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s----------  308 (496)
                      +++||+|+|||||+...+.... +.. . ++   +..-...+.++..++.++..+++++|++.+++|...          
T Consensus        38 ~~s~DlIvtdPPY~~~~~y~~~-~~~-~-~~---~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~~~~~~~~g~~~  111 (297)
T 2zig_A           38 EASVHLVVTSPPYWTLKRYEDT-PGQ-L-GH---IEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDVAVARRRFGRHL  111 (297)
T ss_dssp             TTCEEEEEECCCCCCCC--------C-C-HH---HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCEEEECC----EE
T ss_pred             CCceeEEEECCCCCCccccCCC-hhh-h-cc---cccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCCccccccCCccc
Confidence            4689999999999865321111 100 0 00   000000244567889999999999999999988321          


Q ss_pred             ---cHHHHHHHHHHcCCeeEE
Q 010968          309 ---NLKFLISKLRKVGVTIVK  326 (496)
Q Consensus       309 ---~l~~L~~~L~~~g~~~vk  326 (496)
                         ....+...+++.|+....
T Consensus       112 ~~~~~~~l~~~~~~~Gf~~~~  132 (297)
T 2zig_A          112 VFPLHADIQVRCRKLGFDNLN  132 (297)
T ss_dssp             EECHHHHHHHHHHHTTCEEEE
T ss_pred             ccccHHHHHHHHHHcCCeeec
Confidence               124677888999985443

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=96.66  E-value=0.043  Score=55.14  Aligned_cols=63  Identities=10%  Similarity=0.042  Sum_probs=48.3

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHH-CCC-C-CCcEEEEEccCC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS-NPH-I-SELIEIRKVDNS  177 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~-N~~-L-~~rI~~v~~d~~  177 (496)
                      ++.+||=||-|.|.++-.+++..+..+++.+|||++.+++|++-... +.+ + +.|++++.+|..
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~  148 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGV  148 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTT
T ss_pred             CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHH
Confidence            46799999999999877776554557999999999999999986522 111 2 358999988854

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=96.28  E-value=0.0061  Score=61.05  Aligned_cols=54  Identities=6%  Similarity=-0.081  Sum_probs=44.7

Q ss_pred             CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+||+=+|||.|++-+.+  ..-+++.+|.++++++.-++|++.    ..++++++.|.
T Consensus        93 ~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~----~~~~~V~~~D~  146 (283)
T 2oo3_A           93 NSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHF----NKKVYVNHTDG  146 (283)
T ss_dssp             SSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCT----TSCEEEECSCH
T ss_pred             CCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCc----CCcEEEEeCcH
Confidence            3589999999999888765  457999999999999999999864    35788887763

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=96.18  E-value=0.026  Score=55.18  Aligned_cols=47  Identities=17%  Similarity=0.157  Sum_probs=34.2

Q ss_pred             CCCeEEEEcCchhHHHHHHHHH-------hcC-----CeeEEecCcH---HHHH-----------HHHHHHHH
Q 010968          115 DKVKGFDIGTGANCIYPLLGAS-------LLG-----WSFVGSDMTD---VALE-----------WAEKNVKS  161 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~-------~~~-----~~v~avDIs~---~AL~-----------~A~~N~~~  161 (496)
                      ...+|||||+|+|.-.+.++..       .|+     .+++++|..|   +.++           +|+++++.
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~  132 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQ  132 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHh
Confidence            3468999999999877665543       342     5899999886   4333           77788765

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=96.14  E-value=0.012  Score=57.08  Aligned_cols=46  Identities=20%  Similarity=0.161  Sum_probs=37.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP  163 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~  163 (496)
                      ...|||..||||-.++..  ...+.+++|+|+++.+++.|++|++.++
T Consensus       213 ~~~vlD~f~GsGtt~~~a--~~~gr~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          213 NDLVLDCFMGSGTTAIVA--KKLGRNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             TCEEEESSCTTCHHHHHH--HHTTCEEEEEESCHHHHHHHHHHHHC--
T ss_pred             CCEEEECCCCCCHHHHHH--HHcCCeEEEEeCCHHHHHHHHHHHHhcc
Confidence            458999999999885443  3457899999999999999999998763

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=95.47  E-value=0.055  Score=56.27  Aligned_cols=136  Identities=14%  Similarity=0.175  Sum_probs=83.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC-C-CC----CCcEEEEEccCCCCCCcccccccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN-P-HI----SELIEIRKVDNSESTPSIQESLTG  189 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N-~-~L----~~rI~~v~~d~~~~~p~~~~~~~~  189 (496)
                      +.+||=||-|.|.++-.+.+ .+..+++.||||++.+++|++-.... + .+    ..+++++..|...           
T Consensus       206 pkrVLIIGgGdG~~~revlk-h~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~-----------  273 (381)
T 3c6k_A          206 GKDVLILGGGDGGILCEIVK-LKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIP-----------  273 (381)
T ss_dssp             TCEEEEEECTTCHHHHHHHT-TCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHH-----------
T ss_pred             CCeEEEECCCcHHHHHHHHh-cCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHH-----------
Confidence            46899999999998777664 45578999999999999999854210 0 01    2457777766321           


Q ss_pred             CccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCC
Q 010968          190 KSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGT  269 (496)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~  269 (496)
                                                               ++....+..++||+||.-.+=...    ...|.     +
T Consensus       274 -----------------------------------------fl~~~~~~~~~yDvIIvDl~D~~~----s~~p~-----g  303 (381)
T 3c6k_A          274 -----------------------------------------VLKRYAKEGREFDYVINDLTAVPI----STSPE-----E  303 (381)
T ss_dssp             -----------------------------------------HHHHHHHHTCCEEEEEEECCSSCC----CCC--------
T ss_pred             -----------------------------------------HHHhhhhccCceeEEEECCCCCcc----cCccc-----C
Confidence                                                     121111124679999987531110    00010     1


Q ss_pred             CCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcC---cHHHHHHHHHHc
Q 010968          270 PEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKS---NLKFLISKLRKV  320 (496)
Q Consensus       270 ~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s---~l~~L~~~L~~~  320 (496)
                      ..       ...|.+.+.+.....|+++|.+.+--+-..   .+..+.+.|++.
T Consensus       304 ~a-------~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~tl~~v  350 (381)
T 3c6k_A          304 DS-------TWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRL  350 (381)
T ss_dssp             -C-------HHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHHTTS
T ss_pred             cc-------hHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHHHHHh
Confidence            11       456777788888888999999876544222   234455556554

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=95.21  E-value=0.048  Score=56.00  Aligned_cols=78  Identities=13%  Similarity=0.106  Sum_probs=54.5

Q ss_pred             HhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 010968           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI  171 (496)
Q Consensus        92 ~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~  171 (496)
                      .+.+.-|.+.+...  + ...+.....|||||.|.|.+-..|+.+....+++++|+|++.+..-++.. ..    +++++
T Consensus        38 ~~i~~~Iv~~~~l~--~-~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~~----~~l~i  109 (353)
T 1i4w_A           38 PTVYNKIFDKLDLT--K-TYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-EG----SPLQI  109 (353)
T ss_dssp             HHHHHHHHHHHCGG--G-TCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-TT----SSCEE
T ss_pred             HHHHHHHHHhccCC--c-ccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-cC----CCEEE
Confidence            44555566665421  0 00001246899999999999888876554568999999999998887766 22    47899


Q ss_pred             EEccCC
Q 010968          172 RKVDNS  177 (496)
Q Consensus       172 v~~d~~  177 (496)
                      +.+|..
T Consensus       110 i~~D~l  115 (353)
T 1i4w_A          110 LKRDPY  115 (353)
T ss_dssp             ECSCTT
T ss_pred             EECCcc
Confidence            999864

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=94.00  E-value=0.068  Score=53.24  Aligned_cols=78  Identities=14%  Similarity=0.010  Sum_probs=55.1

Q ss_pred             CcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHh-----cCCeeEEecCcH---------------
Q 010968           90 NRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL-----LGWSFVGSDMTD---------------  149 (496)
Q Consensus        90 ~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~-----~~~~v~avDIs~---------------  149 (496)
                      .|...+..+...+...        ..+..||++||..|.=++.++..+     ++.+++++|..+               
T Consensus        89 ~r~~~L~~l~~~v~~~--------~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~  160 (282)
T 2wk1_A           89 KRLENIRQCVEDVIGN--------NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRK  160 (282)
T ss_dssp             HHHHHHHHHHHHHHHT--------TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHhc--------CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccc
Confidence            4555555554444321        245689999999997666666544     367899999631               


Q ss_pred             -----------HHHHHHHHHHHHCCCC-CCcEEEEEccC
Q 010968          150 -----------VALEWAEKNVKSNPHI-SELIEIRKVDN  176 (496)
Q Consensus       150 -----------~AL~~A~~N~~~N~~L-~~rI~~v~~d~  176 (496)
                                 ..++.|++|+++.+ + .++|++++++.
T Consensus       161 ~~~~~~~~~~~~~~~~ar~n~~~~g-l~~~~I~li~Gda  198 (282)
T 2wk1_A          161 MALHRRNSVLAVSEEEVRRNFRNYD-LLDEQVRFLPGWF  198 (282)
T ss_dssp             HCGGGGHHHHCCCHHHHHHHHHHTT-CCSTTEEEEESCH
T ss_pred             cccccccccchhHHHHHHHHHHHcC-CCcCceEEEEeCH
Confidence                       14788999999986 7 48999999974

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=93.78  E-value=0.097  Score=52.85  Aligned_cols=43  Identities=19%  Similarity=0.091  Sum_probs=34.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCe-eEEecCcHHHHHHHHHHHH
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWS-FVGSDMTDVALEWAEKNVK  160 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~-v~avDIs~~AL~~A~~N~~  160 (496)
                      +.+++|+.||+|.+...+  +..+++ +.++|+++.|++..+.|..
T Consensus        11 ~~~~~dLFaG~Gg~~~g~--~~aG~~~v~~~e~d~~a~~t~~~N~~   54 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLAL--ESCGAECVYSNEWDKYAQEVYEMNFG   54 (327)
T ss_dssp             TCEEEEETCTTTHHHHHH--HHTTCEEEEEECCCHHHHHHHHHHHS
T ss_pred             CCcEEEECCCcCHHHHHH--HHCCCeEEEEEeCCHHHHHHHHHHcC
Confidence            478999999999875444  445664 7889999999999999974

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=93.45  E-value=0.064  Score=55.23  Aligned_cols=41  Identities=12%  Similarity=0.133  Sum_probs=33.0

Q ss_pred             CeEEEEcCchhHHHHHHHHHhcCCe-eEEecCcHHHHHHHHHHH
Q 010968          117 VKGFDIGTGANCIYPLLGASLLGWS-FVGSDMTDVALEWAEKNV  159 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~~~~-v~avDIs~~AL~~A~~N~  159 (496)
                      .+++||.||+|.+..-+  +..+++ +.|+|+++.|++..+.|.
T Consensus         3 ~~vidLFsG~GGlslG~--~~aG~~~v~avE~d~~a~~t~~~N~   44 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGA--ARAGFDVKMAVEIDQHAINTHAINF   44 (376)
T ss_dssp             CEEEEETCTTSHHHHHH--HHHTCEEEEEECSCHHHHHHHHHHC
T ss_pred             CeEEEEccCcCHHHHHH--HHCCCcEEEEEeCCHHHHHHHHHhC
Confidence            57999999999885444  445665 569999999999998885

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=93.26  E-value=0.18  Score=52.20  Aligned_cols=61  Identities=11%  Similarity=0.027  Sum_probs=48.4

Q ss_pred             CCCeEEEEcCchhHHHHHHH-HHhcC-CeeEEecCcHHHHHHHHHHHHH--CCCCCCcEEEEEcc
Q 010968          115 DKVKGFDIGTGANCIYPLLG-ASLLG-WSFVGSDMTDVALEWAEKNVKS--NPHISELIEIRKVD  175 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa-~~~~~-~~v~avDIs~~AL~~A~~N~~~--N~~L~~rI~~v~~d  175 (496)
                      ....++|+|++.|.....++ +..+. .+|+|+|-+|.+++..++|++.  |+++..+|+++..-
T Consensus       226 ~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~a  290 (409)
T 2py6_A          226 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCG  290 (409)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSE
T ss_pred             CCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeE
Confidence            34689999999998877666 34444 6999999999999999999998  54243678887654

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=91.88  E-value=0.33  Score=48.54  Aligned_cols=74  Identities=14%  Similarity=0.195  Sum_probs=50.2

Q ss_pred             CCcEEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCc--C--------
Q 010968          239 GEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRK--S--------  308 (496)
Q Consensus       239 ~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~--s--------  308 (496)
                      +++||+|+++|||...... .+.       .   + ....-+.++..++.++..+++++|.+.+.++..  .        
T Consensus        31 ~~svDlI~tDPPY~~~~~~-~y~-------~---~-~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~~~~~~~   98 (323)
T 1boo_A           31 EESISLVMTSPPFALQRKK-EYG-------N---L-EQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVPARSIY   98 (323)
T ss_dssp             SSCEEEEEECCCCSSSCSC-SSC-------S---C-HHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTEEEECCH
T ss_pred             CCCeeEEEECCCCCCCccc-ccC-------C---c-CHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCCcccccc
Confidence            4689999999999764321 110       0   0 000124577888899889999999998988843  1        


Q ss_pred             cHHHHHHHHHHcCCee
Q 010968          309 NLKFLISKLRKVGVTI  324 (496)
Q Consensus       309 ~l~~L~~~L~~~g~~~  324 (496)
                      .+..+...+++.|+..
T Consensus        99 ~~~~i~~~~~~~Gf~~  114 (323)
T 1boo_A           99 NFRVLIRMIDEVGFFL  114 (323)
T ss_dssp             HHHHHHHHHHTTCCEE
T ss_pred             hHHHHHHHHHhCCCEE
Confidence            3566777778888753

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=89.96  E-value=0.33  Score=49.08  Aligned_cols=45  Identities=18%  Similarity=0.141  Sum_probs=35.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCC-eeEEecCcHHHHHHHHHHHH
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVK  160 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~-~v~avDIs~~AL~~A~~N~~  160 (496)
                      +.+++|+.||+|.+...+...-..+ .+.++|+++.|++..+.|..
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~   47 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP   47 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc
Confidence            3589999999998866554432113 58999999999999999964

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=89.64  E-value=0.33  Score=49.89  Aligned_cols=55  Identities=15%  Similarity=-0.048  Sum_probs=44.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ...++|..+|.|.-...|+... ++.+|+|+|+|++|++.|+ ++     ..+++++++++.
T Consensus        58 ggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL-----~~~Rv~lv~~nF  113 (347)
T 3tka_A           58 DGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI-----DDPRFSIIHGPF  113 (347)
T ss_dssp             TCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC-----CCTTEEEEESCG
T ss_pred             CCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh-----cCCcEEEEeCCH
Confidence            3589999999999888887765 5689999999999999984 32     236899998863

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=88.96  E-value=1  Score=43.32  Aligned_cols=72  Identities=17%  Similarity=0.156  Sum_probs=48.2

Q ss_pred             CCcEEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHH
Q 010968          239 GEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLR  318 (496)
Q Consensus       239 ~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~  318 (496)
                      +++||+|++.|||......-+     .+. +.+      .=+.|+..++++...+++++|.+.++++ ......+...+.
T Consensus        21 ~~~vdlI~~DPPY~~~~~~~d-----~~~-~~~------~y~~~~~~~l~~~~~~Lk~~g~i~v~~~-d~~~~~~~~~~~   87 (260)
T 1g60_A           21 NKSVQLAVIDPPYNLSKADWD-----SFD-SHN------EFLAFTYRWIDKVLDKLDKDGSLYIFNT-PFNCAFICQYLV   87 (260)
T ss_dssp             TTCEEEEEECCCCSSCSSGGG-----CCS-SHH------HHHHHHHHHHHHHHHHEEEEEEEEEEEC-HHHHHHHHHHHH
T ss_pred             ccccCEEEECCCCCCCccccc-----ccC-CHH------HHHHHHHHHHHHHHHHhcCCeEEEEEcC-cHHHHHHHHHHH
Confidence            468999999999975421100     000 111      0246788888888889999999888876 444556677788


Q ss_pred             HcCCe
Q 010968          319 KVGVT  323 (496)
Q Consensus       319 ~~g~~  323 (496)
                      +.|+.
T Consensus        88 ~~gf~   92 (260)
T 1g60_A           88 SKGMI   92 (260)
T ss_dssp             HTTCE
T ss_pred             hhccc
Confidence            88874

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=88.44  E-value=1.5  Score=45.56  Aligned_cols=50  Identities=12%  Similarity=0.044  Sum_probs=34.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..++||||+..|.-.-.|+.+  +.+|+|||+.+-.     ..+..+    .+|+++..|.
T Consensus       212 G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~-----~~l~~~----~~V~~~~~d~  261 (375)
T 4auk_A          212 GMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMA-----QSLMDT----GQVTWLREDG  261 (375)
T ss_dssp             TCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCC-----HHHHTT----TCEEEECSCT
T ss_pred             CCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcC-----hhhccC----CCeEEEeCcc
Confidence            468999999999876555543  6799999986421     122223    3688887764

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=87.20  E-value=0.7  Score=46.66  Aligned_cols=44  Identities=16%  Similarity=0.153  Sum_probs=34.4

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcC--Ce-e-EEecCcHHHHHHHHHHHH
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLG--WS-F-VGSDMTDVALEWAEKNVK  160 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~--~~-v-~avDIs~~AL~~A~~N~~  160 (496)
                      ++.+++|+.||.|.+...+  +..+  ++ + .|+|+++.|++.-+.|..
T Consensus         9 ~~~~vidLFaG~GG~~~G~--~~aG~~~~~v~~a~e~d~~a~~ty~~N~~   56 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSY--ERSSININATFIPFDINEIANKIYSKNFK   56 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHH--HHSSCCCCEEEEEECCCHHHHHHHHHHHC
T ss_pred             CCCEEEEECCChhHHHHHH--HHcCCCceEEEEEEECCHHHHHHHHHHCC
Confidence            4679999999999875444  4444  35 4 599999999999999863

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=83.73  E-value=1.4  Score=43.79  Aligned_cols=43  Identities=12%  Similarity=0.176  Sum_probs=33.5

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCe---eEEecCcHHHHHHHHHHH
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWS---FVGSDMTDVALEWAEKNV  159 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~---v~avDIs~~AL~~A~~N~  159 (496)
                      .+.+++||-||.|.+...+  +..+.+   +.++|+++.|++.-+.|.
T Consensus        15 ~~~~vidLFaG~GG~~~g~--~~aG~~~~~v~a~E~d~~a~~ty~~N~   60 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVL--KDLGIQVDRYIASEVCEDSITVGMVRH   60 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHH--HHTTBCEEEEEEECCCHHHHHHHHHHT
T ss_pred             CCCEEEEeCcCccHHHHHH--HHCCCccceEEEEECCHHHHHHHHHhC
Confidence            4579999999999885444  444544   589999999998887774

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=83.51  E-value=1.4  Score=43.95  Aligned_cols=45  Identities=18%  Similarity=0.028  Sum_probs=37.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN  162 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N  162 (496)
                      ...|||--||||-.+  +++...+.+++|+|+++.++++|+++++..
T Consensus       253 ~~~VlDpF~GsGtt~--~aa~~~gr~~ig~e~~~~~~~~~~~r~~~~  297 (323)
T 1boo_A          253 DDLVVDIFGGSNTTG--LVAERESRKWISFEMKPEYVAASAFRFLDN  297 (323)
T ss_dssp             TCEEEETTCTTCHHH--HHHHHTTCEEEEEESCHHHHHHHHGGGSCS
T ss_pred             CCEEEECCCCCCHHH--HHHHHcCCCEEEEeCCHHHHHHHHHHHHhc
Confidence            458999999999874  344455789999999999999999998754

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=81.06  E-value=3.9  Score=42.34  Aligned_cols=21  Identities=14%  Similarity=-0.168  Sum_probs=16.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHH
Q 010968          116 KVKGFDIGTGANCIYPLLGAS  136 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~  136 (496)
                      ..+|+|+||++|...+.+...
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~   73 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRD   73 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHH
T ss_pred             ceEEEecCCCCCchHHHHHHH
Confidence            578999999999877666543

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=81.05  E-value=1.7  Score=43.82  Aligned_cols=45  Identities=18%  Similarity=0.069  Sum_probs=33.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCe-eEEecCcHHHHHHHHHHHH
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWS-FVGSDMTDVALEWAEKNVK  160 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~-v~avDIs~~AL~~A~~N~~  160 (496)
                      +.+++|+.||.|.+...+...-.+++ +.|+|+++.|++.-+.|..
T Consensus         3 ~~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~   48 (333)
T 4h0n_A            3 SHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP   48 (333)
T ss_dssp             CEEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT
T ss_pred             CCEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC
Confidence            46899999999988554433222234 6899999999998888853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	496
d2h00a1	250	c.66.1.54 (A:5-254) Methyltransferase 10 domain co	1e-54

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  181 bits (461), Expect = 1e-54
 Identities = 103/301 (34%), Positives = 143/301 (47%), Gaps = 64/301 (21%)

Query: 53  IDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSR 112
           +++ D  A R LT  LL  D GL+  IP  +L PTVP R NYIHW+EDL+          
Sbjct: 3   LNFKDPEAVRALTCTLLREDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSD---- 58

Query: 113 NGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIR 172
                +G DIGTGA+CIYPLLGA+L GW F+ +++ D+   +A+KNV+ N     +  ++
Sbjct: 59  KSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVK 118

Query: 173 KVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVL 232
               +    +++E                                               
Sbjct: 119 VPQKTLLMDALKEESEII------------------------------------------ 136

Query: 233 VGVVRDGEQFDFCICNPPFFESMEEAGL---------NPKTSCGGTPEEMVCSGGERAFI 283
                    +DFC+CNPPFF +  EA            P +   G   E++  GGE  F+
Sbjct: 137 ---------YDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 187

Query: 284 TRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWS 343
            RII DS+ LK+  RWY+ M+G+K +L  L  +LR  GV  V  TEF QG+T RW LAWS
Sbjct: 188 KRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEFCQGRTMRWALAWS 247

Query: 344 F 344
           F
Sbjct: 248 F 248

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	496
d2h00a1	250	Methyltransferase 10 domain containing protein MET	100.0
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	100.0
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	100.0
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.58
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.49
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.48
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.48
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.41
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.35
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.34
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.27
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.27
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.23
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.2
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.19
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.17
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.15
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.11
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.09
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.08
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.06
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.06
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	99.04
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.01
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	98.96
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.96
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.93
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.91
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.9
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.89
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.88
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	98.83
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.83
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.82
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.8
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.79
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.79
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.76
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.72
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.71
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.71
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.71
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.69
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.67
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.66
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.65
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.64
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.63
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.59
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.58
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.58
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.57
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.53
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.52
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.52
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.52
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.51
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.5
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.49
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.48
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.47
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.45
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.36
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.33
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.24
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.21
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	98.18
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.15
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.15
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.09
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.06
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	97.95
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.94
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	97.92
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	97.89
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.82
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	97.82
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	97.82
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.8
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	97.66
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.63
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	97.57
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	97.51
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.49
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	97.45
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.37
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	97.3
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	97.3
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	97.04
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	96.99
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	96.52
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.45
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	96.27
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	95.97
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	95.9
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	95.5
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	95.39
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	95.22
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	95.07
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	95.04
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	91.22
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	89.31
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	88.95
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	86.07
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	86.06
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	85.71
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	84.07
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	83.59
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	82.19
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	82.01
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	81.78

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-62  Score=476.57  Aligned_cols=240  Identities=45%  Similarity=0.797  Sum_probs=202.0

Q ss_pred             cceecCChhhHHHHHHHHHhHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHH
Q 010968           51 PRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIY  130 (496)
Q Consensus        51 ~~IDf~d~~A~r~Lt~aLL~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~  130 (496)
                      .+|||+|++|+++||++||++|||++|+||+++||||+|+|++|++||++++.....    ......++||||||||||+
T Consensus         1 ~~idf~~~~a~~~l~~~ll~~f~gl~~~v~~~~LiPr~~~r~~~~~~i~~l~~~~~~----~~~~~~~~LDiGtGsg~I~   76 (250)
T d2h00a1           1 VSLNFKDPEAVRALTCTLLREDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDS----DKSTLRRGIDIGTGASCIY   76 (250)
T ss_dssp             CCSCTTSHHHHHHHHHHHHHHHHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCG----GGCCCCEEEEESCTTTTHH
T ss_pred             CeeecCChHHHHHHHHHHHHHHcCceEEeCCCeecCCCCCHHHHHHHHHHHhhhhcc----CccccceEEEeCCCchHHH
Confidence            379999999999999999999999999999999999999999999999999975321    1234579999999999999


Q ss_pred             HHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCC
Q 010968          131 PLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEP  210 (496)
Q Consensus       131 ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  210 (496)
                      ++|+++.|+|+|+|+|||++|+++|++|++.|+ +++++.+++.+...                                
T Consensus        77 ~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~-l~~~~~~~~~~~~~--------------------------------  123 (250)
T d2h00a1          77 PLLGATLNGWYFLATEVDDMCFNYAKKNVEQNN-LSDLIKVVKVPQKT--------------------------------  123 (250)
T ss_dssp             HHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCTTC--------------------------------
T ss_pred             HHHHHhCCCccccceecCHHHHHHHHHHHHHhC-CCcceeeeeeccHH--------------------------------
Confidence            999999999999999999999999999999995 99999999876431                                


Q ss_pred             CCCCCCCCCCCCCCCCCCCCcccccc-CCCCcEEEEEECCCCccCcccc---------cCCCCcccCCCCCcccccCchH
Q 010968          211 SSSSSFNLPAGAQSSYHGPPVLVGVV-RDGEQFDFCICNPPFFESMEEA---------GLNPKTSCGGTPEEMVCSGGER  280 (496)
Q Consensus       211 ~~s~~~~~~~~~~~~~~~~~il~~v~-~~~e~FDfImcNPPY~~s~eea---------~~eP~~al~G~~~Emv~~GGel  280 (496)
                                         .++..+. ...++||+||||||||++.+++         ..+|..+++|+.+||+++|||+
T Consensus       124 -------------------~~~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~  184 (250)
T d2h00a1         124 -------------------LLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGEL  184 (250)
T ss_dssp             -------------------SSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHH
T ss_pred             -------------------hhhhhhhhcccCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchh
Confidence                               0111111 1246899999999999877653         1468899999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEecCCCeeEEEEEEeeCC
Q 010968          281 AFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVP  346 (496)
Q Consensus       281 ~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t~Rw~lAWsF~~  346 (496)
                      +||++||++|..+++++||||+|+|++++++.+++.|++.|+..+++++|.||++.||+|||||.+
T Consensus       185 ~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~i~~~L~~~g~~~i~~ie~~qG~~~r~iiaWsf~~  250 (250)
T d2h00a1         185 EFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEFCQGRTMRWALAWSFYD  250 (250)
T ss_dssp             HHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHHHHHTTCSEEEEEEEEETTEEEEEEEEESCC
T ss_pred             hHHHHHHHHHHHHhhcCcEEEEEecchhhHHHHHHHHHHcCCCeEEEEEecCCCEeEEEEEEEecC
Confidence            999999999999999999999999999999999999999999999999999999999999999974

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.7e-36  Score=300.19  Aligned_cols=193  Identities=20%  Similarity=0.216  Sum_probs=168.7

Q ss_pred             hHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcH
Q 010968           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (496)
Q Consensus        70 ~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~  149 (496)
                      ++|||++|.|.++||||| |+|+..++|+.....          ..+.++||+|||||||+++|+.+.|+++|+|+|||+
T Consensus        74 ~~F~~~~~~v~~~VlIPR-peTE~lv~~~l~~~~----------~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~  142 (274)
T d2b3ta1          74 REFWSLPLFVSPATLIPR-PDTECLVEQALARLP----------EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMP  142 (274)
T ss_dssp             EEETTEEEECCTTSCCCC-TTHHHHHHHHHHHSC----------SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSH
T ss_pred             EEEeeeEEEEeccccccc-cchhhhhhhHhhhhc----------ccccceeeeehhhhHHHHHHHhhCCcceeeeccchh
Confidence            469999999999999999 888877776654432          245689999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010968          150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP  229 (496)
Q Consensus       150 ~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~  229 (496)
                      +|+++|++|+++++ + .+|+++++|..                                                    
T Consensus       143 ~Al~~A~~Na~~~~-~-~~v~~~~~d~~----------------------------------------------------  168 (274)
T d2b3ta1         143 DAVSLAQRNAQHLA-I-KNIHILQSDWF----------------------------------------------------  168 (274)
T ss_dssp             HHHHHHHHHHHHHT-C-CSEEEECCSTT----------------------------------------------------
T ss_pred             HHHhHHHHHHHHhC-c-ccceeeecccc----------------------------------------------------
Confidence            99999999999995 6 46999888743                                                    


Q ss_pred             CccccccCCCCcEEEEEECCCCccCccc------ccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEE
Q 010968          230 PVLVGVVRDGEQFDFCICNPPFFESMEE------AGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSM  303 (496)
Q Consensus       230 ~il~~v~~~~e~FDfImcNPPY~~s~ee------a~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsm  303 (496)
                         ..+  .+.+||+|||||||++..+.      ..++|..|+.|+.+       |+.|+++|++++..+++++|++.++
T Consensus       169 ---~~~--~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~d-------Gl~~~~~i~~~a~~~L~~~G~l~lE  236 (274)
T d2b3ta1         169 ---SAL--AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADS-------GMADIVHIIEQSRNALVSGGFLLLE  236 (274)
T ss_dssp             ---GGG--TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHH-------HTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ---ccc--CCCceeEEEecchhhhhhhhcccccccccchhhhcccccc-------cchHHHHHHHHHHHhcCCCCEEEEE
Confidence               111  24689999999999987642      24799999999988       9999999999999999999999999


Q ss_pred             eCCcCcHHHHHHHHHHcCCeeEEEEEecCCCeeEEEEE
Q 010968          304 VGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLA  341 (496)
Q Consensus       304 vGk~s~l~~L~~~L~~~g~~~vk~~ed~qG~t~Rw~lA  341 (496)
                      +| ..|.+.+.+++++.|+..+++.+|++|+ .|.++|
T Consensus       237 ig-~~q~~~v~~~l~~~gf~~i~~~kDl~g~-~R~v~~  272 (274)
T d2b3ta1         237 HG-WQQGEAVRQAFILAGYHDVETCRDYGDN-ERVTLG  272 (274)
T ss_dssp             CC-SSCHHHHHHHHHHTTCTTCCEEECTTSS-EEEEEE
T ss_pred             EC-chHHHHHHHHHHHCCCCeEEEEECCCCC-ceEEEE
Confidence            99 8999999999999999999999999998 688877

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3.5e-33  Score=275.99  Aligned_cols=188  Identities=18%  Similarity=0.246  Sum_probs=159.1

Q ss_pred             hHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcH
Q 010968           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (496)
Q Consensus        70 ~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~  149 (496)
                      ++|||++|.|.++||||| |+|+..+.|+.+.....         ....++|+|||+|||+++++ +.++++|+|+|||+
T Consensus        75 ~~F~~~~f~v~~~vlIPR-peTE~lv~~~~~~~~~~---------~~~~vld~g~GsG~i~~~la-~~~~~~v~a~Dis~  143 (271)
T d1nv8a_          75 KEFMGLSFLVEEGVFVPR-PETEELVELALELIRKY---------GIKTVADIGTGSGAIGVSVA-KFSDAIVFATDVSS  143 (271)
T ss_dssp             EEETTEEEECCTTSCCCC-TTHHHHHHHHHHHHHHH---------TCCEEEEESCTTSHHHHHHH-HHSSCEEEEEESCH
T ss_pred             EEEeeeEEEEecCccCch-hhhhhhhhhhhhhhccc---------cccEEEEeeeeeehhhhhhh-hcccceeeechhhh
Confidence            469999999999999999 89999999888776542         34589999999999998876 57999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010968          150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP  229 (496)
Q Consensus       150 ~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~  229 (496)
                      +|+++|++|+++|+ +.+++.++.++...                                                   
T Consensus       144 ~Al~~A~~Na~~~~-~~~~~~i~~~~~~~---------------------------------------------------  171 (271)
T d1nv8a_         144 KAVEIARKNAERHG-VSDRFFVRKGEFLE---------------------------------------------------  171 (271)
T ss_dssp             HHHHHHHHHHHHTT-CTTSEEEEESSTTG---------------------------------------------------
T ss_pred             hHHHHHHHHHHHcC-CCceeEEeeccccc---------------------------------------------------
Confidence            99999999999995 88899988876431                                                   


Q ss_pred             CccccccCCCCcEEEEEECCCCccCcccc----cCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeC
Q 010968          230 PVLVGVVRDGEQFDFCICNPPFFESMEEA----GLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVG  305 (496)
Q Consensus       230 ~il~~v~~~~e~FDfImcNPPY~~s~eea----~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvG  305 (496)
                          ......++||+|||||||+++.+..    .+||+.|+.|+.+       |+.||++|+.   ++++++||+.+|+|
T Consensus       172 ----~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~d-------Gl~~~r~i~~---~~L~~~G~l~~Eig  237 (271)
T d1nv8a_         172 ----PFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGED-------GLDFYREFFG---RYDTSGKIVLMEIG  237 (271)
T ss_dssp             ----GGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTT-------SCHHHHHHHH---HCCCTTCEEEEECC
T ss_pred             ----ccccccCcccEEEEcccccCcccccceeeeeccccccccccc-------hHHHHHHHHH---HhcCCCCEEEEEEC
Confidence                1111236899999999999876432    3799999999998       8999999985   58899999999999


Q ss_pred             CcCcHHHHHHHHHHcCCeeEEEEEecCCCeeEEEEE
Q 010968          306 RKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLA  341 (496)
Q Consensus       306 k~s~l~~L~~~L~~~g~~~vk~~ed~qG~t~Rw~lA  341 (496)
                       ..|.+.+.+++.+.|+     .+|++|+ .|++++
T Consensus       238 -~~Q~~~v~~l~~~~g~-----~kDl~g~-~R~~~~  266 (271)
T d1nv8a_         238 -EDQVEELKKIVSDTVF-----LKDSAGK-YRFLLL  266 (271)
T ss_dssp             -TTCHHHHTTTSTTCEE-----EECTTSS-EEEEEE
T ss_pred             -HHHHHHHHHHHHhCCE-----EeccCCC-cEEEEE
Confidence             8999999998887654     6899999 598876

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.58  E-value=2.4e-14  Score=131.42  Aligned_cols=121  Identities=24%  Similarity=0.277  Sum_probs=93.5

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCC-cEEEEEccCCCCCCcccccccCCccc
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISE-LIEIRKVDNSESTPSIQESLTGKSVQ  193 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~-rI~~v~~d~~~~~p~~~~~~~~~~~~  193 (496)
                      ...+|||||||+|.+++.++..  ..+++|+|+|+.|++.|++|++.|+ +.. +++++.+|..+               
T Consensus        52 ~~~~VLDiGcG~G~~~~~la~~--~~~v~~iD~s~~~i~~a~~n~~~~~-l~~~~i~~~~~d~~~---------------  113 (194)
T d1dusa_          52 KDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNN-LDNYDIRVVHSDLYE---------------  113 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTT-CTTSCEEEEECSTTT---------------
T ss_pred             CCCeEEEEeecCChhHHHHHhh--ccccceeeeccccchhHHHHHHHhC-CccceEEEEEcchhh---------------
Confidence            3468999999999998877653  4589999999999999999999995 653 68888876431               


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcc
Q 010968          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (496)
Q Consensus       194 ~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Em  273 (496)
                                                              .+  .+++||+|+|||||+.                    
T Consensus       114 ----------------------------------------~~--~~~~fD~Ii~~~p~~~--------------------  131 (194)
T d1dusa_         114 ----------------------------------------NV--KDRKYNKIITNPPIRA--------------------  131 (194)
T ss_dssp             ----------------------------------------TC--TTSCEEEEEECCCSTT--------------------
T ss_pred             ----------------------------------------hh--ccCCceEEEEcccEEe--------------------
Confidence                                                    11  2468999999999953                    


Q ss_pred             cccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHc
Q 010968          274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKV  320 (496)
Q Consensus       274 v~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~  320 (496)
                           +...+..+++++..+++++|.+..++......+.+...+++.
T Consensus       132 -----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~  173 (194)
T d1dusa_         132 -----GKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDV  173 (194)
T ss_dssp             -----CHHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHH
T ss_pred             -----cchhhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHh
Confidence                 233467788999999999998877777555566666666653

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.49  E-value=2.7e-13  Score=123.65  Aligned_cols=142  Identities=15%  Similarity=0.096  Sum_probs=107.2

Q ss_pred             eeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC
Q 010968           84 LCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP  163 (496)
Q Consensus        84 LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~  163 (496)
                      -||. |.+++--..|...+..         ....+|||||||+|.+++.++..  ..+|+|+|+++++++.|++|+++++
T Consensus        12 ~~~~-~t~~eir~~il~~l~~---------~~g~~VLDiGcGsG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n~~~~g   79 (186)
T d1l3ia_          12 SVPG-PTAMEVRCLIMCLAEP---------GKNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQRHG   79 (186)
T ss_dssp             TSCC-CCCHHHHHHHHHHHCC---------CTTCEEEEESCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             CCCC-CChHHHHHHHHHhcCC---------CCCCEEEEEECCeEccccccccc--ceEEEEecCCHHHHHHHHHHHHHcC
Confidence            4675 6777776666666642         13458999999999998887653  4699999999999999999999995


Q ss_pred             CCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEE
Q 010968          164 HISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFD  243 (496)
Q Consensus       164 ~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FD  243 (496)
                       +.++|+++.+|..+                                                    ++    ...+.||
T Consensus        80 -l~~~v~~~~gda~~----------------------------------------------------~~----~~~~~~D  102 (186)
T d1l3ia_          80 -LGDNVTLMEGDAPE----------------------------------------------------AL----CKIPDID  102 (186)
T ss_dssp             -CCTTEEEEESCHHH----------------------------------------------------HH----TTSCCEE
T ss_pred             -CCcceEEEECchhh----------------------------------------------------cc----cccCCcC
Confidence             88899999886321                                                    11    1236799


Q ss_pred             EEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCe
Q 010968          244 FCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVT  323 (496)
Q Consensus       244 fImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~  323 (496)
                      .|+||.+...                             +..+++....+++++|++........+...+.+.+++.|+.
T Consensus       103 ~v~~~~~~~~-----------------------------~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~  153 (186)
T d1l3ia_         103 IAVVGGSGGE-----------------------------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFD  153 (186)
T ss_dssp             EEEESCCTTC-----------------------------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCC
T ss_pred             EEEEeCcccc-----------------------------chHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCC
Confidence            9999864311                             34567777788899999877666567788888899998863

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.48  E-value=1.6e-14  Score=131.63  Aligned_cols=87  Identities=16%  Similarity=0.235  Sum_probs=60.8

Q ss_pred             hcCcEEEecCCCeeCCCCCc--HhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcH
Q 010968           72 DHGLNWWIPDGQLCPTVPNR--SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (496)
Q Consensus        72 ffGL~~~Vp~g~LiPrvP~R--~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~  149 (496)
                      +=|+++.+|.+ +=|+ |.+  +....|+...+.           +..+|||+|||+|++++.++.  .+++++++|+|+
T Consensus         9 ~kg~~l~~~~~-~Rpt-~~~v~e~lf~~l~~~~~-----------~g~~vLDl~~G~G~~~i~a~~--~ga~vv~vD~~~   73 (171)
T d1ws6a1           9 ARGVALKVPAS-ARPS-PVRLRKALFDYLRLRYP-----------RRGRFLDPFAGSGAVGLEAAS--EGWEAVLVEKDP   73 (171)
T ss_dssp             GTTCEECCCTT-CCCC-CHHHHHHHHHHHHHHCT-----------TCCEEEEETCSSCHHHHHHHH--TTCEEEEECCCH
T ss_pred             ccCCEeCCCCC-CCCC-cHHHHHHHHHHhhcccc-----------CCCeEEEeccccchhhhhhhh--ccchhhhcccCH
Confidence            34778888776 4444 222  233344443321           345899999999999876544  367999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCcEEEEEc
Q 010968          150 VALEWAEKNVKSNPHISELIEIRKV  174 (496)
Q Consensus       150 ~AL~~A~~N~~~N~~L~~rI~~v~~  174 (496)
                      +|++.|++|++.++ +++++....+
T Consensus        74 ~a~~~~~~N~~~~~-~~~~v~~~~~   97 (171)
T d1ws6a1          74 EAVRLLKENVRRTG-LGARVVALPV   97 (171)
T ss_dssp             HHHHHHHHHHHHHT-CCCEEECSCH
T ss_pred             HHHhhhhHHHHhhc-cccceeeeeh
Confidence            99999999999995 7776655433

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.48  E-value=2.4e-13  Score=126.77  Aligned_cols=77  Identities=14%  Similarity=0.082  Sum_probs=57.5

Q ss_pred             CCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCC
Q 010968           86 PTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHI  165 (496)
Q Consensus        86 PrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L  165 (496)
                      ||+|.-+..+.|+.+.....         +..+|||+|||+|++++.++. ....+|+|+|||+.+++.|++|++.++  
T Consensus        26 ~Tp~~~a~~~~~~~~~~~dl---------~g~~vLDlg~GtG~l~i~a~~-~g~~~v~~vdi~~~~~~~a~~N~~~~~--   93 (201)
T d1wy7a1          26 RTPGNAASELLWLAYSLGDI---------EGKVVADLGAGTGVLSYGALL-LGAKEVICVEVDKEAVDVLIENLGEFK--   93 (201)
T ss_dssp             CCCHHHHHHHHHHHHHTTSS---------TTCEEEEETCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHTGGGT--
T ss_pred             CCCHHHHHHHHHHHHhcCCC---------CCCEEEECcCcchHHHHHHHH-cCCCEEEEEcCcHHHHHHHHHHHHHcC--
Confidence            56555566677777765431         346899999999999876553 334589999999999999999998874  


Q ss_pred             CCcEEEEEcc
Q 010968          166 SELIEIRKVD  175 (496)
Q Consensus       166 ~~rI~~v~~d  175 (496)
                       .+++++..|
T Consensus        94 -~~~~~~~~d  102 (201)
T d1wy7a1          94 -GKFKVFIGD  102 (201)
T ss_dssp             -TSEEEEESC
T ss_pred             -CCceEEECc
Confidence             356776665

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.41  E-value=1.4e-13  Score=128.90  Aligned_cols=73  Identities=21%  Similarity=0.080  Sum_probs=55.4

Q ss_pred             CCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCC
Q 010968           86 PTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHI  165 (496)
Q Consensus        86 PrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L  165 (496)
                      ||+|.-+.++.|..+.+...         ...+|||+|||+|++++.++. ....+|+|+|+|++|++.|++|+..    
T Consensus        28 ~T~~~~a~~~~~~~~~~~dl---------~Gk~VLDlGcGtG~l~i~a~~-~ga~~V~~vDid~~a~~~ar~N~~~----   93 (197)
T d1ne2a_          28 PTDASTAAYFLIEIYNDGNI---------GGRSVIDAGTGNGILACGSYL-LGAESVTAFDIDPDAIETAKRNCGG----   93 (197)
T ss_dssp             CCCHHHHHHHHHHHHHHTSS---------BTSEEEEETCTTCHHHHHHHH-TTBSEEEEEESCHHHHHHHHHHCTT----
T ss_pred             CCCHHHHHHHHHHHHHcCCC---------CCCEEEEeCCCCcHHHHHHHH-cCCCcccccccCHHHHHHHHHcccc----
Confidence            55566688888888887542         346899999999998765443 3345899999999999999999742    


Q ss_pred             CCcEEEEEcc
Q 010968          166 SELIEIRKVD  175 (496)
Q Consensus       166 ~~rI~~v~~d  175 (496)
                         +.++..|
T Consensus        94 ---~~~~~~D  100 (197)
T d1ne2a_          94 ---VNFMVAD  100 (197)
T ss_dssp             ---SEEEECC
T ss_pred             ---ccEEEEe
Confidence               5566665

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.35  E-value=1.4e-12  Score=129.56  Aligned_cols=134  Identities=16%  Similarity=0.131  Sum_probs=97.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||+|||+|.+++.++.. ...+|+++|+|+.++++|++|++.|+ +.++++++.+|...                 
T Consensus       146 g~~VLDl~~g~G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~ng-l~~~~~~~~~d~~~-----------------  206 (324)
T d2as0a2         146 GDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNG-VEDRMKFIVGSAFE-----------------  206 (324)
T ss_dssp             TCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEESCHHH-----------------
T ss_pred             CCeeecccCcccchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHHcC-CCccceeeechhhh-----------------
Confidence            458999999999998776644 23489999999999999999999995 88899998887421                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         ++......+++||+|++|||++.......          ..    
T Consensus       207 -----------------------------------~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~----------~~----  237 (324)
T d2as0a2         207 -----------------------------------EMEKLQKKGEKFDIVVLDPPAFVQHEKDL----------KA----  237 (324)
T ss_dssp             -----------------------------------HHHHHHHTTCCEEEEEECCCCSCSSGGGH----------HH----
T ss_pred             -----------------------------------hhHHHHhccCCCCchhcCCccccCCHHHH----------HH----
Confidence                                               11122223578999999999986533211          01    


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEE-EEeCCcCcHHHHHHHHHHc
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYT-SMVGRKSNLKFLISKLRKV  320 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwft-smvGk~s~l~~L~~~L~~~  320 (496)
                         ...-+.+++..+..+++++|++. +-....-+.+.+.+.+++.
T Consensus       238 ---~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~~a  280 (324)
T d2as0a2         238 ---GLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAA  280 (324)
T ss_dssp             ---HHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHHHH
Confidence               35568889999999999999854 3444455566666665543

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.34  E-value=3.3e-12  Score=123.50  Aligned_cols=138  Identities=15%  Similarity=0.093  Sum_probs=99.0

Q ss_pred             CCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCc
Q 010968           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL  168 (496)
Q Consensus        89 P~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~r  168 (496)
                      |+|.-.+.|+++.+.           ...+|||+|||+|.+++.++  ..+.+|+|+|+|+.|++.|++|++.|+ ++  
T Consensus       105 ~TT~l~l~~l~~~~~-----------~g~~VLDiGcGsG~l~i~aa--~~g~~V~gvDis~~av~~A~~na~~n~-~~--  168 (254)
T d2nxca1         105 ETTRLALKALARHLR-----------PGDKVLDLGTGSGVLAIAAE--KLGGKALGVDIDPMVLPQAEANAKRNG-VR--  168 (254)
T ss_dssp             HHHHHHHHHHHHHCC-----------TTCEEEEETCTTSHHHHHHH--HTTCEEEEEESCGGGHHHHHHHHHHTT-CC--
T ss_pred             chhhHHHHHHHhhcC-----------ccCEEEEcccchhHHHHHHH--hcCCEEEEEECChHHHHHHHHHHHHcC-Cc--
Confidence            456667777766543           23589999999998876554  346899999999999999999999995 65  


Q ss_pred             EEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEEC
Q 010968          169 IEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN  248 (496)
Q Consensus       169 I~~v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcN  248 (496)
                      ++++.++..                                                       ..+  +.++||+|+||
T Consensus       169 ~~~~~~d~~-------------------------------------------------------~~~--~~~~fD~V~an  191 (254)
T d2nxca1         169 PRFLEGSLE-------------------------------------------------------AAL--PFGPFDLLVAN  191 (254)
T ss_dssp             CEEEESCHH-------------------------------------------------------HHG--GGCCEEEEEEE
T ss_pred             eeEEecccc-------------------------------------------------------ccc--cccccchhhhc
Confidence            455555421                                                       011  23689999999


Q ss_pred             CCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEE-EeCCcCcHHHHHHHHHHcCCeeEEE
Q 010968          249 PPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS-MVGRKSNLKFLISKLRKVGVTIVKT  327 (496)
Q Consensus       249 PPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwfts-mvGk~s~l~~L~~~L~~~g~~~vk~  327 (496)
                      -.+                             ..+..++++..+.++++|++.. -+- ..+...+.+.+++.|+..++.
T Consensus       192 i~~-----------------------------~~l~~l~~~~~~~LkpGG~lilSgil-~~~~~~v~~~~~~~Gf~~~~~  241 (254)
T d2nxca1         192 LYA-----------------------------ELHAALAPRYREALVPGGRALLTGIL-KDRAPLVREAMAGAGFRPLEE  241 (254)
T ss_dssp             CCH-----------------------------HHHHHHHHHHHHHEEEEEEEEEEEEE-GGGHHHHHHHHHHTTCEEEEE
T ss_pred             ccc-----------------------------ccHHHHHHHHHHhcCCCcEEEEEecc-hhhHHHHHHHHHHCCCEEEEE
Confidence            421                             1245566777778888887653 232 467899999999999987776


Q ss_pred             EE
Q 010968          328 TE  329 (496)
Q Consensus       328 ~e  329 (496)
                      .+
T Consensus       242 ~~  243 (254)
T d2nxca1         242 AA  243 (254)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.27  E-value=3.2e-12  Score=113.64  Aligned_cols=59  Identities=10%  Similarity=0.001  Sum_probs=50.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||+|||||.+++..+.+-. .+|+++|+|+.|++.+++|++.++ +.+++++++.|.
T Consensus        15 g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~~-~~~~~~ii~~D~   73 (152)
T d2esra1          15 GGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTK-AENRFTLLKMEA   73 (152)
T ss_dssp             SCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTT-CGGGEEEECSCH
T ss_pred             CCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhcc-cccchhhhcccc
Confidence            46899999999999876655422 499999999999999999999995 889999998763

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.27  E-value=2.2e-11  Score=117.80  Aligned_cols=60  Identities=10%  Similarity=0.112  Sum_probs=52.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ..+|||+|||+|.+++.+|.. ...+|+|+|+|+.|+++|++|++.|+ ++++|+++++|..
T Consensus       108 g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~-l~~~v~~~~~D~~  167 (260)
T d2frna1         108 DELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNK-VEDRMSAYNMDNR  167 (260)
T ss_dssp             TCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTT-CTTTEEEECSCTT
T ss_pred             ccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhC-CCceEEEEEcchH
Confidence            458999999999998877754 56799999999999999999999995 9999999988743

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.23  E-value=1.6e-11  Score=122.08  Aligned_cols=148  Identities=12%  Similarity=0.151  Sum_probs=99.0

Q ss_pred             hHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCC-cEEE
Q 010968           93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISE-LIEI  171 (496)
Q Consensus        93 nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~-rI~~  171 (496)
                      .--.|+.+++...        .+..+|||++||+|.+++.++.  .+++|++||+|+.|+++|++|++.|+ +.+ ++++
T Consensus       118 ~nr~~~~~~~~~~--------~~~~rVLdlf~~tG~~sl~aa~--~GA~V~~VD~s~~al~~a~~N~~ln~-~~~~~~~~  186 (309)
T d2igta1         118 VHWEWLKNAVETA--------DRPLKVLNLFGYTGVASLVAAA--AGAEVTHVDASKKAIGWAKENQVLAG-LEQAPIRW  186 (309)
T ss_dssp             HHHHHHHHHHHHS--------SSCCEEEEETCTTCHHHHHHHH--TTCEEEEECSCHHHHHHHHHHHHHHT-CTTSCEEE
T ss_pred             HHHHHHHHHHhhc--------cCCCeEEEecCCCcHHHHHHHh--CCCeEEEEeChHHHHHHHHHhhhhhc-ccCCcEEE
Confidence            3346888877642        2456999999999998776653  57899999999999999999999995 654 6999


Q ss_pred             EEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCC
Q 010968          172 RKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPF  251 (496)
Q Consensus       172 v~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY  251 (496)
                      +..|...                                                    ++....+...+||+||||||.
T Consensus       187 i~~D~~~----------------------------------------------------~l~~~~~~~~~fD~IilDPP~  214 (309)
T d2igta1         187 ICEDAMK----------------------------------------------------FIQREERRGSTYDIILTDPPK  214 (309)
T ss_dssp             ECSCHHH----------------------------------------------------HHHHHHHHTCCBSEEEECCCS
T ss_pred             EeCCHHH----------------------------------------------------hHHHHhhcCCCCCEEEECCCc
Confidence            8877431                                                    122222235789999999998


Q ss_pred             ccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeC--CcCcHHHHHHHHHH
Q 010968          252 FESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVG--RKSNLKFLISKLRK  319 (496)
Q Consensus       252 ~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvG--k~s~l~~L~~~L~~  319 (496)
                      |.......          ..      .-...+..++..+..++.++|++.....  -.-+...+.+++++
T Consensus       215 f~~~~~~~----------~~------~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~  268 (309)
T d2igta1         215 FGRGTHGE----------VW------QLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRE  268 (309)
T ss_dssp             EEECTTCC----------EE------EHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccccccch----------hH------HHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            85422110          00      0244567788888888888876543332  12234444444443

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.20  E-value=2e-11  Score=121.08  Aligned_cols=130  Identities=15%  Similarity=0.174  Sum_probs=91.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||+|||+|.+++.++.  ...+|+++|+|+.+++.|++|++.|+ +. .++++..|..+                 
T Consensus       146 g~rVLDl~~gtG~~s~~~a~--g~~~V~~vD~s~~al~~a~~n~~~ng-l~-~~~~i~~d~~~-----------------  204 (318)
T d1wxxa2         146 GERALDVFSYAGGFALHLAL--GFREVVAVDSSAEALRRAEENARLNG-LG-NVRVLEANAFD-----------------  204 (318)
T ss_dssp             EEEEEEETCTTTHHHHHHHH--HEEEEEEEESCHHHHHHHHHHHHHTT-CT-TEEEEESCHHH-----------------
T ss_pred             CCeeeccCCCCcHHHHHHHh--cCCcEEeecchHHHHHHHHHHHHHcC-CC-CcceeeccHHH-----------------
Confidence            46899999999999877653  45699999999999999999999995 74 68888876321                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         ++.......++||+|++|||++.......          .     
T Consensus       205 -----------------------------------~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~----------~-----  234 (318)
T d1wxxa2         205 -----------------------------------LLRRLEKEGERFDLVVLDPPAFAKGKKDV----------E-----  234 (318)
T ss_dssp             -----------------------------------HHHHHHHTTCCEEEEEECCCCSCCSTTSH----------H-----
T ss_pred             -----------------------------------HhhhhHhhhcCCCEEEEcCCccccchHHH----------H-----
Confidence                                               11112223578999999999986432100          0     


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEE-EeCCcCcHHHHHHHHH
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTS-MVGRKSNLKFLISKLR  318 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwfts-mvGk~s~l~~L~~~L~  318 (496)
                        .....+.+++..+..+++++|++.+ -....-+.+.+.+.+.
T Consensus       235 --~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~  276 (318)
T d1wxxa2         235 --RAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVA  276 (318)
T ss_dssp             --HHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHH
Confidence              1345678899999999999998643 2222234444444443

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.19  E-value=6e-11  Score=117.89  Aligned_cols=133  Identities=8%  Similarity=0.049  Sum_probs=92.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCC-CcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHIS-ELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~-~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|||++||+|.+++.++. ....+|+++|+|+.++++|++|++.|+ ++ ++++++.+|...                
T Consensus       145 g~~VLdlf~~~G~~sl~aa~-~ga~~V~~vD~s~~a~~~a~~N~~~n~-l~~~~~~~i~~d~~~----------------  206 (317)
T d2b78a2         145 GKTVLNLFSYTAAFSVAAAM-GGAMATTSVDLAKRSRALSLAHFEANH-LDMANHQLVVMDVFD----------------  206 (317)
T ss_dssp             TCEEEEETCTTTHHHHHHHH-TTBSEEEEEESCTTHHHHHHHHHHHTT-CCCTTEEEEESCHHH----------------
T ss_pred             CCceeecCCCCcHHHHHHHh-CCCceEEEecCCHHHHHHHHHHHHHhc-ccCcceEEEEccHHH----------------
Confidence            45899999999998765443 222479999999999999999999996 74 579999887431                


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                          ++....+..++||+|+++||.+......      .    ..   
T Consensus       207 ------------------------------------~l~~~~~~~~~fD~Ii~DPP~f~~~~~~------~----~~---  237 (317)
T d2b78a2         207 ------------------------------------YFKYARRHHLTYDIIIIDPPSFARNKKE------V----FS---  237 (317)
T ss_dssp             ------------------------------------HHHHHHHTTCCEEEEEECCCCC-----C------C----CC---
T ss_pred             ------------------------------------HHHHHHhhcCCCCEEEEcChhhccchhH------H----HH---
Confidence                                                2222233457899999999987643211      0    11   


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEEEE-EeCCcCcHHHHHHHHHH
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWYTS-MVGRKSNLKFLISKLRK  319 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwfts-mvGk~s~l~~L~~~L~~  319 (496)
                          ...-+.+|+..+..+++++|++.+ .....-+.+.+...+.+
T Consensus       238 ----~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~  279 (317)
T d2b78a2         238 ----VSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEK  279 (317)
T ss_dssp             ----HHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHH
Confidence                344578899999999999998643 44434456666665544

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.17  E-value=8.4e-11  Score=113.40  Aligned_cols=127  Identities=13%  Similarity=0.139  Sum_probs=101.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|||+|||||.+...|+... ++.+|+++|+++++++.|++|++.++ ...+|++...|..+                
T Consensus        86 G~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~-~~~nv~~~~~Di~~----------------  148 (250)
T d1yb2a1          86 GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY-DIGNVRTSRSDIAD----------------  148 (250)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS-CCTTEEEECSCTTT----------------
T ss_pred             cCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc-CCCceEEEEeeeec----------------
Confidence            3589999999999998888765 56799999999999999999999874 56789988776431                


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                          .+     .++.||.|++|.|          +|.           
T Consensus       149 ------------------------------------~~-----~~~~fD~V~ld~p----------~p~-----------  166 (250)
T d1yb2a1         149 ------------------------------------FI-----SDQMYDAVIADIP----------DPW-----------  166 (250)
T ss_dssp             ------------------------------------CC-----CSCCEEEEEECCS----------CGG-----------
T ss_pred             ------------------------------------cc-----ccceeeeeeecCC----------chH-----------
Confidence                                                01     2457999999876          121           


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEec
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFV  331 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~  331 (496)
                                ..+++....++++|++.+.+.--+|+..+.+.|++.|+..+++.|.+
T Consensus       167 ----------~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf~~i~~~E~~  213 (250)
T d1yb2a1         167 ----------NHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLETVELM  213 (250)
T ss_dssp             ----------GSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEEEEEE
T ss_pred             ----------HHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCCceeEEEEEE
Confidence                      13566677889999988877766889999999999999999888865

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.15  E-value=5.2e-10  Score=103.49  Aligned_cols=59  Identities=14%  Similarity=0.132  Sum_probs=49.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHH--hcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGAS--LLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~--~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ..+|||||||+|.+...|+..  .++++|+|+|+|+.|++.|+++++..+ ...++++..+|
T Consensus        40 ~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~-~~~~~~~~~~d  100 (225)
T d1im8a_          40 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH-SEIPVEILCND  100 (225)
T ss_dssp             TCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSC-CSSCEEEECSC
T ss_pred             CCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhc-ccchhhhccch
Confidence            358999999999988778765  378999999999999999999998774 66677776554

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=1.2e-10  Score=106.43  Aligned_cols=91  Identities=11%  Similarity=-0.011  Sum_probs=59.3

Q ss_pred             hcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHH
Q 010968           72 DHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA  151 (496)
Q Consensus        72 ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~A  151 (496)
                      +=|..+..|++. --| |.+.---+-|...|...        -...++||++||||++++-.+.+ ...+|++||+|++|
T Consensus        10 ~kg~~l~~~~~~-~~R-Pt~~~vre~lfn~l~~~--------~~~~~vLDlfaGsG~~giealsr-Ga~~v~~VE~~~~a   78 (183)
T d2fpoa1          10 WRGRKLPVPDSP-GLR-PTTDRVRETLFNWLAPV--------IVDAQCLDCFAGSGALGLEALSR-YAAGATLIEMDRAV   78 (183)
T ss_dssp             GTTCEEECCCC--------CHHHHHHHHHHHHHH--------HTTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHH
T ss_pred             cCCCEecCCCCC-CcC-cCcHHHHHHHHhhhhcc--------cchhhhhhhhccccceeeeEEec-CcceeEEEEEeech
Confidence            346678888764 223 34433333333333221        02358999999999998876554 33589999999999


Q ss_pred             HHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          152 LEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       152 L~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ++.+++|++.++ . ..++++..|
T Consensus        79 ~~~~k~N~~~~~-~-~~~~ii~~d  100 (183)
T d2fpoa1          79 SQQLIKNLATLK-A-GNARVVNSN  100 (183)
T ss_dssp             HHHHHHHHHHTT-C-CSEEEECSC
T ss_pred             hhHHHHHHhhcc-c-cceeeeeec
Confidence            999999999874 5 357777665

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.09  E-value=5.8e-10  Score=108.08  Aligned_cols=127  Identities=16%  Similarity=0.202  Sum_probs=99.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|||+|||||.+...||... ++.+|+++|+++++++.|++|+++++ +.+++.+...|..                 
T Consensus       104 G~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g-~~~~v~~~~~d~~-----------------  165 (266)
T d1o54a_         104 GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG-LIERVTIKVRDIS-----------------  165 (266)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT-CGGGEEEECCCGG-----------------
T ss_pred             CCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhc-cccCcEEEecccc-----------------
Confidence            4689999999999999998765 67899999999999999999999985 7778887655421                 


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                            .++  +...||.|+..-|          +|.           
T Consensus       166 --------------------------------------~~~--~~~~~D~V~~d~p----------~p~-----------  184 (266)
T d1o54a_         166 --------------------------------------EGF--DEKDVDALFLDVP----------DPW-----------  184 (266)
T ss_dssp             --------------------------------------GCC--SCCSEEEEEECCS----------CGG-----------
T ss_pred             --------------------------------------ccc--cccceeeeEecCC----------CHH-----------
Confidence                                                  011  1346999987544          121           


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCeeEEEEEec
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFV  331 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~g~~~vk~~ed~  331 (496)
                                ..+++....++++|.+.+.+.--.|+..+.+.|++.||..+++.|-+
T Consensus       185 ----------~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~~i~~~E~l  231 (266)
T d1o54a_         185 ----------NYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVWESL  231 (266)
T ss_dssp             ----------GTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEEECCC
T ss_pred             ----------HHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCceeEEEEEEE
Confidence                      23566677888999988777767889999999999999999988754

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=4.3e-10  Score=105.32  Aligned_cols=77  Identities=17%  Similarity=0.208  Sum_probs=63.8

Q ss_pred             CCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCc
Q 010968           89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL  168 (496)
Q Consensus        89 P~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~r  168 (496)
                      |-....+.++.+++...         ...+|||||||+|.+...|+.+ .+++|+|+|+|+.+++.|+++++.++ +.++
T Consensus        16 p~~~~~~~~l~~~~~l~---------pg~~VLDiGCG~G~~~~~la~~-~~~~v~GvD~s~~~~~~ar~~~~~~g-l~~~   84 (245)
T d1nkva_          16 PFTEEKYATLGRVLRMK---------PGTRILDLGSGSGEMLCTWARD-HGITGTGIDMSSLFTAQAKRRAEELG-VSER   84 (245)
T ss_dssp             SCCHHHHHHHHHHTCCC---------TTCEEEEETCTTCHHHHHHHHH-TCCEEEEEESCHHHHHHHHHHHHHTT-CTTT
T ss_pred             CCCHHHHHHHHHHcCCC---------CCCEEEEEcCCCCHHHHHHHHh-cCCEEEEEecccchhhHHHHHHHHhh-cccc
Confidence            45677777888887642         2358999999999987777654 46899999999999999999999995 8899


Q ss_pred             EEEEEccC
Q 010968          169 IEIRKVDN  176 (496)
Q Consensus       169 I~~v~~d~  176 (496)
                      |+++.+|.
T Consensus        85 v~~~~~d~   92 (245)
T d1nkva_          85 VHFIHNDA   92 (245)
T ss_dssp             EEEEESCC
T ss_pred             chhhhhHH
Confidence            99998874

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.06  E-value=2.1e-09  Score=102.80  Aligned_cols=60  Identities=18%  Similarity=0.219  Sum_probs=52.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ..+|||||||+|.++..|+.+ ++++|+|+|+|+.+++.|+++.+..+ +.++|+++.+|..
T Consensus        68 ~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~i~~a~~~~~~~g-l~~~v~~~~~d~~  127 (282)
T d2o57a1          68 QAKGLDLGAGYGGAARFLVRK-FGVSIDCLNIAPVQNKRNEEYNNQAG-LADNITVKYGSFL  127 (282)
T ss_dssp             TCEEEEETCTTSHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHHT-CTTTEEEEECCTT
T ss_pred             CCEEEEeCCCCcHHHhhhhcc-CCcEEEEEeccchhhhhhhccccccc-ccccccccccccc
Confidence            469999999999998888765 57899999999999999999998885 8889999988743

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.06  E-value=1.5e-10  Score=106.08  Aligned_cols=59  Identities=17%  Similarity=0.072  Sum_probs=50.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||++||||++++..+.+ ...+|+++|+|++|++.+++|++.++ ..++++++..|.
T Consensus        42 ~~~vLDlfaGsG~~g~ea~sr-Ga~~v~~ve~~~~a~~~~~~N~~~~~-~~~~~~i~~~D~  100 (182)
T d2fhpa1          42 GGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITK-EPEKFEVRKMDA  100 (182)
T ss_dssp             SCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHT-CGGGEEEEESCH
T ss_pred             CCEEEEcccccccccceeeec-chhHHHHHHHHHHHHHHHHHHhhhhh-cccccccccccc
Confidence            468999999999998866553 23479999999999999999999885 778899998874

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.04  E-value=2.2e-10  Score=112.37  Aligned_cols=144  Identities=15%  Similarity=0.091  Sum_probs=89.3

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhc-----CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLL-----GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTG  189 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~-----~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~  189 (496)
                      ...+|+|.|||+|++...+..++.     ..+++|+|||+.+++.|+.|+..++ .  .+.+...|...           
T Consensus       117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~-~--~~~~~~~d~~~-----------  182 (328)
T d2f8la1         117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-Q--KMTLLHQDGLA-----------  182 (328)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-C--CCEEEESCTTS-----------
T ss_pred             CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh-h--hhhhhcccccc-----------
Confidence            346899999999999877765432     3479999999999999999998764 2  35555554221           


Q ss_pred             CccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccc--cCCCCcccC
Q 010968          190 KSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEA--GLNPKTSCG  267 (496)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea--~~eP~~al~  267 (496)
                                                                  .  ....+||+|||||||.......  .........
T Consensus       183 --------------------------------------------~--~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~  216 (328)
T d2f8la1         183 --------------------------------------------N--LLVDPVDVVISDLPVGYYPDDENAKTFELCREE  216 (328)
T ss_dssp             --------------------------------------------C--CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSS
T ss_pred             --------------------------------------------c--cccccccccccCCCCCCCccchhhhhcchhccc
Confidence                                                        0  0246899999999995432211  111111111


Q ss_pred             CCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCC----cCcHHHHHHHHHHcCCeeEEEEE
Q 010968          268 GTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGR----KSNLKFLISKLRKVGVTIVKTTE  329 (496)
Q Consensus       268 G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk----~s~l~~L~~~L~~~g~~~vk~~e  329 (496)
                      +.      ......|    +..+..+++++|+....+..    ....+.+++.|.+.+ ....++.
T Consensus       217 ~~------~~~~~~F----i~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~-~i~~ii~  271 (328)
T d2f8la1         217 GH------SFAHFLF----IEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNG-HIEGIIK  271 (328)
T ss_dssp             SC------EEHHHHH----HHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHE-EEEEEEE
T ss_pred             Cc------chHHHHH----HHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCC-cEEEEEE
Confidence            11      1123444    44555688888887666541    234667888777754 2334444

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.01  E-value=5.3e-09  Score=95.67  Aligned_cols=57  Identities=19%  Similarity=0.186  Sum_probs=47.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      +.+|||||||+|.....|+..  +.+++|+|+|+.+++.|+++++.++ . .+|+++.+|.
T Consensus        16 ~~rVLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~i~~A~~~~~~~~-~-~~i~~~~~d~   72 (231)
T d1vl5a_          16 NEEVLDVATGGGHVANAFAPF--VKKVVAFDLTEDILKVARAFIEGNG-H-QQVEYVQGDA   72 (231)
T ss_dssp             CCEEEEETCTTCHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTT-C-CSEEEEECCC
T ss_pred             cCEEEEecccCcHHHHHHHHh--CCEEEEEECCHHHHhhhhhcccccc-c-cccccccccc
Confidence            458999999999887777644  4689999999999999999998874 4 4699988864

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=98.96  E-value=8.5e-09  Score=95.52  Aligned_cols=57  Identities=19%  Similarity=0.216  Sum_probs=48.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...|+..  ..+++|+|+|+.+++.|++++..++ + +++.++.+|.
T Consensus        17 ~~rILDiGcGtG~~~~~la~~--~~~v~gvD~S~~~l~~A~~~~~~~~-~-~~~~~~~~d~   73 (234)
T d1xxla_          17 EHRVLDIGAGAGHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKG-V-ENVRFQQGTA   73 (234)
T ss_dssp             TCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHHT-C-CSEEEEECBT
T ss_pred             CCEEEEeCCcCcHHHHHHHHh--CCeEEEEeCChhhhhhhhhhhcccc-c-cccccccccc
Confidence            358999999999998888754  4689999999999999999998874 5 4699988874

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.96  E-value=2.8e-09  Score=102.66  Aligned_cols=74  Identities=20%  Similarity=0.215  Sum_probs=57.4

Q ss_pred             HhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEE
Q 010968           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIE  170 (496)
Q Consensus        92 ~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~  170 (496)
                      .+|+.++.+.+..        -.++.+|||||||+|.++..|+...+ +.+|+|+|+|+.+++.|++|+...+ +  +++
T Consensus        12 ~d~l~~l~~~~~~--------~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~-~--~~~   80 (281)
T d2gh1a1          12 DDYVSFLVNTVWK--------ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP-Y--DSE   80 (281)
T ss_dssp             HHHHHHHHHTTSC--------CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS-S--EEE
T ss_pred             HHHHHHHHHHHhc--------cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc-c--ccc
Confidence            4566666554322        12467999999999999888887666 5899999999999999999998764 3  588


Q ss_pred             EEEccC
Q 010968          171 IRKVDN  176 (496)
Q Consensus       171 ~v~~d~  176 (496)
                      ++..|.
T Consensus        81 f~~~d~   86 (281)
T d2gh1a1          81 FLEGDA   86 (281)
T ss_dssp             EEESCT
T ss_pred             cccccc
Confidence            887764

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=4.9e-09  Score=96.72  Aligned_cols=131  Identities=10%  Similarity=0.041  Sum_probs=89.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ..+|||||||+|-+...|+... ..+|+|+|+|+.+++.|++++...+ . ..++++.+|..+                 
T Consensus        61 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~ak~~~~~~~-~-~~~~f~~~d~~~-----------------  120 (222)
T d2ex4a1          61 TSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEG-K-RVRNYFCCGLQD-----------------  120 (222)
T ss_dssp             CSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGG-G-GEEEEEECCGGG-----------------
T ss_pred             CCEEEEeccCCCHhhHHHHHhc-CCEEEEeecCHHHhhcccccccccc-c-cccccccccccc-----------------
Confidence            4689999999998866665443 3589999999999999999987763 3 457888876321                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                                                         +    ....++||+|+|+==+..-.                    
T Consensus       121 -----------------------------------~----~~~~~~fD~I~~~~~l~h~~--------------------  141 (222)
T d2ex4a1         121 -----------------------------------F----TPEPDSYDVIWIQWVIGHLT--------------------  141 (222)
T ss_dssp             -----------------------------------C----CCCSSCEEEEEEESCGGGSC--------------------
T ss_pred             -----------------------------------c----ccccccccccccccccccch--------------------
Confidence                                               0    01246899999964222100                    


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEe--CCc------------CcHHHHHHHHHHcCCeeEEEEE
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMV--GRK------------SNLKFLISKLRKVGVTIVKTTE  329 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmv--Gk~------------s~l~~L~~~L~~~g~~~vk~~e  329 (496)
                         . .-+..++++...+++++|++....  ...            ...+.+.+++.+.|+..++..+
T Consensus       142 ---~-~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~  205 (222)
T d2ex4a1         142 ---D-QHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEER  205 (222)
T ss_dssp             ---H-HHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred             ---h-hhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEE
Confidence               0 113456677777888888775431  111            1478899999999998777543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.91  E-value=2.6e-09  Score=99.04  Aligned_cols=73  Identities=21%  Similarity=0.330  Sum_probs=56.4

Q ss_pred             hHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEE
Q 010968           93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIR  172 (496)
Q Consensus        93 nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v  172 (496)
                      .-+.++.+++.....      ....+|||||||+|.+...|+..  +.+++|+|+|+.|++.|++++..++ +  +|+++
T Consensus        25 ~~~~~~~~~~~~~~~------~~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~~-~--~i~~~   93 (251)
T d1wzna1          25 AEIDFVEEIFKEDAK------REVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERN-L--KIEFL   93 (251)
T ss_dssp             HHHHHHHHHHHHTCS------SCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT-C--CCEEE
T ss_pred             HHHHHHHHHHHHhcC------CCCCEEEEeCCCCCccchhhccc--ceEEEEEeecccccccccccccccc-c--cchhe
Confidence            345567777754321      23458999999999998887753  5799999999999999999998874 4  58888


Q ss_pred             EccC
Q 010968          173 KVDN  176 (496)
Q Consensus       173 ~~d~  176 (496)
                      .+|.
T Consensus        94 ~~d~   97 (251)
T d1wzna1          94 QGDV   97 (251)
T ss_dssp             ESCG
T ss_pred             ehhh
Confidence            8763

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.90  E-value=7.4e-09  Score=93.85  Aligned_cols=57  Identities=18%  Similarity=0.225  Sum_probs=47.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      +.+|||||||+|-....|+.+  +++|+|+|+|+.+++.|+++++..+ ++ .+++...|.
T Consensus        31 ~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~-~~-~~~~~~~d~   87 (198)
T d2i6ga1          31 PGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEG-LD-NLQTDLVDL   87 (198)
T ss_dssp             SCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT-CT-TEEEEECCT
T ss_pred             CCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhcc-cc-chhhhheec
Confidence            458999999999988888754  6899999999999999999998874 54 577776664

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.89  E-value=3.8e-09  Score=98.46  Aligned_cols=56  Identities=16%  Similarity=0.059  Sum_probs=46.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      +.+|||||||+|.+...|+.+  +.+++|+|+|+.||+.|++++..++ +  +|+++.+|.
T Consensus        38 ~~~vLDiGCG~G~~~~~l~~~--g~~v~GvD~S~~ml~~A~~~~~~~~-~--~v~~~~~d~   93 (246)
T d1y8ca_          38 FDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQG-L--KPRLACQDI   93 (246)
T ss_dssp             TTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTT-C--CCEEECCCG
T ss_pred             CCeEEEEeCcCCHHHHHHHHh--CCccEeeccchhhhhhccccccccC-c--cceeeccch
Confidence            468999999999987777654  5689999999999999999988774 4  488887763

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.88  E-value=6.6e-09  Score=99.83  Aligned_cols=62  Identities=23%  Similarity=0.352  Sum_probs=52.5

Q ss_pred             cHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC
Q 010968           91 RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP  163 (496)
Q Consensus        91 R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~  163 (496)
                      +..|..|+.+++...         ...+|||||||+|.++..|+.+  +++|+|+|+|+.||+.|+++...++
T Consensus        41 ~~~~~~~l~~~l~~~---------~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~  102 (292)
T d1xvaa_          41 TAEYKAWLLGLLRQH---------GCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRR  102 (292)
T ss_dssp             CHHHHHHHHHHHHHT---------TCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhhc---------CCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcc
Confidence            367889999998752         2358999999999998888764  6899999999999999999987763

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.83  E-value=4.8e-09  Score=94.86  Aligned_cols=56  Identities=25%  Similarity=0.316  Sum_probs=45.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      +.+|||||||+|.+...|+.  .+++|+|+|+|+.+++.|++++...+   ..+.++..|.
T Consensus        38 ~~~ILDiGcG~G~~~~~la~--~~~~v~giD~S~~~i~~ak~~~~~~~---~~~~~~~~d~   93 (226)
T d1ve3a1          38 RGKVLDLACGVGGFSFLLED--YGFEVVGVDISEDMIRKAREYAKSRE---SNVEFIVGDA   93 (226)
T ss_dssp             CCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTT---CCCEEEECCT
T ss_pred             CCEEEEECCCcchhhhhHhh--hhcccccccccccchhhhhhhhcccc---cccccccccc
Confidence            35899999999999887764  47899999999999999999987653   3466666653

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=3.6e-08  Score=97.94  Aligned_cols=136  Identities=14%  Similarity=0.127  Sum_probs=97.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCC---------CCCCcEEEEEccCCCCCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNP---------HISELIEIRKVDNSESTPSIQE  185 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~---------~L~~rI~~v~~d~~~~~p~~~~  185 (496)
                      ..+|||+|||||++...||... ++-+|+++|+++++++.|++|++..+         ...+++.++..|...       
T Consensus        99 G~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~-------  171 (324)
T d2b25a1          99 GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISG-------  171 (324)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTC-------
T ss_pred             CCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhh-------
Confidence            4589999999999999998875 56799999999999999999998531         134568887776432       


Q ss_pred             cccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcc
Q 010968          186 SLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTS  265 (496)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~a  265 (496)
                                                                   ...++  ....||.|+..=|          +|.. 
T Consensus       172 ---------------------------------------------~~~~~--~~~~fD~V~LD~p----------~P~~-  193 (324)
T d2b25a1         172 ---------------------------------------------ATEDI--KSLTFDAVALDML----------NPHV-  193 (324)
T ss_dssp             ---------------------------------------------CC---------EEEEEECSS----------STTT-
T ss_pred             ---------------------------------------------ccccc--CCCCcceEeecCc----------CHHH-
Confidence                                                         01111  2357999987432          2221 


Q ss_pred             cCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHc--CCeeEEEEEecCCCeeEEE
Q 010968          266 CGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKV--GVTIVKTTEFVQGQTCRWG  339 (496)
Q Consensus       266 l~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~~--g~~~vk~~ed~qG~t~Rw~  339 (496)
                                          .|.+....++++|++.+.+.--+|+..+++.|++.  +|..+++.|-++   +.|-
T Consensus       194 --------------------~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~~~f~~i~~~E~~~---R~w~  246 (324)
T d2b25a1         194 --------------------TLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCEKISEVIV---RDWL  246 (324)
T ss_dssp             --------------------THHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEEEEECCCC---CCEE
T ss_pred             --------------------HHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHHcCCCceeeEEEEEEe---eeeE
Confidence                                24566678899999988888778899999999864  688888888663   5664

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.82  E-value=3.6e-08  Score=93.12  Aligned_cols=59  Identities=15%  Similarity=0.138  Sum_probs=53.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.....++.+.|+.+++++|+ +++++.|++++...+ +.++|+++.+|.
T Consensus        81 ~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~-~~~rv~~~~~D~  139 (253)
T d1tw3a2          81 VRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG-LSDRVDVVEGDF  139 (253)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT-CTTTEEEEECCT
T ss_pred             CCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhh-cccchhhccccc
Confidence            46899999999999999999999999999998 679999999999885 888999998874

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.80  E-value=3.5e-08  Score=95.51  Aligned_cols=129  Identities=13%  Similarity=0.096  Sum_probs=97.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHC-CCCCCcEEEEEccCCCCCCcccccccCCccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSN-PHISELIEIRKVDNSESTPSIQESLTGKSVQ  193 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N-~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~  193 (496)
                      ..+|||+|||||.+...||... |+-+++++|+++++++.|++|++.. +...+++.++.+|..+               
T Consensus        97 G~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~---------------  161 (264)
T d1i9ga_          97 GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD---------------  161 (264)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG---------------
T ss_pred             CCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccc---------------
Confidence            4689999999999999998875 6779999999999999999999863 1234678887766321               


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcc
Q 010968          194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM  273 (496)
Q Consensus       194 ~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Em  273 (496)
                                                             .++  +++.||.|+++=|          +|..         
T Consensus       162 ---------------------------------------~~~--~~~~fDaV~ldlp----------~P~~---------  181 (264)
T d1i9ga_         162 ---------------------------------------SEL--PDGSVDRAVLDML----------APWE---------  181 (264)
T ss_dssp             ---------------------------------------CCC--CTTCEEEEEEESS----------CGGG---------
T ss_pred             ---------------------------------------ccc--cCCCcceEEEecC----------CHHH---------
Confidence                                                   001  2467999987421          2221         


Q ss_pred             cccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHH-cCCeeEEEEEec
Q 010968          274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRK-VGVTIVKTTEFV  331 (496)
Q Consensus       274 v~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L~~-~g~~~vk~~ed~  331 (496)
                                  .+++....++++|++.+.+.--+|+..+++.|+. .+|..+++.|-+
T Consensus       182 ------------~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~~i~~~E~l  228 (264)
T d1i9ga_         182 ------------VLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPRAWETL  228 (264)
T ss_dssp             ------------GHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCCCEEECCC
T ss_pred             ------------HHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCeecceEEEEE
Confidence                        2455667888999998888878899999999975 568888888866

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.79  E-value=4.1e-08  Score=92.75  Aligned_cols=57  Identities=9%  Similarity=-0.130  Sum_probs=48.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.....|+...++-+|+|+|+|+.+++.|+++++.++    .+..+..+.
T Consensus        75 G~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~----ni~~i~~d~  131 (230)
T d1g8sa_          75 DSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE----NIIPILGDA  131 (230)
T ss_dssp             TCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCT----TEEEEECCT
T ss_pred             CCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhc----ccceEEEee
Confidence            458999999999998888887788899999999999999999987653    456666653

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.79  E-value=6.5e-08  Score=91.92  Aligned_cols=129  Identities=11%  Similarity=0.045  Sum_probs=87.3

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ...+|||+|||+|-+...|+.... .+|+|+|+++.+++.|+++....    ..++++.++..+                
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~~-~~v~~vD~s~~~l~~a~~~~~~~----~~~~~~~~d~~~----------------  151 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKLY-ATTDLLEPVKHMLEEAKRELAGM----PVGKFILASMET----------------  151 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHC-SEEEEEESCHHHHHHHHHHTTTS----SEEEEEESCGGG----------------
T ss_pred             CCCeEEEecccCChhhHHHHhhcC-ceEEEEcCCHHHHHhhhcccccc----ccceeEEccccc----------------
Confidence            456899999999998877766554 48999999999999999887543    247777765321                


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                           +   ....++||+|+|+-.+..-.+                  
T Consensus       152 -------------------------------------~---~~~~~~fD~I~~~~vl~hl~d------------------  173 (254)
T d1xtpa_         152 -------------------------------------A---TLPPNTYDLIVIQWTAIYLTD------------------  173 (254)
T ss_dssp             -------------------------------------C---CCCSSCEEEEEEESCGGGSCH------------------
T ss_pred             -------------------------------------c---ccCCCccceEEeeccccccch------------------
Confidence                                                 0   012468999999886643211                  


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEEEEE--eCC-------------cCcHHHHHHHHHHcCCeeEEEE
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWYTSM--VGR-------------KSNLKFLISKLRKVGVTIVKTT  328 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwftsm--vGk-------------~s~l~~L~~~L~~~g~~~vk~~  328 (496)
                           .+ +.+++++....++++|++...  +..             ..+.+.+.+++++.|+..++..
T Consensus       174 -----~d-~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~  236 (254)
T d1xtpa_         174 -----AD-FVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEA  236 (254)
T ss_dssp             -----HH-HHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEE
T ss_pred             -----hh-hHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEE
Confidence                 11 234556666677777776441  110             1146788999999999877643

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.76  E-value=3.6e-08  Score=91.07  Aligned_cols=52  Identities=12%  Similarity=0.035  Sum_probs=41.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      +.+|||||||+|.+...|+.+  +++|+|+|+|+++++.|+++..      +.+.++.++
T Consensus        21 ~~~VLDiGcG~G~~~~~l~~~--g~~v~giD~s~~~i~~a~~~~~------~~~~~~~~~   72 (225)
T d2p7ia1          21 PGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLK------DGITYIHSR   72 (225)
T ss_dssp             SSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSC------SCEEEEESC
T ss_pred             CCcEEEEeCCCcHHHHHHHHc--CCeEEEEeCcHHHhhhhhcccc------ccccccccc
Confidence            458999999999987776543  5789999999999999987643      247887765

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.72  E-value=1.3e-07  Score=89.87  Aligned_cols=59  Identities=10%  Similarity=0.099  Sum_probs=53.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+...|+.++|+.+++++|+ +++++.|+++++..+ +.++|+++.+|.
T Consensus        82 ~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~-~~~ri~~~~~d~  140 (256)
T d1qzza2          82 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAG-LADRVTVAEGDF  140 (256)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT-CTTTEEEEECCT
T ss_pred             CCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcC-Ccceeeeeeeec
Confidence            35899999999999999999999999999998 789999999999885 889999987764

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.71  E-value=6.6e-08  Score=89.82  Aligned_cols=59  Identities=14%  Similarity=0.240  Sum_probs=53.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      +..|||||||+|.....||...|++.++|+|+++.++..|.++++.++ +. +|.++.+|.
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~-l~-Nv~~~~~Da   88 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE-AQ-NVKLLNIDA   88 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC-CS-SEEEECCCG
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHh-cc-Cchhcccch
Confidence            357999999999999999999999999999999999999999999985 64 699988874

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.71  E-value=2.8e-07  Score=89.92  Aligned_cols=58  Identities=14%  Similarity=0.115  Sum_probs=50.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ..+|||||||.|..+.-++.+. +++|+|+++|++.++.|++.++..+ +.+++.+...|
T Consensus        62 G~~VLDiGCG~G~~~~~~a~~~-g~~v~git~s~~q~~~a~~~~~~~~-l~~~v~~~~~d  119 (291)
T d1kpia_          62 GMTLLDIGCGWGSTMRHAVAEY-DVNVIGLTLSENQYAHDKAMFDEVD-SPRRKEVRIQG  119 (291)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHSC-CSSCEEEEECC
T ss_pred             CCEEEEecCcchHHHHHHHHhc-CcceeeccchHHHHHHHHHHHHhhc-cchhhhhhhhc
Confidence            4689999999999877777664 6899999999999999999999885 88888887664

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.71  E-value=2.9e-08  Score=90.34  Aligned_cols=87  Identities=14%  Similarity=0.147  Sum_probs=56.0

Q ss_pred             CcEEEecCCC-eeCCCCCc--HhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHH
Q 010968           74 GLNWWIPDGQ-LCPTVPNR--SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV  150 (496)
Q Consensus        74 GL~~~Vp~g~-LiPrvP~R--~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~  150 (496)
                      |..+..|.+. +=|+ +.|  +....|+..-+            ...++||+.||||++++-.+.+ ...+++.||.|..
T Consensus        12 g~~l~~~~~~~~RPt-~~~vrealFn~l~~~~------------~~~~vLDlFaGsG~~glEalSR-GA~~v~fVE~~~~   77 (183)
T d2ifta1          12 GRKLPVLNSEGLRPT-GDRVKETLFNWLMPYI------------HQSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKT   77 (183)
T ss_dssp             TCEEECC----------CHHHHHHHHHHHHHH------------TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHH
T ss_pred             CCEecCCCCCCcCcC-cHHHHHHHHHHhhhhc------------ccceEeecccCccceeeeeeee-cceeeEEeecccc
Confidence            6677777763 4444 333  33444443322            2358999999999999887654 3358999999999


Q ss_pred             HHHHHHHHHHHCCCCCC-cEEEEEcc
Q 010968          151 ALEWAEKNVKSNPHISE-LIEIRKVD  175 (496)
Q Consensus       151 AL~~A~~N~~~N~~L~~-rI~~v~~d  175 (496)
                      ++++.++|++..+ +++ ...++..|
T Consensus        78 a~~~ik~Ni~~l~-~~~~~~~~~~~d  102 (183)
T d2ifta1          78 VANQLKKNLQTLK-CSSEQAEVINQS  102 (183)
T ss_dssp             HHHHHHHHHHHTT-CCTTTEEEECSC
T ss_pred             hhhhHhhHHhhhc-cccccccccccc
Confidence            9999999999874 543 45555443

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=7e-08  Score=93.73  Aligned_cols=58  Identities=16%  Similarity=0.230  Sum_probs=45.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.+++.+|+. ...+|+|+|+++.++. |++++..|+ +.++|+++.++.
T Consensus        36 ~~~VLDiGcG~G~lsl~aa~~-Ga~~V~aid~s~~~~~-a~~~~~~~~-~~~~i~~~~~~~   93 (311)
T d2fyta1          36 DKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQ-AMDIIRLNK-LEDTITLIKGKI   93 (311)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHH-HHHHHHHTT-CTTTEEEEESCT
T ss_pred             cCEEEEECCCCCHHHHHHHHc-CCCEEEEEeCHHHHHH-HHHHHHHhC-CCccceEEEeeH
Confidence            458999999999887666543 3358999999998764 667777774 788999998874

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.67  E-value=2.3e-07  Score=86.15  Aligned_cols=57  Identities=11%  Similarity=-0.005  Sum_probs=48.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.....|+...++.+|+|+|+++.+++.|+++++..+    .+.++..+.
T Consensus        57 g~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~----ni~~i~~d~  113 (209)
T d1nt2a_          57 DERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN----NIIPLLFDA  113 (209)
T ss_dssp             SCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS----SEEEECSCT
T ss_pred             CCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC----CceEEEeec
Confidence            358999999999988888877787799999999999999999998763    477777664

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.66  E-value=6.1e-08  Score=94.71  Aligned_cols=59  Identities=19%  Similarity=0.297  Sum_probs=47.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ..+|||||||+|.+++.+++ ....+|+|+|.++. ...|+++++.|+ +.++|+++.++..
T Consensus        34 ~~~VLDiGcG~G~ls~~aa~-~Ga~~V~avd~s~~-~~~a~~~~~~n~-~~~~v~~~~~~~~   92 (316)
T d1oria_          34 DKVVLDVGSGTGILCMFAAK-AGARKVIGIECSSI-SDYAVKIVKANK-LDHVVTIIKGKVE   92 (316)
T ss_dssp             TCEEEEETCTTSHHHHHHHH-TTCSEEEEEECSTT-HHHHHHHHHHTT-CTTTEEEEESCTT
T ss_pred             cCEEEEEecCCcHHHHHHHH-hCCCEEEEEcCcHH-HhhhhhHHHHhC-CccccceEeccHH
Confidence            35799999999988665554 33358999999975 578889999995 8899999988743

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.65  E-value=3e-08  Score=93.21  Aligned_cols=59  Identities=15%  Similarity=0.099  Sum_probs=47.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      +.+|||||||+|.....++.. ...+|+|+|+|+.+++.|++.++..+ ...++.++.+|.
T Consensus        25 ~~~VLDlGCG~G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~~~-~~~~v~f~~~D~   83 (252)
T d1ri5a_          25 GDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMK-RRFKVFFRAQDS   83 (252)
T ss_dssp             TCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSC-CSSEEEEEESCT
T ss_pred             cCEEEEecccCcHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHhcC-CCcceEEEEcch
Confidence            468999999999876666543 34589999999999999999887764 566788888874

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=1.2e-07  Score=92.81  Aligned_cols=58  Identities=21%  Similarity=0.245  Sum_probs=47.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.++..++ +....+|+|+|.++ +++.|+++++.|+ +.++|+++.++.
T Consensus        39 ~~~VLDlGcGtG~ls~~aa-~~Ga~~V~avd~s~-~~~~a~~~~~~~~-~~~~i~~i~~~~   96 (328)
T d1g6q1_          39 DKIVLDVGCGTGILSMFAA-KHGAKHVIGVDMSS-IIEMAKELVELNG-FSDKITLLRGKL   96 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHH-HTCCSEEEEEESST-HHHHHHHHHHHTT-CTTTEEEEESCT
T ss_pred             cCEEEEeCCCCCHHHHHHH-HhCCCEEEEEeCCH-HHHHHHHHHHHhC-ccccceEEEeeh
Confidence            4589999999998876554 44445899999997 6789999999995 888999998874

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=5.6e-08  Score=95.82  Aligned_cols=89  Identities=15%  Similarity=0.144  Sum_probs=65.9

Q ss_pred             cCcEEEecCCCeeCCCCCc---HhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcH
Q 010968           73 HGLNWWIPDGQLCPTVPNR---SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (496)
Q Consensus        73 fGL~~~Vp~g~LiPrvP~R---~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~  149 (496)
                      .|+.|.++++...-.  |+   +.++.++.+.+..         ....++||+.||+|.+++.|+..  ..+|+|+|+++
T Consensus       178 ~g~~~~i~p~sFfQ~--N~~~~e~l~~~v~~~~~~---------~~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~  244 (358)
T d1uwva2         178 NGLRLTFSPRDFIQV--NAGVNQKMVARALEWLDV---------QPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVP  244 (358)
T ss_dssp             TTEEEECCSSSCCCS--BHHHHHHHHHHHHHHHTC---------CTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCH
T ss_pred             CCEEEEECCchhhcc--chhhhhHHHHHHHHhhcc---------CCCceEEEecccccccchhcccc--ccEEEeccCcH
Confidence            456677776665543  44   3445555555542         13458999999999999888753  46899999999


Q ss_pred             HHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          150 VALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       150 ~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      +|++.|++|++.|+ +. +++++.++.
T Consensus       245 ~ai~~A~~na~~n~-i~-n~~~~~~~~  269 (358)
T d1uwva2         245 ALVEKGQQNARLNG-LQ-NVTFYHENL  269 (358)
T ss_dssp             HHHHHHHHHHHHTT-CC-SEEEEECCT
T ss_pred             HHHHHHHHhHHhcc-cc-cceeeecch
Confidence            99999999999995 64 688888764

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=8.7e-08  Score=89.20  Aligned_cols=69  Identities=12%  Similarity=-0.013  Sum_probs=51.3

Q ss_pred             hHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEE
Q 010968           93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIR  172 (496)
Q Consensus        93 nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v  172 (496)
                      .|.+.+.+.+..          ...+|||||||+|..+..++.. ...+++|+|+|+.+++.|+++.+..+   .++.++
T Consensus        41 ~~~~~la~~~~~----------~g~~VLdIGcG~G~~a~~~a~~-~~~~v~~id~s~~~~~~a~~~~~~~~---~~~~~~  106 (229)
T d1zx0a1          41 PYMHALAAAASS----------KGGRVLEVGFGMAIAASKVQEA-PIDEHWIIECNDGVFQRLRDWAPRQT---HKVIPL  106 (229)
T ss_dssp             HHHHHHHHHHTT----------TCEEEEEECCTTSHHHHHHHTS-CEEEEEEEECCHHHHHHHHHHGGGCS---SEEEEE
T ss_pred             HHHHHHHHhhcc----------CCCeEEEeeccchHHHHHHHHc-CCCeEEEeCCCHHHHHHHHHHhhhcc---cccccc
Confidence            455656665542          2458999999999887777654 34589999999999999999987753   346666


Q ss_pred             Ecc
Q 010968          173 KVD  175 (496)
Q Consensus       173 ~~d  175 (496)
                      ..+
T Consensus       107 ~~~  109 (229)
T d1zx0a1         107 KGL  109 (229)
T ss_dssp             ESC
T ss_pred             ccc
Confidence            554

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.58  E-value=1.2e-07  Score=86.48  Aligned_cols=42  Identities=24%  Similarity=0.256  Sum_probs=36.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHH
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNV  159 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~  159 (496)
                      +.+|||||||+|..+..|+.  .+++|+|+|+|+.+++.|++|.
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~--~~~~v~giD~s~~~l~~a~~~~   84 (246)
T d2avna1          43 PCRVLDLGGGTGKWSLFLQE--RGFEVVLVDPSKEMLEVAREKG   84 (246)
T ss_dssp             CCEEEEETCTTCHHHHHHHT--TTCEEEEEESCHHHHHHHHHHT
T ss_pred             CCEEEEECCCCchhcccccc--cceEEEEeeccccccccccccc
Confidence            45899999999999887764  3789999999999999999863

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=7.8e-08  Score=91.84  Aligned_cols=55  Identities=20%  Similarity=0.244  Sum_probs=46.3

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ++.+|||||||+|.+...|+...++++++|+|+|+.+++.|+++.       .++.++.+|.
T Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~-------~~~~~~~~d~  138 (268)
T d1p91a_          84 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-------PQVTFCVASS  138 (268)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-------TTSEEEECCT
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-------ccccceeeeh
Confidence            456899999999999888888888999999999999999998652       2477777764

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.57  E-value=4.3e-07  Score=92.16  Aligned_cols=49  Identities=14%  Similarity=0.010  Sum_probs=39.5

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhc-------------CCeeEEecCcHHHHHHHHHHHHHCC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLL-------------GWSFVGSDMTDVALEWAEKNVKSNP  163 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~-------------~~~v~avDIs~~AL~~A~~N~~~N~  163 (496)
                      ...+|+|-+||||...+.+.....             ...++|+|+++.+..+|+.|...++
T Consensus       162 ~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g  223 (425)
T d2okca1         162 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHG  223 (425)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTT
T ss_pred             ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcC
Confidence            346899999999988666655432             2358999999999999999998875

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.53  E-value=7e-07  Score=86.81  Aligned_cols=59  Identities=10%  Similarity=0.034  Sum_probs=51.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||.|..++-++.+. +++|+|+++|++-++.|++.++..+ +.+++++...|.
T Consensus        63 G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g-~~~~v~~~~~d~  121 (285)
T d1kpga_          63 GMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSE-NLRSKRVLLAGW  121 (285)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCC-CCSCEEEEESCG
T ss_pred             CCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhh-hhhhhHHHHhhh
Confidence            4689999999999887777765 7999999999999999999998885 888999987763

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.52  E-value=3e-07  Score=85.29  Aligned_cols=58  Identities=19%  Similarity=0.166  Sum_probs=49.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ..+|||||||+|.++..|+... +..+|+++|+++++++.|++|++..+ + .++.++.+|
T Consensus        76 g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~-~-~n~~~~~~d  134 (213)
T d1dl5a1          76 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG-I-ENVIFVCGD  134 (213)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT-C-CSEEEEESC
T ss_pred             cceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhc-c-cccccccCc
Confidence            4589999999999988888766 46799999999999999999999874 5 457776665

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.52  E-value=7.1e-07  Score=86.28  Aligned_cols=58  Identities=12%  Similarity=0.067  Sum_probs=48.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ..+|||||||.|..+..++ +..+.+|+|+|+|++.++.|++.++..+ +..++.+...|
T Consensus        53 g~~VLDiGCG~G~~a~~~a-~~~g~~v~gi~ls~~q~~~a~~~~~~~~-l~~~~~~~~~d  110 (280)
T d2fk8a1          53 GMTLLDIGCGWGTTMRRAV-ERFDVNVIGLTLSKNQHARCEQVLASID-TNRSRQVLLQG  110 (280)
T ss_dssp             TCEEEEESCTTSHHHHHHH-HHHCCEEEEEESCHHHHHHHHHHHHTSC-CSSCEEEEESC
T ss_pred             CCEEEEecCCchHHHHHHH-HhCceeEEEecchHHHHHHHHHHHHhhc-cccchhhhhhh
Confidence            4589999999998876655 4557899999999999999999999885 88888876654

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.52  E-value=1.2e-06  Score=82.58  Aligned_cols=57  Identities=11%  Similarity=-0.022  Sum_probs=46.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ..+|||||||+|.....|+... +.-+|+|+|+++.+++.|+++++..+    .+..+..|.
T Consensus        74 G~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~----~~~~i~~d~  131 (227)
T d1g8aa_          74 GKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR----NIVPILGDA  131 (227)
T ss_dssp             TCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT----TEEEEECCT
T ss_pred             CCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC----CceEEEEEC
Confidence            4589999999999988888765 56899999999999999999987653    355555553

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.51  E-value=6.5e-07  Score=82.96  Aligned_cols=59  Identities=17%  Similarity=0.270  Sum_probs=53.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ...+||||||+|-....+|...|+..++|+|+++.++..|.+.+..++ ++ +|.++.+|.
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~-l~-Ni~~~~~da   90 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG-VP-NIKLLWVDG   90 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC-CS-SEEEEECCS
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhc-cc-cceeeecCH
Confidence            357999999999999999999999999999999999999999998885 64 699998874

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=3.4e-07  Score=84.62  Aligned_cols=68  Identities=24%  Similarity=0.188  Sum_probs=47.0

Q ss_pred             HhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC
Q 010968           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP  163 (496)
Q Consensus        92 ~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~  163 (496)
                      ..+++|+...+.....+   ...+..+|||||||+|...+.++.. ...+|+|+|+|+.+++.|+++++.++
T Consensus        31 ~~~~~~~~~~~~~~~~~---~~~~g~~vLDlGcG~G~~~~~~~~~-~~~~v~giD~S~~~i~~a~~~~~~~~   98 (257)
T d2a14a1          31 AEMLKFNLECLHKTFGP---GGLQGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKKEP   98 (257)
T ss_dssp             HHHHHHHHHHHHHHHST---TSCCEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHHHhcc---cCCCCCEEEEECCCCCHhHHHHhcc-ccCcEEEecCCHHHHHHHHHHHhhcc
Confidence            45667776655432111   1123468999999999765555433 33589999999999999999998763

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.49  E-value=1.5e-07  Score=85.37  Aligned_cols=39  Identities=13%  Similarity=0.180  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHH
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALE  153 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~  153 (496)
                      ...+|||.|||+|.+...+..+.+ ...++|+|+++.+++
T Consensus        19 ~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~   58 (223)
T d2ih2a1          19 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD   58 (223)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC
T ss_pred             CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh
Confidence            346899999999988766665555 468999999987643

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.48  E-value=8.4e-08  Score=84.10  Aligned_cols=45  Identities=16%  Similarity=0.194  Sum_probs=39.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN  162 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N  162 (496)
                      +.+|||+|||+|-.+..|+.+  +++|+|+|+|+.+++.|++.++..
T Consensus        21 ~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~   65 (201)
T d1pjza_          21 GARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQ   65 (201)
T ss_dssp             TCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSC
T ss_pred             CCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccc
Confidence            468999999999998888754  899999999999999999998654

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=6.5e-07  Score=83.86  Aligned_cols=91  Identities=14%  Similarity=0.177  Sum_probs=63.7

Q ss_pred             cCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHh-cCCeeEEecCcHHH
Q 010968           73 HGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVA  151 (496)
Q Consensus        73 fGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~-~~~~v~avDIs~~A  151 (496)
                      .+..+.++.++-+.. |   -.+-.+.++|....       ....+|||||||+|.....|+... +..+|+++|+++++
T Consensus        45 ~D~~l~i~~~~~is~-P---~~~a~~le~L~~~l-------~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l  113 (224)
T d1i1na_          45 MDSPQSIGFQATISA-P---HMHAYALELLFDQL-------HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKEL  113 (224)
T ss_dssp             SSSCEEEETTEEECC-H---HHHHHHHHHTTTTS-------CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHH
T ss_pred             CCCCccccchhhhhh-h---HHHHHHHHHHhhcc-------CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHH
Confidence            344567777887776 3   22333444553221       124589999999998887777654 46799999999999


Q ss_pred             HHHHHHHHHHCCCCC----CcEEEEEcc
Q 010968          152 LEWAEKNVKSNPHIS----ELIEIRKVD  175 (496)
Q Consensus       152 L~~A~~N~~~N~~L~----~rI~~v~~d  175 (496)
                      ++.|++|+++.+ +.    .++.++.+|
T Consensus       114 ~~~a~~~l~~~~-~~~~~~~~~~~~~gD  140 (224)
T d1i1na_         114 VDDSVNNVRKDD-PTLLSSGRVQLVVGD  140 (224)
T ss_dssp             HHHHHHHHHHHC-THHHHTSSEEEEESC
T ss_pred             HHHHHHhccccC-cccccccceEEEEee
Confidence            999999998763 32    357777666

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.45  E-value=1.1e-06  Score=79.05  Aligned_cols=45  Identities=22%  Similarity=0.227  Sum_probs=34.7

Q ss_pred             CeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       117 ~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      .+|||||||+|-+...+      .+++|+|+|+.+++.|+++    +     ++++.+|.
T Consensus        38 ~~vLDiGcG~G~~~~~~------~~~~giD~s~~~~~~a~~~----~-----~~~~~~d~   82 (208)
T d1vlma_          38 GRGVEIGVGTGRFAVPL------KIKIGVEPSERMAEIARKR----G-----VFVLKGTA   82 (208)
T ss_dssp             SCEEEETCTTSTTHHHH------TCCEEEESCHHHHHHHHHT----T-----CEEEECBT
T ss_pred             CeEEEECCCCccccccc------ceEEEEeCChhhccccccc----c-----cccccccc
Confidence            37999999999764433      2578999999999999763    2     67777764

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=5.6e-07  Score=83.22  Aligned_cols=59  Identities=12%  Similarity=0.138  Sum_probs=47.1

Q ss_pred             HhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHH
Q 010968           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS  161 (496)
Q Consensus        92 ~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~  161 (496)
                      ..++.|+..++..         ....+|||+|||+|..+..||.  .+++|+|+|+|+.|++.|+++...
T Consensus        31 ~~l~~~~~~~l~~---------~~~~rvLd~GCG~G~~a~~LA~--~G~~V~gvD~S~~ai~~a~~~~~~   89 (229)
T d2bzga1          31 QLLKKHLDTFLKG---------KSGLRVFFPLCGKAVEMKWFAD--RGHSVVGVEISELGIQEFFTEQNL   89 (229)
T ss_dssp             HHHHHHHHHHHTT---------CCSCEEEETTCTTCTHHHHHHH--TTCEEEEECSCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCC---------CCCCEEEEeCCCCcHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHhhc
Confidence            4566677777653         1346899999999999888875  488999999999999999887654

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.33  E-value=2.5e-06  Score=79.78  Aligned_cols=87  Identities=15%  Similarity=0.250  Sum_probs=66.6

Q ss_pred             CcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHH
Q 010968           74 GLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALE  153 (496)
Q Consensus        74 GL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~  153 (496)
                      +..+.++.++.+.. |   -.+..+.++|...         ...+|||||||||..+.+|+. +.+.+|+++|++++.++
T Consensus        50 D~~l~i~~g~~is~-P---~~~a~ml~~L~l~---------~g~~VLeIGsGsGY~taila~-l~g~~V~~ie~~~~l~~  115 (215)
T d1jg1a_          50 DEPLPIPAGQTVSA-P---HMVAIMLEIANLK---------PGMNILEVGTGSGWNAALISE-IVKTDVYTIERIPELVE  115 (215)
T ss_dssp             SSCEECSTTCEECC-H---HHHHHHHHHHTCC---------TTCCEEEECCTTSHHHHHHHH-HHCSCEEEEESCHHHHH
T ss_pred             cCCcccchhhhhhh-h---hhHHHHHHhhccC---------ccceEEEecCCCChhHHHHHH-hhCceeEEEeccHHHHH
Confidence            45678889998887 3   3344445555421         245899999999999877765 44677999999999999


Q ss_pred             HHHHHHHHCCCCCCcEEEEEccC
Q 010968          154 WAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       154 ~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      .|++|++..+ + .++.++.+|.
T Consensus       116 ~a~~~l~~~g-~-~nv~~~~gd~  136 (215)
T d1jg1a_         116 FAKRNLERAG-V-KNVHVILGDG  136 (215)
T ss_dssp             HHHHHHHHTT-C-CSEEEEESCG
T ss_pred             HHHHHHHHcC-C-ceeEEEECcc
Confidence            9999999885 5 5799988874

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.24  E-value=3.7e-06  Score=79.01  Aligned_cols=81  Identities=20%  Similarity=0.137  Sum_probs=57.0

Q ss_pred             EEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHH
Q 010968           77 WWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAE  156 (496)
Q Consensus        77 ~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~  156 (496)
                      +.+..+.-++. |   .....+.+.|..         ....+|||||||+|.....|+..  ..+|+++|+++++++.|+
T Consensus        45 l~i~~g~~~~~-p---~~~a~ml~~L~l---------~~g~~VLdIG~GsGy~ta~La~l--~~~V~aiE~~~~~~~~A~  109 (224)
T d1vbfa_          45 LPILPGINTTA-L---NLGIFMLDELDL---------HKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYAS  109 (224)
T ss_dssp             EEEETTEEECC-H---HHHHHHHHHTTC---------CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHH
T ss_pred             cccCCCCceeh-h---hhHHHHHHHhhh---------cccceEEEecCCCCHHHHHHHHH--hcccccccccHHHHHHHH
Confidence            44556666665 2   222233444432         13458999999999988777653  468999999999999999


Q ss_pred             HHHHHCCCCCCcEEEEEccC
Q 010968          157 KNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       157 ~N~~~N~~L~~rI~~v~~d~  176 (496)
                      +|...+    .++.++.+|.
T Consensus       110 ~~~~~~----~nv~~~~~d~  125 (224)
T d1vbfa_         110 KLLSYY----NNIKLILGDG  125 (224)
T ss_dssp             HHHTTC----SSEEEEESCG
T ss_pred             HHHhcc----cccccccCch
Confidence            998754    3688888763

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=3.4e-06  Score=79.60  Aligned_cols=72  Identities=14%  Similarity=0.081  Sum_probs=47.6

Q ss_pred             cHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHH----hcC--CeeEEecCcHHHHHHHHHHHHHCC
Q 010968           91 RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGAS----LLG--WSFVGSDMTDVALEWAEKNVKSNP  163 (496)
Q Consensus        91 R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~----~~~--~~v~avDIs~~AL~~A~~N~~~N~  163 (496)
                      +..+..|+...+... +..........+|||||||+|.+...|+..    .++  +.++|+|+|+.+++.|+++++...
T Consensus        17 ~~~~~~~~~~~l~~~-l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~   94 (280)
T d1jqea_          17 HQCMQEFMDKKLPGI-IGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKIS   94 (280)
T ss_dssp             HHHHHHHHHHTHHHH-TTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHH-HHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcc
Confidence            344556666555431 111111223458999999999876666543    333  468999999999999999987653

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=98.18  E-value=5.3e-07  Score=86.56  Aligned_cols=62  Identities=18%  Similarity=0.061  Sum_probs=47.9

Q ss_pred             CCCeEEEEcCchhHHHHHHHHH---------------------------------------h-cCCeeEEecCcHHHHHH
Q 010968          115 DKVKGFDIGTGANCIYPLLGAS---------------------------------------L-LGWSFVGSDMTDVALEW  154 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~---------------------------------------~-~~~~v~avDIs~~AL~~  154 (496)
                      .+..++|-+||||.|.+-.+..                                       . ....++|.|+++++++.
T Consensus        50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~  129 (249)
T d1o9ga_          50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  129 (249)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence            3467999999999997664431                                       0 01357899999999999


Q ss_pred             H---HHHHHHCCCCCCcEEEEEccCC
Q 010968          155 A---EKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       155 A---~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      |   ++|++.-+ +.+.|.+...|..
T Consensus       130 A~~~r~n~~~Ag-l~~~i~i~~~d~f  154 (249)
T d1o9ga_         130 ARRLRERLTAEG-GALPCAIRTADVF  154 (249)
T ss_dssp             HHHHHHHHHHTT-SSCCEEEEECCTT
T ss_pred             HHHHHHHHHHcC-CCceeeeeecchh
Confidence            9   46898885 8899999988865

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=8.5e-06  Score=77.00  Aligned_cols=47  Identities=17%  Similarity=0.104  Sum_probs=36.8

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN  162 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N  162 (496)
                      ++.++||||||+|...++++.+. ..+|+|+|+|+.+++.|+++++..
T Consensus        54 ~g~~vLDiGcG~g~~~~~~~~~~-~~~v~~~D~S~~~i~~~~~~~~~~  100 (263)
T d2g72a1          54 SGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEE  100 (263)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTC
T ss_pred             CCcEEEEeccCCCHHHHHHhccc-CCeEEEEeCCHHHHHHHHHHHhcC
Confidence            45699999999996544444333 348999999999999999988654

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=6.8e-06  Score=85.50  Aligned_cols=48  Identities=13%  Similarity=0.028  Sum_probs=37.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc------------------CCeeEEecCcHHHHHHHHHHHHHCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL------------------GWSFVGSDMTDVALEWAEKNVKSNP  163 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~------------------~~~v~avDIs~~AL~~A~~N~~~N~  163 (496)
                      ..+|+|-+||||...+.......                  ...++|.|+++.+..+|+.|+-.++
T Consensus       165 ~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~  230 (524)
T d2ar0a1         165 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD  230 (524)
T ss_dssp             TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT
T ss_pred             chhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhc
Confidence            45899999999988665544321                  1258999999999999999998764

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.09  E-value=8.1e-06  Score=76.43  Aligned_cols=92  Identities=14%  Similarity=0.161  Sum_probs=60.9

Q ss_pred             cCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHh------cCCeeEEec
Q 010968           73 HGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL------LGWSFVGSD  146 (496)
Q Consensus        73 fGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~------~~~~v~avD  146 (496)
                      -+..+.+..++-+-. |  .-+ -.+.++|....       ....+|||||||||....+|+...      +..+|+++|
T Consensus        49 ~D~~lpi~~~~~is~-P--~~~-a~~l~~L~~~l-------~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE  117 (223)
T d1r18a_          49 MDAPQPIGGGVTISA-P--HMH-AFALEYLRDHL-------KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIE  117 (223)
T ss_dssp             BSSCEEEETTEEECC-H--HHH-HHHHHHTTTTC-------CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEE
T ss_pred             CCCCccccCCceeeh-h--hhH-HHHHHHHhhcc-------CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEe
Confidence            344566677776655 2  122 23344443211       124589999999999887776543      235899999


Q ss_pred             CcHHHHHHHHHHHHHCCCC----CCcEEEEEccC
Q 010968          147 MTDVALEWAEKNVKSNPHI----SELIEIRKVDN  176 (496)
Q Consensus       147 Is~~AL~~A~~N~~~N~~L----~~rI~~v~~d~  176 (496)
                      ++++.++.|++|+..++ +    -.+|.++.+|.
T Consensus       118 ~~~~l~~~a~~~l~~~~-~~~~~~~nv~~~~~d~  150 (223)
T d1r18a_         118 HQAELVRRSKANLNTDD-RSMLDSGQLLIVEGDG  150 (223)
T ss_dssp             SCHHHHHHHHHHHHHHH-HHHHHHTSEEEEESCG
T ss_pred             cCHHHHHHHHHhhhhcc-hhhcCccEEEEEeccc
Confidence            99999999999986541 1    13588888763

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.06  E-value=4.9e-06  Score=76.40  Aligned_cols=131  Identities=17%  Similarity=0.138  Sum_probs=91.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ...+||++||+|.....++.++|+.+++|+|+|++|++.|+++.+..   .+++.+++++..+                 
T Consensus        24 ~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~---~~r~~~~~~~f~~-----------------   83 (192)
T d1m6ya2          24 EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF---SDRVSLFKVSYRE-----------------   83 (192)
T ss_dssp             TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG---TTTEEEEECCGGG-----------------
T ss_pred             CCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc---cccccchhHHHhh-----------------
Confidence            45899999999999988888889999999999999999999999765   3689998875321                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                        +.                              .++...  ..++||.|+-.-++ ++..-         .+...    
T Consensus        84 --~~------------------------------~~~~~~--~~~~vdgIl~DlGv-Ss~Ql---------d~~~r----  115 (192)
T d1m6ya2          84 --AD------------------------------FLLKTL--GIEKVDGILMDLGV-STYQL---------KGENR----  115 (192)
T ss_dssp             --HH------------------------------HHHHHT--TCSCEEEEEEECSC-CHHHH---------HTSHT----
T ss_pred             --HH------------------------------HHHHHc--CCCCcceeeeccch-hHhhh---------hhhhc----
Confidence              00                              011111  13578888877655 22111         11122    


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHH--HHHHHHH
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKF--LISKLRK  319 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~--L~~~L~~  319 (496)
                         |+.|..+.+..+..+++++|-+...-  ..+++.  +...+++
T Consensus       116 ---~~~~~~~~L~~a~~~Lk~gG~l~ii~--f~s~Edr~vk~~f~~  156 (192)
T d1m6ya2         116 ---ELENLKEFLKKAEDLLNPGGRIVVIS--FHSLEDRIVKETFRN  156 (192)
T ss_dssp             ---HHHHHHHHHHHGGGGEEEEEEEEEEE--SSHHHHHHHHHHHHH
T ss_pred             ---cchhHHHHHHHHHHhcCCCCeeeeec--cccHHHHHHHHHHhh
Confidence               78999999999999999998876544  344443  4445544

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=97.95  E-value=9.5e-06  Score=76.56  Aligned_cols=57  Identities=12%  Similarity=0.103  Sum_probs=46.8

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ...+|||||+|.|.+-..|+..  ..+++|+|+|++.++.++++...+    .+++++.+|..
T Consensus        21 ~~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~~~~----~n~~i~~~D~l   77 (235)
T d1qama_          21 EHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVDH----DNFQVLNKDIL   77 (235)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTTC----CSEEEECCCGG
T ss_pred             CCCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHHhhcc----cchhhhhhhhh
Confidence            3468999999999998888754  468999999999999998876543    46899988753

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.4e-05  Score=77.53  Aligned_cols=74  Identities=15%  Similarity=0.124  Sum_probs=58.2

Q ss_pred             HhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 010968           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI  171 (496)
Q Consensus        92 ~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~  171 (496)
                      .+.+..|.+.+..         .....||+||+|.|++-..|+..  +.+++|+|+|+..++..++....+. ..+++++
T Consensus         7 ~~i~~kIv~~~~~---------~~~d~VlEIGPG~G~LT~~Ll~~--~~~v~aiE~D~~l~~~L~~~~~~~~-~~~~~~~   74 (278)
T d1zq9a1           7 PLIINSIIDKAAL---------RPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTP-VASKLQV   74 (278)
T ss_dssp             HHHHHHHHHHTCC---------CTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTST-TGGGEEE
T ss_pred             HHHHHHHHHHhCC---------CCCCEEEEECCCchHHHHHHHhc--CCcEEEEEEccchhHHHHHHHhhhc-cccchhh
Confidence            3556666666642         12458999999999998888765  4699999999999999999987763 6678999


Q ss_pred             EEccCC
Q 010968          172 RKVDNS  177 (496)
Q Consensus       172 v~~d~~  177 (496)
                      +.+|..
T Consensus        75 i~~D~l   80 (278)
T d1zq9a1          75 LVGDVL   80 (278)
T ss_dssp             EESCTT
T ss_pred             hHHHHh
Confidence            998854

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.92  E-value=8.2e-06  Score=75.73  Aligned_cols=61  Identities=8%  Similarity=0.048  Sum_probs=54.3

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ++.+|||||||+|.-++.++..++ +.+++++|++++.++.|++|++..+ +.++|+++.++.
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~g-l~~~i~l~~Gd~  117 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAG-LQDKVTILNGAS  117 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHT-CGGGEEEEESCH
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcC-CCccceeeeccc
Confidence            456899999999998888887765 6899999999999999999999985 999999999874

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=8e-05  Score=69.01  Aligned_cols=110  Identities=17%  Similarity=0.131  Sum_probs=67.1

Q ss_pred             eecCChhhHHHHHHHHHhHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHH
Q 010968           53 IDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPL  132 (496)
Q Consensus        53 IDf~d~~A~r~Lt~aLL~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~il  132 (496)
                      ++.++...-+...-.-+...|+-.+.+-.-    +-+ ..-+..+|.|-+...  +..    ...+++|||||+|.=++.
T Consensus        14 ~~ls~~q~~~L~~y~~ll~~~N~~~NLts~----~~~-~~~~~rHi~DSl~~~--~~~----~~~~ilDiGsGaG~PGi~   82 (207)
T d1jsxa_          14 ISLTDHQKNQLIAYVNMLHKWNKAYNLTSV----RDP-NEMLVRHILDSIVVA--PYL----QGERFIDVGTGPGLPGIP   82 (207)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHC-----------------CHHHHHHHHHHHHG--GGC----CSSEEEEETCTTTTTHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCceeeEEC----CCH-HHHHHHHhcchHhhh--hhh----cCCceeeeeccCCceeee
Confidence            455544333222222244455555554321    111 123455666655432  211    234899999999998889


Q ss_pred             HHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          133 LGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       133 La~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ||...|+.+++.+|-+..-+...++-++..+ +. +|++++..
T Consensus        83 laI~~p~~~~~Lves~~KK~~FL~~~~~~L~-L~-nv~v~~~R  123 (207)
T d1jsxa_          83 LSIVRPEAHFTLLDSLGKRVRFLRQVQHELK-LE-NIEPVQSR  123 (207)
T ss_dssp             HHHHCTTSEEEEEESCHHHHHHHHHHHHHTT-CS-SEEEEECC
T ss_pred             hhhhcccceEEEEecchHHHHHHHHHHHHcC-Cc-ceeeeccc
Confidence            9888899999999999999999998888874 64 58888765

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.82  E-value=0.00028  Score=66.77  Aligned_cols=180  Identities=11%  Similarity=0.091  Sum_probs=110.7

Q ss_pred             HHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEE
Q 010968           94 YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRK  173 (496)
Q Consensus        94 yi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~  173 (496)
                      +..++.|-+...  +... .....+++|||||+|.=++.||-.+|+.+++.+|-+..-+..-+.-++..+ |+ .+.++.
T Consensus        52 ~~rHi~DSl~~~--~~~~-~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~-L~-n~~i~~  126 (239)
T d1xdza_          52 YLKHFYDSITAA--FYVD-FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ-LE-NTTFCH  126 (239)
T ss_dssp             HHHTHHHHHGGG--GTSC-GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT-CS-SEEEEE
T ss_pred             HHHhccchhhhh--hhhc-ccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhC-CC-CcEEEe
Confidence            456677766432  1111 113458999999999988888888899999999999998888887777664 64 477766


Q ss_pred             ccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCcc
Q 010968          174 VDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFE  253 (496)
Q Consensus       174 ~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~  253 (496)
                      .....                                                     +.......++||+|+|=     
T Consensus       127 ~R~E~-----------------------------------------------------~~~~~~~~~~~D~v~sR-----  148 (239)
T d1xdza_         127 DRAET-----------------------------------------------------FGQRKDVRESYDIVTAR-----  148 (239)
T ss_dssp             SCHHH-----------------------------------------------------HTTCTTTTTCEEEEEEE-----
T ss_pred             ehhhh-----------------------------------------------------ccccccccccceEEEEh-----
Confidence            53210                                                     00000013579999971     


Q ss_pred             CcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCc--HHHHHHHHHHcCCeeEEEEEec
Q 010968          254 SMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSN--LKFLISKLRKVGVTIVKTTEFV  331 (496)
Q Consensus       254 s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~--l~~L~~~L~~~g~~~vk~~ed~  331 (496)
                                 |++   .           +..+++-+..+++++|.+..|-|+...  ++...+.+...|+....+.+..
T Consensus       149 -----------Ava---~-----------l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~~~v~~~~  203 (239)
T d1xdza_         149 -----------AVA---R-----------LSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFK  203 (239)
T ss_dssp             -----------CCS---C-----------HHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             -----------hhh---C-----------HHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEEEEEEEEe
Confidence                       111   1           456777778889999999999996543  3445556777777644443332


Q ss_pred             --CCCeeEEEEEEeeCCc-ccccc-CCCcccccc
Q 010968          332 --QGQTCRWGLAWSFVPP-ARKII-SPHVAEKKN  361 (496)
Q Consensus       332 --qG~t~Rw~lAWsF~~~-~~~~~-~~~~~~~~~  361 (496)
                        .....|.++.+.-..+ +.+-+ ++..+.|.+
T Consensus       204 lp~~~~~r~lv~i~K~~~~p~~yPR~~g~p~k~P  237 (239)
T d1xdza_         204 LPIEESDRNIMVIRKIKNTPKKYPRKPGTPNKSP  237 (239)
T ss_dssp             CTTTCCEEEEEEEEECSCCCTTCSCSTTHHHHSC
T ss_pred             CCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCC
Confidence              1223577776654322 22222 444555543

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.82  E-value=9e-06  Score=76.47  Aligned_cols=60  Identities=12%  Similarity=0.118  Sum_probs=54.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      +.+||+|||++|.-++.++..++ +.+++.+|++++..+.|++|+++.+ +.++|+++.++.
T Consensus        60 ~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g-~~~~i~~~~g~a  120 (227)
T d1susa1          60 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG-VDHKIDFREGPA  120 (227)
T ss_dssp             CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT-CGGGEEEEESCH
T ss_pred             CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhc-cccceeeeehHH
Confidence            56899999999998888888776 5899999999999999999999995 899999998873

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=3.7e-05  Score=75.26  Aligned_cols=62  Identities=15%  Similarity=0.105  Sum_probs=49.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC-------CCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN-------PHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N-------~~L~~rI~~v~~d~~  177 (496)
                      ...+||||||+|.+...++...+..+++|+|+++.+++.|+++++..       +.-..+|+++++|..
T Consensus       152 ~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~  220 (328)
T d1nw3a_         152 DDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL  220 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTT
T ss_pred             CCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccc
Confidence            45899999999999887777666678999999999999999987642       101246999999865

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.80  E-value=9.6e-07  Score=84.20  Aligned_cols=69  Identities=14%  Similarity=0.181  Sum_probs=50.4

Q ss_pred             HHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEE
Q 010968           94 YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRK  173 (496)
Q Consensus        94 yi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~  173 (496)
                      .++.|.+.+..         .....|||||||+|++...|+..  +.+++|+|+|+++++.++++....    .+++++.
T Consensus        17 ii~kIv~~~~~---------~~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~~~----~n~~ii~   81 (245)
T d1yuba_          17 VLNQIIKQLNL---------KETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKLN----TRVTLIH   81 (245)
T ss_dssp             THHHHHHHCCC---------CSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTTC----SEEEECC
T ss_pred             HHHHHHHhcCC---------CCCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhhhc----cchhhhh
Confidence            45556666542         13458999999999998888754  569999999999988876655322    4688888


Q ss_pred             ccCC
Q 010968          174 VDNS  177 (496)
Q Consensus       174 ~d~~  177 (496)
                      +|..
T Consensus        82 ~D~l   85 (245)
T d1yuba_          82 QDIL   85 (245)
T ss_dssp             SCCT
T ss_pred             hhhh
Confidence            8754

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.66  E-value=4.3e-05  Score=77.64  Aligned_cols=47  Identities=13%  Similarity=-0.004  Sum_probs=41.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN  162 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N  162 (496)
                      ..++||||||.|-+...+|.+.+..+++|+|+++.+++.|+++++..
T Consensus       217 gd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~  263 (406)
T d1u2za_         217 GDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEEL  263 (406)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHH
T ss_pred             CCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence            35899999999999888888777679999999999999999998753

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.63  E-value=0.00018  Score=70.30  Aligned_cols=62  Identities=11%  Similarity=-0.029  Sum_probs=47.9

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC-CC--CCCcEEEEEccC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN-PH--ISELIEIRKVDN  176 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N-~~--L~~rI~~v~~d~  176 (496)
                      ++.+||.||.|.|.++..+++..+..+++++|||++.+++|++..... .+  -+.|++++.+|.
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da  141 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDA  141 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCH
T ss_pred             CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchH
Confidence            457899999999988777765555679999999999999999876321 11  135889988873

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=7.6e-05  Score=69.46  Aligned_cols=61  Identities=16%  Similarity=0.115  Sum_probs=54.7

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN  176 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~  176 (496)
                      ++.+||+||||+|.-++.++..++ +.+++.+|++++..+.|++|++..+ +.++|+++.++.
T Consensus        59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag-~~~~i~~~~Gda  120 (219)
T d2avda1          59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE-AEHKIDLRLKPA  120 (219)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT-CTTTEEEEESCH
T ss_pred             CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcC-ccceEEEEEeeh
Confidence            356899999999998888887776 6899999999999999999999995 999999999874

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.51  E-value=0.00046  Score=66.04  Aligned_cols=61  Identities=10%  Similarity=-0.016  Sum_probs=46.0

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC--------CCCCcEEEEEccC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP--------HISELIEIRKVDN  176 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~--------~L~~rI~~v~~d~  176 (496)
                      ++.+||-||.|.|.++..+++ .+..+++++|||++.+++|++-...++        .-..|++++.+|.
T Consensus        72 ~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da  140 (276)
T d1mjfa_          72 KPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDG  140 (276)
T ss_dssp             CCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCH
T ss_pred             CCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChH
Confidence            467999999999988766654 455689999999999999997543221        1246888888763

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.49  E-value=9.1e-05  Score=74.34  Aligned_cols=50  Identities=14%  Similarity=-0.063  Sum_probs=44.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHIS  166 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~  166 (496)
                      +.+|||..||||.-++..+.+.+..+|++.|+|++|++++++|++.|+ +.
T Consensus        46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~-~~   95 (375)
T d2dula1          46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNF-DG   95 (375)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHC-CS
T ss_pred             CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcC-cc
Confidence            468999999999999888887776689999999999999999999995 54

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.45  E-value=0.00081  Score=64.36  Aligned_cols=62  Identities=11%  Similarity=0.057  Sum_probs=47.5

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCC--CCCcEEEEEccC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPH--ISELIEIRKVDN  176 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~--L~~rI~~v~~d~  176 (496)
                      .+.+||-||-|.|.++..+.+..+..+++++|||++.+++|++-...+.+  -+.|++++.+|.
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~  138 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDG  138 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCS
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechH
Confidence            45689999999999877776544557999999999999999987543211  135888888773

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=4.2e-05  Score=72.87  Aligned_cols=71  Identities=11%  Similarity=0.044  Sum_probs=53.4

Q ss_pred             HhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 010968           92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI  171 (496)
Q Consensus        92 ~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~  171 (496)
                      .+.++.|.+.+...         ....||+||+|.|++-..|+..  ..+++|+|+|++.++..++....    .+++++
T Consensus         7 ~~~~~~Iv~~~~~~---------~~d~vlEIGpG~G~LT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~----~~~~~i   71 (252)
T d1qyra_           7 QFVIDSIVSAINPQ---------KGQAMVEIGPGLAALTEPVGER--LDQLTVIELDRDLAARLQTHPFL----GPKLTI   71 (252)
T ss_dssp             HHHHHHHHHHHCCC---------TTCCEEEECCTTTTTHHHHHTT--CSCEEEECCCHHHHHHHHTCTTT----GGGEEE
T ss_pred             HHHHHHHHHhcCCC---------CCCEEEEECCCchHHHHHHHcc--CCceEEEEeccchhHHHHHHhhh----ccchhH
Confidence            45677777777531         2457999999999998777643  56899999999999988764322    357999


Q ss_pred             EEccCC
Q 010968          172 RKVDNS  177 (496)
Q Consensus       172 v~~d~~  177 (496)
                      +.+|..
T Consensus        72 i~~D~l   77 (252)
T d1qyra_          72 YQQDAM   77 (252)
T ss_dssp             ECSCGG
T ss_pred             Hhhhhh
Confidence            988854

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.30  E-value=0.00096  Score=64.67  Aligned_cols=62  Identities=16%  Similarity=0.057  Sum_probs=47.7

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC-CC-CCcEEEEEccC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP-HI-SELIEIRKVDN  176 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~-~L-~~rI~~v~~d~  176 (496)
                      ++.+||=||.|.|.++-.+++..+..+++++|||++.+++|++-...+. .+ +.|++++.+|.
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da  152 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANG  152 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhH
Confidence            4679999999999887766654456789999999999999998654321 12 35899988873

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.30  E-value=0.0019  Score=60.40  Aligned_cols=53  Identities=17%  Similarity=0.064  Sum_probs=42.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ..+|||||||+|.++..+++++|+.+++..|+-+ .+       +..+ ..+||+++.+|..
T Consensus        82 ~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi-------~~~~-~~~ri~~~~gd~~  134 (244)
T d1fp1d2          82 ISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ-VI-------ENAP-PLSGIEHVGGDMF  134 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HH-------TTCC-CCTTEEEEECCTT
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEecchh-hh-------hccC-CCCCeEEecCCcc
Confidence            4689999999999999999999999999999843 32       3332 5678999887743

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.04  E-value=0.0048  Score=57.58  Aligned_cols=53  Identities=13%  Similarity=0.030  Sum_probs=43.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ..+|+|||+|+|..+..++.++|+++++..|.. ..++       ..+ ..+||+++.+|..
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~-------~~~-~~~rv~~~~gD~f  133 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRP-QVVE-------NLS-GSNNLTYVGGDMF  133 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHT-------TCC-CBTTEEEEECCTT
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecCH-HHHH-------hCc-ccCceEEEecCcc
Confidence            357999999999999999999999999999984 3332       332 5689999988754

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.0035  Score=60.04  Aligned_cols=58  Identities=16%  Similarity=0.043  Sum_probs=47.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD  175 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d  175 (496)
                      ..+|||+|+|.|.=...|+.... ...++|+|+++.-++..++|+++.+ +. .+.+...|
T Consensus        95 g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g-~~-~~~~~~~d  153 (293)
T d2b9ea1          95 GSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG-VS-CCELAEED  153 (293)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT-CC-SEEEEECC
T ss_pred             cceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcC-cc-ceeeeehh
Confidence            45799999999987777776554 5789999999999999999999985 54 47776665

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.52  E-value=0.0041  Score=60.61  Aligned_cols=61  Identities=13%  Similarity=0.069  Sum_probs=46.3

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCC-C-CCcEEEEEcc
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPH-I-SELIEIRKVD  175 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~-L-~~rI~~v~~d  175 (496)
                      .+.+||-||-|.|.++-.+++..+..+++++|||++.+++|++-...+.. + +.|++++.+|
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~D  168 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGD  168 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSC
T ss_pred             CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEch
Confidence            45689999999999877776544446899999999999999987643310 1 2578887766

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.45  E-value=0.0017  Score=63.23  Aligned_cols=89  Identities=12%  Similarity=0.096  Sum_probs=61.2

Q ss_pred             hHhcCcEEEecCCCeeCCCCCcHhHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcH
Q 010968           70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD  149 (496)
Q Consensus        70 ~~ffGL~~~Vp~g~LiPrvP~R~nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~  149 (496)
                      ++.||-+|-+.           .+.+.-|.+.+....   ......+..|||||.|.|++...|..+...-+++++|+|+
T Consensus        12 kk~~GQnfL~d-----------~~i~~~Iv~~~~l~~---~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~   77 (322)
T d1i4wa_          12 KFFYGFKYLWN-----------PTVYNKIFDKLDLTK---TYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRS   77 (322)
T ss_dssp             CCGGGCCCBCC-----------HHHHHHHHHHHCGGG---TCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCH
T ss_pred             hhhccccccCC-----------HHHHHHHHHHhcCCc---cccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCH
Confidence            55666666554           456677777764320   0011245689999999999987776554335899999999


Q ss_pred             HHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          150 VALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       150 ~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ..++.-++...     +++++++.+|..
T Consensus        78 ~~~~~L~~~~~-----~~~~~ii~~D~l  100 (322)
T d1i4wa_          78 SLYKFLNAKFE-----GSPLQILKRDPY  100 (322)
T ss_dssp             HHHHHHHHHTT-----TSSCEEECSCTT
T ss_pred             HHHHHHHHhcc-----CCCcEEEeCchh
Confidence            99998776532     246888888854

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.014  Score=55.45  Aligned_cols=145  Identities=12%  Similarity=0.016  Sum_probs=91.8

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ...+|||+|+|.|.=...|+....+..++|+|+++.-++..++|+++.+ +.. +.+...+..                 
T Consensus       102 ~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g-~~~-~~~~~~~~~-----------------  162 (284)
T d1sqga2         102 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG-MKA-TVKQGDGRY-----------------  162 (284)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT-CCC-EEEECCTTC-----------------
T ss_pred             ccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccc-ccc-eeeeccccc-----------------
Confidence            3468999999999877777766666889999999999999999999985 542 222221110                 


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                          ....  ...++||.|++-||=-.+.- ..++|.....-....+ 
T Consensus       163 ------------------------------------~~~~--~~~~~fd~IL~DaPCSg~G~-~rr~p~~~~~~~~~~~-  202 (284)
T d1sqga2         163 ------------------------------------PSQW--CGEQQFDRILLDAPCSATGV-IRRHPDIKWLRRDRDI-  202 (284)
T ss_dssp             ------------------------------------THHH--HTTCCEEEEEEECCCCCGGG-TTTCTTHHHHCCTTHH-
T ss_pred             ------------------------------------cchh--cccccccEEEEeccccccCc-cccccchhhccccchh-
Confidence                                                0000  12467999999999533322 2345554322222100 


Q ss_pred             ccCch-HHHHHHHHHHHHHhhcCCeEE---EEEeCCcCcHHHHHHHHHHcC
Q 010968          275 CSGGE-RAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVG  321 (496)
Q Consensus       275 ~~GGe-l~FI~riI~eS~~ll~~~gwf---tsmvGk~s~l~~L~~~L~~~g  321 (496)
                         -+ ...=.+|++.+..+++++|.+   |+-+...++-.-+...|++..
T Consensus       203 ---~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~~~  250 (284)
T d1sqga2         203 ---PELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTA  250 (284)
T ss_dssp             ---HHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCT
T ss_pred             ---hHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHHhCC
Confidence               01 123356888888888888754   445565667667777787753

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0039  Score=59.87  Aligned_cols=62  Identities=15%  Similarity=0.065  Sum_probs=47.3

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC--CCCCCcEEEEEccC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN--PHISELIEIRKVDN  176 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N--~~L~~rI~~v~~d~  176 (496)
                      .+.+||-||-|.|.++-.+.+..+..+++++|||++.+++|++-...+  ..-+.|++++.+|.
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da  141 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDG  141 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH
T ss_pred             CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccH
Confidence            457899999999988777765445679999999999999998854321  11246899988873

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.90  E-value=0.038  Score=53.15  Aligned_cols=145  Identities=12%  Similarity=0.057  Sum_probs=89.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD  194 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~-~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~  194 (496)
                      ..+|||+|+|.|.=...++.... ...++|.|+++.-++..++|+++.+ +. .|.+...|...                
T Consensus       117 g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~-~~-~i~~~~~d~~~----------------  178 (313)
T d1ixka_         117 GEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG-VL-NVILFHSSSLH----------------  178 (313)
T ss_dssp             TCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT-CC-SEEEESSCGGG----------------
T ss_pred             cceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHH-hh-ccccccccccc----------------
Confidence            35899999999976566666554 5689999999999999999999885 43 34444332110                


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCccc
Q 010968          195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV  274 (496)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv  274 (496)
                                                           +..   ....||.|++-||=-.+.. ...+|.....-....+ 
T Consensus       179 -------------------------------------~~~---~~~~fD~ILvDaPCSg~G~-~~r~p~~~~~~~~~~~-  216 (313)
T d1ixka_         179 -------------------------------------IGE---LNVEFDKILLDAPCTGSGT-IHKNPERKWNRTMDDI-  216 (313)
T ss_dssp             -------------------------------------GGG---GCCCEEEEEEECCTTSTTT-CC--------CCHHHH-
T ss_pred             -------------------------------------ccc---ccccccEEEEccccccCCc-eeeccchhhhhhhhHH-
Confidence                                                 001   1457999999999543322 1234544322111100 


Q ss_pred             ccCchHHHHHHHHHHHHHhhcCCeEE---EEEeCCcCcHHHHHHHHHHcCC
Q 010968          275 CSGGERAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVGV  322 (496)
Q Consensus       275 ~~GGel~FI~riI~eS~~ll~~~gwf---tsmvGk~s~l~~L~~~L~~~g~  322 (496)
                      -.  =...=.+|+..+..+++++|.+   |+-+.+..+-.-+...|++.++
T Consensus       217 ~~--l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~~~~  265 (313)
T d1ixka_         217 KF--CQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDV  265 (313)
T ss_dssp             HH--HHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSE
T ss_pred             HH--HHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhcCCC
Confidence            00  0234456888888888888843   4566667777777777877654

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.50  E-value=0.01  Score=53.01  Aligned_cols=45  Identities=20%  Similarity=0.278  Sum_probs=34.1

Q ss_pred             CCCeEEEEcCchhH----HHHHHHHHh----cCCeeEEecCcHHHHHHHHHHH
Q 010968          115 DKVKGFDIGTGANC----IYPLLGASL----LGWSFVGSDMTDVALEWAEKNV  159 (496)
Q Consensus       115 ~~~~vLDIGTGSG~----I~ilLa~~~----~~~~v~avDIs~~AL~~A~~N~  159 (496)
                      .+.+|++.|||+|-    |+++|....    ..++++|+|||+.+|+.|++.+
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~   76 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGI   76 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTE
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCc
Confidence            56899999999995    444444322    1347999999999999998654

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.39  E-value=0.0076  Score=57.86  Aligned_cols=62  Identities=8%  Similarity=0.005  Sum_probs=46.9

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC--CCCCCcEEEEEccC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN--PHISELIEIRKVDN  176 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N--~~L~~rI~~v~~d~  176 (496)
                      ++.+||=||-|.|.++-.+++..+..+++++|||++.+++|++-...+  ..-+.|++++.+|.
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da  143 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDG  143 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCH
T ss_pred             CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccH
Confidence            457899999999998777665444468999999999999999854221  01246899888873

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=95.22  E-value=0.0089  Score=56.50  Aligned_cols=59  Identities=10%  Similarity=0.038  Sum_probs=46.0

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCC---C----CCCcEEEEEcc
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP---H----ISELIEIRKVD  175 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~---~----L~~rI~~v~~d  175 (496)
                      ...+|||.-+|.|..+..++..  +.+|+++|.++....+.+.++++..   .    +..+++++.+|
T Consensus        88 ~~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~D  153 (250)
T d2oyra1          88 YLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS  153 (250)
T ss_dssp             BCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred             CCCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCc
Confidence            3458999999999998888754  6899999999998888887765431   1    12478999887

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=95.07  E-value=0.013  Score=54.16  Aligned_cols=54  Identities=13%  Similarity=0.043  Sum_probs=43.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE  178 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~  178 (496)
                      ..+|+|||||+|..+..|+.++|+.+++..|+-+. +       +.. ...++++++..|..+
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i-------~~~-~~~~r~~~~~~d~~~  135 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-I-------EDA-PSYPGVEHVGGDMFV  135 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-T-------TTC-CCCTTEEEEECCTTT
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-h-------hhc-ccCCceEEecccccc
Confidence            45899999999999999999999999999999653 2       222 245789999888653

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.04  E-value=0.047  Score=48.70  Aligned_cols=129  Identities=13%  Similarity=0.079  Sum_probs=84.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE  195 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~~~~p~~~~~~~~~~~~~~  195 (496)
                      ...++|..+|.|.-...+...  +.+|+|+|+|++|++.|++.      ...++.+++.+...                 
T Consensus        19 g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~------~~~~~~~~~~~f~~-----------------   73 (182)
T d1wg8a2          19 GGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGL------HLPGLTVVQGNFRH-----------------   73 (182)
T ss_dssp             TCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHT------CCTTEEEEESCGGG-----------------
T ss_pred             CCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhc------cccceeEeehHHHH-----------------
Confidence            458999999999876666543  56999999999999988752      23578888775321                 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccc
Q 010968          196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC  275 (496)
Q Consensus       196 ~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~~~il~~v~~~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~  275 (496)
                        +.                              .++...  ..+.+|.|+..--+-+ ..-.  +|       ..    
T Consensus        74 --~~------------------------------~~l~~~--~~~~vdgIl~DLGvSs-~qld--~~-------~r----  105 (182)
T d1wg8a2          74 --LK------------------------------RHLAAL--GVERVDGILADLGVSS-FHLD--DP-------SD----  105 (182)
T ss_dssp             --HH------------------------------HHHHHT--TCSCEEEEEEECSCCH-HHHH--CG-------GT----
T ss_pred             --HH------------------------------HHHHHc--CCCccCEEEEEccCCH-HHhh--cc-------hH----
Confidence              00                              011111  1357899998765522 2111  11       12    


Q ss_pred             cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHH--HHHHHHHHcCC
Q 010968          276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLK--FLISKLRKVGV  322 (496)
Q Consensus       276 ~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~--~L~~~L~~~g~  322 (496)
                         |+.|....++.+..+++++|-+..+.  ..+++  .+...+++.++
T Consensus       106 ---e~~~~~~~L~~~~~~lk~gg~~~ii~--fhs~Ed~ivk~~~~e~~~  149 (182)
T d1wg8a2         106 ---ELNALKEFLEQAAEVLAPGGRLVVIA--FHSLEDRVVKRFLRESGL  149 (182)
T ss_dssp             ---HHHHHHHHHHHHHHHEEEEEEEEEEE--CSHHHHHHHHHHHHHHCS
T ss_pred             ---HHHHHHHHHHHHHhhhCCCCeEEEEe--cccchhHHHHHHHhhccc
Confidence               78899999999999999888776554  34444  36666776543

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=91.22  E-value=0.21  Score=44.31  Aligned_cols=43  Identities=23%  Similarity=0.228  Sum_probs=36.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHH
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVK  160 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~  160 (496)
                      ...|||-=+|||-.+  +|+...+-+.+|+|++++.+++|++.++
T Consensus       213 gd~VlDpF~GSGTT~--~aa~~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         213 NDLVLDCFMGSGTTA--IVAKKLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             TCEEEESSCTTCHHH--HHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEECCCCchHHH--HHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence            458999999999763  5555667899999999999999998875

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=89.31  E-value=0.32  Score=43.63  Aligned_cols=46  Identities=17%  Similarity=0.074  Sum_probs=38.0

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN  162 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N  162 (496)
                      ....|||-=+|||-.  ++|+...+-+++|+|++++.+++|++.++..
T Consensus       207 ~gdiVLDpF~GSGTT--~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         207 PGSTVLDFFAGSGVT--ARVAIQEGRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             TTCEEEETTCTTCHH--HHHHHHHTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             CCCEEEecCCCCcHH--HHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            345899999999976  3455556789999999999999999998754

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=88.95  E-value=0.25  Score=45.03  Aligned_cols=46  Identities=17%  Similarity=0.023  Sum_probs=37.2

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCeeEEecCcHHHHHHHHHHHHHC
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN  162 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N~~~N  162 (496)
                      ....|||.-+|||-.+  +|+...+-+++|+|+++++++.|++-+..+
T Consensus       250 ~gdiVlDpF~GSGTT~--~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~~  295 (320)
T d1booa_         250 PDDLVVDIFGGSNTTG--LVAERESRKWISFEMKPEYVAASAFRFLDN  295 (320)
T ss_dssp             TTCEEEETTCTTCHHH--HHHHHTTCEEEEEESCHHHHHHHHGGGSCS
T ss_pred             CCCEEEecCCCCcHHH--HHHHHcCCcEEEEeCCHHHHHHHHHHHHhc
Confidence            3468999999999763  444556889999999999999998877654

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=86.07  E-value=0.95  Score=39.81  Aligned_cols=73  Identities=15%  Similarity=0.128  Sum_probs=50.5

Q ss_pred             CCCcEEEEEECCCCccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHH
Q 010968          238 DGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKL  317 (496)
Q Consensus       238 ~~e~FDfImcNPPY~~s~eea~~eP~~al~G~~~Emv~~GGel~FI~riI~eS~~ll~~~gwftsmvGk~s~l~~L~~~L  317 (496)
                      +++++|+|++-|||.-.....+.       ....+     -=+.|+.+++.+..+.++++|.+..... ......+...+
T Consensus        20 pd~sVdliitdPPY~~~~~~~d~-------~~~~~-----~y~~~~~~~~~e~~rvLk~~g~~~~~~~-~~~~~~~~~~~   86 (256)
T d1g60a_          20 ENKSVQLAVIDPPYNLSKADWDS-------FDSHN-----EFLAFTYRWIDKVLDKLDKDGSLYIFNT-PFNCAFICQYL   86 (256)
T ss_dssp             CTTCEEEEEECCCCSSCSSGGGC-------CSSHH-----HHHHHHHHHHHHHHHHEEEEEEEEEEEC-HHHHHHHHHHH
T ss_pred             cCCCcCEEEECCCCCCCcCcCcC-------CCCHH-----HHHHHHHHHHHHhhhccccCcccccccC-chhhhhhhhhh
Confidence            35789999999999754332211       00000     0256788899999999999998765554 66777788888


Q ss_pred             HHcCCe
Q 010968          318 RKVGVT  323 (496)
Q Consensus       318 ~~~g~~  323 (496)
                      .+.|+.
T Consensus        87 ~~~g~~   92 (256)
T d1g60a_          87 VSKGMI   92 (256)
T ss_dssp             HHTTCE
T ss_pred             hcccce
Confidence            888875

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.06  E-value=0.55  Score=42.89  Aligned_cols=60  Identities=20%  Similarity=0.131  Sum_probs=47.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ...+|=.|+++| |+..++.++  .+++|+.+|.+++.++.+.+-++..+ ...++..+..|..
T Consensus        10 ~Kv~lITGas~G-IG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~-~~~~~~~~~~Dls   71 (257)
T d1xg5a_          10 DRLALVTGASGG-IGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAG-YPGTLIPYRCDLS   71 (257)
T ss_dssp             TCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CSSEEEEEECCTT
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CCceEEEEEccCC
Confidence            457888998876 888887766  57999999999999998887777653 5567888888864

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=85.71  E-value=0.52  Score=43.56  Aligned_cols=43  Identities=19%  Similarity=0.111  Sum_probs=35.0

Q ss_pred             CCCeEEEEcCchhHHHHHHHHHhcCCee-EEecCcHHHHHHHHHHH
Q 010968          115 DKVKGFDIGTGANCIYPLLGASLLGWSF-VGSDMTDVALEWAEKNV  159 (496)
Q Consensus       115 ~~~~vLDIGTGSG~I~ilLa~~~~~~~v-~avDIs~~AL~~A~~N~  159 (496)
                      .+.++|||-||.|.+  .++.+.-++++ .|+|+++.|++.-+.|.
T Consensus        10 ~~lrv~~lFsG~Gg~--~~gl~~aG~~~v~a~e~d~~a~~~~~~N~   53 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGF--RLALESCGAECVYSNEWDKYAQEVYEMNF   53 (327)
T ss_dssp             TTCEEEEETCTTTHH--HHHHHHTTCEEEEEECCCHHHHHHHHHHH
T ss_pred             CCCeEEEECccccHH--HHHHHHCCCeEEEEEeCCHHHHHHHHHHC
Confidence            468999999999977  45555567654 67999999999999886

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.07  E-value=0.56  Score=43.23  Aligned_cols=42  Identities=14%  Similarity=0.082  Sum_probs=32.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHHhcCC--e-eEEecCcHHHHHHHHHHH
Q 010968          116 KVKGFDIGTGANCIYPLLGASLLGW--S-FVGSDMTDVALEWAEKNV  159 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~~~~--~-v~avDIs~~AL~~A~~N~  159 (496)
                      +.+++|+.||.|...  ++.+.-++  + +.|+|+++.|++.-+.|.
T Consensus         2 p~kv~~lF~G~Gg~~--~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~   46 (343)
T d1g55a_           2 PLRVLELYSGVGGMH--HALRESCIPAQVVAAIDVNTVANEVYKYNF   46 (343)
T ss_dssp             CEEEEEETCTTCHHH--HHHHHHTCSEEEEEEECCCHHHHHHHHHHC
T ss_pred             CCEEEEcCcCccHHH--HHHHHcCCCCeEEEEEECCHHHHHHHHHHC
Confidence            568999999999874  44444454  3 579999999999888874

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=83.59  E-value=0.6  Score=42.52  Aligned_cols=40  Identities=18%  Similarity=0.198  Sum_probs=31.9

Q ss_pred             eEEEEcCchhHHHHHHHHHhcCCee-EEecCcHHHHHHHHHHH
Q 010968          118 KGFDIGTGANCIYPLLGASLLGWSF-VGSDMTDVALEWAEKNV  159 (496)
Q Consensus       118 ~vLDIGTGSG~I~ilLa~~~~~~~v-~avDIs~~AL~~A~~N~  159 (496)
                      ++||+-||.|.+.  ++.+.-++++ .++|+++.|.+.-+.|.
T Consensus         2 k~~~lF~G~Gg~~--~gl~~aG~~~~~a~e~d~~a~~~~~~N~   42 (324)
T d1dcta_           2 NLISLFSGAGGLD--LGFQKAGFRIICANEYDKSIWKTYESNH   42 (324)
T ss_dssp             EEEEESCSSCHHH--HHHHHHTCEEEEEEECCHHHHHHHHHHC
T ss_pred             eEEEeCcCcCHHH--HHHHHCCCEEEEEEeCCHHHHHHHHHHC
Confidence            6999999999874  4445557765 59999999999888774

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=82.19  E-value=1.2  Score=40.38  Aligned_cols=58  Identities=16%  Similarity=-0.039  Sum_probs=45.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHHh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 010968          116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS  177 (496)
Q Consensus       116 ~~~vLDIGTGSG~I~ilLa~~~--~~~~v~avDIs~~AL~~A~~N~~~N~~L~~rI~~v~~d~~  177 (496)
                      ++.+|=.|.++| |+..++..+  .+++|+.+|.+++.++-+.+.++..+   .++..+..|..
T Consensus        10 nKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g---~~~~~~~~Dvt   69 (251)
T d2c07a1          10 NKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG---YESSGYAGDVS   69 (251)
T ss_dssp             SCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT---CCEEEEECCTT
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEccCC
Confidence            456777787766 888888776  46899999999999998888887653   46888888864

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=82.01  E-value=1.2  Score=39.03  Aligned_cols=43  Identities=14%  Similarity=0.085  Sum_probs=31.6

Q ss_pred             CCeEEEEcCch-hHHHHHHHHHhcCCeeEEecCcHHHHHHHHHH
Q 010968          116 KVKGFDIGTGA-NCIYPLLGASLLGWSFVGSDMTDVALEWAEKN  158 (496)
Q Consensus       116 ~~~vLDIGTGS-G~I~ilLa~~~~~~~v~avDIs~~AL~~A~~N  158 (496)
                      ..+||-+|||. |.++..+++.....+|+++|.+++-++.|++.
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc
Confidence            34799999997 43444445444455899999999999998654

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=81.78  E-value=0.73  Score=42.17  Aligned_cols=68  Identities=12%  Similarity=0.033  Sum_probs=44.0

Q ss_pred             hHHHHHHHHhccCCCCCCCCCCCCCeEEEEcCchhHHHHHHHHHh----cCCeeEEecCcHHHHHHHHHHHHHCCCCCCc
Q 010968           93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL----LGWSFVGSDMTDVALEWAEKNVKSNPHISEL  168 (496)
Q Consensus        93 nyi~wI~dlL~~~~i~~~~~~~~~~~vLDIGTGSG~I~ilLa~~~----~~~~v~avDIs~~AL~~A~~N~~~N~~L~~r  168 (496)
                      ..+..+.+++...         ++.+||+|||+.|.=++.++..+    ++.+++++||++.....+     .+  ...+
T Consensus        67 ~d~~~~~eli~~~---------KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~-----~~--~~~~  130 (232)
T d2bm8a1          67 DTQAVYHDMLWEL---------RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP-----AS--DMEN  130 (232)
T ss_dssp             HHHHHHHHHHHHH---------CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC-----GG--GCTT
T ss_pred             HHHHHHHHHHHHh---------CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh-----hc--cccc
Confidence            4444556676642         46789999998886544444322    467999999987543221     11  2367


Q ss_pred             EEEEEccC
Q 010968          169 IEIRKVDN  176 (496)
Q Consensus       169 I~~v~~d~  176 (496)
                      |+++.+|.
T Consensus       131 I~~i~gDs  138 (232)
T d2bm8a1         131 ITLHQGDC  138 (232)
T ss_dssp             EEEEECCS
T ss_pred             eeeeeccc
Confidence            99998874