Citrus Sinensis ID: 010986

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490------
MITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVLKDPVTF
ccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHcccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccc
ccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHEcccccEcHHHcccHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHccHHccccHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcHHHcHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHEcccccc
MITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANdlgsdsdnlyTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLnmysrddlhdETLLKFAKLDFNLLQAAHQKELSDMTRWwkdldiptklpyardRMVEVYFWTLVGvycepkytfGRILVSKIICLISLIDdtfdaygtfEELTLFTEAVKRwdtnvtdtlPACMKFIYNKLLGVYNEAEEELAKQGrsygipyakQTMQEVILMYFTEAKwlkegyvpsveEYKSVALRSIAVLPVVtasfldmgdiATKEVFEWVLKVPKIITASENICRLLDDVAShkfeqkrghipsavECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIamplpllgpvlnlarmsefiyedgvdrytnsykmkDQVALVLKDPVTF
MITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVfekfkddegkfkASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKdldiptklpyarDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRytnsykmkdqvalvlkdpvtf
MITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVfekfkddegkfkASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHalrlplrkalprlearYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEEllnliamplpllGPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVLKDPVTF
********ISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVL******
*********S*KLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKS***********EQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVLKDPVTF
MITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVLKDPVTF
*****VDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVLKDPVTF
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MITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYKMKDQVALVLKDPVTF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query496 2.2.26 [Sep-21-2011]
Q94JS8560 (E)-beta-farnesene syntha N/A no 0.989 0.876 0.685 0.0
Q6Q3H3557 (-)-germacrene D synthase yes no 0.987 0.879 0.550 1e-153
Q6Q3H2556 Valencene synthase OS=Vit no no 0.987 0.881 0.528 1e-144
E3W207559 Sesquiterpene synthase OS N/A no 0.985 0.874 0.508 1e-142
B5A435559 Sesquiterpene synthase OS N/A no 0.985 0.874 0.504 1e-141
F6M8H7562 Probable sesquiterpene sy N/A no 0.985 0.870 0.5 1e-141
F6M8H6562 Probable sesquiterpene sy N/A no 0.985 0.870 0.502 1e-141
F6M8H4559 Probable sesquiterpene sy N/A no 0.985 0.874 0.502 1e-140
F6M8H5562 Probable sesquiterpene sy N/A no 0.979 0.864 0.501 1e-138
E3W208562 Sesquiterpene synthase OS N/A no 0.985 0.870 0.496 1e-137
>sp|Q94JS8|FARS_CITJU (E)-beta-farnesene synthase OS=Citrus junos PE=1 SV=1 Back     alignment and function desciption
 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/499 (68%), Positives = 407/499 (81%), Gaps = 8/499 (1%)

Query: 1   MITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLL 60
           MIT+  ++++ KLH+IDAVQRLGVAY FEKEIEDEL K+++DL  DSD+LY VSLRFRL 
Sbjct: 63  MITTTANKLAQKLHMIDAVQRLGVAYHFEKEIEDELGKVSHDL--DSDDLYVVSLRFRLF 120

Query: 61  RQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTH 120
           RQQ VKISCDVF+KFKDDEGKFK S+IN++RGMLSLYEAA+LA+ GE ILDEAIVFTTTH
Sbjct: 121 RQQGVKISCDVFDKFKDDEGKFKESLINDIRGMLSLYEAAYLAIRGEDILDEAIVFTTTH 180

Query: 121 LKSMIS----RVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAK 176
           LKS+IS       ++NLAEQI+H+L++PLRKA  RLEARY+L++YSRDDLHDETLLKFAK
Sbjct: 181 LKSVISISDHSHANSNLAEQIRHSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAK 240

Query: 177 LDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRIL 236
           LDFN+LQAAHQKE S MTRWW DL  P K+PYARDR++E Y W L+GV  EP   FGRI 
Sbjct: 241 LDFNILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIIETYIWMLLGVSYEPNLAFGRIF 300

Query: 237 VSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEA 296
            SK++C+I+ IDDTFDAYGTFEELTLFTEAV RWD  + DTLP  MKFI   LL +Y EA
Sbjct: 301 ASKVVCMITTIDDTFDAYGTFEELTLFTEAVTRWDIGLIDTLPEYMKFIVKALLDIYREA 360

Query: 297 EEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVT 356
           EEELAK+GRSYGIPYAKQ MQE+I++YFTEAKWL +GYVP+ +EYKSVALRSI +  +  
Sbjct: 361 EEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAV 420

Query: 357 ASFLDMGD-IATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMK 415
           ASF+D+GD IATK+ FE +LK  K + A+E I RL+DD+A +KFEQKRGH PSAVECY  
Sbjct: 421 ASFVDLGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFEQKRGHNPSAVECYKN 480

Query: 416 QHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDR 475
           QH VSEEEA K L LE+AN WKD+N EELLN   +PLP+L  +L  AR   FIY+DG DR
Sbjct: 481 QHGVSEEEAVKELLLEVANSWKDIN-EELLNPTTVPLPMLQRLLYFARSGHFIYDDGHDR 539

Query: 476 YTNSYKMKDQVALVLKDPV 494
           YT+S  MK QVAL+L +P+
Sbjct: 540 YTHSLMMKRQVALLLTEPL 558
Sesquiterpene cyclase catalyzing the production of beta-farnesene from farnesyl diphosphate.
Citrus junos (taxid: 135197)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 4EC: 7
>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1 Back     alignment and function description
>sp|Q6Q3H2|TPSVS_VITVI Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1 Back     alignment and function description
>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1 Back     alignment and function description
>sp|B5A435|STPS1_SANAL Sesquiterpene synthase OS=Santalum album PE=1 SV=1 Back     alignment and function description
>sp|F6M8H7|SMST_SANMU Probable sesquiterpene synthase OS=Santalum murrayanum GN=STPS PE=3 SV=1 Back     alignment and function description
>sp|F6M8H6|SPIST_SANSP Probable sesquiterpene synthase OS=Santalum spicatum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|F6M8H4|SAST_SANAL Probable sesquiterpene synthase OS=Santalum album GN=SesquiTPS1 PE=3 SV=1 Back     alignment and function description
>sp|F6M8H5|SAUST_SANAS Probable sesquiterpene synthase OS=Santalum austrocaledonicum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|E3W208|SPISS_SANSP Sesquiterpene synthase OS=Santalum spicatum PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query496
75250254560 RecName: Full=(E)-beta-farnesene synthas 0.989 0.876 0.685 0.0
300079902560 (E)-beta-farnesene synthase [Citrus reti 0.989 0.876 0.681 0.0
313585892551 Tps2-1 [Clausena lansium] 0.995 0.896 0.658 0.0
261343328548 terpene synthase 1 [Citrus sinensis] 0.995 0.901 0.598 1e-169
33316389548 valencene synthase [Citrus sinensis] 0.995 0.901 0.596 1e-168
19880625548 putative terpene synthase [Citrus x para 0.995 0.901 0.594 1e-168
9864189555 terpene synthase [Citrus junos] 0.991 0.886 0.586 1e-165
147828675557 hypothetical protein VITISV_013313 [Viti 0.987 0.879 0.554 1e-154
359493937557 PREDICTED: (-)-germacrene D synthase [Vi 0.987 0.879 0.554 1e-154
147856860557 hypothetical protein VITISV_030783 [Viti 0.987 0.879 0.552 1e-153
>gi|75250254|sp|Q94JS8.1|FARS_CITJU RecName: Full=(E)-beta-farnesene synthase; Short=CjFS; AltName: Full=Terpene synthase 10 gi|14134188|gb|AAK54279.1| (E)-beta-farnesene synthase [Citrus junos] Back     alignment and taxonomy information
 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/499 (68%), Positives = 407/499 (81%), Gaps = 8/499 (1%)

Query: 1   MITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLL 60
           MIT+  ++++ KLH+IDAVQRLGVAY FEKEIEDEL K+++DL  DSD+LY VSLRFRL 
Sbjct: 63  MITTTANKLAQKLHMIDAVQRLGVAYHFEKEIEDELGKVSHDL--DSDDLYVVSLRFRLF 120

Query: 61  RQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTH 120
           RQQ VKISCDVF+KFKDDEGKFK S+IN++RGMLSLYEAA+LA+ GE ILDEAIVFTTTH
Sbjct: 121 RQQGVKISCDVFDKFKDDEGKFKESLINDIRGMLSLYEAAYLAIRGEDILDEAIVFTTTH 180

Query: 121 LKSMIS----RVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAK 176
           LKS+IS       ++NLAEQI+H+L++PLRKA  RLEARY+L++YSRDDLHDETLLKFAK
Sbjct: 181 LKSVISISDHSHANSNLAEQIRHSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAK 240

Query: 177 LDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRIL 236
           LDFN+LQAAHQKE S MTRWW DL  P K+PYARDR++E Y W L+GV  EP   FGRI 
Sbjct: 241 LDFNILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIIETYIWMLLGVSYEPNLAFGRIF 300

Query: 237 VSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEA 296
            SK++C+I+ IDDTFDAYGTFEELTLFTEAV RWD  + DTLP  MKFI   LL +Y EA
Sbjct: 301 ASKVVCMITTIDDTFDAYGTFEELTLFTEAVTRWDIGLIDTLPEYMKFIVKALLDIYREA 360

Query: 297 EEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVT 356
           EEELAK+GRSYGIPYAKQ MQE+I++YFTEAKWL +GYVP+ +EYKSVALRSI +  +  
Sbjct: 361 EEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAV 420

Query: 357 ASFLDMGD-IATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMK 415
           ASF+D+GD IATK+ FE +LK  K + A+E I RL+DD+A +KFEQKRGH PSAVECY  
Sbjct: 421 ASFVDLGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFEQKRGHNPSAVECYKN 480

Query: 416 QHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDR 475
           QH VSEEEA K L LE+AN WKD+N EELLN   +PLP+L  +L  AR   FIY+DG DR
Sbjct: 481 QHGVSEEEAVKELLLEVANSWKDIN-EELLNPTTVPLPMLQRLLYFARSGHFIYDDGHDR 539

Query: 476 YTNSYKMKDQVALVLKDPV 494
           YT+S  MK QVAL+L +P+
Sbjct: 540 YTHSLMMKRQVALLLTEPL 558

Source: Citrus junos

Species: Citrus junos

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|300079902|gb|ADJ67476.1| (E)-beta-farnesene synthase [Citrus reticulata] Back     alignment and taxonomy information
>gi|313585892|gb|ADR71055.1| Tps2-1 [Clausena lansium] Back     alignment and taxonomy information
>gi|261343328|gb|ACX70155.1| terpene synthase 1 [Citrus sinensis] Back     alignment and taxonomy information
>gi|33316389|gb|AAQ04608.1|AF441124_1 valencene synthase [Citrus sinensis] Back     alignment and taxonomy information
>gi|19880625|gb|AAM00426.1|AF411120_1 putative terpene synthase [Citrus x paradisi] Back     alignment and taxonomy information
>gi|9864189|gb|AAG01339.1| terpene synthase [Citrus junos] Back     alignment and taxonomy information
>gi|147828675|emb|CAN68620.1| hypothetical protein VITISV_013313 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359493937|ref|XP_003634696.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|302143188|emb|CBI20483.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147856860|emb|CAN83470.1| hypothetical protein VITISV_030783 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query496
UNIPROTKB|B5A435559 B5A435 "Sesquiterpene synthase 0.985 0.874 0.456 5e-115
UNIPROTKB|B2KSJ5571 B2KSJ5 "(+)-gamma-cadinene syn 0.989 0.859 0.433 8.3e-106
UNIPROTKB|J7LP58564 J7LP58 "Alpha-copaene/delta-ca 0.985 0.867 0.425 2.6e-102
UNIPROTKB|J7LMP2565 J7LMP2 "Bicyclogermacrene synt 0.985 0.865 0.411 4.4e-100
UNIPROTKB|J7LJN5555 J7LJN5 "Beta-caryophyllene syn 0.967 0.864 0.429 2.4e-99
UNIPROTKB|Q49SP4545 Q49SP4 "Germacrene D synthase 0.979 0.891 0.406 4.5e-98
UNIPROTKB|B3TPQ6550 B3TPQ6 "Beta-cubebene synthase 0.979 0.883 0.407 3.2e-97
UNIPROTKB|Q49SP5554 Q49SP5 "Germacrene A synthase" 0.977 0.875 0.392 1.8e-96
UNIPROTKB|E2E2N7555 TPS4 "Bicyclogermacrene syntha 0.961 0.859 0.390 1.4e-94
UNIPROTKB|Q49SP6554 Q49SP6 "Germacrene D synthase 0.953 0.853 0.396 3.5e-91
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
 Score = 1134 (404.2 bits), Expect = 5.0e-115, P = 5.0e-115
 Identities = 228/500 (45%), Positives = 318/500 (63%)

Query:     2 ITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKL------ANDLGSDSDNLYTVSL 55
             + + VD+   +L++IDA QRLG+AY FE EIE+ L+ +       N+    S +LY+V+L
Sbjct:    62 LAATVDKPLQQLNIIDATQRLGIAYHFENEIEESLEHIYLHTYVENNCFQGSHDLYSVAL 121

Query:    56 RFRLLRQQRVKISCDVXXXXXXXXXXXXASMINNVRGMLSLYEAAHLAVHGEVILDEAIV 115
              FRLLRQ   K+SCDV             S++ + +G+L LYEA HL+VHGE +LD+A+ 
Sbjct:   122 WFRLLRQDGYKVSCDVFDKFRDYEDNFKNSLMEDAKGLLELYEATHLSVHGEEMLDDALE 181

Query:   116 FTTTHLKSMISRVISNNLAEQIQHXXXXXXXXXXXXXXXXYYLNMYSRDDLHDETLLKFA 175
             F  T L+S+++  ++  LAEQ++H                Y+  +Y   D H++ LLK A
Sbjct:   182 FAKTRLESIVNH-LNYPLAEQVRHALYRPLRKGLPRLEAVYFFRIYEAYDSHNKALLKLA 240

Query:   176 KLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRI 235
             KLDFNLLQ+ H+KELSDM RWWK LD   K P+ARDR+VE YFW L GVY EP+Y+  R 
Sbjct:   241 KLDFNLLQSLHKKELSDMARWWKSLDFAAKFPFARDRLVEGYFWVL-GVYFEPQYSLARK 299

Query:   236 LVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNE 295
             ++ K+  +IS IDD +DAYGT +EL LFT+A++RWD    D LP  MK  Y  +L VYNE
Sbjct:   300 IIIKVFTMISTIDDIYDAYGTLDELELFTKAMQRWDVGSLDQLPEYMKPCYKSILDVYNE 359

Query:   296 AEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVV 355
              EEE+  QG  + + YAK+ M++++  Y  EAKW  E YVP+ EEY  VAL +     + 
Sbjct:   360 IEEEMDNQGSLFRMHYAKEVMKKLVEGYMDEAKWCHEKYVPTFEEYMPVALVTSGYTFLT 419

Query:   356 TASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMK 415
             T S+L MG+IA+KE F+W+   P +I ASE++CRL+DD+ SHKFEQ+RGH+ S +ECYMK
Sbjct:   420 TISYLGMGEIASKEAFDWLFSHPPVIEASESVCRLMDDMRSHKFEQERGHVASGIECYMK 479

Query:   416 QHVVSEEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDR 475
             Q+ V+EEEA      ++   WKD+N EE              +LNL R+ + IY++  D 
Sbjct:   480 QYGVTEEEAHDEFRKQLVKAWKDIN-EECLRPYRVPKPLLMRILNLTRVIDVIYKNE-DG 537

Query:   476 YTNSYK-MKDQVALVLKDPV 494
             YT+  K MKD +A +L DP+
Sbjct:   538 YTHVKKAMKDNIASLLIDPM 557
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LMP2 J7LMP2 "Bicyclogermacrene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP4 Q49SP4 "Germacrene D synthase 1" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP5 Q49SP5 "Germacrene A synthase" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|E2E2N7 TPS4 "Bicyclogermacrene synthase" [Origanum vulgare (taxid:39352)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP6 Q49SP6 "Germacrene D synthase 2" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94JS8FARS_CITJU4, ., 2, ., 3, ., 4, 70.68530.98990.8767N/Ano
Q84UU4HUMS_ARATH4, ., 2, ., 3, ., -0.42180.95560.8665yesno
F6M8H5SAUST_SANAS4, ., 2, ., 3, ., -0.50100.97980.8647N/Ano
F6M8H4SAST_SANAL4, ., 2, ., 3, ., -0.5020.98580.8747N/Ano
F6M8H6SPIST_SANSP4, ., 2, ., 3, ., -0.5020.98580.8701N/Ano
E3W207SAUSS_SANAS4, ., 2, ., 3, ., -0.5080.98580.8747N/Ano
B5A435STPS1_SANAL4, ., 2, ., 3, ., -0.5040.98580.8747N/Ano
Q6Q3H3TPSGD_VITVI4, ., 2, ., 3, ., 7, 50.55040.98790.8797yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.976
3rd Layer4.2.3.47LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027449001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (557 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query496
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 0.0
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 1e-107
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 1e-107
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 8e-65
PLN02279784 PLN02279, PLN02279, ent-kaur-16-ene synthase 2e-38
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 2e-28
PLN02592800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 4e-24
PLN0215096 PLN02150, PLN02150, terpene synthase/cyclase famil 6e-10
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  640 bits (1653), Expect = 0.0
 Identities = 245/502 (48%), Positives = 346/502 (68%), Gaps = 11/502 (2%)

Query: 1   MITSAVDEISH--KLHLIDAVQRLGVAYQFEKEIEDELQKLANDLG----SDSDNLYTVS 54
           M+  +   +    +L LID +QRLG++Y FE EI++ L  +         S+ D+LYT +
Sbjct: 43  MLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEILDYIYRYWTERGESNEDDLYTTA 102

Query: 55  LRFRLLRQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAI 114
           L FRLLRQ    +S DVF+KFKD++GKFK S+  +V+GMLSLYEA+HL+  GE ILDEA+
Sbjct: 103 LGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEAL 162

Query: 115 VFTTTHLKSMISR--VISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLL 172
            FTT HL+  +    +I  +L+ +I++AL +PL  +LPRLEAR+Y+  Y ++D H+ETLL
Sbjct: 163 SFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLL 222

Query: 173 KFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTF 232
           + AKLDFN+LQA HQ+EL  ++RWWKDLD+ +KLP+ARDR+VE YFW   G Y EP+Y+ 
Sbjct: 223 ELAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWA-AGTYFEPQYSL 281

Query: 233 GRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGV 292
            RI ++K I LI++IDDT+D YGT EEL LFTEAV+RWD +  D LP  MK ++  LL  
Sbjct: 282 ARIALAKTIALITVIDDTYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNT 341

Query: 293 YNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVL 352
            NE EEEL K+G SY +PY K+  ++++  Y  EAKW  EGYVP+ EEY   AL SI + 
Sbjct: 342 VNEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLG 401

Query: 353 PVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVEC 412
           P++  SFL MGDI T+E FEW+   PK++ AS  I RL++D+A+++ E KRG + S++EC
Sbjct: 402 PLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIEC 461

Query: 413 YMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDG 472
           YMK++ VSEEEA + +   I + WK+LN E L     +P P+    LNLAR+ +  Y++G
Sbjct: 462 YMKEYGVSEEEAREEIKKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEG 521

Query: 473 VDRYTNSY-KMKDQVALVLKDP 493
            D +T+   ++KD +  +L +P
Sbjct: 522 -DGFTHPEGEIKDHITSLLFEP 542

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|177811 PLN02150, PLN02150, terpene synthase/cyclase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 496
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279784 ent-kaur-16-ene synthase 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 100.0
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 100.0
PLN0215096 terpene synthase/cyclase family protein 99.97
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.85
cd00686357 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C 97.79
PF06330376 TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 97.74
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 94.3
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 92.46
TIGR03464266 HpnC squalene synthase HpnC. This family of genes 89.68
TIGR03465266 HpnD squalene synthase HpnD. The genes of this fam 88.85
cd00683265 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthase 83.29
PLN02632334 phytoene synthase 82.21
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=1.6e-146  Score=1190.92  Aligned_cols=485  Identities=51%  Similarity=0.886  Sum_probs=471.1

Q ss_pred             ccchhhhhhHhHHHHhhCcccccHHHHHHHHHHHHhc-cC---CCCCCchhhhHHHHHhhhcCcccchhhhccccccccc
Q 010986            6 VDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLAND-LG---SDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGK   81 (496)
Q Consensus         6 ~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~-~~---~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~   81 (496)
                      +.|++++|++||+||||||+|||++||+++|++||++ ..   ....||++|||+|||||||||+||||||++|+|++|+
T Consensus        50 ~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~  129 (542)
T cd00684          50 PVDLFERLWLIDRLQRLGISYHFEDEIKEILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGK  129 (542)
T ss_pred             CCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCC
Confidence            5689999999999999999999999999999999996 11   2367999999999999999999999999999999999


Q ss_pred             cccccccchHHHHHHHHhhccccCCchHHHHHHHHHHHHHHhHhhh--ccCCchHHHHHHHccCccccccchhHHHhhHH
Q 010986           82 FKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISR--VISNNLAEQIQHALRLPLRKALPRLEARYYLN  159 (496)
Q Consensus        82 F~~~~~~d~~gll~Ly~As~l~~~gE~iL~ea~~ft~~~L~~~~~~--~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~  159 (496)
                      |++++++||+||||||||||+++|||+|||||++||++||++.+++  ..+++|+++|++||++|||+++||||||+||+
T Consensus       130 f~~~~~~d~~g~l~Ly~As~l~~~gE~iLdeA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~  209 (542)
T cd00684         130 FKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIE  209 (542)
T ss_pred             cCchhhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHH
Confidence            9999999999999999999999999999999999999999999986  13889999999999999999999999999999


Q ss_pred             hhCCCCcCcHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHhhccccCCCccchhHHHHH
Q 010986          160 MYSRDDLHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSK  239 (496)
Q Consensus       160 ~y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~lsrWw~~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl~~aK  239 (496)
                      +|++++++|++||||||+|||+||++||+||++++|||+++||.++|||+|+|+++||||++ |++|||++|.+|+++||
T Consensus       210 ~Y~~~~~~n~~lLelAkldfn~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~-a~~feP~~s~~Rl~~aK  288 (542)
T cd00684         210 FYEQEDDHNETLLELAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAA-GTYFEPQYSLARIALAK  288 (542)
T ss_pred             HhCCCccccHHHHHHHHHHHHHHhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHHHHHH-hcccCccchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999888999999999999999 99999999999999999


Q ss_pred             HHHHHHhhhhhcccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHH
Q 010986          240 IICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEV  319 (496)
Q Consensus       240 ~~~l~~viDD~fD~~gt~eEl~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~  319 (496)
                      +++|+|++||+||.|||.+|++.||+||+|||+++++++|+|||+||.++++++++++.++.+++++++++|++++|+++
T Consensus       289 ~~~l~~~iDD~fD~~gt~eEl~~ft~ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~  368 (542)
T cd00684         289 TIALITVIDDTYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWKDL  368 (542)
T ss_pred             HHHHHhhhHhhhccCCCHHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998888888889999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCccchhh
Q 010986          320 ILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKF  399 (496)
Q Consensus       320 ~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~k  399 (496)
                      ++||++||+|+++||+||++|||++|++|+|+++++++++++||+.+|+++++|+..+|+++++++.++||+|||+||++
T Consensus       369 ~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~k  448 (542)
T cd00684         369 VKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYED  448 (542)
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHHHHHHHHhcCCCCCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHH
Confidence            99999999999999999999999999999999999999999999999999999987789999999999999999999999


Q ss_pred             hhhcCCCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHhhcc-CCCChhHHHHHHHHHhhhHhhcccCCCCCCC
Q 010986          400 EQKRGHIPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNL-IAMPLPLLGPVLNLARMSEFIYEDGVDRYTN  478 (496)
Q Consensus       400 E~~rG~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln~~~~l~~-~~~p~~~~~~~~n~aR~~~~~Y~~~~D~~t~  478 (496)
                      |+++|+++|+|.|||+|+|+|+|+|+++++++|+++||++| ++++++ +++|++|+++++|+||+++++|+++ ||||.
T Consensus       449 E~~rGdv~n~V~~ymke~g~s~eeA~~~i~~~ie~~wk~ln-~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~-D~~t~  526 (542)
T cd00684         449 EMKRGDVASSIECYMKEYGVSEEEAREEIKKMIEDAWKELN-EEFLKPSSDVPRPIKQRFLNLARVIDVFYKEG-DGFTH  526 (542)
T ss_pred             HHhcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCC-CCCCC
Confidence            99999999999999999999999999999999999999999 999998 7899999999999999999999999 99999


Q ss_pred             Chh-HHHHHHHhhcCC
Q 010986          479 SYK-MKDQVALVLKDP  493 (496)
Q Consensus       479 ~~~-~k~~i~~l~~~p  493 (496)
                      |+. ||++|++||++|
T Consensus       527 ~~~~~~~~i~~ll~~p  542 (542)
T cd00684         527 PEGEIKDHITSLLFEP  542 (542)
T ss_pred             ccHHHHHHHHHHhcCC
Confidence            976 999999999998

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 Back     alignment and domain information
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>TIGR03464 HpnC squalene synthase HpnC Back     alignment and domain information
>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head Back     alignment and domain information
>PLN02632 phytoene synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query496
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 1e-114
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-101
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-100
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-100
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 1e-100
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-100
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 2e-99
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 2e-98
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 2e-98
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 6e-97
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 2e-72
2j5c_A569 Rational Conversion Of Substrate And Product Specif 2e-71
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 4e-68
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 3e-67
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 8e-59
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 2e-50
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 2e-47
3pya_A727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 2e-09
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure 
Iteration: 1

 Score =  409 bits (1052), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/497 (43%), Positives = 304/497 (61%), Gaps = 5/497 (1%)
Query: 1   MITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLL 60
           MI + +   + KL  ID+VQRLGV+Y F KEIEDEL+ + ++     ++LYT S+RFRLL
Sbjct: 62  MIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSIRFRLL 121
Query: 61  RQQRVKISCDVXXXXXXXXXXXXASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTH 120
           R+    +SCDV            +S+ ++VRG+L LY+A++L VHGE ILDEAI FTT H
Sbjct: 122 REHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHH 181
Query: 121 LKSMISRVISNNLAEQIQHXXXXXXXXXXXXXXXXYYLNMYSRDDLHDETLLKFAKLDFN 180
           L S+    + + L+E++ H                +YL++Y   + H++ LL+FAK+DFN
Sbjct: 182 L-SLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFN 240
Query: 181 LLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKI 240
           +LQ  H+KELS++ RWWKDLD   KLPYARDR+VE YFW + GVY EP+Y+ GR +++K+
Sbjct: 241 MLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFW-ISGVYFEPQYSLGRKMLTKV 299
Query: 241 ICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEEL 300
           I + S++DDT+D+Y T+EEL  +T A++RWD    D +P  MK  Y  LL VY E  + +
Sbjct: 300 IAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLV 359
Query: 301 AKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFL 360
           A+ GR Y + YAK  M  +   Y  EAKW  + Y PS EE+K+ AL +     +   SF+
Sbjct: 360 AEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFV 419
Query: 361 DMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVS 420
            MGDI T E F+W    PKII AS  ICR +DDVA HKF+ +R    SA+ECYM+++ V+
Sbjct: 420 GMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVT 479
Query: 421 EEEAEKALWLEIANGWKDLNYEEXXXXXXXXXXXXGPVLNLARMSEFIYEDGVDRYTNSY 480
            +EA       + + WKDLN +E               LNLAR+ + +Y +G D YT   
Sbjct: 480 AQEAYDVFNKHVESAWKDLN-QEFLKPTEMPTEVLNRSLNLARVMDVLYREG-DGYTYVG 537
Query: 481 K-MKDQVALVLKDPVTF 496
           K  K  +  +L +P+  
Sbjct: 538 KAAKGGITSLLIEPIAL 554
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query496
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 1e-172
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 1e-169
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 1e-167
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 1e-167
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 1e-166
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 1e-161
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 1e-145
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 1e-144
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 1e-140
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 7e-93
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 3e-32
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 3e-29
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 5e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 3e-11
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 1e-05
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
 Score =  496 bits (1278), Expect = e-172
 Identities = 234/495 (47%), Positives = 331/495 (66%), Gaps = 5/495 (1%)

Query: 1   MITSAVDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLL 60
           MI + +   + KL  ID+VQRLGV+Y F KEIEDEL+ + ++     ++LYT S+RFRLL
Sbjct: 62  MIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSIRFRLL 121

Query: 61  RQQRVKISCDVFEKFKDDEGKFKASMINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTH 120
           R+    +SCDVF KFKD++G FK+S+ ++VRG+L LY+A++L VHGE ILDEAI FTT H
Sbjct: 122 REHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHH 181

Query: 121 LKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDDLHDETLLKFAKLDFN 180
           L   ++  + + L+E++ HAL+  +R+ LPR+EAR+YL++Y   + H++ LL+FAK+DFN
Sbjct: 182 LSLAVAS-LDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFN 240

Query: 181 LLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKI 240
           +LQ  H+KELS++ RWWKDLD   KLPYARDR+VE YFW   GVY EP+Y+ GR +++K+
Sbjct: 241 MLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWI-SGVYFEPQYSLGRKMLTKV 299

Query: 241 ICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEEL 300
           I + S++DDT+D+Y T+EEL  +T A++RWD    D +P  MK  Y  LL VY E  + +
Sbjct: 300 IAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLV 359

Query: 301 AKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFL 360
           A+ GR Y + YAK  M  +   Y  EAKW  + Y PS EE+K+ AL +     +   SF+
Sbjct: 360 AEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFV 419

Query: 361 DMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIPSAVECYMKQHVVS 420
            MGDI T E F+W    PKII AS  ICR +DDVA HKF+ +R    SA+ECYM+++ V+
Sbjct: 420 GMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVT 479

Query: 421 EEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSY 480
            +EA       + + WKDLN +E L    MP  +L   LNLAR+ + +Y +G D YT   
Sbjct: 480 AQEAYDVFNKHVESAWKDLN-QEFLKPTEMPTEVLNRSLNLARVMDVLYREG-DGYTYVG 537

Query: 481 K-MKDQVALVLKDPV 494
           K  K  +  +L +P+
Sbjct: 538 KAAKGGITSLLIEPI 552
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Length = 300 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query496
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 100.0
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 100.0
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 99.76
3acx_A293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 92.12
4hd1_A294 Squalene synthase HPNC; MCSG, structural genomics, 90.04
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 87.0
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 85.44
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=2.8e-158  Score=1270.46  Aligned_cols=487  Identities=48%  Similarity=0.850  Sum_probs=462.5

Q ss_pred             ccchhhhhhHhHHHHhhCcccccHHHHHHHHHHHHhccCCCCCCchhhhHHHHHhhhcCcccchhhhccccccccccccc
Q 010986            6 VDEISHKLHLIDAVQRLGVAYQFEKEIEDELQKLANDLGSDSDNLYTVSLRFRLLRQQRVKISCDVFEKFKDDEGKFKAS   85 (496)
Q Consensus         6 ~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~F~~~   85 (496)
                      ..|++++|+|||+||||||+|||++||+++|++||+++.....||++|||+|||||||||+||||||++|+|++|+|+++
T Consensus        67 ~~~~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~  146 (554)
T 3g4d_A           67 MANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSS  146 (554)
T ss_dssp             CSSHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHH
T ss_pred             ccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccc
Confidence            56899999999999999999999999999999999851112379999999999999999999999999999999999999


Q ss_pred             cccchHHHHHHHHhhccccCCchHHHHHHHHHHHHHHhHhhhccCCchHHHHHHHccCccccccchhHHHhhHHhhCCCC
Q 010986           86 MINNVRGMLSLYEAAHLAVHGEVILDEAIVFTTTHLKSMISRVISNNLAEQIQHALRLPLRKALPRLEARYYLNMYSRDD  165 (496)
Q Consensus        86 ~~~d~~gll~Ly~As~l~~~gE~iL~ea~~ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~y~~~~  165 (496)
                      +.+|++||||||||||+++|||+|||||+.||++||++.+.++ +++|+++|+|||++|||+++||||||+||++|++++
T Consensus       147 l~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~-~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~  225 (554)
T 3g4d_A          147 VTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASL-DHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIE  225 (554)
T ss_dssp             HHHCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHSTTC-CTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSST
T ss_pred             cccchHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhcc-CchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcCc
Confidence            9999999999999999999999999999999999999988766 788999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHhhccccCCCccchhHHHHHHHHHHH
Q 010986          166 LHDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLIS  245 (496)
Q Consensus       166 ~~n~~lLelAkldFn~~Q~~hq~El~~lsrWw~~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl~~aK~~~l~~  245 (496)
                      ++|++||||||||||+||++||+||++++|||+++||.++|||+|||++|||||++ |++|||+||.+|+++||+++|++
T Consensus       226 ~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~-~~~feP~~s~~R~~~aK~~~l~t  304 (554)
T 3g4d_A          226 SHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWIS-GVYFEPQYSLGRKMLTKVIAMAS  304 (554)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHH-HHCCSGGGHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHHHHHH-HhhCCccccHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999997789999999999999999 99999999999999999999999


Q ss_pred             hhhhhcccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHH
Q 010986          246 LIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFT  325 (496)
Q Consensus       246 viDD~fD~~gt~eEl~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~  325 (496)
                      ++||+||+|||+|||+.||+||+|||++++++||+|||+||.+++++++|++.++.++||+++++|++++|+++++||++
T Consensus       305 viDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~  384 (554)
T 3g4d_A          305 IVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLV  384 (554)
T ss_dssp             HHHHHHTSSCCHHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998888999889999999999999999999


Q ss_pred             HHHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCccchhhhhhcCC
Q 010986          326 EAKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGH  405 (496)
Q Consensus       326 EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~  405 (496)
                      ||+|+++||+||+||||+||++|+|+++++++++++||+.+|+++++|+.++|+|+++++.|+||+|||+||++|+++|+
T Consensus       385 EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~  464 (554)
T 3g4d_A          385 EAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRRED  464 (554)
T ss_dssp             HHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCCChhHHHHHHHHHhhhHhhcccCCCCCCCChh-HHH
Q 010986          406 IPSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYK-MKD  484 (496)
Q Consensus       406 ~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln~~~~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~~D~~t~~~~-~k~  484 (496)
                      ++|+|+|||+|+|+|+|+|+++++++|+++||+|| ++|++++++|++|+++++|+||++++||+++ ||||.|+. ||+
T Consensus       465 van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN-~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~-Dg~t~~~~~~k~  542 (554)
T 3g4d_A          465 DCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLN-QEFLKPTEMPTEVLNRSLNLARVMDVLYREG-DGYTYVGKAAKG  542 (554)
T ss_dssp             CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH-HHHSSSCSSCHHHHHHHHHHHHHHHHHSCC------CCCHHHHH
T ss_pred             ccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHHhcCC-CCCCCccHHHHH
Confidence            99999999999999999999999999999999999 9999988999999999999999999999999 99999965 999


Q ss_pred             HHHHhhcCCcCC
Q 010986          485 QVALVLKDPVTF  496 (496)
Q Consensus       485 ~i~~l~~~pi~~  496 (496)
                      +|++||++|||+
T Consensus       543 ~i~~ll~~Pi~l  554 (554)
T 3g4d_A          543 GITSLLIEPIAL  554 (554)
T ss_dssp             HHHHHHTCCCCC
T ss_pred             HHHHHhcCCCCC
Confidence            999999999986
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Back     alignment and structure
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 496
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-127
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 1e-126
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 5e-58
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 1e-55
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 2e-46
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 2e-31
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  371 bits (955), Expect = e-127
 Identities = 109/328 (33%), Positives = 186/328 (56%), Gaps = 5/328 (1%)

Query: 169 ETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEP 228
             + + AKL+FN++QA HQ+EL D++RWW  L  P KLP+ RDR+VE +FW  VG++   
Sbjct: 3   PLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWA-VGMFEPH 61

Query: 229 KYTFGRILVSKIICLISLIDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNK 288
           ++ + R + + II L ++IDD +D YGT +EL LFT+  KRWDT     LP  M+  Y  
Sbjct: 62  QHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWG 121

Query: 289 LLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTEAKWLKEGYVPSVEEYKSVALRS 348
           +    ++A  ++ K+   + + Y ++++ +++  YF EAKW   GY PS++EY ++A  S
Sbjct: 122 VHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKIS 181

Query: 349 IAVLPVVTASFLDMGD-IATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHIP 407
           +A   +++ ++    +      V + + +   I+  +  I RL DD+ +  FE  RG +P
Sbjct: 182 VASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVP 241

Query: 408 SAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEF 467
             ++CYMK+   SEEEA + +   I   WKD+N   +      P  ++    N+ R+++F
Sbjct: 242 KTIQCYMKETNASEEEAVEHVKFLIREAWKDMN-TAIAAGYPFPDGMVAGAANIGRVAQF 300

Query: 468 IYEDGVDRYTNSYK-MKDQVALVLKDPV 494
           IY  G D +   +    + +A +L +P 
Sbjct: 301 IYLHG-DGFGVQHSKTYEHIAGLLFEPY 327
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query496
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 100.0
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.97
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 99.47
d1ezfa_333 Squalene synthase {Human (Homo sapiens) [TaxId: 96 83.64
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=3e-100  Score=776.16  Aligned_cols=327  Identities=46%  Similarity=0.801  Sum_probs=310.3

Q ss_pred             CcHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHhhccccCCCccchhHHHHHHHHHHHh
Q 010986          167 HDETLLKFAKLDFNLLQAAHQKELSDMTRWWKDLDIPTKLPYARDRMVEVYFWTLVGVYCEPKYTFGRILVSKIICLISL  246 (496)
Q Consensus       167 ~n~~lLelAkldFn~~Q~~hq~El~~lsrWw~~~~l~~~l~faRdr~ve~yf~~~~a~~~eP~~s~~Rl~~aK~~~l~~v  246 (496)
                      .|++||||||||||+||++||+||+.++|||+++|+.++|||+|||++|||||++ |++|||+||.+|++|||+++++++
T Consensus         1 ~N~~lLelAKlDFN~~Q~~hq~El~~l~rWw~~~~l~~~l~~aRdr~ve~Yfw~~-~~~fEP~~s~~R~~~aK~~~l~ti   79 (328)
T d5easa2           1 KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWAL-GVYFEPQYSQARVMLVKTISMISI   79 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHH-HHCCSGGGHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCcccCCchHHHHHHHHHHHH-HhhcChhhHHHHHHHHHHHHHHHh
Confidence            5999999999999999999999999999999999997789999999999999999 999999999999999999999999


Q ss_pred             hhhhcccCCCHHHHHHHHHHhhhcCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHH
Q 010986          247 IDDTFDAYGTFEELTLFTEAVKRWDTNVTDTLPACMKFIYNKLLGVYNEAEEELAKQGRSYGIPYAKQTMQEVILMYFTE  326 (496)
Q Consensus       247 iDD~fD~~gt~eEl~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~E  326 (496)
                      +||+||+|||+||++.||+||+|||.++++.||+|||++|.++++++++++.++.++||++++++++++|++++++|++|
T Consensus        80 ~DD~yD~ygt~eEl~~ft~ai~rWd~~~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~l~E  159 (328)
T d5easa2          80 VDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVE  159 (328)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHTCSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCCCHHHHHHHHHHHhcCCcchhhhCCchHHHHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999888888899999999999999999999


Q ss_pred             HHHhhCCCCCCHHHhhhhhhhccchHHHHHHHHHhcCCCCCHHHHHhhhchhHHHHHHHHHHHHhcCccchhhhhhcCCC
Q 010986          327 AKWLKEGYVPSVEEYKSVALRSIAVLPVVTASFLDMGDIATKEVFEWVLKVPKIITASENICRLLDDVASHKFEQKRGHI  406 (496)
Q Consensus       327 A~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~  406 (496)
                      |+|+++||+||+||||++|.+|+|+++++++++++||. ++++.++|+.++|+++++++.|+||+|||+|+++|+++|++
T Consensus       160 A~W~~~g~vPt~eEYl~~~~~s~~~~~l~~~~~~~~g~-~~~e~~~~~~~~p~l~~~~~~i~RL~NDi~s~~~E~~rG~~  238 (328)
T d5easa2         160 STWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQI  238 (328)
T ss_dssp             HHHHHHTCCCCHHHHHHHHTGGGCHHHHHHHHHHTCTT-CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHhCCCCCChHhhhcceeeeehHHHHHHHHHHhCCC-CcHHHHHhcccchHHHHHHHHHHHHHhhhHHHHHHhccCCC
Confidence            99999999999999999999999999999999999997 57889999999999999999999999999999999999999


Q ss_pred             cchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhHHHhhccCCCChhHHHHHHHHHhhhHhhcccCCCCCCCChh-HHHH
Q 010986          407 PSAVECYMKQHVVSEEEAEKALWLEIANGWKDLNYEELLNLIAMPLPLLGPVLNLARMSEFIYEDGVDRYTNSYK-MKDQ  485 (496)
Q Consensus       407 ~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln~~~~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~~D~~t~~~~-~k~~  485 (496)
                      +|+|+|||+|+|+|+|||+++++++|+++||+|| +++++++++|++|+++++|+||+++++|+++.||||+|++ ||++
T Consensus       239 ~s~I~cym~e~g~t~EeA~~~i~~~ie~~wk~ln-~e~l~~~~~~~~~~~~~~n~ar~~~~~Y~~~~D~yt~~~~~~k~~  317 (328)
T d5easa2         239 ATGIECCMRDYGISTKEAMAKFQNMAETAWKDIN-EGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPH  317 (328)
T ss_dssp             TCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH-HHTSSSCSSCGGGTHHHHHHHHHHHHHTC-----------CCHHH
T ss_pred             CeeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHH
Confidence            9999999999999999999999999999999999 9999999999999999999999999999976699999987 9999


Q ss_pred             HHHhhcCCcCC
Q 010986          486 VALVLKDPVTF  496 (496)
Q Consensus       486 i~~l~~~pi~~  496 (496)
                      |++||++|||+
T Consensus       318 i~~ll~epi~~  328 (328)
T d5easa2         318 IINLLVDSIKI  328 (328)
T ss_dssp             HHHHHTCCCCC
T ss_pred             HHHHhccCCcC
Confidence            99999999996
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure