Citrus Sinensis ID: 010995

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490------
Protein Sequence
MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNERNNSETQNFLLEPLLALTLTQTEAMSSLHKCDIPKQLYLSGKLGIPEAIL
Secondary Structure (PSIPRED)
ccccccccEEEEcccHHHHHHHHHHHHcccccEEEEccccccccccccEEEccEEEEcccEEEEccccccccHHHHHHHHccccEEEEcccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccEEEcccEEEEEEccccEEEEEccccEEEccEEEEEcccHHHHcccccccccccHHHHHHHHcccccEEEEEEEEccccccccccccEEEEEEcccccEEEEEEEcccccccccEEEEEEccHHHHHHHcccHHHHHHHHHHHHHHHHccccccccEEEccccccccccccccccccccccHHHHHHHHcccccEEEccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEcccHHHHHHHHHHHHccccEEEEEcccccccccccEEEEccEEEEccccEEEEEcccccccHHHHHHcccccEEEcccccccccEEcccccEccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccHEEccccccHcccccccccccEEccccccHHHHHHccEccccEEccccEEEEEEEccEEEEEEccccEEEEcEEEEcccHHHHHHcccEEEccccHHHHHHHHHcEEEcEEEEEEEcccccccccccccEEEEEccccccccEEEEcccccccccEEEEEEEHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccEEEcccccccccccccEEEcEccccHHHHHHHHccEccEEEccHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHcccccccccEEEEEccccccHHcc
Coil and Loop (DISEMBL)
mdstsrspviIIGAGVSGISAGKILAENGIEDILILEASdriggrvrnekfggvsvelgagwiagvggkesnpvwelasksglrtcfsdytnaryniydrsgkiipsgvaaDSYKKAVESAIANLKNLEATNSNIGEVIKAatelpsspktplELAIDFILhdfemaevepistyvdfgerefLVADERGYAHLLYKMAEEFlstsdgkildNRLKLNKVVRELQhsrngvtvktedgcvyeANYVILSASIGVLqsdlisfkpplpkwkteaiekCDVMVYTKIFLkfpckfwpcspgkeffiyaHERRGYYTFWQHMENAYPGSNILVVTLTngeskrveaqpdeETLKEAMEVLQDmfgpdipnatdilvprwwnnrfqrgsysnypiisdnqlvnsirapvagifftgehtserfngyvhggylagIDTGKAVVEKIRKDnernnsetqNFLLEPLLALTLTQTEAMsslhkcdipkqlylsgklgipeail
Flexible Loop (DISEMBL)
mdstsrspviiigagvsgisaGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGwiagvggkesnPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAAtelpsspktPLELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFlstsdgkildNRLKLNKVVrelqhsrngvtvktedgcVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDnernnsetqnfLLEPLLALTLTQTEAMSSLHKCdipkqlylsgklgipeail
Low Complexity Region (SEG)
MDSTSRSPviiigagvsgisagKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNERNNSETQNFllepllaltltqteaMSSLHKCDIPKQLYLSGKLGIPEAIL
Disordered region (IsUnstruct)
********VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKA**********PLELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLT*********************VLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKI************NFLLEPLLALTLTQTEAMSSLHKCDIPKQLYLSGKLG******
Disordered Region (DISOPRED)
*****RS**IIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEK********************LALTLTQTEAMSSLHKCDIPKQLYLSGKLGIPEAIL
Disordered Region (DISEMBL)
MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNERNNSETQNFLLEPLLALTLTQTEAMSSLHKCDIPKQLYLSGKLGIPEAIL
Disordered Region (DISPRO)
*****RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNERNNS*TQNFLLEPLLALTLTQTEAMSSLHKCDIPKQLYLSGKLGIPEAIL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAxxxxxxxxxxxxxxxxxxxxxNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNERNNSETQNFLLEPLLALTLTQTEAMSSLHKCDIPKQLYLSGKLGIPEAIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	496	2.2.26 [Sep-21-2011]
Q9FNA2	472	Polyamine oxidase 1 OS=Ar	yes	no	0.903	0.949	0.747	0.0
O64411	500	Polyamine oxidase OS=Zea	N/A	no	0.877	0.87	0.482	1e-124
Q9LYT1	488	Polyamine oxidase 3 OS=Ar	no	no	0.808	0.821	0.283	2e-36
Q8H191	497	Probable polyamine oxidas	no	no	0.832	0.830	0.283	6e-35
Q9SKX5	490	Probable polyamine oxidas	no	no	0.780	0.789	0.286	2e-32
Q8VXV7	844	Lysine-specific histone d	no	no	0.816	0.479	0.239	3e-26
Q9CAE3	789	Lysine-specific histone d	no	no	0.846	0.532	0.230	1e-23
Q8C0L6	504	Peroxisomal N(1)-acetyl-s	yes	no	0.828	0.815	0.251	3e-23
Q8NB78	822	Lysine-specific histone d	yes	no	0.810	0.489	0.271	2e-22
Q8CIG3	826	Lysine-specific histone d	no	no	0.760	0.456	0.255	9e-22

>sp|Q9FNA2|PAO1_ARATH Polyamine oxidase 1 OS=Arabidopsis thaliana GN=PAO1 PE=1 SV=1

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/467 (74%), Positives = 398/467 (85%), Gaps = 19/467 (4%)

Query: 23  KILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSG 82
           K+L ENG+ED+LILEA+DRIGGR+  + FG V VELGAGWIAGVGGKESNPVWELAS+  
Sbjct: 20  KVLVENGVEDVLILEATDRIGGRIHKQNFGDVPVELGAGWIAGVGGKESNPVWELASRFN 79

Query: 83  LRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAA 142
           LRTCFSDYTNAR+NIYDRSGKI P+G+A+DSYKKAV+SAI  LK+LEA  S  G+V   A
Sbjct: 80  LRTCFSDYTNARFNIYDRSGKIFPTGIASDSYKKAVDSAILKLKSLEAQCS--GQV---A 134

Query: 143 TELPSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEF 202
            E PSSPKTP+ELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGY  LLYKMAEEF
Sbjct: 135 EEAPSSPKTPIELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYECLLYKMAEEF 194

Query: 203 LSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISF 262
           L TS G ILD RLKLN+VVRE+Q SRNGV VKTEDG VYEANYVI+SASIGVLQSDL+SF
Sbjct: 195 LVTSHGNILDYRLKLNQVVREVQQSRNGVVVKTEDGSVYEANYVIVSASIGVLQSDLLSF 254

Query: 263 KPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENA 322
           +P LP+WKTEAI+KCDVMVYTKIFLKFP  FWPC PG+EFFIYAHE+RGY+TFWQHMENA
Sbjct: 255 QPLLPRWKTEAIQKCDVMVYTKIFLKFPQCFWPCGPGQEFFIYAHEQRGYFTFWQHMENA 314

Query: 323 YPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQ 382
           YPGSNILVVTLTN +SKRVEAQ D+ET+KEAM VL+DMFG  IP ATDILVPRWWNNRFQ
Sbjct: 315 YPGSNILVVTLTNEQSKRVEAQSDQETMKEAMSVLRDMFGATIPYATDILVPRWWNNRFQ 374

Query: 383 RGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIR 442
           RGSYSNYP+ISDNQL+ +I+APV  IFFTGEHTSE+F+GYVHGGYLAGIDT K+++E+++
Sbjct: 375 RGSYSNYPMISDNQLLQNIKAPVGRIFFTGEHTSEKFSGYVHGGYLAGIDTSKSLLEEMK 434

Query: 443 KDNERNNSETQNFLLEPLLALTLTQTEAMSSLHKCDIPKQLYLSGKL 489
                     Q+ LL+PLLA     TE+++  H+     Q+Y + K 
Sbjct: 435 ----------QSLLLQPLLAF----TESLTLTHQKPNNSQIYTNVKF 467

Flavoenzyme that catalyzes the oxidation of the secondary amino group of spermine, norspermine and N(1)-acetylspermine. Substrate preference is norspermine > spermine > N(1)-acetylspermine. No activity detected when putrescine, spermidine or N(1)-acetylspermidine are used as substrates. Plays an important role in the regulation of polyamine intracellular concentration.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 5EC: .EC: 3EC: .EC: 1EC: 6

>sp|O64411|PAO_MAIZE Polyamine oxidase OS=Zea mays GN=PAO PE=1 SV=1

 Score =  445 bits (1145), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/454 (48%), Positives = 305/454 (67%), Gaps = 19/454 (4%)

Query: 9   VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGG 68
           VI++GAG+SGISA K L+E GI D+LILEA+D IGGR+    F G++VELGA W+ GV G
Sbjct: 35  VIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNG 94

Query: 69  KESNPVWELASKS-GLRTCFSDYTNARYNIYDRSGKIIPSGVA------ADSYKKAVESA 121
            + NP+W + + +  LR   SD+     N+Y   G +            ADS ++  E  
Sbjct: 95  GKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKL 154

Query: 122 IANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAE---------VEPI 172
            A L      + +I  + +     P+ P TP+++ +D+   D+E AE           P+
Sbjct: 155 SATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVPL 214

Query: 173 STYVDFGEREFLVADERGYAHLLYKMAEEFLSTSD--GKILDNRLKLNKVVRELQHSRNG 230
           +T+ DFG+  + VAD+RGY  ++Y +A ++L T D  GKI+D RL+LNKVVRE+++S  G
Sbjct: 215 ATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGG 274

Query: 231 VTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFP 290
           VTVKTED  VY A+YV++SAS+GVLQSDLI FKP LP WK  AI + D+ VYTKIFLKFP
Sbjct: 275 VTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFP 334

Query: 291 CKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETL 350
            KFWP   G+EFF+YA  RRGYY  WQ  E  YP +N+L+VT+T+ ES+R+E Q DE+T 
Sbjct: 335 RKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTK 394

Query: 351 KEAMEVLQDMF-GPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIF 409
            E M+VL+ MF G D+P+ATDILVPRWW++RF +G++SN+P+  +    + +RAPV  ++
Sbjct: 395 AEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVY 454

Query: 410 FTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRK 443
           FTGEHTSE +NGYVHG YL+GID+ + ++   +K
Sbjct: 455 FTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQK 488

Catalyzes the oxidation of the secondary amino group of polyamines (spermine, spermidine and their acetyl derivatives). Plays an important role in the regulation of polyamine intracellular concentration.

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|Q9LYT1|PAO3_ARATH Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO3 PE=1 SV=1

 Score =  153 bits (387), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 128/451 (28%), Positives = 217/451 (48%), Gaps = 50/451 (11%)

Query: 6   RSP-VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIA 64
           RSP VI+IG G++GISA + L +   + +++LE+ DRIGGRV  +   G  V+LGA W+ 
Sbjct: 27  RSPSVIVIGGGMAGISAARTLQDASFQ-VVVLESRDRIGGRVHTDYSFGFPVDLGASWLH 85

Query: 65  GVGGKESNPVWELASKSGL--------RTCFSDYTNARYNIYDRSGKIIPSGVA---ADS 113
           GV   + NP+  +  + GL         +   D+    Y ++D++G  +   +     ++
Sbjct: 86  GVC--KENPLAAVIGRLGLPLYRTSGDNSVLYDHDLESYALFDKAGNQVSQELVTKVGEN 143

Query: 114 YKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLE-LAIDFI------LHDFEM 166
           ++  +E  I  +++ +  + +I +          +P+  LE LA + +      +  +  
Sbjct: 144 FEHILEE-ICKVRDEQDEDMSIAQAFSIV--FKRNPELRLEGLAHNVLQWYLCRMEGWFA 200

Query: 167 AEVEPISTYVDFGEREFLVADE----RGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVR 222
           A+ E IS    + + E L        RGY  ++  ++         K LD  ++L+  + 
Sbjct: 201 ADAETISAKC-WDQEELLPGGHGLMVRGYRPVINTLS---------KGLD--IRLSHRIT 248

Query: 223 ELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVY 282
           ++    +GV V TE G  + A+  +++  +GVL+S +I+F+P LP+WK EAI    V + 
Sbjct: 249 KISRRYSGVKVTTEKGDTFVADAAVIALPLGVLKSGMITFEPKLPQWKQEAINDLGVGIE 308

Query: 283 TKIFLKFPCKFWPCSPGKEFF-IYAHERRGYYTFWQ-HMENAYPGSNILVVTLTNGESKR 340
            KI L F   FW   P  EF  + A    G   F   H   ++P   +LV       ++ 
Sbjct: 309 NKIILNFDNVFW---PNVEFLGVVAETSYGCSYFLNLHKATSHP---VLVYMPAGQLARD 362

Query: 341 VEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNS 400
           +E + DE     A   LQ +  PD  +  + LV RW ++    GSYS   +   + L   
Sbjct: 363 IEKKSDEAAANFAFSQLQKIL-PDASSPINYLVSRWGSDINSLGSYSYDIVNKPHDLYER 421

Query: 401 IRAPVAGIFFTGEHTSERFNGYVHGGYLAGI 431
           +R P+  +FF GE TS  + G VHG Y  G+
Sbjct: 422 LRVPLDNLFFAGEATSSSYPGSVHGAYSTGV 452

Flavoenzyme that catalyzes the sequential oxidation of spermine to spermidine, and of spermidine to putrescine. Substrate preference is spermidine > spermine > N(1)-acetylspermidine > N(1)-acetylspermine. No activity detected when diamines (agmatine, cadaverine or putrescine) or N(8)-acetylspermidine are used as substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: 7

>sp|Q8H191|PAO4_ARATH Probable polyamine oxidase 4 OS=Arabidopsis thaliana GN=PAO4 PE=1 SV=1

 Score =  149 bits (375), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 125/441 (28%), Positives = 205/441 (46%), Gaps = 28/441 (6%)

Query: 9   VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGG 68
           VI+IG+G+SG++A + L+E   + + +LE+ DRIGGR+  +   G  V++GA W+ GV  
Sbjct: 31  VIVIGSGISGLAAARNLSEASFK-VTVLESRDRIGGRIHTDYSFGCPVDMGASWLHGV-- 87

Query: 69  KESNPVWELASKSGLR--------TCFSDYTNARYNIYDRSGKIIPSGVA---ADSYKKA 117
            + NP+  +  + GL         +   D+    Y ++D  G  IP  +     D++K+ 
Sbjct: 88  SDENPLAPIIRRLGLTLYRTSGDDSILYDHDLESYGLFDMHGNKIPPQLVTKVGDAFKRI 147

Query: 118 VESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAEVEPISTYVD 177
           +E     +++  A + ++ + I     L  +P+   E  + + +  + +  +E     VD
Sbjct: 148 LEET-EKIRDETANDMSVLQGISIV--LDRNPELRQE-GMAYEVLQWYLCRMEAWFA-VD 202

Query: 178 FGEREFLVADER---GYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVK 234
                    D+       H L     E +  +  K LD RL  ++V + ++ S N V V 
Sbjct: 203 ANLISLKCWDQDECLSGGHGLMVQGYEPVIRTIAKDLDIRLN-HRVTKVVRTSNNKVIVA 261

Query: 235 TEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFW 294
            E G  + A+ VI++  IGVL+++LI F+P LP+WKT AI    V    KI L+F   FW
Sbjct: 262 VEGGTNFVADAVIITVPIGVLKANLIQFEPELPQWKTSAISGLGVGNENKIALRFDRAFW 321

Query: 295 PCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAM 354
              P  EF            ++ ++  A  G  +LV       ++ +E   DE T    M
Sbjct: 322 ---PNVEFLGMVAPTSYACGYFLNLHKA-TGHPVLVYMAAGNLAQDLEKLSDEATANFVM 377

Query: 355 EVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEH 414
             L+ MF PD P+    LV RW  +    G Y+   +     L   +  PV  IFF GE 
Sbjct: 378 LQLKKMF-PDAPDPAQYLVTRWGTDPNTLGCYAYDVVGMPEDLYPRLGEPVDNIFFGGEA 436

Query: 415 TSERFNGYVHGGYLAGIDTGK 435
            +    G  HG +LAG+   +
Sbjct: 437 VNVEHQGSAHGAFLAGVSASQ 457

Flavoenzyme that catalyzes the oxidation of the secondary amino group of spermine. No activity detected when spermidine, putrescine or N(1)-acetylspermine are used as substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q9SKX5|PAO2_ARATH Probable polyamine oxidase 2 OS=Arabidopsis thaliana GN=PAO2 PE=2 SV=1

 Score =  140 bits (354), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 125/436 (28%), Positives = 200/436 (45%), Gaps = 49/436 (11%)

Query: 20  SAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELAS 79
           SA + L +   + +++LE+ DRIGGRV  +   G  V+LGA W+ GV   + NP+  +  
Sbjct: 41  SAARTLQDASFQ-VMVLESRDRIGGRVHTDYSFGFPVDLGASWLHGVC--KENPLAPVIG 97

Query: 80  KSGL--------RTCFSDYTNARYNIYDRSGKIIPSGVAAD---SYKKAVESAIANLKNL 128
           + GL         +   D+    Y ++D  G  +P  +      ++++ +E  I  +++ 
Sbjct: 98  RLGLPLYRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTQIGVTFERILEE-INKVRDE 156

Query: 129 EATNSNIGEVIKAATELPSSPKTPLE-LAIDFI------LHDFEMAEVEPISTYVDFGER 181
           +  + +I +           P+  LE LA + +      +  +  A+ E IS    + + 
Sbjct: 157 QDADISISQAFSIV--FSRKPELRLEGLAHNVLQWYVCRMEGWFAADAETISAKC-WDQE 213

Query: 182 EFLVADE----RGYAHLLYKMAEEFLSTSDGKILDNRL--KLNKVVRELQHSRNGVTVKT 235
           E L        RGY  ++  +A         K LD R+  ++ K+VR      NGV V T
Sbjct: 214 ELLPGGHGLMVRGYRPVINTLA---------KGLDIRVGHRVTKIVRRY----NGVKVTT 260

Query: 236 EDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWP 295
           E+G  + A+  +++  +GVL+S  I F+P LP+WK EAI    V +  KI L F   FW 
Sbjct: 261 ENGQTFVADAAVIAVPLGVLKSGTIKFEPKLPEWKQEAINDLGVGIENKIILHFEKVFW- 319

Query: 296 CSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAME 355
             P  EF     E     +++ ++  A  G  +LV       +K +E   DE     A+ 
Sbjct: 320 --PKVEFLGVVAETSYGCSYFLNLHKA-TGHPVLVYMPAGQLAKDIEKMSDEAAANFAVL 376

Query: 356 VLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHT 415
            LQ +  PD       LV RW ++    GSYS   +   + L   +R PV  +FF GE T
Sbjct: 377 QLQRIL-PDALPPVQYLVSRWGSDVNSMGSYSYDIVGKPHDLYERLRVPVDNLFFAGEAT 435

Query: 416 SERFNGYVHGGYLAGI 431
           S  F G VHG Y  G+
Sbjct: 436 SSSFPGSVHGAYSTGL 451

Flavoenzyme that catalyzes the oxidation of the secondary amino group of polyamines.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: -

>sp|Q8VXV7|LDL1_ARATH Lysine-specific histone demethylase 1 homolog 1 OS=Arabidopsis thaliana GN=LDL1 PE=1 SV=1

 Score =  120 bits (301), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 113/472 (23%), Positives = 207/472 (43%), Gaps = 67/472 (14%)

Query: 9   VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKF-GGVSVE----LGAGWI 63
           V+++GAG++G+ A + L   G   +L+LE  DR GGRV+  K  GG  VE    +G   +
Sbjct: 268 VVVVGAGLAGLVAARQLLSMGFR-VLVLEGRDRPGGRVKTRKMKGGDGVEAMADVGGSVL 326

Query: 64  AGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAAD-SYKKAVESAI 122
            G+ G   NP+  LA + GL           + + D     +P+G  AD S    +E++ 
Sbjct: 327 TGING---NPLGVLARQLGL---------PLHKVRDICPLYLPNGELADASVDSKIEASF 374

Query: 123 ANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGERE 182
             L +       + ++ ++  E   S   PL  A++     + +AE +     +D+    
Sbjct: 375 NKLLD------RVCKLRQSMIEENKSVDVPLGEALETFRLVYGVAEDQQERMLLDW---- 424

Query: 183 FLVADERGYAHLLYKMAEEFLSTSD--------------GKILDNRLKLN------KVVR 222
            L   E   A LL  ++  +    D               +I  + L  N        V 
Sbjct: 425 HLANLEYANATLLGNLSMAYWDQDDPYEMGGDHCFIPGGNEIFVHALAENLPIFYGSTVE 484

Query: 223 ELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVY 282
            +++  NGV V T +   +  +  + +  +GVL+   I F P LP  K EAI++    + 
Sbjct: 485 SIRYGSNGVLVYTGNK-EFHCDMALCTVPLGVLKKGSIEFYPELPHKKKEAIQRLGFGLL 543

Query: 283 TKIFLKFPCKFWPCSPGKEFFIYAH------ERRGYYTFWQHMENAYPGSNILVVTLTNG 336
            K+ + FPC FW    G+E   +         R  ++ F+ +  ++  G  +LV  +   
Sbjct: 544 NKVAMLFPCNFW----GEEIDTFGRLTEDPSTRGEFFLFYSY--SSVSGGPLLVALVAGD 597

Query: 337 ESKRVEAQPDEETLKEAMEVLQDMFGPD---IPNATDILVPRWWNNRFQRGSYSNYPIIS 393
            ++R E     +++K  +++L+ ++ P    +P+    L  RW  ++F  GSYS   + S
Sbjct: 598 AAERFETLSPTDSVKRVLQILRGIYHPKGIVVPDPVQALCSRWGQDKFSYGSYSYVAVGS 657

Query: 394 DNQLVNSIRAPVAG--IFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRK 443
                + +   V    +FF GE T+ ++   +HG +L+G+     ++   R+
Sbjct: 658 SGDDYDILAESVGDGRVFFAGEATNRQYPATMHGAFLSGMREAANILRVARR 709

Probable histone demethylase that reduces the levels of histone H3 'Lys-4' methylation in chromatin of the floral repressor FLOWERING LOCUS C (FLC) and the sporophytically silenced floral repressor FWA. Seems to act in partial redundancy with FLOWERING LOCUS D (FLD) to repress FLC expression. Required for cytosine methylation of FWA.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q9CAE3|LDL3_ARATH Lysine-specific histone demethylase 1 homolog 3 OS=Arabidopsis thaliana GN=FLD PE=1 SV=1

 Score =  111 bits (278), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 112/485 (23%), Positives = 215/485 (44%), Gaps = 65/485 (13%)

Query: 4   TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFG----GVSVELG 59
           +S+S VII+GAG+SG++A + L   G + + +LE   R GGRV  +K      G + +LG
Sbjct: 182 SSKSSVIIVGAGLSGLAAARQLMRFGFK-VTVLEGRKRPGGRVYTKKMEANRVGAAADLG 240

Query: 60  AGWIAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAAD------- 112
              + G  G   NP+  +A + G         ++ Y + D+       G   D       
Sbjct: 241 GSVLTGTLG---NPLGIIARQLG---------SSLYKVRDKCPLYRVDGKPVDPDVDIKV 288

Query: 113 --SYKKAVESA--IANLKNLEATNSNIGEVIKAATELPSSPKTPLELAI-DFILHDFEMA 167
             ++ + ++ A  +  L    + + ++G  ++   ++  +     E+ + ++ L + E A
Sbjct: 289 EVAFNQLLDKASKLRQLMGDVSMDVSLGAALETFRQVSGNDVATEEMGLFNWHLANLEYA 348

Query: 168 EVEPISTYVDFGEREFLVADERGYAHLLYKMAEE--FLSTSDGKILDNR-----LKLNKV 220
               +S         F   D+       Y M  +  FL   +G+++        +   K 
Sbjct: 349 NAGLVSKL----SLAFWDQDDP------YDMGGDHCFLPGGNGRLVQALAENVPILYEKT 398

Query: 221 VRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVM 280
           V+ +++  NGV V T    VYE + V+ +  +GVL++  I F P LP+ K + I++    
Sbjct: 399 VQTIRYGSNGVKV-TAGNQVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFG 457

Query: 281 VYTKIFLKFPCKFWPCSPGKEFFIYAHE----RRGYYTFWQHMENAYPGSNILVVTLTNG 336
           +  K+ + FP  FW  S   + F +  E    R  ++ F+ +   A  G  +L+  +   
Sbjct: 458 LLNKVAMLFPYVFW--STDLDTFGHLTEDPNYRGEFFLFYSYAPVA--GGALLIALVAGE 513

Query: 337 ESKRVEAQPDEETLKEAMEVLQDMFGP---DIPNATDILVPRWWNNRFQRGSYSNYPIIS 393
            + + E  P  + +   + +L+ ++ P   ++P+    +  RW  + F  GSYSN  + +
Sbjct: 514 AAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGA 573

Query: 394 DNQLVNSIRAPVAG--IFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEK-----IRKDNE 446
                + +   V    +FF GE T+ R+   +HG ++ G+     + +      IRK  +
Sbjct: 574 SGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAKARGIRKRID 633

Query: 447 RNNSE 451
           RN S 
Sbjct: 634 RNPSR 638

Probable histone demethylase that promotes flowering independently of the photoperiod and vernalization pathways by repressing FLOWERING LOCUS C (FLC), a floral repressor that blocks the transition from vegetative to reproductive development. Probably mediates histone H3 'Lys-4' demethylation at FLC locus. Seems to act in partial redundancy with LDL1 and LDL2 to repress FLC expression. Required for histone H4 deacetylation of FLC locus. May be a component of the histone deacetylase complex.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8C0L6|PAOX_MOUSE Peroxisomal N(1)-acetyl-spermine/spermidine oxidase OS=Mus musculus GN=Paox PE=1 SV=3

 Score =  110 bits (274), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 122/486 (25%), Positives = 208/486 (42%), Gaps = 75/486 (15%)

Query: 9   VIIIGAGVSGISAG-KILAENGIEDILILEASDRIGGRVRNEK-FGGVSVELGAGWIAGV 66
           V+++G+G++G+ A  K+ +      + +LEA+   GGR+R+E+ FGGV VELGA WI G 
Sbjct: 8   VLVVGSGIAGLGAAQKLCSHRAAPHLRVLEATASAGGRIRSERCFGGV-VELGAHWIHGP 66

Query: 67  GGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKI-IPSGVAADS------------ 113
              + NPV++LA++ GL        +    + D  G + +PS + + S            
Sbjct: 67  --SQDNPVFQLAAEFGLLG--EKELSEENQLVDTGGHVALPSMIWSSSGTSVSLELMTEM 122

Query: 114 ---YKKAVESAIANLKNLEATNSNIGEVIKA--ATELPS-------SPKTPLELAIDFI- 160
              +   +E     L   E   +++GE +K   + ++ S       + K  L +   F  
Sbjct: 123 ARLFYGLIERTREFLNESETPMASVGEFLKKEISQQVASWTEDDEDTRKRKLAILNTFFN 182

Query: 161 -------LHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDN 213
                   H  ++  + P   Y      + ++A   GY  L  ++        D    D 
Sbjct: 183 IECCVSGTHSMDLVALAPFGEYTVLPGLDCILAG--GYQGLTDRILASL--PKDTVAFDK 238

Query: 214 RLKLNKVVRELQHS-----RNGVTVKTEDGCVYEANYVILSASIGVLQSDLISF-KPPLP 267
            +K        Q +        V V+ EDG    A++VI++  +G L+    +F +PPLP
Sbjct: 239 PVKTIHWNGSFQEAAFPGETFPVLVECEDGARLPAHHVIVTVPLGFLKEHQDTFFEPPLP 298

Query: 268 KWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYY---------TFWQH 318
             K EAI+K       KIFL+F   FW   P  +F     E              T+++ 
Sbjct: 299 AKKAEAIKKLGFGTNNKIFLEFEEPFW--EPDCQFIQVVWEDTSPLQDTALSLQDTWFKK 356

Query: 319 M-----ENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFG-PDIPNATDIL 372
           +     + ++  S++L   +   ES+ +E   DEE L    +VL+ + G P +P A  + 
Sbjct: 357 LIGFLVQPSFESSHVLCGFIAGLESEFMETLSDEEVLLSLTQVLRRVTGNPQLPAAKSVR 416

Query: 373 VPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVA--------GIFFTGEHTSERFNGYVH 424
             +W +  + RGSYS   + S    ++ +  P+          + F GE T   F    H
Sbjct: 417 RSQWHSAPYTRGSYSYVAVGSTGDDLDLMAQPLPEDGTGTQLQVLFAGEATHRTFYSTTH 476

Query: 425 GGYLAG 430
           G  L+G
Sbjct: 477 GALLSG 482

Flavoenzyme which catalyzes the oxidation of N(1)-acetylspermine to spermidine and is thus involved in the polyamine back-conversion. Can also oxidize N(1)-acetylspermidine to putrescine. Substrate specificity: N(1)-acetylspermine = N(1)-acetylspermidine > N(1),N(12)-diacylspermine >> spermine. Does not oxidize spermidine. Plays an important role in the regulation of polyamine intracellular concentration and has the potential to act as a determinant of cellular sensitivity to the antitumor polyamine analogs.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: 3

>sp|Q8NB78|KDM1B_HUMAN Lysine-specific histone demethylase 1B OS=Homo sapiens GN=KDM1B PE=1 SV=3

 Score =  107 bits (268), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 122/450 (27%), Positives = 206/450 (45%), Gaps = 48/450 (10%)

Query: 9   VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEK-FGGVSVELGAGWIAGVG 67
           VIIIGAG +G++A + L   GI+ + +LEA DRIGGRV ++K F GV+V  GA     V 
Sbjct: 385 VIIIGAGPAGLAAARQLHNFGIK-VTVLEAKDRIGGRVWDDKSFKGVTVGRGA---QIVN 440

Query: 68  GKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGV--AADSYKKAVESAIANL 125
           G  +NPV  +  + G+          R ++    G+I    +    D +  A+   ++  
Sbjct: 441 GCINNPVALMCEQLGISM---HKFGERCDLIQEGGRITDPTIDKRMDFHFNALLDVVSEW 497

Query: 126 KNLEAT------NSNIGEVIKAATELPSSPKTPLE-LAIDFILHDFEMA---EVEPIST- 174
           +  +           I E+ KA  +      + LE   + F L + E A    +  +S  
Sbjct: 498 RKDKTQLQDVPLGEKIEEIYKAFIKESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSAR 557

Query: 175 -------YVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHS 227
                  +  F     L+    GY+ ++ K+AE          LD  ++L   V+ + +S
Sbjct: 558 SWDHNEFFAQFAGDHTLLTP--GYSVIIEKLAEG---------LD--IQLKSPVQCIDYS 604

Query: 228 RNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFL 287
            + V V T DG  Y A  V+++  + +LQ   I F PPL + K +AI      +  KI L
Sbjct: 605 GDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIAL 664

Query: 288 KFPCKFWPCS-PGKEFFIY---AHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEA 343
           +FP +FW     G +FF +   +  +RG +  +  M+     S +L+  +       V  
Sbjct: 665 QFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHS-VLMSVIAGEAVASVRT 723

Query: 344 QPDEETLKEAMEVLQDMFG-PDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIR 402
             D++ L++ M  L+++F   ++P+ T   V RW  + + + +YS        +  + I 
Sbjct: 724 LDDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIA 783

Query: 403 APVAG-IFFTGEHTSERFNGYVHGGYLAGI 431
             + G +FF GE T+  F   V G YL+G+
Sbjct: 784 EDIQGTVFFAGEATNRHFPQTVTGAYLSGV 813

Histone demethylase that demethylates 'Lys-4' of histone H3, a specific tag for epigenetic transcriptional activation, thereby acting as a corepressor. Required for de novo DNA methylation of a subset of imprinted genes during oogenesis. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Demethylates both mono- and di-methylated 'Lys-4' of histone H3. Has no effect on tri-methylated 'Lys-4', mono-, di- or tri-methylated 'Lys-9', mono-, di- or tri-methylated 'Lys-27', mono-, di- or tri-methylated 'Lys-36' of histone H3, or on mono-, di- or tri-methylated 'Lys-20' of histone H4.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8CIG3|KDM1B_MOUSE Lysine-specific histone demethylase 1B OS=Mus musculus GN=Kdm1b PE=1 SV=1

 Score =  105 bits (262), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 109/426 (25%), Positives = 188/426 (44%), Gaps = 49/426 (11%)

Query: 33  ILILEASDRIGGRVRNEK-FGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYT 91
           + +LEA DRIGGRV ++K F GV V  G      V G  +NPV  +  + G+        
Sbjct: 414 VTVLEAKDRIGGRVWDDKSFKGVVVGRGP---QIVNGCINNPVALMCEQLGISM---RKL 467

Query: 92  NARYNIYDRSGKIIPSGV--AADSYKKAVESAIANLKNLEAT------NSNIGEVIKAAT 143
             R ++    G+I    V    D +  A+   ++  +  +           I E+ +A  
Sbjct: 468 GERCDLIQEGGRITDPTVDKRMDFHFNALLDVVSEWRKDKTLLQDVPLGEKIEEIYRAFV 527

Query: 144 ELPSSPKTPLE-LAIDFILHDFEMA---EVEPIST--------YVDFGEREFLVADERGY 191
           +      + LE   + F L + E A    +  +S         +  F     L+    GY
Sbjct: 528 KESGIQFSELEGQVLQFHLSNLEYACGSSLHQVSARSWDHNEFFAQFAGDHTLLTP--GY 585

Query: 192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSAS 251
           + ++ K+AE          LD RLK    V+ + ++ + V V T DG  + A  V+++  
Sbjct: 586 STIIEKLAEG---------LDIRLK--SPVQSIDYTGDEVQVTTTDGMGHSAQKVLVTVP 634

Query: 252 IGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCS-PGKEFFIY---AH 307
           + +LQ   I F PPL + K +AI      +  KI L+FP +FW     G +FF +   + 
Sbjct: 635 LAILQRGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSA 694

Query: 308 ERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFG-PDIP 366
            +RG +  +  M++     ++L+  +T      +    D++ L++ M +L+++F   +IP
Sbjct: 695 SQRGLFAVFYDMDSQ---QSVLMSVITGEAVASLRTMDDKQVLQQCMGILRELFKEQEIP 751

Query: 367 NATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAG-IFFTGEHTSERFNGYVHG 425
             T   V RW    + + +YS        +  + I   + G +FF GE T+  F   V G
Sbjct: 752 EPTKYFVTRWSTEPWIQMAYSFVKTFGSGEAYDIIAEEIQGTVFFAGEATNRHFPQTVTG 811

Query: 426 GYLAGI 431
            YL+G+
Sbjct: 812 AYLSGV 817

Histone demethylase that demethylates 'Lys-4' of histone H3, a specific tag for epigenetic transcriptional activation, thereby acting as a corepressor. Required for de novo DNA methylation of a subset of imprinted genes during oogenesis. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Demethylates both mono- and di-methylated 'Lys-4' of histone H3. Has no effect on tri-methylated 'Lys-4', mono-, di- or tri-methylated 'Lys-9', mono-, di- or tri-methylated 'Lys-27', mono-, di- or tri-methylated 'Lys-36' of histone H3, or on mono-, di- or tri-methylated 'Lys-20' of histone H4.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	496
224059610	493	predicted protein [Populus trichocarpa]	0.985	0.991	0.838	0.0
255553484	493	polyamine oxidase, putative [Ricinus com	0.985	0.991	0.826	0.0
442738923	493	polyamine oxidase [Gossypium hirsutum]	0.993	1.0	0.828	0.0
449436323	495	PREDICTED: polyamine oxidase 1-like [Cuc	0.989	0.991	0.794	0.0
71043507	495	polyamine oxidase [Nicotiana tabacum]	0.987	0.989	0.756	0.0
297736302	503	unnamed protein product [Vitis vinifera]	0.995	0.982	0.774	0.0
359487312	495	PREDICTED: polyamine oxidase 1 [Vitis vi	0.989	0.991	0.78	0.0
356534600	498	PREDICTED: polyamine oxidase 1-like [Gly	0.991	0.987	0.750	0.0
147787474	533	hypothetical protein VITISV_029811 [Viti	0.995	0.926	0.728	0.0
356557186	501	PREDICTED: polyamine oxidase 1-like [Gly	0.997	0.988	0.750	0.0

>gi|224059610|ref|XP_002299932.1| predicted protein [Populus trichocarpa] gi|222847190|gb|EEE84737.1| predicted protein [Populus trichocarpa]

 Score =  858 bits (2216), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/500 (83%), Positives = 453/500 (90%), Gaps = 11/500 (2%)

Query: 1   MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGA 60
           MDS  RS VIIIGAG+SG+SAGK+LAENGIED++ILEASDRIGGR+R + FGGVSVELGA
Sbjct: 1   MDSPPRSSVIIIGAGISGVSAGKVLAENGIEDMVILEASDRIGGRIRKDNFGGVSVELGA 60

Query: 61  GWIAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVES 120
           GWIAGVGGKESNPVWELAS+SGLRTCFSDY+NARYNIYDRSGKI PSGVAADSYKKAV+ 
Sbjct: 61  GWIAGVGGKESNPVWELASQSGLRTCFSDYSNARYNIYDRSGKIYPSGVAADSYKKAVDL 120

Query: 121 AIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGE 180
           AI NLK+LEA  + +GEV     E PSSPKTP+ELAIDFILHDFEMAEVEPIST+VDFGE
Sbjct: 121 AIENLKSLEA--NLVGEV----NEPPSSPKTPIELAIDFILHDFEMAEVEPISTFVDFGE 174

Query: 181 REFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCV 240
           REFLVADERGY HLLYKMAE FL  S+GKILDNRLKLNKVVRELQHSRNGV VKTEDGC+
Sbjct: 175 REFLVADERGYEHLLYKMAENFLLISEGKILDNRLKLNKVVRELQHSRNGVVVKTEDGCI 234

Query: 241 YEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGK 300
           YEANYVILS SIGVLQSDLISF+PPLP+WKTEAIEKCDVMVYTKIFL FP KFWPC PGK
Sbjct: 235 YEANYVILSVSIGVLQSDLISFRPPLPRWKTEAIEKCDVMVYTKIFLNFPYKFWPCGPGK 294

Query: 301 EFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDM 360
           EFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQ D+ETL+EAM VL+DM
Sbjct: 295 EFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQSDKETLEEAMGVLRDM 354

Query: 361 FGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFN 420
           FGP IPNATDILVPRWWNNRFQRGSYSNYPIISDNQ V+ I+APV  IFFTGEHTSERF+
Sbjct: 355 FGPHIPNATDILVPRWWNNRFQRGSYSNYPIISDNQDVHDIKAPVGRIFFTGEHTSERFS 414

Query: 421 GYVHGGYLAGIDTGKAVVEKIRKDNERNNSETQNFLLEPLLA----LTLTQTEAMSSLHK 476
           GYVHGGYLAGIDT  ++VE++RK+ ER  SE+Q FLLEPLLA    LTLTQTEA+ SLHK
Sbjct: 415 GYVHGGYLAGIDTSNSLVEEMRKEKER-KSESQTFLLEPLLALTGSLTLTQTEAVPSLHK 473

Query: 477 CDIPKQLYLSGKLGIPEAIL 496
           CDIP  LYLSGK+G+ EAIL
Sbjct: 474 CDIPTHLYLSGKVGLQEAIL 493

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553484|ref|XP_002517783.1| polyamine oxidase, putative [Ricinus communis] gi|223543055|gb|EEF44590.1| polyamine oxidase, putative [Ricinus communis]

 Score =  853 bits (2205), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/500 (82%), Positives = 454/500 (90%), Gaps = 11/500 (2%)

Query: 1   MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGA 60
           MDS   S VI+IGAG+SG+SA K+LAENGIED++ILEASDRIGGR++ E FGGVSVELGA
Sbjct: 1   MDSPPLSSVIVIGAGISGLSAAKVLAENGIEDVVILEASDRIGGRIKKESFGGVSVELGA 60

Query: 61  GWIAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVES 120
           GWIAGVGGKESNPVWELA++SGLRTCFSDY+NARYNIYDRSGKI PSGVAADSYKKAV+S
Sbjct: 61  GWIAGVGGKESNPVWELANQSGLRTCFSDYSNARYNIYDRSGKIFPSGVAADSYKKAVDS 120

Query: 121 AIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGE 180
           AI  L++ EA  + +GEVI    E P SPKTP+ELAIDFILHDFEMAEVEPISTYVDFGE
Sbjct: 121 AIMKLRSQEA--NLVGEVI----EPPCSPKTPIELAIDFILHDFEMAEVEPISTYVDFGE 174

Query: 181 REFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCV 240
           REFLVADERGY +LLYK+AE+FL TS+GKILD RLKLNKVVRE+QHSRNGVTVKTEDGC+
Sbjct: 175 REFLVADERGYEYLLYKIAEDFLFTSEGKILDTRLKLNKVVREIQHSRNGVTVKTEDGCI 234

Query: 241 YEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGK 300
           YEANYVILSASIGVLQSDLISF+PPLP WKTEAIEKCDVMVYTKIF+KFP KFWPC P K
Sbjct: 235 YEANYVILSASIGVLQSDLISFRPPLPSWKTEAIEKCDVMVYTKIFIKFPYKFWPCCPEK 294

Query: 301 EFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDM 360
           EFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQ DEETL+EAMEVL+DM
Sbjct: 295 EFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQSDEETLEEAMEVLRDM 354

Query: 361 FGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFN 420
           FGP+IPNATDILVPRWWNNRFQRGSYSNYPIIS+NQ+++ IRAPV  I FTGEHTSERFN
Sbjct: 355 FGPNIPNATDILVPRWWNNRFQRGSYSNYPIISNNQVLHDIRAPVGRILFTGEHTSERFN 414

Query: 421 GYVHGGYLAGIDTGKAVVEKIRKDNERNNSETQNFLLEPLLA----LTLTQTEAMSSLHK 476
           GYVHGGYL+GIDT K ++E++ ++ ER N E Q FLLEPLLA    LTLTQTEA+S+LHK
Sbjct: 415 GYVHGGYLSGIDTSKTLLEEMIQEKERKN-ENQTFLLEPLLALTESLTLTQTEAVSTLHK 473

Query: 477 CDIPKQLYLSGKLGIPEAIL 496
           CDIP QLYLSGKL IPEAIL
Sbjct: 474 CDIPTQLYLSGKLSIPEAIL 493

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|442738923|gb|AGC67035.1| polyamine oxidase [Gossypium hirsutum]

 Score =  835 bits (2157), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/496 (82%), Positives = 448/496 (90%), Gaps = 3/496 (0%)

Query: 1   MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGA 60
           M+ + RS VIIIGAGVSG+SA K+LAENGI D+LILEASDRIGGR+R EKFG VSVELGA
Sbjct: 1   MEPSPRSSVIIIGAGVSGLSAAKVLAENGIGDLLILEASDRIGGRIRKEKFGDVSVELGA 60

Query: 61  GWIAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVES 120
           GWIAGVGGKESNPVWE+A+K GLRTCFSDY+NARYNIYDRSGKI PSG+AADSYKKAV S
Sbjct: 61  GWIAGVGGKESNPVWEIAAKLGLRTCFSDYSNARYNIYDRSGKIFPSGIAADSYKKAVGS 120

Query: 121 AIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGE 180
           AI  LK LE   SN  E     T+   +PKTP+ELAIDFILHD EMAEVEPISTYVDFGE
Sbjct: 121 AIQKLKGLE---SNCVEDATNRTDFTLTPKTPIELAIDFILHDLEMAEVEPISTYVDFGE 177

Query: 181 REFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCV 240
           REFLVADERGY +LLYKMAEEFL TS+GKILDNRLKLNKVVRELQHSRNGVTV+TEDGCV
Sbjct: 178 REFLVADERGYEYLLYKMAEEFLFTSEGKILDNRLKLNKVVRELQHSRNGVTVRTEDGCV 237

Query: 241 YEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGK 300
           YEA+YVILSASI VLQSDLISF+PPLP+WKTEAIEKCDVMVYTKIFLKFP KFWPC PGK
Sbjct: 238 YEADYVILSASISVLQSDLISFRPPLPRWKTEAIEKCDVMVYTKIFLKFPYKFWPCGPGK 297

Query: 301 EFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDM 360
           EFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTN ESKRVE+Q DEETLKEAM VL+DM
Sbjct: 298 EFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNDESKRVESQSDEETLKEAMVVLRDM 357

Query: 361 FGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFN 420
           FG DIP+ATDILVPRWWNNRFQR SYSNYP+IS+NQ++N I+APV  IFFTGEHTSERFN
Sbjct: 358 FGSDIPDATDILVPRWWNNRFQRCSYSNYPMISNNQVINDIKAPVGRIFFTGEHTSERFN 417

Query: 421 GYVHGGYLAGIDTGKAVVEKIRKDNERNNSETQNFLLEPLLALTLTQTEAMSSLHKCDIP 480
           GYVHGG+LAGIDT KAV+E++RKD  +N+ + QNFLLEPLLALTLTQ +A+S LHKCD+P
Sbjct: 418 GYVHGGHLAGIDTSKAVLEEMRKDERQNDKQNQNFLLEPLLALTLTQADAVSGLHKCDVP 477

Query: 481 KQLYLSGKLGIPEAIL 496
            QLYLSGKLGIPEAIL
Sbjct: 478 TQLYLSGKLGIPEAIL 493

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436323|ref|XP_004135942.1| PREDICTED: polyamine oxidase 1-like [Cucumis sativus] gi|449488827|ref|XP_004158184.1| PREDICTED: polyamine oxidase 1-like [Cucumis sativus]

 Score =  823 bits (2125), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/500 (79%), Positives = 442/500 (88%), Gaps = 9/500 (1%)

Query: 1   MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGA 60
           MDS SRS VI+IGAGVSG+SA K+L +NG++D +ILEASDRIGGRV  E FGGVSVELGA
Sbjct: 1   MDSPSRSSVIVIGAGVSGLSAAKVLVDNGVDDFVILEASDRIGGRVCKENFGGVSVELGA 60

Query: 61  GWIAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVES 120
           GWI GVGGKE NPVWELA KS LRTCFSDY+NARYNIYDRSGKI PSGVAADSYKKAV+S
Sbjct: 61  GWIVGVGGKEPNPVWELALKSSLRTCFSDYSNARYNIYDRSGKIFPSGVAADSYKKAVDS 120

Query: 121 AIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGE 180
           AI  L+N      ++  V    +E   +PKTP+ELAIDFILHDFEM EVEPISTY+DFGE
Sbjct: 121 AIQKLRNQGEDADDLSIV----SEPLCTPKTPMELAIDFILHDFEMPEVEPISTYLDFGE 176

Query: 181 REFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCV 240
           REFLVADERGY  LLYKMAE+FL TS+GKILD+RLKLNKVVRE+QHSRNGVTV TEDGC+
Sbjct: 177 REFLVADERGYECLLYKMAEDFLFTSEGKILDSRLKLNKVVREIQHSRNGVTVTTEDGCI 236

Query: 241 YEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGK 300
           YEANYV+LS SIGVLQSDLISF PPLP+WKTEAIEKCDVMVYTKIFLKFP KFWPC PGK
Sbjct: 237 YEANYVVLSVSIGVLQSDLISFTPPLPRWKTEAIEKCDVMVYTKIFLKFPYKFWPCGPGK 296

Query: 301 EFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDM 360
           EFFIYAHERRGYYTFWQ+MENAYPGSNILVVT+TNGESKRVEAQ DEET+KE+MEVL+DM
Sbjct: 297 EFFIYAHERRGYYTFWQNMENAYPGSNILVVTVTNGESKRVEAQSDEETMKESMEVLRDM 356

Query: 361 FGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFN 420
           FGPDIP+ATDILVPRWW+NRFQRGSYSNYPIISD Q+V +I+ P+  I+FTGEHTSERFN
Sbjct: 357 FGPDIPDATDILVPRWWSNRFQRGSYSNYPIISDCQVVQNIKEPIGRIYFTGEHTSERFN 416

Query: 421 GYVHGGYLAGIDTGKAVVEKIRKDNERNNSETQNFLLEPLLALT----LTQTEAMSSLHK 476
           GYVHGGYLAGIDT  A++E++RKD ER  S+ Q+FLLEPLLALT    L+QTEA+S LHK
Sbjct: 417 GYVHGGYLAGIDTSNALLEEMRKDKER-KSDGQSFLLEPLLALTGSLSLSQTEAVSGLHK 475

Query: 477 CDIPKQLYLSGKLGIPEAIL 496
           CD+P QLYL+GKLGI EAIL
Sbjct: 476 CDLPTQLYLNGKLGIQEAIL 495

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|71043507|dbj|BAE16174.1| polyamine oxidase [Nicotiana tabacum]

 Score =  796 bits (2057), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/501 (75%), Positives = 438/501 (87%), Gaps = 11/501 (2%)

Query: 1   MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGA 60
           M +  R  V+I+GAG+SG++A K+L+ENG++D++ILEASD+IGGR+R E+FGGV+VELGA
Sbjct: 1   MATPRRCSVVIVGAGISGLTAAKVLSENGVDDVMILEASDKIGGRIRKEEFGGVTVELGA 60

Query: 61  GWIAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVES 120
           GWIAGVGGK+SNPVWELA +S LRTCFSDY+NARYNIYD SGKI PSG+AADSYKKAV+S
Sbjct: 61  GWIAGVGGKQSNPVWELALQSNLRTCFSDYSNARYNIYDPSGKIFPSGIAADSYKKAVDS 120

Query: 121 AIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGE 180
           AI  L++ E  N++     ++  E  S+PKTP+ELAIDFILHDFEMAEVEPISTYVDFGE
Sbjct: 121 AIQKLRSQEGNNNH-----ESFAETTSTPKTPIELAIDFILHDFEMAEVEPISTYVDFGE 175

Query: 181 REFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCV 240
           REFLVADERGY HLLYKMAE FL TS+GKI D+RL+LN VVRE+QHSRNGV V TEDG +
Sbjct: 176 REFLVADERGYEHLLYKMAENFLFTSEGKITDSRLELNTVVREVQHSRNGVLVSTEDGSL 235

Query: 241 YEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGK 300
           YEANYVILS SIGVLQSDLISF PPLP+WK EAI   DVMVYTKIFLKFP KFWPC P K
Sbjct: 236 YEANYVILSVSIGVLQSDLISFTPPLPRWKMEAIRNLDVMVYTKIFLKFPYKFWPCEPEK 295

Query: 301 EFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDM 360
           EFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVE+Q D+ETL+EAM+VL++M
Sbjct: 296 EFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVESQSDQETLREAMQVLRNM 355

Query: 361 FGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFN 420
           FGPDIP+ATDILVPRWWNNRFQRGSYSNYPI  ++QLV+ I+ PV  IFFTGEHTSE+F+
Sbjct: 356 FGPDIPDATDILVPRWWNNRFQRGSYSNYPIYVNHQLVHDIKEPVGRIFFTGEHTSEKFS 415

Query: 421 GYVHGGYLAGIDTGKAVVEKIRKDNERNNSETQNFLLEPLLA----LTLTQTEAMSSLHK 476
           GYVHGGYL+GIDT  A++E++RKD+ R N E+Q FLLEPLLA    LTLTQ E +SSLHK
Sbjct: 416 GYVHGGYLSGIDTTNALLEEMRKDDGRKN-ESQAFLLEPLLALTGSLTLTQAETVSSLHK 474

Query: 477 CDIPKQLYLS-GKLGIPEAIL 496
           CDIP+QL+LS  KLG+PEAIL
Sbjct: 475 CDIPRQLFLSNSKLGLPEAIL 495

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736302|emb|CBI24940.3| unnamed protein product [Vitis vinifera]

 Score =  795 bits (2052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/505 (77%), Positives = 451/505 (89%), Gaps = 11/505 (2%)

Query: 1   MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGA 60
           MDS +R  VI++GAGVSGISA K+LAE G+ED++ILEASDRIGGRVR E FGGVSVELGA
Sbjct: 1   MDSITRCSVIVVGAGVSGISAAKVLAEKGVEDLVILEASDRIGGRVRKEDFGGVSVELGA 60

Query: 61  GWIAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVES 120
           GW+AGVGGKESNPVWELA KSGLRTCFSDY+NARYNIYDRSGK+ PSGVAADSYKKAVES
Sbjct: 61  GWVAGVGGKESNPVWELARKSGLRTCFSDYSNARYNIYDRSGKLFPSGVAADSYKKAVES 120

Query: 121 AIANLKNLEATN-----SNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAEVEPISTY 175
           AI  +++ EA +         ++ K + +LP  PKTP+ELAIDFILHDFEMAEVEPIST+
Sbjct: 121 AIQMIRHQEANHHGGGGIGGADLSKLSEQLPD-PKTPIELAIDFILHDFEMAEVEPISTF 179

Query: 176 VDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKT 235
           ++FGERE+LVADERGY ++LYKMAE FL +S+GKILD+RLKLNKVVRELQHSRNG+ VKT
Sbjct: 180 LEFGEREYLVADERGYEYILYKMAETFLFSSEGKILDSRLKLNKVVRELQHSRNGIMVKT 239

Query: 236 EDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWP 295
           EDGCVYEA+YVILS SIGVLQSDLI+F+PPLP+WKTEAIEKCDVMVYTKIFLKFP KFWP
Sbjct: 240 EDGCVYEADYVILSVSIGVLQSDLITFRPPLPRWKTEAIEKCDVMVYTKIFLKFPYKFWP 299

Query: 296 CSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAME 355
           C PGKEFFIYAHERRGY+TFWQHMENAYPGSNILVVTLTNGESKRVEAQ DEETLKEAM 
Sbjct: 300 CGPGKEFFIYAHERRGYFTFWQHMENAYPGSNILVVTLTNGESKRVEAQSDEETLKEAMG 359

Query: 356 VLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHT 415
           VL+DMFGPDIPNATDILVP WWNNRFQRGSYSNYPIIS+ Q+VN+I+AP+  IFF+GEHT
Sbjct: 360 VLRDMFGPDIPNATDILVPCWWNNRFQRGSYSNYPIISNPQVVNNIKAPLGRIFFSGEHT 419

Query: 416 SERFNGYVHGGYLAGIDTGKAVVEKIRKDNERNNSETQNFLLEPLLA----LTLTQTEAM 471
           SE+F+GYVHGGYLAGIDT  +++E++RK+ ER  +E Q F+LEPLLA    LTL+QT+A+
Sbjct: 420 SEKFSGYVHGGYLAGIDTADSLLEEMRKEAER-KAENQTFMLEPLLALTGSLTLSQTDAV 478

Query: 472 SSLHKCDIPKQLYLSGKLGIPEAIL 496
           S+L+  DIP+QL+L+ KLG+PEAIL
Sbjct: 479 SALNTFDIPRQLFLTSKLGMPEAIL 503

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487312|ref|XP_002276219.2| PREDICTED: polyamine oxidase 1 [Vitis vinifera]

 Score =  792 bits (2045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/500 (78%), Positives = 448/500 (89%), Gaps = 9/500 (1%)

Query: 1   MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGA 60
           MDS +R  VI++GAGVSGISA K+LAE G+ED++ILEASDRIGGRVR E FGGVSVELGA
Sbjct: 1   MDSITRCSVIVVGAGVSGISAAKVLAEKGVEDLVILEASDRIGGRVRKEDFGGVSVELGA 60

Query: 61  GWIAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVES 120
           GW+AGVGGKESNPVWELA KSGLRTCFSDY+NARYNIYDRSGK+ PSGVAADSYKKAVES
Sbjct: 61  GWVAGVGGKESNPVWELARKSGLRTCFSDYSNARYNIYDRSGKLFPSGVAADSYKKAVES 120

Query: 121 AIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGE 180
           AI  +++ EA +   G +  A  +    PKTP+ELAIDFILHDFEMAEVEPIST+++FGE
Sbjct: 121 AIQMIRHQEANHHGGGGIGGADFD----PKTPIELAIDFILHDFEMAEVEPISTFLEFGE 176

Query: 181 REFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCV 240
           RE+LVADERGY ++LYKMAE FL +S+GKILD+RLKLNKVVRELQHSRNG+ VKTEDGCV
Sbjct: 177 REYLVADERGYEYILYKMAETFLFSSEGKILDSRLKLNKVVRELQHSRNGIMVKTEDGCV 236

Query: 241 YEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGK 300
           YEA+YVILS SIGVLQSDLI+F+PPLP+WKTEAIEKCDVMVYTKIFLKFP KFWPC PGK
Sbjct: 237 YEADYVILSVSIGVLQSDLITFRPPLPRWKTEAIEKCDVMVYTKIFLKFPYKFWPCGPGK 296

Query: 301 EFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDM 360
           EFFIYAHERRGY+TFWQHMENAYPGSNILVVTLTNGESKRVEAQ DEETLKEAM VL+DM
Sbjct: 297 EFFIYAHERRGYFTFWQHMENAYPGSNILVVTLTNGESKRVEAQSDEETLKEAMGVLRDM 356

Query: 361 FGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFN 420
           FGPDIPNATDILVP WWNNRFQRGSYSNYPIIS+ Q+VN+I+AP+  IFF+GEHTSE+F+
Sbjct: 357 FGPDIPNATDILVPCWWNNRFQRGSYSNYPIISNPQVVNNIKAPLGRIFFSGEHTSEKFS 416

Query: 421 GYVHGGYLAGIDTGKAVVEKIRKDNERNNSETQNFLLEPLLA----LTLTQTEAMSSLHK 476
           GYVHGGYLAGIDT  +++E++RK+ ER  +E Q F+LEPLLA    LTL+QT+A+S+L+ 
Sbjct: 417 GYVHGGYLAGIDTADSLLEEMRKEAER-KAENQTFMLEPLLALTGSLTLSQTDAVSALNT 475

Query: 477 CDIPKQLYLSGKLGIPEAIL 496
            DIP+QL+L+ KLG+PEAIL
Sbjct: 476 FDIPRQLFLTSKLGMPEAIL 495

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534600|ref|XP_003535841.1| PREDICTED: polyamine oxidase 1-like [Glycine max]

 Score =  788 bits (2034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/502 (75%), Positives = 437/502 (87%), Gaps = 10/502 (1%)

Query: 1   MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGA 60
           MDS SRS VII+GAG+SGI+A K+LAENG+ED++ILEASDR+GGR+  E FGGV+VELGA
Sbjct: 1   MDSPSRSSVIIVGAGISGIAAAKVLAENGVEDLVILEASDRVGGRICKESFGGVTVELGA 60

Query: 61  GWIAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVES 120
           GWIAGVGG++ NP+WELA++  LRTCFSDY+NARYNIYDRSG IIPS +AADSYKKAV+S
Sbjct: 61  GWIAGVGGQQPNPIWELAAQFELRTCFSDYSNARYNIYDRSGNIIPSEIAADSYKKAVDS 120

Query: 121 AIANLKNLEATNSNIGE------VIKAATELPSSPKTPLELAIDFILHDFEMAEVEPIST 174
           AI  L+N E      G+      +  + T+LPS+P+TP+ELAIDFILHDFEMAEVEPIST
Sbjct: 121 AIQKLRNQEEEEEAYGDDHCNNNIKNSETKLPSTPETPIELAIDFILHDFEMAEVEPIST 180

Query: 175 YVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVK 234
           YVDFGEREFLVADERGY +LLYKMAEEFL TS+G+ILDNRLKLNKVVRELQ+S++GVTVK
Sbjct: 181 YVDFGEREFLVADERGYDYLLYKMAEEFLFTSEGRILDNRLKLNKVVRELQYSKSGVTVK 240

Query: 235 TEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFW 294
           TEDG VYEANYVILS SIGVLQSDL++F P LP+WK +AIEKCDVMVYTKIFLKFP KFW
Sbjct: 241 TEDGFVYEANYVILSVSIGVLQSDLLAFNPTLPRWKLDAIEKCDVMVYTKIFLKFPYKFW 300

Query: 295 PCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAM 354
           P  P KEFFIYAHERRGYYTFWQHMENAYPGSN+LVVTLTN ESKRVEAQ DEETL+EAM
Sbjct: 301 PSGPDKEFFIYAHERRGYYTFWQHMENAYPGSNMLVVTLTNEESKRVEAQADEETLREAM 360

Query: 355 EVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEH 414
            VL+DMFGP+IPNA DILVPRWWNNRFQRGSYSNYPIIS+++L ++I+APV  IFFTGEH
Sbjct: 361 AVLRDMFGPNIPNAIDILVPRWWNNRFQRGSYSNYPIISNHKLFHNIKAPVGRIFFTGEH 420

Query: 415 TSERFNGYVHGGYLAGIDTGKAVVEKIRKDNERNNSETQNFLLEPLLALTLTQTEAMSSL 474
           TSERFNGYVHGGYLAGIDT KA++E++RK+ E      +      L +LT+++ E +S++
Sbjct: 421 TSERFNGYVHGGYLAGIDTSKALLEEMRKEKESQTLLLEPL----LASLTMSKPETVSNI 476

Query: 475 HKCDIPKQLYLSGKLGIPEAIL 496
           HKCDIP QLYLSGKLG+PEAIL
Sbjct: 477 HKCDIPTQLYLSGKLGVPEAIL 498

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147787474|emb|CAN62331.1| hypothetical protein VITISV_029811 [Vitis vinifera]

 Score =  776 bits (2004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/535 (72%), Positives = 450/535 (84%), Gaps = 41/535 (7%)

Query: 1   MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGA 60
           MDS +R  VI++GAGVSGISA K+LAE G+ED++ILEASDRIGGRVR E FGGVSVELGA
Sbjct: 1   MDSITRCSVIVVGAGVSGISAAKVLAEKGVEDLVILEASDRIGGRVRKEDFGGVSVELGA 60

Query: 61  GWIAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVES 120
           GW+AGVGGKESNPVWELA KSGLRTCFSDY+NARYNIYDRSGK+ PSGVAADSYKKAVES
Sbjct: 61  GWVAGVGGKESNPVWELARKSGLRTCFSDYSNARYNIYDRSGKLFPSGVAADSYKKAVES 120

Query: 121 AIANLKNLEATN-----SNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAEVEPISTY 175
           AI  +++ EA +         ++ K + +LP  PKTP+ELAIDFILHDFEMAEVEPIST+
Sbjct: 121 AIQMIRHQEANHHGGGGIGGADLSKLSEQLPD-PKTPIELAIDFILHDFEMAEVEPISTF 179

Query: 176 VDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKT 235
           ++FGE E+LVADERGY ++LYKMAE FL +S+GKILD+RLKLNKVVRELQHSRNG+ VKT
Sbjct: 180 LEFGEXEYLVADERGYEYILYKMAETFLFSSEGKILDSRLKLNKVVRELQHSRNGIMVKT 239

Query: 236 EDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWP 295
           EDGCVYEA+YVILS SIGVLQSDLI+F+PPLP+WKTEAIEKCDVMVYTKIFLKFP KFWP
Sbjct: 240 EDGCVYEADYVILSVSIGVLQSDLITFRPPLPRWKTEAIEKCDVMVYTKIFLKFPYKFWP 299

Query: 296 CSPGKEFFIYAHERRGYYTFWQ------------------------------HMENAYPG 325
           C PGKEFFIYAHERRGY+TFWQ                              HMENAYPG
Sbjct: 300 CGPGKEFFIYAHERRGYFTFWQIKYSDVSAECKWATYALICKYDYWGHTFSIHMENAYPG 359

Query: 326 SNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGS 385
           SNILVVTLTNGESKRVEAQ DEETLKEAM VL+DMFGPDIPNATDILVP WWNNRFQRGS
Sbjct: 360 SNILVVTLTNGESKRVEAQSDEETLKEAMGVLRDMFGPDIPNATDILVPXWWNNRFQRGS 419

Query: 386 YSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDN 445
           YSNYPIIS+ Q+VN+I+AP+  IFF+GEHTSE+F+GYVHGGYLAGIDT  +++E++RK+ 
Sbjct: 420 YSNYPIISNPQVVNNIKAPLGRIFFSGEHTSEKFSGYVHGGYLAGIDTADSLLEEMRKEA 479

Query: 446 ERNNSETQNFLLEPLLA----LTLTQTEAMSSLHKCDIPKQLYLSGKLGIPEAIL 496
           ER  +E Q F+LEPLLA    LTL+QT+A+S+L+  DIP+QL+L+ KLG+PEAIL
Sbjct: 480 ER-KAENQTFMLEPLLALTGSLTLSQTDAVSALNTFDIPRQLFLTSKLGMPEAIL 533

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557186|ref|XP_003546899.1| PREDICTED: polyamine oxidase 1-like [Glycine max]

 Score =  775 bits (2002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/502 (75%), Positives = 431/502 (85%), Gaps = 7/502 (1%)

Query: 1   MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGA 60
           MDS SR  VII+GAG+SGI+A K+LAENGIED++ILEASDR+GGR+R E FGGVSVELGA
Sbjct: 1   MDSPSRPSVIIVGAGISGIAAAKVLAENGIEDLVILEASDRVGGRIRKESFGGVSVELGA 60

Query: 61  GWIAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVES 120
           GWIAGVGG + NPVWEL  + GLRTCFSDY+NARYNIYDRSG IIPSG+AADSYKKAV+S
Sbjct: 61  GWIAGVGGPQPNPVWELGVQFGLRTCFSDYSNARYNIYDRSGNIIPSGIAADSYKKAVDS 120

Query: 121 AIANLKNLEAT------NSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAEVEPIST 174
           AI  L+ LE        + +   +    T+ PS+P+TP+ELAIDFILHDFEMAEVEPIST
Sbjct: 121 AIEKLRKLEEEEATAYGDDHSNNIKNNETKPPSTPETPIELAIDFILHDFEMAEVEPIST 180

Query: 175 YVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVK 234
           YVDFGERE+ VADERGY +LLYKMAEEFL TS G+ILDNRLKLNKVVRELQ+S++GVTVK
Sbjct: 181 YVDFGEREYFVADERGYDYLLYKMAEEFLFTSKGRILDNRLKLNKVVRELQYSKSGVTVK 240

Query: 235 TEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFW 294
           TEDGCVYE NYVILS SIGVLQSDL++F PPLP WK +AI+KCDVMVYTKIFLKFP KFW
Sbjct: 241 TEDGCVYETNYVILSVSIGVLQSDLLAFNPPLPGWKVQAIDKCDVMVYTKIFLKFPYKFW 300

Query: 295 PCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAM 354
           P  P KEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQ DEETL+EAM
Sbjct: 301 PSGPEKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQLDEETLREAM 360

Query: 355 EVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEH 414
             L+DMFG +IP+A DILVPRWWNNRFQRGSYSNYPIIS++++ + I+APV  IFFTGEH
Sbjct: 361 AALRDMFGSNIPDAIDILVPRWWNNRFQRGSYSNYPIISNHKVFHDIKAPVGRIFFTGEH 420

Query: 415 TSERFNGYVHGGYLAGIDTGKAVVEKIRKDNERNNSETQNFLLEPLLALTLTQTEAMSSL 474
           TSERFNGYVHGGYLAGIDT KA++E++RK+ E + +     LL     LT+++ E +S++
Sbjct: 421 TSERFNGYVHGGYLAGIDTSKALLEEMRKEKE-SQTLLLEPLLALTGPLTMSKPETVSNI 479

Query: 475 HKCDIPKQLYLSGKLGIPEAIL 496
           HKCDIP QLYLSGKLGIPEAIL
Sbjct: 480 HKCDIPTQLYLSGKLGIPEAIL 501

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	496
TAIR|locus:2173219	472	PAO1 "polyamine oxidase 1" [Ar	0.838	0.881	0.798	2.2e-183
ASPGD|ASPL0000004769	536	AN6658 [Emericella nidulans (t	0.735	0.680	0.347	2.8e-50
TAIR|locus:2053723	490	PAO2 "AT2G43020" [Arabidopsis	0.762	0.771	0.302	9.5e-34
TAIR|locus:2077670	488	PAO3 "polyamine oxidase 3" [Ar	0.760	0.772	0.294	1.5e-33
TAIR|locus:2018571	497	PAO4 "polyamine oxidase 4" [Ar	0.786	0.784	0.282	3.7e-32
UNIPROTKB|E1BRG3	617	KDM1B "Uncharacterized protein	0.784	0.630	0.262	1.5e-24
UNIPROTKB|F1NRA3	537	KDM1B "Uncharacterized protein	0.786	0.726	0.262	1.6e-24
UNIPROTKB|H0Y6H0	640	KDM1B "Lysine-specific histone	0.780	0.604	0.276	7.4e-23
UNIPROTKB|J3KPL2	823	KDM1B "Lysine-specific histone	0.780	0.470	0.276	1.3e-22
UNIPROTKB|Q8NB78	822	KDM1B "Lysine-specific histone	0.778	0.469	0.276	2.2e-22

TAIR|locus:2173219 PAO1 "polyamine oxidase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1779 (631.3 bits), Expect = 2.2e-183, P = 2.2e-183
 Identities = 336/421 (79%), Positives = 378/421 (89%)

Query:    23 KILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSG 82
             K+L ENG+ED+LILEA+DRIGGR+  + FG V VELGAGWIAGVGGKESNPVWELAS+  
Sbjct:    20 KVLVENGVEDVLILEATDRIGGRIHKQNFGDVPVELGAGWIAGVGGKESNPVWELASRFN 79

Query:    83 LRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAA 142
             LRTCFSDYTNAR+NIYDRSGKI P+G+A+DSYKKAV+SAI  LK+LEA  S  G+V   A
Sbjct:    80 LRTCFSDYTNARFNIYDRSGKIFPTGIASDSYKKAVDSAILKLKSLEAQCS--GQV---A 134

Query:   143 TELPSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEF 202
              E PSSPKTP+ELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGY  LLYKMAEEF
Sbjct:   135 EEAPSSPKTPIELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYECLLYKMAEEF 194

Query:   203 LSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISF 262
             L TS G ILD RLKLN+VVRE+Q SRNGV VKTEDG VYEANYVI+SASIGVLQSDL+SF
Sbjct:   195 LVTSHGNILDYRLKLNQVVREVQQSRNGVVVKTEDGSVYEANYVIVSASIGVLQSDLLSF 254

Query:   263 KPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENA 322
             +P LP+WKTEAI+KCDVMVYTKIFLKFP  FWPC PG+EFFIYAHE+RGY+TFWQHMENA
Sbjct:   255 QPLLPRWKTEAIQKCDVMVYTKIFLKFPQCFWPCGPGQEFFIYAHEQRGYFTFWQHMENA 314

Query:   323 YPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQ 382
             YPGSNILVVTLTN +SKRVEAQ D+ET+KEAM VL+DMFG  IP ATDILVPRWWNNRFQ
Sbjct:   315 YPGSNILVVTLTNEQSKRVEAQSDQETMKEAMSVLRDMFGATIPYATDILVPRWWNNRFQ 374

Query:   383 RGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIR 442
             RGSYSNYP+ISDNQL+ +I+APV  IFFTGEHTSE+F+GYVHGGYLAGIDT K+++E+++
Sbjct:   375 RGSYSNYPMISDNQLLQNIKAPVGRIFFTGEHTSEKFSGYVHGGYLAGIDTSKSLLEEMK 434

Query:   443 K 443
             +
Sbjct:   435 Q 435

GO:0005739 "mitochondrion" evidence=ISM

GO:0046592 "polyamine oxidase activity" evidence=IDA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

ASPGD|ASPL0000004769 AN6658 [Emericella nidulans (taxid:162425)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 142/409 (34%), Positives = 216/409 (52%)

Query:    56 VELGAGW--------IAGVGGKES-NPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIP 106
             +E GA W        I G+G + + NPVW LA K GL+  +SDY +     Y+ +G    
Sbjct:    89 IEYGANWNRRADREQIQGLGSENAANPVWTLAKKYGLKNTYSDYGSIL--TYNETGYTDY 146

Query:   107 SGVAADSYKKAVESAIANLKNLEATNSNIGEVI-KAATELPS-SPKTP--LELAIDFILH 162
             S +  D Y  A E A     ++   N NI ++  ++   L    P+       A+++   
Sbjct:   147 SHLL-DEYSAASERASERAGSI--LNDNIQDMTARSGLALAGWRPRRDDMAAQAVEWWNW 203

Query:   163 DFEMAEVEPISTYV-----------DFGEREFLVADERGYAHLLYKMAEEFLSTSDGKIL 211
             D+E A     S++V            FG++  LV D RGY+ ++   A  FL  +D    
Sbjct:   204 DWEGAYTPETSSFVFGVASENLTFNQFGDQNNLVLDRRGYSAIIQGEASTFLHHND---- 259

Query:   212 DNRLKLNKVVRELQHSRNGVTVKTEDG-CVYEANYVILSASIGVLQSDLISFKPPLPKWK 270
              +RL+LN  V ++++   GV V+  DG C+  AN  I + S+GVLQ+D ++F P LP WK
Sbjct:   260 -SRLRLNTRVADIEYGPGGVIVRNSDGSCISAAN-AICTFSLGVLQNDAVNFTPSLPDWK 317

Query:   271 TEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHER-RGYYTFWQHM--ENAYPGSN 327
               AI K ++  YTKIF++F   FWP     +FF+YA    RGYY  +Q +  +   PGSN
Sbjct:   318 QTAIAKFNMGTYTKIFMQFNETFWP--DDTQFFLYADPTTRGYYPVFQSLSTDGFLPGSN 375

Query:   328 ILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPD--IPNATDILVPRWWNNRFQRGS 385
             I+ VT+   ++ R E Q DE+T +E +EVLQ MF PD  IP+      PRW    +  GS
Sbjct:   376 IIFVTVVQDQAYRAERQSDEQTKREVLEVLQKMF-PDKHIPDPIAFTYPRWSTEPWAYGS 434

Query:   386 YSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTG 434
             YSN+P  +  ++  ++RA V  ++F GE  S ++ G++HG +  G + G
Sbjct:   435 YSNWPAGTTLEMHQNLRANVDRLWFAGEAMSAQYFGFLHGAWFEGREAG 483

GO:0005575 "cellular_component" evidence=ND

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

TAIR|locus:2053723 PAO2 "AT2G43020" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 127/420 (30%), Positives = 199/420 (47%)

Query:    33 ILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGL---RTC--- 86
             +++LE+ DRIGGRV  +   G  V+LGA W+ GV  KE NP+  +  + GL   RT    
Sbjct:    53 VMVLESRDRIGGRVHTDYSFGFPVDLGASWLHGVC-KE-NPLAPVIGRLGLPLYRTSGDN 110

Query:    87 --FSDYTNARYNIYDRSGKIIPSGVAAD---SYKKAVESAIANLKNLEATNSNIGEVIKA 141
                 D+    Y ++D  G  +P  +      ++++ +E  I  +++ +  + +I +    
Sbjct:   111 SVLYDHDLESYALFDMDGNQVPQELVTQIGVTFERILEE-INKVRDEQDADISISQAFSI 169

Query:   142 ATELPSSPKTPLE-LAIDFI------LHDFEMAEVEPISTYVDFGEREFLVADERGYAHL 194
                    P+  LE LA + +      +  +  A+ E IS    + + E L     G+  L
Sbjct:   170 V--FSRKPELRLEGLAHNVLQWYVCRMEGWFAADAETISAKC-WDQEELLPG---GHG-L 222

Query:   195 LYKMAEEFLSTSDGKILDNRL--KLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASI 252
             + +     ++T   K LD R+  ++ K+VR      NGV V TE+G  + A+  +++  +
Sbjct:   223 MVRGYRPVINTL-AKGLDIRVGHRVTKIVRRY----NGVKVTTENGQTFVADAAVIAVPL 277

Query:   253 GVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGY 312
             GVL+S  I F+P LP+WK EAI    V +  KI L F   FWP     EF     E    
Sbjct:   278 GVLKSGTIKFEPKLPEWKQEAINDLGVGIENKIILHFEKVFWP---KVEFLGVVAETSYG 334

Query:   313 YTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDIL 372
              +++ ++  A  G  +LV       +K +E   DE     A+  LQ +  PD       L
Sbjct:   335 CSYFLNLHKA-TGHPVLVYMPAGQLAKDIEKMSDEAAANFAVLQLQRIL-PDALPPVQYL 392

Query:   373 VPRWWNNRFQRGSYSNYPIISD-NQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGI 431
             V RW ++    GSYS Y I+   + L   +R PV  +FF GE TS  F G VHG Y  G+
Sbjct:   393 VSRWGSDVNSMGSYS-YDIVGKPHDLYERLRVPVDNLFFAGEATSSSFPGSVHGAYSTGL 451

GO:0008131 "primary amine oxidase activity" evidence=ISS

GO:0006598 "polyamine catabolic process" evidence=IDA

GO:0046592 "polyamine oxidase activity" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

TAIR|locus:2077670 PAO3 "polyamine oxidase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 124/421 (29%), Positives = 207/421 (49%)

Query:    33 ILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGL---RTC--- 86
             +++LE+ DRIGGRV  +   G  V+LGA W+ GV  KE NP+  +  + GL   RT    
Sbjct:    54 VVVLESRDRIGGRVHTDYSFGFPVDLGASWLHGVC-KE-NPLAAVIGRLGLPLYRTSGDN 111

Query:    87 --FSDYTNARYNIYDRSGKIIPSGVAA---DSYKKAVESAIANLKNLEATNSNIGEVIKA 141
                 D+    Y ++D++G  +   +     ++++  +E  I  +++ +  + +I +    
Sbjct:   112 SVLYDHDLESYALFDKAGNQVSQELVTKVGENFEHILEE-ICKVRDEQDEDMSIAQAFSI 170

Query:   142 ATELPSSPKTPLE-LA---IDFILHDFE---MAEVEPISTYVDFGEREFLVADERGYAHL 194
               +   +P+  LE LA   + + L   E    A+ E IS    + + E L     G+  L
Sbjct:   171 VFK--RNPELRLEGLAHNVLQWYLCRMEGWFAADAETISAKC-WDQEELLPG---GHG-L 223

Query:   195 LYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV 254
             + +     ++T   K LD  ++L+  + ++    +GV V TE G  + A+  +++  +GV
Sbjct:   224 MVRGYRPVINTLS-KGLD--IRLSHRITKISRRYSGVKVTTEKGDTFVADAAVIALPLGV 280

Query:   255 LQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFF-IYAHERRGYY 313
             L+S +I+F+P LP+WK EAI    V +  KI L F   FWP     EF  + A    G  
Sbjct:   281 LKSGMITFEPKLPQWKQEAINDLGVGIENKIILNFDNVFWP---NVEFLGVVAETSYGCS 337

Query:   314 TFWQ-HMENAYPGSNILVVTLTNGESKR-VEAQPDEETLKEAMEVLQDMFGPDIPNATDI 371
              F   H   ++P    ++V +  G+  R +E + DE     A   LQ +  PD  +  + 
Sbjct:   338 YFLNLHKATSHP----VLVYMPAGQLARDIEKKSDEAAANFAFSQLQKIL-PDASSPINY 392

Query:   372 LVPRWWNNRFQRGSYSNYPIISD-NQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAG 430
             LV RW ++    GSYS Y I++  + L   +R P+  +FF GE TS  + G VHG Y  G
Sbjct:   393 LVSRWGSDINSLGSYS-YDIVNKPHDLYERLRVPLDNLFFAGEATSSSYPGSVHGAYSTG 451

Query:   431 I 431
             +
Sbjct:   452 V 452

GO:0005634 "nucleus" evidence=ISM

GO:0005777 "peroxisome" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA;IDA

GO:0046592 "polyamine oxidase activity" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

TAIR|locus:2018571 PAO4 "polyamine oxidase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 118/417 (28%), Positives = 192/417 (46%)

Query:    33 ILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGL---RTCFSD 89
             + +LE+ DRIGGR+  +   G  V++GA W+ GV   + NP+  +  + GL   RT   D
Sbjct:    54 VTVLESRDRIGGRIHTDYSFGCPVDMGASWLHGVS--DENPLAPIIRRLGLTLYRTSGDD 111

Query:    90 ---YTN--ARYNIYDRSGKIIPSGVAA---DSYKKAVESAIANLKNLEATNSNIGEVIKA 141
                Y +    Y ++D  G  IP  +     D++K+ +E     +++  A + ++ + I  
Sbjct:   112 SILYDHDLESYGLFDMHGNKIPPQLVTKVGDAFKRILEET-EKIRDETANDMSVLQGISI 170

Query:   142 ATELPSSPKTPLELAIDFILHDFEMAEVEP-ISTYVDFGEREFLVADE-RGYAHLLYKMA 199
                L  +P+   E  + + +  + +  +E   +   +    +    DE     H L    
Sbjct:   171 V--LDRNPELRQE-GMAYEVLQWYLCRMEAWFAVDANLISLKCWDQDECLSGGHGLMVQG 227

Query:   200 EEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDL 259
              E +  +  K LD RL  ++V + ++ S N V V  E G  + A+ VI++  IGVL+++L
Sbjct:   228 YEPVIRTIAKDLDIRLN-HRVTKVVRTSNNKVIVAVEGGTNFVADAVIITVPIGVLKANL 286

Query:   260 ISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHM 319
             I F+P LP+WKT AI    V    KI L+F   FWP     EF            ++ ++
Sbjct:   287 IQFEPELPQWKTSAISGLGVGNENKIALRFDRAFWP---NVEFLGMVAPTSYACGYFLNL 343

Query:   320 ENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNN 379
               A  G  +LV       ++ +E   DE T    M  L+ MF PD P+    LV RW  +
Sbjct:   344 HKA-TGHPVLVYMAAGNLAQDLEKLSDEATANFVMLQLKKMF-PDAPDPAQYLVTRWGTD 401

Query:   380 RFQRGSYSNYPIIS-DNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGK 435
                 G Y+ Y ++     L   +  PV  IFF GE  +    G  HG +LAG+   +
Sbjct:   402 PNTLGCYA-YDVVGMPEDLYPRLGEPVDNIFFGGEAVNVEHQGSAHGAFLAGVSASQ 457

GO:0005634 "nucleus" evidence=ISM

GO:0008131 "primary amine oxidase activity" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA;IDA;IMP

GO:0046592 "polyamine oxidase activity" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

UNIPROTKB|E1BRG3 KDM1B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 304 (112.1 bits), Expect = 1.5e-24, P = 1.5e-24
 Identities = 111/423 (26%), Positives = 198/423 (46%)

Query:    29 GIEDILILEASDRIGGRVRNEK-FGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCF 87
             GI+ + +LEA DRIGGRV ++K F GV+V  GA     V G  +NP+  +  + G++   
Sbjct:   200 GIK-VTVLEAKDRIGGRVWDDKTFTGVTVGRGAQI---VNGCVNNPMALMCEQLGIKM-- 253

Query:    88 SDYTNARYNIYDRSGKIIPSGV--AADSYKKAVESAIANLKNLEATNSNI--GEVI---- 139
                   + ++    G+I    +    D +  A+   ++  +  +  + ++  GE I    
Sbjct:   254 -HKLGEKCDLIQEGGRITDPTIDKRMDFHFNAILDVVSEWRKDKTQHQDVPLGEKIQEIY 312

Query:   140 KAATELPSSPKTPLE-LAIDFILHDFEMA---EVEPISTYVDFGEREFLVADERGYAHLL 195
             KA         + LE   + F L + E A    +  +S    +   EF  A   G  H L
Sbjct:   313 KAFIRESGIQFSELEEKVLQFHLSNLEYACGSNLSQVSAR-SWDHNEFF-AQFAG-DHTL 369

Query:   196 YKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVL 255
               +    +     + LD  ++LN  V+ + +S   V V T DG V+    V+++  + +L
Sbjct:   370 LTVGYSTVIDKLAEGLD--IRLNFPVQSIDYSGEEVQVTTADGTVWRTQKVLVTVPLALL 427

Query:   256 QSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCS-PGKEFFIYA---HERRG 311
             Q + I F PPL + K +AI      V  KI L+FP +FW     G +FF +      +RG
Sbjct:   428 QKNAIQFNPPLSEKKIKAINSLGAGVIEKIALQFPYRFWDSKIQGADFFGHVPPNSSQRG 487

Query:   312 YYTFWQHMENAYPGSNILVVTLTNGES-KRVEAQPDEETLKEAMEVLQDMFGP-DIPNAT 369
              ++ +  M+    G   +++++  G++   ++   D++ L++ M VL+++F   ++P+  
Sbjct:   488 LFSVFYDMDPE--GKQSILMSVVTGDAVTTIKNLDDKQVLQQCMTVLRELFKEQEVPDPV 545

Query:   370 DILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAG-IFFTGEHTSERFNGYVHGGYL 428
                V RW  + + + +YS        +  + I   + G IFF GE T+  F   V G YL
Sbjct:   546 KFFVTRWSKDPWLQMAYSFVKTGGSGEAYDIIAEDIQGTIFFAGEATNRHFPQTVTGAYL 605

Query:   429 AGI 431
             +G+
Sbjct:   606 SGV 608

GO:0003677 "DNA binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0034648 "histone demethylase activity (H3-dimethyl-K4 specific)" evidence=IEA

GO:0034649 "histone demethylase activity (H3-monomethyl-K4 specific)" evidence=IEA

GO:0043046 "DNA methylation involved in gamete generation" evidence=IEA

GO:0044030 "regulation of DNA methylation" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

UNIPROTKB|F1NRA3 KDM1B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 302 (111.4 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 111/423 (26%), Positives = 197/423 (46%)

Query:    29 GIEDILILEASDRIGGRVRNEK-FGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCF 87
             GI+ + +LEA DRIGGRV ++K F GV+V  GA     V G  +NP+  +  + G++   
Sbjct:   119 GIK-VTVLEAKDRIGGRVWDDKTFTGVTVGRGAQI---VNGCVNNPMALMCEQLGIKM-- 172

Query:    88 SDYTNARYNIYDRSGKIIPSGV--AADSYKKAVESAIANLKNLEATNSNI--GEVI---- 139
                   + ++    G+I    +    D +  A+   ++  +  +  + ++  GE I    
Sbjct:   173 -HKLGEKCDLIQEGGRITDPTIDKRMDFHFNAILDVVSEWRKDKTQHQDVPLGEKIQEIY 231

Query:   140 KAATELPSSPKTPLE-LAIDFILHDFEMA---EVEPISTYVDFGEREFLVADERGYAHLL 195
             KA         + LE   + F L + E A    +  +S    +   EF  A   G  H L
Sbjct:   232 KAFIRESGIQFSELEEKVLQFHLSNLEYACGSNLSQVSAR-SWDHNEFF-AQFAG-DHTL 288

Query:   196 YKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVL 255
               +    +     + LD RL   +V + + +S   V V T DG V+    V+++  + +L
Sbjct:   289 LTVGYSTVIDKLAEGLDIRLNFPQV-QSIDYSGEEVQVTTADGTVWRTQKVLVTVPLALL 347

Query:   256 QSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCS-PGKEFFIYA---HERRG 311
             Q + I F PPL + K +AI      V  KI L+FP +FW     G +FF +      +RG
Sbjct:   348 QKNAIQFNPPLSEKKIKAINSLGAGVIEKIALQFPYRFWDSKIQGADFFGHVPPNSSQRG 407

Query:   312 YYTFWQHMENAYPGSNILVVTLTNGES-KRVEAQPDEETLKEAMEVLQDMFGP-DIPNAT 369
              ++ +  M+    G   +++++  G++   ++   D++ L++ M VL+++F   ++P+  
Sbjct:   408 LFSVFYDMDPE--GKQSILMSVVTGDAVTTIKNLDDKQVLQQCMTVLRELFKEQEVPDPV 465

Query:   370 DILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAG-IFFTGEHTSERFNGYVHGGYL 428
                V RW  + + + +YS        +  + I   + G IFF GE T+  F   V G YL
Sbjct:   466 KFFVTRWSKDPWLQMAYSFVKTGGSGEAYDIIAEDIQGTIFFAGEATNRHFPQTVTGAYL 525

Query:   429 AGI 431
             +G+
Sbjct:   526 SGV 528

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|H0Y6H0 KDM1B "Lysine-specific histone demethylase 1B" [Homo sapiens (taxid:9606)]

 Score = 290 (107.1 bits), Expect = 7.4e-23, P = 7.4e-23
 Identities = 118/426 (27%), Positives = 197/426 (46%)

Query:    29 GIEDILILEASDRIGGRVRNEK-FGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTC- 86
             GI+ + +LEA DRIGGRV ++K F GV+V  GA     V G  +NPV  +  + G+    
Sbjct:   222 GIK-VTVLEAKDRIGGRVWDDKSFKGVTVGRGAQI---VNGCINNPVALMCEQLGISMHK 277

Query:    87 FSDYTNARYNIYDRSGKIIPSGV--AADSYKKAVESAIANLKN----LEAT--NSNIGEV 138
             F +    R ++    G+I    +    D +  A+   ++  +     L+       I E+
Sbjct:   278 FGE----RCDLIQEGGRITDPTIDKRMDFHFNALLDVVSEWRKDKTQLQDVPLGEKIEEI 333

Query:   139 IKAATELPSSPKTPLE-LAIDFILHDFEMA---EVEPISTYVDFGEREFLVADERGYAHL 194
              KA  +      + LE   + F L + E A    +  +S    +   EF  A   G   L
Sbjct:   334 YKAFIKESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSAR-SWDHNEFF-AQFAGDHTL 391

Query:   195 L---YKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSAS 251
             L   Y +  E L+  +G  LD +LK +  V+ + +S + V V T DG  Y A  V+++  
Sbjct:   392 LTPGYSVIIEKLA--EG--LDIQLK-SPQVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVP 446

Query:   252 IGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCS-PGKEFFIY---AH 307
             + +LQ   I F PPL + K +AI      +  KI L+FP +FW     G +FF +   + 
Sbjct:   447 LALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSA 506

Query:   308 ERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGP-DIP 366
              +RG +  +  M+     S +L+  +       V    D++ L++ M  L+++F   ++P
Sbjct:   507 SKRGLFAVFYDMDPQKKHS-VLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVP 565

Query:   367 NATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAG-IFFTGEHTSERFNGYVHG 425
             + T   V RW  + + + +YS        +  + I   + G +FF GE T+  F   V G
Sbjct:   566 DPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTG 625

Query:   426 GYLAGI 431
              YL+G+
Sbjct:   626 AYLSGV 631

GO:0003677 "DNA binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|J3KPL2 KDM1B "Lysine-specific histone demethylase 1B" [Homo sapiens (taxid:9606)]

 Score = 290 (107.1 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 118/426 (27%), Positives = 197/426 (46%)

Query:    29 GIEDILILEASDRIGGRVRNEK-FGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTC- 86
             GI+ + +LEA DRIGGRV ++K F GV+V  GA     V G  +NPV  +  + G+    
Sbjct:   405 GIK-VTVLEAKDRIGGRVWDDKSFKGVTVGRGAQI---VNGCINNPVALMCEQLGISMHK 460

Query:    87 FSDYTNARYNIYDRSGKIIPSGV--AADSYKKAVESAIANLKN----LEAT--NSNIGEV 138
             F +    R ++    G+I    +    D +  A+   ++  +     L+       I E+
Sbjct:   461 FGE----RCDLIQEGGRITDPTIDKRMDFHFNALLDVVSEWRKDKTQLQDVPLGEKIEEI 516

Query:   139 IKAATELPSSPKTPLE-LAIDFILHDFEMA---EVEPISTYVDFGEREFLVADERGYAHL 194
              KA  +      + LE   + F L + E A    +  +S    +   EF  A   G   L
Sbjct:   517 YKAFIKESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSAR-SWDHNEFF-AQFAGDHTL 574

Query:   195 L---YKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSAS 251
             L   Y +  E L+  +G  LD +LK +  V+ + +S + V V T DG  Y A  V+++  
Sbjct:   575 LTPGYSVIIEKLA--EG--LDIQLK-SPQVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVP 629

Query:   252 IGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCS-PGKEFFIY---AH 307
             + +LQ   I F PPL + K +AI      +  KI L+FP +FW     G +FF +   + 
Sbjct:   630 LALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSA 689

Query:   308 ERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGP-DIP 366
              +RG +  +  M+     S +L+  +       V    D++ L++ M  L+++F   ++P
Sbjct:   690 SKRGLFAVFYDMDPQKKHS-VLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVP 748

Query:   367 NATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAG-IFFTGEHTSERFNGYVHG 425
             + T   V RW  + + + +YS        +  + I   + G +FF GE T+  F   V G
Sbjct:   749 DPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTG 808

Query:   426 GYLAGI 431
              YL+G+
Sbjct:   809 AYLSGV 814

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|Q8NB78 KDM1B "Lysine-specific histone demethylase 1B" [Homo sapiens (taxid:9606)]

 Score = 288 (106.4 bits), Expect = 2.2e-22, P = 2.2e-22
 Identities = 118/426 (27%), Positives = 196/426 (46%)

Query:    29 GIEDILILEASDRIGGRVRNEK-FGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTC- 86
             GI+ + +LEA DRIGGRV ++K F GV+V  GA     V G  +NPV  +  + G+    
Sbjct:   405 GIK-VTVLEAKDRIGGRVWDDKSFKGVTVGRGAQI---VNGCINNPVALMCEQLGISMHK 460

Query:    87 FSDYTNARYNIYDRSGKIIPSGV--AADSYKKAVESAIANLKN----LEAT--NSNIGEV 138
             F +    R ++    G+I    +    D +  A+   ++  +     L+       I E+
Sbjct:   461 FGE----RCDLIQEGGRITDPTIDKRMDFHFNALLDVVSEWRKDKTQLQDVPLGEKIEEI 516

Query:   139 IKAATELPSSPKTPLE-LAIDFILHDFEMA---EVEPISTYVDFGEREFLVADERGYAHL 194
              KA  +      + LE   + F L + E A    +  +S    +   EF  A   G   L
Sbjct:   517 YKAFIKESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSAR-SWDHNEFF-AQFAGDHTL 574

Query:   195 L---YKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSAS 251
             L   Y +  E L+  +G  LD +LK    V+ + +S + V V T DG  Y A  V+++  
Sbjct:   575 LTPGYSVIIEKLA--EG--LDIQLK--SPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVP 628

Query:   252 IGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCS-PGKEFFIY---AH 307
             + +LQ   I F PPL + K +AI      +  KI L+FP +FW     G +FF +   + 
Sbjct:   629 LALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSA 688

Query:   308 ERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGP-DIP 366
              +RG +  +  M+     S +L+  +       V    D++ L++ M  L+++F   ++P
Sbjct:   689 SKRGLFAVFYDMDPQKKHS-VLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVP 747

Query:   367 NATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAG-IFFTGEHTSERFNGYVHG 425
             + T   V RW  + + + +YS        +  + I   + G +FF GE T+  F   V G
Sbjct:   748 DPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTG 807

Query:   426 GYLAGI 431
              YL+G+
Sbjct:   808 AYLSGV 813

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043046 "DNA methylation involved in gamete generation" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=ISS

GO:0034720 "histone H3-K4 demethylation" evidence=ISS

GO:0044030 "regulation of DNA methylation" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0034649 "histone demethylase activity (H3-monomethyl-K4 specific)" evidence=ISS

GO:0034648 "histone demethylase activity (H3-dimethyl-K4 specific)" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FNA2	PAO1_ARATH	1, ., 5, ., 3, ., 1, 6	0.7473	0.9032	0.9491	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.5.3.16	0.979
3rd Layer	1.5.3	0.983

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00028738001 SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (495 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	496
PLN02676	487	PLN02676, PLN02676, polyamine oxidase	0.0
pfam01593	444	pfam01593, Amino_oxidase, Flavin containing amine	4e-61
PLN02268	435	PLN02268, PLN02268, probable polyamine oxidase	3e-51
PLN02328	808	PLN02328, PLN02328, lysine-specific histone demeth	7e-28
PLN02568	539	PLN02568, PLN02568, polyamine oxidase	4e-27
COG1231	450	COG1231, COG1231, Monoamine oxidase [Amino acid tr	5e-25
PLN02529	738	PLN02529, PLN02529, lysine-specific histone demeth	2e-23
PLN03000	881	PLN03000, PLN03000, amine oxidase	3e-18
PLN02976	1713	PLN02976, PLN02976, amine oxidase	2e-15
COG1232	444	COG1232, HemY, Protoporphyrinogen oxidase [Coenzym	3e-14
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	1e-12
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	3e-10
PRK11883	451	PRK11883, PRK11883, protoporphyrinogen oxidase; Re	2e-08
PLN02976	1713	PLN02976, PLN02976, amine oxidase	2e-07
PLN02576	496	PLN02576, PLN02576, protoporphyrinogen oxidase	3e-06
COG2072	443	COG2072, TrkA, Predicted flavoprotein involved in	3e-06
TIGR00562	462	TIGR00562, proto_IX_ox, protoporphyrinogen oxidase	4e-06
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	9e-06
COG3349	485	COG3349, COG3349, Uncharacterized conserved protei	2e-05
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	3e-05
PRK07233	434	PRK07233, PRK07233, hypothetical protein; Provisio	7e-05
COG2907	447	COG2907, COG2907, Predicted NAD/FAD-binding protei	9e-05
PLN03000	881	PLN03000, PLN03000, amine oxidase	1e-04
PRK07208	479	PRK07208, PRK07208, hypothetical protein; Provisio	1e-04
PRK08243	392	PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygen	2e-04
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	2e-04
COG1635	262	COG1635, THI4, Ribulose 1,5-bisphosphate synthetas	3e-04
pfam01946	229	pfam01946, Thi4, Thi4 family	3e-04
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	5e-04
TIGR03315	1012	TIGR03315, Se_ygfK, putative selenate reductase, Y	6e-04
TIGR02733	492	TIGR02733, desat_CrtD, C-3',4' desaturase CrtD	8e-04
COG1148	622	COG1148, HdrA, Heterodisulfide reductase, subunit	0.001
TIGR00292	254	TIGR00292, TIGR00292, thiazole biosynthesis enzyme	0.001
PLN02612	567	PLN02612, PLN02612, phytoene desaturase	0.003
PRK06126	545	PRK06126, PRK06126, hypothetical protein; Provisio	0.004
PRK04176	257	PRK04176, PRK04176, ribulose-1,5-biphosphate synth	0.004

>gnl|CDD|215362 PLN02676, PLN02676, polyamine oxidase

 Score =  792 bits (2047), Expect = 0.0
 Identities = 281/463 (60%), Positives = 332/463 (71%), Gaps = 14/463 (3%)

Query: 1   MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGA 60
           MD+     VII+GAG+SGISA K L+E GIEDILILEA+DRIGGR+R   F GVSVELGA
Sbjct: 21  MDAKPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGA 80

Query: 61  GWIAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVES 120
            W+ GVGG ESNP+WELA+K  LRT +SD+ N   NIY + G + P  V   S K A  S
Sbjct: 81  NWVEGVGGPESNPIWELANKLKLRTFYSDFDNLSSNIYKQDGGLYPKKVVQKSMKVADAS 140

Query: 121 AIANLKNLEATNSNIGEV---IKAATELPSS-PKTPLELAIDFILHDFEMAE-------- 168
                +NL  + S    V   I  A  L    PKTPLE+ ID+  +D+E AE        
Sbjct: 141 DEF-GENLSISLSAKKAVDISILTAQRLFGQVPKTPLEMVIDYYNYDYEFAEPPRVTSLK 199

Query: 169 -VEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHS 227
             EP  T+VDFGE E+ VAD RGY  L+Y +AE+FLST  GKI D RLKLNKVVRE+ +S
Sbjct: 200 NTEPNPTFVDFGEDEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYS 259

Query: 228 RNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFL 287
           +NGVTVKTEDG VY A YVI+S S+GVLQSDLI FKPPLP WK EAI + D+ VYTKIFL
Sbjct: 260 KNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFL 319

Query: 288 KFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDE 347
           KFP KFWP  PG EFF+YAHERRGYY FWQH+EN YPGSN+L VT+T+ ES+R+E QPD 
Sbjct: 320 KFPYKFWPSGPGTEFFLYAHERRGYYPFWQHLENEYPGSNVLFVTVTDEESRRIEQQPDS 379

Query: 348 ETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAG 407
           ET  E MEVL+ MFGP+IP ATDILVPRWW+NRF +GSYSN+PI       + IRAPV  
Sbjct: 380 ETKAEIMEVLRKMFGPNIPEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGR 439

Query: 408 IFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNERNNS 450
           ++FTGEHTSE++NGYVHG YLAGIDT   ++E I+K   R N 
Sbjct: 440 VYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIKKKKCRKNV 482

Length = 487

>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase

 Score =  206 bits (525), Expect = 4e-61
 Identities = 117/455 (25%), Positives = 184/455 (40%), Gaps = 57/455 (12%)

Query: 16  VSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVW 75
           ++G++A + L   G  D+ +LEA DR+GGR+R  +F G  +ELGA W  G      N + 
Sbjct: 1   LAGLAAARELLRAGF-DVTVLEARDRVGGRIRTVRFDGFLIELGAQWFHGAYPNLLNLLL 59

Query: 76  ELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNI 135
           EL  + GL              Y         G         + S +    +LE      
Sbjct: 60  ELGLELGLLLFPFPGDPFVRLKYRGGPYPDLPGDLPPPLFLLLRSLLELELSLEE----- 114

Query: 136 GEVIKAATELPSSPKTPLELAIDFILHDFEMAEVEPISTYV---DFGEREFLVADERGYA 192
                     P      L +A+  +  +    ++   S  +    F E   L+       
Sbjct: 115 ----------PIRRALLLLVALLLLAPELLELDLLSFSDLLSAAGFLELFLLLFRSLLAG 164

Query: 193 HLLYKMAEE-----------FLSTSDG-----------------------KILDNRLKLN 218
            L +   E            F     G                        +L  R++LN
Sbjct: 165 ALGFLPLELSARLALLSLRLFDLEDGGVVFPGGGFTLPLGGLPQLIAAALGLLGGRVRLN 224

Query: 219 KVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCD 278
             VR +  S +GVTV T DG   EA+ VI++  +GVL+   I F PPLP  K EAI    
Sbjct: 225 TRVRSITKSGDGVTVTTVDGRTIEADAVIVTVPLGVLKR--ILFLPPLPAAKQEAIRNLG 282

Query: 279 VMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGES 338
               +K+FL+F   FWP +      +                ++  G  +L+  +    +
Sbjct: 283 FGSVSKVFLEFETPFWPENGDLFGLLVTDGLSRGGYVLDTSPSSGSGRGVLLSYVLGDAA 342

Query: 339 KRVEAQPDEETLKEAMEVLQDMFGPD-IPNATDILVPRWWNNRFQRGSYSNYPIISDNQL 397
           + +E   DEE L+  +  L+ + GP+ +P+  + LV  W  + + RGSYS  P+  D++ 
Sbjct: 343 RELEDLSDEELLEAVLRDLRKLLGPEDVPDPVNFLVSDWHTDPYARGSYSYPPVGDDSRY 402

Query: 398 VNSIRAPV-AGIFFTGEHTSERFNGYVHGGYLAGI 431
             ++R PV  G+FF GEHTS  + G V G   +G+
Sbjct: 403 RPALRTPVGPGLFFAGEHTSGGYPGTVEGAVESGL 437

This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Length = 444

>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase

 Score =  179 bits (457), Expect = 3e-51
 Identities = 136/460 (29%), Positives = 213/460 (46%), Gaps = 55/460 (11%)

Query: 9   VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGG 68
           VI+IG G++GI+A + L +   + + +LE+ DRIGGRV  +   G  V++GA W+ GV  
Sbjct: 3   VIVIGGGIAGIAAARALHDASFK-VTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVC- 60

Query: 69  KESNPVWELASKSGL---RTC-----FSDYTNARYNIYDRSGKIIPSGVAA---DSYKKA 117
              NP+  L  + GL   RT        D+    Y ++D  G  +P  +     +++++ 
Sbjct: 61  -NENPLAPLIGRLGLPLYRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGETFERI 119

Query: 118 VESAIANLKNLEATNSNIGEVIKA-ATELPSSPKTPLE-LA---IDFILHDFE---MAEV 169
           +E      + +   +     +++A +  L   P+  LE LA   + + L   E    A+ 
Sbjct: 120 LEET----EKVRDEHEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRMEGWFAADA 175

Query: 170 EPISTYVDFGEREFLVADE----RGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQ 225
           + IS    + + E L        RGY  ++  +A+          LD RL  ++V + ++
Sbjct: 176 DTISLK-SWDQEELLEGGHGLMVRGYDPVINTLAKG---------LDIRLN-HRVTKIVR 224

Query: 226 HSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKI 285
              NGV V  EDG  + A+  I++  +GVL++++I F+P LP+WK EAI    V +  KI
Sbjct: 225 R-YNGVKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKI 283

Query: 286 FLKFPCKFWPCSPGKEFF-IYAHERRGYYTFWQ-HMENAYPGSNILVVTLTNGESKRVEA 343
            L F   FW   P  EF  + A    G   F   H    +P   +LV       ++ +E 
Sbjct: 284 ALHFDSVFW---PNVEFLGVVAPTSYGCSYFLNLHKATGHP---VLVYMPAGRLARDIEK 337

Query: 344 QPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRA 403
             DE     AM  L+ M  PD       LV RW ++    G YS   +   + L   +RA
Sbjct: 338 LSDEAAANFAMSQLKKML-PDATEPVQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRA 396

Query: 404 PVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRK 443
           PV  +FF GE TS  F G VHG Y  G+       E+ R 
Sbjct: 397 PVDNLFFAGEATSSDFPGSVHGAYSTGV----MAAEECRM 432

Length = 435

>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog

 Score =  117 bits (294), Expect = 7e-28
 Identities = 114/507 (22%), Positives = 216/507 (42%), Gaps = 85/507 (16%)

Query: 2   DSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVE---- 57
           +    + V+++GAG++G+ A + L   G + +++LE   R GGRV+  K  G  V     
Sbjct: 234 EGVEPANVVVVGAGLAGLVAARQLLSMGFK-VVVLEGRARPGGRVKTMKMKGDGVVAAAD 292

Query: 58  LGAGWIAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKA 117
           LG   + G+ G   NP+  LA + GL           + + D     +P G A D     
Sbjct: 293 LGGSVLTGING---NPLGVLARQLGL---------PLHKVRDICPLYLPDGKAVD---AE 337

Query: 118 VESAI----------------ANLKNLEATNSNIGEVIKAATELPSSPKTPLELAI-DFI 160
           ++S I                A ++ +++ + N+G  ++A   +    + P E  + ++ 
Sbjct: 338 IDSKIEASFNKLLDRVCKLRQAMIEEVKSVDVNLGTALEAFRHVYKVAEDPQERMLLNWH 397

Query: 161 LHDFEMAEVEPIST-----------YVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGK 209
           L + E A    +S            Y   G+  F+      +   L K    F       
Sbjct: 398 LANLEYANASLMSNLSMAYWDQDDPYEMGGDHCFIPGGNDTFVRELAKDLPIFYE----- 452

Query: 210 ILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKW 269
                    + V  +++  +GV V    G  +  + V+ +  +GVL+   I F P LP+ 
Sbjct: 453 ---------RTVESIRYGVDGVIVYA-GGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQR 502

Query: 270 KTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAH-----ERRG-YYTFWQHMENAY 323
           K +AI++    +  K+ L FP  FW    G E   + H       RG ++ F+ +  ++ 
Sbjct: 503 KKDAIQRLGYGLLNKVALLFPYNFW----GGEIDTFGHLTEDPSMRGEFFLFYSY--SSV 556

Query: 324 PGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPD---IPNATDILVPRWWNNR 380
            G  +L+  +    + + E     E++K  +++L+ +F P    +P+    +  RW  + 
Sbjct: 557 SGGPLLIALVAGDAAVKFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDC 616

Query: 381 FQRGSYSNYPIISDNQLVNSIRAPVAG--IFFTGEHTSERFNGYVHGGYLAGIDTGKAVV 438
           F  GSYS   + S     + +   V    +FF GE T++++   +HG +L+G+     ++
Sbjct: 617 FTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAANIL 676

Query: 439 EKIRK-----DNERNNSETQNFLLEPL 460
              R+     D++ NN E ++  L+ L
Sbjct: 677 RVARRRSLCIDDKVNNDEEEDDCLDQL 703

Length = 808

>gnl|CDD|215308 PLN02568, PLN02568, polyamine oxidase

 Score =  114 bits (286), Expect = 4e-27
 Identities = 111/550 (20%), Positives = 192/550 (34%), Gaps = 159/550 (28%)

Query: 9   VIIIGAGVSGISAGKIL----AENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIA 64
           ++IIGAG++G++A   L    A N + ++ ++E  DRIGGR+   +FGG  +E+GA WI 
Sbjct: 8   IVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGGERIEMGATWIH 67

Query: 65  GVGGKESNPVWELASK--------------------------------------SGLRTC 86
           G+GG   +PV+++A +                                      S L   
Sbjct: 68  GIGG---SPVYKIAQEAGSLESDEPWECMDGFPDRPKTVAEGGFEVDPSIVESISTLFRG 124

Query: 87  FSDYTNAR------------YNIYDRSGKIIPSG----------VAADSY---KKAVESA 121
             D    +              +  ++ ++  SG             D+Y     A E  
Sbjct: 125 LMDDAQGKLIEPSEVDEVDFVKLAAKAARVCESGGGGSVGSFLRRGLDAYWDSVSADEQI 184

Query: 122 IA----NLKNLE----ATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAEVEPIS 173
                 + K LE      + N      +A +L           +D        AE E   
Sbjct: 185 KGYGGWSRKLLEEAIFTMHENTQRTYTSADDL---------STLDL------AAESE--- 226

Query: 174 TYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTV 233
            Y  F   E  +A  +GY  ++  +A        G I     +L + V  ++     V +
Sbjct: 227 -YRMFPGEEITIA--KGYLSVIEALAS---VLPPGTI-----QLGRKVTRIEWQDEPVKL 275

Query: 234 KTEDGCVYEANYVILSASIGVLQS----DLISFKPPLPKWKTEAIEKCDVMVYTKIFLKF 289
              DG    A++VI++ S+GVL++    D   F PPLP +KT+AI +    V  K+F++ 
Sbjct: 276 HFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDFKTDAISRLGFGVVNKLFVEL 335

Query: 290 PCKFWPCSPGKEFFIYAH-ERRGYYTFWQHME---------NAYP---GSNILVVTLTNG 336
             +          F +         +  +H +         +  P    S++L+      
Sbjct: 336 SPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPIHKNSSVLLSWFAGK 395

Query: 337 ESKRVEAQPDEETLKEAMEVLQDMFGPDIPNA----------------------TDILVP 374
           E+  +E   DEE ++     L       +                           +L  
Sbjct: 396 EALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKS 455

Query: 375 RWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAG-------------IFFTGEHTSERFNG 421
           +W  +    GSYS   + S    ++ +  P+               + F GE T      
Sbjct: 456 KWGTDPLFLGSYSYVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYS 515

Query: 422 YVHGGYLAGI 431
             HG Y +G+
Sbjct: 516 TTHGAYFSGL 525

Length = 539

>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism]

 Score =  107 bits (268), Expect = 5e-25
 Identities = 111/473 (23%), Positives = 178/473 (37%), Gaps = 59/473 (12%)

Query: 1   MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGA 60
                 + VII+GAG++G+SA   L + G + + ILEA DR+GGR    + GG   +LG 
Sbjct: 2   TLPPKTADVIIVGAGLAGLSAAYELKKAGYQ-VQILEARDRVGGRSLTARAGGEYTDLGG 60

Query: 61  GWIAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVES 120
            +I        + +   A + G+             I D    I   G ++ S  K   +
Sbjct: 61  QYI----NPTHDALLAYAKEFGVPL--------EPFIRDGDNVIGYVG-SSKSTPKRSLT 107

Query: 121 AIANLKN----LEATNSNIGEVIKAAT-ELPSSPKTPLELAIDFILHDFEMAEVEPISTY 175
           A A+++     LEA   + GE+    T E        L       L              
Sbjct: 108 AAADVRGLVAELEAKARSAGELDPGLTPEDRELDLESLAAWKTSSLRGLSR----DPGAR 163

Query: 176 VDFGEREFLVADERGYAHLLY-----------KMAEEFLSTSDG---------KILDNRL 215
           V  G  E         A  L            ++  + L    G         K L  R+
Sbjct: 164 VSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRLGGMDQLAEAFAKQLGTRI 223

Query: 216 KLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIE 275
            LN+ VR +    +GVTV  +D   Y A+YV+++  + +L    I F P LP    +A +
Sbjct: 224 LLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIPLAILGQ--IDFAPLLPAEYKQAAK 281

Query: 276 KCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQH-MENAYP--GSNILVVT 332
                  TKI + F   FW     +E  I   E             +A    G  +L+ +
Sbjct: 282 GVPYGSATKIGVAFSRPFW-----EEAGILGGESLTDLGLGFISYPSAPFADGPGVLLGS 336

Query: 333 LTNGESKRV-EAQPDEETLKEAMEVLQDMFGPDIPNATD-ILVPRWWNNRFQRGSYSNYP 390
              G+   V +A P+ E  ++ +  L  +FG +  +  D      W  + +  G  + YP
Sbjct: 337 YAFGDDALVIDALPEAERRQKVLARLAKLFGDEAADPFDYGASVDWSKDPWTLGGTAAYP 396

Query: 391 IISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRK 443
                +L  ++ AP   I F G   +  F G++ G     I +G+    +I  
Sbjct: 397 PGQRTKLYPTLPAPHGRIHFAGTEHASEFGGWLEG----AIRSGQRAAAEIHA 445

Length = 450

>gnl|CDD|178144 PLN02529, PLN02529, lysine-specific histone demethylase 1

 Score =  103 bits (258), Expect = 2e-23
 Identities = 111/463 (23%), Positives = 212/463 (45%), Gaps = 77/463 (16%)

Query: 9   VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGG----VSVELGAGWIA 64
           VII+GAG++G++A + L   G + +++LE  +R GGRV  +K G      +V+LG   I 
Sbjct: 163 VIIVGAGLAGLAAARQLLSFGFK-VVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVIT 221

Query: 65  GVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIAN 124
           G+    +NP+  LA +  +           + + D      P G   D   K ++S I  
Sbjct: 222 GI---HANPLGVLARQLSI---------PLHKVRDNCPLYKPDGALVD---KEIDSNIEF 266

Query: 125 LKN--LE------------ATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAEVE 170
           + N  L+            A + ++G V++   +L    ++  E      L D+ +A +E
Sbjct: 267 IFNKLLDKVTELRQIMGGFANDISLGSVLERLRQLYGVARSTEERQ----LLDWHLANLE 322

Query: 171 PISTYVDFGEREFLVA-----DERGYAHLLYKMAEE--FLSTSDGKILDNRLK-----LN 218
               Y + G    L A     D+       Y+M  +  FL+  + ++++   +       
Sbjct: 323 ----YANAGCLSDLSAAYWDQDDP------YEMGGDHCFLAGGNWRLINALCEGVPIFYG 372

Query: 219 KVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCD 278
           K V  +++  +GV V      V++A+ V+ +  +GVL+   I F+P LP+ K  AI++  
Sbjct: 373 KTVDTIKYGNDGVEVIAGSQ-VFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLG 431

Query: 279 VMVYTKIFLKFPCKFWPCSPGKEFFIY------AHERRGYYTFWQHMENAYPGSNILVVT 332
             +  K+ + FP  FW    G+E   +      +++R  ++ F+ +  +   G   LV  
Sbjct: 432 FGLLNKVAMVFPSVFW----GEELDTFGCLNESSNKRGEFFLFYGY--HTVSGGPALVAL 485

Query: 333 LTNGESKRVEAQPDEETLKEAMEVLQDMFGP---DIPNATDILVPRWWNNRFQRGSYSNY 389
           +    ++R E       L   + VL+ ++ P   ++P+    +  RW ++    GSYS+ 
Sbjct: 486 VAGEAAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHV 545

Query: 390 PIISDNQLVNSIRAPVAG-IFFTGEHTSERFNGYVHGGYLAGI 431
            + S     + +   V+G +FF GE T+ ++   +HG +L+G+
Sbjct: 546 RVQSSGSDYDILAESVSGRLFFAGEATTRQYPATMHGAFLSGL 588

Length = 738

>gnl|CDD|178578 PLN03000, PLN03000, amine oxidase

 Score = 87.8 bits (217), Expect = 3e-18
 Identities = 62/249 (24%), Positives = 115/249 (46%), Gaps = 23/249 (9%)

Query: 219 KVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCD 278
           K V+ +++  NGV V      VYE + V+ +  +GVL++  I F P LP+ K + I++  
Sbjct: 397 KTVQTIRYGSNGVKV-IAGNQVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLG 455

Query: 279 VMVYTKIFLKFPCKFWPCSPGKEFFIYAH-----ERRG-YYTFWQHMENAYPGSNILVVT 332
             +  K+ + FP  FW      +   + H       RG ++ F+ +   A  G  +L+  
Sbjct: 456 FGLLNKVAMLFPYVFW----STDLDTFGHLTEDPNYRGEFFLFYSYAPVA--GGPLLIAL 509

Query: 333 LTNGESKRVEAQPDEETLKEAMEVLQDMFGP---DIPNATDILVPRWWNNRFQRGSYSNY 389
           +    + + E  P  + +   + +L+ ++ P   ++P+    +  RW  + F  GSYSN 
Sbjct: 510 VAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNV 569

Query: 390 PIISDNQLVNSIRAPVAG--IFFTGEHTSERFNGYVHGGYLAGIDTG-----KAVVEKIR 442
            + +     + +   V    +FF GE T+ R+   +HG ++ G+         A    IR
Sbjct: 570 AVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAKARGIR 629

Query: 443 KDNERNNSE 451
           K  +RN S+
Sbjct: 630 KRIDRNPSK 638

Length = 881

>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase

 Score = 79.1 bits (195), Expect = 2e-15
 Identities = 68/258 (26%), Positives = 120/258 (46%), Gaps = 22/258 (8%)

Query: 190  GYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQH----------SRNGVTVKTEDGC 239
            G AH + K     +  S  + LD  + LN VV ++ +          SR  V V T +G 
Sbjct: 925  GGAHCMIKGGYSNVVESLAEGLD--IHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGS 982

Query: 240  VYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPG 299
             +  + V+++  +G L+++ I F PPLP WK  +I++    V  K+ L+FP  FW  S  
Sbjct: 983  EFLGDAVLITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDS-- 1040

Query: 300  KEFFIYAHE---RRGY-YTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAME 355
             ++F    E    RG  + FW   +    G+ +L+  +    +   ++    + +  A+ 
Sbjct: 1041 VDYFGATAEETDLRGQCFMFWNVKKTV--GAPVLIALVVGKAAIDGQSMSSSDHVNHALM 1098

Query: 356  VLQDMFGPD-IPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAG-IFFTGE 413
            VL+ +FG   +P+    +V  W  + F  G+YS   I +  +  + +  PV   +FF GE
Sbjct: 1099 VLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVENCLFFAGE 1158

Query: 414  HTSERFNGYVHGGYLAGI 431
             T +     V G  ++G+
Sbjct: 1159 ATCKEHPDTVGGAMMSGL 1176

Length = 1713

>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism]

 Score = 74.3 bits (183), Expect = 3e-14
 Identities = 96/491 (19%), Positives = 157/491 (31%), Gaps = 103/491 (20%)

Query: 8   PVIIIGAGVSGISAGKILAENGIE-DILILEASDRIGGRVRNEKFGGVSVELGAGWIAGV 66
            + IIG G++G+SA   L + G + ++ + EA DR+GG +R  K  G   E G      +
Sbjct: 2   KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHF--L 59

Query: 67  GGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLK 126
             KE     +L  + GL      + +         GK+ P               I  + 
Sbjct: 60  ARKEEIL--DLIKELGLED-KLLWNSTARKYIYYDGKLHPIPT----------PTILGIP 106

Query: 127 NLEATNSNIGEVIKAATELPSSPKTPLELAI---DFILHDF--EMAE--VEP-------- 171
            L    S+   + +A  E         +  I   +FI   F  E+ E  +EP        
Sbjct: 107 LLL--LSSEAGLARALQEFIRPKSWEPKQDISVGEFIRRRFGEEVVERFIEPLLEGIYAG 164

Query: 172 ----ISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKI----------------- 210
               +S    F         ER Y  LL    +E L     K                  
Sbjct: 165 DADKLSAAAAFPILA---RAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEAL 221

Query: 211 ---LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSAS----IGVLQSDLISFK 263
              L+ +++    V ++     G T+    G    A+ VI +A       +L  + +S  
Sbjct: 222 AEKLEAKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELARLLGDEAVSKA 281

Query: 264 PPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTF----WQHM 319
               ++ +       V +  K     P  +       + +I A       TF    W H 
Sbjct: 282 AKELQYTSVVT--VVVGLDEKDNPALPDGYGLLIADDDPYILA------ITFHSNKWPHE 333

Query: 320 ENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWN- 378
             A  G  +L V       + V    DEE +   ++ L+ + G +         P +   
Sbjct: 334 --APEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKLGGINGD-------PVFVEV 384

Query: 379 NRFQRGSYSNYPIISDN--QLVNSIRAP----VAGIFFTGEHTSERFNGYVHGGYLAGID 432
            R++       P         +  IRA       GI   G +      G    G    I 
Sbjct: 385 TRWKYA----MPQYEVGHLDRLEPIRAALKGAYPGIKSVGRY----GEGV---GLPDCIA 433

Query: 433 TGKAVVEKIRK 443
            GK   E++  
Sbjct: 434 AGKEAAEQLLS 444

Length = 444

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 62.1 bits (152), Expect = 1e-12
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 11 IIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKE 70
          I+GAG+SG+ A  +LA+ G  D+L+LE  DRIGG   +E+  G   + GA          
Sbjct: 1  IVGAGLSGLVAAYLLAKRGK-DVLVLEKRDRIGGNAYSERDPGYRHDYGAHIFHT----S 55

Query: 71 SNPVWELASK 80
             V EL  +
Sbjct: 56 YPNVRELLDE 65

Length = 66

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 62.1 bits (151), Expect = 3e-10
 Identities = 84/514 (16%), Positives = 150/514 (29%), Gaps = 105/514 (20%)

Query: 9   VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGG 68
           V++IGAG++G++A  +LA  G+  + +LE +DR+GGR R  +  G   + G  W      
Sbjct: 6   VVVIGAGLNGLAAAALLARAGL-KVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLMPDP 64

Query: 69  KESNPVWELASKS---GLRTCFSDYTNARYNIYDRSGKIIPS----GVAADSYKKAVESA 121
               P++         GL     D     +     +  +           +S +     A
Sbjct: 65  G---PLFRELGNLDADGLDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDGEA 121

Query: 122 IANL------KNLEATNSNIGEVI-----------KAATELPSSPKTPLELAIDFILHDF 164
           +A                 +               +    L  S  + L+        + 
Sbjct: 122 LARYLRLLARLYELLAALLLAPPRSELLLVPDTPERLLRLLGFSLTSALDFFRGRFGSEL 181

Query: 165 --------EMAEVEPISTYVDFGEREFLVADERGYAHL----------LYKMAEEFLSTS 206
                    +    P ST          +    G  +           L ++A E     
Sbjct: 182 LRALLAYSAVYGGAPPSTPPALYLLLSHLGLSGGVFYPRGGMGALVDALAELARE----H 237

Query: 207 DGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPL 266
            G+I        +V + L     GV V+T DG   EA+ V+ +A   +L   L       
Sbjct: 238 GGEIRTG----AEVSQILVEGGKGVGVRTSDGENIEADAVVSNADPALLARLL----GEA 289

Query: 267 PKWKT-EAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQ--HMENAY 323
            + +   +  K    +   ++L       P +      +            +    + A 
Sbjct: 290 RRPRYRGSYLKSLSAL--SLYLGLKGDLLPLAHHTTILLG-----DTREQIEEAFDDRAG 342

Query: 324 PGSNILVVTLTNGESKR--------------VEAQPDEETLKEAMEVLQDMFGPDIPNAT 369
               + V   +  +                 V +  D + LKE++    D      P   
Sbjct: 343 RPPPLYVSIPSLTDPSLAPEGKHSTFAQLVPVPSLGDYDELKESLADAIDALEELAPGLR 402

Query: 370 DILV------PRWW--NNRFQRGSYSNYPIISDNQLVNSI----RAPVAGIFFTGEHTSE 417
           D +V      P           G        + +QL          P+ G++  G     
Sbjct: 403 DRIVAREVLTPLDLERYLGLPGGDI-FGGAHTLDQLGPFRPPPKSTPIKGLYLVG----- 456

Query: 418 RFNGYVH-GGYLAGIDT-GKAVVEKIRKDNERNN 449
                 H GG + G+     AV   I  D  R +
Sbjct: 457 ---ASTHPGGGVPGVPGSAAAVALLIDLDRGRGS 487

Length = 487

>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed

 Score = 56.0 bits (136), Expect = 2e-08
 Identities = 24/53 (45%), Positives = 36/53 (67%), Gaps = 1/53 (1%)

Query: 9  VIIIGAGVSGISAGKILAENGIE-DILILEASDRIGGRVRNEKFGGVSVELGA 60
          V IIG G++G+SA   L + G + DI +LEASDR+GG+++  +  G  +ELG 
Sbjct: 3  VAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGP 55

Length = 451

>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)

Query: 2   DSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFG-GVSVELGA 60
           DS  R  +I++GAG +G++A + L   G   + +LEA  RIGGRV  ++    V V+LGA
Sbjct: 689 DSVDRKKIIVVGAGPAGLTAARHLQRQGFS-VTVLEARSRIGGRVYTDRSSLSVPVDLGA 747

Query: 61  GWIAGV 66
             I GV
Sbjct: 748 SIITGV 753

Length = 1713

>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 7/102 (6%)

Query: 9   VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGG 68
           V ++GAGVSG++A   LA     ++L+ EA DR+GG + +    G   E G         
Sbjct: 15  VAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQ---- 70

Query: 69  KESNPVWELASKSGLR--TCFSDYTNARYNIYDRSGKIIPSG 108
             S+P    A  SGLR    F D    RY +++   + +PS 
Sbjct: 71  -PSDPELTSAVDSGLRDDLVFPDPQAPRYVVWNGKLRPLPSN 111

Length = 496

>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 1  MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44
          +   + + V IIGAG SG++A   L + G+ D +I E  D +GG
Sbjct: 3  VGVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGG 46

Length = 443

>gnl|CDD|213540 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 9/105 (8%)

Query: 6   RSPVIIIGAGVSGISAGKILAENGIE---DILILEASDRIGGRVRNEKFGGVSVELGAGW 62
           +  V+IIG G+SG+ A   L +   E   ++ ++EASDR+GG+++  K  G  +E G   
Sbjct: 2   KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDS 61

Query: 63  IAGVGGKESNPVWELASKSGLRTCF-SDYTNARYNIYDRSGKIIP 106
                        +L    GL     SD T  RY +    GK++P
Sbjct: 62  FLER----KKSAPDLVKDLGLEHVLVSDATGQRY-VLVNRGKLMP 101

This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 462

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 46.5 bits (111), Expect = 9e-06
 Identities = 54/254 (21%), Positives = 91/254 (35%), Gaps = 63/254 (24%)

Query: 9   VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV--RNEKFGGVSVELGAGWIAGV 66
           V++IG G+ G+S    LA  G+  + +LE    +      RN           AG +   
Sbjct: 2   VVVIGGGIVGLSTAYELARRGL-SVTLLER-GDLASGASGRN-----------AGLLHPG 48

Query: 67  GGKESNP-VWELASKSGLRTCFSDYTNARYNI---YDRSGKIIPSGVAADSYKKAVESAI 122
             KE  P +  LA +S  R  + +       I   + R+G ++ +       +  +++  
Sbjct: 49  LRKERAPLLARLALES--RDLWRELI-EELGIDCDFRRTGVLVLA-----RDEAELDALR 100

Query: 123 ANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAEVEP-ISTYVDFG-- 179
                L A    + E++ A                       E+ E+EP +S  +  G  
Sbjct: 101 RLAAALRALGLPV-ELLDAE----------------------ELRELEPGLSPGIRGGLF 137

Query: 180 EREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGC 239
             +    D       L + AE          L   +     V  L+    GVTV+TEDG 
Sbjct: 138 YPDGGHVDPARLLRALARAAEA---------LGVEILEGTEVTGLEREGGGVTVETEDG- 187

Query: 240 VYEANYVILSASIG 253
              A+ V+ + S G
Sbjct: 188 EIRADKVVNADSSG 201

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown]

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 2/52 (3%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFG-GVSVELG 59
          V I GAG++G++A   LA+ G  D+ + EA DR+GG+V + +   G  VE G
Sbjct: 3  VAIAGAGLAGLAAAYELADAGY-DVTLYEARDRLGGKVASWRDSDGNHVEHG 53

Length = 485

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 46.5 bits (111), Expect = 3e-05
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 2   DSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN 48
              SR  V +IGAG +G++A   LA  G   + + E  +  GG V+N
Sbjct: 535 GIGSRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFEREENAGGVVKN 580

Length = 1019

>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional

 Score = 44.9 bits (107), Expect = 7e-05
 Identities = 18/49 (36%), Positives = 33/49 (67%), Gaps = 1/49 (2%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVE 57
          + I+G G++G++A   LA+ G E + + EA D++GG   + +FGG+ +E
Sbjct: 2  IAIVGGGIAGLAAAYRLAKRGHE-VTVFEADDQLGGLAASFEFGGLPIE 49

Length = 434

>gnl|CDD|225459 COG2907, COG2907, Predicted NAD/FAD-binding protein [General function prediction only]

 Score = 44.4 bits (105), Expect = 9e-05
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 1  MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKF----GGVSV 56
               R  + +IG+G+SG+SA  +L+     D+ + EA  R+GG           GGV V
Sbjct: 3  NQPHPRRKIAVIGSGISGLSAAWLLS--RRHDVTLFEADRRLGGHANTVAGNTDGGGVFV 60

Query: 57 ELG 59
          + G
Sbjct: 61 DTG 63

Length = 447

>gnl|CDD|178578 PLN03000, PLN03000, amine oxidase

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 8/83 (9%)

Query: 4   TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFG----GVSVELG 59
           +S+S V+I+GAG+SG++A + L   G + + +LE   R GGRV  +K      G + +LG
Sbjct: 182 SSKSSVVIVGAGLSGLAAARQLMRFGFK-VTVLEGRKRPGGRVYTKKMEANRVGAAADLG 240

Query: 60  AGWIAGVGGKESNPVWELASKSG 82
              + G  G   NP+  +A + G
Sbjct: 241 GSVLTGTLG---NPLGIIARQLG 260

Length = 881

>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 4  TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELG 59
          T++  V+IIGAG +G++A   L + G   + +LEA   +GG  R   + G   ++G
Sbjct: 2  TNKKSVVIIGAGPAGLTAAYELLKRGY-PVTVLEADPVVGGISRTVTYKGNRFDIG 56

Length = 479

>gnl|CDD|236198 PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygenase; Validated

 Score = 43.6 bits (104), Expect = 2e-04
 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 3/44 (6%)

Query: 6  RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR--IGGRVR 47
          R+ V IIGAG +G+  G++L   GI+ + +LE   R  + GR+R
Sbjct: 2  RTQVAIIGAGPAGLLLGQLLHLAGIDSV-VLERRSREYVEGRIR 44

Length = 392

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN 48
          V+I+GAG +G SA + LA+ G+ D+L+LE     G +   
Sbjct: 6  VVIVGAGPAGSSAARRLAKAGL-DVLVLEKGSEPGAKPCC 44

Length = 396

>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 5  SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44
            S VII+GAG SG++A   LA+ G+  + I E     GG
Sbjct: 29 LESDVIIVGAGPSGLTAAYYLAKAGL-KVAIFERKLSFGG 67

Length = 262

>gnl|CDD|145231 pfam01946, Thi4, Thi4 family

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 1  MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44
          +   + S V+I+GAG SG++A   LA+ G++ + I+E S   GG
Sbjct: 12 LLDYAESDVVIVGAGPSGLTAAYYLAKKGLK-VAIIERSLSPGG 54

This family includes a putative thiamine biosynthetic enzyme. Length = 229

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 70/445 (15%), Positives = 124/445 (27%), Gaps = 99/445 (22%)

Query: 9   VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGG 68
           V+IIG G+ G+SA   LAE G  D+ +LEA    G        GG +     G +A    
Sbjct: 7   VVIIGGGIVGLSAAYYLAERGA-DVTVLEA-GEAG--------GGAAGRNAGGILAPWAS 56

Query: 69  KESNPVWELASKSGLRTCFSDYTNARYNI---YDRSGKIIPSGVAADSYKKAVESAIANL 125
                     +   L        +          R G +  +          +E   A L
Sbjct: 57  PGGELEVRPLADLSLA--LWRELSEELGTGAGLRRRGLLDLAAREGLKGLAQLERLAAEL 114

Query: 126 KNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGEREFLV 185
           +                                      + AE   +   +        +
Sbjct: 115 EAAGED-----------------------------AELLDAAEAAELEPALGPDFVCGGL 145

Query: 186 ADERG-------YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDG 238
            D  G           L   AEE             ++    V  L+     V V+T+ G
Sbjct: 146 FDPTGGHLDPRLLTRALAAAAEELGVV--------IIEGGTPVTSLERDGRVVGVETDGG 197

Query: 239 CVYEANYVILSAS--IGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPC 296
            + EA+ V+L+A    G L + L     PL   + +A+                      
Sbjct: 198 TI-EADKVVLAAGAWAGELAATLGELPLPLRPVRGQALT-------------TEPPEGLL 243

Query: 297 SPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEV 356
           + G    +   +  G Y      +        +  T   G     + + ++  + E + V
Sbjct: 244 ADGLAPVVLVVDDGGGY-IRPRGDGRL----RVGGTDEEGGDDPSDPEREDLVIAELLRV 298

Query: 357 LQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTS 416
            + +     P   D  +   W       +    P+I          AP+  ++       
Sbjct: 299 ARALL----PGLADAGIEAAWAGLRPPTTPDGLPVIGR-------AAPLPNLYV------ 341

Query: 417 ERFNGYVHGGYLAGIDTGKAVVEKI 441
               G+   G+      G+ + + I
Sbjct: 342 --ATGHGGHGFTLAPALGRLLADLI 364

Length = 387

>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 3   STSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN 48
            +S   V +IGAG +G+SAG  LA  G   + + E  ++ GG V+N
Sbjct: 534 KSSAHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKEKPGGVVKN 578

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012

>gnl|CDD|233987 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 3/62 (4%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGV-- 66
          V++IGAG++G++A  +LA+ G   + +LE   + GG     +  G + ++GA  +AG+  
Sbjct: 4  VVVIGAGIAGLTAAALLAKRGY-RVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLEP 62

Query: 67 GG 68
          GG
Sbjct: 63 GG 64

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 492

>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 9   VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV 46
           V++IG GV+GI+A   LA+ G +  L+ E    IGGR+
Sbjct: 127 VLVIGGGVAGITAALELADMGFKVYLV-EKEPSIGGRM 163

Length = 622

>gnl|CDD|232908 TIGR00292, TIGR00292, thiazole biosynthesis enzyme

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 19/38 (50%), Positives = 27/38 (71%), Gaps = 1/38 (2%)

Query: 7  SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44
          S VII+GAG SG++A   LA+NG++ + +LE S   GG
Sbjct: 22 SDVIIVGAGPSGLTAAYYLAKNGLK-VCVLERSLAFGG 58

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine. This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 254

>gnl|CDD|215330 PLN02612, PLN02612, phytoene desaturase

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 1/38 (2%)

Query: 9   VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV 46
           V+I GAG++G+S  K LA+ G + IL LEA D +GG+V
Sbjct: 96  VVIAGAGLAGLSTAKYLADAGHKPIL-LEARDVLGGKV 132

Length = 567

>gnl|CDD|235704 PRK06126, PRK06126, hypothetical protein; Provisional

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 1  MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVS 55
          M++TS +PV+I+G G  G++    L   G++ IL+    +R  G   N K    S
Sbjct: 2  MENTSETPVLIVGGGPVGLALALDLGRRGVDSILV----ERKDGTAFNPKANTTS 52

Length = 545

>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional

 Score = 38.6 bits (91), Expect = 0.004
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 1  MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44
          +D      V I+GAG SG++A   LA+ G+  + + E     GG
Sbjct: 21 LDYLE-VDVAIVGAGPSGLTAAYYLAKAGL-KVAVFERKLSFGG 62

Length = 257

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	496
PLN02676	487	polyamine oxidase	100.0
PLN02268	435	probable polyamine oxidase	100.0
PLN02568	539	polyamine oxidase	100.0
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	100.0
PLN03000	881	amine oxidase	100.0
PLN02529	738	lysine-specific histone demethylase 1	100.0
PLN02328	808	lysine-specific histone demethylase 1 homolog	100.0
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	100.0
PLN02976	1713	amine oxidase	100.0
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	100.0
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	100.0
PRK12416	463	protoporphyrinogen oxidase; Provisional	100.0
PRK11883	451	protoporphyrinogen oxidase; Reviewed	100.0
PLN02576	496	protoporphyrinogen oxidase	100.0
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	100.0
PRK07233	434	hypothetical protein; Provisional	100.0
PLN02612	567	phytoene desaturase	100.0
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	100.0
PLN02487	569	zeta-carotene desaturase	100.0
PRK07208	479	hypothetical protein; Provisional	100.0
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	100.0
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	100.0
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	100.0
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	100.0
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	100.0
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.97
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	99.97
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.96
COG3349	485	Uncharacterized conserved protein [Function unknow	99.95
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.92
COG2907	447	Predicted NAD/FAD-binding protein [General functio	99.9
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	99.78
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.76
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	99.72
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	99.71
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	99.67
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.55
COG2081	408	Predicted flavoproteins [General function predicti	99.54
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.49
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.47
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.46
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.46
PRK06847	375	hypothetical protein; Provisional	99.45
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.45
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.44
PRK10157	428	putative oxidoreductase FixC; Provisional	99.44
PRK09126	392	hypothetical protein; Provisional	99.44
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.44
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.44
PRK10015	429	oxidoreductase; Provisional	99.43
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.42
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.4
PRK06184	502	hypothetical protein; Provisional	99.4
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.39
PRK07045	388	putative monooxygenase; Reviewed	99.39
PRK08013	400	oxidoreductase; Provisional	99.39
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.39
PRK07236	386	hypothetical protein; Provisional	99.38
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.38
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	99.38
PRK07588	391	hypothetical protein; Provisional	99.37
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	99.36
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.36
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.36
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.35
PRK06185	407	hypothetical protein; Provisional	99.35
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	99.35
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.35
COG0579	429	Predicted dehydrogenase [General function predicti	99.34
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.34
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	99.33
PRK06834	488	hypothetical protein; Provisional	99.32
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.32
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.3
PRK08132	547	FAD-dependent oxidoreductase; Provisional	99.3
PRK06126	545	hypothetical protein; Provisional	99.3
PRK08244	493	hypothetical protein; Provisional	99.3
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.3
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.29
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	99.27
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.26
PLN02463	447	lycopene beta cyclase	99.26
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	99.25
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.25
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.23
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.22
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.22
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.21
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.21
PRK07190	487	hypothetical protein; Provisional	99.2
PRK07538	413	hypothetical protein; Provisional	99.2
PRK05868	372	hypothetical protein; Validated	99.2
PRK08163	396	salicylate hydroxylase; Provisional	99.2
PRK05257	494	malate:quinone oxidoreductase; Validated	99.19
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.19
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.18
PRK11445	351	putative oxidoreductase; Provisional	99.18
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.17
PLN02697	529	lycopene epsilon cyclase	99.17
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.17
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	99.17
PRK06753	373	hypothetical protein; Provisional	99.16
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	99.16
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.15
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.14
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.14
PRK06996	398	hypothetical protein; Provisional	99.14
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.14
PRK08294	634	phenol 2-monooxygenase; Provisional	99.13
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.12
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	99.12
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.11
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.11
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.11
PLN02661	357	Putative thiazole synthesis	99.07
TIGR00275	400	flavoprotein, HI0933 family. The model when search	99.07
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	99.07
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.06
PRK06475	400	salicylate hydroxylase; Provisional	99.06
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	99.06
PRK08274	466	tricarballylate dehydrogenase; Validated	99.05
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	99.05
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.04
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	99.03
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	99.0
PRK07121	492	hypothetical protein; Validated	98.99
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.96
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.95
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.94
PRK09897	534	hypothetical protein; Provisional	98.93
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.92
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.91
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.9
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.9
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	98.89
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.88
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.88
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.88
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.87
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	98.85
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.85
PRK06175	433	L-aspartate oxidase; Provisional	98.84
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.83
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.81
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.81
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.81
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.81
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.79
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.78
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.76
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.76
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.76
PRK12839	572	hypothetical protein; Provisional	98.75
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.75
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.75
PRK06116	450	glutathione reductase; Validated	98.75
PLN02985	514	squalene monooxygenase	98.75
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.74
PRK07804	541	L-aspartate oxidase; Provisional	98.73
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.73
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.73
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.72
PTZ00367	567	squalene epoxidase; Provisional	98.72
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.71
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.71
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.71
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.7
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.7
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.69
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.69
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.68
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.67
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.67
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	98.65
PRK08401	466	L-aspartate oxidase; Provisional	98.65
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.65
PRK07395	553	L-aspartate oxidase; Provisional	98.65
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.63
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.62
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.61
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.61
PRK08275	554	putative oxidoreductase; Provisional	98.59
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.59
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.58
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.58
PLN02815	594	L-aspartate oxidase	98.57
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.56
PRK08071	510	L-aspartate oxidase; Provisional	98.56
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.56
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.56
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.55
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.55
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.54
PRK09077	536	L-aspartate oxidase; Provisional	98.51
PRK07512	513	L-aspartate oxidase; Provisional	98.49
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	98.47
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.44
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.43
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.41
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.37
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.35
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.34
PRK12831	464	putative oxidoreductase; Provisional	98.33
PLN02852	491	ferredoxin-NADP+ reductase	98.33
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.32
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.31
PRK14694	468	putative mercuric reductase; Provisional	98.3
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	98.3
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.29
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.29
PTZ00188	506	adrenodoxin reductase; Provisional	98.28
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.28
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.27
PRK10262	321	thioredoxin reductase; Provisional	98.27
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.25
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.22
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.22
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.22
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.22
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.21
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.2
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.2
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.2
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	98.19
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.18
PRK14727	479	putative mercuric reductase; Provisional	98.18
PRK06370	463	mercuric reductase; Validated	98.17
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.16
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	98.14
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.14
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.13
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.13
PTZ00058	561	glutathione reductase; Provisional	98.13
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	98.12
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.12
TIGR02053	463	MerA mercuric reductase. This model represents the	98.1
PRK13748	561	putative mercuric reductase; Provisional	98.09
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.09
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.08
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.08
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.07
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.07
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.06
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	98.05
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.05
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	98.04
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.03
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	98.03
PTZ00052	499	thioredoxin reductase; Provisional	98.03
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.0
PLN02507	499	glutathione reductase	97.99
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.98
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.98
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.97
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.96
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	97.94
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.93
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.91
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.9
COG3573	552	Predicted oxidoreductase [General function predict	97.88
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.88
KOG2960	328	consensus Protein involved in thiamine biosynthesi	97.86
PLN02546	558	glutathione reductase	97.86
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.84
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.84
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	97.84
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.83
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	97.81
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.8
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.8
PRK13984	604	putative oxidoreductase; Provisional	97.78
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.77
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.77
PF07156	368	Prenylcys_lyase: Prenylcysteine lyase; InterPro: I	97.76
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.72
PRK02106	560	choline dehydrogenase; Validated	97.69
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.68
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	97.68
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.68
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.67
KOG2853	509	consensus Possible oxidoreductase [General functio	97.66
COG4716	587	Myosin-crossreactive antigen [Function unknown]	97.64
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.62
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.61
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.59
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.56
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	97.56
PRK07846	451	mycothione reductase; Reviewed	97.54
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.53
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.52
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.51
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.48
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.47
PLN02507	499	glutathione reductase	97.46
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.46
KOG2852	380	consensus Possible oxidoreductase [General functio	97.46
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.45
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.44
PRK06370	463	mercuric reductase; Validated	97.43
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.41
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.38
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.38
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.37
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.34
TIGR02053	463	MerA mercuric reductase. This model represents the	97.33
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.32
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.31
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.29
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.27
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.25
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	97.25
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.24
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	97.24
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	97.24
PRK07846	451	mycothione reductase; Reviewed	97.24
PRK14727	479	putative mercuric reductase; Provisional	97.21
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.17
PRK14694	468	putative mercuric reductase; Provisional	97.1
PRK13748	561	putative mercuric reductase; Provisional	97.09
PTZ00052	499	thioredoxin reductase; Provisional	97.09
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.08
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	96.99
PLN02785	587	Protein HOTHEAD	96.94
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	96.93
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	96.93
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	96.87
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	96.84
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	96.77
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	96.75
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	96.64
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	96.61
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	96.3
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.1
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	95.94
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.7
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.69
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	95.65
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	95.55
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	95.48
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	95.46
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	95.46
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	95.4
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	95.37
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.33
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	95.25
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	95.21
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.2
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.2
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	95.16
PRK13512	438	coenzyme A disulfide reductase; Provisional	95.15
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	95.03
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	94.99
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	94.97
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	94.89
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	94.75
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	94.71
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	94.7
PRK14989	847	nitrite reductase subunit NirD; Provisional	94.62
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.6
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.59
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	94.56
PTZ00058	561	glutathione reductase; Provisional	94.54
PTZ00153	659	lipoamide dehydrogenase; Provisional	94.53
KOG2755	334	consensus Oxidoreductase [General function predict	94.5
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.5
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	94.44
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	94.33
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	94.29
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	94.28
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.27
PRK10262	321	thioredoxin reductase; Provisional	94.25
PRK06116	450	glutathione reductase; Validated	94.19
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	94.19
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.16
COG0569	225	TrkA K+ transport systems, NAD-binding component [	94.1
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	94.08
PRK15116	268	sulfur acceptor protein CsdL; Provisional	93.96
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.91
PRK12831	464	putative oxidoreductase; Provisional	93.89
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	93.88
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	93.86
PLN02546	558	glutathione reductase	93.85
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.78
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	93.78
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.76
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	93.75
PTZ00082	321	L-lactate dehydrogenase; Provisional	93.69
PRK12770	352	putative glutamate synthase subunit beta; Provisio	93.68
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	93.61
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	93.53
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	93.53
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	93.5
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	93.49
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	93.48
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.47
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	93.4
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	93.39
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	93.35
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	93.34
PRK04148	134	hypothetical protein; Provisional	93.32
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	93.31
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	93.23
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	93.22
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	93.18
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	93.16
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	93.15
PRK06719	157	precorrin-2 dehydrogenase; Validated	92.92
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.84
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	92.81
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	92.78
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	92.72
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	92.64
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	92.63
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.61
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.61
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	92.53
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	92.47
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	92.42
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	92.42
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	92.37
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	92.35
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	92.31
PRK12548	289	shikimate 5-dehydrogenase; Provisional	92.28
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	92.19
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	92.16
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	92.09
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	92.08
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	92.05
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	92.04
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	91.98
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	91.9
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	91.87
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	91.83
PRK08328	231	hypothetical protein; Provisional	91.83
PRK12814	652	putative NADPH-dependent glutamate synthase small	91.8
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	91.65
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	91.64
PRK08306	296	dipicolinate synthase subunit A; Reviewed	91.55
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	91.49
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	91.48
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	91.46
PRK11730	715	fadB multifunctional fatty acid oxidation complex	91.44
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	91.42
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	91.4
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.34
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	91.33
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	91.3
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	91.28
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	91.27
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.25
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	91.06
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	91.01
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	91.01
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.99
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	90.98
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	90.94
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	90.88
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	90.76
PRK08223	287	hypothetical protein; Validated	90.68
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	90.65
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	90.6
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.49
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	90.45
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	90.41
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	90.31
PRK12779	944	putative bifunctional glutamate synthase subunit b	90.31
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	90.21
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	90.2
COG0281	432	SfcA Malic enzyme [Energy production and conversio	90.2
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	90.19
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	90.14
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	90.13
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	89.99
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	89.89
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	89.87
PRK07417	279	arogenate dehydrogenase; Reviewed	89.84
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.83
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	89.77
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	89.76
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	89.76
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	89.7
PRK06223	307	malate dehydrogenase; Reviewed	89.7
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	89.68
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	89.63
PTZ00117	319	malate dehydrogenase; Provisional	89.51
PLN02353	473	probable UDP-glucose 6-dehydrogenase	89.26
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	89.21
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	89.09
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.06
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	88.99
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	88.88
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	88.85
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	88.82
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	88.82
PRK07454	241	short chain dehydrogenase; Provisional	88.81
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	88.77
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.75
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	88.64
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	88.58
PRK07774	250	short chain dehydrogenase; Provisional	88.55

>PLN02676 polyamine oxidase

Probab=100.00  E-value=5.1e-57  Score=456.92  Aligned_cols=444  Identities=61%  Similarity=1.033  Sum_probs=335.6

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHh
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASK   80 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~   80 (496)
                      |..+.++||+|||||++||+||++|+++|.++|+|||+++++|||+.+.+.+|..+|.|++|++.+++...+++++++++
T Consensus        21 ~~~~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~  100 (487)
T PLN02676         21 MDAKPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGANWVEGVGGPESNPIWELANK  100 (487)
T ss_pred             hcccCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeEEecCCEEEEcccCcccChHHHHHHh
Confidence            55667889999999999999999999999734999999999999999999999999999999986444467889999999


Q ss_pred             cCCccccccCCCcceEEEcCCCcccChhHHHHHHH---HHHH---HHHHHh--ccccccchhHHHHHHhhhcCCCCCCCh
Q 010995           81 SGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYK---KAVE---SAIANL--KNLEATNSNIGEVIKAATELPSSPKTP  152 (496)
Q Consensus        81 lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (496)
                      +|+.....++......++..+|+.++.........   ...+   ......  ...++.+......+..     ......
T Consensus       101 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-----~~~~~~  175 (487)
T PLN02676        101 LKLRTFYSDFDNLSSNIYKQDGGLYPKKVVQKSMKVADASDEFGENLSISLSAKKAVDISILTAQRLFG-----QVPKTP  175 (487)
T ss_pred             cCCceeecCccccceeEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCccHHHHHHHHh-----hCCCCH
Confidence            99987764444333446667888776433222111   1111   111110  0111111111122221     111122


Q ss_pred             HHHHHHHHHhhcccccc-CCc--------ccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEE
Q 010995          153 LELAIDFILHDFEMAEV-EPI--------STYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRE  223 (496)
Q Consensus       153 ~~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~  223 (496)
                      .....+++....+.... ...        ..+..+++..+++..++|+++|++.|++.+..+..|.+.+.+|++|++|++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~~~~~~~~g~~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~  255 (487)
T PLN02676        176 LEMVIDYYNYDYEFAEPPRVTSLKNTEPNPTFVDFGEDEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVRE  255 (487)
T ss_pred             HHHHHHHHhccceeccCccccchhhcCcccccccCCCceEEeecCCCHHHHHHHHHhhcccccccccCCCceecCCEeeE
Confidence            33333333322211110 001        122234444555555689999999999987542111122468999999999


Q ss_pred             EEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCCCCceE
Q 010995          224 LQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFF  303 (496)
Q Consensus       224 I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~~~~~~  303 (496)
                      |..++++|+|++.+|++++||+||+|+|+.+|++..|.|.|+||+.+++++++++++.+.||++.|+++||+++....++
T Consensus       256 I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~  335 (487)
T PLN02676        256 ISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWPSGPGTEFF  335 (487)
T ss_pred             EEEcCCcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCCCCCCCceee
Confidence            99999999999999989999999999999999876689999999999999999999999999999999999875444555


Q ss_pred             EeecCCCCccccceeccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCCCCCCCCeeEecccCCCCCCC
Q 010995          304 IYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQR  383 (496)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~rw~~~~~~~  383 (496)
                      .+.+...+++.+|..++...++.+++++++.++.+..+..++++++++.++++|+++||..+++|..+..++|.++||++
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~~~g~~~~~p~~~~~~~W~~dp~s~  415 (487)
T PLN02676        336 LYAHERRGYYPFWQHLENEYPGSNVLFVTVTDEESRRIEQQPDSETKAEIMEVLRKMFGPNIPEATDILVPRWWSNRFFK  415 (487)
T ss_pred             eeeccccccchhhhhcccCCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCcceEEecccCCCCCCC
Confidence            55544444456665554445666788888888888889999999999999999999998777889999999999999999


Q ss_pred             cccCCCCCCCChHHHHHHhCCCCcEEEccccccCcCCccchHHHHHHHHHHHHHHHHHhccccccc
Q 010995          384 GSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNERNN  449 (496)
Q Consensus       384 g~~~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~~~~~~~~  449 (496)
                      |+|+.++||......+.+++|++||||||++++..++||||||+.||++||++|++.+...+++++
T Consensus       416 Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~~~~~~~~  481 (487)
T PLN02676        416 GSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIKKKKCRKN  481 (487)
T ss_pred             cccCCCCCCCChhHHHHHhCCCCceEEeccccccccccchHHHHHHHHHHHHHHHHHhccCccccc
Confidence            999999999987788899999999999999999888999999999999999999999999888766

>PLN02268 probable polyamine oxidase

Probab=100.00  E-value=9.2e-51  Score=411.30  Aligned_cols=413  Identities=29%  Similarity=0.493  Sum_probs=291.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCccc
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTC   86 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~~   86 (496)
                      .+|+|||||+|||+||+.|.++|+ +|+||||++|+|||++|.+..|+.+|+|++|+++.  ..++++.+|++++|++..
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~-~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~--~~~~~~~~l~~~lgl~~~   77 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASF-KVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGV--CNENPLAPLIGRLGLPLY   77 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCCCCCceeeecCcCCcccCCCCeeEecc--CCCchHHHHHHHhCCceE
Confidence            479999999999999999999999 79999999999999999888889999999999861  135678999999999754


Q ss_pred             cccCCC--------cceEEEcCCCcccChhHHHHHHH---HHHHHHHHHhccccccchhHHHHHHhhhcC-CC-CCCChH
Q 010995           87 FSDYTN--------ARYNIYDRSGKIIPSGVAADSYK---KAVESAIANLKNLEATNSNIGEVIKAATEL-PS-SPKTPL  153 (496)
Q Consensus        87 ~~~~~~--------~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~  153 (496)
                      ......        ..+.++..++..+|.........   .+.+..... ........++.+++...... +. ......
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  156 (435)
T PLN02268         78 RTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGETFERILEETEKV-RDEHEEDMSLLQAISIVLERHPELRLEGLA  156 (435)
T ss_pred             eccCCccccccccccccceecCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HhccCCCcCHHHHHHHHhhhCcccccchHH
Confidence            422111        01112223333444433322211   111111111 00111223445554432110 00 011122


Q ss_pred             HHHHHHHHhhcc---ccccCCccc--cc---ccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEE
Q 010995          154 ELAIDFILHDFE---MAEVEPIST--YV---DFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQ  225 (496)
Q Consensus       154 ~~~~~~~~~~~~---~~~~~~~~~--~~---~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~  225 (496)
                      +..++++.....   ..+.+.++.  +.   .+.+...  ...+|++.++++|++.           .+|++|++|++|.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~g~~~--~~~~G~~~l~~~l~~~-----------~~i~~~~~V~~i~  223 (435)
T PLN02268        157 HEVLQWYLCRMEGWFAADADTISLKSWDQEELLEGGHG--LMVRGYDPVINTLAKG-----------LDIRLNHRVTKIV  223 (435)
T ss_pred             HHHHHHHHHHHHHHhCCChHhCchhhcCCccccCCCce--eecCCHHHHHHHHhcc-----------CceeCCCeeEEEE
Confidence            233333321111   000001110  00   0111111  2467999999998664           4699999999999


Q ss_pred             EcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCCCCceEEe
Q 010995          226 HSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIY  305 (496)
Q Consensus       226 ~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~~~~~~~~  305 (496)
                      ..+++|+|++.+|+++.||+||+|+|+.++++..+.|.|+||+.+.+++++++++...|+++.|+++||++.   .++..
T Consensus       224 ~~~~~v~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~~---~~~g~  300 (435)
T PLN02268        224 RRYNGVKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPNV---EFLGV  300 (435)
T ss_pred             EcCCcEEEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCCC---ceeec
Confidence            999999999988888999999999999999875678999999999999999999999999999999999763   22221


Q ss_pred             ecCCCCccccceeccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCCCCCCCCeeEecccCCCCCCCcc
Q 010995          306 AHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGS  385 (496)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~rw~~~~~~~g~  385 (496)
                      ..+.......+.... ..++..++++++.+..+..+..++++++++.++++|.++|+. ...|..+.+++|.++||+.|+
T Consensus       301 ~~~~~~~~~~~~~~~-~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~-~~~p~~~~~~~W~~dp~~~G~  378 (435)
T PLN02268        301 VAPTSYGCSYFLNLH-KATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPD-ATEPVQYLVSRWGSDPNSLGC  378 (435)
T ss_pred             cCCCCCCceEEEecc-cCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCC-CCCccEEEecccCCCCCCCcc
Confidence            111111111222221 224667888888888888899999999999999999999963 457889999999999999999


Q ss_pred             cCCCCCCCChHHHHHHhCCCCcEEEccccccCcCCccchHHHHHHHHHHHHHHHHH
Q 010995          386 YSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKI  441 (496)
Q Consensus       386 ~~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l  441 (496)
                      |+++.||......+.+++|++|||||||+++..++|+||||+.||++||++|++.+
T Consensus       379 ~~~~~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l  434 (435)
T PLN02268        379 YSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRL  434 (435)
T ss_pred             CCCCCCCCCHHHHHHHhCCCCCeEEeeccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence            99999998777888999999999999999999889999999999999999998764

>PLN02568 polyamine oxidase

Probab=100.00  E-value=4e-50  Score=408.94  Aligned_cols=424  Identities=22%  Similarity=0.426  Sum_probs=302.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC-----CCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHH
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENG-----IEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELAS   79 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G-----~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~   79 (496)
                      +++||+|||||+|||+||++|++.|     + +|+|||+++++|||++|.+..|+.+|.|+++++++   ..+++++|++
T Consensus         4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~-~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~g~---~~~~~~~l~~   79 (539)
T PLN02568          4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMF-ELTVVEGGDRIGGRINTSEFGGERIEMGATWIHGI---GGSPVYKIAQ   79 (539)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcccccCCc-eEEEEeCCCCcCCeEEEEEeCCeEEecCCceeCCC---CCCHHHHHHH
Confidence            4689999999999999999999988     8 69999999999999999999999999999999983   4688999999


Q ss_pred             hcCCccccccCCC-----cceEEEcCCCcccChhHHH---HHHHHHHHHHHHHh-----------ccc----c-c----c
Q 010995           80 KSGLRTCFSDYTN-----ARYNIYDRSGKIIPSGVAA---DSYKKAVESAIANL-----------KNL----E-A----T  131 (496)
Q Consensus        80 ~lgl~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~-----------~~~----~-~----~  131 (496)
                      ++|+.....++..     ....++..+|..++.....   ..+..+++......           ..+    . .    .
T Consensus        80 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  159 (539)
T PLN02568         80 EAGSLESDEPWECMDGFPDRPKTVAEGGFEVDPSIVESISTLFRGLMDDAQGKLIEPSEVDEVDFVKLAAKAARVCESGG  159 (539)
T ss_pred             HhCCccccCcceecccccccceEEccCCcCCCHHHHHHHHHHHHHHHHHhhcccccccccccccccccchhccchhccCC
Confidence            9999654322211     1234566778777644433   23333332221100           000    0 0    0


Q ss_pred             chhHHHHHHh----hhcCCCC-------CCChHHHHHHHHHh---hccc--cccCC---ccc-----ccccCCcceeeeC
Q 010995          132 NSNIGEVIKA----ATELPSS-------PKTPLELAIDFILH---DFEM--AEVEP---IST-----YVDFGEREFLVAD  187 (496)
Q Consensus       132 ~~~~~~~~~~----~~~~~~~-------~~~~~~~~~~~~~~---~~~~--~~~~~---~~~-----~~~~~~~~~~~~~  187 (496)
                      ..++.+++..    .......       ..++.+.+......   .++.  .....   ++.     +..+.+.  ....
T Consensus       160 ~~Sl~~fl~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g~--~~~i  237 (539)
T PLN02568        160 GGSVGSFLRRGLDAYWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPGE--EITI  237 (539)
T ss_pred             CCcHHHHHHHHHHHHHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCCC--eEEE
Confidence            0123333322    1100000       11222222222111   1110  11111   111     1111222  3456


Q ss_pred             cccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCC----cccC
Q 010995          188 ERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDL----ISFK  263 (496)
Q Consensus       188 ~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~l----i~~~  263 (496)
                      ++|++.|+++|++.+.        +.+|++|++|++|+.++++|+|++.+|+++.||+||+|+|+.+|++.+    +.|.
T Consensus       238 ~gG~~~Li~~La~~L~--------~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~  309 (539)
T PLN02568        238 AKGYLSVIEALASVLP--------PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFS  309 (539)
T ss_pred             CCcHHHHHHHHHhhCC--------CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceec
Confidence            8999999999999863        457999999999999999999999999889999999999999998632    4799


Q ss_pred             CCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCCC---Cce--EEeecCCC----Ccccccee----ccccCCCCcEEE
Q 010995          264 PPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPG---KEF--FIYAHERR----GYYTFWQH----MENAYPGSNILV  330 (496)
Q Consensus       264 p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~~---~~~--~~~~~~~~----~~~~~~~~----~~~~~~~~~vl~  330 (496)
                      |+||..+++++++++++.+.||++.|+++||....+   ..+  +++..++.    .....|..    +.....+.++|+
T Consensus       310 P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~  389 (539)
T PLN02568        310 PPLPDFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPIHKNSSVLL  389 (539)
T ss_pred             CCCCHHHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhccccccccCCCCCEEE
Confidence            999999999999999999999999999999864111   111  12221110    01112221    111223678999


Q ss_pred             EEeccccchhcccCCcHHHHHHHHHHHHHhcCCCC----------------------CCCCeeEecccCCCCCCCcccCC
Q 010995          331 VTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDI----------------------PNATDILVPRWWNNRFQRGSYSN  388 (496)
Q Consensus       331 ~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~~----------------------~~~~~~~~~rw~~~~~~~g~~~~  388 (496)
                      +++.++.|..++.++++++++.+++.|+++||...                      +.|..+.+++|.++||++|+|++
T Consensus       390 ~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs~  469 (539)
T PLN02568        390 SWFAGKEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYSY  469 (539)
T ss_pred             EEeccHHHHHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccCC
Confidence            99999999999999999999999999999997432                      35788999999999999999999


Q ss_pred             CCCCCChHHHHHHhCCCC-------------cEEEccccccCcCCccchHHHHHHHHHHHHHHHHHh
Q 010995          389 YPIISDNQLVNSIRAPVA-------------GIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIR  442 (496)
Q Consensus       389 ~~~g~~~~~~~~~~~p~~-------------~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~  442 (496)
                      .+||.....+..+++|++             +|||||++|+..|+++||||++||++||++|++.++
T Consensus       470 ~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~~  536 (539)
T PLN02568        470 VAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHYK  536 (539)
T ss_pred             CcCCCChhHHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHHhc
Confidence            999998778889999985             799999999999999999999999999999998764

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=100.00  E-value=2.7e-51  Score=387.45  Aligned_cols=438  Identities=29%  Similarity=0.493  Sum_probs=311.0

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcC-
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSG-   82 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lg-   82 (496)
                      ...++|||||||+|||+||.+|.++|..+|+|||+++|+|||++|..+.+..+|+|++|+++   ...++++++++++| 
T Consensus        19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG---~~gNpVY~la~~~g~   95 (498)
T KOG0685|consen   19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHG---EEGNPVYELAKEYGD   95 (498)
T ss_pred             cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCCeEeecceeecC---CCCChHHHHHHHhCc
Confidence            35678999999999999999999988779999999999999999999998899999999998   57899999999887 


Q ss_pred             Cccccc-cCCCcceEEEcCCCcccChhHHHHHHHHHHHHHHHHhc-cccccchhHHHHHHh----hhcCCCCC---CChH
Q 010995           83 LRTCFS-DYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLK-NLEATNSNIGEVIKA----ATELPSSP---KTPL  153 (496)
Q Consensus        83 l~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~---~~~~  153 (496)
                      +..... ............+|..++.........-.......... .......++..++..    .+..+..+   +...
T Consensus        96 ~~~~~~tg~~~~~~~~~~~~g~~V~~~~~~~~~~~~~~~~~~~r~~~~~~~~~SvG~~ln~~~~~~~~~~e~~~~~k~l~  175 (498)
T KOG0685|consen   96 LKLLEVTGPAYVDNFHTRSNGEVVPEELLDELNEITVTLSDKLREAEIAHDEGSVGEYLNSEFWDELRGPENPEIDKTLA  175 (498)
T ss_pred             cceeccCCccccceeEEEecCccCcHHHHHHHHHHHHhhhhhcccccccCccccHHHHHHHHHHHHhccccccchhhHHH
Confidence            222111 11111123355678877765544332211111100000 000111122222221    11111111   1122


Q ss_pred             HHHHHHHHhhcc-cc--------ccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEE
Q 010995          154 ELAIDFILHDFE-MA--------EVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVREL  224 (496)
Q Consensus       154 ~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I  224 (496)
                      ...+..+.+... ..        +...+..+...++.....+.+.|+..+++-|.+.+.+...-.-+-.+++++++|.+|
T Consensus       176 ~~~~~~~~k~e~~~~~~d~l~evs~~~~~ey~~~~ge~~~~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I  255 (498)
T KOG0685|consen  176 EEILNVYFKVECSITGADNLSEVSLRALLEYTECPGEELLIWNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENI  255 (498)
T ss_pred             HHHHHHHHHHheeeeccCchhhhhhhhccceeecCchhhheechhHHHHHHHHHhccCCCcchhcCchhhhcccccceee
Confidence            233333332211 11        122233344455544566778899999999988765432000023467777999999


Q ss_pred             EEcC-CceEEEeCCCcEEEcCEEEEecChHHHhcCCc-ccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCCCCce
Q 010995          225 QHSR-NGVTVKTEDGCVYEANYVILSASIGVLQSDLI-SFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEF  302 (496)
Q Consensus       225 ~~~~-~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li-~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~~~~~  302 (496)
                      ..++ +.|.|++.||+.+.||+||+|++.++|+...- .|.|+||..+.++|+++.++++.|+++.|+++||+.+...-.
T Consensus       256 ~~~~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~  335 (498)
T KOG0685|consen  256 NWKNTGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWPSDWNGIQ  335 (498)
T ss_pred             ccCCCCcEEEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHhccCCccceEEEEccCCCCCCCCceeE
Confidence            9876 66999999999999999999999999997322 489999999999999999999999999999999988432223


Q ss_pred             EEeecCC----CCccccce----eccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcC-CCCCCCCeeEe
Q 010995          303 FIYAHER----RGYYTFWQ----HMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFG-PDIPNATDILV  373 (496)
Q Consensus       303 ~~~~~~~----~~~~~~~~----~~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~-~~~~~~~~~~~  373 (496)
                      +.+.+++    +.....|.    .+......+.+|.+++.|..+..++.++|||+.+.++..|+++++ +.+|+|..+..
T Consensus       336 ~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~~~~vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl~n~~iP~p~kilR  415 (498)
T KOG0685|consen  336 LLWLDEDLEELRSTLDAWEEDIMGFQPVSWAPNVLLGWIAGREARHMETLSDEEVLEGLTKLLRKFLKNPEIPKPKKILR  415 (498)
T ss_pred             EEEecCcHHHHhhhhHHHHhhceEEEEcCcchhhhheeccCCcceehhhCCHHHHHHHHHHHHHHhcCCCCCCCchhhhh
Confidence            3444433    11111232    123333455899999999999999999999999999999999998 88999999999


Q ss_pred             cccCCCCCCCcccCCCCCCCChHHHHHHhCCC--------CcEEEccccccCcCCccchHHHHHHHHHHHHHHHHHhcc
Q 010995          374 PRWWNNRFQRGSYSNYPIISDNQLVNSIRAPV--------AGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKD  444 (496)
Q Consensus       374 ~rw~~~~~~~g~~~~~~~g~~~~~~~~~~~p~--------~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~~~  444 (496)
                      ++|.++||.+|+|++.++|+.......+..|+        +.|.|||++|+..++++++||++||.|.|+++++.+...
T Consensus       416 s~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~~~y~~~  494 (498)
T KOG0685|consen  416 SQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQILFAGEATHRTFYSTTHGAVLSGWREADRLLEHYESS  494 (498)
T ss_pred             hcccCCCccCceeeEeeccccccccchhhccCCccccCCCceEEEccccccccceehhhhhHHhhHHHHHHHHHHHHhh
Confidence            99999999999999999987654444444443        479999999999899999999999999999999977644

>PLN03000 amine oxidase

Probab=100.00  E-value=1.8e-50  Score=418.36  Aligned_cols=417  Identities=23%  Similarity=0.467  Sum_probs=302.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeC----CcEEeecceEEecCCCCCCChHHHHHHh
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFG----GVSVELGAGWIAGVGGKESNPVWELASK   80 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~----g~~~d~G~~~~~~~~~~~~~~~~~l~~~   80 (496)
                      ...+|+|||||++||+||+.|++.|+ +|+|+|+++++|||++|.+..    +..+|+|++|+++   ...+++..|+++
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~-~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g---~~~npl~~L~~q  258 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGF-KVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTG---TLGNPLGIIARQ  258 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCC-cEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeC---CCccHHHHHHHH
Confidence            46899999999999999999999999 699999999999999998865    4679999999998   355677888999


Q ss_pred             cCCccccccCCCcceEEEcCCCcccChhHH---HHHHHHHHHHHHH---HhccccccchhHHHHHHhhhcCCCCCC-ChH
Q 010995           81 SGLRTCFSDYTNARYNIYDRSGKIIPSGVA---ADSYKKAVESAIA---NLKNLEATNSNIGEVIKAATELPSSPK-TPL  153 (496)
Q Consensus        81 lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  153 (496)
                      +|++.....  . ...+|..+|+.++....   ...+....+....   ..... ....++.+.+..+........ ...
T Consensus       259 lgl~l~~~~--~-~~~ly~~~Gk~v~~~~~~~ve~~fn~lLd~~~~lr~l~~~~-~~D~SLg~aLe~~~~~~g~~~t~e~  334 (881)
T PLN03000        259 LGSSLYKVR--D-KCPLYRVDGKPVDPDVDLKVEVAFNQLLDKASKLRQLMGDV-SMDVSLGAALETFRQVSGNDVATEE  334 (881)
T ss_pred             cCCceeecC--C-CCeEEEeCCcCCchhhhhhHHHHHHHHHHHHHHHHHHhccc-CcCCcHHHHHHHHHHHHcccCCHHH
Confidence            999754321  1 23466778888764322   1223333322211   11111 111111221111000000011 111


Q ss_pred             HHHHHHHHhhccccccCCc---c-ccc------ccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEE
Q 010995          154 ELAIDFILHDFEMAEVEPI---S-TYV------DFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRE  223 (496)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~---~-~~~------~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~  223 (496)
                      ...+.|....++......+   + .++      .+++..  ...++|++.|+++|++.+           .|++|++|++
T Consensus       335 ~~Ll~w~lanLE~~~as~ls~LSl~~wdqd~~~e~~G~~--~~v~GG~~~LieaLa~~L-----------~I~Ln~~Vt~  401 (881)
T PLN03000        335 MGLFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGGDH--CFLPGGNGRLVQALAENV-----------PILYEKTVQT  401 (881)
T ss_pred             HHHHHHHHHHHhcccccCHHHHHHHHhhhcccccCCCce--EEeCCCHHHHHHHHHhhC-----------CcccCCcEEE
Confidence            1222333333332211111   1 000      112222  345799999999999883           3999999999


Q ss_pred             EEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCCC-Cce
Q 010995          224 LQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPG-KEF  302 (496)
Q Consensus       224 I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~~-~~~  302 (496)
                      |++.+++|+|++.+ +++.||+||+|+|+.++++..|.|.|+||+.+.++|++++++.+.||++.|+++||..... +++
T Consensus       402 I~~~~dgV~V~~~~-~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~~~FG~  480 (881)
T PLN03000        402 IRYGSNGVKVIAGN-QVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGH  480 (881)
T ss_pred             EEECCCeEEEEECC-cEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceeE
Confidence            99999999998765 4899999999999999996558999999999999999999999999999999999987422 223


Q ss_pred             EEeecCCCCccccceeccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCC---CCCCCCeeEecccCCC
Q 010995          303 FIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGP---DIPNATDILVPRWWNN  379 (496)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~---~~~~~~~~~~~rw~~~  379 (496)
                      +.......+.+..|.++. ...+..+|++++.++.+..++.++++++++.++++|+++|+.   ..++|..+.+++|.++
T Consensus       481 l~~~~~~rg~~~~f~s~s-p~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~D  559 (881)
T PLN03000        481 LTEDPNYRGEFFLFYSYA-PVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGD  559 (881)
T ss_pred             EecCCCCCceeEEEeCCC-CCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCC
Confidence            221112223222332221 113567888999999999999999999999999999999973   4568899999999999


Q ss_pred             CCCCcccCCCCCCCChHHHHHHhCCC--CcEEEccccccCcCCccchHHHHHHHHHHHHHHHHHhcc
Q 010995          380 RFQRGSYSNYPIISDNQLVNSIRAPV--AGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKD  444 (496)
Q Consensus       380 ~~~~g~~~~~~~g~~~~~~~~~~~p~--~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~~~  444 (496)
                      ||++|+|+++.||+....+..+.+|+  ++||||||+++..|+||||||++||++||++|++.+...
T Consensus       560 PysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l~~~  626 (881)
T PLN03000        560 PFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAKAR  626 (881)
T ss_pred             CCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHHhhhc
Confidence            99999999999999878889999996  689999999998899999999999999999999988743

>PLN02529 lysine-specific histone demethylase 1

Probab=100.00  E-value=1.9e-49  Score=410.59  Aligned_cols=417  Identities=24%  Similarity=0.454  Sum_probs=304.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeC--C--cEEeecceEEecCCCCCCChHHHHHHh
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFG--G--VSVELGAGWIAGVGGKESNPVWELASK   80 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~--g--~~~d~G~~~~~~~~~~~~~~~~~l~~~   80 (496)
                      ..++|+|||||++||+||..|+++|+ +|+|||+++++|||++|.+.+  |  ..+|+|++|+++   ...+++..++++
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~-~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g---~~~npl~~la~~  234 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGF-KVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITG---IHANPLGVLARQ  234 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCC-cEEEEecCccCcCceeeecccCCCCceEEecCCeeccc---cccchHHHHHHH
Confidence            46799999999999999999999999 699999999999999998875  3  379999999998   345668899999


Q ss_pred             cCCccccccCCCcceEEEcCCCcccChhHH---HHHHHHHHHHHHHHhccc--cccchhHHHHHHhhhcCCCC-CCChHH
Q 010995           81 SGLRTCFSDYTNARYNIYDRSGKIIPSGVA---ADSYKKAVESAIANLKNL--EATNSNIGEVIKAATELPSS-PKTPLE  154 (496)
Q Consensus        81 lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~  154 (496)
                      +|++....   .....++..+|..++....   ...+...++.........  .....++.++++........ ......
T Consensus       235 lgl~~~~~---~~~~~~~~~~G~~v~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~d~Sl~~~le~~~~~~~~~~t~~e~  311 (738)
T PLN02529        235 LSIPLHKV---RDNCPLYKPDGALVDKEIDSNIEFIFNKLLDKVTELRQIMGGFANDISLGSVLERLRQLYGVARSTEER  311 (738)
T ss_pred             hCCCcccc---CCCceEEeCCCcCcchhhhhhHHHHHHHHHHHHHHHHHhcccCccCCCHHHHHHHHHhhhccCCCHHHH
Confidence            99876543   2234577788887763322   223333333322211111  11223455555432111111 111223


Q ss_pred             HHHHHHHhhccccccCC---ccc--c-----cccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEE
Q 010995          155 LAIDFILHDFEMAEVEP---IST--Y-----VDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVREL  224 (496)
Q Consensus       155 ~~~~~~~~~~~~~~~~~---~~~--~-----~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I  224 (496)
                      ..++|....++......   ++.  +     ..+++.  ...+.+|++.|+++|++.         .  .|++|++|++|
T Consensus       312 ~ll~~~~~~le~a~~~~~s~LSl~~~~~~~~~e~~G~--~~~i~GG~~~Li~aLA~~---------L--~IrLnt~V~~I  378 (738)
T PLN02529        312 QLLDWHLANLEYANAGCLSDLSAAYWDQDDPYEMGGD--HCFLAGGNWRLINALCEG---------V--PIFYGKTVDTI  378 (738)
T ss_pred             HHHHHHHHHhceecCCChHHhhhhHhhhccccccCCc--eEEECCcHHHHHHHHHhc---------C--CEEcCCceeEE
Confidence            34455443333222111   111  0     011222  234579999999999876         2  49999999999


Q ss_pred             EEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCC-CCceE
Q 010995          225 QHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSP-GKEFF  303 (496)
Q Consensus       225 ~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~-~~~~~  303 (496)
                      .+++++|+|++. ++++.||+||+|+|++++++..+.|.|+||+.+.+++++++++++.||++.|+++||.... .++++
T Consensus       379 ~~~~dGVtV~t~-~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW~~~~~~fG~l  457 (738)
T PLN02529        379 KYGNDGVEVIAG-SQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFWGEELDTFGCL  457 (738)
T ss_pred             EEcCCeEEEEEC-CEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCccccCCCCceEEE
Confidence            999999999874 4589999999999999999655889999999999999999999999999999999997632 12222


Q ss_pred             EeecCCCCccccceeccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCC---CCCCCCeeEecccCCCC
Q 010995          304 IYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGP---DIPNATDILVPRWWNNR  380 (496)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~---~~~~~~~~~~~rw~~~~  380 (496)
                      .......+.+..|.... ..++.++|++++.++.+..+..++++++++.++++|+++|+.   ..++|..+.+++|.++|
T Consensus       458 ~~~~~~~g~~~~~~~~~-~~~ggpvLvafv~G~~A~~le~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP  536 (738)
T PLN02529        458 NESSNKRGEFFLFYGYH-TVSGGPALVALVAGEAAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDP  536 (738)
T ss_pred             eccCCCCceEEEEecCC-CCCCCCEEEEEECchhhHHHhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCcCC
Confidence            21122223222232221 224567888888888888899999999999999999999973   34678899999999999


Q ss_pred             CCCcccCCCCCCCChHHHHHHhCCC-CcEEEccccccCcCCccchHHHHHHHHHHHHHHHHHhc
Q 010995          381 FQRGSYSNYPIISDNQLVNSIRAPV-AGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRK  443 (496)
Q Consensus       381 ~~~g~~~~~~~g~~~~~~~~~~~p~-~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~~  443 (496)
                      |++|+|++..|+.....+..+.+|+ ++||||||+++..|+|+||||++||++||++|++.++.
T Consensus       537 ~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l~~  600 (738)
T PLN02529        537 LSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQYPATMHGAFLSGLREASRILHVARS  600 (738)
T ss_pred             CCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHHHhh
Confidence            9999999988887655567778885 89999999999989999999999999999999998864

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=100.00  E-value=3.3e-49  Score=410.04  Aligned_cols=420  Identities=23%  Similarity=0.462  Sum_probs=305.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCc----EEeecceEEecCCCCCCChHHHHHHh
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGV----SVELGAGWIAGVGGKESNPVWELASK   80 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~----~~d~G~~~~~~~~~~~~~~~~~l~~~   80 (496)
                      ...+|+|||||++||+||+.|++.|+ +|+|+|+++++|||+.+....|.    .+|+|++|+++.   ..+++..++++
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~-~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~---~~npl~~l~~~  312 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGF-KVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGI---NGNPLGVLARQ  312 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC-cEEEEeccccCCCcccccccCCCCcceeccCCceeecCC---CccHHHHHHHH
Confidence            46789999999999999999999999 69999999999999999887653    689999999982   45678899999


Q ss_pred             cCCccccccCCCcceEEEcCCCcccChhHH---HHHHHHHHHHHHHHhc----cccccchhHHHHHHhhhcCCCCCCChH
Q 010995           81 SGLRTCFSDYTNARYNIYDRSGKIIPSGVA---ADSYKKAVESAIANLK----NLEATNSNIGEVIKAATELPSSPKTPL  153 (496)
Q Consensus        81 lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (496)
                      +|++.....   ..+.++..+|..++....   ...+..+++...+...    .......++.+++..+........++.
T Consensus       313 lgl~~~~~~---~~~~~~~~dG~~~~~~~~~~v~~~f~~lL~~~~klr~~~~~~~~~~D~SLg~~le~~~~~~~~~~~~~  389 (808)
T PLN02328        313 LGLPLHKVR---DICPLYLPDGKAVDAEIDSKIEASFNKLLDRVCKLRQAMIEEVKSVDVNLGTALEAFRHVYKVAEDPQ  389 (808)
T ss_pred             cCCceEecC---CCceEEeCCCcCcchhhhhhHHHHHHHHHHHHHHHHHhhhhcccccCcCHHHHHHHHhhhhccCCCHH
Confidence            999755422   224466788887653322   2333333333211111    111122334444432111111122222


Q ss_pred             H-HHHHHHHhhccccccC---Ccc-ccc------ccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeE
Q 010995          154 E-LAIDFILHDFEMAEVE---PIS-TYV------DFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVR  222 (496)
Q Consensus       154 ~-~~~~~~~~~~~~~~~~---~~~-~~~------~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~  222 (496)
                      + ..++|....++.....   .++ ..+      .+++.  ....++|++.|+++|++.         .+  |++|++|+
T Consensus       390 e~~Ll~w~lanlE~~~gs~ls~LSl~~w~qd~~~e~~G~--~~~v~GG~~~Li~aLa~~---------L~--I~ln~~V~  456 (808)
T PLN02328        390 ERMLLNWHLANLEYANASLMSNLSMAYWDQDDPYEMGGD--HCFIPGGNDTFVRELAKD---------LP--IFYERTVE  456 (808)
T ss_pred             HHHHHHHHHHHHhccchhhHHHHHhhhhhccccccCCCe--EEEECCcHHHHHHHHHhh---------CC--cccCCeeE
Confidence            2 3344444333322111   111 000      11122  334579999999999988         33  99999999


Q ss_pred             EEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCCC-Cc
Q 010995          223 ELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPG-KE  301 (496)
Q Consensus       223 ~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~~-~~  301 (496)
                      +|.+.+++|.|. .+|+++.||+||+|+|++++++..|.|.|+||+.+.++|++++|+.+.||++.|+++||..... ++
T Consensus       457 ~I~~~~dgV~V~-~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~d~fG  535 (808)
T PLN02328        457 SIRYGVDGVIVY-AGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFWGGEIDTFG  535 (808)
T ss_pred             EEEEcCCeEEEE-eCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceE
Confidence            999999888884 4677899999999999999996558899999999999999999999999999999999986322 22


Q ss_pred             eEEeecCCCCccccceeccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCC---CCCCCCeeEecccCC
Q 010995          302 FFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGP---DIPNATDILVPRWWN  378 (496)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~---~~~~~~~~~~~rw~~  378 (496)
                      ++.......+.+..|.++. ...+..+|++++.++.+..+..++++++++.++++|+++|+.   ..++|..+.+++|.+
T Consensus       536 ~l~~d~s~rG~~~lf~s~s-~~~G~~vLvafv~G~~A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~  614 (808)
T PLN02328        536 HLTEDPSMRGEFFLFYSYS-SVSGGPLLIALVAGDAAVKFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGK  614 (808)
T ss_pred             EEeecCCCCceEEEEecCC-CCCCCcEEEEEecChhhHHHhcCCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCC
Confidence            2221112223222233222 124567889999898899999999999999999999999974   246789999999999


Q ss_pred             CCCCCcccCCCCCCCChHHHHHHhCCC--CcEEEccccccCcCCccchHHHHHHHHHHHHHHHHHhcccc
Q 010995          379 NRFQRGSYSNYPIISDNQLVNSIRAPV--AGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNE  446 (496)
Q Consensus       379 ~~~~~g~~~~~~~g~~~~~~~~~~~p~--~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~~~~~  446 (496)
                      +||++|+|+++.||+.....+.+.+|+  ++||||||+++..++||||||+.||++||++|++.+.....
T Consensus       615 DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~~~~~~~  684 (808)
T PLN02328        615 DCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAANILRVARRRSL  684 (808)
T ss_pred             CCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHHHhhccc
Confidence            999999999999998766788888986  69999999999888999999999999999999999876533

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.7e-48  Score=368.10  Aligned_cols=418  Identities=22%  Similarity=0.333  Sum_probs=290.0

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcC
Q 010995            3 STSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSG   82 (496)
Q Consensus         3 ~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lg   82 (496)
                      .++.+||||||||+|||+||+.|.++|+ +|+|||+++|+|||+.+.+..+...|.|++++.+    .++.+..+++++|
T Consensus         4 p~~~~~viivGaGlaGL~AA~eL~kaG~-~v~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p----~~~~~l~~~k~~g   78 (450)
T COG1231           4 PPKTADVIIVGAGLAGLSAAYELKKAGY-QVQILEARDRVGGRSLTARAGGEYTDLGGQYINP----THDALLAYAKEFG   78 (450)
T ss_pred             CCCCCcEEEECCchHHHHHHHHHhhcCc-EEEEEeccCCcCceeEEEeccceeeccCCcccCc----cchhhhhhHHhcC
Confidence            4678999999999999999999999999 6999999999999999998889999999999998    8999999999999


Q ss_pred             CccccccCCCcceEEE--cCCCcccChhHHHHHHHHHHHHHHHHh---ccccc---------cchhHHHH----HHhhhc
Q 010995           83 LRTCFSDYTNARYNIY--DRSGKIIPSGVAADSYKKAVESAIANL---KNLEA---------TNSNIGEV----IKAATE  144 (496)
Q Consensus        83 l~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---------~~~~~~~~----~~~~~~  144 (496)
                      ++.............+  .......-...................   ..+..         ....+..|    ...+..
T Consensus        79 v~~~~fi~~g~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~~~~~a~~~~~~~~~~t~~~~e~~~~~~~~W~~~~~~~~~~  158 (450)
T COG1231          79 VPLEPFIRDGDNVIGYVGSSKSTPKRSLTAAADVRGLVAELEAKARSAGELDPGLTPEDRELDLESLAAWKTSSLRGLSR  158 (450)
T ss_pred             CCCCceeccCcccccccccccccchhccchhhhhcchhhhhhhhhhcccccCcccCcchhhhhhHHHHhhhhcccccccc
Confidence            9866522211101011  011110000000000000000000000   00000         00012222    000000


Q ss_pred             -----CCCCCCChHHHH--HHHHHhhccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceee
Q 010995          145 -----LPSSPKTPLELA--IDFILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKL  217 (496)
Q Consensus       145 -----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~  217 (496)
                           ....+....+.+  .+.+.  ..  ..........+....-.....|||+.|.++++++         +|.+|++
T Consensus       159 ~~~a~~~~g~~~~~~~~~~~d~~~--~~--~~~~~~~~~~~e~~~~~~~~~GGmd~la~Afa~q---------l~~~I~~  225 (450)
T COG1231         159 DPGARVSPGPIEPGDVSLLHDALP--LR--SASVVDRGIGGEIRTQMLQRLGGMDQLAEAFAKQ---------LGTRILL  225 (450)
T ss_pred             CccceeccCCCCcccccchhhhhh--hh--hhhhccccccccccchhhccCccHHHHHHHHHHH---------hhceEEe
Confidence                 000000000000  00000  00  0000000111111111222239999999999999         5779999


Q ss_pred             CceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCC
Q 010995          218 NKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCS  297 (496)
Q Consensus       218 ~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~  297 (496)
                      +++|.+|.+.+++|+|++.+..++.+|+||+|+|+.++.+  |.|.|.+++.++++++.++|++.+|+.+.|++|||++.
T Consensus       226 ~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~q--I~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~  303 (450)
T COG1231         226 NEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIPLAILGQ--IDFAPLLPAEYKQAAKGVPYGSATKIGVAFSRPFWEEA  303 (450)
T ss_pred             cCceeeEEEcCCeEEEEeCCcceEEecEEEEecCHHHHhh--cccCCCCCHHHHHHhcCcCcchheeeeeecCchhhhhc
Confidence            9999999999999999998855999999999999999998  89999999999999999999999999999999999984


Q ss_pred             CCCceEEeecCCCCccccceeccccCCCCcEEEEEec-cccchhcccCCcHHHHHHHHHHHHHhcCCCCCCCCee-Eecc
Q 010995          298 PGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLT-NGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDI-LVPR  375 (496)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~-~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~-~~~r  375 (496)
                      ...+...+.+.. .....+.+. ....+..||+.+|. ++.+..|..+++++.++.++..|.++||....++.+. ...+
T Consensus       304 ~~l~G~~~tD~~-~~~i~~~s~-~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~~g~~a~~~f~~~~~~~  381 (450)
T COG1231         304 GILGGESLTDLG-LGFISYPSA-PFADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAKLFGDEAADPFDYGASVD  381 (450)
T ss_pred             ccCCceEeecCC-cceEecCcc-ccCCCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhhhCChhhccccccceeee
Confidence            212333444332 111122221 22356788888665 8889999999999999999999999999666666666 8999


Q ss_pred             cCCCCCCCcccCCCCCCCChHHHHHHhCCCCcEEEccccccCcCCccchHHHHHHHHHHHHHHHHHh
Q 010995          376 WWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIR  442 (496)
Q Consensus       376 w~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~  442 (496)
                      |.++|++.|++..+.||+..++.+.+..|.++|||||..+++.++||+|||++||.+||.+|...+.
T Consensus       382 W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~~l~  448 (450)
T COG1231         382 WSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFGGWLEGAIRSGQRAAAEIHALLS  448 (450)
T ss_pred             cccCCcCCccccccCCcccccccccccCCCCceEEeeecccccccchhHHHHHHHHHHHHHHHHhhc
Confidence            9999999998889999999999999999999999999444445899999999999999999988764

>PLN02976 amine oxidase

Probab=100.00  E-value=8.7e-47  Score=399.41  Aligned_cols=422  Identities=25%  Similarity=0.494  Sum_probs=300.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeee-CCcEEeecceEEecCCC-----CCCChHHHHH
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKF-GGVSVELGAGWIAGVGG-----KESNPVWELA   78 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~-~g~~~d~G~~~~~~~~~-----~~~~~~~~l~   78 (496)
                      ..++|+|||||++||+||+.|++.|+ +|+|||+++++||++++.+. .++.+|+|++++++...     ...+++..++
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~G~-~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~la  770 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQGF-SVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLIC  770 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHCCC-cEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHHH
Confidence            45799999999999999999999999 79999999999999999774 58899999999987311     0124445578


Q ss_pred             HhcCCccccccCCCcceEEEcCCCcccChhHHHH---HHHHHHHHHHHHhcc--ccccchhHHHHHHhhhc-----CCC-
Q 010995           79 SKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAAD---SYKKAVESAIANLKN--LEATNSNIGEVIKAATE-----LPS-  147 (496)
Q Consensus        79 ~~lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~~~-  147 (496)
                      +++|+..........  .+...+|..++......   .+..+++........  ......++.+++...+.     ... 
T Consensus       771 ~qlGl~l~~~~~~~~--~yd~~~G~~V~~e~~~~v~~~fn~lld~~~~~~~~~g~~a~d~SLgd~Le~~~~~~~~~~~~~  848 (1713)
T PLN02976        771 AQLGLELTVLNSDCP--LYDVVTGEKVPADLDEALEAEYNSLLDDMVLLVAQKGEHAMKMSLEDGLEYALKRRRMPRPGV  848 (1713)
T ss_pred             HhcCCccccccCCCc--eeEccCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCccCCCHHHHHHHHHhhhhcccccc
Confidence            899998654332221  12236788777554432   333333332211111  11111222222221000     000 


Q ss_pred             ---------------C------C-CCh------------HHHHHHHHHhhcccc---ccCCcc--------cccccCCcc
Q 010995          148 ---------------S------P-KTP------------LELAIDFILHDFEMA---EVEPIS--------TYVDFGERE  182 (496)
Q Consensus       148 ---------------~------~-~~~------------~~~~~~~~~~~~~~~---~~~~~~--------~~~~~~~~~  182 (496)
                                     .      . ...            ....+.|.....+..   ....++        .|..+++. 
T Consensus       849 ~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa~L~eVSl~~~~qd~~y~~fgG~-  927 (1713)
T PLN02976        849 DIDETELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAALLKEVSLPYWNQDDVYGGFGGA-  927 (1713)
T ss_pred             ccchhhcccchhhhhhhhhhcccccchhhhhHHHhhCHHHHHHHHHHHHhhcccccCCHHHhhhhhhhcccccccCCCc-
Confidence                           0      0 000            111222332222110   011111        01112222 


Q ss_pred             eeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEc----------CCceEEEeCCCcEEEcCEEEEecCh
Q 010995          183 FLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHS----------RNGVTVKTEDGCVYEANYVILSASI  252 (496)
Q Consensus       183 ~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~----------~~~v~V~~~~G~~~~ad~VI~A~p~  252 (496)
                       .+.+++|++.|+++|++.+           .|++|++|++|.+.          +++|.|+|.+|+++.||+||+|+|+
T Consensus       928 -~~rIkGGYqqLIeALAe~L-----------~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPL  995 (1713)
T PLN02976        928 -HCMIKGGYSNVVESLAEGL-----------DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPL  995 (1713)
T ss_pred             -eEEeCCCHHHHHHHHHhhC-----------CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCH
Confidence             2345899999999999873           39999999999984          3679999999989999999999999


Q ss_pred             HHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCCCCceEEeecC---CCCc-cccceeccccCCCCcE
Q 010995          253 GVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHE---RRGY-YTFWQHMENAYPGSNI  328 (496)
Q Consensus       253 ~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~v  328 (496)
                      .+|+...+.|.|+||..+.++|+.++++.+.||++.|+++||+...  .++....+   ..+. +.+|..  ....+.++
T Consensus       996 GVLKag~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~--d~FG~s~edtdlrG~~~~~wnl--r~psG~pV 1071 (1713)
T PLN02976        996 GCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSV--DYFGATAEETDLRGQCFMFWNV--KKTVGAPV 1071 (1713)
T ss_pred             HHhhhcccccCCcccHHHHHHHHhhccccceEEEEEeCCccccCCC--CccccccccCCCCceEEEeccC--CCCCCCCE
Confidence            9998655889999999999999999999999999999999998732  22211111   1221 223321  11245679


Q ss_pred             EEEEeccccchhcccCCcHHHHHHHHHHHHHhcCCC-CCCCCeeEecccCCCCCCCcccCCCCCCCChHHHHHHhCCCCc
Q 010995          329 LVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPD-IPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAG  407 (496)
Q Consensus       329 l~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~-~~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~  407 (496)
                      |++++.|..+..+..++++++++.+++.|.++||.. .++|..+.+++|.++||++|+|++.+||.....+..+.+|+++
T Consensus      1072 LVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAePVgg 1151 (1713)
T PLN02976       1072 LIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVEN 1151 (1713)
T ss_pred             EEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHhCCCCC
Confidence            999999888888999999999999999999999843 4789999999999999999999999999877788899999976


Q ss_pred             -EEEccccccCcCCccchHHHHHHHHHHHHHHHHHhcccc
Q 010995          408 -IFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNE  446 (496)
Q Consensus       408 -l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~~~~~  446 (496)
                       |||||++++..|+||||||+.||.+||++|+..+..+..
T Consensus      1152 RLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~~G~~ 1191 (1713)
T PLN02976       1152 CLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILNTGND 1191 (1713)
T ss_pred             cEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHHccCc
Confidence             999999999989999999999999999999999976544

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=4.6e-47  Score=379.11  Aligned_cols=416  Identities=30%  Similarity=0.542  Sum_probs=293.3

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCc-EEeecceEEecCCCCCCChHHHHHHhcC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGV-SVELGAGWIAGVGGKESNPVWELASKSG   82 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~-~~d~G~~~~~~~~~~~~~~~~~l~~~lg   82 (496)
                      .++++|||||||+|||+||++|.+.|+ +|+||||++|+|||++|.+..+. .+|+|+++++++   ..+++.-+.+++|
T Consensus        13 ~~~~~VIVIGAGiaGLsAArqL~~~G~-~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~---~~npl~~l~~qlg   88 (501)
T KOG0029|consen   13 GKKKKVIVIGAGLAGLSAARQLQDFGF-DVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGV---YNNPLALLSKQLG   88 (501)
T ss_pred             cCCCcEEEECCcHHHHHHHHHHHHcCC-ceEEEeccCCcCceeEEEecCCCCeeecCCceecCc---CccHHHHHHHHhC
Confidence            457899999999999999999999999 69999999999999999986654 599999999992   4458889999999


Q ss_pred             CccccccCCCcceEEEcCCCcccC---hhHHHHHHHHHHHHHHHHhc-------cccccch--------hHHHHHHhhhc
Q 010995           83 LRTCFSDYTNARYNIYDRSGKIIP---SGVAADSYKKAVESAIANLK-------NLEATNS--------NIGEVIKAATE  144 (496)
Q Consensus        83 l~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~-------~~~~~~~--------~~~~~~~~~~~  144 (496)
                      ++........   .++...+....   .......+..+.........       .......        ...+....   
T Consensus        89 l~~~~~~~~~---~l~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---  162 (501)
T KOG0029|consen   89 LELYKVRDTC---PLFNENGGESDKVFDDFVEQEFNRLLDDASNLEQRLDNEIIGISDDSFGEALEAFLSASRLMKT---  162 (501)
T ss_pred             cccceecccc---cccccCCcccccccccchhhhhHHHHHHHhhhhhhhhhcccccccccHHHHHHhHHHHHHHHHh---
Confidence            9876533222   23333332211   11111111222111111110       0000000        01111110   


Q ss_pred             CCCCC-CChHHHHHHHHHhhcccccc---CCcc-----cccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccce
Q 010995          145 LPSSP-KTPLELAIDFILHDFEMAEV---EPIS-----TYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRL  215 (496)
Q Consensus       145 ~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i  215 (496)
                      ..+.. .......+.|.....+....   +..+     ....++.........+|+..++..+++.           .+|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~~~v~~~la~~-----------l~I  231 (501)
T KOG0029|consen  163 LLELLLEGEADKVLQWHLVNLELTFIAHLENASARLWDQDELFGGGGIHLLMKGGYEPVVNSLAEG-----------LDI  231 (501)
T ss_pred             hHHHhhhhhhhHHHHHHHHHHHHHhhccHhHhhHHhhhhhhhcccccchhHhhCCccHHHhhcCCC-----------cce
Confidence            00000 00122233333332221110   0000     0011222211133468899998888764           579


Q ss_pred             eeCceeEEEEEcCCc-eEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCC
Q 010995          216 KLNKVVRELQHSRNG-VTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFW  294 (496)
Q Consensus       216 ~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w  294 (496)
                      +++++|.+|.+.+++ +.+++.++..+.+|+||+|+|+.+++...|.|.|+||..+.++|++++.+...||.+.|++.||
T Consensus       232 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~~~Kv~l~F~~~fW  311 (501)
T KOG0029|consen  232 HLNKRVRKIKYGDDGAVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGLVNKVILEFPRVFW  311 (501)
T ss_pred             eeceeeEEEEEecCCceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCceeEEEEEeccccC
Confidence            999999999998766 3445455555999999999999999988899999999999999999999999999999999999


Q ss_pred             CCCCCCceEEeecCCCCccc--cceeccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcC-CCCCCCCee
Q 010995          295 PCSPGKEFFIYAHERRGYYT--FWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFG-PDIPNATDI  371 (496)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~-~~~~~~~~~  371 (496)
                      ..  +..++...........  .+.++.+ ..+.++++..+.+..+..+..++++++++.++..|+++|+ ...++|.+.
T Consensus       312 ~~--~~d~fg~~~~~~~~~~~~~f~~~~~-~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~f~~~~~~~p~~~  388 (501)
T KOG0029|consen  312 DQ--DIDFFGIVPETSVLRGLFTFYDCKP-VAGHPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKVFGSEEVPDPLDA  388 (501)
T ss_pred             CC--CcCeEEEccccccccchhhhhhcCc-cCCCCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHHhccCcCCCccce
Confidence            74  3455544433222222  1222221 2345588888888888999999999999999999999998 467889999


Q ss_pred             EecccCCCCCCCcccCCCCCCCChHHHHHHhCCCCc-EEEccccccCcCCccchHHHHHHHHHHHHHHHHHhc
Q 010995          372 LVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAG-IFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRK  443 (496)
Q Consensus       372 ~~~rw~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~-l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~~  443 (496)
                      .+.+|..++++.|+|++..++.....+..+++|+.+ +||||++|+..|+++|+||+.||.++|..|+..+..
T Consensus       389 ~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~~  461 (501)
T KOG0029|consen  389 LVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLIE  461 (501)
T ss_pred             eeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhcccCCCchHHHHHhhHHHHHHHHHHHHh
Confidence            999999999999999999988877778999999987 999999999999999999999999999999999885

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=100.00  E-value=1.2e-40  Score=340.45  Aligned_cols=408  Identities=17%  Similarity=0.281  Sum_probs=277.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHC----CCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhc
Q 010995            6 RSPVIIIGAGVSGISAGKILAEN----GIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKS   81 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~----G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~l   81 (496)
                      ++||+|||||+|||+||++|+++    |+ +|+|||+++++|||++|.+.+|+.+|.|+|+++.    .++.++++++++
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~-~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~----~~~~~~~l~~~l   76 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPV-ELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLE----RKKSAPDLVKDL   76 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCC-cEEEEEcCCcCcceEEEEeeCCEEEecCcccccc----CChHHHHHHHHc
Confidence            57999999999999999999999    99 7999999999999999999999999999999998    778899999999


Q ss_pred             CCccccccCCCcceEEEcCCCcccC--hhHHHHH------HHHHHHHHHHHh-ccccccchhHHHHHHhhh---------
Q 010995           82 GLRTCFSDYTNARYNIYDRSGKIIP--SGVAADS------YKKAVESAIANL-KNLEATNSNIGEVIKAAT---------  143 (496)
Q Consensus        82 gl~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------  143 (496)
                      |++............++..+|+.++  .......      +...+......+ ........++.+|+....         
T Consensus        77 gl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~e~l~~~~g~~~~~~~~  156 (462)
T TIGR00562        77 GLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGKLRAGMDFIRPASPGKDESVEEFVRRRFGDEVVENLI  156 (462)
T ss_pred             CCCcccccCCCCceEEEECCCceecCCCChHHHhcCCCCCchhhHHhhhhhccCCCCCCCcCHHHHHHHhcCHHHHHHHH
Confidence            9976653211111223333366543  2211110      000011111111 111111234444443311         


Q ss_pred             -cCC--CCCCChHHHHHHHHHhhcccc-----c-------cC--C----cccccccCCcceeeeCcccHHHHHHHHHHhh
Q 010995          144 -ELP--SSPKTPLELAIDFILHDFEMA-----E-------VE--P----ISTYVDFGEREFLVADERGYAHLLYKMAEEF  202 (496)
Q Consensus       144 -~~~--~~~~~~~~~~~~~~~~~~~~~-----~-------~~--~----~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~  202 (496)
                       ++.  ....++.+++..+....+...     +       ..  .    ...+.. +....+..+++|++.|+++|++.+
T Consensus       157 ~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~gG~~~l~~~l~~~l  235 (462)
T TIGR00562       157 EPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAK-KQGQDFQTLATGLETLPEEIEKRL  235 (462)
T ss_pred             HHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCcccccccccc-ccCCceEecchhHHHHHHHHHHHh
Confidence             110  112344555554432211000     0       00  0    001111 111224567899999999999986


Q ss_pred             ccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcce
Q 010995          203 LSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVY  282 (496)
Q Consensus       203 ~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~  282 (496)
                      .        .++|++|++|++|+.++++|+|++.+|++++||+||+|+|++.+..    +.|+++....+++.++++.++
T Consensus       236 ~--------~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~----ll~~~~~~~~~~l~~l~~~~~  303 (462)
T TIGR00562       236 K--------LTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKAAAG----LLSELSNSASSHLDKIHSPPV  303 (462)
T ss_pred             c--------cCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHHHHH----HhcccCHHHHHHHhcCCCCce
Confidence            2        2689999999999999999999988888899999999999999987    235677778889999999999


Q ss_pred             eEEEEEcCCCCCCCC-CCCceEEeecCCCC-ccccceec---cccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHH
Q 010995          283 TKIFLKFPCKFWPCS-PGKEFFIYAHERRG-YYTFWQHM---ENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVL  357 (496)
Q Consensus       283 ~~v~l~~~~~~w~~~-~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L  357 (496)
                      .+|++.|++++|... .+++++...++... ...+|.+.   ...+++..++++++.+..+..+.+++++|+++.++++|
T Consensus       304 ~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L  383 (462)
T TIGR00562       304 ANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVLRDL  383 (462)
T ss_pred             EEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHH
Confidence            999999998888653 23333332222111 12223211   11234556777777666667788899999999999999


Q ss_pred             HHhcCCCCCCCCeeEecccCCCCCCCcccCCCCCCCChHHHHH----HhCCCCcEEEccccccCcCCccchHHHHHHHHH
Q 010995          358 QDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNS----IRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDT  433 (496)
Q Consensus       358 ~~~~~~~~~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~----~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~a  433 (496)
                      .++++... +|....++||..      +++.+.+|+. ...+.    +..+.++||+||+|+..   .++++|+.||.++
T Consensus       384 ~~~~gi~~-~p~~~~v~rw~~------a~P~~~~g~~-~~~~~i~~~l~~~~~~l~l~G~~~~g---~~i~~~i~sg~~~  452 (462)
T TIGR00562       384 KKVLNINN-EPEMLCVTRWHR------AIPQYHVGHD-QRLKEARELLESAYPGVFLTGNSFEG---VGIPDCIDQGKAA  452 (462)
T ss_pred             HHHhCCCC-CCcEEEEeEccc------cCCCCCCChH-HHHHHHHHHHHhhCCCEEEeccccCC---CcHHHHHHHHHHH
Confidence            99998543 488889999976      8998899873 43333    44556799999999864   4899999999999


Q ss_pred             HHHHHHHHh
Q 010995          434 GKAVVEKIR  442 (496)
Q Consensus       434 A~~il~~l~  442 (496)
                      |++|++.+.
T Consensus       453 a~~~~~~~~  461 (462)
T TIGR00562       453 ASDVLTFLF  461 (462)
T ss_pred             HHHHHHhhc
Confidence            999988763

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=100.00  E-value=3.1e-40  Score=336.87  Aligned_cols=406  Identities=14%  Similarity=0.217  Sum_probs=262.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHC------CCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHH
Q 010995            6 RSPVIIIGAGVSGISAGKILAEN------GIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELAS   79 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~------G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~   79 (496)
                      +++|+|||||+|||+||++|+++      |. +|+||||++|+|||++|.+.+|+.+|.|+|+++.    .++.+++|++
T Consensus         1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~-~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~----~~~~~~~l~~   75 (463)
T PRK12416          1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDL-NLILVEKEEYLGGKIHSVEEKDFIMESGADSIVA----RNEHVMPLVK   75 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhccCCCc-cEEEEecCCCccceEEEEeeCCEEEecCcHHHhc----CCHHHHHHHH
Confidence            35799999999999999999986      37 6999999999999999999999999999999987    7788999999


Q ss_pred             hcCCccccccCCCcceEEEcCCCccc--ChhH-------HHHHHH-------HHHHHHHHHhccc--cccchhHHHHHHh
Q 010995           80 KSGLRTCFSDYTNARYNIYDRSGKII--PSGV-------AADSYK-------KAVESAIANLKNL--EATNSNIGEVIKA  141 (496)
Q Consensus        80 ~lgl~~~~~~~~~~~~~~~~~~g~~~--~~~~-------~~~~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~  141 (496)
                      +||++............++. +|...  |...       ....+.       ..+..........  .....++.+|+..
T Consensus        76 ~lgl~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~  154 (463)
T PRK12416         76 DLNLEEEMVYNETGISYIYS-DNTLHPIPSDTIFGIPMSVESLFSSTLVSTKGKIVALKDFITKNKEFTKDTSLALFLES  154 (463)
T ss_pred             HcCCccceecCCCCceEEEE-CCeEEECCCCCeecCCCChHHhhcCCcCCHHHHHHhhhhhccCCCCCCCCCCHHHHHHH
Confidence            99998665322221222332 33322  1110       011110       0111111111110  0112334455443


Q ss_pred             hh----------cC--CCCCCChHHHHHHHHHhhc---c--ccccC-Cc---ccccccCCcceeeeCcccHHHHHHHHHH
Q 010995          142 AT----------EL--PSSPKTPLELAIDFILHDF---E--MAEVE-PI---STYVDFGEREFLVADERGYAHLLYKMAE  200 (496)
Q Consensus       142 ~~----------~~--~~~~~~~~~~~~~~~~~~~---~--~~~~~-~~---~~~~~~~~~~~~~~~~~G~~~l~~~l~~  200 (496)
                      ..          ++  .....++.+++.......+   +  ..+.. .+   ...........+..+++|++.|+++|++
T Consensus       155 ~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~  234 (463)
T PRK12416        155 FLGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIIDRLEE  234 (463)
T ss_pred             hcCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHHHHHHHHHH
Confidence            10          00  0011122222222111000   0  00000 00   0000001122345668999999999999


Q ss_pred             hhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCc
Q 010995          201 EFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVM  280 (496)
Q Consensus       201 ~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~  280 (496)
                      .+.        +++|++|++|++|+.+++++.|++.+|+++.||+||+|+|+..+.+  +.+.|+++    +.+..+.+.
T Consensus       235 ~l~--------~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~~~~~~--ll~~~~l~----~~~~~~~~~  300 (463)
T PRK12416        235 VLT--------ETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPHDIAET--LLQSNELN----EQFHTFKNS  300 (463)
T ss_pred             hcc--------cccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCHHHHHh--hcCCcchh----HHHhcCCCC
Confidence            863        2589999999999999989999888888899999999999999987  43555543    345778889


Q ss_pred             ceeEEEEEcCCCCCCCC-CCCceEEeecCCCCcc-cccee--ccccCCCCcEEEEEec---cccchhcccCCcHHHHHHH
Q 010995          281 VYTKIFLKFPCKFWPCS-PGKEFFIYAHERRGYY-TFWQH--MENAYPGSNILVVTLT---NGESKRVEAQPDEETLKEA  353 (496)
Q Consensus       281 ~~~~v~l~~~~~~w~~~-~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~vl~~~~~---~~~a~~~~~~~~ee~~~~~  353 (496)
                      ++.+|++.|++++|... .+++++....+..... ..|.+  +....++..+++..+.   +..+..+..++++|+.+.+
T Consensus       301 ~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~~  380 (463)
T PRK12416        301 SLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEELVRVA  380 (463)
T ss_pred             ceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCHHHHHHHH
Confidence            99999999998766432 2345554433222111 12221  1122345566666554   3456678889999999999


Q ss_pred             HHHHHHhcCCCCCCCCeeEecccCCCCCCCcccCCCCCCCChH---HHHHHhCCCCcEEEccccccCcCCccchHHHHHH
Q 010995          354 MEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQ---LVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAG  430 (496)
Q Consensus       354 ~~~L~~~~~~~~~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~---~~~~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG  430 (496)
                      +++|+++||.. .+|....+++|.+      +++.+.+|+...   ..+.+..+.++||+||+++..   .+|++|+.||
T Consensus       381 ~~~L~~~lG~~-~~p~~~~v~~W~~------a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g---~~i~~ai~sg  450 (463)
T PRK12416        381 LYDIEKSLGIK-GEPEVVEVTNWKD------LMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYG---VGIGACIGNG  450 (463)
T ss_pred             HHHHHHHhCCC-CCceEEEEEEccc------cCCCcCcCHHHHHHHHHHHHHhhCCCeEEecccccc---ccHHHHHHHH
Confidence            99999999854 4688899999976      777777776321   223455667899999999875   4799999999


Q ss_pred             HHHHHHHHHHH
Q 010995          431 IDTGKAVVEKI  441 (496)
Q Consensus       431 ~~aA~~il~~l  441 (496)
                      .+||++|++.+
T Consensus       451 ~~aA~~i~~~~  461 (463)
T PRK12416        451 KNTANEIIATL  461 (463)
T ss_pred             HHHHHHHHHHh
Confidence            99999999764

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=100.00  E-value=5.6e-39  Score=327.69  Aligned_cols=402  Identities=19%  Similarity=0.266  Sum_probs=253.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCC--CCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCc
Q 010995            7 SPVIIIGAGVSGISAGKILAENG--IEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLR   84 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G--~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~   84 (496)
                      .+|+|||||+|||+||+.|+++|  + +|+|||+++++|||++|.+.+|+.+|.|+|+++.    .+++++++++++|+.
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~-~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~----~~~~~~~l~~~lgl~   75 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDA-DITLLEASDRLGGKIQTVRKDGFPIELGPESFLA----RKPSAPALVKELGLE   75 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCC-CEEEEEcCCCCcceEEEEeeCCeEEecChHHhcC----CcHHHHHHHHHcCCc
Confidence            36999999999999999999988  8 6999999999999999999999999999998887    677899999999997


Q ss_pred             cccccCCCcceEEEcCCCccc--Chh--------HHHHHHHHH---HHHHHHHhc-----cccccchhHHHHHHhhh---
Q 010995           85 TCFSDYTNARYNIYDRSGKII--PSG--------VAADSYKKA---VESAIANLK-----NLEATNSNIGEVIKAAT---  143 (496)
Q Consensus        85 ~~~~~~~~~~~~~~~~~g~~~--~~~--------~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~~~~~~~~---  143 (496)
                      ............++ .+|+..  |..        .........   .+.......     .......++.+|+....   
T Consensus        76 ~~~~~~~~~~~~~~-~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~l~~~~~~~  154 (451)
T PRK11883         76 DELVANTTGQSYIY-VNGKLHPIPPGTVMGIPTSIAPFLFAGLVSPIGKLRAAADLRPPRWKPGQDQSVGAFFRRRFGDE  154 (451)
T ss_pred             cceecCCCCcceEE-ECCeEEECCCCCeeccCCCchhhhcCCCCCHHHHHHhhCcccCCCCCCCCCcCHHHHHHHhccHH
Confidence            55422211111122 344432  211        000000000   000000000     00111223445553310   


Q ss_pred             -------cCC--CCCCChHHHHHHHHHhhccc-c-ccCCcc-cc-ccc-----CCcceeeeCcccHHHHHHHHHHhhccC
Q 010995          144 -------ELP--SSPKTPLELAIDFILHDFEM-A-EVEPIS-TY-VDF-----GEREFLVADERGYAHLLYKMAEEFLST  205 (496)
Q Consensus       144 -------~~~--~~~~~~~~~~~~~~~~~~~~-~-~~~~~~-~~-~~~-----~~~~~~~~~~~G~~~l~~~l~~~~~~~  205 (496)
                             ++.  ....++.+++..+....+.. . ....+. .. ...     .....+...++|++.++++|++.+.. 
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~-  233 (451)
T PRK11883        155 VVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIEALEEKLPA-  233 (451)
T ss_pred             HHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHHHHHHhCcC-
Confidence                   000  00112233322221110000 0 000000 00 000     01123446789999999999998642 


Q ss_pred             CCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEE
Q 010995          206 SDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKI  285 (496)
Q Consensus       206 ~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v  285 (496)
                             .+|++|++|++|+.++++|.|.+.+|++++||+||+|+|+..+.++  ...    +...++++.+++.++.+|
T Consensus       234 -------~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l--~~~----~~~~~~~~~~~~~~~~~v  300 (451)
T PRK11883        234 -------GTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLPSL--FVA----PPAFALFKTIPSTSVATV  300 (451)
T ss_pred             -------CeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHHHh--ccC----hhHHHHHhCCCCCceEEE
Confidence                   1799999999999998889888888889999999999999999883  222    234677889999999999


Q ss_pred             EEEcCCCCCCCCCCCceEEeecCCCCcccc-ceec--cccCCCCcEEEEEecc-ccchhcccCCcHHHHHHHHHHHHHhc
Q 010995          286 FLKFPCKFWPCSPGKEFFIYAHERRGYYTF-WQHM--ENAYPGSNILVVTLTN-GESKRVEAQPDEETLKEAMEVLQDMF  361 (496)
Q Consensus       286 ~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~vl~~~~~~-~~a~~~~~~~~ee~~~~~~~~L~~~~  361 (496)
                      ++.|+++++......+++...+++.....+ |.+.  ....+++..++..+.+ ........++++++++.++++|++++
T Consensus       301 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~  380 (451)
T PRK11883        301 ALAFPESATNLPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSKVM  380 (451)
T ss_pred             EEEeccccCCCCCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHHHHHh
Confidence            999998863222122333222222222222 3321  1122333444444443 33334567899999999999999999


Q ss_pred             CCCCCCCCeeEecccCCCCCCCcccCCCCCCCChHHHHHHhCC---CCcEEEccccccCcCCccchHHHHHHHHHHHHHH
Q 010995          362 GPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAP---VAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVV  438 (496)
Q Consensus       362 ~~~~~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~~~~p---~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il  438 (496)
                      |.. .++.+..+++|..      +|+.+.||+ ......++.+   ++||||||+|+..   +++++|+.||.++|++|+
T Consensus       381 g~~-~~~~~~~~~rw~~------a~p~~~~~~-~~~~~~l~~~l~~~~~l~~aG~~~~g---~~i~~av~sg~~~a~~i~  449 (451)
T PRK11883        381 GIT-GDPEFTIVQRWKE------AMPQYGVGH-IERVAELRAGLPHYPGLYVAGASFEG---VGLPDCIAQAKRAAARLL  449 (451)
T ss_pred             CCC-CCceEEEEeecCc------cCCCCCccH-HHHHHHHHHhhhhCCCEEEECcccCC---ccHHHHHHHHHHHHHHHH
Confidence            854 4577889999976      788888887 3444444333   5699999999853   579999999999999997


Q ss_pred             H
Q 010995          439 E  439 (496)
Q Consensus       439 ~  439 (496)
                      +
T Consensus       450 ~  450 (451)
T PRK11883        450 A  450 (451)
T ss_pred             h
Confidence            5

>PLN02576 protoporphyrinogen oxidase

Probab=100.00  E-value=1.3e-38  Score=328.11  Aligned_cols=410  Identities=17%  Similarity=0.234  Sum_probs=263.9

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHC-CCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAEN-GIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSG   82 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~-G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lg   82 (496)
                      ..++||+|||||+|||+||++|+++ |+ +|+|||+++++|||++|.+.+|+.+|.|+|++..    .++.+..++++ |
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~-~v~vlEa~~rvGGr~~t~~~~g~~~d~G~~~~~~----~~~~~~~l~~~-g   83 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALASKHGV-NVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQP----SDPELTSAVDS-G   83 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHhcCC-CEEEEecCCCCCCceeEeccCCeEEecCCchhcc----CcHHHHHHHHc-C
Confidence            4578999999999999999999999 99 6999999999999999999999999999999987    66777777777 8


Q ss_pred             CccccccCCCcceEEEcCCCcccC--hhHHHHH----H--HHHHHHHHHHh---c-cccccchhHHHHHHhhh-------
Q 010995           83 LRTCFSDYTNARYNIYDRSGKIIP--SGVAADS----Y--KKAVESAIANL---K-NLEATNSNIGEVIKAAT-------  143 (496)
Q Consensus        83 l~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~----~--~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~-------  143 (496)
                      +.............++..+|+..+  .......    +  ...+.......   . .......++.+|+....       
T Consensus        84 l~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~g~~~~~~  163 (496)
T PLN02576         84 LRDDLVFPDPQAPRYVVWNGKLRPLPSNPIDLPTFDLLSAPGKIRAGLGAFGWKRPPPPGREESVGEFVRRHLGDEVFER  163 (496)
T ss_pred             ChhheecCCCCceEEEEECCEEEEcCCChHHhcCcCcCChhHHHHHhHHHhhccCCCCCCCCCcHHHHHHHhcCHHHHHH
Confidence            875542111111112224565543  2211110    0  00011110000   0 11112233445543310       


Q ss_pred             ---cCC--CCCCChHHHHHHHHHhhcccc-----c-----cCCc------------ccccccCCcceeeeCcccHHHHHH
Q 010995          144 ---ELP--SSPKTPLELAIDFILHDFEMA-----E-----VEPI------------STYVDFGEREFLVADERGYAHLLY  196 (496)
Q Consensus       144 ---~~~--~~~~~~~~~~~~~~~~~~~~~-----~-----~~~~------------~~~~~~~~~~~~~~~~~G~~~l~~  196 (496)
                         ++.  ....++.+++..+....+...     .     ....            .....-.....+..+++|++.|++
T Consensus       164 ~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~  243 (496)
T PLN02576        164 LIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQTLPD  243 (496)
T ss_pred             HHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEeccchHHHHHH
Confidence               110  112345555555433221100     0     0000            000000011234566899999999


Q ss_pred             HHHHhhccCCCCCccc-cceeeCceeEEEEEcCCc-eEEEe--CCC-cEEEcCEEEEecChHHHhcCCcccCCCCcHHHH
Q 010995          197 KMAEEFLSTSDGKILD-NRLKLNKVVRELQHSRNG-VTVKT--EDG-CVYEANYVILSASIGVLQSDLISFKPPLPKWKT  271 (496)
Q Consensus       197 ~l~~~~~~~~~~~~~g-~~i~~~~~V~~I~~~~~~-v~V~~--~~G-~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~  271 (496)
                      +|++.+         + ++|++|++|++|++.+++ +.|++  .+| +++.||+||+|+|+..+... +   ++.++...
T Consensus       244 ~la~~l---------~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~l-l---~~~~~~~~  310 (496)
T PLN02576        244 ALAKRL---------GKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEM-L---RPKSPAAA  310 (496)
T ss_pred             HHHHhh---------CcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHHH-h---cccCHHHH
Confidence            999884         4 689999999999998876 65544  355 36999999999999999872 2   23445578


Q ss_pred             HHHhhCCCcceeEEEEEcCCCCCCCC-----C--CCceEEeecCCC-Ccccccee--cccc-CCCCcEEEEEeccccchh
Q 010995          272 EAIEKCDVMVYTKIFLKFPCKFWPCS-----P--GKEFFIYAHERR-GYYTFWQH--MENA-YPGSNILVVTLTNGESKR  340 (496)
Q Consensus       272 ~~i~~~~~~~~~~v~l~~~~~~w~~~-----~--~~~~~~~~~~~~-~~~~~~~~--~~~~-~~~~~vl~~~~~~~~a~~  340 (496)
                      +++..+++.++.+|++.|++++|..+     +  +++.+....+.. ....+|.+  +... +++..+++.++.+..+..
T Consensus       311 ~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~~~~~~~  390 (496)
T PLN02576        311 DALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRVLLLNYIGGSRNTG  390 (496)
T ss_pred             HHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCEEEEEEECCCCCcc
Confidence            88999999999999999999888651     1  112222111111 11122221  1112 223345556666666778


Q ss_pred             cccCCcHHHHHHHHHHHHHhcCCCC-CCCCeeEecccCCCCCCCcccCCCCCCCChHHHHHHhC---CC--CcEEEcccc
Q 010995          341 VEAQPDEETLKEAMEVLQDMFGPDI-PNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRA---PV--AGIFFTGEH  414 (496)
Q Consensus       341 ~~~~~~ee~~~~~~~~L~~~~~~~~-~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~~~~---p~--~~l~~aGd~  414 (496)
                      +..++++++++.++++|.+++|... +.+....+++|.+      +++.+.+|+. ...+.+++   +.  +|||+||||
T Consensus       391 ~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~------a~P~~~~g~~-~~~~~~~~~l~~~~~~~l~~aG~~  463 (496)
T PLN02576        391 IASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPK------AIPQYLLGHL-DVLEAAEKMEKDLGLPGLFLGGNY  463 (496)
T ss_pred             cccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCc------ccCCCCcCHH-HHHHHHHHHHHhcCCCCEEEeccc
Confidence            8889999999999999999998532 3566677899976      7888888874 33443333   23  699999999


Q ss_pred             ccCcCCccchHHHHHHHHHHHHHHHHHh
Q 010995          415 TSERFNGYVHGGYLAGIDTGKAVVEKIR  442 (496)
Q Consensus       415 ~~~~~~g~~egA~~SG~~aA~~il~~l~  442 (496)
                      +..   .++++|+.||.++|++|+..+.
T Consensus       464 ~~g---~~i~~ai~sg~~aA~~i~~~~~  488 (496)
T PLN02576        464 RGG---VALGKCVESGYEAADLVISYLE  488 (496)
T ss_pred             cCC---ccHHHHHHHHHHHHHHHHHHHh
Confidence            975   4899999999999999998865

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=100.00  E-value=3.2e-39  Score=328.56  Aligned_cols=401  Identities=26%  Similarity=0.363  Sum_probs=260.1

Q ss_pred             HHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeC--CcEEeecceEEecCCCCCCChHHHHHHhcCCcccc--ccCC
Q 010995           16 VSGISAGKILAENGIEDILILEASDRIGGRVRNEKFG--GVSVELGAGWIAGVGGKESNPVWELASKSGLRTCF--SDYT   91 (496)
Q Consensus        16 iaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~--g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~~~--~~~~   91 (496)
                      ||||+||++|+++|+ +|+||||++++|||++|.+.+  |+.+|.|+++++.    .+..+..++.++++....  ....
T Consensus         1 iaGL~aA~~L~~~G~-~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~   75 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGY-DVTVLEASDRVGGRIRTFRFDNPGFTFELGAHRFFG----MYPNLLNLIDELGLELSLETFPFP   75 (450)
T ss_dssp             HHHHHHHHHHHHTTT-EEEEEESSSSSBTTS-EEEETTTTEEEESSS-EEET----TSHHHHHHHHHHTHHTTEEEEEES
T ss_pred             ChHHHHHHHHHhCCC-CEEEEEcCCCCCcceEEecCCccceeecCCcccccc----cchhhHHHHHHhhhcccccccccc
Confidence            799999999999999 799999999999999999998  9999999999997    777799999999985322  1111


Q ss_pred             CcceEEEcCCCcc-c----ChhHHH--------------HHHHHHHHH---HHHHhccc-c----ccchhHHHHHHhhhc
Q 010995           92 NARYNIYDRSGKI-I----PSGVAA--------------DSYKKAVES---AIANLKNL-E----ATNSNIGEVIKAATE  144 (496)
Q Consensus        92 ~~~~~~~~~~g~~-~----~~~~~~--------------~~~~~~~~~---~~~~~~~~-~----~~~~~~~~~~~~~~~  144 (496)
                      .. ...+...+.. .    ......              ..+......   ........ +    .....+.++..... 
T Consensus        76 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  153 (450)
T PF01593_consen   76 QI-PFVYWPFGDGRPPWPPSQLPRNLNEFAALISLARFFRLLERLNKLRQMLDPFFNKAEPEFLEDDLESFLEFLDSQS-  153 (450)
T ss_dssp             SE-EEEEEEEEEEEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             cc-eeeeccccccccccccccccccccchhhhhhccccccccccccchhccchhhhhhhhhhhhhhhhhhhhhhhhhhh-
Confidence            11 1111111111 0    000000              000000000   00000000 0    00000111110000 


Q ss_pred             CCCCCCChH----HHHHHHHHhhcc--cccc-CC----cc----cccccCCcceeeeCcccHHHHHHHHHHhhccCCCCC
Q 010995          145 LPSSPKTPL----ELAIDFILHDFE--MAEV-EP----IS----TYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGK  209 (496)
Q Consensus       145 ~~~~~~~~~----~~~~~~~~~~~~--~~~~-~~----~~----~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~  209 (496)
                         ......    ............  .... ..    ..    ....... ..+....+++..+...+.+.        
T Consensus       154 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~--------  221 (450)
T PF01593_consen  154 ---FSEIFRESLFRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPF-GGLTVGMGGLSLALALAAEE--------  221 (450)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTS-STEEEETTTTHHHHHHHHHH--------
T ss_pred             ---hhhhhHHHHHHhhhhhhhccccchhhhhHHHhhhhhcccccccccccc-cceeecccchhHHHHHHHhh--------
Confidence               000000    000000000000  0000 00    00    0000111 11122245566666666655        


Q ss_pred             ccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEc
Q 010995          210 ILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKF  289 (496)
Q Consensus       210 ~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~  289 (496)
                       .|++|++|++|++|+.++++|+|.+.+|++++||+||+|+|+..+.+  +.+.|+++....++++.+++.+..+|++.|
T Consensus       222 -~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~--i~~~p~l~~~~~~a~~~~~~~~~~~v~l~~  298 (450)
T PF01593_consen  222 -LGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKN--ILLLPPLPEDKRRAIENLPYSSVSKVFLGF  298 (450)
T ss_dssp             -HGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHT--SEEESTSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             -cCceeecCCcceeccccccccccccccceEEecceeeecCchhhhhh--hhhcccccccccccccccccCcceeEEEee
Confidence             57799999999999999999999999999999999999999999996  668899998889999999999999999999


Q ss_pred             CCCCCCCCCCCceEEeecCCCCccccceecc-ccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCC-CCCC
Q 010995          290 PCKFWPCSPGKEFFIYAHERRGYYTFWQHME-NAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGP-DIPN  367 (496)
Q Consensus       290 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~-~~~~  367 (496)
                      +.++|.........++.+.......++.... ...++..++..++.++.+..+..++++++++.++++|+++++. ..++
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~~~~~~~~  378 (450)
T PF01593_consen  299 DRPFWPPDIDFFGILYSDGFSPIGYVSDPSKFPGRPGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLRKILPGASIPD  378 (450)
T ss_dssp             SSGGGGSTTTESEEEEESSTSSEEEEEEECCTTSCTTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHHHHHTTGGGGE
T ss_pred             ecccccccccccceecccCccccccccccccCcccccCCcceeeeeccccchhcccchhhhHHHHHHHhhhccccccccc
Confidence            9999988532222333333112112222111 1113567777777776667888999999999999999999974 4577


Q ss_pred             CCeeEecccCCCCCCCcccCCCCCCCChHHHHHHhCCC-CcEEEccccccCcCCccchHHHHHHHHHHHHHH
Q 010995          368 ATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPV-AGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVV  438 (496)
Q Consensus       368 ~~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~~~~p~-~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il  438 (496)
                      +.++.+++|.++++..++|+++.++.....++.+++|+ +||||||||+++.++|+++||+.||.+||++|+
T Consensus       379 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~aA~~il  450 (450)
T PF01593_consen  379 PIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGRRAAEEIL  450 (450)
T ss_dssp             ESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence            88899999999999999999888887556899999999 699999999998777899999999999999986

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK07233 hypothetical protein; Provisional

Probab=100.00  E-value=4.9e-38  Score=319.27  Aligned_cols=400  Identities=20%  Similarity=0.274  Sum_probs=254.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCcccc
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCF   87 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~~~   87 (496)
                      +|+|||||+|||+||+.|+++|+ +|+|||+++++||++.+.+.+|+.+|.|+|++..    .++++.++++++|+....
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~-~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~----~~~~~~~l~~~lg~~~~~   75 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGH-EVTVFEADDQLGGLAASFEFGGLPIERFYHHIFK----SDEALLELLDELGLEDKL   75 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEEeCCCCCCceeeeccCCcchhhhhhhhcc----ccHHHHHHHHHcCCCCce
Confidence            69999999999999999999999 6999999999999999999999999999999987    788999999999997554


Q ss_pred             ccCCCcceEEEcCCCcccChh-HH----------HHHHHHHHHHHHHHh-ccc-cccchhHHHHHHhhhcCCCCCCChHH
Q 010995           88 SDYTNARYNIYDRSGKIIPSG-VA----------ADSYKKAVESAIANL-KNL-EATNSNIGEVIKAATELPSSPKTPLE  154 (496)
Q Consensus        88 ~~~~~~~~~~~~~~g~~~~~~-~~----------~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (496)
                      ..... ...++ .+|...+.. ..          .+............. ... .....++.+|+....     .....+
T Consensus        76 ~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~-----~~~~~~  148 (434)
T PRK07233         76 RWRET-KTGYY-VDGKLYPLGTPLELLRFPHLSLIDKFRLGLLTLLARRIKDWRALDKVPAEEWLRRWS-----GEGVYE  148 (434)
T ss_pred             eeccC-ceEEE-ECCeEecCCCHHHHHcCCCCCHHHHHHhHHHHHhhhhcccccccccccHHHHHHHhc-----CHHHHH
Confidence            22221 12222 234333311 00          011110000000000 011 111234555554311     001111


Q ss_pred             HHHHHHHhhccccccCCccc------c-----cccC-CcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeE
Q 010995          155 LAIDFILHDFEMAEVEPIST------Y-----VDFG-EREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVR  222 (496)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~------~-----~~~~-~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~  222 (496)
                      ..++.+...........++.      +     .... ....+..+++|++.++++|.+.+.+      .|++|++|++|+
T Consensus       149 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~------~g~~v~~~~~V~  222 (434)
T PRK07233        149 VFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIEA------RGGEIRLGTPVT  222 (434)
T ss_pred             HHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCHHHHHHHHHHHHHh------cCceEEeCCCee
Confidence            11111111100000000000      0     0000 0112445689999999999999877      689999999999


Q ss_pred             EEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCCCCce
Q 010995          223 ELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEF  302 (496)
Q Consensus       223 ~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~~~~~  302 (496)
                      +|+.+++++++.+.++++++||+||+|+|+..+.+ ++   |.++....+.++.+.+.+..++++.|+++.+.     .+
T Consensus       223 ~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~~~~-ll---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~  293 (434)
T PRK07233        223 SVVIDGGGVTGVEVDGEEEDFDAVISTAPPPILAR-LV---PDLPADVLARLRRIDYQGVVCMVLKLRRPLTD-----YY  293 (434)
T ss_pred             EEEEcCCceEEEEeCCceEECCEEEECCCHHHHHh-hc---CCCcHHHHhhhcccCccceEEEEEEecCCCCC-----Cc
Confidence            99998888775556677899999999999999887 22   55666667788889999999999999987532     11


Q ss_pred             EEe-ecCCCCccccce--eccc--cCCCCcEEE-EEeccccchhcccCCcHHHHHHHHHHHHHhcC-CCCCCCCeeEecc
Q 010995          303 FIY-AHERRGYYTFWQ--HMEN--AYPGSNILV-VTLTNGESKRVEAQPDEETLKEAMEVLQDMFG-PDIPNATDILVPR  375 (496)
Q Consensus       303 ~~~-~~~~~~~~~~~~--~~~~--~~~~~~vl~-~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~-~~~~~~~~~~~~r  375 (496)
                      +.+ .++...+..++.  ....  .+++.+++. ..+.... ..+..++++++++.++++|.++++ ....++.+..+.|
T Consensus       294 ~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r  372 (434)
T PRK07233        294 WLNINDPGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGD-HPLWQMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISR  372 (434)
T ss_pred             eeeecCCCCCcceEEEecccCCccccCCceEEEEeeecCCC-ChhhcCCHHHHHHHHHHHHHHhCCCCChhheeeEEEEE
Confidence            111 111111111111  1111  124455443 2233222 234567899999999999999997 3223455666666


Q ss_pred             cCCCCCCCcccCCCCCCCChHHHHHHhCCCCcEEEccccccCcCCccchHHHHHHHHHHHHHHHHHh
Q 010995          376 WWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIR  442 (496)
Q Consensus       376 w~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~  442 (496)
                      |..      +++.+.||. ....+.+.+|++|||||||++...+.++|++|+.||.+||++|++.++
T Consensus       373 ~~~------a~~~~~~g~-~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~  432 (434)
T PRK07233        373 APY------AQPIYEPGY-LDKIPPYDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRR  432 (434)
T ss_pred             ecc------ccccccCch-hhcCCCcccCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhc
Confidence            643      555566774 456677788999999999965443445899999999999999998875

>PLN02612 phytoene desaturase

Probab=100.00  E-value=1.1e-37  Score=321.84  Aligned_cols=407  Identities=18%  Similarity=0.261  Sum_probs=252.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeee-eCCcEEeecceEEecCCCCCCChHHHHHHhcCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEK-FGGVSVELGAGWIAGVGGKESNPVWELASKSGL   83 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl   83 (496)
                      ...+|+|||||++||+||++|+++|+ +|+|+|+++++||++.|++ .+|+.+|.|+|++.+    .++++.++++++|+
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~-~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g----~~~~~~~ll~elG~  166 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLADAGH-KPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFG----AYPNVQNLFGELGI  166 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCC-eEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeC----CCchHHHHHHHhCC
Confidence            45789999999999999999999999 6999999999999999977 478999999999998    78899999999999


Q ss_pred             ccccccCCCcceEEEcC--CCcc--------cChhH--HHHHHHH-----HHHHH------H-HHhc---cc-cccchhH
Q 010995           84 RTCFSDYTNARYNIYDR--SGKI--------IPSGV--AADSYKK-----AVESA------I-ANLK---NL-EATNSNI  135 (496)
Q Consensus        84 ~~~~~~~~~~~~~~~~~--~g~~--------~~~~~--~~~~~~~-----~~~~~------~-~~~~---~~-~~~~~~~  135 (496)
                      ..... +......+...  .+..        .|...  ....+..     ..+..      . ....   .. .....++
T Consensus       167 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ls~~~kl~~~~~~~~~~~~~~~~~~~~d~~Sv  245 (567)
T PLN02612        167 NDRLQ-WKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLTWPEKIKFAIGLLPAIVGGQAYVEAQDGLSV  245 (567)
T ss_pred             cccce-ecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCccCCHHHHHHHHHhhhHHhcccchhhhhcCcCcH
Confidence            76542 21111111111  1111        11110  1111100     00100      0 0000   00 1112345


Q ss_pred             HHHHHhhhc-----------C--CCCCCChHHHHHHHHHhhccccccCCcccccccCCcceeeeCcccH-HHHHHHHHHh
Q 010995          136 GEVIKAATE-----------L--PSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGY-AHLLYKMAEE  201 (496)
Q Consensus       136 ~~~~~~~~~-----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~l~~~l~~~  201 (496)
                      .+|+.....           +  .....++.+.+..++...+.        .+........+....++. +.++++|++.
T Consensus       246 ~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~--------~~l~~~~gs~~~~~~G~~~~~l~~~l~~~  317 (567)
T PLN02612        246 KEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALN--------RFLQEKHGSKMAFLDGNPPERLCMPIVDH  317 (567)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHH--------HHHhccCCceEeeecCCchHHHHHHHHHH
Confidence            555553000           0  00011222222222221100        010001111222334444 6788999988


Q ss_pred             hccCCCCCccccceeeCceeEEEEEcCCc-e-EEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCC
Q 010995          202 FLSTSDGKILDNRLKLNKVVRELQHSRNG-V-TVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDV  279 (496)
Q Consensus       202 ~~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v-~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~  279 (496)
                      +.+      .|++|++|++|++|+.++++ + .|.+.+|++++||+||+|+|+..+.+ ++.. ...+....+.++.+.+
T Consensus       318 l~~------~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~-Ll~~-~~~~~~~~~~l~~l~~  389 (567)
T PLN02612        318 FQS------LGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKL-LLPD-QWKEIPYFKKLDKLVG  389 (567)
T ss_pred             HHh------cCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHH-hCcc-hhcCcHHHHHHHhcCC
Confidence            876      79999999999999986555 3 37777888899999999999999886 3321 1112234555677888


Q ss_pred             cceeEEEEEcCCCCCCCCCCCceEEeecCCCCcccccee----ccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHH
Q 010995          280 MVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQH----MENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAME  355 (496)
Q Consensus       280 ~~~~~v~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~  355 (496)
                      .++.+|+++|++++|...   ..+++..+... ...+..    .....++..++...+.  .+..|..++++|+++.+++
T Consensus       390 ~~v~~v~l~~dr~~~~~~---~~~~~~~~~~~-~~~~d~S~~~~~~~~~~~~ll~~~~~--~a~~~~~~sdeei~e~vl~  463 (567)
T PLN02612        390 VPVINVHIWFDRKLKNTY---DHLLFSRSPLL-SVYADMSTTCKEYYDPNKSMLELVFA--PAEEWISRSDEDIIDATMK  463 (567)
T ss_pred             CCeEEEEEEECcccCCCC---CceeecCCCCc-eeehhhhhcchhhcCCCCeEEEEEEE--cChhhhcCCHHHHHHHHHH
Confidence            899999999999988642   12233322111 111110    0111234444444433  5678999999999999999


Q ss_pred             HHHHhcCCCC-CCC--CeeEecccCCCCCCCcccCCCCCCCChHHHHHHhCCCCcEEEccccccCcCCccchHHHHHHHH
Q 010995          356 VLQDMFGPDI-PNA--TDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGID  432 (496)
Q Consensus       356 ~L~~~~~~~~-~~~--~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~  432 (496)
                      +|+++||..+ ++.  ..+...++...|++.  |. ..|+. ...++..++|++||||||||+...|+++||||+.||.+
T Consensus       464 ~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~--~~-~~pg~-~~~rp~~~tPi~~l~lAGd~t~~~~~~smeGAv~SG~~  539 (567)
T PLN02612        464 ELAKLFPDEISADQSKAKILKYHVVKTPRSV--YK-TVPNC-EPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKL  539 (567)
T ss_pred             HHHHHCCcccccccCCceEEEEEEeccCCce--EE-eCCCC-cccCccccCccCCEEEeecceeCCchhhHHHHHHHHHH
Confidence            9999997542 211  222333344444421  22 24444 23456778999999999999998889999999999999


Q ss_pred             HHHHHHHHHhc
Q 010995          433 TGKAVVEKIRK  443 (496)
Q Consensus       433 aA~~il~~l~~  443 (496)
                      ||++|++.++.
T Consensus       540 AA~~I~~~~~~  550 (567)
T PLN02612        540 CAQSIVQDYEL  550 (567)
T ss_pred             HHHHHHHHhcc
Confidence            99999999864

>TIGR02731 phytoene_desat phytoene desaturase

Probab=100.00  E-value=2.4e-37  Score=314.83  Aligned_cols=397  Identities=19%  Similarity=0.260  Sum_probs=251.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeee-eCCcEEeecceEEecCCCCCCChHHHHHHhcCCccc
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEK-FGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTC   86 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~~   86 (496)
                      +|+|||||++||+||++|+++|+ +|+|||+++++||++.|.+ .+|+.+|.|.|++..    .+++++++++++|+...
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~-~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~----~~~~~~~l~~~lg~~~~   75 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGH-TPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFG----AYPNMLQLLKELNIEDR   75 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCCCcceeECCCCCEEEcCcceecc----CCchHHHHHHHcCCccc
Confidence            59999999999999999999999 6999999999999999975 578999999999998    78899999999999754


Q ss_pred             cccCCCcceEEE--cCCCcc-------cChh--HHHHHHH--------HHHH---HHHHH-h---ccc-cccchhHHHHH
Q 010995           87 FSDYTNARYNIY--DRSGKI-------IPSG--VAADSYK--------KAVE---SAIAN-L---KNL-EATNSNIGEVI  139 (496)
Q Consensus        87 ~~~~~~~~~~~~--~~~g~~-------~~~~--~~~~~~~--------~~~~---~~~~~-~---~~~-~~~~~~~~~~~  139 (496)
                      ..... ....+.  ..++..       ++.+  .....+.        ....   ..... .   ... .....++.+|+
T Consensus        76 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l  154 (453)
T TIGR02731        76 LQWKS-HSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTWPEKIKFAIGLLPAIVRGQKYVEEQDKYTVTEWL  154 (453)
T ss_pred             eeecC-CceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCHHHHHHHHHHhHHHHhcCccchhhhccCCHHHHH
Confidence            42111 111111  111111       1111  1111110        0000   00000 0   000 01123345555


Q ss_pred             Hhh----------h-cC--CCCCCChHHHHHHHHHhhccccccCCcccccccCCcceeeeCccc-HHHHHHHHHHhhccC
Q 010995          140 KAA----------T-EL--PSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERG-YAHLLYKMAEEFLST  205 (496)
Q Consensus       140 ~~~----------~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~l~~~l~~~~~~~  205 (496)
                      ...          . ++  .....++.+.+..++...+... .     ....+.  ......++ ++.++++|.+.+.+ 
T Consensus       155 ~~~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~-~-----~~~~g~--~~~~~~g~~~~~l~~~l~~~l~~-  225 (453)
T TIGR02731       155 RKQGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRF-L-----QERHGS--KMAFLDGAPPERLCQPIVDYITS-  225 (453)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-H-----hcCCCC--eeEeecCCChHHHHHHHHHHHHh-
Confidence            430          0 00  0001233333333332211100 0     000111  11112232 56788888888866 


Q ss_pred             CCCCccccceeeCceeEEEEEcCCc-eE-EEeCCCc-----EEEcCEEEEecChHHHhcCCcccCCCCc-HHHHHHHhhC
Q 010995          206 SDGKILDNRLKLNKVVRELQHSRNG-VT-VKTEDGC-----VYEANYVILSASIGVLQSDLISFKPPLP-KWKTEAIEKC  277 (496)
Q Consensus       206 ~~~~~~g~~i~~~~~V~~I~~~~~~-v~-V~~~~G~-----~~~ad~VI~A~p~~~l~~~li~~~p~l~-~~~~~~i~~~  277 (496)
                           .|++|++|++|++|..++++ ++ |++.+|+     ++.||+||+|+|++.+.+ ++  .+..+ ....+.+..+
T Consensus       226 -----~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~-lL--~~~~~~~~~~~~~~~~  297 (453)
T TIGR02731       226 -----RGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKL-LL--PQPWKQMPFFQKLNGL  297 (453)
T ss_pred             -----cCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHh-hC--chhhhcCHHHHHhhcC
Confidence                 68999999999999875544 43 6665554     789999999999999876 32  21221 2345666778


Q ss_pred             CCcceeEEEEEcCCCCCCCCCCCceEEeecCCCCccccce----eccccCCCCcEEEEEeccccchhcccCCcHHHHHHH
Q 010995          278 DVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQ----HMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEA  353 (496)
Q Consensus       278 ~~~~~~~v~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~  353 (496)
                      .+.++.++++.|++++|...   .+ .+...... ...+.    .++...++. .++.++.+ .+..+..++++|+++.+
T Consensus       298 ~~~~~~~v~l~~~~~~~~~~---~~-~~~~~~~~-~~~~~~s~~~~~~~~~~~-~l~~~~~~-~~~~~~~~~~ee~~~~v  370 (453)
T TIGR02731       298 EGVPVINVHIWFDRKLTTVD---HL-LFSRSPLL-SVYADMSETCKEYADPDK-SMLELVFA-PAADWIGRSDEEIIDAT  370 (453)
T ss_pred             CCCcEEEEEEEEccccCCCC---ce-eeeCCCcc-eeecchhhhChhhcCCCC-eEEEEEec-ChhhhhcCCHHHHHHHH
Confidence            88899999999999987541   22 22222111 11111    011223444 44444433 34567889999999999


Q ss_pred             HHHHHHhcCCCC--CCCCeeEecccCCCCCCCcccCCCCCCCChHHHHHHhCCCCcEEEccccccCcCCccchHHHHHHH
Q 010995          354 MEVLQDMFGPDI--PNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGI  431 (496)
Q Consensus       354 ~~~L~~~~~~~~--~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~  431 (496)
                      +++|.++||...  ..+.++..++|.++||+.  | ...||. ..+.+.+++|++||||||+|++..|+|+||||+.||.
T Consensus       371 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~--~-~~~pg~-~~~~~~~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~  446 (453)
T TIGR02731       371 MAELAKLFPNHIKADSPAKILKYKVVKTPRSV--Y-KTTPGR-QQYRPHQKTPIPNFFLAGDYTKQKYLASMEGAVLSGK  446 (453)
T ss_pred             HHHHHHhCCcccCCCCCceEEEEEEEECCCce--e-ccCCCC-hhhCccccCccCCEEEeehhccCcccccHHHHHHHHH
Confidence            999999997432  246677788999999873  3 356785 5778889999999999999999989999999999999


Q ss_pred             HHHHHHH
Q 010995          432 DTGKAVV  438 (496)
Q Consensus       432 ~aA~~il  438 (496)
                      +||++|+
T Consensus       447 ~AA~~v~  453 (453)
T TIGR02731       447 LCAQAIV  453 (453)
T ss_pred             HHHHHhC
Confidence            9999873

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PLN02487 zeta-carotene desaturase

Probab=100.00  E-value=2e-35  Score=300.99  Aligned_cols=402  Identities=17%  Similarity=0.219  Sum_probs=256.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeee-eCCcEEeecceEEecCCCCCCChHHHHHHhcCCc
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEK-FGGVSVELGAGWIAGVGGKESNPVWELASKSGLR   84 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~   84 (496)
                      +.+|+|||||++||+||+.|+++|+ +|+|+|+++++||+++++. .+|..+|.|+|++.+    .+++++++++++|+.
T Consensus        75 ~~~v~iiG~G~~Gl~~a~~L~~~g~-~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~----~~~~~~~ll~~LGl~  149 (569)
T PLN02487         75 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFG----CYNNLFRLMKKVGAD  149 (569)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-eeEEEecCCCCCCceeeeeecCCcEEecceeEecC----CcHHHHHHHHhcCCc
Confidence            4599999999999999999999999 6999999999999999985 578999999999998    788999999999998


Q ss_pred             cccccCCCcceEEEcCCCcc------cChhHHHHHHHHH--------HHHHHH-----------Hh-------cccc-cc
Q 010995           85 TCFSDYTNARYNIYDRSGKI------IPSGVAADSYKKA--------VESAIA-----------NL-------KNLE-AT  131 (496)
Q Consensus        85 ~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~--------~~~~~~-----------~~-------~~~~-~~  131 (496)
                      .... +......++..+|..      ++.+.....+..+        .+.+..           ..       +.++ ..
T Consensus       150 ~~~~-~~~~~~~~~~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~Ls~~dklr~~~~l~~~~~~~al~~~~~~~~~~~~~d  228 (569)
T PLN02487        150 ENLL-VKDHTHTFVNKGGDVGELDFRFPVGAPLHGIKAFLTTNQLEPYDKARNALALATSPVVRALVDPDGAMRDIRDLD  228 (569)
T ss_pred             cccc-ccccceeEEecCCEEeeeccCCCCCchhhhHHHHHcCCCCCHHHHHhhcccccccchhhhccCcccccccccccc
Confidence            6642 222112123344433      2211110001111        011100           00       0000 11


Q ss_pred             chhHHHHHHhhhcC-------------CCCCCChHHHHHHHHHhhccccccCCcccccccCCcceeeeCcccHHH-HHHH
Q 010995          132 NSNIGEVIKAATEL-------------PSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYAH-LLYK  197 (496)
Q Consensus       132 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-l~~~  197 (496)
                      ..++.+|+.....-             .....++++.+..+....+        ..+........+.++++|+.. |++.
T Consensus       229 ~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl--------~~~~~~~~~~~l~~~~Gg~~~~l~~p  300 (569)
T PLN02487        229 DISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIF--------SLFATKTEASLLRMLKGSPDVRLSGP  300 (569)
T ss_pred             CCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH--------HHHhhcCCcceeeecCCCchHHHHHH
Confidence            23456666541100             0001122222222221111        111101111335567899985 9999


Q ss_pred             HHHhhccCCCCCccccceeeCceeEEEEEcC--Cc---eE-EEe---CCCcEEEcCEEEEecChHHHhcCCcccCCCCcH
Q 010995          198 MAEEFLSTSDGKILDNRLKLNKVVRELQHSR--NG---VT-VKT---EDGCVYEANYVILSASIGVLQSDLISFKPPLPK  268 (496)
Q Consensus       198 l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~--~~---v~-V~~---~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~  268 (496)
                      +++.|++      .|++|+++++|++|..++  ++   ++ |++   .+++++.+|+||+|+|+..+.+ ++   |....
T Consensus       301 l~~~L~~------~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~-Ll---p~~~~  370 (569)
T PLN02487        301 IAKYITD------RGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKR-LL---PEQWR  370 (569)
T ss_pred             HHHHHHH------cCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHH-hC---Cchhh
Confidence            9999988      799999999999999863  22   33 555   3445789999999999999987 33   33211


Q ss_pred             --HHHHHHhhCCCcceeEEEEEcCCCCCCCCC-----------CCceEEeecCCCCcccccee-----cccc--CCCCcE
Q 010995          269 --WKTEAIEKCDVMVYTKIFLKFPCKFWPCSP-----------GKEFFIYAHERRGYYTFWQH-----MENA--YPGSNI  328 (496)
Q Consensus       269 --~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~-----------~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~v  328 (496)
                        .....+.++...++..|+++|+++.-....           +...+.+..+ . .+.++..     ....  ..++..
T Consensus       371 ~~~~~~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~-~-~~~f~~di~l~~~~~~~~~~~g~~  448 (569)
T PLN02487        371 EYEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSAD-A-DFSCFADLALTSPEDYYKEGEGSL  448 (569)
T ss_pred             ccHHHhHHhcCCCeeEEEEEEEecccccccccccccccccccccccccccccC-C-CcceEeeeecCCHHHHcccCCceE
Confidence              236677888889999999999875422110           0010001111 0 1111111     1111  112355


Q ss_pred             EEEEeccccchhcccCCcHHHHHHHHHHHHHhcCCC-CCCCCeeEecccCCCCCCCcccCCCCCCCChHHHHHHhCCCCc
Q 010995          329 LVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPD-IPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAG  407 (496)
Q Consensus       329 l~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~-~~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~  407 (496)
                      +-.++.  .++.+..++++|+++.++++|.++++.. ..++.++.+.+..+      +.....||+ ...+|..++|++|
T Consensus       449 l~~vis--~a~~~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~------at~~~~pg~-~~~RP~~~T~~~n  519 (569)
T PLN02487        449 IQAVLT--PGDPYMPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQ------SLYREAPGM-DPFRPDQKTPISN  519 (569)
T ss_pred             EEEEEc--CCccccCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccC------ceeccCCCc-cccCCCCCCCCCC
Confidence            555555  4567889999999999999999999642 22355556666654      444567776 3566888999999


Q ss_pred             EEEccccccCcCCccchHHHHHHHHHHHHHHHHHh
Q 010995          408 IFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIR  442 (496)
Q Consensus       408 l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~  442 (496)
                      ||+||||+..+|+.+||||++||.+||+.|++..+
T Consensus       520 l~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~~  554 (569)
T PLN02487        520 FFLAGSYTKQDYIDSMEGATLSGRQAAAYICEAGE  554 (569)
T ss_pred             EEEeCcccccCCcchHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999988764

>PRK07208 hypothetical protein; Provisional

Probab=100.00  E-value=5.7e-35  Score=299.64  Aligned_cols=408  Identities=18%  Similarity=0.164  Sum_probs=256.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCc
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLR   84 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~   84 (496)
                      +++||+|||||+|||+||+.|+++|+ +|+|+|+++++||+++|...+|+.+|.|+|++..    .+..+.+++++++..
T Consensus         3 ~~~~vvIiGaGisGL~aA~~L~~~g~-~v~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~~----~~~~~~~l~~~l~~~   77 (479)
T PRK07208          3 NKKSVVIIGAGPAGLTAAYELLKRGY-PVTVLEADPVVGGISRTVTYKGNRFDIGGHRFFS----KSPEVMDLWNEILPD   77 (479)
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCCCceeeeeccCCceEccCCceecc----CCHHHHHHHHHhcCC
Confidence            57899999999999999999999999 6999999999999999999999999999999987    889999999999873


Q ss_pred             cccccCCCcceEEEcCCCcccC--hhHHHHH----HHHHHH---HHHHHhccccccchhHHHHHHhhh----------cC
Q 010995           85 TCFSDYTNARYNIYDRSGKIIP--SGVAADS----YKKAVE---SAIANLKNLEATNSNIGEVIKAAT----------EL  145 (496)
Q Consensus        85 ~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----------~~  145 (496)
                      ......... ..++ .+|...+  ......+    +.....   ..............++.+|+....          ++
T Consensus        78 ~~~~~~~~~-~~~~-~~g~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~l~~~~g~~~~~~~~~p~  155 (479)
T PRK07208         78 DDFLLRPRL-SRIY-YRGKFFDYPLKAFDALKNLGLWRTAKCGASYLKARLRPRKEEDSFEDWVINRFGRRLYSTFFKGY  155 (479)
T ss_pred             Ccccccccc-ceEE-ECCEEecCCcchhHHHHhCCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHhhCHHHHHHHHHHh
Confidence            333211111 1122 3455432  2111100    001111   111111111112234555554311          00


Q ss_pred             C--CCCCChHHHHHHHHHhhccccccC-Ccc-cccc-----------cC-CcceeeeCcccHHHHHHHHHHhhccCCCCC
Q 010995          146 P--SSPKTPLELAIDFILHDFEMAEVE-PIS-TYVD-----------FG-EREFLVADERGYAHLLYKMAEEFLSTSDGK  209 (496)
Q Consensus       146 ~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~-----------~~-~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~  209 (496)
                      .  ....++.+++..+........... .+. .+..           .. ....+.++++|++.|+++|.+.+.+     
T Consensus       156 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l~~-----  230 (479)
T PRK07208        156 TEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAEKLEA-----  230 (479)
T ss_pred             hhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHHHHHHH-----
Confidence            0  011123333333322111100000 000 0000           00 0123456789999999999999876     


Q ss_pred             ccccceeeCceeEEEEEcCCce-E-EEe--CCCc--EEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCccee
Q 010995          210 ILDNRLKLNKVVRELQHSRNGV-T-VKT--EDGC--VYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYT  283 (496)
Q Consensus       210 ~~g~~i~~~~~V~~I~~~~~~v-~-V~~--~~G~--~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~  283 (496)
                       .|++|++|++|++|..+++++ . +..  .+|+  ++.||+||+|+|+..+.+ ++  .|+++....++++.+++.+..
T Consensus       231 -~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~-~l--~~~~~~~~~~~~~~l~~~~~~  306 (479)
T PRK07208        231 -LGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVA-AL--DPPPPPEVRAAAAGLRYRDFI  306 (479)
T ss_pred             -cCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHH-hc--CCCCCHHHHHHHhCCCcceeE
Confidence             689999999999999987763 2 332  2453  589999999999999886 33  356777778888899999999


Q ss_pred             EEEEEcCCCCCCCCCCCceEEeecC-CCCc--cccceecc--ccCCCC-cEEEEEeccccchhcccCCcHHHHHHHHHHH
Q 010995          284 KIFLKFPCKFWPCSPGKEFFIYAHE-RRGY--YTFWQHME--NAYPGS-NILVVTLTNGESKRVEAQPDEETLKEAMEVL  357 (496)
Q Consensus       284 ~v~l~~~~~~w~~~~~~~~~~~~~~-~~~~--~~~~~~~~--~~~~~~-~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L  357 (496)
                      +|++.|+++.+...   .+ ++..+ ....  ...+..+.  ..+++. ..+...+..........++++|+++.++++|
T Consensus       307 ~v~l~~~~~~~~~~---~~-~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~~deel~~~~~~~L  382 (479)
T PRK07208        307 TVGLLVKELNLFPD---NW-IYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNMSDEDLIALAIQEL  382 (479)
T ss_pred             EEEEEecCCCCCCC---ce-EEecCCCCccceecccccCCcccCCCCCceEEEEEEEccCCCccccCCHHHHHHHHHHHH
Confidence            99999998754331   11 11111 1111  11111111  122333 2333223222233455789999999999999


Q ss_pred             HHhcCCCCCCCCeeEecccCCCCCCCcccCCCCCCCChHHHHH---HhCCCCcEEEccccccCcCCccchHHHHHHHHHH
Q 010995          358 QDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNS---IRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTG  434 (496)
Q Consensus       358 ~~~~~~~~~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~---~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA  434 (496)
                      .++......++.+..+.+|..      +++.+.+++. .....   +.++.+|||+||++... .+.+|++|+.||+++|
T Consensus       383 ~~l~~~~~~~~~~~~v~r~~~------a~P~y~~~~~-~~~~~~~~~~~~~~~l~laGr~~~~-~~~~~d~a~~sg~~~a  454 (479)
T PRK07208        383 ARLGLIRPADVEDGFVVRVPK------AYPVYDGTYE-RNVEIIRDLLDHFPNLHLVGRNGMH-RYNNQDHSMLTAMLAV  454 (479)
T ss_pred             HHcCCCChhheeEEEEEEecC------cccCCCchHH-HHHHHHHHHHHhcCCceeecccccc-ccCChhHHHHHHHHHH
Confidence            997323235577788888865      8888888873 33333   34677899999998765 3468999999999999


Q ss_pred             HHHHHH
Q 010995          435 KAVVEK  440 (496)
Q Consensus       435 ~~il~~  440 (496)
                      ++|++.
T Consensus       455 ~~i~~~  460 (479)
T PRK07208        455 ENIIAG  460 (479)
T ss_pred             HHHhcC
Confidence            998877

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=100.00  E-value=3.5e-35  Score=286.58  Aligned_cols=399  Identities=20%  Similarity=0.260  Sum_probs=269.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC--CCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCcc
Q 010995            8 PVIIIGAGVSGISAGKILAENG--IEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRT   85 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G--~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~   85 (496)
                      +|+|||||||||+|||+|++++  + +|+|||+++++||.++|...+|+.+|.|+|.|..    ....+.+++++||+++
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~-~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~----~~~~~l~li~eLGled   76 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDV-EVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLA----RKEEILDLIKELGLED   76 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCC-cEEEEecCCCCCceEEEEeeCCEEEeechhheec----chHHHHHHHHHhCcHH
Confidence            6999999999999999999999  8 6999999999999999999999999999999987    4588999999999998


Q ss_pred             ccccCCCcceEEEcCCCcccChhHHH------------HHHHHHHHHHHHHhccccccchhHHHHHHhhh----------
Q 010995           86 CFSDYTNARYNIYDRSGKIIPSGVAA------------DSYKKAVESAIANLKNLEATNSNIGEVIKAAT----------  143 (496)
Q Consensus        86 ~~~~~~~~~~~~~~~~g~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  143 (496)
                      ... +......+++.+|+++|.+...            .....++..+..........+.++.+|+....          
T Consensus        77 ~l~-~~~~~~~~i~~~gkl~p~P~~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~d~sv~~f~r~~fG~ev~~~~~~  155 (444)
T COG1232          77 KLL-WNSTARKYIYYDGKLHPIPTPTILGIPLLLLSSEAGLARALQEFIRPKSWEPKQDISVGEFIRRRFGEEVVERFIE  155 (444)
T ss_pred             hhc-cCCcccceEeeCCcEEECCccceeecCCccccchhHHHHHHHhhhcccCCCCCCCcCHHHHHHHHHhHHHHHHHHH
Confidence            874 2222233455677775522111            11112222222222222333334444443311          


Q ss_pred             cCC--CCCCChHHHHHHHHHhhcccccc---CCcccc-cc-c----CCcceeeeCcccHHHHHHHHHHhhccCCCCCccc
Q 010995          144 ELP--SSPKTPLELAIDFILHDFEMAEV---EPISTY-VD-F----GEREFLVADERGYAHLLYKMAEEFLSTSDGKILD  212 (496)
Q Consensus       144 ~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~-~----~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g  212 (496)
                      ++.  ....+.+.++.+..+..+...+.   ..+... .. .    .....+.+.++|+++|+++|++.+.         
T Consensus       156 pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~l~---------  226 (444)
T COG1232         156 PLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEKLE---------  226 (444)
T ss_pred             HHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccccCccHHHHHHHHHHHhh---------
Confidence            111  11234555555522222111110   000000 00 1    1123567789999999999999964         


Q ss_pred             cceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCC
Q 010995          213 NRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCK  292 (496)
Q Consensus       213 ~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~  292 (496)
                      .+|++|++|+.|.++..++.+.+.+|..++||.||+|+|+..+.+ ++   ++  ....+.+..+.+.+...|.+.|+.+
T Consensus       227 ~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~-ll---~~--~~~~~~~~~~~~~s~~~vv~~~~~~  300 (444)
T COG1232         227 AKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELAR-LL---GD--EAVSKAAKELQYTSVVTVVVGLDEK  300 (444)
T ss_pred             hceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHH-Hc---CC--cchhhhhhhccccceEEEEEEeccc
Confidence            459999999999999887888788888999999999999999987 22   22  2346677888888888888888876


Q ss_pred             CCCCCC-CCceEEeecCCCCcccccee--ccccCC-CCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCCCCCCC
Q 010995          293 FWPCSP-GKEFFIYAHERRGYYTFWQH--MENAYP-GSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNA  368 (496)
Q Consensus       293 ~w~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~  368 (496)
                      .-+..+ +.++++.+++......+|.+  ++...| +..++.+.+.....+....++|||+++.++++|.++++... ++
T Consensus       301 ~~~~~~~~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~~~-~~  379 (444)
T COG1232         301 DNPALPDGYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKLGGING-DP  379 (444)
T ss_pred             cccCCCCceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHHcCcCc-ch
Confidence            222222 33455555443222223442  222233 56677777765555556678899999999999999997653 45


Q ss_pred             CeeEecccCCCCCCCcccCCCCCCCChHHHHHHhCC----CCcEEEccccccCcCCccchHHHHHHHHHHHHHH
Q 010995          369 TDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAP----VAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVV  438 (496)
Q Consensus       369 ~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~~~~p----~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il  438 (496)
                      .+..+.||..      +++++.+|+. +....++..    +++|+.+|.|...   =++..++.+|..||++|+
T Consensus       380 ~~~~v~r~~~------~~PqY~vG~~-~~~~~ir~~l~~~y~gi~~~G~~~~g---~g~~d~I~~g~~aa~~l~  443 (444)
T COG1232         380 VFVEVTRWKY------AMPQYEVGHL-DRLEPIRAALKGAYPGIKSVGRYGEG---VGLPDCIAAGKEAAEQLL  443 (444)
T ss_pred             hheeeeeccc------cCCccchhHH-HHHHHHHHhhccccCCeEEeccCCCC---CCchHHHHHHHHHHHHhh
Confidence            5889999976      9999999984 444444433    3689999998864   268999999999999875

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=100.00  E-value=3.8e-35  Score=297.47  Aligned_cols=398  Identities=17%  Similarity=0.211  Sum_probs=241.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeee-eCCcEEeecceEEecCCCCCCChHHHHHHhcCCccc
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEK-FGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTC   86 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~~   86 (496)
                      +|+|||||++||+||+.|+++|+ +|+|+|+++++||+++++. .+|+.+|.|+|++..    .+++++++++++|+...
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~-~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~----~~~~~~~~~~~lg~~~~   75 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGH-EVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFG----CYANLFRLMKKVGAEDN   75 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEEecCCCCceeeeeecCCCceEeeceEEecC----chHHHHHHHHHcCCccc
Confidence            58999999999999999999999 6999999999999999974 679999999999998    78899999999999765


Q ss_pred             cccCCCcceEEEcCCCcc--------cChh--HHHHHH-------HH----HHHHH-HHHhc----------cc-cccch
Q 010995           87 FSDYTNARYNIYDRSGKI--------IPSG--VAADSY-------KK----AVESA-IANLK----------NL-EATNS  133 (496)
Q Consensus        87 ~~~~~~~~~~~~~~~g~~--------~~~~--~~~~~~-------~~----~~~~~-~~~~~----------~~-~~~~~  133 (496)
                      ...... ...+...++..        ++.+  .....+       ..    ..... .....          .. .....
T Consensus        76 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (474)
T TIGR02732        76 LLLKEH-THTFVNKGGDIGELDFRFATGAPFNGLKAFFTTSQLKWVDKLRNALALGTSPIVRGLVDYDGAMKTIRDLDKI  154 (474)
T ss_pred             cccccc-eeEEEcCCCcccccccCCCCCCchhhhHHHhcCCCCCHHHHHHHHHHhhhhHHHhhccccchhhhhhhhhccc
Confidence            432211 11122223332        1111  111111       00    00000 00000          00 01123


Q ss_pred             hHHHHHHhhhcC-------------CCCCCChHHHHHHHHHhhccccccCCcccccccCCcceeeeCcccHHH-HHHHHH
Q 010995          134 NIGEVIKAATEL-------------PSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYAH-LLYKMA  199 (496)
Q Consensus       134 ~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-l~~~l~  199 (496)
                      ++.+|+......             .....++.+.+..++...+.        .+........+.++++|++. +.+.|.
T Consensus       155 t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~--------~~~~~~~~s~~~~~~g~~~~~l~~pl~  226 (474)
T TIGR02732       155 SFAEWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFM--------LFAAKTEASKLRMLKGSPDKYLTKPIL  226 (474)
T ss_pred             cHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--------HHHhCCCcceeeeecCCcchhHHHHHH
Confidence            455555541000             00011222222222211100        01111111233344566555 556677


Q ss_pred             HhhccCCCCCccccceeeCceeEEEEEcC--Cc---eE-EEeCCC---cEEEcCEEEEecChHHHhcCCcccCCCCcHHH
Q 010995          200 EEFLSTSDGKILDNRLKLNKVVRELQHSR--NG---VT-VKTEDG---CVYEANYVILSASIGVLQSDLISFKPPLPKWK  270 (496)
Q Consensus       200 ~~~~~~~~~~~~g~~i~~~~~V~~I~~~~--~~---v~-V~~~~G---~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~  270 (496)
                      +.+.+      .|++|+++++|++|+.++  ++   ++ |.+.+|   +++.||+||+|+|+..+.+ ++.-.+... ..
T Consensus       227 ~~L~~------~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~-Ll~~~~~~~-~~  298 (474)
T TIGR02732       227 EYIEA------RGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKR-LLPQEWRQF-EE  298 (474)
T ss_pred             HHHHH------CCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHh-hCChhhhcC-HH
Confidence            77776      699999999999999854  22   33 445433   5689999999999999987 332111111 25


Q ss_pred             HHHHhhCCCcceeEEEEEcCCCCCCCCC-----------CCceEEeecCCCCcccccee-----ccccC-CCC-cEEEEE
Q 010995          271 TEAIEKCDVMVYTKIFLKFPCKFWPCSP-----------GKEFFIYAHERRGYYTFWQH-----MENAY-PGS-NILVVT  332 (496)
Q Consensus       271 ~~~i~~~~~~~~~~v~l~~~~~~w~~~~-----------~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~-~vl~~~  332 (496)
                      ...+..+.+.++..|+++|+++.-....           +...+.+..+ . .+.++..     ..... ++. .++.+.
T Consensus       299 ~~~l~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~  376 (474)
T TIGR02732       299 FDNIYKLDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTAD-A-DFSCFADLALTSPDDYYKEGQGSLLQCV  376 (474)
T ss_pred             HhhHhcCCCCCeEEEEEEeccccccccchhhhhcccccccccccccccC-c-cceeeehhhccCHHHHhccCCCeEEEEE
Confidence            6678889999999999999864321100           0000011110 0 0111111     10111 232 333344


Q ss_pred             eccccchhcccCCcHHHHHHHHHHHHHhcCC-CCCCCCeeEecccCCCCCCCcccCCCCCCCChHHHHHHhCCCCcEEEc
Q 010995          333 LTNGESKRVEAQPDEETLKEAMEVLQDMFGP-DIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFT  411 (496)
Q Consensus       333 ~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~-~~~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~l~~a  411 (496)
                      +.  .+..+.+++++|+++.++++|+++|+. ...++.+..+.+..+      +...+.||. ...+|..++|++|||+|
T Consensus       377 ~~--~~~~~~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~------a~~~~~pg~-~~~~P~~~t~~~~l~lA  447 (474)
T TIGR02732       377 LT--PGDPWMPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQ------SLYREAPGM-DPFRPDQKTPISNFFLA  447 (474)
T ss_pred             Ee--ChhhhcCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecC------ceeccCCCC-cccCCCCCCCCCCeEEe
Confidence            43  345677899999999999999999973 223455555666544      444566787 35678888999999999


Q ss_pred             cccccCcCCccchHHHHHHHHHHHHHH
Q 010995          412 GEHTSERFNGYVHGGYLAGIDTGKAVV  438 (496)
Q Consensus       412 Gd~~~~~~~g~~egA~~SG~~aA~~il  438 (496)
                      |||+..+|+++||||++||.+||+.|+
T Consensus       448 GD~t~~~~pas~egAv~sG~~aA~~i~  474 (474)
T TIGR02732       448 GSYTQQDYIDSMEGATLSGRQAAAAIL  474 (474)
T ss_pred             ccccccCchHHHhHHHHHHHHHHHHhC
Confidence            999999999999999999999999874

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=100.00  E-value=1.9e-33  Score=284.26  Aligned_cols=379  Identities=17%  Similarity=0.219  Sum_probs=238.1

Q ss_pred             HHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCc--EEeecceEEecCCCCCCChHHHHHHhcCCccccccCCCcceEE
Q 010995           20 SAGKILAENGIEDILILEASDRIGGRVRNEKFGGV--SVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYTNARYNI   97 (496)
Q Consensus        20 ~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~--~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~   97 (496)
                      +||+.|+++|+ +|+|||+++++||++.|.+.+|+  .+|.|+|++..    .++++.+++++||++...... ...+.+
T Consensus         1 ~AA~~L~~~G~-~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~----~~~~~~~l~~~lgl~~~~~~~-~~~~~~   74 (419)
T TIGR03467         1 SAAVELARAGA-RVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLG----AYTNLLALLRRIGAEPRLQGP-RLPLPF   74 (419)
T ss_pred             ChHHHHHhCCC-ceEEEecCCCCCCceeEeecCCCCcceecCCEEEEc----ccHHHHHHHHHhCCchhhhcc-cCCcce
Confidence            58999999999 69999999999999999998865  49999999998    788999999999998665311 111223


Q ss_pred             EcCCCcc-------cChhH--HHHH----------HHHHHHHHHHHhc--cccccchhHHHHHHhhh-c----------C
Q 010995           98 YDRSGKI-------IPSGV--AADS----------YKKAVESAIANLK--NLEATNSNIGEVIKAAT-E----------L  145 (496)
Q Consensus        98 ~~~~g~~-------~~~~~--~~~~----------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~----------~  145 (496)
                      +.+++..       ++.+.  ....          ...+.........  .......++.+|+.... .          +
T Consensus        75 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~  154 (419)
T TIGR03467        75 YDPGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALRRTRFRALDDTTVGDWLQAAGQSERLIERLWEPL  154 (419)
T ss_pred             ecCCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHcCCCHHHHHHHHHHH
Confidence            3333321       11111  0000          0011111111111  01112234556655311 0          0


Q ss_pred             --CCCCCChHHHHHHHHHhhccccccCCcccccccCCcceeeeCcccHHHHHHH-HHHhhccCCCCCccccceeeCceeE
Q 010995          146 --PSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYK-MAEEFLSTSDGKILDNRLKLNKVVR  222 (496)
Q Consensus       146 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~-l~~~~~~~~~~~~~g~~i~~~~~V~  222 (496)
                        .....++.+.+..++...+..       .+........+.++++|++.++.. |++.+.+      .|++|++|++|+
T Consensus       155 ~~~~~~~~~~~~s~~~~~~~~~~-------~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~------~g~~i~~~~~V~  221 (419)
T TIGR03467       155 LLSALNTPPERASAALAAKVLRD-------SFLAGRAASDLLLPRVPLSELFPEPARRWLDS------RGGEVRLGTRVR  221 (419)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHH-------HHhcCCCcceeeeeCCCHHHHHHHHHHHHHHH------cCCEEEcCCeee
Confidence              000112333333222211100       000001112244567888877644 8888766      689999999999


Q ss_pred             EEEEcCCceEEEe-CCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCCCCc
Q 010995          223 ELQHSRNGVTVKT-EDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKE  301 (496)
Q Consensus       223 ~I~~~~~~v~V~~-~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~~~~  301 (496)
                      +|+.+++++++.. .+|+++.||+||+|+|+..+.+ ++   |.  ....+.++.+++.++.++++.|++++|.+.+   
T Consensus       222 ~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~-ll---~~--~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~---  292 (419)
T TIGR03467       222 SIEANAGGIRALVLSGGETLPADAVVLAVPPRHAAS-LL---PG--EDLGALLTALGYSPITTVHLRLDRAVRLPAP---  292 (419)
T ss_pred             EEEEcCCcceEEEecCCccccCCEEEEcCCHHHHHH-hC---CC--chHHHHHhhcCCcceEEEEEEeCCCcCCCCC---
Confidence            9999988876543 3677899999999999999987 22   22  1456778899999999999999999985522   


Q ss_pred             eEEeecCCCCccccceeccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCCCC-CCCCeeEecccCCCC
Q 010995          302 FFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDI-PNATDILVPRWWNNR  380 (496)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~~-~~~~~~~~~rw~~~~  380 (496)
                      ++.+.....  ..++. .....+....+..++.  .+..+..++++++++.++++|.++||... ..+....+.+|....
T Consensus       293 ~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  367 (419)
T TIGR03467       293 MVGLVGGLA--QWLFD-RGQLAGEPGYLAVVIS--AARDLVDLPREELADRIVAELRRAFPRVAGAKPLWARVIKEKRAT  367 (419)
T ss_pred             eeeecCCce--eEEEE-CCcCCCCCCEEEEEEe--cchhhccCCHHHHHHHHHHHHHHhcCccccCCccceEEEEccCCc
Confidence            222211111  11111 1111122334444333  34567788999999999999999997432 345566677775422


Q ss_pred             CCCcccCCCCCCCChHHHHHHhCCCCcEEEccccccCcCCccchHHHHHHHHHHHHHH
Q 010995          381 FQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVV  438 (496)
Q Consensus       381 ~~~g~~~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il  438 (496)
                           | .+.||. ...++.+.+|.+|||||||+++.+++++||||+.||.+||++|+
T Consensus       368 -----~-~~~~g~-~~~~~~~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~  418 (419)
T TIGR03467       368 -----F-AATPGL-NRLRPGARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVL  418 (419)
T ss_pred             -----c-ccCCcc-cccCCCCCCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHh
Confidence                 2 234554 23455567889999999999998778899999999999999986

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=100.00  E-value=1e-33  Score=248.33  Aligned_cols=324  Identities=20%  Similarity=0.306  Sum_probs=232.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCccc
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTC   86 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~~   86 (496)
                      .+|+||||||+||+||+.|+++|+ .|+|+||+.-+|||+.|.+..+..+|.|+++|..    ....+.++++.+.-+..
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~-~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~----~~~~F~~~Ve~~~~~gl   76 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGR-EVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKP----RDELFLRAVEALRDDGL   76 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCc-EEEEEEcCCCcccchheeccCCccccccceeecC----CchHHHHHHHHHHhCCc
Confidence            579999999999999999999999 6999999999999999999999899999999998    78888887776553333


Q ss_pred             cccCCCcceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHHhhccc
Q 010995           87 FSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEM  166 (496)
Q Consensus        87 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (496)
                      ...+...   +|...|.-.+                                                            
T Consensus        77 V~~W~~~---~~~~~~~~~~------------------------------------------------------------   93 (331)
T COG3380          77 VDVWTPA---VWTFTGDGSP------------------------------------------------------------   93 (331)
T ss_pred             eeecccc---ccccccCCCC------------------------------------------------------------
Confidence            3222221   1111111000                                                            


Q ss_pred             cccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCC-cEEEcCE
Q 010995          167 AEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDG-CVYEANY  245 (496)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G-~~~~ad~  245 (496)
                                .-+...- +..+-||..|.+.|+..+           +|.++++|++|.+.++.|++.+++| +..++|.
T Consensus        94 ----------~~~d~~p-yvg~pgmsalak~LAtdL-----------~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~  151 (331)
T COG3380          94 ----------PRGDEDP-YVGEPGMSALAKFLATDL-----------TVVLETRVTEVARTDNDWTLHTDDGTRHTQFDD  151 (331)
T ss_pred             ----------CCCCCCc-cccCcchHHHHHHHhccc-----------hhhhhhhhhhheecCCeeEEEecCCCcccccce
Confidence                      0000010 223568999999887764           6999999999999999999999766 5679999


Q ss_pred             EEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCCCCceEEeecCCCCccccceecccc---
Q 010995          246 VILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENA---  322 (496)
Q Consensus       246 VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  322 (496)
                      ||+|+|.+++..++-.....+|+..+..+..+.|.++..+.+.|+.+.-...++  +++  ++.   ..-|...+..   
T Consensus       152 vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~~P~~G--~~v--dg~---~laWla~d~sK~g  224 (331)
T COG3380         152 VVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQPLDRPWPG--NFV--DGH---PLAWLARDASKKG  224 (331)
T ss_pred             EEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHhcCCccCCCCCCC--ccc--CCC---eeeeeeccccCCC
Confidence            999999999886322122357888889999999999999999998654322222  222  111   1234443322   


Q ss_pred             -CCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCCCCCCCCeeEecccCCCCCCCcccCCCCCCCChHHHHHH
Q 010995          323 -YPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSI  401 (496)
Q Consensus       323 -~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~~  401 (496)
                       .+...+++.....+.+....+.++++.+..+.....+..+...+.|.....++|.-      +.++...+.     +.+
T Consensus       225 ~~p~~~~~vvqasp~wSr~h~~~~~e~~i~~l~aA~~~~~~~~~~~p~~s~~H~WrY------A~P~~~~~~-----~~L  293 (331)
T COG3380         225 HVPDGEIWVVQASPDWSREHLDHPAEQVIVALRAAAQELDGDRLPEPDWSDAHRWRY------AIPNDAVAG-----PPL  293 (331)
T ss_pred             CCCcCceEEEEeCchHHHHhhcCCHHHHHHHHHHhhhhccCCCCCcchHHHhhcccc------ccccccccC-----Ccc
Confidence             23445777777777888888888888887777778888876778888888999942      222211111     112


Q ss_pred             h-CCCCcEEEccccccCcCCccchHHHHHHHHHHHHHHHHH
Q 010995          402 R-APVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKI  441 (496)
Q Consensus       402 ~-~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l  441 (496)
                      - .+-.+||+||||++.   |-+|||++||+.+|.+|++.|
T Consensus       294 ~ad~~~~l~~cGDwc~G---grVEgA~LSGlAaA~~i~~~L  331 (331)
T COG3380         294 DADRELPLYACGDWCAG---GRVEGAVLSGLAAADHILNGL  331 (331)
T ss_pred             ccCCCCceeeecccccC---cchhHHHhccHHHHHHHHhcC
Confidence            1 344689999999986   789999999999999998753

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=100.00  E-value=3.8e-30  Score=264.40  Aligned_cols=412  Identities=16%  Similarity=0.189  Sum_probs=228.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCccc
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTC   86 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~~   86 (496)
                      .||||||||++||+||..|+++|+ +|+|||+++++||+++|++.+|+.||.|++++..+.  ....+..+++++|+...
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~-~v~vlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~--~~~~~~~~~~~lg~~~~   78 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGY-RVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLE--PGGIHARIFRELGIPLP   78 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCC-eEEEEecCCCCCCccceeccCCEEEeecceEEEecC--cCCHHHHHHHHcCCCCc
Confidence            689999999999999999999999 699999999999999999999999999999997631  23446678889998733


Q ss_pred             cccCCCcceEEEcCCCc-ccC--hh---HHHH----------HHHHHH---HHHHHHhcccc---ccc------------
Q 010995           87 FSDYTNARYNIYDRSGK-IIP--SG---VAAD----------SYKKAV---ESAIANLKNLE---ATN------------  132 (496)
Q Consensus        87 ~~~~~~~~~~~~~~~g~-~~~--~~---~~~~----------~~~~~~---~~~~~~~~~~~---~~~------------  132 (496)
                      .....+..+.++.++|. .+.  ..   ...+          .+....   +.........+   ...            
T Consensus        79 ~~~~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (492)
T TIGR02733        79 EAKILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSALR  158 (492)
T ss_pred             ccccCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhcC
Confidence            11111222334445652 221  00   0000          011100   00000000000   000            


Q ss_pred             -----------hhHHHHHHhhhcCCCCCCChHHHHHHHHHhhcccc---ccCCccc--cccc-CCcceeeeCcccHHHHH
Q 010995          133 -----------SNIGEVIKAATELPSSPKTPLELAIDFILHDFEMA---EVEPIST--YVDF-GEREFLVADERGYAHLL  195 (496)
Q Consensus       133 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~-~~~~~~~~~~~G~~~l~  195 (496)
                                 .++.+++..   .........+..+.+........   +......  ...+ .......+++||++.|+
T Consensus       159 ~~~~~~~~~~~~s~~~~l~~---~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~GG~~~l~  235 (492)
T TIGR02733       159 PDTLLTGPLSLLTVADLLRL---CGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMAQAPHGLWHLHGSMQTLS  235 (492)
T ss_pred             hhhhhhhhhhhhhHHHHHHH---hCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhccccCCCceeecCcHHHHH
Confidence                       001111111   00000001111111111000000   0000000  0011 11112345689999999


Q ss_pred             HHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCCC-----cEEEcCEEEEecChHHHhcCCcccCCCCcHH
Q 010995          196 YKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDG-----CVYEANYVILSASIGVLQSDLISFKPPLPKW  269 (496)
Q Consensus       196 ~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G-----~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~  269 (496)
                      ++|++.+++      .|++|++|++|++|..++++++ |.+.+|     +++.||+||+|+|+..+.+ ++ ..+.+++.
T Consensus       236 ~aL~~~~~~------~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~-ll-~~~~~~~~  307 (492)
T TIGR02733       236 DRLVEALKR------DGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLE-LL-GPLGLPPG  307 (492)
T ss_pred             HHHHHHHHh------cCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHH-hc-CcccCCHH
Confidence            999999887      6999999999999999877543 433333     5789999999999999987 33 33567766


Q ss_pred             HHHHHhhCCCcc-eeEEEEEcCCCCCCCC-CCCceEEeecCCCCccccceecc--ccCCCCcEEEEEeccccchhcccC-
Q 010995          270 KTEAIEKCDVMV-YTKIFLKFPCKFWPCS-PGKEFFIYAHERRGYYTFWQHME--NAYPGSNILVVTLTNGESKRVEAQ-  344 (496)
Q Consensus       270 ~~~~i~~~~~~~-~~~v~l~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vl~~~~~~~~a~~~~~~-  344 (496)
                      ..+.++++++.+ .+++++.+++..-+.. .......+.... .++......+  ..++|..+++.....+ ...|..+ 
T Consensus       308 ~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~d~~~aP~G~~~l~~~~~~~-~~~~~~~~  385 (492)
T TIGR02733       308 YRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDHQG-SLFVSISQEGDGRAPQGEATLIASSFTD-TNDWSSLD  385 (492)
T ss_pred             HHHHHhcCCCCCceEEEEEeecccccCCCCCcceeeccCCCc-eEEEEeCCccccCCCCCceEEEEEcCCC-HHHHcCCC
Confidence            777788888776 4578899987421111 111112222111 1111111111  1334666665444322 2233222 


Q ss_pred             ------CcHHHHHHHHHHHHHhcCCCCCC-CCeeEe------cccCCCCCCCcccCCCC--CCCChHHHHHHhCCCCcEE
Q 010995          345 ------PDEETLKEAMEVLQDMFGPDIPN-ATDILV------PRWWNNRFQRGSYSNYP--IISDNQLVNSIRAPVAGIF  409 (496)
Q Consensus       345 ------~~ee~~~~~~~~L~~~~~~~~~~-~~~~~~------~rw~~~~~~~g~~~~~~--~g~~~~~~~~~~~p~~~l~  409 (496)
                            -.+++.+.+++.|++.++ ...+ ++...+      .++...+  .|++....  +.+.....+..++|++|||
T Consensus       386 ~~~y~~~k~~~~~~il~~le~~~p-~l~~~i~~~~v~TP~t~~~~~~~~--~G~~~G~~~~~~q~~~~~~~~~t~i~gLy  462 (492)
T TIGR02733       386 EEDYTAKKKQYTQTIIERLGHYFD-LLEENWVHVELATPRTFERWTGRP--QGIVGGLGQRPSTFGPFGLSSRTPVKGLW  462 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCC-CccccEEEEEccCCchHHHHhCCC--CcEECCCCcCccccCCcCCCCCCCCCCeE
Confidence                  134577778888888775 2222 221111      2222211  33322111  2221112223367999999


Q ss_pred             EccccccCcCCccchHHHHHHHHHHHHHHH
Q 010995          410 FTGEHTSERFNGYVHGGYLAGIDTGKAVVE  439 (496)
Q Consensus       410 ~aGd~~~~~~~g~~egA~~SG~~aA~~il~  439 (496)
                      |||++++++  +++.|++.||..||++|++
T Consensus       463 l~G~~~~pG--~Gv~g~~~sg~~~a~~i~~  490 (492)
T TIGR02733       463 LCGDSIHPG--EGTAGVSYSALMVVRQILA  490 (492)
T ss_pred             EecCccCCC--CcHHHHHHHHHHHHHHHhh
Confidence            999999773  4799999999999999985

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.97  E-value=2.7e-29  Score=258.93  Aligned_cols=418  Identities=15%  Similarity=0.156  Sum_probs=224.8

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCc--cc
Q 010995            9 VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLR--TC   86 (496)
Q Consensus         9 VvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~--~~   86 (496)
                      |||||||++||+||.+|+++|+ +|+|||+++++||+++|++.+|+.+|.|++++..    . ..+.++++++|++  ..
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~-~V~VlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~----~-~~~~~l~~~lg~~l~~~   74 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGI-PVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITM----P-EALEELFALAGRDLADY   74 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCC-cEEEEECCCCCcCceEEEecCCeEEecCCeEEcc----c-cHHHHHHHHcCCChhhe
Confidence            7999999999999999999999 6999999999999999999999999999999864    2 5667888888853  11


Q ss_pred             c--ccCCCcceEEEcCCCcccChh----HHH-----------HHHHHHHHHHHHHhc----c-ccccchhHHHHHHhh--
Q 010995           87 F--SDYTNARYNIYDRSGKIIPSG----VAA-----------DSYKKAVESAIANLK----N-LEATNSNIGEVIKAA--  142 (496)
Q Consensus        87 ~--~~~~~~~~~~~~~~g~~~~~~----~~~-----------~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~--  142 (496)
                      .  .... ..+.++.++|..++..    ...           +.+..+.+.......    . ......+...+....  
T Consensus        75 l~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (502)
T TIGR02734        75 VELVPLD-PFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRADLP  153 (502)
T ss_pred             EEEEECC-CceEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhH
Confidence            1  1111 2233444556543311    000           011111111111000    0 000000011111000  


Q ss_pred             -hcCCCCCCChHHHHHHH--------HHh-hccccccCCc-----cccccc-CCcceeeeCcccHHHHHHHHHHhhccCC
Q 010995          143 -TELPSSPKTPLELAIDF--------ILH-DFEMAEVEPI-----STYVDF-GEREFLVADERGYAHLLYKMAEEFLSTS  206 (496)
Q Consensus       143 -~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~G~~~l~~~l~~~~~~~~  206 (496)
                       ...........+....+        +.. ........+.     .....+ ..........+|++.++++|.+.+++  
T Consensus       154 ~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~g~~p~~~~~~~~l~~~~~~~~g~~~~~gG~~~l~~al~~~~~~--  231 (502)
T TIGR02734       154 QLLALLAWRSLYSKVARFFSDERLRQAFSFHALFLGGNPFRTPSIYALISALEREWGVWFPRGGTGALVAAMAKLAED--  231 (502)
T ss_pred             hhhhccCcCCHHHHHHhhcCCHHHHHHhcccceeeccCcccchHHHHHHHHHHhhceEEEcCCCHHHHHHHHHHHHHH--
Confidence             00000000000000000        000 0000000000     000000 00122335678999999999999887  


Q ss_pred             CCCccccceeeCceeEEEEEcCCc-eEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCC-cHHHHHHHhhCCCc-cee
Q 010995          207 DGKILDNRLKLNKVVRELQHSRNG-VTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPL-PKWKTEAIEKCDVM-VYT  283 (496)
Q Consensus       207 ~~~~~g~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l-~~~~~~~i~~~~~~-~~~  283 (496)
                          .|++|+++++|++|..++++ +.|++.+|+++.||.||+|+++..+...++  .+.. ++...+.++++.++ +.+
T Consensus       232 ----~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~s~s~~  305 (502)
T TIGR02734       232 ----LGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLL--PNHPRRRYPAARLSRKRPSPSLF  305 (502)
T ss_pred             ----CCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhc--CccccccccccccccCCcCCeee
Confidence                79999999999999988776 458888888899999999999977765333  2222 22233445555643 467


Q ss_pred             EEEEEcCC--CCCCCCCCCceEEeecCCC--------C----cccccee----cc--ccCCCCcEEEEEecccc----ch
Q 010995          284 KIFLKFPC--KFWPCSPGKEFFIYAHERR--------G----YYTFWQH----ME--NAYPGSNILVVTLTNGE----SK  339 (496)
Q Consensus       284 ~v~l~~~~--~~w~~~~~~~~~~~~~~~~--------~----~~~~~~~----~~--~~~~~~~vl~~~~~~~~----a~  339 (496)
                      ++++.++.  .-|+......++...+...        +    ...++.+    .+  ..++|..++.++...+.    ..
T Consensus       306 ~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~~~~  385 (502)
T TIGR02734       306 VLYFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGTADV  385 (502)
T ss_pred             EEEEeeccccCcCCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCCCCC
Confidence            78888873  1233211111111111000        0    0111111    11  23345555544433221    11


Q ss_pred             hcccCCcHHHHHHHHHHHHHh-cCCCCCCCCeeE------ecccCCCCCCCcccCCCC--CCCChHHHHH-HhCCCCcEE
Q 010995          340 RVEAQPDEETLKEAMEVLQDM-FGPDIPNATDIL------VPRWWNNRFQRGSYSNYP--IISDNQLVNS-IRAPVAGIF  409 (496)
Q Consensus       340 ~~~~~~~ee~~~~~~~~L~~~-~~~~~~~~~~~~------~~rw~~~~~~~g~~~~~~--~g~~~~~~~~-~~~p~~~l~  409 (496)
                      .|.. ..+++.+.+++.|++. ++.-...++...      ..++...+  .|+.....  ..+....++. ..+|++|||
T Consensus       386 ~~~~-~k~~~~~~il~~l~~~~~p~l~~~i~~~~~~TP~t~~~~~~~~--~G~~~G~~~~~~q~~~~rp~~~~t~i~gLy  462 (502)
T TIGR02734       386 DWSV-EGPRYRDRILAYLEERAIPGLRDRIVVERTFTPADFRDRYNAW--LGSAFSLEHTLTQSAWFRPHNRDRKIDNLY  462 (502)
T ss_pred             CcHH-HHHHHHHHHHHHHHHhcCCChhHheEEEEEcCHHHHHHhcCCC--CccccchhhchhhcccCCCCCCCCCCCCEE
Confidence            2322 2456788889999887 642111122111      12222111  33322111  1111112222 356899999


Q ss_pred             EccccccCcCCccchHHHHHHHHHHHHHHHHHhcccc
Q 010995          410 FTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNE  446 (496)
Q Consensus       410 ~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~~~~~  446 (496)
                      +||++++++  +++.||+.||..||+.|+...+.+++
T Consensus       463 l~G~~~~pG--~Gv~g~~~sg~~~a~~il~~~~~~~~  497 (502)
T TIGR02734       463 LVGAGTHPG--AGVPGVLGSAKATAKLMLGDLAPGPE  497 (502)
T ss_pred             EeCCCCCCC--CCHHHHHHHHHHHHHHHHhhccCCCC
Confidence            999999763  47999999999999999998776654

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=99.97  E-value=5.5e-28  Score=225.59  Aligned_cols=412  Identities=18%  Similarity=0.209  Sum_probs=259.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCC-cEEEEeeCCCCCeEEEe-eeeCCcEEeecceEEecCCCCCCChHHHHHHhcC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIE-DILILEASDRIGGRVRN-EKFGGVSVELGAGWIAGVGGKESNPVWELASKSG   82 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~-~V~vlEa~~~~GGr~~t-~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lg   82 (496)
                      ...+|+|+|||||||++||+|++.+.+ .|+|+|+++|+||.++| ..-+++.||.|++.+.+.+ ...-.+.+++++||
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag-~~g~~~l~lv~dLG   88 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAG-PGGAETLDLVSDLG   88 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCC-cchhHHHHHHHHcC
Confidence            467999999999999999999999873 25669999999999999 4567999999999998832 12336899999999


Q ss_pred             CccccccCCCc----ceEEEcCCCcc--cChhHH-----------HHHHHHHHHHHHHHh--ccccccchh--HHHHHHh
Q 010995           83 LRTCFSDYTNA----RYNIYDRSGKI--IPSGVA-----------ADSYKKAVESAIANL--KNLEATNSN--IGEVIKA  141 (496)
Q Consensus        83 l~~~~~~~~~~----~~~~~~~~g~~--~~~~~~-----------~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~  141 (496)
                      +++...+....    ...+.+..|++  +|....           ..++..++....+..  ....|+++.  +++.|+.
T Consensus        89 l~~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~~~~l~p~~k~L~~a~l~e~fr~~~~~~~~dESV~sF~~RrfG~  168 (491)
T KOG1276|consen   89 LEDELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSLKFSLQPFGKPLLEAFLRELFRKKVSDPSADESVESFARRRFGK  168 (491)
T ss_pred             ccceeeecCCCChhhhheeeccCcccccCCcccccccccccCcccchhHHHHHhhhccccCCCCCccccHHHHHHHhhhH
Confidence            98766443321    11233455554  232221           112233332222221  122334431  2222222


Q ss_pred             -----hh-cCC--CCCCChHHHHHHHHHhhccccc----------------------cCCcccccccCCcceeeeCcccH
Q 010995          142 -----AT-ELP--SSPKTPLELAIDFILHDFEMAE----------------------VEPISTYVDFGEREFLVADERGY  191 (496)
Q Consensus       142 -----~~-~~~--~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~G~  191 (496)
                           .+ ++.  ....++..++....+..+...+                      .+.........+.......++|+
T Consensus       169 eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGl  248 (491)
T KOG1276|consen  169 EVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGGL  248 (491)
T ss_pred             HHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhhhhhhH
Confidence                 11 111  1234666666665543222111                      00000001111122334568999


Q ss_pred             HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcC-CceEEEe--CCCc-EEEcCEEEEecChHHHhcCCcccCCCCc
Q 010995          192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSR-NGVTVKT--EDGC-VYEANYVILSASIGVLQSDLISFKPPLP  267 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~-~~v~V~~--~~G~-~~~ad~VI~A~p~~~l~~~li~~~p~l~  267 (496)
                      +.+++++.+.|.+      ..+.|.++.++..+.... ++|.+++  .++. ....+++..|+|...+..    ..+.+.
T Consensus       249 e~lP~a~~~~L~~------~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~----ll~~~~  318 (491)
T KOG1276|consen  249 ETLPKALRKSLGE------REVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAK----LLRGLQ  318 (491)
T ss_pred             hHhHHHHHHHhcc------cchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHhhh----hccccc
Confidence            9999999999887      468889999999888754 5566554  4442 345666667999999887    235555


Q ss_pred             HHHHHHHhhCCCcceeEEEEEcCCCC-CCCCCCCceEEeecCCC---Ccccccee--ccccCCCCcEEEEEeccccchhc
Q 010995          268 KWKTEAIEKCDVMVYTKIFLKFPCKF-WPCSPGKEFFIYAHERR---GYYTFWQH--MENAYPGSNILVVTLTNGESKRV  341 (496)
Q Consensus       268 ~~~~~~i~~~~~~~~~~v~l~~~~~~-w~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~vl~~~~~~~~a~~~  341 (496)
                      +....++..++|.++..|.+.|.++- -.+..+++.+++.....   .+.++|++  +++.. +.+.+++++.+...+.+
T Consensus       319 ~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~-~s~~vtvm~gg~~~~n~  397 (491)
T KOG1276|consen  319 NSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRS-PSPKVTVMMGGGGSTNT  397 (491)
T ss_pred             hhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeecccCCCCC-CCceEEEEecccccccC
Confidence            56778889999999999999998753 12234667777642211   23345553  22222 23355555554443333


Q ss_pred             c--cCCcHHHHHHHHHHHHHhcCCCCCCCCeeEecccCCCCCCCcccCCCCCCCChH---HHHHHhC-CCCcEEEccccc
Q 010995          342 E--AQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQ---LVNSIRA-PVAGIFFTGEHT  415 (496)
Q Consensus       342 ~--~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~---~~~~~~~-p~~~l~~aGd~~  415 (496)
                      .  ..|.||+++.+.++|+++++... .|....++-|.+      |.++|..|+...   ....+.+ +-.+|+++|.|+
T Consensus       398 ~~~~~S~ee~~~~v~~alq~~Lgi~~-~P~~~~v~l~~~------ciPqy~vGh~~~le~a~~~l~~~~g~~l~l~G~~y  470 (491)
T KOG1276|consen  398 SLAVPSPEELVNAVTSALQKMLGISN-KPVSVNVHLWKN------CIPQYTVGHDDVLEAAKSMLTDSPGLGLFLGGNHY  470 (491)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHhCCCC-Ccccccceehhh------cccceecchHHHHHHHHHHHHhCCCCceEeecccc
Confidence            3  35899999999999999998643 477667777866      999999998532   1222222 226899999999


Q ss_pred             cCcCCccchHHHHHHHHHHHHHH
Q 010995          416 SERFNGYVHGGYLAGIDTGKAVV  438 (496)
Q Consensus       416 ~~~~~g~~egA~~SG~~aA~~il  438 (496)
                      ..   -.+...+.||.++|.+++
T Consensus       471 ~G---v~vgdcI~sg~~~A~~v~  490 (491)
T KOG1276|consen  471 GG---VSVGDCIESGRKTAVEVI  490 (491)
T ss_pred             CC---CChhHHHHhhHHHHHhhc
Confidence            75   257788888888887764

>TIGR02730 carot_isom carotene isomerase

Probab=99.96  E-value=6e-27  Score=240.30  Aligned_cols=420  Identities=15%  Similarity=0.165  Sum_probs=222.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCC-CCChHHHHHHhcCCcc
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGK-ESNPVWELASKSGLRT   85 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~-~~~~~~~l~~~lgl~~   85 (496)
                      +||||||||++||+||..|+++|+ +|+|||+++.+||++++++.+|+.||.|++++.+++.. ..+.+.+++..++...
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~-~V~vlE~~~~~GG~~~~~~~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGA-KVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKL   79 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCC-cEEEEECCCCCCCceeEeccCCEEEEecchhheecCCcccccHHHHHHHHcCCcc
Confidence            589999999999999999999999 69999999999999999999999999999998764311 2234566777666432


Q ss_pred             ccccCCCcceEEEcCCCcccCh-hHH----H----------HHHHHHHHHHHHHhc---cccc----cchhH-HHHHHh-
Q 010995           86 CFSDYTNARYNIYDRSGKIIPS-GVA----A----------DSYKKAVESAIANLK---NLEA----TNSNI-GEVIKA-  141 (496)
Q Consensus        86 ~~~~~~~~~~~~~~~~g~~~~~-~~~----~----------~~~~~~~~~~~~~~~---~~~~----~~~~~-~~~~~~-  141 (496)
                      ... .....+.+..++|..+.. ...    +          +.+.++.+.......   ....    ....+ ..+... 
T Consensus        80 ~~~-~~~~~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (493)
T TIGR02730        80 ETI-PDPVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKHP  158 (493)
T ss_pred             ccc-CCCccEEEECCCCeeEeeecCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhch
Confidence            221 111123334445533220 000    0          112222221111110   0000    00000 000000 


Q ss_pred             -----hhcCC----------CCCCChHHHHHHHHHhhcccc--ccCCc----ccccccCCcceeeeCcccHHHHHHHHHH
Q 010995          142 -----ATELP----------SSPKTPLELAIDFILHDFEMA--EVEPI----STYVDFGEREFLVADERGYAHLLYKMAE  200 (496)
Q Consensus       142 -----~~~~~----------~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~G~~~l~~~l~~  200 (496)
                           ...+.          .......+..+..........  ...+.    ..+... .........+|++.++++|.+
T Consensus       159 ~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~~~-~~~g~~~~~gG~~~l~~~L~~  237 (493)
T TIGR02730       159 LACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPMINAGMVFSDR-HYGGINYPKGGVGQIAESLVK  237 (493)
T ss_pred             hhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccCCCcccchhhhHHHhhccc-ccceEecCCChHHHHHHHHHH
Confidence                 00000          000000111111000000000  00000    011111 112334568899999999999


Q ss_pred             hhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCC
Q 010995          201 EFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDV  279 (496)
Q Consensus       201 ~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~  279 (496)
                      .+++      .|++|+++++|++|..+++++. |++.+|++++||.||+|+++..+...++. ...++......++++..
T Consensus       238 ~~~~------~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~  310 (493)
T TIGR02730       238 GLEK------HGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLK-AENLPKKEKNWQRNYVK  310 (493)
T ss_pred             HHHH------CCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCC-ccccchhhHHHHhhccC
Confidence            9988      7999999999999998877654 88888888999999999987655542332 12234333444455554


Q ss_pred             c-ceeEEEEEcCCCCCCCCCCCceEEeec-C--CCCcccccee----cc--ccCCCCcEEEEEeccccchhcccCC----
Q 010995          280 M-VYTKIFLKFPCKFWPCSPGKEFFIYAH-E--RRGYYTFWQH----ME--NAYPGSNILVVTLTNGESKRVEAQP----  345 (496)
Q Consensus       280 ~-~~~~v~l~~~~~~w~~~~~~~~~~~~~-~--~~~~~~~~~~----~~--~~~~~~~vl~~~~~~~~a~~~~~~~----  345 (496)
                      + +..++++.++.+.-+.......+...+ +  ......++.+    .+  ..++|..++.++.. .....|.+++    
T Consensus       311 s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~-~~~~~w~~~~~~~y  389 (493)
T TIGR02730       311 SPSFLSLHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTP-SSMEDWQGLSPKDY  389 (493)
T ss_pred             CCceEEEEEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecC-CChhhccCCCcHHH
Confidence            4 467889999874322211101111110 0  0000111111    11  12345555544432 2233343322    


Q ss_pred             ---cHHHHHHHHHHHHHhcCCCCCCCCeeE------ecccCCCCCCCcccCCCCCCCChHHH--HHHhCCCCcEEEcccc
Q 010995          346 ---DEETLKEAMEVLQDMFGPDIPNATDIL------VPRWWNNRFQRGSYSNYPIISDNQLV--NSIRAPVAGIFFTGEH  414 (496)
Q Consensus       346 ---~ee~~~~~~~~L~~~~~~~~~~~~~~~------~~rw~~~~~~~g~~~~~~~g~~~~~~--~~~~~p~~~l~~aGd~  414 (496)
                         .+++.+.+++.|++.++.-....+...      ..|+..  ...|+|...+-.......  +..++|++|||+||++
T Consensus       390 ~~~k~~~~~~il~~l~~~~p~l~~~I~~~~~~TP~t~~r~~~--~~~G~~G~~~~~~~~~~~~~~~~~t~i~gLyl~G~~  467 (493)
T TIGR02730       390 EAKKEADAERIIDRLEKIFPGLDSAIDYKEVGTPRTHRRFLG--RDSGTYGPIPRRTLPGLLPMPFNRTAIPGLYCVGDS  467 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHCCChhhcEEEEEeeCchhHHHHhC--CCCcccCCcccccccccccCCCCCCCCCCeEEecCc
Confidence               345778888888888742111121111      112211  113444211100000011  2356889999999999


Q ss_pred             ccCcCCccchHHHHHHHHHHHHHHHHH
Q 010995          415 TSERFNGYVHGGYLAGIDTGKAVVEKI  441 (496)
Q Consensus       415 ~~~~~~g~~egA~~SG~~aA~~il~~l  441 (496)
                      ++++  +++.||+.||..||++|+..+
T Consensus       468 ~~pG--~Gv~g~~~sG~~~a~~i~~~~  492 (493)
T TIGR02730       468 CFPG--QGLNAVAFSGFACAHRVAADL  492 (493)
T ss_pred             CCCC--CCHHHHHHHHHHHHHHHHhhc
Confidence            9763  589999999999999998764

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=99.95  E-value=9.7e-27  Score=225.99  Aligned_cols=405  Identities=17%  Similarity=0.182  Sum_probs=229.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeee-CCcEEeecceEEecCCCCCCChHHHHHHhcCCcc
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKF-GGVSVELGAGWIAGVGGKESNPVWELASKSGLRT   85 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~-~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~   85 (496)
                      .+|+|+|||+|||+||++|+++|+ +|||+|+++++||.+.|++. +|..+|+|-|.|++    .|.+++.++++++.+.
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~-~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~----~Y~n~~~ll~~~~~~~   75 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGY-DVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFG----CYYNLLTLLKELPIED   75 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC-ceEEEeccCccCceeeeeecCCCCeeeeeeEEech----hHHHHHHHhhhCCchh
Confidence            479999999999999999999999 79999999999999999885 68999999999999    9999999999999885


Q ss_pred             ccccCCCcceEE---EcCCCcc---------cChhHHHHHH-------HHHHHHH----------HHHhccccccchhHH
Q 010995           86 CFSDYTNARYNI---YDRSGKI---------IPSGVAADSY-------KKAVESA----------IANLKNLEATNSNIG  136 (496)
Q Consensus        86 ~~~~~~~~~~~~---~~~~g~~---------~~~~~~~~~~-------~~~~~~~----------~~~~~~~~~~~~~~~  136 (496)
                      ..+-.+. ...+   -...|..         .|.......+       .......          .+....+  ...++.
T Consensus        76 ~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~~el--d~~s~~  152 (485)
T COG3349          76 RLQLREH-TKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPRREKIRFVLRLGDAPIGADRSLREL--DKISFA  152 (485)
T ss_pred             eeehHhh-hhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCHHHHhHHhhccccccchhHHHHHHH--hcccHH
Confidence            5421111 0000   0111111         0110000000       0000000          0000111  112355


Q ss_pred             HHHHhhhcCCCCCCChHHHHHHHHHhhccccccCCcc--------cccccC--CcceeeeCccc-HHHHHHHHHHhhccC
Q 010995          137 EVIKAATELPSSPKTPLELAIDFILHDFEMAEVEPIS--------TYVDFG--EREFLVADERG-YAHLLYKMAEEFLST  205 (496)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~--~~~~~~~~~~G-~~~l~~~l~~~~~~~  205 (496)
                      +|+...    ..........+........+...+..+        .+....  .......++++ .+.++.++.+.+.+ 
T Consensus       153 d~l~~~----g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~~yi~~-  227 (485)
T COG3349         153 DWLKEK----GAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPE-  227 (485)
T ss_pred             HHHHHh----CCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhhhhccc-
Confidence            555531    111111111111111111000000000        000000  11111222333 44567777777776 


Q ss_pred             CCCCccccceeeCceeEEEEEcCC-----ceEEEeCCCc---EEEcCEEEEecChHHHhcCCcccCCCC-c-HHHHHHHh
Q 010995          206 SDGKILDNRLKLNKVVRELQHSRN-----GVTVKTEDGC---VYEANYVILSASIGVLQSDLISFKPPL-P-KWKTEAIE  275 (496)
Q Consensus       206 ~~~~~~g~~i~~~~~V~~I~~~~~-----~v~V~~~~G~---~~~ad~VI~A~p~~~l~~~li~~~p~l-~-~~~~~~i~  275 (496)
                           .|.+++++.+|+.|..+..     .+.+... +.   ...++.++.+.....+.+.    .|.. + ......+.
T Consensus       228 -----~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~~~~~~----~ps~W~~~~~f~~ly  297 (485)
T COG3349         228 -----RGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQRFKRD----LPSEWPKWSNFDGLY  297 (485)
T ss_pred             -----cCceeeccceeeeeeccccccccceEeeeec-CcceEeeehhhhhcccccchHhhc----Ccccccccccccccc
Confidence                 7999999999999987652     1223333 43   3456666666666666652    2221 1 22344566


Q ss_pred             hCCCcceeEEEEEcCCCCCCCCCC-CceE----EeecCCCCccccceec----cccCCCC-cEEEEEeccccchhcccCC
Q 010995          276 KCDVMVYTKIFLKFPCKFWPCSPG-KEFF----IYAHERRGYYTFWQHM----ENAYPGS-NILVVTLTNGESKRVEAQP  345 (496)
Q Consensus       276 ~~~~~~~~~v~l~~~~~~w~~~~~-~~~~----~~~~~~~~~~~~~~~~----~~~~~~~-~vl~~~~~~~~a~~~~~~~  345 (496)
                      .+...+..+++++|+...|..... ..++    .+..+.. ...++...    ....++. ..+.....  .+..|...+
T Consensus       298 ~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~dn~~~s~~~l-~~~~ad~~~~~~~y~e~g~~~~le~~~~--~~~~~~~~~  374 (485)
T COG3349         298 GLRLVPVITLHLRFDGWVTELTDRNQQFGIDNLLWSDDTL-GGVVADLALTSPDYVEPGAGCYLEKVLA--PGWPFLFES  374 (485)
T ss_pred             cccccceeEEEEeecCccccccccchhhhhhccccccccC-Cceeeeccccchhhccccchhhhhhhhc--ccccccccc
Confidence            677888899999998654332111 1111    1221111 11222211    0011222 22222222  345677778


Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCCCeeEecccCCCCCCCcccCCCCCCCChHHHHHHhCCCCcEEEccccccCcCCccchH
Q 010995          346 DEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHG  425 (496)
Q Consensus       346 ~ee~~~~~~~~L~~~~~~~~~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~eg  425 (496)
                      ++++.....+++..+++..........+.+=      ..+....+||. ..++|...+|++|++++|||+...+.++|||
T Consensus       375 ~~~~~a~~e~~~~~~vP~~~~a~~~~~~i~~------~q~~~~~~pgs-~~~rP~~~Tpv~N~~laGd~~~~~~~~smE~  447 (485)
T COG3349         375 DEAIVATFEKELYELVPSLAEAKLKSSVLVN------QQSLYGLAPGS-YHYRPEQKTPIPNLLLAGDYTKQPYLGSMEG  447 (485)
T ss_pred             hhhHHHHHHHHhhhcCCchhcccccccceec------cccccccCCCc-cccCCCCCCCccchhhccceeecCCcCccch
Confidence            9999999999999877533222222222111      22566678888 4788999999999999999998877789999


Q ss_pred             HHHHHHHHHHHHHHHHhcc
Q 010995          426 GYLAGIDTGKAVVEKIRKD  444 (496)
Q Consensus       426 A~~SG~~aA~~il~~l~~~  444 (496)
                      |..||++||+.|++.+...
T Consensus       448 A~~sGl~AA~~v~~~~~~~  466 (485)
T COG3349         448 ATLSGLLAANAILDNLGHH  466 (485)
T ss_pred             hhhhHHHHHHHHHHhhhhc
Confidence            9999999999999887643

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.92  E-value=3e-24  Score=218.45  Aligned_cols=239  Identities=20%  Similarity=0.253  Sum_probs=138.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcC-C
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSG-L   83 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lg-l   83 (496)
                      +++||||||||++||+||.+|+++|+ +|+||||++++||+++|.+.+|+.||.|++++..    ..  ...+.++++ +
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~G~-~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~~~~~~----~~--~~~~~~~l~~l   74 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARAGL-KVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLM----PD--PGPLFRELGNL   74 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHhCCC-EEEEEEecCCCCcceEEEeccceEeccCcceeec----Cc--hHHHHHHhccC
Confidence            57899999999999999999999999 6999999999999999999999999999988866    22  225555666 5


Q ss_pred             ccccccC--CCcceEEEcCCCcccCh-hHH---H-----------HHHHHHHHHHHHH----hcccc----c----cchh
Q 010995           84 RTCFSDY--TNARYNIYDRSGKIIPS-GVA---A-----------DSYKKAVESAIAN----LKNLE----A----TNSN  134 (496)
Q Consensus        84 ~~~~~~~--~~~~~~~~~~~g~~~~~-~~~---~-----------~~~~~~~~~~~~~----~~~~~----~----~~~~  134 (496)
                      ......+  ....+..+.++|..+.. ...   .           +.+..+.....+.    .....    .    ....
T Consensus        75 ~~~~l~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (487)
T COG1233          75 DADGLDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDGEALARYLRLLARLYELLAALLLAPPRSELLLVPDT  154 (487)
T ss_pred             cccceeeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhcCCCchhhhhhcccc
Confidence            4432111  12334455565554321 000   0           0111111111110    00000    0    0000


Q ss_pred             HHHHHHhhhcCC---------CCCCChHHHHHHHHHhhccccccCC--cccc-cccCCcceeeeCcccHHHHHHHHHHhh
Q 010995          135 IGEVIKAATELP---------SSPKTPLELAIDFILHDFEMAEVEP--ISTY-VDFGEREFLVADERGYAHLLYKMAEEF  202 (496)
Q Consensus       135 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~G~~~l~~~l~~~~  202 (496)
                      ...+........         ....+..+..+.+...........+  ...+ ............+||++.|+++|++.+
T Consensus       155 ~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~~~p~~~~a~~~~~~~~~~~~G~~~p~GG~~al~~aL~~~~  234 (487)
T COG1233         155 PERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYGGAPPSTPPALYLLLSHLGLSGGVFYPRGGMGALVDALAELA  234 (487)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhcccCCeeeeeCCHHHHHHHHHHHH
Confidence            111111000000         0000011111111100000000000  0111 112222344566899999999999999


Q ss_pred             ccCCCCCccccceeeCceeEEEEEcCCc-eEEEeCCCcEEEcCEEEEecChHHHh
Q 010995          203 LSTSDGKILDNRLKLNKVVRELQHSRNG-VTVKTEDGCVYEANYVILSASIGVLQ  256 (496)
Q Consensus       203 ~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~A~p~~~l~  256 (496)
                      ++      .|++|+++++|++|..++++ +++++.+|+.+++|.||+++.+....
T Consensus       235 ~~------~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~~~~~  283 (487)
T COG1233         235 RE------HGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADPALLA  283 (487)
T ss_pred             HH------cCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCchhhhh
Confidence            98      79999999999999998875 66888888789999999999884433

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=99.90  E-value=9.9e-22  Score=178.89  Aligned_cols=262  Identities=18%  Similarity=0.228  Sum_probs=163.6

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeee----eCCcEEeecceEEecCCCCCCChHHHHHH
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEK----FGGVSVELGAGWIAGVGGKESNPVWELAS   79 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~----~~g~~~d~G~~~~~~~~~~~~~~~~~l~~   79 (496)
                      ..+.+|+|||+|||||+|||.|+++.  +|||+|+.+++||+.+|..    .+|..+|+|.+....   ..|+++..|++
T Consensus         6 ~~r~~IAVIGsGisGLSAA~~Ls~rh--dVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~---~tYpnl~~Lf~   80 (447)
T COG2907           6 HPRRKIAVIGSGISGLSAAWLLSRRH--DVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNE---RTYPNLTRLFK   80 (447)
T ss_pred             CCCcceEEEcccchhhhhHHhhhccc--ceEEEeccccccCccceeeccccCCceeecceeEEecC---CCcchHHHHHH
Confidence            45789999999999999999999884  7999999999999999985    246789999998887   68999999999


Q ss_pred             hcCCccccccCCCcceEE-EcCCCcccCh-----hHH-------HHHHHHHHHHHHHHhc--c-----ccccchhHHHHH
Q 010995           80 KSGLRTCFSDYTNARYNI-YDRSGKIIPS-----GVA-------ADSYKKAVESAIANLK--N-----LEATNSNIGEVI  139 (496)
Q Consensus        80 ~lgl~~~~~~~~~~~~~~-~~~~g~~~~~-----~~~-------~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~  139 (496)
                      ++|.+......+   +.+ ++..|..+..     ++.       ...+..++....++..  .     ......++.+|+
T Consensus        81 ~iGv~t~as~Ms---f~v~~d~gglEy~g~tgl~~L~aqk~n~l~pRf~~mlaeiLrf~r~~~~~~d~~~~~~~tl~~~L  157 (447)
T COG2907          81 TIGVDTKASFMS---FSVSLDMGGLEYSGLTGLAGLLAQKRNLLRPRFPCMLAEILRFYRSDLAPSDNAGQGDTTLAQYL  157 (447)
T ss_pred             HcCCCCccccee---EEEEecCCceeeccCCCccchhhccccccchhHHHHHHHHHHHhhhhccchhhhcCCCccHHHHH
Confidence            999987653322   222 2222222221     111       1112222222211111  0     111122345555


Q ss_pred             HhhhcCCCCCC-----ChHHHHHHHHHhhccccccCCcc---------cccccCCcceeeeCcccHHHHHHHHHHhhccC
Q 010995          140 KAATELPSSPK-----TPLELAIDFILHDFEMAEVEPIS---------TYVDFGEREFLVADERGYAHLLYKMAEEFLST  205 (496)
Q Consensus       140 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~  205 (496)
                      .+..    .+.     -...+....+.....-....+..         ......+........||...-+++|+..    
T Consensus       158 ~~~~----f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~ggS~~yvq~laa~----  229 (447)
T COG2907         158 KQRN----FGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQRLAAD----  229 (447)
T ss_pred             HhcC----ccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHhccCceecCCCCceeEcccchHHHHHHHhcc----
Confidence            4310    000     00001111111000000000000         0001122223334578999999999988    


Q ss_pred             CCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEE
Q 010995          206 SDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKI  285 (496)
Q Consensus       206 ~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v  285 (496)
                           .+++|.++++|..|..-.+++.|+..+|++-++|+||+|+.+.+...++   +.+-| +.++.+..+.|.....|
T Consensus       230 -----~~~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~mL---~e~sp-~e~qll~a~~Ys~n~aV  300 (447)
T COG2907         230 -----IRGRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALALL---DEPSP-EERQLLGALRYSANTAV  300 (447)
T ss_pred             -----ccceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChHHHHHhc---CCCCH-HHHHHHHhhhhhhceeE
Confidence                 4678999999999999999999888889889999999999999987732   22223 45668999999998877


Q ss_pred             EEEcC
Q 010995          286 FLKFP  290 (496)
Q Consensus       286 ~l~~~  290 (496)
                      .....
T Consensus       301 lhtd~  305 (447)
T COG2907         301 LHTDA  305 (447)
T ss_pred             Eeecc
Confidence            66543

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=99.78  E-value=8e-18  Score=158.57  Aligned_cols=245  Identities=17%  Similarity=0.154  Sum_probs=137.9

Q ss_pred             eeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCCCcEEEcCEEEEecChHHHhcCCcccC
Q 010995          185 VADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDGCVYEANYVILSASIGVLQSDLISFK  263 (496)
Q Consensus       185 ~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~  263 (496)
                      .+..||++.+..++++.+++      .|++|.+++.|++|..+++++. |...||+++.++.||+++.+..+...++ -.
T Consensus       257 ~Yp~GG~Gavs~aia~~~~~------~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLl-p~  329 (561)
T KOG4254|consen  257 GYPRGGMGAVSFAIAEGAKR------AGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLL-PG  329 (561)
T ss_pred             cCCCCChhHHHHHHHHHHHh------ccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhC-CC
Confidence            35689999999999999998      7999999999999999987765 9999999999999999988877763233 23


Q ss_pred             CCCcHHHHHHHhhCCC-cceeE----EEEEcCCCCCCCCCCCceEEeec-C------------CCCc----ccccee---
Q 010995          264 PPLPKWKTEAIEKCDV-MVYTK----IFLKFPCKFWPCSPGKEFFIYAH-E------------RRGY----YTFWQH---  318 (496)
Q Consensus       264 p~l~~~~~~~i~~~~~-~~~~~----v~l~~~~~~w~~~~~~~~~~~~~-~------------~~~~----~~~~~~---  318 (496)
                      ..||++.  .++.+.+ .+..|    .++..+..--...|..++.+... +            ..+.    ..++.+   
T Consensus       330 e~LPeef--~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS  407 (561)
T KOG4254|consen  330 EALPEEF--VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPS  407 (561)
T ss_pred             ccCCchh--hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEeccc
Confidence            3466653  3444432 22222    23332221100012222222111 0            0010    011111   


Q ss_pred             -cc--ccCCCCcEEEEEeccccchhcccCC-------cHHHHHHHHHHHHHhcCCCCCCCCeeEe-cccCCCCCC---Cc
Q 010995          319 -ME--NAYPGSNILVVTLTNGESKRVEAQP-------DEETLKEAMEVLQDMFGPDIPNATDILV-PRWWNNRFQ---RG  384 (496)
Q Consensus       319 -~~--~~~~~~~vl~~~~~~~~a~~~~~~~-------~ee~~~~~~~~L~~~~~~~~~~~~~~~~-~rw~~~~~~---~g  384 (496)
                       .+  -.+++.+++..+..... ..|++..       .++..+.+++.+.++++.-...++...+ +--.+.+|.   +|
T Consensus       408 ~lDptlappg~Hvl~lf~~~t~-~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfsssv~~~dvgTP~t~qr~l~~~~G  486 (561)
T KOG4254|consen  408 SLDPTLAPPGKHVLHLFTQYTP-EEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSSSVESYDVGTPPTHQRFLGRPGG  486 (561)
T ss_pred             ccCCCcCCCCceEEEEeccCCc-cccccCCcccchHHHHHHHHHHHHHHHHHcCCccceEEEEecCCCchhhHHhcCCCC
Confidence             11  13466777776654322 3455443       3567788888888777421112221111 111111111   34


Q ss_pred             ccCCCCCCCCh--H-----HHHHHhCCCCcEEEccccccCcCCccchHHHHHHHHHHHHHHHHHhc
Q 010995          385 SYSNYPIISDN--Q-----LVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRK  443 (496)
Q Consensus       385 ~~~~~~~g~~~--~-----~~~~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~~  443 (496)
                      .+...+.+...  -     .....++|+++||+||+.+.++  |.+-+|-  |..+|...+.....
T Consensus       487 n~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPG--gGV~a~a--G~~~A~~a~~~~~~  548 (561)
T KOG4254|consen  487 NIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPG--GGVMAAA--GRLAAHSAILDRKL  548 (561)
T ss_pred             cccCcccccccccccCCccccccCCCCCCceEEecCCCCCC--CCccccc--hhHHHHHHhhhhhh
Confidence            43332222211  1     1223488999999999999873  3454443  88888887766543

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.76  E-value=7.5e-17  Score=161.81  Aligned_cols=71  Identities=25%  Similarity=0.393  Sum_probs=61.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHC----CCCcEEEEeeCCCCCeEEEeee--eCCcEEeecceEEecCCCCCCChHHHHH
Q 010995            5 SRSPVIIIGAGVSGISAGKILAEN----GIEDILILEASDRIGGRVRNEK--FGGVSVELGAGWIAGVGGKESNPVWELA   78 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~----G~~~V~vlEa~~~~GGr~~t~~--~~g~~~d~G~~~~~~~~~~~~~~~~~l~   78 (496)
                      .+.+|+|||||+|||+||++|++.    |. +|+|||+++++||++.+..  .+|+.++.|.+. ..    .+..+++++
T Consensus        21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~-~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~-~~----~y~~l~~ll   94 (576)
T PRK13977         21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGE-NITILEELDVPGGSLDGAGNPEKGYVARGGREM-EN----HFECLWDLF   94 (576)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHccCCCCC-cEEEEeCCCCCCCCccCcccccCCEEEECCCCc-cc----hHHHHHHHH
Confidence            457999999999999999999995    67 7999999999999999854  578989888774 44    788999999


Q ss_pred             Hhc
Q 010995           79 SKS   81 (496)
Q Consensus        79 ~~l   81 (496)
                      +++
T Consensus        95 ~~i   97 (576)
T PRK13977         95 RSI   97 (576)
T ss_pred             Hhc
Confidence            876

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=99.72  E-value=1.7e-15  Score=147.35  Aligned_cols=223  Identities=20%  Similarity=0.210  Sum_probs=131.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcE-EeecceEEecCCCCCCChHHHHHHhcC-C
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVS-VELGAGWIAGVGGKESNPVWELASKSG-L   83 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~-~d~G~~~~~~~~~~~~~~~~~l~~~lg-l   83 (496)
                      ++||+|||||++||++|+.|++.|. +|+|+|+++++||++.+...++.. .+.|+|+++.    ....+++++.++. .
T Consensus         1 ~~DvvIIGaG~aGlsaA~~La~~G~-~V~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t----~~~~v~~~~~~~~~~   75 (377)
T TIGR00031         1 MFDYIIVGAGLSGIVLANILAQLNK-RVLVVEKRNHIGGNCYDEVDETILFHQYGPHIFHT----NNQYVWDYISPFFEL   75 (377)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCCCCCceeeecCCCceEEeecceeEec----CcHHHHHHHHhhccc
Confidence            4699999999999999999999999 699999999999999997766655 4899999997    7788888888753 2


Q ss_pred             ccccccCCCcceEEEcCCCcccChhHHHHHHHH---------HHHHHHHHhccccccc-hhHHHHH-------Hhh----
Q 010995           84 RTCFSDYTNARYNIYDRSGKIIPSGVAADSYKK---------AVESAIANLKNLEATN-SNIGEVI-------KAA----  142 (496)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~~-------~~~----  142 (496)
                      .    .+... . ....+|+.++.+...+.+..         +.+.+........... ..++++.       +..    
T Consensus        76 ~----~~~~~-~-~~~~~g~~~~~P~~~~~i~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~G~~lye~  149 (377)
T TIGR00031        76 N----NYQHR-V-LALYNNLDLTLPFNFNQFRKLLGVKDAQELQNFFNAQFKYGDHVPLEELQEIADPDIQLLYQFLYQK  149 (377)
T ss_pred             c----ceeEE-E-EEEECCeEEccCCCHHHHHHhcccchHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            1    12211 1 22346666654332111111         1111111111000000 1111111       110    


Q ss_pred             hcCCCC----CCChHHHHHHHHHhhccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeC
Q 010995          143 TELPSS----PKTPLELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLN  218 (496)
Q Consensus       143 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~  218 (496)
                      ...+..    ..++.++..++.. .....    +..-..+....+...+++|+..++++|.+.         .+.+|++|
T Consensus       150 ff~~Yt~K~Wg~~p~el~~~~~~-RvP~~----~~~d~~yf~d~~q~~P~~Gyt~~~~~ml~~---------~~i~v~l~  215 (377)
T TIGR00031       150 VYKPYTVKQWGLPAEEIDPFVIG-RVPVV----LSEDSSYFPDRYQGLPKGGYTKLFEKMLDH---------PLIDVKLN  215 (377)
T ss_pred             hccccCceeeCCChHHCCHHHeE-ecceE----ecCCCCcccccccccccccHHHHHHHHHhc---------CCCEEEeC
Confidence            001111    1235555554443 11111    111011223345556789999999999987         68899999


Q ss_pred             ceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhc
Q 010995          219 KVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQS  257 (496)
Q Consensus       219 ~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~  257 (496)
                      +.+..++.+++++.+..  + .+. +.||.|.|+..+..
T Consensus       216 ~~~~~~~~~~~~~~~~~--~-~~~-~~vi~Tg~id~~f~  250 (377)
T TIGR00031       216 CHINLLKDKDSQLHFAN--K-AIR-KPVIYTGLIDQLFG  250 (377)
T ss_pred             Cccceeeccccceeecc--c-ccc-CcEEEecCchHHHh
Confidence            98888886555454432  2 333 88999999988743

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=99.71  E-value=2.9e-16  Score=156.38  Aligned_cols=228  Identities=18%  Similarity=0.310  Sum_probs=136.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeC--------------------CcEEeecceEEe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFG--------------------GVSVELGAGWIA   64 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~--------------------g~~~d~G~~~~~   64 (496)
                      +.+||||||+|++|+.+|..|+++|+ +|+++|++++.||+.+|.+..                    .+.+|+.++.+.
T Consensus         3 ~~~DViViGtGL~e~ilAa~Ls~~Gk-kVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~   81 (443)
T PTZ00363          3 ETYDVIVCGTGLKECILSGLLSVNGK-KVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIM   81 (443)
T ss_pred             CcceEEEECCChHHHHHHhhhhhCCC-EEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeee
Confidence            47999999999999999999999999 699999999999999997432                    244667777765


Q ss_pred             cCCCCCCChHHHHHHhcCCccccccCCCcc-eEEEcCCCcc--cChhHHHH-------HH-HHHHHHHHHHhcccc----
Q 010995           65 GVGGKESNPVWELASKSGLRTCFSDYTNAR-YNIYDRSGKI--IPSGVAAD-------SY-KKAVESAIANLKNLE----  129 (496)
Q Consensus        65 ~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~-~~~~~~~g~~--~~~~~~~~-------~~-~~~~~~~~~~~~~~~----  129 (496)
                      .     ...+..++.+.++.... ++.... ..++..+|+.  +|......       ++ +..+..+.....+..    
T Consensus        82 ~-----~G~lv~lL~~s~v~ryl-eF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l~kfl~~v~~~~~~~~  155 (443)
T PTZ00363         82 A-----SGELVKILLHTDVTRYL-EFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRCKNFLQYVSNYDENDP  155 (443)
T ss_pred             c-----CChHHHHHhhcCcccee-eeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHHHHHHHHHHhhccCCh
Confidence            4     46778888888887665 332221 2233245554  33222111       11 111111111111111    


Q ss_pred             -------ccchhHHHHHHhhhcCCCCCCChHHH---HHHHHHhh-cc-ccccCC-------cccccccCCcceeeeCccc
Q 010995          130 -------ATNSNIGEVIKAATELPSSPKTPLEL---AIDFILHD-FE-MAEVEP-------ISTYVDFGEREFLVADERG  190 (496)
Q Consensus       130 -------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~-~~~~~~-------~~~~~~~~~~~~~~~~~~G  190 (496)
                             ....++.+|++.+    ..+......   .+.....+ +. ......       ...+..++...+ .++.+|
T Consensus       156 ~~~~~~~~d~~T~~d~L~~~----~ls~~~~d~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~g~~p~-~yp~gG  230 (443)
T PTZ00363        156 ETHKGLNLKTMTMAQLYKKF----GLEDNTIDFVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRYGKSPF-IYPLYG  230 (443)
T ss_pred             hhhcccCcccCCHHHHHHHh----CCCHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhccCCcc-eeeCCC
Confidence                   1123456666541    111111111   11111000 00 000000       011123443333 445799


Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCC-c-eEEEeCCCcEEEcCEEEEec
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRN-G-VTVKTEDGCVYEANYVILSA  250 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~-~-v~V~~~~G~~~~ad~VI~A~  250 (496)
                      ++.|+++|++.+..      .|+++++|++|++|..+++ + +.|++.+|+++.||+||+..
T Consensus       231 ~g~L~qal~r~~a~------~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~  286 (443)
T PTZ00363        231 LGGLPQAFSRLCAI------YGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDP  286 (443)
T ss_pred             HHHHHHHHHHHHHH------cCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECc
Confidence            99999999988776      7999999999999998764 3 45888899999999999854

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=99.67  E-value=8e-17  Score=116.53  Aligned_cols=68  Identities=34%  Similarity=0.606  Sum_probs=60.5

Q ss_pred             EECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhc
Q 010995           11 IIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKS   81 (496)
Q Consensus        11 IIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~l   81 (496)
                      |||||+|||+||+.|+++|+ +|+|+|+++++||++.+...++..+|.|++++...  ..++++++++++|
T Consensus         1 IiGaG~sGl~aA~~L~~~g~-~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~~~~--~~~~~~~~l~~~L   68 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGY-RVTVFEKNDRLGGRARSFRIPGYRFDLGAHYFFPP--DDYPNLFRLLREL   68 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTS-EEEEEESSSSSSGGGCEEEETTEEEETSS-SEEET--TSCHHHHHHHHTT
T ss_pred             CEeeCHHHHHHHHHHHHCCC-cEEEEecCcccCcceeEEEECCEEEeeccEEEeCC--CCchHHHHHHcCC
Confidence            89999999999999999999 79999999999999999999999999999999872  1467889999875

...

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.55  E-value=3.3e-12  Score=127.89  Aligned_cols=166  Identities=18%  Similarity=0.239  Sum_probs=103.0

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHh
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASK   80 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~   80 (496)
                      |+...++||+|||||++||++|+.|+++|+ +|+|+|+.+.++-...     +    .+...+.     -.+...+++++
T Consensus         1 ~~~~~~~dV~IvGaG~aGl~~A~~La~~G~-~v~liE~~~~~~~~~~-----~----~~~r~~~-----l~~~~~~~l~~   65 (392)
T PRK08773          1 MSRRSRRDAVIVGGGVVGAACALALADAGL-SVALVEGREPPRWQAD-----Q----PDLRVYA-----FAADNAALLDR   65 (392)
T ss_pred             CCCCCCCCEEEECcCHHHHHHHHHHhcCCC-EEEEEeCCCCcccccC-----C----CCCEEEE-----ecHHHHHHHHH
Confidence            677788999999999999999999999999 6999999875421100     0    0111111     23456788899


Q ss_pred             cCCccccccC--C-CcceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHH
Q 010995           81 SGLRTCFSDY--T-NARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAI  157 (496)
Q Consensus        81 lgl~~~~~~~--~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (496)
                      +|+.......  . -....+++.++...                           ..    +.      .          
T Consensus        66 lGl~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~----~~------~----------   98 (392)
T PRK08773         66 LGVWPAVRAARAQPYRRMRVWDAGGGGE---------------------------LG----FD------A----------   98 (392)
T ss_pred             CCchhhhhHhhCCcccEEEEEeCCCCce---------------------------EE----ec------h----------
Confidence            9986554211  0 00111222111100                           00    00      0          


Q ss_pred             HHHHhhccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCC
Q 010995          158 DFILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTED  237 (496)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~  237 (496)
                               .   ..    ......+.+  .  ...+.+.|.+.+.+      .|++++++++|++|+.++++++|++.+
T Consensus        99 ---------~---~~----~~~~~~~~v--~--~~~l~~~L~~~~~~------~gv~i~~~~~v~~i~~~~~~v~v~~~~  152 (392)
T PRK08773         99 ---------D---TL----GREQLGWIV--E--NDLLVDRLWAALHA------AGVQLHCPARVVALEQDADRVRLRLDD  152 (392)
T ss_pred             ---------h---cc----CCCcCEEEE--E--hHHHHHHHHHHHHh------CCCEEEcCCeEEEEEecCCeEEEEECC
Confidence                     0   00    000001111  1  24566666666655      689999999999999988889998888


Q ss_pred             CcEEEcCEEEEecChHH
Q 010995          238 GCVYEANYVILSASIGV  254 (496)
Q Consensus       238 G~~~~ad~VI~A~p~~~  254 (496)
                      |+++++|.||.|.....
T Consensus       153 g~~~~a~~vV~AdG~~S  169 (392)
T PRK08773        153 GRRLEAALAIAADGAAS  169 (392)
T ss_pred             CCEEEeCEEEEecCCCc
Confidence            88899999999998754

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.54  E-value=4.1e-14  Score=133.48  Aligned_cols=57  Identities=14%  Similarity=0.269  Sum_probs=53.6

Q ss_pred             ccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecC
Q 010995          189 RGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSAS  251 (496)
Q Consensus       189 ~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p  251 (496)
                      ...+.+++.|.+++++      .|++|+++++|.+|++++.+..|.+.+|+++.||.+|+|+.
T Consensus       108 dkA~~Iv~~ll~~~~~------~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtG  164 (408)
T COG2081         108 DKASPIVDALLKELEA------LGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATG  164 (408)
T ss_pred             cchHHHHHHHHHHHHH------cCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecC
Confidence            6788999999999998      89999999999999999988999999998999999999986

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.49  E-value=1.6e-11  Score=122.49  Aligned_cols=306  Identities=17%  Similarity=0.197  Sum_probs=160.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC-CCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCC-
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS-DRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGL-   83 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~-~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl-   83 (496)
                      +.||+|||||++||++|..|+++|+ +|+|+|+. +..             .+.| ..+     .-.++..++++++|+ 
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~-~V~l~E~~~~~~-------------~~~~-r~~-----~l~~~~~~~L~~lG~~   61 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGL-DVTLLERAPREL-------------LERG-RGI-----ALSPNALRALERLGLW   61 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC-cEEEEccCcccc-------------ccCc-eee-----eecHhHHHHHHHcCCh
Confidence            6799999999999999999999999 79999997 111             0111 111     145678899999999 


Q ss_pred             ccccccCC-CcceEEEcCCCc-ccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHH
Q 010995           84 RTCFSDYT-NARYNIYDRSGK-IIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFIL  161 (496)
Q Consensus        84 ~~~~~~~~-~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (496)
                      +.....-. ......++.++. .+.                                      +..              
T Consensus        62 ~~i~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~--------------   89 (387)
T COG0654          62 DRLEALGVPPLHVMVVDDGGRRLLI--------------------------------------FDA--------------   89 (387)
T ss_pred             hhhhhccCCceeeEEEecCCceeEE--------------------------------------ecc--------------
Confidence            43321111 111111212221 000                                      000              


Q ss_pred             hhccccccCCcccccccC-CcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeC-CCc
Q 010995          162 HDFEMAEVEPISTYVDFG-EREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTE-DGC  239 (496)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~-~G~  239 (496)
                                    ...+ ....+..   ....+.+.|.+.+.+.     .+++++++++|+.++.+++.++|+.. +|+
T Consensus        90 --------------~~~~~~~~~~~~---~~~~l~~~L~~~~~~~-----~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~  147 (387)
T COG0654          90 --------------AELGRGALGYVV---PRSDLLNALLEAARAL-----PNVTLRFGAEVEAVEQDGDGVTVTLSFDGE  147 (387)
T ss_pred             --------------cccCCCcceEEe---EhHHHHHHHHHHHhhC-----CCcEEEcCceEEEEEEcCCceEEEEcCCCc
Confidence                          0000 1111111   2556777777776652     44899999999999999999888887 999


Q ss_pred             EEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcc-eeEEEEEcCCCCCCCCCCCceEEeecCCCCcccccee
Q 010995          240 VYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMV-YTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQH  318 (496)
Q Consensus       240 ~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~-~~~v~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~  318 (496)
                      +++||.||-|=..+...+..+. .+..        ....|.. ...+.+..+  .+..  ...+..+.+.  +.+.+.. 
T Consensus       148 ~~~a~llVgADG~~S~vR~~~~-~~~~--------~~~~y~~~~l~~~~~~~--~~~~--~~~~~~~~~~--~~~~~~p-  211 (387)
T COG0654         148 TLDADLLVGADGANSAVRRAAG-IAEF--------SGRDYGQTALVANVEPE--EPHE--GRAGERFTHA--GPFALLP-  211 (387)
T ss_pred             EEecCEEEECCCCchHHHHhcC-CCCc--------cCCCCCceEEEEEeecC--CCCC--CeEEEEecCC--CceEEEe-
Confidence            9999999999887665552221 1111        1111222 122222222  1111  1111122221  1111111 


Q ss_pred             ccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCCCCCCCCeeEecccCCCCCCCcccCCCCCCCChHHH
Q 010995          319 MENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLV  398 (496)
Q Consensus       319 ~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~  398 (496)
                         ..+....++.+.....+.....+++++.    .+.|.+.++...+ ........+..      .|+.   ..  ...
T Consensus       212 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~-~~~~~~~~~~~------~~pl---~~--~~a  272 (387)
T COG0654         212 ---LPDNRSSVVWSLPPGPAEDLQGLSDEEF----LRELQRRLGERDP-LGRVTLVSSRS------AFPL---SL--RVA  272 (387)
T ss_pred             ---cCCCceeEEEECChhhHHHHhcCCHHHH----HHHHHHhcCcccc-cceEEEccccc------cccc---cc--hhh
Confidence               1112233333333334555556666665    4556666654322 11122222211      2221   11  011


Q ss_pred             HHHhCCCCcEEEccccccCcCC--c-cchHHHHHHHHHHHHHHHHHh
Q 010995          399 NSIRAPVAGIFFTGEHTSERFN--G-YVHGGYLAGIDTGKAVVEKIR  442 (496)
Q Consensus       399 ~~~~~p~~~l~~aGd~~~~~~~--g-~~egA~~SG~~aA~~il~~l~  442 (496)
                      .....  ++++++||+.+..+|  | +++-|+.-+...|..+.+...
T Consensus       273 ~~~~~--~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~  317 (387)
T COG0654         273 ERYRR--GRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPR  317 (387)
T ss_pred             hheec--CcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhh
Confidence            11111  789999999987554  2 667777777777777766655

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.47  E-value=3.2e-11  Score=120.57  Aligned_cols=160  Identities=18%  Similarity=0.183  Sum_probs=97.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCcccc
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCF   87 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~~~   87 (496)
                      ||+|||||++||++|+.|+++|+ +|+|+|++..++-+.     .+  ++..+..       -.++...+++++|+....
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~-~v~v~Er~~~~~~~~-----~~--~~~~~~~-------l~~~~~~~l~~lGl~~~~   65 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGL-KIALIEATPAEAAAT-----PG--FDNRVSA-------LSAASIRLLEKLGVWDKI   65 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCC-EEEEEeCCCccccCC-----CC--CCcceee-------cCHHHHHHHHHCCchhhh
Confidence            79999999999999999999999 799999987654100     00  0101111       234567788899986554


Q ss_pred             cc-CC--CcceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHHhhc
Q 010995           88 SD-YT--NARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDF  164 (496)
Q Consensus        88 ~~-~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (496)
                      .. ..  .....++..++...                           .   .+...                       
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~---------------------------~---~~~~~-----------------------   92 (385)
T TIGR01988        66 EPDRAQPIRDIHVSDGGSFGA---------------------------L---HFDAD-----------------------   92 (385)
T ss_pred             hhhcCCCceEEEEEeCCCCce---------------------------E---Eechh-----------------------
Confidence            22 11  11122222222110                           0   00000                       


Q ss_pred             cccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccc-cceeeCceeEEEEEcCCceEEEeCCCcEEEc
Q 010995          165 EMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILD-NRLKLNKVVRELQHSRNGVTVKTEDGCVYEA  243 (496)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~a  243 (496)
                            ..    ......+.+    .-..+.+.|.+.+.+      .| ++|+++++|++|+.+++++.|++.+|+++++
T Consensus        93 ------~~----~~~~~~~~i----~r~~l~~~L~~~~~~------~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~  152 (385)
T TIGR01988        93 ------EI----GLEALGYVV----ENRVLQQALWERLQE------YPNVTLLCPARVVELPRHSDHVELTLDDGQQLRA  152 (385)
T ss_pred             ------hc----CCCccEEEE----EcHHHHHHHHHHHHh------CCCcEEecCCeEEEEEecCCeeEEEECCCCEEEe
Confidence                  00    000001111    123466666666654      45 8999999999999988889998889988999


Q ss_pred             CEEEEecChHHH
Q 010995          244 NYVILSASIGVL  255 (496)
Q Consensus       244 d~VI~A~p~~~l  255 (496)
                      |.||.|.+....
T Consensus       153 ~~vi~adG~~S~  164 (385)
T TIGR01988       153 RLLVGADGANSK  164 (385)
T ss_pred             eEEEEeCCCCCH
Confidence            999999876543

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.46  E-value=8.3e-11  Score=117.37  Aligned_cols=56  Identities=25%  Similarity=0.235  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      ...+.+.|.+.+..      .|++++.+++|++|+.+++++.|.+.+| ++.+|.||+|+...
T Consensus       144 p~~~~~~l~~~~~~------~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~  199 (380)
T TIGR01377       144 AEKALRALQELAEA------HGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAW  199 (380)
T ss_pred             HHHHHHHHHHHHHH------cCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcc
Confidence            34566666666555      6999999999999999888888888776 89999999999864

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.46  E-value=1.7e-11  Score=122.41  Aligned_cols=43  Identities=37%  Similarity=0.594  Sum_probs=39.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN   48 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t   48 (496)
                      .++||+|||||+||++||+.|+++|+ +|+|||+++.+|-+..+
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~-~VlvlEk~~~~G~k~~~   44 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGL-DVLVLEKGSEPGAKPCC   44 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCC-eEEEEecCCCCCCCccc
Confidence            47999999999999999999999999 79999999999876554

>PRK06847 hypothetical protein; Provisional

Probab=99.45  E-value=2.5e-11  Score=120.84  Aligned_cols=160  Identities=19%  Similarity=0.247  Sum_probs=98.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCc
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLR   84 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~   84 (496)
                      ++.||+|||||++||++|..|++.|+ +|+|+|+++.+..             .|.. +.     ..++..+.++++|+.
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~~g~-~v~v~E~~~~~~~-------------~g~g-~~-----l~~~~~~~l~~~gl~   62 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRRAGI-AVDLVEIDPEWRV-------------YGAG-IT-----LQGNALRALRELGVL   62 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhCCC-CEEEEecCCCCcc-------------CCce-ee-----ecHHHHHHHHHcCCH
Confidence            47899999999999999999999999 6999999875421             1111 11     234556778888875


Q ss_pred             cccccC--CCcceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHHh
Q 010995           85 TCFSDY--TNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILH  162 (496)
Q Consensus        85 ~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (496)
                      ......  ......+++.+|..+..                    .+     ...+..                      
T Consensus        63 ~~~~~~~~~~~~~~~~~~~g~~~~~--------------------~~-----~~~~~~----------------------   95 (375)
T PRK06847         63 DECLEAGFGFDGVDLFDPDGTLLAE--------------------LP-----TPRLAG----------------------   95 (375)
T ss_pred             HHHHHhCCCccceEEECCCCCEEEe--------------------cC-----cccccc----------------------
Confidence            433111  11112233333332100                    00     000000                      


Q ss_pred             hccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEE
Q 010995          163 DFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYE  242 (496)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~  242 (496)
                                   ..+... .. .   .-..+.+.|.+.+.+      .|++|+++++|++|+.+++++.|.+.+|+++.
T Consensus        96 -------------~~~~~~-~~-i---~r~~l~~~L~~~~~~------~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~  151 (375)
T PRK06847         96 -------------DDLPGG-GG-I---MRPALARILADAARA------AGADVRLGTTVTAIEQDDDGVTVTFSDGTTGR  151 (375)
T ss_pred             -------------cCCCCc-cc-C---cHHHHHHHHHHHHHH------hCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEE
Confidence                         000000 00 0   113455555555544      68899999999999988888888888898999


Q ss_pred             cCEEEEecChHHH
Q 010995          243 ANYVILSASIGVL  255 (496)
Q Consensus       243 ad~VI~A~p~~~l  255 (496)
                      +|.||.|.+....
T Consensus       152 ad~vI~AdG~~s~  164 (375)
T PRK06847        152 YDLVVGADGLYSK  164 (375)
T ss_pred             cCEEEECcCCCcc
Confidence            9999999987543

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.45  E-value=3e-13  Score=133.51  Aligned_cols=57  Identities=28%  Similarity=0.457  Sum_probs=42.7

Q ss_pred             ccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCc-eEEEeCCCcEEEcCEEEEecC
Q 010995          189 RGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNG-VTVKTEDGCVYEANYVILSAS  251 (496)
Q Consensus       189 ~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~A~p  251 (496)
                      .-...+++.|.+.+++      .|++|+++++|++|+.++++ +.|.+.++.++.||+||+|+.
T Consensus       106 ~~a~~Vv~~L~~~l~~------~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtG  163 (409)
T PF03486_consen  106 DKASSVVDALLEELKR------LGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATG  163 (409)
T ss_dssp             --HHHHHHHHHHHHHH------HT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE---
T ss_pred             CcHHHHHHHHHHHHHH------cCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecC
Confidence            4578899999888887      79999999999999998877 778886667999999999976

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.44  E-value=3.2e-11  Score=120.68  Aligned_cols=160  Identities=18%  Similarity=0.256  Sum_probs=97.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGL   83 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl   83 (496)
                      +..+||+|||||++||++|+.|+++|+ +|+|+|+.+.++.             ..+..       ...+-.++++++|+
T Consensus         5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~-~v~liE~~~~~~~-------------~r~~~-------l~~~s~~~l~~lgl   63 (388)
T PRK07494          5 KEHTDIAVIGGGPAGLAAAIALARAGA-SVALVAPEPPYAD-------------LRTTA-------LLGPSIRFLERLGL   63 (388)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCC-eEEEEeCCCCCCC-------------cchhh-------CcHHHHHHHHHhCc
Confidence            356899999999999999999999999 6999999875410             00001       12245678888887


Q ss_pred             ccccccCCC--cceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHH
Q 010995           84 RTCFSDYTN--ARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFIL  161 (496)
Q Consensus        84 ~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (496)
                      .........  ....+++.+|..+....                     ..      +..                    
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~---------------------~~------~~~--------------------   96 (388)
T PRK07494         64 WARLAPHAAPLQSMRIVDATGRLIRAPE---------------------VR------FRA--------------------   96 (388)
T ss_pred             hhhhHhhcceeeEEEEEeCCCCCCCCce---------------------EE------EcH--------------------
Confidence            654321111  11223333332210000                     00      000                    


Q ss_pred             hhccccccCCcccccccCCcc-eeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcE
Q 010995          162 HDFEMAEVEPISTYVDFGERE-FLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCV  240 (496)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~  240 (496)
                                    ...+... .+.. .  ...+.+.|.+.+.+      .++..+++++|++++.++++++|++.+|++
T Consensus        97 --------------~~~~~~~~g~~i-~--~~~l~~~L~~~~~~------~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~  153 (388)
T PRK07494         97 --------------AEIGEDAFGYNI-P--NWLLNRALEARVAE------LPNITRFGDEAESVRPREDEVTVTLADGTT  153 (388)
T ss_pred             --------------HhcCCCccEEEe-E--hHHHHHHHHHHHhc------CCCcEEECCeeEEEEEcCCeEEEEECCCCE
Confidence                          0000000 1111 1  23466666666554      344448899999999998999999888889


Q ss_pred             EEcCEEEEecChHH
Q 010995          241 YEANYVILSASIGV  254 (496)
Q Consensus       241 ~~ad~VI~A~p~~~  254 (496)
                      ++||.||.|.....
T Consensus       154 ~~a~~vI~AdG~~S  167 (388)
T PRK07494        154 LSARLVVGADGRNS  167 (388)
T ss_pred             EEEeEEEEecCCCc
Confidence            99999999988754

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.44  E-value=2.6e-11  Score=122.23  Aligned_cols=43  Identities=33%  Similarity=0.611  Sum_probs=38.2

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR   45 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr   45 (496)
                      |++ .++||+|||||+||++||+.|+++|+ +|+|+|+.+.+|..
T Consensus         1 m~~-~~~DViIVGaGpAG~~aA~~La~~G~-~V~llEr~~~~g~k   43 (428)
T PRK10157          1 MSE-DIFDAIIVGAGLAGSVAALVLAREGA-QVLVIERGNSAGAK   43 (428)
T ss_pred             CCc-ccCcEEEECcCHHHHHHHHHHHhCCC-eEEEEEcCCCCCCc
Confidence            543 57999999999999999999999999 69999999887653

>PRK09126 hypothetical protein; Provisional

Probab=99.44  E-value=5.2e-11  Score=119.31  Aligned_cols=45  Identities=16%  Similarity=0.109  Sum_probs=39.9

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVL  255 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l  255 (496)
                      .|++|+++++|++++.+++.+.|++.+|++++||.||.|.+....
T Consensus       124 ~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~  168 (392)
T PRK09126        124 DGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSA  168 (392)
T ss_pred             CCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCch
Confidence            589999999999999888888888888889999999999987543

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.44  E-value=6.8e-13  Score=131.09  Aligned_cols=58  Identities=24%  Similarity=0.243  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCCCcEEEcCEEEEecChHHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDGCVYEANYVILSASIGVL  255 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~A~p~~~l  255 (496)
                      ...+++.|.+.+++      .|++|+++++|++|..++++|+ |.+.+|+ +.||+||+|+.+...
T Consensus       146 ~~~l~~~l~~~~~~------~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~  204 (358)
T PF01266_consen  146 PRRLIQALAAEAQR------AGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSP  204 (358)
T ss_dssp             HHHHHHHHHHHHHH------TT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHH
T ss_pred             ccchhhhhHHHHHH------hhhhccccccccchhhcccccccccccccc-cccceeEecccccce
Confidence            78899999988877      7999999999999999999998 9999985 999999999987543

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.44  E-value=7.8e-11  Score=118.98  Aligned_cols=162  Identities=17%  Similarity=0.167  Sum_probs=96.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGL   83 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl   83 (496)
                      +..+||+|||||++||++|..|+++|+ +|+|+|+++...-.           ..|... .     -..+..++++++|+
T Consensus        16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~~~~-----------~~g~~~-~-----l~~~~~~~L~~lGl   77 (415)
T PRK07364         16 SLTYDVAIVGGGIVGLTLAAALKDSGL-RIALIEAQPAEAAA-----------AKGQAY-A-----LSLLSARIFEGIGV   77 (415)
T ss_pred             ccccCEEEECcCHHHHHHHHHHhcCCC-EEEEEecCCccccC-----------CCCcEE-E-----echHHHHHHHHCCh
Confidence            346899999999999999999999999 79999998754210           011111 1     22356788889998


Q ss_pred             ccccccCCCc--ceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHH
Q 010995           84 RTCFSDYTNA--RYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFIL  161 (496)
Q Consensus        84 ~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (496)
                      ..........  ...+++.++...                           .   .+..                     
T Consensus        78 ~~~l~~~~~~~~~~~~~~~~~~~~---------------------------~---~~~~---------------------  106 (415)
T PRK07364         78 WEKILPQIGKFRQIRLSDADYPGV---------------------------V---KFQP---------------------  106 (415)
T ss_pred             hhhhHhhcCCccEEEEEeCCCCce---------------------------e---eecc---------------------
Confidence            6554221110  011111111100                           0   0000                     


Q ss_pred             hhccccccCCcccccccCC-cceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCC-C-
Q 010995          162 HDFEMAEVEPISTYVDFGE-REFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTED-G-  238 (496)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~-G-  238 (496)
                                    ..... ...+...   ...+.+.|.+.+.+.     .|++++++++|++|+.+++++.|++.+ + 
T Consensus       107 --------------~~~~~~~~~~~~~---~~~l~~~L~~~~~~~-----~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~  164 (415)
T PRK07364        107 --------------TDLGTEALGYVGE---HQVLLEALQEFLQSC-----PNITWLCPAEVVSVEYQQDAATVTLEIEGK  164 (415)
T ss_pred             --------------ccCCCCccEEEEe---cHHHHHHHHHHHhcC-----CCcEEEcCCeeEEEEecCCeeEEEEccCCc
Confidence                          00000 0011111   124556666655442     478999999999999888888777653 2 


Q ss_pred             -cEEEcCEEEEecChHHHh
Q 010995          239 -CVYEANYVILSASIGVLQ  256 (496)
Q Consensus       239 -~~~~ad~VI~A~p~~~l~  256 (496)
                       .+++||.||.|.......
T Consensus       165 ~~~i~adlvIgADG~~S~v  183 (415)
T PRK07364        165 QQTLQSKLVVAADGARSPI  183 (415)
T ss_pred             ceEEeeeEEEEeCCCCchh
Confidence             369999999998865543

>PRK10015 oxidoreductase; Provisional

Probab=99.43  E-value=1.2e-10  Score=117.35  Aligned_cols=42  Identities=36%  Similarity=0.692  Sum_probs=37.0

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      |++ .++||+|||||+||++||+.|+++|+ +|+|+|+.+.+|-
T Consensus         1 m~~-~~~DViIVGgGpAG~~aA~~LA~~G~-~VlliEr~~~~g~   42 (429)
T PRK10015          1 MSD-DKFDAIVVGAGVAGSVAALVMARAGL-DVLVIERGDSAGC   42 (429)
T ss_pred             CCc-cccCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCCCCc
Confidence            543 56999999999999999999999999 6999999887653

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.42  E-value=5.3e-11  Score=119.70  Aligned_cols=167  Identities=16%  Similarity=0.183  Sum_probs=100.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCcc
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRT   85 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~   85 (496)
                      .+||+|||||++||++|+.|+++|+ +|+|+|+.+..++......  .. ...+   . .    -.++..++++++|+..
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~~~~~~~~~~~--~~-~~r~---~-~----l~~~~~~~L~~lGl~~   69 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGL-EVLLLDGGPLSVKPFDPQA--PF-EPRV---S-A----LSAASQRILERLGAWD   69 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCC-EEEEEcCCCccccccccCC--CC-Cccc---h-h----hhHHHHHHHHHCChhh
Confidence            5799999999999999999999999 7999999864321111000  00 0001   0 1    3456778999999865


Q ss_pred             cccc--C-CCcceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHHh
Q 010995           86 CFSD--Y-TNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILH  162 (496)
Q Consensus        86 ~~~~--~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (496)
                      ....  . ......+++.+|...                           .          .+..               
T Consensus        70 ~l~~~~~~~~~~~~~~~~~~~~~---------------------------~----------~~~~---------------   97 (405)
T PRK05714         70 GIAARRASPYSEMQVWDGSGTGQ---------------------------I----------HFSA---------------   97 (405)
T ss_pred             hhhHhhCccceeEEEEcCCCCce---------------------------E----------Eecc---------------
Confidence            4321  0 011112222222100                           0          0000               


Q ss_pred             hccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEE
Q 010995          163 DFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYE  242 (496)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~  242 (496)
                            . ..    ......+.+  .  ...+.+.|.+.+.+      .|++|+++++|++|+.+++++.|++.+|++++
T Consensus        98 ------~-~~----~~~~~g~~i--~--~~~l~~~L~~~~~~------~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~  156 (405)
T PRK05714         98 ------A-SV----HAEVLGHIV--E--NRVVQDALLERLHD------SDIGLLANARLEQMRRSGDDWLLTLADGRQLR  156 (405)
T ss_pred             ------c-cc----CCCccEEEE--E--hHHHHHHHHHHHhc------CCCEEEcCCEEEEEEEcCCeEEEEECCCCEEE
Confidence                  0 00    000000111  1  23456666666655      68899999999999998888999888888899


Q ss_pred             cCEEEEecChHHHhc
Q 010995          243 ANYVILSASIGVLQS  257 (496)
Q Consensus       243 ad~VI~A~p~~~l~~  257 (496)
                      ||.||.|.......+
T Consensus       157 a~~vVgAdG~~S~vR  171 (405)
T PRK05714        157 APLVVAADGANSAVR  171 (405)
T ss_pred             eCEEEEecCCCchhH
Confidence            999999998755444

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.40  E-value=8.9e-11  Score=117.20  Aligned_cols=58  Identities=16%  Similarity=0.145  Sum_probs=47.3

Q ss_pred             HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995          192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      ..+.+.|.+.+.+.     .|++++++++|++|..++++++|++.+|+++.||.||.|.+...
T Consensus       105 ~~l~~~L~~~~~~~-----~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S  162 (382)
T TIGR01984       105 ADLGQALLSRLALL-----TNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS  162 (382)
T ss_pred             HHHHHHHHHHHHhC-----CCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence            45666666665541     38999999999999988888999888888899999999998764

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK06184 hypothetical protein; Provisional

Probab=99.40  E-value=1.7e-10  Score=119.07  Aligned_cols=165  Identities=17%  Similarity=0.227  Sum_probs=98.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCc
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLR   84 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~   84 (496)
                      +++||+|||||++||++|..|+++|+ +|+|+|+.+.+.-..+            +..       -.++..++++++|+.
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~Gi-~v~viE~~~~~~~~~r------------a~~-------l~~~~~e~l~~lGl~   61 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARRGV-SFRLIEKAPEPFPGSR------------GKG-------IQPRTQEVFDDLGVL   61 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCCCCCcCcc------------cee-------ecHHHHHHHHHcCcH
Confidence            46899999999999999999999999 6999999875421000            111       235678899999987


Q ss_pred             cccccCCC--cceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHHh
Q 010995           85 TCFSDYTN--ARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILH  162 (496)
Q Consensus        85 ~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (496)
                      ........  ....++..++.....                             .+...   ....              
T Consensus        62 ~~l~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~---~~~~--------------   95 (502)
T PRK06184         62 DRVVAAGGLYPPMRIYRDDGSVAES-----------------------------DMFAH---LEPT--------------   95 (502)
T ss_pred             HHHHhcCccccceeEEeCCceEEEe-----------------------------ecccc---ccCC--------------
Confidence            55422110  011122222221000                             00000   0000              


Q ss_pred             hccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEe---CCCc
Q 010995          163 DFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKT---EDGC  239 (496)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~---~~G~  239 (496)
                              ..   ..+.  ..+...+   ..+-+.|.+.+.+      .|++|+++++|++|+.++++|+++.   .+++
T Consensus        96 --------~~---~~~~--~~~~i~q---~~le~~L~~~l~~------~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~  153 (502)
T PRK06184         96 --------PD---EPYP--LPLMVPQ---WRTERILRERLAE------LGHRVEFGCELVGFEQDADGVTARVAGPAGEE  153 (502)
T ss_pred             --------CC---CCCC--cceecCH---HHHHHHHHHHHHH------CCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeE
Confidence                    00   0000  0011111   2233444444444      5899999999999999888888765   5567


Q ss_pred             EEEcCEEEEecChHHHhc
Q 010995          240 VYEANYVILSASIGVLQS  257 (496)
Q Consensus       240 ~~~ad~VI~A~p~~~l~~  257 (496)
                      +++||+||.|.......+
T Consensus       154 ~i~a~~vVgADG~~S~vR  171 (502)
T PRK06184        154 TVRARYLVGADGGRSFVR  171 (502)
T ss_pred             EEEeCEEEECCCCchHHH
Confidence            899999999998876544

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.39  E-value=5.9e-12  Score=108.61  Aligned_cols=68  Identities=31%  Similarity=0.425  Sum_probs=53.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCcc
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRT   85 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~   85 (496)
                      ..||+|||||+|||+|||+|+++|. +|+|+|++-.+||-+.          .|++.|+.+.  -..+...+++++|++.
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~-kV~i~E~~ls~GGG~w----------~GGmlf~~iV--v~~~a~~iL~e~gI~y   96 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGL-KVAIFERKLSFGGGIW----------GGGMLFNKIV--VREEADEILDEFGIRY   96 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCc-eEEEEEeecccCCccc----------ccccccceee--ecchHHHHHHHhCCcc
Confidence            4699999999999999999999999 6999999999999665          3555555422  3456667788888753


Q ss_pred             c
Q 010995           86 C   86 (496)
Q Consensus        86 ~   86 (496)
                      .
T Consensus        97 e   97 (262)
T COG1635          97 E   97 (262)
T ss_pred             e
Confidence            3

>PRK07045 putative monooxygenase; Reviewed

Probab=99.39  E-value=1.6e-10  Score=115.63  Aligned_cols=160  Identities=15%  Similarity=0.236  Sum_probs=97.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCc
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLR   84 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~   84 (496)
                      .++||+|||||++||+||..|+++|+ +|+|+|+.+.+-      ..      .|+..+       .++..++++++|+.
T Consensus         4 ~~~~V~IiGgGpaGl~~A~~L~~~G~-~v~v~E~~~~~~------~~------~~~~~l-------~~~~~~~L~~lGl~   63 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGARGH-SVTVVERAARNR------AQ------NGADLL-------KPSGIGVVRAMGLL   63 (388)
T ss_pred             ceeEEEEECCcHHHHHHHHHHHhcCC-cEEEEeCCCccc------CC------Cccccc-------CccHHHHHHHcCCH
Confidence            56899999999999999999999999 699999987541      00      012222       23456688899986


Q ss_pred             cccccCCC---cceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHH
Q 010995           85 TCFSDYTN---ARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFIL  161 (496)
Q Consensus        85 ~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (496)
                      ........   ....++ .+|..+..                                     +..              
T Consensus        64 ~~~~~~~~~~~~~~~~~-~~g~~~~~-------------------------------------~~~--------------   91 (388)
T PRK07045         64 DDVFAAGGLRRDAMRLY-HDKELIAS-------------------------------------LDY--------------   91 (388)
T ss_pred             HHHHhcccccccceEEe-cCCcEEEE-------------------------------------ecC--------------
Confidence            55421110   001111 12221000                                     000              


Q ss_pred             hhccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCc--eEEEeCCCc
Q 010995          162 HDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNG--VTVKTEDGC  239 (496)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~--v~V~~~~G~  239 (496)
                                    .......+.....  -..|.+.|.+.+...     .|++++++++|++|+.++++  +.|++.+|+
T Consensus        92 --------------~~~~~~g~~~~i~--r~~l~~~L~~~~~~~-----~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~  150 (388)
T PRK07045         92 --------------RSASALGYFILIP--CEQLRRLLLAKLDGL-----PNVRLRFETSIERIERDADGTVTSVTLSDGE  150 (388)
T ss_pred             --------------CccccCCceEEcc--HHHHHHHHHHHHhcC-----CCeeEEeCCEEEEEEECCCCcEEEEEeCCCC
Confidence                          0000001111111  234555566555332     58899999999999987665  358888888


Q ss_pred             EEEcCEEEEecChHHHhc
Q 010995          240 VYEANYVILSASIGVLQS  257 (496)
Q Consensus       240 ~~~ad~VI~A~p~~~l~~  257 (496)
                      ++.+|.||.|-+.....+
T Consensus       151 ~~~~~~vIgADG~~S~vR  168 (388)
T PRK07045        151 RVAPTVLVGADGARSMIR  168 (388)
T ss_pred             EEECCEEEECCCCChHHH
Confidence            999999999998766544

>PRK08013 oxidoreductase; Provisional

Probab=99.39  E-value=1.9e-10  Score=115.30  Aligned_cols=166  Identities=13%  Similarity=0.166  Sum_probs=99.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCcc
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRT   85 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~   85 (496)
                      .+||+|||||++||++|..|+++|+ +|+|+|+++.+.-      ..+...+.-+..       -.+...++++++|+..
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~-~v~viE~~~~~~~------~~g~~~~~r~~~-------l~~~s~~~L~~lGl~~   68 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGL-RVAVLEQRVPEPL------AADAPPALRVSA-------INAASEKLLTRLGVWQ   68 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCC-EEEEEeCCCCccc------ccCCCCCceeee-------cchhHHHHHHHcCCch
Confidence            5899999999999999999999999 6999999875321      001000111111       2345788999999865


Q ss_pred             ccccC---CCcceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHHh
Q 010995           86 CFSDY---TNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILH  162 (496)
Q Consensus        86 ~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (496)
                      .....   ......+++.+...                           ...    +..                     
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~----~~~---------------------   96 (400)
T PRK08013         69 DILARRASCYHGMEVWDKDSFG---------------------------RIA----FDD---------------------   96 (400)
T ss_pred             hhhhhcCccccEEEEEeCCCCc---------------------------eEE----Ecc---------------------
Confidence            54211   00111122111000                           000    000                     


Q ss_pred             hccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEE
Q 010995          163 DFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYE  242 (496)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~  242 (496)
                             ..    .......+.+ .   -..|.+.|.+.+.+.     .|++++++++|++|+.+++++.|+..+|++++
T Consensus        97 -------~~----~~~~~~~~~i-~---r~~l~~~L~~~~~~~-----~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~  156 (400)
T PRK08013         97 -------QS----MGYSHLGHII-E---NSVIHYALWQKAQQS-----SDITLLAPAELQQVAWGENEAFLTLKDGSMLT  156 (400)
T ss_pred             -------cc----cCCCccEEEE-E---hHHHHHHHHHHHhcC-----CCcEEEcCCeeEEEEecCCeEEEEEcCCCEEE
Confidence                   00    0000001111 1   223555555554432     47899999999999998888999888898999


Q ss_pred             cCEEEEecChHHHhc
Q 010995          243 ANYVILSASIGVLQS  257 (496)
Q Consensus       243 ad~VI~A~p~~~l~~  257 (496)
                      ||.||-|-..+...+
T Consensus       157 a~lvVgADG~~S~vR  171 (400)
T PRK08013        157 ARLVVGADGANSWLR  171 (400)
T ss_pred             eeEEEEeCCCCcHHH
Confidence            999999988765544

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.39  E-value=1.6e-10  Score=116.25  Aligned_cols=57  Identities=23%  Similarity=0.316  Sum_probs=47.2

Q ss_pred             HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995          192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      ..+.+.|.+.+.+      .|++++++++|++|+.+++++.|++.+|++++||.||.|.+...
T Consensus       111 ~~l~~~L~~~~~~------~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S  167 (403)
T PRK07333        111 RVLINALRKRAEA------LGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARS  167 (403)
T ss_pred             HHHHHHHHHHHHh------CCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCCh
Confidence            4566666666554      68999999999999998888989888888899999999987643

>PRK07236 hypothetical protein; Provisional

Probab=99.38  E-value=1.3e-11  Score=123.32  Aligned_cols=155  Identities=19%  Similarity=0.264  Sum_probs=101.6

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHh
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASK   80 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~   80 (496)
                      |+..+..+|+|||||++||++|..|+++|+ +|+|+|+++..-      .      ..|.. +.     ..++..+++++
T Consensus         1 ~~~~~~~~ViIVGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~~------~------~~g~g-i~-----l~~~~~~~l~~   61 (386)
T PRK07236          1 MTHMSGPRAVVIGGSLGGLFAALLLRRAGW-DVDVFERSPTEL------D------GRGAG-IV-----LQPELLRALAE   61 (386)
T ss_pred             CCCCCCCeEEEECCCHHHHHHHHHHHhCCC-CEEEEecCCCCc------C------CCCce-eE-----eCHHHHHHHHH
Confidence            677788999999999999999999999999 699999986420      0      01111 11     23468889999


Q ss_pred             cCCccccccCC--CcceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHH
Q 010995           81 SGLRTCFSDYT--NARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAID  158 (496)
Q Consensus        81 lgl~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (496)
                      +|+.... ...  .....+++.+|..+..                                                   
T Consensus        62 lg~~~~~-~~~~~~~~~~~~~~~g~~~~~---------------------------------------------------   89 (386)
T PRK07236         62 AGVALPA-DIGVPSRERIYLDRDGRVVQR---------------------------------------------------   89 (386)
T ss_pred             cCCCccc-ccccCccceEEEeCCCCEeec---------------------------------------------------
Confidence            9986432 110  0011122222221000                                                   


Q ss_pred             HHHhhccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCC
Q 010995          159 FILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDG  238 (496)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G  238 (496)
                                       .....  .    ..+...+.+.|.+.+        .+.+|+++++|++|+.++++|+|++.+|
T Consensus        90 -----------------~~~~~--~----~~~~~~l~~~L~~~~--------~~~~i~~~~~v~~i~~~~~~v~v~~~~g  138 (386)
T PRK07236         90 -----------------RPMPQ--T----QTSWNVLYRALRAAF--------PAERYHLGETLVGFEQDGDRVTARFADG  138 (386)
T ss_pred             -----------------cCCCc--c----ccCHHHHHHHHHHhC--------CCcEEEcCCEEEEEEecCCeEEEEECCC
Confidence                             00000  0    012445666666654        3567999999999999888899999999


Q ss_pred             cEEEcCEEEEecChHHHhc
Q 010995          239 CVYEANYVILSASIGVLQS  257 (496)
Q Consensus       239 ~~~~ad~VI~A~p~~~l~~  257 (496)
                      ++++||.||.|-..+...+
T Consensus       139 ~~~~ad~vIgADG~~S~vR  157 (386)
T PRK07236        139 RRETADLLVGADGGRSTVR  157 (386)
T ss_pred             CEEEeCEEEECCCCCchHH
Confidence            9999999999977655443

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.38  E-value=8.1e-12  Score=124.95  Aligned_cols=57  Identities=32%  Similarity=0.411  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      ...+.+.|.+.+.+      .|++++++++|++|+.+++++.|.+.+| ++.||.||+|++...
T Consensus       148 ~~~l~~aL~~~~~~------~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s  204 (393)
T PRK11728        148 YRAVAEAMAELIQA------RGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMS  204 (393)
T ss_pred             HHHHHHHHHHHHHh------CCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcch
Confidence            57788888888776      7999999999999998888888888777 899999999998753

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=99.38  E-value=2.5e-10  Score=114.37  Aligned_cols=58  Identities=17%  Similarity=0.181  Sum_probs=45.5

Q ss_pred             HHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHh
Q 010995          194 LLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQ  256 (496)
Q Consensus       194 l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~  256 (496)
                      +.+.|.+.+.+.     .|++++++++|+++..+++++.|++.+|++++||.||.|.......
T Consensus       114 l~~~L~~~~~~~-----~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~v  171 (391)
T PRK08020        114 LQLALWQALEAH-----PNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQV  171 (391)
T ss_pred             HHHHHHHHHHcC-----CCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCchh
Confidence            444555544431     4889999999999998888888888888899999999999875543

>PRK07588 hypothetical protein; Provisional

Probab=99.37  E-value=3.1e-10  Score=113.58  Aligned_cols=159  Identities=18%  Similarity=0.208  Sum_probs=97.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCccc
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTC   86 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~~   86 (496)
                      .||+|||||++||++|..|+++|+ +|+|+|+.+...       ..      | ..+.     ..++-.++++++|+...
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~-~v~v~E~~~~~~-------~~------g-~~~~-----l~~~~~~~l~~lGl~~~   60 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGH-EPTLIERAPELR-------TG------G-YMVD-----FWGVGYEVAKRMGITDQ   60 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCC-ceEEEeCCCCcc-------CC------C-eEEe-----ccCcHHHHHHHcCCHHH
Confidence            379999999999999999999999 699999976431       00      1 1111     22345678888998654


Q ss_pred             cccCC--CcceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHHhhc
Q 010995           87 FSDYT--NARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDF  164 (496)
Q Consensus        87 ~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (496)
                      .....  -....+++.+|..+..                         .....+.                         
T Consensus        61 l~~~~~~~~~~~~~~~~g~~~~~-------------------------~~~~~~~-------------------------   90 (391)
T PRK07588         61 LREAGYQIEHVRSVDPTGRRKAD-------------------------LNVDSFR-------------------------   90 (391)
T ss_pred             HHhccCCccceEEEcCCCCEEEE-------------------------ecHHHcc-------------------------
Confidence            32111  1112233333332100                         0000000                         


Q ss_pred             cccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcC
Q 010995          165 EMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEAN  244 (496)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad  244 (496)
                                 ..++.. ++...   -..|.+.|.+.+.       .|++|+++++|++|+.++++|+|++.+|+++++|
T Consensus        91 -----------~~~g~~-~~~i~---r~~l~~~L~~~~~-------~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d  148 (391)
T PRK07588         91 -----------RMVGDD-FTSLP---RGDLAAAIYTAID-------GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFD  148 (391)
T ss_pred             -----------ccCCCc-eEEEE---HHHHHHHHHHhhh-------cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeC
Confidence                       001111 11111   2344445544432       4689999999999999989999999999889999


Q ss_pred             EEEEecChHHHhc
Q 010995          245 YVILSASIGVLQS  257 (496)
Q Consensus       245 ~VI~A~p~~~l~~  257 (496)
                      .||.|-+.....+
T Consensus       149 ~vIgADG~~S~vR  161 (391)
T PRK07588        149 LVIGADGLHSHVR  161 (391)
T ss_pred             EEEECCCCCccch
Confidence            9999998765544

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=99.36  E-value=2.5e-10  Score=114.81  Aligned_cols=57  Identities=9%  Similarity=0.104  Sum_probs=45.5

Q ss_pred             HHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHH
Q 010995          194 LLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVL  255 (496)
Q Consensus       194 l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l  255 (496)
                      +.+.|.+.+.+.     .|++|+++++|++|..+++.+.|++.+|++++||.||.|-..+..
T Consensus       113 l~~~L~~~~~~~-----~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~  169 (405)
T PRK08850        113 IQLALLEQVQKQ-----DNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSW  169 (405)
T ss_pred             HHHHHHHHHhcC-----CCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCCh
Confidence            444555554432     478999999999999988888899889989999999999987543

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.36  E-value=2.6e-10  Score=113.76  Aligned_cols=47  Identities=23%  Similarity=0.241  Sum_probs=41.7

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhc
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQS  257 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~  257 (496)
                      .|++++++++|++++.++++++|++.+|.++++|.||.|...+...+
T Consensus       124 ~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~vR  170 (384)
T PRK08849        124 PNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQVR  170 (384)
T ss_pred             CCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCchhH
Confidence            57899999999999999888999999999999999999998765544

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.36  E-value=5.5e-10  Score=107.23  Aligned_cols=55  Identities=18%  Similarity=0.138  Sum_probs=41.6

Q ss_pred             HHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCC-CcEEEcCEEEEecChHH
Q 010995          194 LLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTED-GCVYEANYVILSASIGV  254 (496)
Q Consensus       194 l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~-G~~~~ad~VI~A~p~~~  254 (496)
                      +.+.|.+.+.+      .|++++++++|+++..+++++.+...+ +.+++||.||.|.+...
T Consensus        93 l~~~l~~~~~~------~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s  148 (295)
T TIGR02032        93 FDEQLAERAQE------AGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS  148 (295)
T ss_pred             HHHHHHHHHHH------cCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence            44444444444      689999999999999888887765443 45899999999998754

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.35  E-value=3e-10  Score=113.62  Aligned_cols=56  Identities=13%  Similarity=0.049  Sum_probs=44.5

Q ss_pred             HHHHHHHHHhhccCCCCCccc-cceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995          192 AHLLYKMAEEFLSTSDGKILD-NRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      ..+.+.|.+.+.+      .| ++++ +++|++|..+++++.|++.+|.++.||.||.|.....
T Consensus       111 ~~l~~~L~~~~~~------~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S  167 (388)
T PRK07608        111 SLIERALWAALRF------QPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHS  167 (388)
T ss_pred             HHHHHHHHHHHHh------CCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCc
Confidence            3455666666554      45 7888 9999999988888889888888899999999998753

>PRK06185 hypothetical protein; Provisional

Probab=99.35  E-value=5.2e-10  Score=112.69  Aligned_cols=67  Identities=25%  Similarity=0.431  Sum_probs=50.2

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHh
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASK   80 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~   80 (496)
                      |+....+||+|||||++||++|..|+++|+ +|+|+|+.+...      +      +..+..       -.....+++++
T Consensus         1 ~~~~~~~dV~IvGgG~~Gl~~A~~La~~G~-~v~liE~~~~~~------~------~~r~~~-------l~~~s~~~L~~   60 (407)
T PRK06185          1 MAEVETTDCCIVGGGPAGMMLGLLLARAGV-DVTVLEKHADFL------R------DFRGDT-------VHPSTLELMDE   60 (407)
T ss_pred             CCccccccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCccC------c------cccCce-------eChhHHHHHHH
Confidence            777788999999999999999999999999 699999975321      0      000111       23346788999


Q ss_pred             cCCcccc
Q 010995           81 SGLRTCF   87 (496)
Q Consensus        81 lgl~~~~   87 (496)
                      +|+....
T Consensus        61 lG~~~~~   67 (407)
T PRK06185         61 LGLLERF   67 (407)
T ss_pred             cCChhHH
Confidence            9986543

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=99.35  E-value=4.7e-10  Score=112.23  Aligned_cols=157  Identities=21%  Similarity=0.302  Sum_probs=95.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC--CeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI--GGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGL   83 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~--GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl   83 (496)
                      +.||+|||||++||++|..|+++|+ +|+|+|+++..  .+.            .++..+.       ++..++++++|+
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~-~v~v~E~~~~~~~~~~------------~~a~~l~-------~~~~~~l~~lGl   61 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGI-DSVVLERRSREYVEGR------------IRAGVLE-------QGTVDLLREAGV   61 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCC-CEEEEEcCCccccccc------------cceeEEC-------HhHHHHHHHcCC
Confidence            6799999999999999999999999 69999998742  111            1222232       356789999998


Q ss_pred             ccccccCCC--cceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHH
Q 010995           84 RTCFSDYTN--ARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFIL  161 (496)
Q Consensus        84 ~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (496)
                      .........  ....++ .+|.....                                    .+..              
T Consensus        62 ~~~l~~~~~~~~~~~~~-~~g~~~~~------------------------------------~~~~--------------   90 (392)
T PRK08243         62 GERMDREGLVHDGIELR-FDGRRHRI------------------------------------DLTE--------------   90 (392)
T ss_pred             hHHHHhcCCccCcEEEE-ECCEEEEe------------------------------------cccc--------------
Confidence            755422111  111122 12211000                                    0000              


Q ss_pred             hhccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEE-cCCceEEEe-CCCc
Q 010995          162 HDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQH-SRNGVTVKT-EDGC  239 (496)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~-~~~~v~V~~-~~G~  239 (496)
                                     ..++......   +-..+.+.|.+.+.+      .|++++++++|++++. +++++.|+. .+|+
T Consensus        91 ---------------~~~~~~~~~~---~~~~l~~~Ll~~a~~------~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~  146 (392)
T PRK08243         91 ---------------LTGGRAVTVY---GQTEVTRDLMAARLA------AGGPIRFEASDVALHDFDSDRPYVTYEKDGE  146 (392)
T ss_pred             ---------------ccCCceEEEe---CcHHHHHHHHHHHHh------CCCeEEEeeeEEEEEecCCCceEEEEEcCCe
Confidence                           0000001111   112345555555444      6899999999999987 556666665 4663


Q ss_pred             --EEEcCEEEEecChHHHhc
Q 010995          240 --VYEANYVILSASIGVLQS  257 (496)
Q Consensus       240 --~~~ad~VI~A~p~~~l~~  257 (496)
                        +++||.||-|-..+...+
T Consensus       147 ~~~i~ad~vVgADG~~S~vR  166 (392)
T PRK08243        147 EHRLDCDFIAGCDGFHGVSR  166 (392)
T ss_pred             EEEEEeCEEEECCCCCCchh
Confidence              689999999988766554

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.35  E-value=3.7e-10  Score=113.34  Aligned_cols=44  Identities=14%  Similarity=0.188  Sum_probs=39.2

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      .|++++++++|++|..+++++.|++.+|..+++|.||.|.....
T Consensus       126 ~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S  169 (395)
T PRK05732        126 PGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHS  169 (395)
T ss_pred             CCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCh
Confidence            57899999999999988888999888888899999999988654

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.34  E-value=1.8e-11  Score=119.59  Aligned_cols=197  Identities=20%  Similarity=0.254  Sum_probs=111.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC--CCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEec-----CCCCCCChHHHH
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENG--IEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAG-----VGGKESNPVWEL   77 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G--~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~-----~~~~~~~~~~~l   77 (496)
                      .++||+||||||.|+++|+.|++.+  + +|+|+|+.+.+|--.++  .+..++..|..+-.+     +-.......+++
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~-~V~llEk~~~~a~~sS~--~NSgviHag~~y~p~slka~l~~~g~~~~~~~   78 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDL-SVALLEKEDGVAQESSS--NNSGVIHAGLYYTPGSLKAKLCVAGNINEFAI   78 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCc-eEEEEEccCcccccccc--CcccceeccccCCCcchhhHHHHHHHHHHHHH
Confidence            5789999999999999999999998  8 79999999999876665  222233333111100     000012233567


Q ss_pred             HHhcCCccccccCCCcceEEEcCCCcccC--hhHHHHHHHHHHHHHHHHhcccc-ccchhHHHHHHhhhcCCCCCCChHH
Q 010995           78 ASKSGLRTCFSDYTNARYNIYDRSGKIIP--SGVAADSYKKAVESAIANLKNLE-ATNSNIGEVIKAATELPSSPKTPLE  154 (496)
Q Consensus        78 ~~~lgl~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  154 (496)
                      +++++++...             .|+++-  .+.-.+.++...++...  ...+ ....+-+++.+.             
T Consensus        79 ~kq~~~~f~~-------------~g~l~vA~~e~e~~~L~~l~~~~~~--ngv~~~~~ld~~~i~~~-------------  130 (429)
T COG0579          79 CKQLGIPFIN-------------CGKLSVATGEEEVERLEKLYERGKA--NGVFDLEILDKEEIKEL-------------  130 (429)
T ss_pred             HHHhCCcccc-------------cCeEEEEEChHHHHHHHHHHHHHhh--CCCcceeecCHHHHHhh-------------
Confidence            7777743221             122211  00001111111111111  0111 011111122111             


Q ss_pred             HHHHHHHhhccccccCCcccccccCCcceeeeCcc---cHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCc-
Q 010995          155 LAIDFILHDFEMAEVEPISTYVDFGEREFLVADER---GYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNG-  230 (496)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~-  230 (496)
                                     ++...-   +.........+   .+..+..+|++.+++      .|++|++|++|+.|++.+++ 
T Consensus       131 ---------------eP~l~~---~~~aal~~p~~giV~~~~~t~~l~e~a~~------~g~~i~ln~eV~~i~~~~dg~  186 (429)
T COG0579         131 ---------------EPLLNE---GAVAALLVPSGGIVDPGELTRALAEEAQA------NGVELRLNTEVTGIEKQSDGV  186 (429)
T ss_pred             ---------------Cccccc---cceeeEEcCCCceEcHHHHHHHHHHHHHH------cCCEEEecCeeeEEEEeCCce
Confidence                           111000   00001111111   367799999999988      79999999999999999885 


Q ss_pred             eEEEeCCCcE-EEcCEEEEecChHHHh
Q 010995          231 VTVKTEDGCV-YEANYVILSASIGVLQ  256 (496)
Q Consensus       231 v~V~~~~G~~-~~ad~VI~A~p~~~l~  256 (496)
                      ..+.+.+|++ ++|+.||.|.+.....
T Consensus       187 ~~~~~~~g~~~~~ak~Vin~AGl~Ad~  213 (429)
T COG0579         187 FVLNTSNGEETLEAKFVINAAGLYADP  213 (429)
T ss_pred             EEEEecCCcEEEEeeEEEECCchhHHH
Confidence            4477888866 9999999999876543

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.34  E-value=2e-11  Score=123.04  Aligned_cols=58  Identities=16%  Similarity=0.264  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCC-----cEEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDG-----CVYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G-----~~~~ad~VI~A~p~~~  254 (496)
                      ...++..|.+.+.+      .|++|+.+++|++|+.+++++++.+.++     .+++||+||+|+.+..
T Consensus       196 ~~~~~~~l~~~a~~------~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s  258 (410)
T PRK12409        196 IHKFTTGLAAACAR------LGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS  258 (410)
T ss_pred             HHHHHHHHHHHHHh------CCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcCh
Confidence            45677777777766      7999999999999998888777654332     3789999999998764

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=99.33  E-value=6.6e-10  Score=115.68  Aligned_cols=164  Identities=21%  Similarity=0.302  Sum_probs=98.3

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGL   83 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl   83 (496)
                      ..++||+|||||++||++|..|+++|+ +|+|+|+.+.++..-+              .+.     -..+..++++++|+
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~-~v~v~Er~~~~~~~~r--------------a~~-----l~~~~~~~L~~lGl   67 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGV-RVLVLERWPTLYDLPR--------------AVG-----IDDEALRVLQAIGL   67 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCCCCc--------------eee-----eCHHHHHHHHHcCC
Confidence            347899999999999999999999999 6999999876532111              111     23467788899998


Q ss_pred             ccccccCC--CcceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHH
Q 010995           84 RTCFSDYT--NARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFIL  161 (496)
Q Consensus        84 ~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (496)
                      ........  .....+++.+|..+..                                     +.. +            
T Consensus        68 ~~~l~~~~~~~~~~~~~~~~g~~~~~-------------------------------------~~~-~------------   97 (538)
T PRK06183         68 ADEVLPHTTPNHGMRFLDAKGRCLAE-------------------------------------IAR-P------------   97 (538)
T ss_pred             hhHHHhhcccCCceEEEcCCCCEEEE-------------------------------------EcC-C------------
Confidence            75542211  1112233333321100                                     000 0            


Q ss_pred             hhccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeC--CC-
Q 010995          162 HDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTE--DG-  238 (496)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~--~G-  238 (496)
                                  ....++........+   ..+-+.|.+.+.+.     .|++|+++++|++|+.++++|+|++.  +| 
T Consensus        98 ------------~~~~~g~~~~~~~~q---~~le~~L~~~~~~~-----~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~  157 (538)
T PRK06183         98 ------------STGEFGWPRRNAFHQ---PLLEAVLRAGLARF-----PHVRVRFGHEVTALTQDDDGVTVTLTDADGQ  157 (538)
T ss_pred             ------------CCCCCCCChhccCCh---HHHHHHHHHHHHhC-----CCcEEEcCCEEEEEEEcCCeEEEEEEcCCCC
Confidence                        000000000000001   11233333433321     48999999999999999999887765  46 


Q ss_pred             -cEEEcCEEEEecChHHHhc
Q 010995          239 -CVYEANYVILSASIGVLQS  257 (496)
Q Consensus       239 -~~~~ad~VI~A~p~~~l~~  257 (496)
                       ++++||.||-|-..+...+
T Consensus       158 ~~~i~ad~vVgADG~~S~vR  177 (538)
T PRK06183        158 RETVRARYVVGCDGANSFVR  177 (538)
T ss_pred             EEEEEEEEEEecCCCchhHH
Confidence             4789999999998876554

>PRK06834 hypothetical protein; Provisional

Probab=99.32  E-value=1.1e-09  Score=112.05  Aligned_cols=57  Identities=21%  Similarity=0.200  Sum_probs=45.8

Q ss_pred             HHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHh
Q 010995          194 LLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQ  256 (496)
Q Consensus       194 l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~  256 (496)
                      +-+.|.+.+.+      .|++|+++++|++|+.+++++.|++.+|++++||+||.|.......
T Consensus       102 le~~L~~~l~~------~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~v  158 (488)
T PRK06834        102 IERILAEWVGE------LGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLV  158 (488)
T ss_pred             HHHHHHHHHHh------CCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCc
Confidence            44445555544      6899999999999999999999888888889999999998775543

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.32  E-value=8.2e-10  Score=109.72  Aligned_cols=161  Identities=13%  Similarity=0.128  Sum_probs=98.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCcc
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRT   85 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~   85 (496)
                      +.||+|||||++||++|..|+++|+ +|+|+|+.+....        ....+..+..       -.++..++++++|+..
T Consensus         1 ~~dV~IvGgG~~Gl~~A~~L~~~G~-~v~l~E~~~~~~~--------~~~~~~r~~~-------l~~~~~~~L~~lGl~~   64 (374)
T PRK06617          1 MSNTVILGCGLSGMLTALSFAQKGI-KTTIFESKSVKSP--------EFFKDIRTTA-------LTPHSKNFLFSIDIWE   64 (374)
T ss_pred             CccEEEECCCHHHHHHHHHHHcCCC-eEEEecCCCCCCC--------ccCcCceEEE-------eCHHHHHHHHHCCcHH
Confidence            4689999999999999999999999 6999998643211        0000111111       2345778889999854


Q ss_pred             ccccCCC--cceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHHhh
Q 010995           86 CFSDYTN--ARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHD  163 (496)
Q Consensus        86 ~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (496)
                      .......  ....+++.+|...-                                                         
T Consensus        65 ~l~~~~~~~~~~~~~~~~g~~~~---------------------------------------------------------   87 (374)
T PRK06617         65 ELEKFVAEMQDIYVVDNKASEIL---------------------------------------------------------   87 (374)
T ss_pred             HHHhhcCCCcEEEEEECCCceEE---------------------------------------------------------
Confidence            3321111  11223323322100                                                         


Q ss_pred             ccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEc
Q 010995          164 FEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEA  243 (496)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~a  243 (496)
                       .+.   .    .......+.+  .  ...|.+.|.+.+.+.     .+++++++++|++|..+++++.|.+.++ +++|
T Consensus        88 -~~~---~----~~~~~~g~~v--~--r~~L~~~L~~~~~~~-----~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~a  149 (374)
T PRK06617         88 -DLR---N----DADAVLGYVV--K--NSDFKKILLSKITNN-----PLITLIDNNQYQEVISHNDYSIIKFDDK-QIKC  149 (374)
T ss_pred             -Eec---C----CCCCCcEEEE--E--HHHHHHHHHHHHhcC-----CCcEEECCCeEEEEEEcCCeEEEEEcCC-EEee
Confidence             000   0    0000001111  1  355666666665542     3478999999999999888898888776 8999


Q ss_pred             CEEEEecChHHHhc
Q 010995          244 NYVILSASIGVLQS  257 (496)
Q Consensus       244 d~VI~A~p~~~l~~  257 (496)
                      |.||.|-..+...+
T Consensus       150 dlvIgADG~~S~vR  163 (374)
T PRK06617        150 NLLIICDGANSKVR  163 (374)
T ss_pred             CEEEEeCCCCchhH
Confidence            99999988765544

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.30  E-value=2.2e-09  Score=107.27  Aligned_cols=32  Identities=41%  Similarity=0.676  Sum_probs=30.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +||+|||||+||++||+.|+++|+ +|+|+|++
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~-~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGI-ETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-cEEEEECC
Confidence            699999999999999999999999 69999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=99.30  E-value=2.3e-09  Score=111.92  Aligned_cols=64  Identities=25%  Similarity=0.497  Sum_probs=49.5

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCC--eEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHH
Q 010995            2 DSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIG--GRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELAS   79 (496)
Q Consensus         2 ~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~G--Gr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~   79 (496)
                      ..+.++||+|||||++||++|+.|+++|+ +|+|+|+++.+.  +|..                .     -..+..++++
T Consensus        19 ~~~~~~dVlIVGaGpaGl~lA~~L~~~G~-~v~viE~~~~~~~~~ra~----------------~-----l~~~~~~~l~   76 (547)
T PRK08132         19 DDPARHPVVVVGAGPVGLALAIDLAQQGV-PVVLLDDDDTLSTGSRAI----------------C-----FAKRSLEIFD   76 (547)
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHhCCC-cEEEEeCCCCCCCCCeEE----------------E-----EcHHHHHHHH
Confidence            34567899999999999999999999999 699999987542  2211                1     2345678899


Q ss_pred             hcCCcccc
Q 010995           80 KSGLRTCF   87 (496)
Q Consensus        80 ~lgl~~~~   87 (496)
                      ++|+....
T Consensus        77 ~lGl~~~l   84 (547)
T PRK08132         77 RLGCGERM   84 (547)
T ss_pred             HcCCcHHH
Confidence            99987554

>PRK06126 hypothetical protein; Provisional

Probab=99.30  E-value=1e-09  Score=114.70  Aligned_cols=66  Identities=26%  Similarity=0.358  Sum_probs=49.0

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhc
Q 010995            2 DSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKS   81 (496)
Q Consensus         2 ~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~l   81 (496)
                      .....+||+|||||++||++|..|+++|+ +|+|+|+.+.+.-      . +     .+..       ...+..++++++
T Consensus         3 ~~~~~~~VlIVGaGpaGL~~Al~La~~G~-~v~viEr~~~~~~------~-~-----ra~~-------l~~r~~e~L~~l   62 (545)
T PRK06126          3 ENTSETPVLIVGGGPVGLALALDLGRRGV-DSILVERKDGTAF------N-P-----KANT-------TSARSMEHFRRL   62 (545)
T ss_pred             CCCccCCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCCCCCC------C-C-----cccc-------CCHHHHHHHHhc
Confidence            34567899999999999999999999999 6999998753210      0 0     0111       345678889999


Q ss_pred             CCcccc
Q 010995           82 GLRTCF   87 (496)
Q Consensus        82 gl~~~~   87 (496)
                      |+....
T Consensus        63 Gl~~~l   68 (545)
T PRK06126         63 GIADEV   68 (545)
T ss_pred             ChHHHH
Confidence            987654

>PRK08244 hypothetical protein; Provisional

Probab=99.30  E-value=6.4e-10  Score=114.67  Aligned_cols=62  Identities=26%  Similarity=0.238  Sum_probs=47.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCcc
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRT   85 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~   85 (496)
                      .+||+|||||++||++|..|+++|+ +|+|+|+.+.+.-       .     ..+..       -.++..++++++|+..
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~-~v~viEr~~~~~~-------~-----~ra~~-------l~~~~~e~l~~lGl~~   61 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGV-KTCVIERLKETVP-------Y-----SKALT-------LHPRTLEILDMRGLLE   61 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCC-------C-----cceeE-------ecHHHHHHHHhcCcHH
Confidence            5899999999999999999999999 6999999864310       0     00111       3456788999999865


Q ss_pred             cc
Q 010995           86 CF   87 (496)
Q Consensus        86 ~~   87 (496)
                      ..
T Consensus        62 ~l   63 (493)
T PRK08244         62 RF   63 (493)
T ss_pred             HH
Confidence            44

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.30  E-value=5.1e-11  Score=118.69  Aligned_cols=57  Identities=28%  Similarity=0.307  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      ...++..+.+.+.+      .|++++++++|++|..+++++.|.+.+| ++.+|.||+|++...
T Consensus       148 p~~~~~~~~~~~~~------~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~  204 (376)
T PRK11259        148 PELAIKAHLRLARE------AGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWV  204 (376)
T ss_pred             HHHHHHHHHHHHHH------CCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcch
Confidence            34566666666555      6999999999999999888888988887 899999999998753

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.29  E-value=6.7e-11  Score=120.59  Aligned_cols=55  Identities=22%  Similarity=0.224  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      ...++..|++.+.+      .|++|+.+++|++|+. ++.+.|+|.+| ++.||+||+|+...
T Consensus       182 P~~l~~~L~~~a~~------~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~  236 (460)
T TIGR03329       182 PGLLVRGLRRVALE------LGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAW  236 (460)
T ss_pred             HHHHHHHHHHHHHH------cCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccc
Confidence            45677888877766      7999999999999985 45577888877 79999999998754

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=99.27  E-value=1.2e-10  Score=106.33  Aligned_cols=71  Identities=28%  Similarity=0.512  Sum_probs=63.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeee--CCcEE-eecceEEecCCCCCCChHHHHHHhc
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKF--GGVSV-ELGAGWIAGVGGKESNPVWELASKS   81 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~--~g~~~-d~G~~~~~~~~~~~~~~~~~l~~~l   81 (496)
                      +.|.+|||||++|+..|..|++.|. +|+|+|+++++||.|.+...  .|..+ -.|+|.|+.    ....+|+++..+
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk-~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT----~~~~Vwdyv~~F   74 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGK-RVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHT----DNKRVWDYVNQF   74 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCC-EEEEEeccccCCCccccccCCCCCeEEeeccCceeec----CchHHHHHHhhh
Confidence            4799999999999999999999999 69999999999999999765  46554 569999998    999999999874

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.26  E-value=2e-10  Score=116.48  Aligned_cols=60  Identities=23%  Similarity=0.277  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHhhcc----CCCCCccccceeeCceeEEEEEcC-CceEEEeCCCcEEEcCEEEEecChHHH
Q 010995          191 YAHLLYKMAEEFLS----TSDGKILDNRLKLNKVVRELQHSR-NGVTVKTEDGCVYEANYVILSASIGVL  255 (496)
Q Consensus       191 ~~~l~~~l~~~~~~----~~~~~~~g~~i~~~~~V~~I~~~~-~~v~V~~~~G~~~~ad~VI~A~p~~~l  255 (496)
                      ...+.+.|.+.+.+    .  |  .+++|+++++|++|+.++ +.+.|+|.+| ++.||+||+|+.....
T Consensus       210 ~~~L~~al~~~a~~~~~~~--G--~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~  274 (497)
T PTZ00383        210 YQKLSESFVKHARRDALVP--G--KKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL  274 (497)
T ss_pred             HHHHHHHHHHHHHhhhhhc--C--CCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence            56778888777654    2  0  126799999999999874 4577888887 7999999999987654

>PLN02463 lycopene beta cyclase

Probab=99.26  E-value=2.2e-09  Score=107.85  Aligned_cols=54  Identities=20%  Similarity=0.290  Sum_probs=42.9

Q ss_pred             HHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          193 HLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       193 ~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .+.+.|.+.+.+      .|++++ +++|++|+.+++++.|++.+|.+++||.||.|....
T Consensus       115 ~L~~~Ll~~~~~------~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~  168 (447)
T PLN02463        115 KLKSKMLERCIA------NGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFS  168 (447)
T ss_pred             HHHHHHHHHHhh------cCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCC
Confidence            344555555544      578885 579999999988889999999899999999999765

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=99.25  E-value=1.7e-09  Score=109.72  Aligned_cols=60  Identities=10%  Similarity=0.040  Sum_probs=44.7

Q ss_pred             HHHHHHHHhhccCCCCCcc--ccceeeCceeEEEEEc-------CCceEEEeCCCcEEEcCEEEEecChHHHhc
Q 010995          193 HLLYKMAEEFLSTSDGKIL--DNRLKLNKVVRELQHS-------RNGVTVKTEDGCVYEANYVILSASIGVLQS  257 (496)
Q Consensus       193 ~l~~~l~~~~~~~~~~~~~--g~~i~~~~~V~~I~~~-------~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~  257 (496)
                      .+.+.|.+.+.+.     .  +++++++++|++|+.+       +++++|++.+|++++||.||-|-......+
T Consensus       118 ~l~~~L~~~~~~~-----~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR  186 (437)
T TIGR01989       118 NIQNSLYNRLQEY-----NGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVR  186 (437)
T ss_pred             HHHHHHHHHHHhC-----CCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhH
Confidence            3445555554431     2  4899999999999752       456889888999999999999988766544

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.25  E-value=2.3e-10  Score=106.11  Aligned_cols=41  Identities=46%  Similarity=0.710  Sum_probs=37.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      ..+||+|||||++||+||+.|+++|. +|+|+|++..+||.+
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G~-~V~vlEk~~~~Ggg~   60 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNGL-KVCVLERSLAFGGGS   60 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCccc
Confidence            46899999999999999999999999 699999999998754

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.23  E-value=3.5e-10  Score=114.30  Aligned_cols=57  Identities=19%  Similarity=0.197  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCCCcEEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      ...+++.|.+.+.+      .|++|+++++|++|+.+++++. |++.++ ++.||+||+|+.+..
T Consensus       200 p~~~~~~l~~~~~~------~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~  257 (416)
T PRK00711        200 CQLFTQRLAAMAEQ------LGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYS  257 (416)
T ss_pred             HHHHHHHHHHHHHH------CCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence            45677888777766      7999999999999998888765 777655 899999999998753

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.22  E-value=2e-10  Score=106.87  Aligned_cols=41  Identities=34%  Similarity=0.579  Sum_probs=37.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      ..+||+|||||+|||+||+.|+++|+ +|+|+|+...+||.+
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~~G~-~V~liEk~~~~Ggg~   64 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAKAGL-KVAVFERKLSFGGGM   64 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHhCCC-eEEEEecCCCCCCcc
Confidence            46899999999999999999999999 699999999998754

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.22  E-value=1.4e-10  Score=114.36  Aligned_cols=60  Identities=22%  Similarity=0.228  Sum_probs=42.5

Q ss_pred             HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeC---CC--cEEEcCEEEEecChHHHhc
Q 010995          192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTE---DG--CVYEANYVILSASIGVLQS  257 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~---~G--~~~~ad~VI~A~p~~~l~~  257 (496)
                      ..+-+.|.+.+.+      .|++|+++++|++++.+++++++.+.   +|  ++++||.||-|-..+...+
T Consensus       111 ~~l~~~L~~~~~~------~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR  175 (356)
T PF01494_consen  111 PELDRALREEAEE------RGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKVR  175 (356)
T ss_dssp             HHHHHHHHHHHHH------HTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHH
T ss_pred             HHHHHhhhhhhhh------hhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccchh
Confidence            3455556666555      68999999999999998888764432   33  3689999999988766443

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.21  E-value=3e-10  Score=114.29  Aligned_cols=56  Identities=16%  Similarity=0.030  Sum_probs=43.4

Q ss_pred             HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEc-CCceE-EEeCCCcEEEcCEEEEecChHH
Q 010995          192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHS-RNGVT-VKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~-~~~v~-V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      ..+...|++.+.+      .|++++.+++|++|+.. ++++. |++.+| ++.+++||+|+....
T Consensus       183 ~~l~~~l~~~a~~------~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~  240 (407)
T TIGR01373       183 DAVAWGYARGADR------RGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS  240 (407)
T ss_pred             HHHHHHHHHHHHH------CCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence            4566777777666      79999999999999864 45554 888777 799999999876543

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.21  E-value=3.1e-10  Score=114.70  Aligned_cols=59  Identities=27%  Similarity=0.369  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEc-CCceEEE---eCCCc--EEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHS-RNGVTVK---TEDGC--VYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~-~~~v~V~---~~~G~--~~~ad~VI~A~p~~~  254 (496)
                      ...+.++|.+.+.+.     .|++|+++++|++|+.+ +++|+|.   +.+|+  +++||+||+|+....
T Consensus       183 ~~~L~~aL~~~l~~~-----~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS  247 (497)
T PRK13339        183 FGALTRKLAKHLESH-----PNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA  247 (497)
T ss_pred             HHHHHHHHHHHHHhC-----CCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch
Confidence            566788888877542     58999999999999987 6677765   44452  689999999998765

>PRK07190 hypothetical protein; Provisional

Probab=99.20  E-value=2.9e-10  Score=116.08  Aligned_cols=47  Identities=17%  Similarity=0.213  Sum_probs=41.4

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhc
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQS  257 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~  257 (496)
                      .|++|+++++|++|+.+++++.+.+.+|++++||+||.|.......+
T Consensus       122 ~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S~vR  168 (487)
T PRK07190        122 AGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRSFVR  168 (487)
T ss_pred             CCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCHHHH
Confidence            68999999999999999888888877888899999999998766544

>PRK07538 hypothetical protein; Provisional

Probab=99.20  E-value=3.8e-09  Score=106.48  Aligned_cols=60  Identities=27%  Similarity=0.490  Sum_probs=45.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCcccc
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCF   87 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~~~   87 (496)
                      ||+|||||++||++|..|+++|+ +|+|+|+++.++-             .|.. +.     -.++..+.++++|+....
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~~~-------------~g~g-i~-----l~p~~~~~L~~lgl~~~l   61 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGI-EVVVFEAAPELRP-------------LGVG-IN-----LLPHAVRELAELGLLDAL   61 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-cEEEEEcCCcccc-------------cCcc-ee-----eCchHHHHHHHCCCHHHH
Confidence            79999999999999999999999 6999999865420             1111 11     234577888889986543

>PRK05868 hypothetical protein; Validated

Probab=99.20  E-value=3.8e-10  Score=111.83  Aligned_cols=161  Identities=17%  Similarity=0.179  Sum_probs=98.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCcc
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRT   85 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~   85 (496)
                      |.||+|||||++||++|..|+++|+ +|+|+|+++.+.-             .|.. +.     ...+..++++++|+..
T Consensus         1 ~~~V~IvGgG~aGl~~A~~L~~~G~-~v~viE~~~~~~~-------------~g~~-i~-----~~~~a~~~L~~lGl~~   60 (372)
T PRK05868          1 MKTVVVSGASVAGTAAAYWLGRHGY-SVTMVERHPGLRP-------------GGQA-ID-----VRGPALDVLERMGLLA   60 (372)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCCCC-------------Ccee-ee-----eCchHHHHHHhcCCHH
Confidence            4689999999999999999999999 6999999865421             1111 11     2345668889999864


Q ss_pred             ccccC--CCcceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHHhh
Q 010995           86 CFSDY--TNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHD  163 (496)
Q Consensus        86 ~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (496)
                      .....  ......+++.+|..+....                             ..                       
T Consensus        61 ~~~~~~~~~~~~~~~~~~g~~~~~~~-----------------------------~~-----------------------   88 (372)
T PRK05868         61 AAQEHKTRIRGASFVDRDGNELFRDT-----------------------------ES-----------------------   88 (372)
T ss_pred             HHHhhccCccceEEEeCCCCEEeecc-----------------------------cc-----------------------
Confidence            43211  1111223334443211000                             00                       


Q ss_pred             ccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEc
Q 010995          164 FEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEA  243 (496)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~a  243 (496)
                            ....  ..++.. .+...   -..|.+.|.+.+.       .|++++++++|++|+.++++|+|+..+|++++|
T Consensus        89 ------~~~~--~~~~~~-~~~i~---R~~L~~~l~~~~~-------~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~a  149 (372)
T PRK05868         89 ------TPTG--GPVNSP-DIELL---RDDLVELLYGATQ-------PSVEYLFDDSISTLQDDGDSVRVTFERAAAREF  149 (372)
T ss_pred             ------cccC--CCCCCc-eEEEE---HHHHHHHHHHhcc-------CCcEEEeCCEEEEEEecCCeEEEEECCCCeEEe
Confidence                  0000  000000 11111   1234444433322       578999999999999888889999999989999


Q ss_pred             CEEEEecChHHHhc
Q 010995          244 NYVILSASIGVLQS  257 (496)
Q Consensus       244 d~VI~A~p~~~l~~  257 (496)
                      |.||-|-..+...+
T Consensus       150 dlvIgADG~~S~vR  163 (372)
T PRK05868        150 DLVIGADGLHSNVR  163 (372)
T ss_pred             CEEEECCCCCchHH
Confidence            99999988766554

>PRK08163 salicylate hydroxylase; Provisional

Probab=99.20  E-value=2.7e-10  Score=114.30  Aligned_cols=166  Identities=22%  Similarity=0.388  Sum_probs=101.2

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHh
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASK   80 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~   80 (496)
                      |+  ++.||+|||||++||++|..|+++|+ +|+|+|+++.++-             .|.. +.     -.++..+++++
T Consensus         1 ~~--~~~~V~IvGaGiaGl~~A~~L~~~g~-~v~v~Er~~~~~~-------------~g~g-i~-----l~~~~~~~l~~   58 (396)
T PRK08163          1 MT--KVTPVLIVGGGIGGLAAALALARQGI-KVKLLEQAAEIGE-------------IGAG-IQ-----LGPNAFSALDA   58 (396)
T ss_pred             CC--CCCeEEEECCcHHHHHHHHHHHhCCC-cEEEEeeCccccc-------------ccce-ee-----eCchHHHHHHH
Confidence            54  36899999999999999999999999 6999999875431             1111 11     24567788999


Q ss_pred             cCCccccccCC--CcceEEEcC-CCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHH
Q 010995           81 SGLRTCFSDYT--NARYNIYDR-SGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAI  157 (496)
Q Consensus        81 lgl~~~~~~~~--~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (496)
                      +|+........  .....+++. +|..+..                         ......+.                 
T Consensus        59 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~-----------------   96 (396)
T PRK08163         59 LGVGEAARQRAVFTDHLTMMDAVDAEEVVR-------------------------IPTGQAFR-----------------   96 (396)
T ss_pred             cCChHHHHhhccCCcceEEEeCCCCCEEEE-------------------------eccchhHH-----------------
Confidence            99865432110  111112221 1211000                         00000000                 


Q ss_pred             HHHHhhccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCC
Q 010995          158 DFILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTED  237 (496)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~  237 (496)
                                        ..++. .+....   -..+.+.|.+.+.+.     .+++++++++|++++.+++++.|++.+
T Consensus        97 ------------------~~~~~-~~~~i~---r~~l~~~L~~~~~~~-----~~v~~~~~~~v~~i~~~~~~v~v~~~~  149 (396)
T PRK08163         97 ------------------ARFGN-PYAVIH---RADIHLSLLEAVLDH-----PLVEFRTSTHVVGIEQDGDGVTVFDQQ  149 (396)
T ss_pred             ------------------HhcCC-cEEEEE---HHHHHHHHHHHHHhc-----CCcEEEeCCEEEEEecCCCceEEEEcC
Confidence                              00111 111111   233555566555431     358999999999999888889998888


Q ss_pred             CcEEEcCEEEEecChHHHhc
Q 010995          238 GCVYEANYVILSASIGVLQS  257 (496)
Q Consensus       238 G~~~~ad~VI~A~p~~~l~~  257 (496)
                      |+++.||.||.|.......+
T Consensus       150 g~~~~ad~vV~AdG~~S~~r  169 (396)
T PRK08163        150 GNRWTGDALIGCDGVKSVVR  169 (396)
T ss_pred             CCEEecCEEEECCCcChHHH
Confidence            88899999999998765443

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.19  E-value=1e-09  Score=111.87  Aligned_cols=58  Identities=22%  Similarity=0.375  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHhhccCCCCCccc-cceeeCceeEEEEEcCCc-eEEEeC---CCc--EEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILD-NRLKLNKVVRELQHSRNG-VTVKTE---DGC--VYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g-~~i~~~~~V~~I~~~~~~-v~V~~~---~G~--~~~ad~VI~A~p~~~  254 (496)
                      ...+.+.|.+.+.+      .| ++|+++++|++|+.++++ |.|++.   +|+  ++.||+||+|+....
T Consensus       182 ~~~l~~aL~~~a~~------~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s  246 (494)
T PRK05257        182 FGALTRQLVGYLQK------QGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA  246 (494)
T ss_pred             HHHHHHHHHHHHHh------CCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence            66788888888766      45 799999999999986554 766543   353  689999999998754

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.19  E-value=5.5e-11  Score=103.54  Aligned_cols=42  Identities=31%  Similarity=0.515  Sum_probs=34.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      ..+||+|||||+|||+||++|+++|+ +|+|+|++..+||.+.
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~-kV~v~E~~~~~GGg~~   57 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGL-KVAVIERKLSPGGGMW   57 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS--EEEEESSSS-BTTTT
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCC-eEEEEecCCCCCcccc
Confidence            35799999999999999999999999 6999999999988443

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.18  E-value=4.2e-10  Score=113.73  Aligned_cols=42  Identities=29%  Similarity=0.567  Sum_probs=39.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      +.++|+|||||+|||+||++|.+.|+ +|+|+|+++.+||...
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~-~v~vfE~~~~vGG~W~   50 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGH-TVVVFEREKQVGGLWV   50 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCC-eEEEEecCCCCcceee
Confidence            46899999999999999999999999 7999999999999765

>PRK11445 putative oxidoreductase; Provisional

Probab=99.18  E-value=1.3e-08  Score=100.16  Aligned_cols=46  Identities=17%  Similarity=0.245  Sum_probs=37.9

Q ss_pred             cccceeeCceeEEEEEcCCceEEEe-CCCc--EEEcCEEEEecChHHHh
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKT-EDGC--VYEANYVILSASIGVLQ  256 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~-~~G~--~~~ad~VI~A~p~~~l~  256 (496)
                      .|+++++++.|++|+.+++++.|++ .+|+  +++||.||.|.......
T Consensus       111 ~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~v  159 (351)
T PRK11445        111 ASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSMV  159 (351)
T ss_pred             cCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcHH
Confidence            5789999999999999888888775 4664  68999999999876543

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.17  E-value=1.2e-08  Score=102.18  Aligned_cols=56  Identities=14%  Similarity=0.025  Sum_probs=42.4

Q ss_pred             HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEc-CCceEEEeCCCcEEEcCEEEEecChHH
Q 010995          192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHS-RNGVTVKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~-~~~v~V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      ..+.+.|.+.+.+      .|++++ ..+|..+..+ ++.+.|++.+|++++||.||.|.+...
T Consensus        85 ~~l~~~l~~~~~~------~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        85 TRLHEELLQKCPE------GGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             HHHHHHHHHHHHh------cCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence            3455556555544      577775 6688888877 566778888888899999999999875

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PLN02697 lycopene epsilon cyclase

Probab=99.17  E-value=3.1e-08  Score=101.27  Aligned_cols=56  Identities=16%  Similarity=0.243  Sum_probs=42.9

Q ss_pred             HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCCCcEEEcCEEEEecChHH
Q 010995          192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      ..+.+.|.+.+.+      .|+++ ++++|++|..+++++. +.+.+|.+++||.||.|.....
T Consensus       192 ~~L~~~Ll~~a~~------~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        192 TLLHEELLRRCVE------SGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             HHHHHHHHHHHHh------cCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence            3455666666554      58887 7889999998877765 4566778899999999998865

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.17  E-value=5.6e-10  Score=115.79  Aligned_cols=58  Identities=17%  Similarity=0.016  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEe---CCC--cEEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKT---EDG--CVYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~---~~G--~~~~ad~VI~A~p~~~  254 (496)
                      -..++..++..+.+      .|++++++++|++|..+++++. |++   .+|  .++.||.||+|+.+..
T Consensus       148 p~rl~~al~~~A~~------~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa  211 (546)
T PRK11101        148 PFRLTAANMLDAKE------HGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG  211 (546)
T ss_pred             HHHHHHHHHHHHHh------CCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence            34567777776666      7999999999999998877654 443   223  4789999999998754

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=99.17  E-value=5.7e-09  Score=102.25  Aligned_cols=70  Identities=26%  Similarity=0.395  Sum_probs=52.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC---CcEEEEeeCCCCCeEEEeeee--CCcEEeecceEEecCCCCCCChHHHHHHh
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGI---EDILILEASDRIGGRVRNEKF--GGVSVELGAGWIAGVGGKESNPVWELASK   80 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~---~~V~vlEa~~~~GGr~~t~~~--~g~~~d~G~~~~~~~~~~~~~~~~~l~~~   80 (496)
                      ++++=|||+|||+|+||.+|.+.|.   ++|+|||+.+..||.+.+...  .|+.+-.|-+. ..    .+..+++|++.
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~~-~~----~~eclwdLls~   76 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGRMM-EF----HYECLWDLLSS   76 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCccc-cc----hhHHHHHHHHh
Confidence            5678899999999999999998642   279999999999999887553  35544444332 33    56667777765

>PRK06753 hypothetical protein; Provisional

Probab=99.16  E-value=5.2e-10  Score=111.30  Aligned_cols=152  Identities=19%  Similarity=0.289  Sum_probs=96.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCcccc
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCF   87 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~~~   87 (496)
                      ||+|||||++||++|..|+++|+ +|+|+|+++.+.-             .|... .     -.++..+.++++|+....
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~-~v~v~E~~~~~~~-------------~g~gi-~-----l~~~~~~~L~~~gl~~~~   61 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGH-EVKVFEKNESVKE-------------VGAGI-G-----IGDNVIKKLGNHDLAKGI   61 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCcccc-------------cccce-e-----eChHHHHHHHhcChHHHH
Confidence            79999999999999999999999 6999999876521             11111 1     234567777888875443


Q ss_pred             ccC--CCcceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHHhhcc
Q 010995           88 SDY--TNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFE  165 (496)
Q Consensus        88 ~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (496)
                      ...  ......+++.+|..+...                               .                         
T Consensus        62 ~~~~~~~~~~~~~~~~g~~~~~~-------------------------------~-------------------------   85 (373)
T PRK06753         62 KNAGQILSTMNLLDDKGTLLNKV-------------------------------K-------------------------   85 (373)
T ss_pred             HhcCCcccceeEEcCCCCEEeec-------------------------------c-------------------------
Confidence            111  111123343444321000                               0                         


Q ss_pred             ccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCE
Q 010995          166 MAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANY  245 (496)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~  245 (496)
                               + ..+...+.+    .-..|.+.|.+.+.        +.+|+++++|++|+.+++++.|++.+|+++++|.
T Consensus        86 ---------~-~~~~~~~~i----~R~~l~~~L~~~~~--------~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~  143 (373)
T PRK06753         86 ---------L-KSNTLNVTL----HRQTLIDIIKSYVK--------EDAIFTGKEVTKIENETDKVTIHFADGESEAFDL  143 (373)
T ss_pred             ---------c-ccCCccccc----cHHHHHHHHHHhCC--------CceEEECCEEEEEEecCCcEEEEECCCCEEecCE
Confidence                     0 000000101    12345555555542        3579999999999988888999998998999999


Q ss_pred             EEEecChHHHhc
Q 010995          246 VILSASIGVLQS  257 (496)
Q Consensus       246 VI~A~p~~~l~~  257 (496)
                      ||-|-+.....+
T Consensus       144 vigadG~~S~vR  155 (373)
T PRK06753        144 CIGADGIHSKVR  155 (373)
T ss_pred             EEECCCcchHHH
Confidence            999988765444

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=99.16  E-value=1.8e-08  Score=101.80  Aligned_cols=35  Identities=31%  Similarity=0.563  Sum_probs=32.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .++||+|||||++|++||+.|+++|+ +|+|+|++.
T Consensus        38 ~~~DViIVGaGPAG~~aA~~LA~~G~-~VlllEr~~   72 (450)
T PLN00093         38 RKLRVAVIGGGPAGACAAETLAKGGI-ETFLIERKL   72 (450)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence            56899999999999999999999999 699999974

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.15  E-value=7.4e-10  Score=109.85  Aligned_cols=54  Identities=17%  Similarity=0.193  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      ...++..|.+.+.+.     .|++|+.+++|++|+..    .|+|.+| .+.||+||+|+.+..
T Consensus       144 p~~~~~~l~~~~~~~-----~Gv~i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~s  197 (365)
T TIGR03364       144 PREAIPALAAYLAEQ-----HGVEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGADF  197 (365)
T ss_pred             HHHHHHHHHHHHHhc-----CCCEEEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCCh
Confidence            345667776665441     38999999999999753    6777777 578999999998754

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.14  E-value=1.5e-09  Score=110.59  Aligned_cols=58  Identities=17%  Similarity=0.321  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcC-CceEEEe---CCC--cEEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSR-NGVTVKT---EDG--CVYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~-~~v~V~~---~~G--~~~~ad~VI~A~p~~~  254 (496)
                      ...++++|.+.+.+      .|++|+++++|++|+.++ ++|.|++   .+|  .+++||+||+|+....
T Consensus       177 p~~l~~aL~~~a~~------~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s  240 (483)
T TIGR01320       177 FGALTKQLLGYLVQ------NGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA  240 (483)
T ss_pred             HHHHHHHHHHHHHh------CCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence            57788888888776      699999999999999865 4566643   234  3689999999998644

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.14  E-value=4.3e-10  Score=115.68  Aligned_cols=45  Identities=22%  Similarity=0.432  Sum_probs=40.0

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      |+....+||+|||||++|+++|+.|+++|+ +|+|+|+++..+|..
T Consensus         1 ~~~~~~~DVvIIGGGi~G~~~A~~la~rGl-~V~LvEk~d~~~GtS   45 (508)
T PRK12266          1 MTMMETYDLLVIGGGINGAGIARDAAGRGL-SVLLCEQDDLASATS   45 (508)
T ss_pred             CCCCCcCCEEEECcCHHHHHHHHHHHHCCC-eEEEEecCCCCCCcc
Confidence            566678999999999999999999999999 699999998766644

>PRK06996 hypothetical protein; Provisional

Probab=99.14  E-value=1.9e-08  Score=100.90  Aligned_cols=55  Identities=13%  Similarity=0.095  Sum_probs=44.3

Q ss_pred             HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCC---cEEEcCEEEEecCh
Q 010995          192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDG---CVYEANYVILSASI  252 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VI~A~p~  252 (496)
                      ..+.+.|.+.+.+      .|++++++++|++++.++++|+|+..+|   ++++||.||-|-..
T Consensus       115 ~~l~~~L~~~~~~------~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~  172 (398)
T PRK06996        115 GSLVAALARAVRG------TPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGG  172 (398)
T ss_pred             HHHHHHHHHHHHh------CCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCC
Confidence            4566666666655      6889999999999999889999887654   58999999999773

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.14  E-value=7.6e-10  Score=117.93  Aligned_cols=57  Identities=16%  Similarity=0.145  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      ...+++.|.+.+.       .|++++++++|++|+.+++++.|.+.+|..+.||.||+|+....
T Consensus       407 p~~l~~aL~~~a~-------~Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s  463 (662)
T PRK01747        407 PAELCRALLALAG-------QQLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA  463 (662)
T ss_pred             HHHHHHHHHHhcc-------cCcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence            4567888877754       26899999999999998888989888887778999999998764

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=99.13  E-value=3.2e-08  Score=104.30  Aligned_cols=62  Identities=19%  Similarity=0.250  Sum_probs=48.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHH-CCCCcEEEEeeCCCC--CeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHh
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAE-NGIEDILILEASDRI--GGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASK   80 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~-~G~~~V~vlEa~~~~--GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~   80 (496)
                      ++..||+|||||++||++|..|++ .|+ +|+|+|+.+..  .|+.              ..       -..+..++++.
T Consensus        30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi-~v~IiE~~~~~~~~grA--------------~g-------l~prtleiL~~   87 (634)
T PRK08294         30 PDEVDVLIVGCGPAGLTLAAQLSAFPDI-TTRIVERKPGRLELGQA--------------DG-------IACRTMEMFQA   87 (634)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHhcCCCC-cEEEEEcCCCCCCCCee--------------eE-------EChHHHHHHHh
Confidence            457899999999999999999999 499 69999997532  1211              11       24578899999


Q ss_pred             cCCcccc
Q 010995           81 SGLRTCF   87 (496)
Q Consensus        81 lgl~~~~   87 (496)
                      +|+....
T Consensus        88 lGl~d~l   94 (634)
T PRK08294         88 FGFAERI   94 (634)
T ss_pred             ccchHHH
Confidence            9997655

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.12  E-value=9.2e-11  Score=106.07  Aligned_cols=42  Identities=26%  Similarity=0.425  Sum_probs=33.2

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecCh
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASI  252 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~  252 (496)
                      .+.+++++++|++|++++++|.|++.++++++||+||+|+..
T Consensus        95 ~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~  136 (203)
T PF13738_consen   95 FGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGH  136 (203)
T ss_dssp             TTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---S
T ss_pred             cCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeec
Confidence            577899999999999999999999999888999999999984

...

>TIGR02028 ChlP geranylgeranyl reductase

Probab=99.12  E-value=4.1e-08  Score=98.18  Aligned_cols=36  Identities=33%  Similarity=0.520  Sum_probs=32.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIG   43 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~G   43 (496)
                      .||+|||||++|++||+.|+++|+ +|+|+|++...+
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~-~V~llE~~~~~~   36 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGI-QTFLLERKPDNA   36 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCC-cEEEEecCCCCC
Confidence            489999999999999999999999 699999976443

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.11  E-value=4.8e-10  Score=115.41  Aligned_cols=58  Identities=16%  Similarity=-0.002  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCC----cEEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDG----CVYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G----~~~~ad~VI~A~p~~~  254 (496)
                      -..++..++..+.+      .|++++.+++|+++..+++.+.|++.++    .++.||.||+|+++..
T Consensus       154 ~~rl~~~l~~~a~~------~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa  215 (502)
T PRK13369        154 DARLVVLNALDAAE------RGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWV  215 (502)
T ss_pred             HHHHHHHHHHHHHH------CCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence            35566666666665      7999999999999998887777766554    3589999999999754

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.11  E-value=9.5e-08  Score=94.69  Aligned_cols=56  Identities=21%  Similarity=0.252  Sum_probs=44.0

Q ss_pred             HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995          192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      ..+-+.+.+.+..       ++.+++++.|++|+.+++++.|++.+|++++|+.||-|.++..
T Consensus        87 ~~f~~~l~~~~~~-------~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~  142 (374)
T PF05834_consen   87 ADFYEFLLERAAA-------GGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSS  142 (374)
T ss_pred             HHHHHHHHHHhhh-------CCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccc
Confidence            3445555555442       4568899999999999998889999999999999999998543

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.11  E-value=2.6e-09  Score=107.91  Aligned_cols=59  Identities=25%  Similarity=0.205  Sum_probs=44.1

Q ss_pred             cHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEe---CCCc--EEEcCEEEEecChHH
Q 010995          190 GYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKT---EDGC--VYEANYVILSASIGV  254 (496)
Q Consensus       190 G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~---~~G~--~~~ad~VI~A~p~~~  254 (496)
                      +...+++.|.+.+++      .|++|+++++|+++..++++|+ |..   .+|+  .+.|+.||+|+.-..
T Consensus       139 ~g~~~~~~l~~~~~~------~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~  203 (417)
T PF00890_consen  139 GGKALIEALAKAAEE------AGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFG  203 (417)
T ss_dssp             HHHHHHHHHHHHHHH------TTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BG
T ss_pred             cHHHHHHHHHHHHhh------cCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCccc
Confidence            567788888888887      7899999999999999888876 433   3554  578999999987543

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PLN02661 Putative thiazole synthesis

Probab=99.07  E-value=3.1e-09  Score=101.28  Aligned_cols=42  Identities=33%  Similarity=0.573  Sum_probs=37.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-CCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAEN-GIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~-G~~~V~vlEa~~~~GGr~~   47 (496)
                      ..+||+|||||++||+||++|+++ |+ +|+|+|++..+||...
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~~g~-kV~viEk~~~~GGG~~  133 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKNPNV-KVAIIEQSVSPGGGAW  133 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHcCCC-eEEEEecCccccccee
Confidence            468999999999999999999986 89 6999999999988444

>TIGR00275 flavoprotein, HI0933 family

Probab=99.07  E-value=9.2e-10  Score=109.91  Aligned_cols=58  Identities=29%  Similarity=0.363  Sum_probs=47.9

Q ss_pred             ccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          189 RGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       189 ~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      +....+.+.|.+.+.+      .|++|+++++|++|..+++.+.|++ +++++.+|.||+|++..
T Consensus       102 ~~a~~v~~~L~~~l~~------~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~  159 (400)
T TIGR00275       102 DSAADVLDALLNELKE------LGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGL  159 (400)
T ss_pred             CCHHHHHHHHHHHHHH------CCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCc
Confidence            3467788888888776      6999999999999988777777877 45689999999999863

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=99.07  E-value=2e-09  Score=108.52  Aligned_cols=58  Identities=17%  Similarity=0.241  Sum_probs=47.2

Q ss_pred             HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhc
Q 010995          192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQS  257 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~  257 (496)
                      ..|.+.|.+.+.        +..++++++|++|+.++++|+|++.+|.++++|.||.|-......+
T Consensus       105 ~~l~~~L~~~~~--------~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vR  162 (414)
T TIGR03219       105 ADFLDALLKHLP--------EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSALR  162 (414)
T ss_pred             HHHHHHHHHhCC--------CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHHHH
Confidence            456777777652        3568999999999998888999988998999999999998776543

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.06  E-value=8.3e-09  Score=106.28  Aligned_cols=41  Identities=32%  Similarity=0.552  Sum_probs=37.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      ..+||||||||++||+||+.++++|. +|+|||+.+.+||..
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga-~VivlEK~~~~GG~s  100 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGM-NPVILEKMPVAGGNT  100 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCCCCCCcc
Confidence            46799999999999999999999999 699999999999843

>PRK06475 salicylate hydroxylase; Provisional

Probab=99.06  E-value=4.6e-09  Score=105.41  Aligned_cols=166  Identities=20%  Similarity=0.300  Sum_probs=97.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCcc
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRT   85 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~   85 (496)
                      +.+|+|||||++||++|..|+++|+ +|+|+|+.+.+.-             .|.. +.     -.++..++++++|+..
T Consensus         2 ~~~V~IvGgGiaGl~~A~~L~~~G~-~V~i~E~~~~~~~-------------~g~g-i~-----l~~~~~~~L~~~Gl~~   61 (400)
T PRK06475          2 RGSPLIAGAGVAGLSAALELAARGW-AVTIIEKAQELSE-------------VGAG-LQ-----LAPNAMRHLERLGVAD   61 (400)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCccCc-------------CCcc-ce-----eChhHHHHHHHCCChH
Confidence            3789999999999999999999999 6999999864420             1111 11     2356788889999865


Q ss_pred             ccccCCCcceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHHhhcc
Q 010995           86 CFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFE  165 (496)
Q Consensus        86 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (496)
                      ...........++..+|......                   .   ..........                        
T Consensus        62 ~l~~~~~~~~~~~~~~g~~~~~~-------------------~---~~~~~~~~~~------------------------   95 (400)
T PRK06475         62 RLSGTGVTPKALYLMDGRKARPL-------------------L---AMQLGDLARK------------------------   95 (400)
T ss_pred             HHhhcccCcceEEEecCCCcceE-------------------E---Eecchhhhhh------------------------
Confidence            54221111111222222210000                   0   0000000000                        


Q ss_pred             ccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEe---CCCcEEE
Q 010995          166 MAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKT---EDGCVYE  242 (496)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~---~~G~~~~  242 (496)
                                 .++ ..++..   .-..|.+.|.+.+.+.     .+++++++++|+++..++++++|+.   .++++++
T Consensus        96 -----------~~~-~~~~~i---~r~~l~~~L~~~~~~~-----~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~  155 (400)
T PRK06475         96 -----------RWH-HPYIVC---HRADLQSALLDACRNN-----PGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVS  155 (400)
T ss_pred             -----------cCC-CCceeE---CHHHHHHHHHHHHHhc-----CCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEe
Confidence                       000 011111   1234555555554331     4789999999999998888887765   3345799


Q ss_pred             cCEEEEecChHHHhc
Q 010995          243 ANYVILSASIGVLQS  257 (496)
Q Consensus       243 ad~VI~A~p~~~l~~  257 (496)
                      ||.||-|-..+...+
T Consensus       156 adlvIgADG~~S~vR  170 (400)
T PRK06475        156 AAYLIACDGVWSMLR  170 (400)
T ss_pred             cCEEEECCCccHhHH
Confidence            999999998876655

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=99.06  E-value=4.5e-09  Score=96.72  Aligned_cols=59  Identities=22%  Similarity=0.321  Sum_probs=47.3

Q ss_pred             HHHHHHHHHhhccCCCCCccccceeeCceeEEEEE---cCCceEEEeCCCcEEEcCEEEEecChHHHh
Q 010995          192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQH---SRNGVTVKTEDGCVYEANYVILSASIGVLQ  256 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~---~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~  256 (496)
                      .+-++.+...+.+      +|+.++.+..|..+..   ++..+.|.|.+|..+.|+.+|+|+.+...+
T Consensus       153 ~kslk~~~~~~~~------~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k  214 (399)
T KOG2820|consen  153 AKSLKALQDKARE------LGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK  214 (399)
T ss_pred             HHHHHHHHHHHHH------cCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh
Confidence            4455555555555      7999999999999885   345678999999889999999999998765

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.05  E-value=1.1e-09  Score=112.02  Aligned_cols=58  Identities=17%  Similarity=0.175  Sum_probs=44.4

Q ss_pred             ccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEe--CCC--cEEEcCEEEEecCh
Q 010995          189 RGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKT--EDG--CVYEANYVILSASI  252 (496)
Q Consensus       189 ~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~--~~G--~~~~ad~VI~A~p~  252 (496)
                      ++...++..|.+.+.+      .|++|+++++|++|..++++|. |.+  .+|  ..+.|+.||+|+..
T Consensus       128 g~g~~l~~~l~~~~~~------~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg  190 (466)
T PRK08274        128 GGGKALVNALYRSAER------LGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGG  190 (466)
T ss_pred             CCHHHHHHHHHHHHHH------CCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence            3456678888877766      7999999999999998777665 444  233  36799999999863

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=99.05  E-value=2.8e-09  Score=106.68  Aligned_cols=58  Identities=24%  Similarity=0.164  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHhhccCCCCCccc-cceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILD-NRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVL  255 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l  255 (496)
                      ...+++.|++.+.+      .| ..+..+++|..++.+++.+.|.|.+|+ +.||+||+|+....-
T Consensus       155 p~~~~~~l~~~~~~------~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~  213 (387)
T COG0665         155 PRLLTRALAAAAEE------LGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAG  213 (387)
T ss_pred             HHHHHHHHHHHHHh------cCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHH
Confidence            35688888888776      67 566679999999986344668898885 999999999987654

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.04  E-value=1.2e-08  Score=103.80  Aligned_cols=38  Identities=32%  Similarity=0.638  Sum_probs=35.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC-CCcEEEEeeCCCCCeEE
Q 010995            8 PVIIIGAGVSGISAGKILAENG-IEDILILEASDRIGGRV   46 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G-~~~V~vlEa~~~~GGr~   46 (496)
                      ||||||||++||+||+.++++| . +|+|||+.+..||..
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~-~V~vlEk~~~~gg~s   39 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAA-NVVLLEKMPVIGGNS   39 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCc-cEEEEecCCCCCCcc
Confidence            8999999999999999999999 9 699999999988853

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=99.03  E-value=4.3e-09  Score=105.03  Aligned_cols=64  Identities=33%  Similarity=0.493  Sum_probs=47.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCcc
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRT   85 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~   85 (496)
                      .+||+|||||++||++|..|+++|+ +|+|+|+.+..-      ..    -+.|+..+.       .+..++++++|+..
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~~~~------~~----~~~~a~~l~-------~~~~~~L~~lGl~~   63 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQSRDY------VL----GRIRAGVLE-------QGTVDLLREAGVDE   63 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCC-CEEEEECCCCcc------cC----CceeEeeEC-------HHHHHHHHHCCChH
Confidence            5799999999999999999999999 699999987420      00    022333332       34778999999876


Q ss_pred             cc
Q 010995           86 CF   87 (496)
Q Consensus        86 ~~   87 (496)
                      ..
T Consensus        64 ~l   65 (390)
T TIGR02360        64 RM   65 (390)
T ss_pred             HH
Confidence            55

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=99.00  E-value=2.2e-08  Score=95.29  Aligned_cols=36  Identities=31%  Similarity=0.688  Sum_probs=33.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      +.+||||||||+||++|..|+++|+ +|+|||+++.+
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~-~v~VlE~~e~~   37 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGI-DVVVLESREDP   37 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCC-eEEEEeecccc
Confidence            5789999999999999999999999 79999998655

>PRK07121 hypothetical protein; Validated

Probab=98.99  E-value=1.8e-08  Score=103.80  Aligned_cols=41  Identities=29%  Similarity=0.532  Sum_probs=37.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      ..+||||||||++||+||..++++|. +|+|||+....||..
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~-~VillEK~~~~gG~s   59 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGA-RVLVLERAAGAGGAT   59 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCCCCCCcc
Confidence            46899999999999999999999999 699999999988854

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.96  E-value=9.3e-09  Score=102.15  Aligned_cols=43  Identities=33%  Similarity=0.624  Sum_probs=39.5

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      ...++|+|||||.|||++|++|.+.|+ +|+|+||++.+||.-.
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~-~v~vfEr~~~iGGlW~   46 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLREGH-EVVVFERTDDIGGLWK   46 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHHCCC-CceEEEecCCccceEe
Confidence            457899999999999999999999999 6999999999999544

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.95  E-value=1e-07  Score=95.56  Aligned_cols=58  Identities=21%  Similarity=0.388  Sum_probs=46.5

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEec
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAG   65 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~   65 (496)
                      ...+||+||||||+|+.+|+.++-+|+ +|+|+|++|...|....   ....+.-|..|+..
T Consensus        10 ~~~~DviVIGGGitG~GiArDaA~RGl-~v~LvE~~D~AsGTSsr---stkLiHGGlRYl~~   67 (532)
T COG0578          10 MEEFDVIVIGGGITGAGIARDAAGRGL-KVALVEKGDLASGTSSR---STKLIHGGLRYLEQ   67 (532)
T ss_pred             ccCCCEEEECCchhhHHHHHHHHhCCC-eEEEEecCcccCcccCc---cccCccchhhhhhh
Confidence            367999999999999999999999999 69999999998874432   22345556666654

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.94  E-value=1e-08  Score=107.81  Aligned_cols=39  Identities=23%  Similarity=0.418  Sum_probs=35.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      ..+||+|||||+.|+++|+.|+++|+ +|+|+|+.+..+|
T Consensus        70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl-~V~LvE~~d~a~G  108 (627)
T PLN02464         70 EPLDVLVVGGGATGAGVALDAATRGL-RVGLVEREDFSSG  108 (627)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCC-EEEEEeccccCCC
Confidence            45899999999999999999999999 6999999976666

>PRK09897 hypothetical protein; Provisional

Probab=98.93  E-value=1.5e-08  Score=103.40  Aligned_cols=56  Identities=11%  Similarity=0.134  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHhhccCCCCCccc--cceeeCceeEEEEEcCCceEEEeCC-CcEEEcCEEEEecCh
Q 010995          191 YAHLLYKMAEEFLSTSDGKILD--NRLKLNKVVRELQHSRNGVTVKTED-GCVYEANYVILSASI  252 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g--~~i~~~~~V~~I~~~~~~v~V~~~~-G~~~~ad~VI~A~p~  252 (496)
                      ++...+.+.+.+..      .|  ++++.+++|++|+.+++++.|++.+ |..+.||+||+|+..
T Consensus       106 L~~~f~~l~~~a~~------~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh  164 (534)
T PRK09897        106 FRDQFLRLVDQARQ------QKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGH  164 (534)
T ss_pred             HHHHHHHHHHHHHH------cCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCC
Confidence            44555555555443      45  6788999999999988889988855 467999999999974

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.92  E-value=3.3e-09  Score=108.71  Aligned_cols=37  Identities=49%  Similarity=0.791  Sum_probs=32.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      ++|+|||||+|||+||..|.+.|+ +|+++|+++.+||
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~-~~~~fE~~~~iGG   38 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGL-EVTCFEKSDDIGG   38 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT--EEEEEESSSSSSG
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-CCeEEecCCCCCc
Confidence            689999999999999999999999 7999999999999

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.91  E-value=3.3e-08  Score=101.16  Aligned_cols=43  Identities=23%  Similarity=0.416  Sum_probs=39.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN   48 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t   48 (496)
                      .++||+|||||++|++||++|++.|. +|+|+|+++.+||.+..
T Consensus         4 ~~yDvvVIGaGpaG~~aA~~la~~G~-~v~liE~~~~~GG~~~~   46 (461)
T PRK05249          4 YDYDLVVIGSGPAGEGAAMQAAKLGK-RVAVIERYRNVGGGCTH   46 (461)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-EEEEEeccccccccccc
Confidence            57999999999999999999999999 79999999999998754

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.90  E-value=5.8e-07  Score=88.76  Aligned_cols=36  Identities=33%  Similarity=0.535  Sum_probs=33.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeCCCCCe
Q 010995            8 PVIIIGAGVSGISAGKILAEN--GIEDILILEASDRIGG   44 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~~~~GG   44 (496)
                      ||+|||||+|||++|+.|+++  |+ +|+|+|+++.+||
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~-~V~lle~~~~~~~   38 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDF-RIRVIEAGRTIGG   38 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCC-eEEEEeCCCCCCC
Confidence            899999999999999999997  99 6999999987765

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.90  E-value=1.5e-08  Score=97.50  Aligned_cols=42  Identities=26%  Similarity=0.331  Sum_probs=36.9

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .|+++++ ++|++|+.+++.+.|.+.+|.++.+|+||+|+...
T Consensus        70 ~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~  111 (300)
T TIGR01292        70 FGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGAS  111 (300)
T ss_pred             cCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCC
Confidence            5788988 89999999888888888888899999999999863

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=98.89  E-value=3.6e-08  Score=97.45  Aligned_cols=223  Identities=20%  Similarity=0.281  Sum_probs=124.5

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeC---------------------CcEEeecceE
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFG---------------------GVSVELGAGW   62 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~---------------------g~~~d~G~~~   62 (496)
                      +..+||||+|-|+.-.-.|..|++.|. +|+.+|+++..||...|.+..                     .+.+|+-+..
T Consensus         2 ~~~yDviI~GTGl~esila~als~~Gk-kVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKl   80 (438)
T PF00996_consen    2 DEEYDVIILGTGLTESILAAALSRSGK-KVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKL   80 (438)
T ss_dssp             -SBESEEEE--SHHHHHHHHHHHHTT---EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--B
T ss_pred             CccceEEEECCCcHHHHHHHHHHhcCC-EEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHh
Confidence            358999999999999999999999999 699999999999999886521                     2678998888


Q ss_pred             EecCCCCCCChHHHHHHhcCCccccccCCCcceEEEcCCCcc--cChhHHH------------HHHHHHHHHHHHHhccc
Q 010995           63 IAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKI--IPSGVAA------------DSYKKAVESAIANLKNL  128 (496)
Q Consensus        63 ~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~--~~~~~~~------------~~~~~~~~~~~~~~~~~  128 (496)
                      +..     ..++.+++-+-++.... +|......+...+|++  +|....+            ..+.+++........+.
T Consensus        81 l~a-----~g~LV~lLi~S~V~rYL-EFk~V~~~~v~~~~~l~kVP~sr~dvf~s~~lsl~eKR~lmkFl~~v~~~~~~~  154 (438)
T PF00996_consen   81 LYA-----RGPLVKLLISSGVTRYL-EFKAVDGSYVYKNGKLHKVPCSREDVFKSKLLSLFEKRRLMKFLKFVANYEEDD  154 (438)
T ss_dssp             EET-----TSHHHHHHHHCTGGGGS-EEEEESEEEEEETTEEEE--SSHHHHHC-TTS-HHHHHHHHHHHHHHHHGCTTB
T ss_pred             hhc-----cCHHHHHHHhCCcccce-EEEEcceeEEEeCCEEeeCCCCHHHhhcCCCccHHHHHHHHHHHHHHhhcccCC
Confidence            874     67888888888887665 3332222233346655  3321111            11111222211111111


Q ss_pred             c-------ccchhHHHHHHhhhcCCCCCCChHHHHHHHHHhhccccccC---------C-------cccccccCCcceee
Q 010995          129 E-------ATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAEVE---------P-------ISTYVDFGEREFLV  185 (496)
Q Consensus       129 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-------~~~~~~~~~~~~~~  185 (496)
                      +       .....+.++++.+        .......+++...+.+..-.         .       +.+...||...++ 
T Consensus       155 ~~~~~~~~~~~~~~~e~~~~f--------~L~~~~~~~i~haiaL~~~~~~~~~p~~~~l~ri~~yl~SlgryG~sPfL-  225 (438)
T PF00996_consen  155 PSTHKGLDPEKKTFQELLKKF--------GLSENLIDFIGHAIALSLDDSYLTEPAREGLERIKLYLSSLGRYGKSPFL-  225 (438)
T ss_dssp             GGGSTTG-TTTSBHHHHHHHT--------TS-HHHHHHHHHHTS-SSSSGGGGSBSHHHHHHHHHHHHHHCCCSSSSEE-
T ss_pred             cchhhccccccccHHHHHHhc--------CCCHHHHHHHHHhhhhccCcccccccHHHHHHHHHHHHHHHhccCCCCEE-
Confidence            1       1112356666541        11223333333222211100         0       1122346666555 


Q ss_pred             eCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcC-CceE-EEeCCCcEEEcCEEEEe
Q 010995          186 ADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSR-NGVT-VKTEDGCVYEANYVILS  249 (496)
Q Consensus       186 ~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~-~~v~-V~~~~G~~~~ad~VI~A  249 (496)
                      ++.-|.+.|++.+++..--      .|+...+|++|.+|..++ +++. |.+ +|+++.|++||..
T Consensus       226 yP~YG~GELpQ~FcRl~AV------~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~d  284 (438)
T PF00996_consen  226 YPLYGLGELPQAFCRLSAV------YGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIGD  284 (438)
T ss_dssp             EETT-TTHHHHHHHHHHHH------TT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEEE
T ss_pred             EEccCCccHHHHHHHHhhh------cCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEEC
Confidence            4556788999999876544      699999999999999854 4444 555 7889999999963

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.88  E-value=1.2e-07  Score=99.33  Aligned_cols=46  Identities=30%  Similarity=0.571  Sum_probs=41.8

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      |.....+||+|||||++||+||+.++++|. +|+|+|+....||...
T Consensus         4 ~~~~~~~DVvVVG~G~aGl~AA~~aa~~G~-~v~llEk~~~~gG~~~   49 (574)
T PRK12842          4 MTNELTCDVLVIGSGAGGLSAAITARKLGL-DVVVLEKEPVFGGTTA   49 (574)
T ss_pred             cCcCCCCCEEEECcCHHHHHHHHHHHHcCC-eEEEEecCCCCCCccc
Confidence            556678999999999999999999999999 6999999999998655

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.88  E-value=2e-08  Score=102.71  Aligned_cols=40  Identities=33%  Similarity=0.488  Sum_probs=35.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC-CCCCeE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS-DRIGGR   45 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~-~~~GGr   45 (496)
                      ..+||+|||||.||+.||+.+++.|. +|+|+|++ +.+|+.
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR~G~-kV~LiE~~~d~iG~m   43 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAARMGA-KTLLLTHNLDTIGQM   43 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHHcCC-cEEEEeccccccccc
Confidence            46999999999999999999999999 69999997 467653

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.88  E-value=4.7e-08  Score=83.98  Aligned_cols=42  Identities=21%  Similarity=0.331  Sum_probs=35.3

Q ss_pred             ccccee-eCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecCh
Q 010995          211 LDNRLK-LNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASI  252 (496)
Q Consensus       211 ~g~~i~-~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~  252 (496)
                      .|++|. ...+|++|...++++.|.+.+|..+.||+||+|+..
T Consensus       113 ~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  113 AGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             CCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence            355554 567999999999999999999999999999999863

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.87  E-value=2.6e-08  Score=100.38  Aligned_cols=48  Identities=38%  Similarity=0.705  Sum_probs=40.7

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeee
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKF   51 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~   51 (496)
                      ..++||+|||||.|||++|++|.++|..+++||||++++||.=+..+.
T Consensus         6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry   53 (443)
T COG2072           6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRY   53 (443)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccC
Confidence            457899999999999999999999999339999999999995443333

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=98.85  E-value=5.8e-08  Score=101.03  Aligned_cols=58  Identities=21%  Similarity=0.225  Sum_probs=45.4

Q ss_pred             HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhc
Q 010995          192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQS  257 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~  257 (496)
                      ..|.+.|.+.+.        ...++++++|++|+.++++|+|++.+|+++++|.||.|-......+
T Consensus       194 ~~L~~~L~~alg--------~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S~vR  251 (668)
T PLN02927        194 MTLQQILARAVG--------EDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSKVR  251 (668)
T ss_pred             HHHHHHHHhhCC--------CCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCcHHH
Confidence            356666666632        2247889999999999999999999998899999999998765443

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.85  E-value=1.8e-07  Score=96.58  Aligned_cols=40  Identities=28%  Similarity=0.659  Sum_probs=37.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      ..+|||||||| +||+||++++++|. +|+|||+.+..||..
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~-~V~vlEk~~~~Gg~t   45 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGL-SVALVEATDKFGGTT   45 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCC-cEEEEecCCCCCcce
Confidence            57899999999 99999999999999 699999999888854

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.84  E-value=1e-07  Score=96.24  Aligned_cols=39  Identities=23%  Similarity=0.394  Sum_probs=34.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR   45 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr   45 (496)
                      ..+||+|||+|.|||+||..++ +|. +|+|+|+.+..||.
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~G~-~V~lleK~~~~gg~   41 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-KDL-KILMVSKGKLNECN   41 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-cCC-CEEEEecCCCCCCc
Confidence            4689999999999999999985 799 69999999887773

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.83  E-value=1.6e-07  Score=88.79  Aligned_cols=44  Identities=27%  Similarity=0.533  Sum_probs=37.8

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHC------CCCcEEEEeeCCCCCeEEEe
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAEN------GIEDILILEASDRIGGRVRN   48 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~------G~~~V~vlEa~~~~GGr~~t   48 (496)
                      ...+||+|||||.|||+||.+|.+.      .+ +|+|+|+...+||.+-|
T Consensus        74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dl-rVcvvEKaa~~GghtlS  123 (621)
T KOG2415|consen   74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDL-RVCVVEKAAEVGGHTLS  123 (621)
T ss_pred             hccccEEEECCCchhHHHHHHHHHHHHhcCCce-EEEEEeeccccCCceec
Confidence            3568999999999999999999763      35 69999999999997665

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.81  E-value=2.8e-07  Score=96.51  Aligned_cols=43  Identities=28%  Similarity=0.558  Sum_probs=39.2

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      ...+||+|||+|.+|++||+.++++|. +|+|+|+.+.+||.+.
T Consensus        10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~-~v~~iek~~~~gg~~~   52 (581)
T PRK06134         10 DLECDVLVIGSGAAGLSAAVTAAWHGL-KVIVVEKDPVFGGTTA   52 (581)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCC-eEEEEecCCCCCcccc
Confidence            347899999999999999999999999 6999999999998654

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.81  E-value=1.7e-08  Score=97.81  Aligned_cols=41  Identities=27%  Similarity=0.274  Sum_probs=34.3

Q ss_pred             cccceeeCceeEEEEEcCCceE-EEeCCCcEEEcCEEEEecCh
Q 010995          211 LDNRLKLNKVVRELQHSRNGVT-VKTEDGCVYEANYVILSASI  252 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~A~p~  252 (496)
                      .+.+|. ..+|++|..++++|. |.+.+|..+.+|.||+|+..
T Consensus       109 ~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen  109 PNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             TTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             CCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence            566674 689999999999877 99999999999999999988

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.81  E-value=6.1e-08  Score=100.30  Aligned_cols=44  Identities=20%  Similarity=0.228  Sum_probs=38.7

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      .|++++++++|++|...++.+.|.+.+|.++.||.||+|++...
T Consensus       279 ~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~  322 (517)
T PRK15317        279 YDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARW  322 (517)
T ss_pred             CCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCc
Confidence            57889999999999998778888888888899999999998843

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.81  E-value=5e-08  Score=100.84  Aligned_cols=43  Identities=21%  Similarity=0.248  Sum_probs=38.0

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .|++++++++|++|..+++.+.|++.+|..+.+|++|+|++..
T Consensus       280 ~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~  322 (515)
T TIGR03140       280 YPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGAR  322 (515)
T ss_pred             hCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence            5789999999999998777788888888889999999999875

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.79  E-value=9.2e-08  Score=100.25  Aligned_cols=40  Identities=20%  Similarity=0.483  Sum_probs=36.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC---CCcEEEEeeCCCCCeE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENG---IEDILILEASDRIGGR   45 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G---~~~V~vlEa~~~~GGr   45 (496)
                      ..+||+|||||+|||+||..++++|   . +|+|+|+....||.
T Consensus         4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~-~V~lleK~~~~~~~   46 (577)
T PRK06069          4 LKYDVVIVGSGLAGLRAAVAAAERSGGKL-SVAVVSKTQPMRSH   46 (577)
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCCC-cEEEEEcccCCCCC
Confidence            4689999999999999999999998   8 69999999887773

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.78  E-value=3.6e-07  Score=94.96  Aligned_cols=41  Identities=29%  Similarity=0.630  Sum_probs=37.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      ..+||||||+| +||+||...+++|. +|+|+|+.+.+||.+.
T Consensus        15 ~e~DvvvvG~G-~G~~aA~~a~~~G~-~v~v~Ek~~~~GG~~~   55 (564)
T PRK12845         15 TTVDLLVVGSG-TGMAAALAAHELGL-SVLIVEKSSYVGGSTA   55 (564)
T ss_pred             ceeCEEEECCc-HHHHHHHHHHHCCC-cEEEEecCCCCcCccc
Confidence            47899999999 99999999999999 6999999999999554

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.76  E-value=1.6e-07  Score=99.07  Aligned_cols=39  Identities=28%  Similarity=0.457  Sum_probs=35.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      ..+||+|||||+|||+||..++++|. +|+|+|+...+|+
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G~-~VilieK~~~~~~   72 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELGY-NVKVFCYQDSPRR   72 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCC-cEEEEecCCCCCc
Confidence            35799999999999999999999999 6999999877753

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.76  E-value=1.5e-07  Score=97.95  Aligned_cols=41  Identities=32%  Similarity=0.665  Sum_probs=37.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      ..+||+|||+|.+||+||..|+++|. +|+|||+.+..||.+
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G~-~v~liEk~~~~gG~~   45 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSGL-EPLIVEKQDKVGGST   45 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCCCcee
Confidence            47899999999999999999999999 699999999889854

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.76  E-value=1.3e-07  Score=99.71  Aligned_cols=39  Identities=26%  Similarity=0.307  Sum_probs=35.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      ..+||+|||||+|||+||..++++|. +|+|+|+....||
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae~G~-~V~lieK~~~~~g   45 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARERGL-RVAVVCKSLFGKA   45 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHHCCC-CEEEEeccCCCCC
Confidence            45899999999999999999999999 6999999987665

>PRK12839 hypothetical protein; Provisional

Probab=98.75  E-value=7e-07  Score=93.08  Aligned_cols=44  Identities=30%  Similarity=0.533  Sum_probs=40.0

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            3 STSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         3 ~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      ....+||+|||+|.+||+||+.|+++|. +|+|+|+.+.+||.+.
T Consensus         5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~-~v~~iek~~~~gg~~~   48 (572)
T PRK12839          5 MTHTYDVVVVGSGAGGLSAAVAAAYGGA-KVLVVEKASTCGGATA   48 (572)
T ss_pred             cCCcCCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCCCcccc
Confidence            4557899999999999999999999999 6999999999999764

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.75  E-value=1.2e-07  Score=99.52  Aligned_cols=37  Identities=24%  Similarity=0.464  Sum_probs=34.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR   45 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr   45 (496)
                      ||+|||||+|||+||..++++|. +|+|+|+....||.
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~-~V~lleK~~~~~g~   37 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGL-NTAVISKVYPTRSH   37 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCC-cEEEEeccCCCCCc
Confidence            89999999999999999999999 69999998877763

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.75  E-value=5.3e-07  Score=94.09  Aligned_cols=39  Identities=15%  Similarity=0.374  Sum_probs=35.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      ..+||+|||||+|||+||..++++|. +|+|+|+....||
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae~G~-~V~lveK~~~~~g   42 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIASAGF-KVAVISKVFPTRS   42 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHHCCC-cEEEEEccCCCCC
Confidence            46899999999999999999999999 6999999887666

>PRK06116 glutathione reductase; Validated

Probab=98.75  E-value=1.6e-07  Score=95.79  Aligned_cols=55  Identities=22%  Similarity=0.320  Sum_probs=43.3

Q ss_pred             HHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCc-eEEEeCCCcEEEcCEEEEecChH
Q 010995          193 HLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNG-VTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       193 ~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .+.+.+.+.+.+      .|++++++++|++|+.++++ +.|.+.+|+++.+|.||+|++..
T Consensus       209 ~~~~~l~~~L~~------~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~  264 (450)
T PRK06116        209 DIRETLVEEMEK------KGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGRE  264 (450)
T ss_pred             HHHHHHHHHHHH------CCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCC
Confidence            345555555555      69999999999999986555 77888888889999999998643

>PLN02985 squalene monooxygenase

Probab=98.75  E-value=2.4e-07  Score=95.23  Aligned_cols=64  Identities=30%  Similarity=0.446  Sum_probs=46.9

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGL   83 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl   83 (496)
                      ...+||+|||||++|+++|+.|+++|+ +|+|+|+......+.           . +..       -.++-.++++++|+
T Consensus        41 ~~~~DViIVGAG~aGlalA~aLa~~G~-~V~vlEr~~~~~~~~-----------~-g~~-------L~p~g~~~L~~LGl  100 (514)
T PLN02985         41 DGATDVIIVGAGVGGSALAYALAKDGR-RVHVIERDLREPERM-----------M-GEF-------MQPGGRFMLSKLGL  100 (514)
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHcCC-eEEEEECcCCCCccc-----------c-ccc-------cCchHHHHHHHcCC
Confidence            356899999999999999999999999 699999975321110           0 111       23346678889998


Q ss_pred             cccc
Q 010995           84 RTCF   87 (496)
Q Consensus        84 ~~~~   87 (496)
                      ....
T Consensus       101 ~d~l  104 (514)
T PLN02985        101 EDCL  104 (514)
T ss_pred             cchh
Confidence            7654

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.74  E-value=3.7e-07  Score=95.44  Aligned_cols=40  Identities=33%  Similarity=0.640  Sum_probs=37.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR   45 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr   45 (496)
                      ..+||+|||+|++||+||..++++|. +|+|||+.+..||.
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~G~-~VivlEk~~~~gG~   49 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAARGL-DTLVVEKSAHFGGS   49 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCC-cEEEEEcCCCCCch
Confidence            46899999999999999999999999 69999999988883

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.73  E-value=3.7e-07  Score=94.81  Aligned_cols=39  Identities=23%  Similarity=0.496  Sum_probs=36.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      ..+||+|||||+|||+||..++++|. +|+|+|+....||
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~-~VilleK~~~~~g   53 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGR-RVLVVTKAALDDG   53 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCC-eEEEEEccCCCCC
Confidence            46899999999999999999999999 6999999988776

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.73  E-value=4.9e-06  Score=80.44  Aligned_cols=58  Identities=26%  Similarity=0.377  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCCCcEEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      +-.+++.+.+.|++      .|++|+++++|.+|+..++.+. |.+.+|+++.+|+||+|+.-..
T Consensus       172 l~~vvkni~~~l~~------~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg  230 (486)
T COG2509         172 LPKVVKNIREYLES------LGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSG  230 (486)
T ss_pred             hHHHHHHHHHHHHh------cCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcch
Confidence            56678888888887      8999999999999999988655 8888999999999999997543

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.73  E-value=1.3e-07  Score=94.43  Aligned_cols=57  Identities=23%  Similarity=0.141  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCc-eEEEeCCCcEEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNG-VTVKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      -..++++|+..+..      .|+.|..|++|++|....++ +.|.|..| .|++.+||.|+....
T Consensus       186 P~~lC~ala~~A~~------~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWA  243 (856)
T KOG2844|consen  186 PAGLCQALARAASA------LGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWA  243 (856)
T ss_pred             HHHHHHHHHHHHHh------cCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHH
Confidence            45688888888777      89999999999999987665 45999998 899999999998754

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.72  E-value=7.5e-07  Score=92.89  Aligned_cols=42  Identities=33%  Similarity=0.679  Sum_probs=38.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC--CCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD--RIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~--~~GGr~~   47 (496)
                      ..+||+|||+|.|||+||..++++|. +|+|||+.+  ..||.+.
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~-~VivlEK~~~~~~GG~s~   46 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGK-RVLLLDQENEANLGGQAF   46 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCCCCCCCCcee
Confidence            47899999999999999999999999 699999999  7888553

>PTZ00367 squalene epoxidase; Provisional

Probab=98.72  E-value=2.4e-07  Score=95.79  Aligned_cols=64  Identities=22%  Similarity=0.268  Sum_probs=46.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCc
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLR   84 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~   84 (496)
                      ..+||+|||||++|+++|+.|+++|+ +|+|+|+....-        .+.  ..| ..       -.++-.++++++|+.
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~-~V~VlEr~~~~~--------~~r--~~G-~~-------L~p~g~~~L~~LGL~   92 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGR-KVLMLERDLFSK--------PDR--IVG-EL-------LQPGGVNALKELGME   92 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCC-EEEEEccccccc--------cch--hhh-hh-------cCHHHHHHHHHCCCh
Confidence            56899999999999999999999999 799999864100        000  011 11       234677889999997


Q ss_pred             ccc
Q 010995           85 TCF   87 (496)
Q Consensus        85 ~~~   87 (496)
                      ...
T Consensus        93 d~l   95 (567)
T PTZ00367         93 ECA   95 (567)
T ss_pred             hhH
Confidence            654

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.71  E-value=1.2e-07  Score=99.35  Aligned_cols=57  Identities=18%  Similarity=0.108  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-E---EeCCCc--EEEcCEEEEecChH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-V---KTEDGC--VYEANYVILSASIG  253 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V---~~~~G~--~~~ad~VI~A~p~~  253 (496)
                      -..+.+.|.+.+.+      .|++|++++.|+++..++++|. +   ...+|+  .+.|+.||+|+.-.
T Consensus       134 G~~i~~~L~~~~~~------~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~  196 (575)
T PRK05945        134 GHAILHELVNNLRR------YGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGY  196 (575)
T ss_pred             hHHHHHHHHHHHhh------CCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence            35677888877765      6899999999999987766644 2   334553  58999999999764

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.71  E-value=1.7e-07  Score=97.52  Aligned_cols=56  Identities=14%  Similarity=0.115  Sum_probs=41.9

Q ss_pred             HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCc-eE-EE--e-CCCc--EEEcCEEEEecChH
Q 010995          192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNG-VT-VK--T-EDGC--VYEANYVILSASIG  253 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v~-V~--~-~~G~--~~~ad~VI~A~p~~  253 (496)
                      ..+.+.|.+.+.+      .|++|++++.|+++..++++ |. |.  . .+|+  .+.|+.||+|+.-.
T Consensus       134 ~~i~~~L~~~~~~------~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~  196 (543)
T PRK06263        134 HEMMMGLMEYLIK------ERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA  196 (543)
T ss_pred             HHHHHHHHHHHhc------CCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence            4577777777665      68999999999999877654 54 32  2 4553  58999999999753

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.71  E-value=5.7e-07  Score=94.62  Aligned_cols=39  Identities=21%  Similarity=0.236  Sum_probs=35.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      ..+||+|||||+|||+||..++++|. +|+|+|+....||
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~-~V~lveK~~~~~g   66 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVELGY-KTACISKLFPTRS   66 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCC-cEEEEeccCCCCC
Confidence            36799999999999999999999999 6999999887776

>TIGR00551 nadB L-aspartate oxidase

Probab=98.70  E-value=1.9e-07  Score=95.94  Aligned_cols=38  Identities=32%  Similarity=0.620  Sum_probs=34.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR   45 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr   45 (496)
                      .+||+|||||+|||+||..+++.|.  |+|+|+.+..||.
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~G~--V~lleK~~~~~g~   39 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQGR--VIVLSKAPVTEGN   39 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhCCC--EEEEEccCCCCCc
Confidence            5799999999999999999999994  9999999877773

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.70  E-value=8.5e-07  Score=92.46  Aligned_cols=42  Identities=24%  Similarity=0.543  Sum_probs=38.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      ..+||+|||+|.+|++||..++++|. +|+|||+.+.+||.+.
T Consensus         6 ~~~DvvVvG~G~aG~~aA~~aa~~G~-~v~llEk~~~~gG~~~   47 (557)
T PRK07843          6 QEYDVVVVGSGAAGMVAALTAAHRGL-STVVVEKAPHYGGSTA   47 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCCCCcccc
Confidence            47899999999999999999999999 6999999998888543

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.69  E-value=4.7e-09  Score=105.79  Aligned_cols=38  Identities=29%  Similarity=0.623  Sum_probs=32.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      ||||||||++|++||..++++|. +|+|+|+.+.+||..
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~-~VlLiE~~~~lGG~~   38 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGA-KVLLIEKGGFLGGMA   38 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS--EEEE-SSSSSTGGG
T ss_pred             CEEEECccHHHHHHHHHHHHCCC-EEEEEECCccCCCcc
Confidence            79999999999999999999999 699999999999943

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.69  E-value=9.8e-08  Score=96.72  Aligned_cols=57  Identities=12%  Similarity=0.074  Sum_probs=44.7

Q ss_pred             ccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEc--CCceE-EEeC-CCcEEEcCEEEEecC
Q 010995          189 RGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHS--RNGVT-VKTE-DGCVYEANYVILSAS  251 (496)
Q Consensus       189 ~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~--~~~v~-V~~~-~G~~~~ad~VI~A~p  251 (496)
                      ++...+++.|.+.+++      .|++|+++++|++|..+  ++++. |.+. ++..+.|+.||+|+.
T Consensus       120 ~~g~~l~~~L~~~a~~------~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtG  180 (432)
T TIGR02485       120 GGGKALTNALYSSAER------LGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAG  180 (432)
T ss_pred             CCHHHHHHHHHHHHHH------cCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCC
Confidence            4567788888888777      79999999999999876  34454 4443 335789999999998

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.68  E-value=3.6e-07  Score=95.90  Aligned_cols=39  Identities=23%  Similarity=0.344  Sum_probs=35.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      ..+||+|||||+|||+||..+++.|. +|+|+|+....||
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~-~V~lveK~~~~~g   49 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAEAGL-KTACITKVFPTRS   49 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCC-cEEEEEccCCCCc
Confidence            35799999999999999999999999 6999999876666

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=2.6e-07  Score=87.73  Aligned_cols=42  Identities=26%  Similarity=0.406  Sum_probs=34.2

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      .|.++.. ..|.+++..++.+.|+|.+|. ++|++||+|+....
T Consensus        74 ~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~  115 (305)
T COG0492          74 FGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGA  115 (305)
T ss_pred             cCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcc
Confidence            5667766 778888887767789999985 99999999997754

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.67  E-value=2.4e-07  Score=96.92  Aligned_cols=39  Identities=21%  Similarity=0.314  Sum_probs=35.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      ..+||+|||||+|||+||..++++|. +|+|+|+....||
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~-~V~lleK~~~~~g   44 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQSGQ-SCALLSKVFPTRS   44 (588)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCC-cEEEEEccCCCCC
Confidence            45799999999999999999999999 6999999977766

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.65  E-value=1.9e-07  Score=85.49  Aligned_cols=41  Identities=37%  Similarity=0.669  Sum_probs=36.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      ..-|||||+|+|||+|+..|...|- .|+++|+...+||..-
T Consensus         9 lspvvVIGgGLAGLsasn~iin~gg-~V~llek~~s~GGNSi   49 (477)
T KOG2404|consen    9 LSPVVVIGGGLAGLSASNDIINKGG-IVILLEKAGSIGGNSI   49 (477)
T ss_pred             CCcEEEECCchhhhhhHHHHHhcCC-eEEEEeccCCcCCcce
Confidence            3469999999999999999999988 6999999999999544

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.65  E-value=9.2e-07  Score=90.28  Aligned_cols=56  Identities=13%  Similarity=0.062  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCCCcEEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      ...+.+.|.+.+.+      .|++++.+ .|+.+..+++++. |.+ +|+.+.+|.||+|+.-..
T Consensus       119 G~~i~~~L~~~~~~------~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~  175 (466)
T PRK08401        119 GKHIIKILYKHARE------LGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFS  175 (466)
T ss_pred             hHHHHHHHHHHHHh------cCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCc
Confidence            34677888777766      68899876 7888877666765 554 566899999999997644

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.65  E-value=5e-07  Score=95.55  Aligned_cols=39  Identities=23%  Similarity=0.456  Sum_probs=35.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      ..+||+|||||+|||+||..++++|. +|+|+|+....+|
T Consensus         4 ~~~DVlVIG~G~AGl~AAi~Aae~G~-~VivleK~~~~~s   42 (657)
T PRK08626          4 IYTDALVIGAGLAGLRVAIAAAQRGL-DTIVLSLVPAKRS   42 (657)
T ss_pred             eeccEEEECccHHHHHHHHHHHHcCC-CEEEEeCCCCCCc
Confidence            46899999999999999999999999 6999999877665

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.65  E-value=3e-07  Score=95.40  Aligned_cols=40  Identities=18%  Similarity=0.338  Sum_probs=35.4

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR   45 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr   45 (496)
                      ...+||+|||+|+|||+||..++ .|. +|+|+|+.+..||.
T Consensus         7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~-~V~lieK~~~~gg~   46 (553)
T PRK07395          7 PSQFDVLVVGSGAAGLYAALCLP-SHL-RVGLITKDTLKTSA   46 (553)
T ss_pred             cccCCEEEECccHHHHHHHHHhh-cCC-CEEEEEccCCCCCc
Confidence            45789999999999999999996 599 69999999887773

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.63  E-value=1.9e-06  Score=83.92  Aligned_cols=61  Identities=23%  Similarity=0.346  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCc-eEEEeC-----CCcEEEcCEEEEecChHHHh
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNG-VTVKTE-----DGCVYEANYVILSASIGVLQ  256 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v~V~~~-----~G~~~~ad~VI~A~p~~~l~  256 (496)
                      ++.|.+.|.+.+.++     .|.++++|++|++|++.+++ |.|++.     +..++.|+.|++...-..|.
T Consensus       180 FG~LTr~l~~~l~~~-----~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~  246 (488)
T PF06039_consen  180 FGALTRQLVEYLQKQ-----KGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALP  246 (488)
T ss_pred             HHHHHHHHHHHHHhC-----CCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHH
Confidence            788999998888774     58999999999999998766 887653     23579999999998766653

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.62  E-value=4.1e-07  Score=94.97  Aligned_cols=40  Identities=23%  Similarity=0.404  Sum_probs=35.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeCCCCCeEE
Q 010995            6 RSPVIIIGAGVSGISAGKILAEN--GIEDILILEASDRIGGRV   46 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~~~~GGr~   46 (496)
                      .+||+|||||+|||+||..++++  |. +|+|+|+....||.+
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~-~V~lveK~~~~~~~s   44 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHL-DVALISKVYPMRSHT   44 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCC-cEEEEEccCCCCCCc
Confidence            57999999999999999999987  57 699999998887743

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.61  E-value=4.6e-07  Score=90.13  Aligned_cols=55  Identities=20%  Similarity=0.149  Sum_probs=43.7

Q ss_pred             HHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCCC--cEEEcCEEEEecChH
Q 010995          193 HLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDG--CVYEANYVILSASIG  253 (496)
Q Consensus       193 ~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G--~~~~ad~VI~A~p~~  253 (496)
                      .+.+.|.+.+.+      .|++|+++++|++++.+++++. +.+.+|  ..++||.||+|+...
T Consensus       260 rL~~aL~~~l~~------~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf  317 (422)
T PRK05329        260 RLQNALRRAFER------LGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSF  317 (422)
T ss_pred             HHHHHHHHHHHh------CCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence            677788877766      7999999999999998877776 344445  358999999998753

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.61  E-value=1.2e-06  Score=92.20  Aligned_cols=39  Identities=21%  Similarity=0.307  Sum_probs=35.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      ..+||+|||+|+|||+||..++++|. +|+|+|+....||
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~G~-~VilveK~~~~~g   87 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEHGF-NTACITKLFPTRS   87 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhcCC-cEEEEEcCCCCCC
Confidence            35799999999999999999999999 6999999887776

>PRK08275 putative oxidoreductase; Provisional

Probab=98.59  E-value=2.8e-07  Score=96.11  Aligned_cols=39  Identities=23%  Similarity=0.431  Sum_probs=34.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeCCCCCe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAEN--GIEDILILEASDRIGG   44 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~~~~GG   44 (496)
                      ..+||+|||||.|||+||..++++  |. +|+|+|+....+|
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~-~VilveK~~~~~~   48 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERNPAL-RVLLLEKANVKRS   48 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhCCCC-eEEEEeCCCCCCC
Confidence            457999999999999999999987  68 6999999886433

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.59  E-value=6.6e-07  Score=93.76  Aligned_cols=39  Identities=23%  Similarity=0.428  Sum_probs=36.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      ++.||+|||+|+|||+||..++++|. +|+|+|+....||
T Consensus         2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~-~V~lieK~~~~~g   40 (589)
T PRK08641          2 AKGKVIVVGGGLAGLMATIKAAEAGV-HVDLFSLVPVKRS   40 (589)
T ss_pred             CCccEEEECchHHHHHHHHHHHHcCC-cEEEEEccCCCCC
Confidence            46799999999999999999999999 6999999988766

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.58  E-value=3.7e-06  Score=88.13  Aligned_cols=42  Identities=36%  Similarity=0.660  Sum_probs=38.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      ..+||+|||+|.+|++||..++++|. +|+|+|+.+.+||.+.
T Consensus        15 ~~~dvvvvG~G~aG~~aa~~~~~~g~-~v~l~ek~~~~gg~~~   56 (578)
T PRK12843         15 AEFDVIVIGAGAAGMSAALFAAIAGL-KVLLVERTEYVGGTTA   56 (578)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCCCCccc
Confidence            45799999999999999999999999 6999999999999654

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.58  E-value=1.4e-06  Score=91.31  Aligned_cols=39  Identities=31%  Similarity=0.449  Sum_probs=35.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      ..+||+|||||.|||+||..+++.|. +|+|+|+....||
T Consensus        11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~-~V~vleK~~~~~g   49 (591)
T PRK07057         11 RKFDVVIVGAGGSGMRASLQLARAGL-SVAVLSKVFPTRS   49 (591)
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCC-cEEEEeccCCCCC
Confidence            45799999999999999999999999 6999999877666

>PLN02815 L-aspartate oxidase

Probab=98.57  E-value=1.7e-06  Score=90.25  Aligned_cols=38  Identities=21%  Similarity=0.412  Sum_probs=35.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      ..+||+|||+|+|||+||..+++.| + |+|+|+....||
T Consensus        28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~-VvlleK~~~~gg   65 (594)
T PLN02815         28 KYFDFLVIGSGIAGLRYALEVAEYG-T-VAIITKDEPHES   65 (594)
T ss_pred             cccCEEEECccHHHHHHHHHHhhCC-C-EEEEECCCCCCC
Confidence            3579999999999999999999999 5 999999998887

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.56  E-value=2e-06  Score=90.05  Aligned_cols=39  Identities=26%  Similarity=0.380  Sum_probs=34.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC--CCcEEEEeeCCCCCe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENG--IEDILILEASDRIGG   44 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G--~~~V~vlEa~~~~GG   44 (496)
                      ..+||+|||||+|||+||..++++|  . +|+|+|+....||
T Consensus         3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~-~V~lleK~~~~~g   43 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEANPNL-KIALISKVYPMRS   43 (582)
T ss_pred             eeeeEEEECccHHHHHHHHHHHHhCCCC-cEEEEEccCCCCC
Confidence            3689999999999999999999874  7 6999999987777

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.56  E-value=1.7e-06  Score=89.17  Aligned_cols=39  Identities=23%  Similarity=0.511  Sum_probs=34.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR   45 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr   45 (496)
                      ..+||+|||+|+|||+||..+++ |. +|+|+|+.+..||.
T Consensus         2 ~~~DVlVVG~G~AGl~AAl~a~~-g~-~V~lveK~~~~~g~   40 (510)
T PRK08071          2 PSADVIIIGSGIAALTVAKELCH-EY-NVIIITKKTKRNSN   40 (510)
T ss_pred             CccCEEEECccHHHHHHHHHhhc-CC-CEEEEeccCCCCCC
Confidence            36899999999999999999976 88 69999999887773

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.56  E-value=2e-06  Score=90.39  Aligned_cols=37  Identities=27%  Similarity=0.445  Sum_probs=33.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeCCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAEN--GIEDILILEASDRIG   43 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~~~~G   43 (496)
                      .+||+|||||.|||+||..++++  |. +|+|+|+....+
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~-~V~lieK~~~~~   49 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDL-KVLIVEKANIKR   49 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCC-eEEEEECCCcCC
Confidence            57999999999999999999998  99 699999987643

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.56  E-value=7.3e-07  Score=100.40  Aligned_cols=42  Identities=31%  Similarity=0.594  Sum_probs=38.4

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      ...+||+|||+|.|||+||...+++|. +|+|+|+.+..||..
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga-~VivlEK~~~~GG~s  448 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAASCGA-QVILLEKEAKLGGNS  448 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEEccCCCCCch
Confidence            346899999999999999999999999 699999999999854

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.55  E-value=1.4e-06  Score=88.38  Aligned_cols=58  Identities=22%  Similarity=0.369  Sum_probs=40.1

Q ss_pred             cccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCc-e-EEEeCCCcEEEcCEEEEecChHHH
Q 010995          188 ERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNG-V-TVKTEDGCVYEANYVILSASIGVL  255 (496)
Q Consensus       188 ~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v-~V~~~~G~~~~ad~VI~A~p~~~l  255 (496)
                      +.-++.++...+..         .|++++.++ |++|..++++ + .|++.+|++++||.||=|++...+
T Consensus       153 R~~fd~~L~~~A~~---------~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~  212 (454)
T PF04820_consen  153 RAKFDQFLRRHAEE---------RGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL  212 (454)
T ss_dssp             HHHHHHHHHHHHHH---------TT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred             HHHHHHHHHHHHhc---------CCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence            34466666666555         799998875 7777766554 4 488999999999999999987654

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.55  E-value=6e-07  Score=94.18  Aligned_cols=35  Identities=31%  Similarity=0.449  Sum_probs=32.1

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            9 VIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         9 VvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      |+|||||+|||+||..++++|. +|+|+|+...+||
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~-~VilleK~~~~~~   35 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGY-HVKLFSYVDAPRR   35 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCC-CEEEEEecCCCCC
Confidence            7999999999999999999999 6999999986653

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.54  E-value=2.6e-06  Score=89.36  Aligned_cols=38  Identities=24%  Similarity=0.280  Sum_probs=33.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      ..+||+|||||+|||+||..+++. . +|+|+|+....||
T Consensus         4 ~~~DVlVIG~G~AGl~AAl~aa~~-~-~VilleK~~~~~g   41 (583)
T PRK08205          4 HRYDVVIVGAGGAGMRAAIEAGPR-A-RTAVLTKLYPTRS   41 (583)
T ss_pred             eeccEEEECccHHHHHHHHHHHhC-C-CEEEEeCCCCCCC
Confidence            468999999999999999999986 7 6999999876555

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.51  E-value=3.3e-06  Score=87.73  Aligned_cols=40  Identities=30%  Similarity=0.462  Sum_probs=35.5

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR   45 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr   45 (496)
                      ...+||+|||+|+|||+||..+++. . +|+|+|+....||.
T Consensus         6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~-~VilveK~~~~~g~   45 (536)
T PRK09077          6 EHQCDVLIIGSGAAGLSLALRLAEH-R-RVAVLSKGPLSEGS   45 (536)
T ss_pred             cccCCEEEECchHHHHHHHHHHHHC-C-CEEEEeccCCCCCC
Confidence            4568999999999999999999987 7 69999999887773

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.49  E-value=1.1e-06  Score=90.74  Aligned_cols=58  Identities=19%  Similarity=0.121  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeC-CC--cEEEcCEEEEecChH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTE-DG--CVYEANYVILSASIG  253 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~-~G--~~~~ad~VI~A~p~~  253 (496)
                      -..+++.|.+.+.+.     .|++|+.+++|+++..++++|. |... ++  ..+.||.||+|+.-.
T Consensus       135 G~~l~~~L~~~~~~~-----~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~  196 (513)
T PRK07512        135 GAAIMRALIAAVRAT-----PSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGI  196 (513)
T ss_pred             HHHHHHHHHHHHHhC-----CCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCC
Confidence            356777787776542     4899999999999887666554 3332 23  258999999999753

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=98.47  E-value=1.1e-05  Score=87.36  Aligned_cols=33  Identities=15%  Similarity=0.351  Sum_probs=30.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeCCC
Q 010995            8 PVIIIGAGVSGISAGKILAEN--GIEDILILEASDR   41 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~~~   41 (496)
                      +|+|||||++||+||..|+++  |+ +|+|+|+++.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~-~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAH-EVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCC-eEEEEecCCC
Confidence            799999999999999999998  89 7999999764

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.44  E-value=2.8e-06  Score=87.08  Aligned_cols=38  Identities=32%  Similarity=0.395  Sum_probs=33.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR   45 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr   45 (496)
                      +||+|||||.+|+.||..+++.|. +|+|+|+....+|.
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~-~v~Lie~~~~~~g~   38 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGA-KTLLLTLNLDTIGK   38 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCC-CEEEEecccccccC
Confidence            699999999999999999999999 69999997544443

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.43  E-value=2.7e-07  Score=100.93  Aligned_cols=42  Identities=31%  Similarity=0.670  Sum_probs=39.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      ..++|+|||||+|||+||++|+++|+ +|+|+|+.+++||.++
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~~~GG~l~  346 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAFHDLGGVLR  346 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCCCCceEE
Confidence            46899999999999999999999999 7999999999999876

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.41  E-value=3.6e-07  Score=99.19  Aligned_cols=43  Identities=42%  Similarity=0.692  Sum_probs=39.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN   48 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t   48 (496)
                      ..++|+|||||+|||+||++|++.|+ +|+|+|+++.+||.++.
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~-~VTV~Ek~~~lGG~l~~  578 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKEKPGGVVKN  578 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEecccccCceeee
Confidence            35799999999999999999999999 69999999999998864

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.37  E-value=3.7e-07  Score=88.21  Aligned_cols=43  Identities=37%  Similarity=0.683  Sum_probs=40.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEee
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNE   49 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~   49 (496)
                      ..+|+|||||+|||+||..|++.|+ +|.|+|+++.+|||+...
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~-~v~LVEKepsiGGrmak~  166 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGF-KVYLVEKEPSIGGRMAKL  166 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCC-eEEEEecCCcccccHHhh
Confidence            4689999999999999999999999 699999999999997763

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.35  E-value=8.7e-06  Score=80.15  Aligned_cols=56  Identities=18%  Similarity=0.153  Sum_probs=46.3

Q ss_pred             HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCCC--cEEEcCEEEEecChH
Q 010995          192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDG--CVYEANYVILSASIG  253 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G--~~~~ad~VI~A~p~~  253 (496)
                      ..+.++|.+.+++      .|+++..+++|.++..++++++ |.+.++  ..++||+||+|+...
T Consensus       263 ~RL~~aL~~~~~~------~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw  321 (419)
T TIGR03378       263 IRLEEALKHRFEQ------LGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSF  321 (419)
T ss_pred             HHHHHHHHHHHHH------CCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCC
Confidence            4577778887776      7999999999999999888877 666665  479999999998765

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.34  E-value=5.6e-07  Score=91.99  Aligned_cols=42  Identities=29%  Similarity=0.487  Sum_probs=38.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN   48 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t   48 (496)
                      ++||+|||||++|++||..++++|. +|+|+|+++.+||.|-.
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~-~V~liE~~~~~GG~c~~   44 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGL-KVACVEGRSTLGGTCLN   44 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCceeeeecc
Confidence            5899999999999999999999999 69999998899998743

>PRK12831 putative oxidoreductase; Provisional

Probab=98.33  E-value=7.4e-07  Score=90.75  Aligned_cols=43  Identities=33%  Similarity=0.512  Sum_probs=39.8

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      ...+||+|||||++||+||++|++.|+ +|+|+|+.+.+||.+.
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~-~V~v~e~~~~~GG~l~  180 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKMGY-DVTIFEALHEPGGVLV  180 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCCCCCeee
Confidence            356899999999999999999999999 6999999999999875

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.33  E-value=8e-07  Score=89.91  Aligned_cols=43  Identities=26%  Similarity=0.363  Sum_probs=39.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHH--CCCCcEEEEeeCCCCCeEEEe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAE--NGIEDILILEASDRIGGRVRN   48 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~--~G~~~V~vlEa~~~~GGr~~t   48 (496)
                      ..++|+|||||+|||+||+.|++  .|+ +|+|+|+.+.+||.++.
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p~pgGlvr~   69 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLPTPFGLVRS   69 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCCCCcceEee
Confidence            45789999999999999999997  799 69999999999998874

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.32  E-value=6.7e-07  Score=91.62  Aligned_cols=41  Identities=29%  Similarity=0.519  Sum_probs=38.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN   48 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t   48 (496)
                      .+||+|||||++|++||+.|+++|. +|+|+|+ +.+||.|..
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~-~v~lie~-~~~GG~~~~   41 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGL-KVALVEK-EYLGGTCLN   41 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCC-eEEEEec-CCCCCceee
Confidence            4899999999999999999999999 6999999 899998764

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.31  E-value=7.4e-07  Score=96.34  Aligned_cols=43  Identities=40%  Similarity=0.674  Sum_probs=39.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN   48 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t   48 (496)
                      ..++|+|||||.|||+||++|+++|+ +|+|+|+.+.+||.++.
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~~~~GG~lr~  580 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFEREENAGGVVKN  580 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEecccccCcceee
Confidence            46799999999999999999999999 79999999999998764

>PRK14694 putative mercuric reductase; Provisional

Probab=98.30  E-value=8.1e-07  Score=90.97  Aligned_cols=46  Identities=30%  Similarity=0.473  Sum_probs=41.4

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN   48 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t   48 (496)
                      |.+...+||+|||||++|++||..|++.|. +|+|+|+. .+||.|..
T Consensus         1 ~~~~~~~dviVIGaG~aG~~aA~~l~~~g~-~v~lie~~-~~GGtc~n   46 (468)
T PRK14694          1 MMSDNNLHIAVIGSGGSAMAAALKATERGA-RVTLIERG-TIGGTCVN   46 (468)
T ss_pred             CCCCCcCCEEEECCCHHHHHHHHHHHhCCC-cEEEEEcc-ccccceec
Confidence            666789999999999999999999999999 69999985 78997763

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=98.30  E-value=3.5e-06  Score=77.16  Aligned_cols=56  Identities=14%  Similarity=0.277  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCc-----eEEEeCCCcEEEcCEEEEecCh
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNG-----VTVKTEDGCVYEANYVILSASI  252 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~-----v~V~~~~G~~~~ad~VI~A~p~  252 (496)
                      +..+...+.+.+.+      .|+++.+|-+|+.|..+++.     ++|....+++++...||-++..
T Consensus       195 ~~~v~ls~~edF~~------~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl  255 (453)
T KOG2665|consen  195 WGSVTLSFGEDFDF------MGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGL  255 (453)
T ss_pred             hHHHHHHHHHHHHH------hcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccc
Confidence            56677788888777      79999999999999987653     4555555688999999988765

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.29  E-value=1e-05  Score=82.77  Aligned_cols=40  Identities=30%  Similarity=0.580  Sum_probs=35.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      ++||+|||||.+|+.||..|+++|. +|+|+|++ .+||.|-
T Consensus         1 ~~~vvviG~G~~G~~~a~~~~~~g~-~v~~~e~~-~~gG~c~   40 (466)
T PRK07845          1 MTRIVIIGGGPGGYEAALVAAQLGA-DVTVIERD-GLGGAAV   40 (466)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEEcc-CCCCccc
Confidence            4689999999999999999999999 69999986 4788765

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.29  E-value=9.3e-07  Score=89.83  Aligned_cols=43  Identities=30%  Similarity=0.453  Sum_probs=38.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC-CCeEEEe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR-IGGRVRN   48 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~-~GGr~~t   48 (496)
                      +.+||+|||||.+|++||..|++.|. +|+|+|+++. +||.|-.
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~g~-~V~liE~~~~~~GG~c~~   45 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASAGK-KVALVEESKAMYGGTCIN   45 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCC-EEEEEecCCcccceeeec
Confidence            36899999999999999999999999 6999999874 6997643

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.28  E-value=1.2e-06  Score=87.24  Aligned_cols=45  Identities=29%  Similarity=0.269  Sum_probs=39.3

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHH-HCCCCcEEEEeeCCCCCeEEEee
Q 010995            4 TSRSPVIIIGAGVSGISAGKILA-ENGIEDILILEASDRIGGRVRNE   49 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~-~~G~~~V~vlEa~~~~GGr~~t~   49 (496)
                      ...++|+|||||+|||+||.+|. +.|+ +|+|+|+.+.+||.++..
T Consensus        37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p~pgGLvR~G   82 (506)
T PTZ00188         37 AKPFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLPNPYGLIRYG   82 (506)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCCCCccEEEEe
Confidence            34678999999999999999765 6799 699999999999998853

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.28  E-value=1e-06  Score=89.59  Aligned_cols=43  Identities=30%  Similarity=0.505  Sum_probs=38.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC-CCCeEEEe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD-RIGGRVRN   48 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~-~~GGr~~t   48 (496)
                      +.+||+|||||.+|++||..|+++|. +|+|+|+.+ .+||.+..
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~g~-~V~lie~~~~~~GG~~~~   45 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKAGW-RVALIEQSNAMYGGTCIN   45 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHCCC-eEEEEcCCCCccceeEee
Confidence            46899999999999999999999999 699999986 48998864

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.27  E-value=8.9e-07  Score=90.06  Aligned_cols=41  Identities=32%  Similarity=0.595  Sum_probs=37.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN   48 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t   48 (496)
                      .+||+|||||++|++||..+++.|. +|+|+|+ +.+||.|..
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~-~V~lie~-~~~GG~c~~   42 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGA-KVAIAEE-PRVGGTCVI   42 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-cEEEEec-CccCceeec
Confidence            5899999999999999999999999 6999998 589997763

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK10262 thioredoxin reductase; Provisional

Probab=98.27  E-value=1.1e-06  Score=85.43  Aligned_cols=45  Identities=24%  Similarity=0.500  Sum_probs=39.3

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      |...+.+||+|||||+|||+||..|+++|+ +|+|+|+. ..||.+.
T Consensus         1 ~~~~~~~~vvIIGgGpaGl~aA~~l~~~g~-~~~~ie~~-~~gg~~~   45 (321)
T PRK10262          1 MGTTKHSKLLILGSGPAGYTAAVYAARANL-QPVLITGM-EKGGQLT   45 (321)
T ss_pred             CCCCCcCCEEEECCCHHHHHHHHHHHHCCC-CeEEEEee-cCCCcee
Confidence            666788999999999999999999999999 69999964 6787554

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.25  E-value=9.9e-07  Score=89.68  Aligned_cols=41  Identities=32%  Similarity=0.621  Sum_probs=37.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      +.+||+|||||++|++||..|++.|. +|+|+|+. .+||.|-
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~G~-~V~liE~~-~~GG~c~   41 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEHGA-KALLVEAK-KLGGTCV   41 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC-cEEEeccc-cccccee
Confidence            36899999999999999999999999 69999984 6899765

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.22  E-value=1.7e-06  Score=90.17  Aligned_cols=42  Identities=36%  Similarity=0.596  Sum_probs=38.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN   48 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t   48 (496)
                      ..+||+|||||+|||+||..|+++|+ +|+|+|+. .+||.+..
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar~g~-~V~liE~~-~~GG~~~~   44 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGRAKL-DTLIIEKD-DFGGQITI   44 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC-CCCceEEe
Confidence            46999999999999999999999999 69999995 78998764

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.22  E-value=1.4e-06  Score=89.05  Aligned_cols=42  Identities=29%  Similarity=0.500  Sum_probs=38.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      .++||+|||||.+|++||..|++.|. +|+|+|+.+.+||.|.
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~~G~-~V~lie~~~~~GG~c~   44 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAADLGL-ETVCVERYSTLGGVCL   44 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCccccccc
Confidence            36999999999999999999999999 6999999888999764

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.22  E-value=1.3e-06  Score=89.34  Aligned_cols=42  Identities=36%  Similarity=0.523  Sum_probs=38.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN   48 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t   48 (496)
                      ..+||+|||||++|++||..|+++|+ +|+|+|+.. +||.|..
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~-~V~liE~~~-~GG~c~~   44 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGL-KVAIVEKEK-LGGTCLN   44 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCC-cEEEEeccc-cccceee
Confidence            46899999999999999999999999 699999977 9997754

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.22  E-value=1.2e-05  Score=84.15  Aligned_cols=33  Identities=24%  Similarity=0.556  Sum_probs=30.7

Q ss_pred             CEEEECCCHHHHHHHHHHH----HCCCCcEEEEeeCCC
Q 010995            8 PVIIIGAGVSGISAGKILA----ENGIEDILILEASDR   41 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~----~~G~~~V~vlEa~~~   41 (496)
                      ||+|||||+|||+||..++    ++|. +|+|+|+...
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~-~VilieK~~~   37 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGL-KIVLVEKANL   37 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCC-eEEEEEccCC
Confidence            8999999999999999998    7899 6999999875

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.21  E-value=1.5e-06  Score=89.04  Aligned_cols=41  Identities=32%  Similarity=0.535  Sum_probs=37.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      .++||+|||||++|++||..|++.|. +|+|+|+ +.+||.+.
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~-~v~lie~-~~~GG~~~   42 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGK-KVALIEK-GPLGGTCL   42 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCC-eEEEEeC-Ccccccee
Confidence            46999999999999999999999999 6999999 78899765

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.20  E-value=1.6e-06  Score=95.91  Aligned_cols=42  Identities=31%  Similarity=0.549  Sum_probs=39.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      ..++|+|||||+|||+||+.|+++|+ +|+|+|+.+.+||.++
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~-~VtV~E~~~~~GG~l~  470 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGV-DVTVYEALHVVGGVLQ  470 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCCcceee
Confidence            45799999999999999999999999 6999999999999776

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.20  E-value=1.7e-06  Score=92.10  Aligned_cols=42  Identities=36%  Similarity=0.673  Sum_probs=39.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      ..++|+|||||+|||+||+.|++.|+ +|+|+|+.+.+||.+.
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~~~GG~l~  367 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHPEIGGLLT  367 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceee
Confidence            46799999999999999999999999 6999999999999775

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.20  E-value=1.7e-06  Score=88.81  Aligned_cols=42  Identities=24%  Similarity=0.463  Sum_probs=38.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN   48 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t   48 (496)
                      ..+||+|||||.+|++||..|++.|. +|+|+|+. .+||.|..
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~-~v~lie~~-~~GG~c~~   44 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGL-KTALVEKG-KLGGTCLH   44 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-eEEEEEcc-CCCcceEc
Confidence            47999999999999999999999999 69999985 88998864

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=9.8e-06  Score=75.97  Aligned_cols=230  Identities=18%  Similarity=0.281  Sum_probs=126.4

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeC--------------------CcEEeecc
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFG--------------------GVSVELGA   60 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~--------------------g~~~d~G~   60 (496)
                      |.....+||+|+|-|+.-...+..|+-+|. +|+.+++++..|+-.+|.+..                    .+.+|+-+
T Consensus         1 Md~~~~yDvii~GTgl~esils~~Ls~~~k-~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~P   79 (434)
T COG5044           1 MDEETLYDVIILGTGLRESILSAALSWDGK-NVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIP   79 (434)
T ss_pred             CCccccccEEEecccHHHHHHHHHhhhcCc-eEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhch
Confidence            777678999999999999999999999999 799999999999988885421                    13445555


Q ss_pred             eEEecCCCCCCChHHHHHHhcCCccccccCCCc-ceEEEcCCCccc--ChhHHHH-------HH-HHHHHHHHHHhcccc
Q 010995           61 GWIAGVGGKESNPVWELASKSGLRTCFSDYTNA-RYNIYDRSGKII--PSGVAAD-------SY-KKAVESAIANLKNLE  129 (496)
Q Consensus        61 ~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~-~~~~~~~~g~~~--~~~~~~~-------~~-~~~~~~~~~~~~~~~  129 (496)
                      ..+.     ....+..++.+.|+..... +... .+.+| .+|+..  |....+-       ++ ++.+.++.+...+..
T Consensus        80 K~l~-----A~s~l~~iLi~t~v~~YLe-fk~i~~~~~~-~~~k~~kVP~ne~ei~~s~~lsL~eKr~vmrFl~~V~n~~  152 (434)
T COG5044          80 KFLF-----ANSELLKILIETGVTEYLE-FKQISGSFLY-RPGKIYKVPYNEAEIFTSPLLSLFEKRRVMRFLKWVSNYA  152 (434)
T ss_pred             hhhc-----ccchHHHHHHHhChHhhee-eeeccccEEe-cCCcEEECCccHHhhhcCCCcchhhHHHHHHHHHHHHhHH
Confidence            5544     3556777777888876652 2221 23233 444543  3221110       11 111222221111111


Q ss_pred             ccc-------h---hHHHHHHhhhcCCCCCCChHHHHHHHHHh--hcccccc-------CCcccccccCCcceeeeCccc
Q 010995          130 ATN-------S---NIGEVIKAATELPSSPKTPLELAIDFILH--DFEMAEV-------EPISTYVDFGEREFLVADERG  190 (496)
Q Consensus       130 ~~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-------~~~~~~~~~~~~~~~~~~~~G  190 (496)
                      +..       .   ..+..++.+    .......+...-.+..  ++.....       .-+.++..+|..++++ ++-|
T Consensus       153 ~~~~~~~~~~e~k~~~~~~~ekf----~L~~~~~e~i~~~i~l~ldl~~p~re~~erIl~Y~~Sf~~yg~~pyLy-p~YG  227 (434)
T COG5044         153 EQKSTLQELYESKDTMEFLFEKF----GLSGATEEFIGHGIALSLDLDIPAREALERILRYMRSFGDYGKSPYLY-PRYG  227 (434)
T ss_pred             hhhhhchhhhhcccHHHHHHHHH----ccCcchhhhhhhhhhhhccccCCchHHHHHHHHHHHhhcccCCCccee-eccC
Confidence            110       0   112222210    0000000000000000  0000000       0012344566666664 4567


Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEec
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSA  250 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~  250 (496)
                      .+.|.+.+++.---      -|++..+|+++.+|....+..+|... +.+..|..||...
T Consensus       228 l~El~QGFaRssav------~GgtymLn~~i~ein~tk~v~~v~~~-~~~~ka~KiI~~~  280 (434)
T COG5044         228 LGELSQGFARSSAV------YGGTYMLNQAIDEINETKDVETVDKG-SLTQKAGKIISSP  280 (434)
T ss_pred             chhhhHHHHHhhhc------cCceeecCcchhhhccccceeeeecC-cceeecCcccCCc
Confidence            99999999887443      69999999999999887762234432 3477888888743

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.18  E-value=2.3e-06  Score=86.99  Aligned_cols=42  Identities=33%  Similarity=0.580  Sum_probs=38.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      ..++|+|||||++||+||+.|++.|+ +|+|+|+.+.+||.+.
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~~~~GG~l~  173 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGH-SVTVFEALHKPGGVVT  173 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCCCcEee
Confidence            45799999999999999999999999 6999999999999764

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK14727 putative mercuric reductase; Provisional

Probab=98.18  E-value=2.4e-06  Score=87.72  Aligned_cols=44  Identities=36%  Similarity=0.511  Sum_probs=40.5

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN   48 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t   48 (496)
                      +.++||+|||||.+|++||..|++.|. +|+|+|+.+.+||.|..
T Consensus        14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~-~v~~ie~~~~~GG~c~n   57 (479)
T PRK14727         14 KLQLHVAIIGSGSAAFAAAIKAAEHGA-RVTIIEGADVIGGCCVN   57 (479)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEEccCcceeEecc
Confidence            456899999999999999999999999 69999999899998864

>PRK06370 mercuric reductase; Validated

Probab=98.17  E-value=2.2e-06  Score=87.76  Aligned_cols=41  Identities=29%  Similarity=0.481  Sum_probs=36.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      .++||+|||||++|++||..|++.|+ +|+|+|+. .+||.|.
T Consensus         4 ~~~DvvVIG~GpaG~~aA~~aa~~G~-~v~lie~~-~~GG~c~   44 (463)
T PRK06370          4 QRYDAIVIGAGQAGPPLAARAAGLGM-KVALIERG-LLGGTCV   44 (463)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-eEEEEecC-ccCCcee
Confidence            46999999999999999999999999 69999985 6777665

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.16  E-value=3e-06  Score=86.78  Aligned_cols=42  Identities=36%  Similarity=0.696  Sum_probs=38.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      ..++|+|||||++||+||+.|++.|+ +|+|+|+.+.+||.+.
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~-~V~vie~~~~~GG~l~  183 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGH-KVTVFERADRIGGLLR  183 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEecCCCCCceee
Confidence            45799999999999999999999999 6999999999999765

>TIGR01810 betA choline dehydrogenase

Probab=98.14  E-value=7e-05  Score=78.07  Aligned_cols=33  Identities=36%  Similarity=0.500  Sum_probs=30.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC-CCcEEEEeeCCC
Q 010995            8 PVIIIGAGVSGISAGKILAENG-IEDILILEASDR   41 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G-~~~V~vlEa~~~   41 (496)
                      |+||||||.+|+.+|.+|+++| + +|+|||+...
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~-~VlvlEaG~~   34 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSN-SVLVLEAGGS   34 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCC-eEEEEecCCC
Confidence            8999999999999999999998 7 6999999863

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.14  E-value=3.1e-06  Score=91.67  Aligned_cols=42  Identities=36%  Similarity=0.615  Sum_probs=39.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      ..++|+|||||+|||+||+.|+++|+ +|+|+|+.+.+||.+.
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~-~V~v~e~~~~~GG~l~  471 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGY-DVTVFEALHEIGGVLK  471 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeee
Confidence            46799999999999999999999999 6999999999999865

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.13  E-value=3e-06  Score=86.74  Aligned_cols=42  Identities=29%  Similarity=0.436  Sum_probs=37.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN   48 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t   48 (496)
                      +++||+|||||++|++||..|++.|. +|+|+|++ .+||.|..
T Consensus         3 ~~~DvvIIG~GpaG~~AA~~aa~~G~-~V~lie~~-~~GG~c~~   44 (466)
T PRK07818          3 THYDVVVLGAGPGGYVAAIRAAQLGL-KTAVVEKK-YWGGVCLN   44 (466)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCC-eEEEEecC-CCCCceec
Confidence            36899999999999999999999999 69999984 78887764

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.13  E-value=0.00012  Score=71.66  Aligned_cols=36  Identities=31%  Similarity=0.594  Sum_probs=32.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC--CCcEEEEeeCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENG--IEDILILEASDR   41 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G--~~~V~vlEa~~~   41 (496)
                      .+++|||||||.+||.+|..|.++-  + +|+|+|++++
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~-~itLVd~~~~   39 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARKLPDV-EITLVDRRDY   39 (405)
T ss_pred             CCceEEEECCcHHHHHHHHHhhhcCCCC-cEEEEeCCCc
Confidence            4678999999999999999999974  8 7999999875

>PTZ00058 glutathione reductase; Provisional

Probab=98.13  E-value=2.9e-06  Score=87.83  Aligned_cols=43  Identities=28%  Similarity=0.491  Sum_probs=38.5

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN   48 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t   48 (496)
                      ...+||+|||||.+|++||..+++.|. +|+|+|+. .+||.|-.
T Consensus        46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~-~ValIEk~-~~GGtCln   88 (561)
T PTZ00058         46 RMVYDLIVIGGGSGGMAAARRAARNKA-KVALVEKD-YLGGTCVN   88 (561)
T ss_pred             CccccEEEECcCHHHHHHHHHHHHcCC-eEEEEecc-cccccccc
Confidence            357899999999999999999999999 69999985 79997754

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=98.12  E-value=3.1e-06  Score=84.83  Aligned_cols=43  Identities=30%  Similarity=0.472  Sum_probs=40.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN   48 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t   48 (496)
                      ...+|+|||||++||+||+.|+++|+ +|+|+|+.+.+||++..
T Consensus       122 tg~~VaviGaGPAGl~~a~~L~~~G~-~Vtv~e~~~~~GGll~y  164 (457)
T COG0493         122 TGKKVAVIGAGPAGLAAADDLSRAGH-DVTVFERVALDGGLLLY  164 (457)
T ss_pred             CCCEEEEECCCchHhhhHHHHHhCCC-eEEEeCCcCCCceeEEe
Confidence            35789999999999999999999999 79999999999999884

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.12  E-value=3.9e-06  Score=89.15  Aligned_cols=42  Identities=40%  Similarity=0.677  Sum_probs=39.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      ..++|+|||||++||+||+.|++.|+ +|+|+|+++++||.++
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~~~~GG~l~  233 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDANEQAGGMMR  233 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCceee
Confidence            45799999999999999999999999 6999999999999875

>TIGR02053 MerA mercuric reductase

Probab=98.10  E-value=3.2e-06  Score=86.58  Aligned_cols=39  Identities=28%  Similarity=0.496  Sum_probs=35.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      +||+|||||++|++||..|++.|. +|+|+|+.. +||.|-
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~-~v~lie~~~-~GG~c~   39 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGA-SVAMVERGP-LGGTCV   39 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCc-ccCCee
Confidence            699999999999999999999999 699999865 787764

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK13748 putative mercuric reductase; Provisional

Probab=98.09  E-value=3.7e-06  Score=88.38  Aligned_cols=42  Identities=29%  Similarity=0.465  Sum_probs=38.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN   48 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t   48 (496)
                      ..+||+|||||.+|++||..|+++|. +|+|+|++ .+||.|..
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~-~v~lie~~-~~GG~c~n  138 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGA-RVTLIERG-TIGGTCVN  138 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCC-eEEEEecC-cceeeccc
Confidence            36899999999999999999999999 69999987 89998753

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.09  E-value=4.2e-06  Score=82.23  Aligned_cols=37  Identities=32%  Similarity=0.465  Sum_probs=33.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIG   43 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~G   43 (496)
                      +.||+|||||++|+.||+.|++.|+ +|+|+|+++...
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr~Gl-~V~LiE~rp~~~   38 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAKRGV-PVELYEMRPVKK   38 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEEccCccC
Confidence            5699999999999999999999999 699999987653

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.08  E-value=4.4e-06  Score=88.67  Aligned_cols=42  Identities=31%  Similarity=0.628  Sum_probs=39.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      ..++|+|||||++||+||+.|++.|+ +|+|+|+.+.+||.+.
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~~GG~l~  350 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEIGGMLT  350 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCCCCCeee
Confidence            46899999999999999999999999 6999999999999875

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.08  E-value=6.9e-05  Score=82.67  Aligned_cols=36  Identities=33%  Similarity=0.561  Sum_probs=33.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..+||+|||||.|||+||..+++.|. +|+|+|+...
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~-~V~lleK~~~   47 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGA-NVLLLEKAHV   47 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCC-eEEEEecccc
Confidence            35799999999999999999999999 6999999874

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.07  E-value=5e-06  Score=84.90  Aligned_cols=42  Identities=43%  Similarity=0.734  Sum_probs=38.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      ..++|+|||||++||+||+.|++.|+ +|+|+|+.+.+||.+.
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~-~V~lie~~~~~gG~l~  180 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEARDKAGGLLR  180 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCCCCcEee
Confidence            45799999999999999999999999 7999999999999764

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.07  E-value=5.2e-06  Score=84.71  Aligned_cols=42  Identities=31%  Similarity=0.680  Sum_probs=39.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      ..++|+|||||++||+||+.|++.|+ +|+|+|+.+.+||.++
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~~~gG~l~  181 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHPEIGGLLT  181 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCceee
Confidence            45789999999999999999999999 6999999999999775

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.06  E-value=4.3e-06  Score=89.47  Aligned_cols=41  Identities=15%  Similarity=0.233  Sum_probs=36.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR   45 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr   45 (496)
                      ...++|+|||||+|||+||++|++.|+ +|+|+|+.+..|+-
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh-~Vtv~E~~~i~gl~  421 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGH-NVTAIDGLKITLLP  421 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCC-eEEEEccccccccc
Confidence            356799999999999999999999999 69999998765553

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=98.05  E-value=0.0034  Score=61.31  Aligned_cols=58  Identities=21%  Similarity=0.188  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCCCcEEEcCEEEEecChHHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDGCVYEANYVILSASIGVL  255 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~A~p~~~l  255 (496)
                      ...++..|++.+.+      .|++++.+++|++|..+++++. |.+.+| ++.||.||+|+.+..-
T Consensus       136 p~~l~~~l~~~~~~------~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~  194 (337)
T TIGR02352       136 PRALLKALEKALEK------LGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAG  194 (337)
T ss_pred             hHHHHHHHHHHHHH------cCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhh
Confidence            56788888888777      7999999999999998888765 788777 8999999999998654

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.05  E-value=3.7e-05  Score=78.37  Aligned_cols=43  Identities=14%  Similarity=0.264  Sum_probs=34.7

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeC-CCcEEE--cCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTE-DGCVYE--ANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~-~G~~~~--ad~VI~A~p~~  253 (496)
                      .|++++++++|++|+.+++.+.+... +|++++  +|++|+|++..
T Consensus        69 ~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~  114 (444)
T PRK09564         69 SGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGAR  114 (444)
T ss_pred             CCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCC
Confidence            57889999999999988887777642 355666  99999999864

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=2e-05  Score=74.79  Aligned_cols=223  Identities=19%  Similarity=0.313  Sum_probs=121.5

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeC---------------------CcEEeec
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFG---------------------GVSVELG   59 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~---------------------g~~~d~G   59 (496)
                      |++  .+||+|+|-|+.-...+-.|+..|. +|+.+++++..||-.+|.+..                     .+.+|+-
T Consensus         1 mde--eyDvivlGTgl~ecilS~~Ls~~gk-kVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLi   77 (440)
T KOG1439|consen    1 MDE--EYDVIVLGTGLTECILSGALSVDGK-KVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLI   77 (440)
T ss_pred             CCC--ceeEEEEcCCchhheeeeeeeecCc-EEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhc
Confidence            544  4999999999999999999999999 699999999999988885421                     1334554


Q ss_pred             ceEEecCCCCCCChHHHHHHhcCCccccccCCCcceEEEcCCCcc--cChhHHHH-------HHH-HHHHHHHHHhcc--
Q 010995           60 AGWIAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKI--IPSGVAAD-------SYK-KAVESAIANLKN--  127 (496)
Q Consensus        60 ~~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~-------~~~-~~~~~~~~~~~~--  127 (496)
                      +.++.     ....+..++-+.|+..... +.......+...|+.  +|....+.       ++. +.+..+.....+  
T Consensus        78 PK~lm-----An~~Lvk~Li~T~V~~YL~-fk~i~gsfv~~~~k~~KVP~t~~Ea~~s~lmgl~eKrr~~kFl~~V~n~~  151 (440)
T KOG1439|consen   78 PKFLM-----ANGELVKILIHTGVTRYLE-FKSISGSFVYKKGKIYKVPATEAEALTSPLMGLFEKRRVMKFLKFVLNYD  151 (440)
T ss_pred             hHhhh-----ccchHHHHHHHhchhhheE-EEeecceEEEECCeEEECCCCHHHHhcCCccchhHHHHHHHHHHHHhhhh
Confidence            55444     3455677777778776652 222212233345555  33222111       111 111111111111  


Q ss_pred             ------cccc---chhHHHHHHhhh------cCCC------CCC----ChHHHHHHHHHhhccccccCCcccccccCCcc
Q 010995          128 ------LEAT---NSNIGEVIKAAT------ELPS------SPK----TPLELAIDFILHDFEMAEVEPISTYVDFGERE  182 (496)
Q Consensus       128 ------~~~~---~~~~~~~~~~~~------~~~~------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (496)
                            +...   ...++++++.+.      .+.+      ...    .+....++-+..        -..++..++...
T Consensus       152 e~~~~~~~~~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd~~ld~p~~~~~~ri~~--------Y~~S~~~yg~~~  223 (440)
T KOG1439|consen  152 EEDPKTWQGYDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDDSYLDQPAKETLERILL--------YVRSFARYGKSP  223 (440)
T ss_pred             hhccccccccccccchHHHHHHHhcccccceeeeeeeeEEEecchhccCccHHHHHHHHH--------HHHHHhhcCCCc
Confidence                  1111   113444444311      0000      000    000000000000        011233466655


Q ss_pred             eeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE--EEeCCCcEEEcCEEEE
Q 010995          183 FLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT--VKTEDGCVYEANYVIL  248 (496)
Q Consensus       183 ~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~--V~~~~G~~~~ad~VI~  248 (496)
                       +.++..|...|++.+++.---      -|++..+|+++.+|....++..  |... ++...++.||+
T Consensus       224 -ylyP~yGlgEL~QgFaRlsAv------yGgTYMLn~pi~ei~~~~~gk~igvk~~-~~v~~~k~vi~  283 (440)
T KOG1439|consen  224 -YLYPLYGLGELPQGFARLSAV------YGGTYMLNKPIDEINETKNGKVIGVKSG-GEVAKCKKVIC  283 (440)
T ss_pred             -ceecccCcchhhHHHHHHhhc------cCceeecCCceeeeeccCCccEEEEecC-CceeecceEEe
Confidence             346678999999999876332      6999999999999998544433  4433 34556666665

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.03  E-value=5.1e-06  Score=85.23  Aligned_cols=42  Identities=31%  Similarity=0.485  Sum_probs=36.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEee------CCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEA------SDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa------~~~~GGr~~   47 (496)
                      ..+||+|||||++|++||..|++.|. +|+|+|+      ...+||.|.
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~g~-~v~lie~~~~~~g~~~~Gg~c~   50 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQLGL-KVACIEAWKNPKGKPALGGTCL   50 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhCCC-eEEEEecccCCCCCCCcCCccc
Confidence            47899999999999999999999999 6999998      356777664

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=98.03  E-value=7.2e-05  Score=70.64  Aligned_cols=43  Identities=28%  Similarity=0.439  Sum_probs=40.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN   48 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t   48 (496)
                      ..+||+|||+|+.|-.||...++.|. +-..+|++..+||.|-.
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGl-kTacvEkr~~LGGTcLn   80 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGL-KTACVEKRGTLGGTCLN   80 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcc-eeEEEeccCccCceeee
Confidence            46999999999999999999999999 69999999999997764

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.03  E-value=5.9e-06  Score=85.10  Aligned_cols=42  Identities=26%  Similarity=0.518  Sum_probs=36.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC--------CCCeEEEe
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD--------RIGGRVRN   48 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~--------~~GGr~~t   48 (496)
                      ++||+|||||.+|++||..|+++|. +|+|+|+..        ++||.|-.
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~-~V~lie~~~~~~~~~~~~~GG~C~n   54 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGK-KVALFDYVKPSTQGTKWGLGGTCVN   54 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-eEEEEeccCCCCccccccccceecc
Confidence            6899999999999999999999999 699999631        48888743

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.00  E-value=7e-06  Score=91.24  Aligned_cols=42  Identities=24%  Similarity=0.559  Sum_probs=39.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN   48 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t   48 (496)
                      .+||+|||||+|||+||..|++.|+ +|+|+|+.+++||.+..
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~-~V~liD~~~~~GG~~~~  204 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGA-RVILVDEQPEAGGSLLS  204 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCCCCCeeec
Confidence            5799999999999999999999999 69999999999998864

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PLN02507 glutathione reductase

Probab=97.99  E-value=7.8e-06  Score=84.12  Aligned_cols=42  Identities=29%  Similarity=0.428  Sum_probs=37.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEee---------CCCCCeEEEe
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEA---------SDRIGGRVRN   48 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa---------~~~~GGr~~t   48 (496)
                      ++||+|||||.+|++||..+++.|. +|+|+|+         .+.+||.|-.
T Consensus        25 ~yDvvVIG~GpaG~~aA~~a~~~G~-~V~liE~~~~~~~~~~~~~~GGtc~n   75 (499)
T PLN02507         25 DFDLFVIGAGSGGVRAARFSANFGA-KVGICELPFHPISSESIGGVGGTCVI   75 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCcccccccCCCccceeec
Confidence            4899999999999999999999999 6999996         3678888754

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.98  E-value=7.6e-06  Score=86.28  Aligned_cols=42  Identities=36%  Similarity=0.624  Sum_probs=39.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      ..++|+|||+|+|||+||-.|.+.|+ .|+|+|+++|+||.+.
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk~gh-~v~vyer~dr~ggll~ 1825 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGH-TVTVYERSDRVGGLLM 1825 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhhcCc-EEEEEEecCCcCceee
Confidence            45789999999999999999999999 6999999999999876

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.98  E-value=9.8e-06  Score=83.08  Aligned_cols=41  Identities=29%  Similarity=0.575  Sum_probs=38.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      .++|+|||||++||+||..|+++|+ +|+|+|+.+++||.+.
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~g~-~V~v~e~~~~~gG~l~  183 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRAGH-TVTVFEREDRCGGLLM  183 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCC-eEEEEecCCCCCceee
Confidence            4799999999999999999999999 6999999999999775

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.97  E-value=8.4e-06  Score=80.64  Aligned_cols=37  Identities=30%  Similarity=0.513  Sum_probs=33.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      .||+|||||++|+.||+.|++.|+ +|+|+|+++..|-
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~-~V~LiE~rp~~~~   37 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGV-PVILYEMRPEKLT   37 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-cEEEEeccccccC
Confidence            479999999999999999999999 6999999877654

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.96  E-value=1.2e-05  Score=80.66  Aligned_cols=43  Identities=33%  Similarity=0.583  Sum_probs=39.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN   48 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t   48 (496)
                      ..+|++|||||.+|.+||..+++.|.+ |.|+|+...+||.|-.
T Consensus         3 ~~yDvvVIG~GpaG~~aA~raa~~G~k-valvE~~~~lGGtCln   45 (454)
T COG1249           3 KEYDVVVIGAGPAGYVAAIRAAQLGLK-VALVEKGERLGGTCLN   45 (454)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCC-EEEEeecCCcCceEEe
Confidence            579999999999999999999999995 9999999899997764

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=97.94  E-value=0.00021  Score=70.33  Aligned_cols=61  Identities=16%  Similarity=0.247  Sum_probs=43.8

Q ss_pred             HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCC-ce---EEEeCCC--cEEEcCEEEEecC-hHHHhc
Q 010995          192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRN-GV---TVKTEDG--CVYEANYVILSAS-IGVLQS  257 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~-~v---~V~~~~G--~~~~ad~VI~A~p-~~~l~~  257 (496)
                      ..+...|.+.+.++     .+++|+.++.+.++..+++ .+   .+...++  .++.++.||+|+. ...+.+
T Consensus       133 ~~I~~~L~~~v~~~-----p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~  200 (518)
T COG0029         133 KEIMTALLKKVRNR-----PNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLYA  200 (518)
T ss_pred             HHHHHHHHHHHhcC-----CCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCccccc
Confidence            45777777777655     7899999999999988887 44   3333333  4688999999985 455554

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.93  E-value=1.2e-05  Score=82.21  Aligned_cols=43  Identities=26%  Similarity=0.446  Sum_probs=38.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-CCCcEEEEeeC--------CCCCeEEEe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAEN-GIEDILILEAS--------DRIGGRVRN   48 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~-G~~~V~vlEa~--------~~~GGr~~t   48 (496)
                      +.+||+|||||.+|..||..+++. |. +|+|+|+.        +.+||.|-.
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~-~V~lie~~~~~~~~~~~~~GGtCln   53 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKK-RVAVIDVQTHHGPPHYAALGGTCVN   53 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCC-EEEEEecccCccccccCCccCeecC
Confidence            579999999999999999999997 89 69999984        578997764

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.91  E-value=0.0001  Score=73.91  Aligned_cols=42  Identities=21%  Similarity=0.326  Sum_probs=35.7

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .|++++++++|++|+. ++.+.|.+.+|+++.+|.||++++..
T Consensus       199 ~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~  240 (396)
T PRK09754        199 AGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGIS  240 (396)
T ss_pred             CCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCC
Confidence            5899999999999986 55667888888899999999988653

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.90  E-value=1.5e-05  Score=83.48  Aligned_cols=42  Identities=36%  Similarity=0.597  Sum_probs=38.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      ...+|+|||||++||+||+.|++.|+ +|+|+|+.+.+||.++
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~~~GG~l~  177 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGPKLGGMMR  177 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeee
Confidence            45789999999999999999999999 6999999999999764

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.88  E-value=2.7e-05  Score=72.03  Aligned_cols=42  Identities=36%  Similarity=0.667  Sum_probs=36.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC--CCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD--RIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~--~~GGr~~   47 (496)
                      ...||||||||++||.||.+|+++|. +|+|+|...  .+||.+.
T Consensus         4 ~~~dvivvgaglaglvaa~elA~aG~-~V~ildQEgeqnlGGQAf   47 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELADAGK-RVLILDQEGEQNLGGQAF   47 (552)
T ss_pred             ccccEEEECccHHHHHHHHHHHhcCc-eEEEEcccccccccceee
Confidence            46899999999999999999999999 699998864  4676543

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.88  E-value=2.4e-05  Score=58.72  Aligned_cols=34  Identities=41%  Similarity=0.728  Sum_probs=31.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      +|+|||||..|+-+|..|++.|. +|+|+|+++++
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~~   34 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDRL   34 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccchh
Confidence            48999999999999999999999 79999998865

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=97.86  E-value=4.9e-06  Score=71.80  Aligned_cols=67  Identities=30%  Similarity=0.496  Sum_probs=49.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAEN--GIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGL   83 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl   83 (496)
                      ..||+|||||-+||+|||..+++  .. +|.++|++--+||-.+          +|++.|..+.  -..+..-+++|+|+
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdl-kvaIIE~SVaPGGGaW----------LGGQLFSAMv--vRKPAhLFL~Eigv  142 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDL-KVAIIESSVAPGGGAW----------LGGQLFSAMV--VRKPAHLFLQEIGV  142 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCc-eEEEEEeeecCCCccc----------ccchhhhhhh--hcChHHHHHHHhCC
Confidence            46999999999999999999976  45 6999999988888554          4445444321  23344456778887


Q ss_pred             cc
Q 010995           84 RT   85 (496)
Q Consensus        84 ~~   85 (496)
                      ..
T Consensus       143 pY  144 (328)
T KOG2960|consen  143 PY  144 (328)
T ss_pred             Cc
Confidence            53

>PLN02546 glutathione reductase

Probab=97.86  E-value=1.7e-05  Score=82.28  Aligned_cols=42  Identities=24%  Similarity=0.378  Sum_probs=36.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEee---------CCCCCeEEEe
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEA---------SDRIGGRVRN   48 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa---------~~~~GGr~~t   48 (496)
                      .+||+|||||.+|+.||..+++.|. +|+|+|+         ...+||.|-.
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~~G~-~V~liE~~~~~~~~~~~~~~GGtC~n  129 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASNFGA-SAAVCELPFATISSDTLGGVGGTCVL  129 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeccccccccccCCCccCcccC
Confidence            4899999999999999999999999 6999996         2457776653

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.84  E-value=2.8e-05  Score=76.62  Aligned_cols=43  Identities=30%  Similarity=0.427  Sum_probs=39.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN   48 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t   48 (496)
                      ..++|+|||||.+||++|..|++.|+ +|+|+|+.+.+||.+..
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~~gg~~~~   59 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGY-EVHVYDKLPEPGGLMLF   59 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCCCceeee
Confidence            45699999999999999999999999 69999999999997753

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.84  E-value=0.00017  Score=71.87  Aligned_cols=42  Identities=21%  Similarity=0.385  Sum_probs=37.1

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecCh
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASI  252 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~  252 (496)
                      .|++++++++|++|..+++++.|.+.+|+++.+|.||+|++.
T Consensus       196 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~  237 (377)
T PRK04965        196 MGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGL  237 (377)
T ss_pred             CCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCC
Confidence            588999999999999877777788888889999999999864

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.84  E-value=0.00021  Score=70.34  Aligned_cols=41  Identities=32%  Similarity=0.359  Sum_probs=33.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCC--CCcEEEEeeCCCCCeEE
Q 010995            6 RSPVIIIGAGVSGISAGKILAENG--IEDILILEASDRIGGRV   46 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G--~~~V~vlEa~~~~GGr~   46 (496)
                      +++|+|||+|.+|++.|.+|.+.-  -..|.|+|.++..|+-+
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gi   43 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGI   43 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCc
Confidence            478999999999999999998862  11399999999887633

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.83  E-value=1.2e-05  Score=77.26  Aligned_cols=35  Identities=37%  Similarity=0.587  Sum_probs=30.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCC-CCcEEEEeeCCCC
Q 010995            7 SPVIIIGAGVSGISAGKILAENG-IEDILILEASDRI   42 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G-~~~V~vlEa~~~~   42 (496)
                      +|+||||+|.+|..+|.+|+++| . +|+|||+.++.
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~-~VlvlEaG~~~   36 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNK-KVLVLEAGPRY   36 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS--EEEEESSBSC
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCC-cEEEEEccccC
Confidence            69999999999999999999997 6 69999997643

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=97.81  E-value=0.00023  Score=70.97  Aligned_cols=57  Identities=18%  Similarity=0.213  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      ...++..|.+.+.       .|++|+++++|++|+.+++++.|++.+|..+.||+||+|+.+..
T Consensus       134 p~~~~~~l~~~~~-------~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~  190 (381)
T TIGR03197       134 PPQLCRALLAHAG-------IRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQA  190 (381)
T ss_pred             hHHHHHHHHhccC-------CCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence            4678888887765       37899999999999998888889998887799999999998764

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.80  E-value=2.2e-05  Score=70.63  Aligned_cols=32  Identities=47%  Similarity=0.701  Sum_probs=29.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ||+|||||+|||+||..|++.|. +|+|+|+.+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~-~v~ii~~~~   32 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGA-KVLIIEKSP   32 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS-EEEEESSSS
T ss_pred             CEEEEecHHHHHHHHHHHhcCCC-eEEEEeccc
Confidence            69999999999999999999999 799998754

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.80  E-value=2.5e-05  Score=82.18  Aligned_cols=43  Identities=37%  Similarity=0.574  Sum_probs=38.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC-CCCCeEEEe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS-DRIGGRVRN   48 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~-~~~GGr~~t   48 (496)
                      ..+||+|||||.+|..||..+++.|. +|+|+|+. +.+||.|-.
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~~G~-kV~lie~~~~~lGGtCvn  158 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAMERGL-KVIIFTGDDDSIGGTCVN  158 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCCCccccceeE
Confidence            36899999999999999999999999 69999974 478997764

>PRK13984 putative oxidoreductase; Provisional

Probab=97.78  E-value=3.2e-05  Score=81.91  Aligned_cols=42  Identities=33%  Similarity=0.595  Sum_probs=38.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      ..++|+|||||.+||+||+.|+++|+ +|+|+|+.+.+||...
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~~~~gG~~~  323 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESLSKPGGVMR  323 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceEe
Confidence            46789999999999999999999999 7999999999999765

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.77  E-value=0.0003  Score=76.59  Aligned_cols=43  Identities=21%  Similarity=0.373  Sum_probs=35.6

Q ss_pred             cccceeeCceeEEEEEcC--CceEEEeCCCcEEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSR--NGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~--~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .|++|++++.|++|..++  ....|.+.+|+++.+|.||+|++..
T Consensus       200 ~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~r  244 (847)
T PRK14989        200 MGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIR  244 (847)
T ss_pred             CCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcc
Confidence            799999999999998653  2345778889899999999998753

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.77  E-value=2.8e-05  Score=79.66  Aligned_cols=37  Identities=19%  Similarity=0.337  Sum_probs=35.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      +||+|||+|++|+++|+.|+++|+ +|+|+|++...||
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~-~v~~~e~~~~~~~   37 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGL-KVAMVEIGAADSF   37 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCC-eEEEEeccCccCC
Confidence            699999999999999999999999 6999999988876

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1

Probab=97.76  E-value=0.00045  Score=67.51  Aligned_cols=65  Identities=20%  Similarity=0.226  Sum_probs=47.7

Q ss_pred             ceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEE-EEcCCc---eEEEeCC--C-cEEEcCEEEEecChHH
Q 010995          182 EFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVREL-QHSRNG---VTVKTED--G-CVYEANYVILSASIGV  254 (496)
Q Consensus       182 ~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I-~~~~~~---v~V~~~~--G-~~~~ad~VI~A~p~~~  254 (496)
                      ......+||..++++.|.+.         .+.++ +|++|++| ...+++   +.|++.+  + ..-.+|.||+|+|...
T Consensus       118 ~gl~sV~GGN~qI~~~ll~~---------S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~  187 (368)
T PF07156_consen  118 GGLWSVEGGNWQIFEGLLEA---------SGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQ  187 (368)
T ss_pred             CCceEecCCHHHHHHHHHHH---------ccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCccc
Confidence            34456689999999999998         78899 99999999 444433   3454433  2 2345799999999964


Q ss_pred             Hh
Q 010995          255 LQ  256 (496)
Q Consensus       255 l~  256 (496)
                      ..
T Consensus       188 ~~  189 (368)
T PF07156_consen  188 SF  189 (368)
T ss_pred             cc
Confidence            43

8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.72  E-value=0.00038  Score=71.37  Aligned_cols=44  Identities=11%  Similarity=0.166  Sum_probs=37.0

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCC--cEEEcCEEEEecChHH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDG--CVYEANYVILSASIGV  254 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G--~~~~ad~VI~A~p~~~  254 (496)
                      .|++++++++|++|+.+++++.+.+.+|  +++.+|.||+|++...
T Consensus       224 ~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p  269 (461)
T TIGR01350       224 KGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKP  269 (461)
T ss_pred             cCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcc
Confidence            5899999999999998888888777666  4799999999987543

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK02106 choline dehydrogenase; Validated

Probab=97.69  E-value=4.5e-05  Score=79.96  Aligned_cols=36  Identities=36%  Similarity=0.521  Sum_probs=33.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHH-CCCCcEEEEeeCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAE-NGIEDILILEASDR   41 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~-~G~~~V~vlEa~~~   41 (496)
                      ..+|+||||||.+|+.+|..|++ .|+ +|+|||+.+.
T Consensus         4 ~~~D~iIVG~G~aG~vvA~rLae~~g~-~VlvlEaG~~   40 (560)
T PRK02106          4 MEYDYIIIGAGSAGCVLANRLSEDPDV-SVLLLEAGGP   40 (560)
T ss_pred             CcCcEEEECCcHHHHHHHHHHHhCCCC-eEEEecCCCc
Confidence            46899999999999999999999 799 6999999853

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.68  E-value=4.6e-05  Score=78.18  Aligned_cols=41  Identities=32%  Similarity=0.585  Sum_probs=35.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC--------CCCeEEE
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD--------RIGGRVR   47 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~--------~~GGr~~   47 (496)
                      .+||+|||||.+|+.||..+++.|. +|+|+|+..        .+||.|-
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~-~v~lie~~~~~~~~~~~~~GGtc~   50 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGA-KVMLLDFVTPTPLGTRWGIGGTCV   50 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCCCCCCcceecccccc
Confidence            5899999999999999999999999 699999731        4777654

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=97.68  E-value=4.7e-05  Score=71.93  Aligned_cols=34  Identities=35%  Similarity=0.602  Sum_probs=31.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ...||||||||++|-+.|+.|++.|. +|.|+|+.
T Consensus        44 ~~~DvIIVGAGV~GsaLa~~L~kdGR-rVhVIERD   77 (509)
T KOG1298|consen   44 GAADVIIVGAGVAGSALAYALAKDGR-RVHVIERD   77 (509)
T ss_pred             CcccEEEECCcchHHHHHHHHhhCCc-EEEEEecc
Confidence            46899999999999999999999999 69999985

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.68  E-value=0.00043  Score=70.98  Aligned_cols=44  Identities=27%  Similarity=0.455  Sum_probs=36.7

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCC---cEEEcCEEEEecChHH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDG---CVYEANYVILSASIGV  254 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VI~A~p~~~  254 (496)
                      .|+++++|++|++|+.+++++.+.+.+|   +++.+|.||+|++...
T Consensus       226 ~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p  272 (462)
T PRK06416        226 RGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRP  272 (462)
T ss_pred             cCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCcc
Confidence            5899999999999998777777776655   6799999999987543

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.67  E-value=4.7e-05  Score=70.47  Aligned_cols=33  Identities=30%  Similarity=0.533  Sum_probs=30.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ++||+|||||++||+||..|+++|. ++.|+-..
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~~Gk-~c~iv~~g   34 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQAGK-RCAIVNRG   34 (421)
T ss_pred             cccEEEEcCcHHHHHHHHHHHhcCC-cEEEEeCC
Confidence            6899999999999999999999999 68888653

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=97.66  E-value=4.7e-05  Score=70.69  Aligned_cols=38  Identities=34%  Similarity=0.566  Sum_probs=33.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHC----CCCcEEEEeeCCCC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAEN----GIEDILILEASDRI   42 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~----G~~~V~vlEa~~~~   42 (496)
                      +.++||+|||||.+|++.||.|+++    |+ +|+|+|+.+..
T Consensus        84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl-~VvVVErddty  125 (509)
T KOG2853|consen   84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGL-NVVVVERDDTY  125 (509)
T ss_pred             ccccCEEEECCCccchhhHHHHHHHhhcCCc-eEEEEeccCcc
Confidence            3578999999999999999999874    78 79999998743

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=97.64  E-value=0.00013  Score=68.70  Aligned_cols=70  Identities=24%  Similarity=0.404  Sum_probs=48.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHC----CCCcEEEEeeCCCCCeEEEeeee--CCcEEeecceEEecCCCCCCChHHHHH
Q 010995            5 SRSPVIIIGAGVSGISAGKILAEN----GIEDILILEASDRIGGRVRNEKF--GGVSVELGAGWIAGVGGKESNPVWELA   78 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~----G~~~V~vlEa~~~~GGr~~t~~~--~g~~~d~G~~~~~~~~~~~~~~~~~l~   78 (496)
                      .++.+-|||+|+|||++|.+|.+.    |. ++-++|.-+..||..-....  .|+.+--| +-+..    ....+|+|+
T Consensus        21 dqKsaY~vG~GlAsLA~AvfLIRDg~m~G~-~IHilEelpl~GGSlDG~~~p~~GfV~RGG-RemEn----hfEc~WDlf   94 (587)
T COG4716          21 DQKSAYIVGGGLASLAAAVFLIRDGQMDGK-RIHILEELPLAGGSLDGAGSPHHGFVVRGG-REMEN----HFECLWDLF   94 (587)
T ss_pred             ccceeEEEccchHhhhheeEEEeccccCCc-eeEeeecCcccCCCCCCCCCcccceeecCc-HHHHH----HHHHHHHHH
Confidence            457799999999999999999886    45 79999999999997665332  24444333 22222    344566666


Q ss_pred             Hh
Q 010995           79 SK   80 (496)
Q Consensus        79 ~~   80 (496)
                      +.
T Consensus        95 rs   96 (587)
T COG4716          95 RS   96 (587)
T ss_pred             hc
Confidence            53

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.62  E-value=5.4e-05  Score=77.38  Aligned_cols=38  Identities=26%  Similarity=0.592  Sum_probs=34.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      +|+|||||.+|++||..|++.|. +|+|+|+. .+||.|-
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~-~V~lie~~-~~GG~c~   39 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGK-NVTLIDEA-DLGGTCL   39 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-cEEEEECC-cccccCC
Confidence            79999999999999999999999 69999986 4777655

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.61  E-value=6.8e-05  Score=77.39  Aligned_cols=42  Identities=26%  Similarity=0.438  Sum_probs=37.6

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      ..++||+|||||.|||.||..++++|. +|+|+|+....+|..
T Consensus         4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~-~V~l~~K~~~~rg~t   45 (562)
T COG1053           4 IHEFDVVVIGGGGAGLRAAIEAAEAGL-KVALLSKAPPKRGHT   45 (562)
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhcCC-cEEEEEccccCCCch
Confidence            467899999999999999999999999 699999988877533

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.59  E-value=0.00026  Score=77.02  Aligned_cols=41  Identities=17%  Similarity=0.174  Sum_probs=34.8

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .|++++++++|++|+.++.  .|.+.+|+++.+|++|+|+...
T Consensus        67 ~gv~~~~g~~V~~Id~~~k--~V~~~~g~~~~yD~LVlATGs~  107 (785)
T TIGR02374        67 HGITLYTGETVIQIDTDQK--QVITDAGRTLSYDKLILATGSY  107 (785)
T ss_pred             CCCEEEcCCeEEEEECCCC--EEEECCCcEeeCCEEEECCCCC
Confidence            5889999999999987654  5667788889999999999864

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.56  E-value=0.00098  Score=67.01  Aligned_cols=43  Identities=28%  Similarity=0.356  Sum_probs=37.0

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCc--EEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGC--VYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~--~~~ad~VI~A~p~~  253 (496)
                      .|.+++++++|++++..++++.+.+.+|+  ++++|.|++|+.-.
T Consensus       227 ~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~  271 (454)
T COG1249         227 GGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRK  271 (454)
T ss_pred             CCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCc
Confidence            47899999999999998887888887775  68999999999653

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=97.56  E-value=0.00011  Score=69.30  Aligned_cols=45  Identities=27%  Similarity=0.292  Sum_probs=39.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeCCCCCeEEEeee
Q 010995            5 SRSPVIIIGAGVSGISAGKILAEN--GIEDILILEASDRIGGRVRNEK   50 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~~~~GGr~~t~~   50 (496)
                      ..+.|+|||+|+||+++|++|.++  +. +|+|+|+.+.++|.++..-
T Consensus        19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~-~Vdi~Ek~PvPFGLvRyGV   65 (468)
T KOG1800|consen   19 STPRVCIVGSGPAGFYTAQHLLKRHPNA-HVDIFEKLPVPFGLVRYGV   65 (468)
T ss_pred             CCceEEEECCCchHHHHHHHHHhcCCCC-eeEeeecCCcccceeeecc
Confidence            456899999999999999999885  57 7999999999999888543

>PRK07846 mycothione reductase; Reviewed

Probab=97.54  E-value=0.00085  Score=68.35  Aligned_cols=44  Identities=20%  Similarity=0.336  Sum_probs=37.1

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      .|++++++++|++|+.+++++.|.+.+|+++.+|.||+|++...
T Consensus       219 ~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~p  262 (451)
T PRK07846        219 KRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVP  262 (451)
T ss_pred             cCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCcc
Confidence            36789999999999887777778887888899999999987543

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.53  E-value=0.001  Score=68.08  Aligned_cols=43  Identities=14%  Similarity=0.189  Sum_probs=37.2

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .|++++++++|++|+.+++++.|.+.+|+++.+|.||++++..
T Consensus       231 ~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~  273 (466)
T PRK07845        231 RGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSV  273 (466)
T ss_pred             CCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCC
Confidence            5899999999999987777788877788889999999998653

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.52  E-value=0.0011  Score=67.52  Aligned_cols=42  Identities=17%  Similarity=0.178  Sum_probs=34.6

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .|++++++++|++|+.+++.+.+.+ +|+++.+|.||+|+...
T Consensus       211 ~GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~~  252 (438)
T PRK07251        211 DGITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGRK  252 (438)
T ss_pred             cCCEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCCC
Confidence            5899999999999988766676665 45689999999998653

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.51  E-value=0.0011  Score=67.54  Aligned_cols=43  Identities=12%  Similarity=0.174  Sum_probs=35.1

Q ss_pred             cccceeeCceeEEEEEcCCc-eEEEeCCC-cEEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNG-VTVKTEDG-CVYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~-v~V~~~~G-~~~~ad~VI~A~p~~  253 (496)
                      .|+++++|+.|++|+.++++ +.|.+.+| +.+.+|.||++++..
T Consensus       220 ~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~  264 (450)
T TIGR01421       220 EGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRK  264 (450)
T ss_pred             cCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCC
Confidence            58999999999999876544 66777777 579999999998754

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.48  E-value=0.0014  Score=66.81  Aligned_cols=43  Identities=14%  Similarity=0.246  Sum_probs=37.0

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .|++++++++|++|+.+++++.|.+.+|+++.+|.||+|++..
T Consensus       220 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~  262 (446)
T TIGR01424       220 RGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRS  262 (446)
T ss_pred             CCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCC
Confidence            5899999999999988777777777788889999999998753

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.47  E-value=0.00093  Score=72.75  Aligned_cols=42  Identities=21%  Similarity=0.325  Sum_probs=35.5

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecCh
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASI  252 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~  252 (496)
                      .|++|++++.|++|..++....|++.+|+++.+|.||++++.
T Consensus       195 ~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~  236 (785)
T TIGR02374       195 KGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGI  236 (785)
T ss_pred             cCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCC
Confidence            689999999999998655445578888989999999999875

>PLN02507 glutathione reductase

Probab=97.46  E-value=0.0016  Score=67.23  Aligned_cols=43  Identities=19%  Similarity=0.308  Sum_probs=37.4

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .|+++++++.|++|+.+++++.|.+.+|+++.+|.||++++..
T Consensus       257 ~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~  299 (499)
T PLN02507        257 RGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRA  299 (499)
T ss_pred             CCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCC
Confidence            5899999999999998777777888788889999999998754

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.46  E-value=0.00034  Score=68.12  Aligned_cols=35  Identities=31%  Similarity=0.406  Sum_probs=27.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCC-CCcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENG-IEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G-~~~V~vlEa~~~   41 (496)
                      .+|+|+||.|+++|+.|..|.+.+ . +++.||+++.
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~-~~~f~e~~~~   37 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDL-KALFLERRPS   37 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH----EEEEES-SS
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCC-CEEEEecCCC
Confidence            479999999999999999999987 7 6999998764

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=97.46  E-value=4.7e-05  Score=69.10  Aligned_cols=49  Identities=29%  Similarity=0.569  Sum_probs=39.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC------CCcEEEEeeCCCCCeEEEeeeeCCcEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENG------IEDILILEASDRIGGRVRNEKFGGVSV   56 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G------~~~V~vlEa~~~~GGr~~t~~~~g~~~   56 (496)
                      ..++|+||||||.|.++||+|++++      . +|+++|.+...||.  |-..+|+..
T Consensus         9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~-~ItifEs~~IA~ga--SGkasgfLa   63 (380)
T KOG2852|consen    9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGEL-DITIFESKEIAGGA--SGKASGFLA   63 (380)
T ss_pred             CceEEEEECCCceeeeeehhhhcCCccCCCce-eEEEEeeccccccc--ccccchhhH
Confidence            3578999999999999999999987      6 79999999888873  333444433

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.45  E-value=0.0014  Score=67.42  Aligned_cols=34  Identities=35%  Similarity=0.586  Sum_probs=31.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|+|||||.+|+-+|..|++.|. +|+|+|+++
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~g~-~Vtli~~~~  216 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRLGA-EVTILEALP  216 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCC
Confidence            4689999999999999999999999 699999754

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.44  E-value=0.0015  Score=66.97  Aligned_cols=34  Identities=32%  Similarity=0.593  Sum_probs=30.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|+|||||..|+-+|..|++.|. +|+|+|+.+
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~~G~-~Vtlv~~~~  205 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKNYGV-DVTIVEFLD  205 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCC-eEEEEecCC
Confidence            4689999999999999999999999 699998654

>PRK06370 mercuric reductase; Validated

Probab=97.43  E-value=0.0016  Score=66.75  Aligned_cols=35  Identities=23%  Similarity=0.525  Sum_probs=31.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..+|+|||||.+|+-+|..|++.|. +|+|+|+.++
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~-~Vtli~~~~~  205 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGS-EVTVIERGPR  205 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEEcCCC
Confidence            4689999999999999999999999 6999998654

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.41  E-value=0.00015  Score=75.25  Aligned_cols=36  Identities=28%  Similarity=0.541  Sum_probs=33.2

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..++|+||||+|.+|...|..|++.|+ +|+|||+..
T Consensus         5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~-~VllLEaG~   40 (542)
T COG2303           5 KMEYDYVIVGSGSAGSVLAARLSDAGL-SVLVLEAGG   40 (542)
T ss_pred             cCCCCEEEECCCchhHHHHHHhcCCCC-eEEEEeCCC
Confidence            467999999999999999999999999 699999963

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.38  E-value=0.0041  Score=62.15  Aligned_cols=34  Identities=32%  Similarity=0.497  Sum_probs=30.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ..+||+|||||.||.-||...++.|. +++|+=-+
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaARmG~-ktlLlT~~   36 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAARMGA-KTLLLTLN   36 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhccCC-eEEEEEcC
Confidence            45999999999999999999999999 58888654

>TIGR03452 mycothione_red mycothione reductase

Probab=97.38  E-value=0.0022  Score=65.46  Aligned_cols=43  Identities=19%  Similarity=0.364  Sum_probs=36.6

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .|+++++++.|++|+.+++++.|++.+|+++++|.||+|++..
T Consensus       222 ~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~  264 (452)
T TIGR03452       222 KKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRV  264 (452)
T ss_pred             cCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccC
Confidence            3678999999999998777787877778889999999999754

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.37  E-value=0.0023  Score=65.73  Aligned_cols=35  Identities=34%  Similarity=0.739  Sum_probs=31.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..+|+|||||.+|+-+|..|++.|. +|+|+|++++
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~-~Vtli~~~~~  214 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGV-EVTVVEAADR  214 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEEecCc
Confidence            4689999999999999999999999 6999998653

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.34  E-value=0.0028  Score=64.81  Aligned_cols=34  Identities=29%  Similarity=0.517  Sum_probs=31.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|+|||||.+|+-+|..|++.|. +|+|+|+.+
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~  203 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGT-KVTIVEMAP  203 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-eEEEEecCC
Confidence            4689999999999999999999999 699999755

>TIGR02053 MerA mercuric reductase

Probab=97.33  E-value=0.0024  Score=65.41  Aligned_cols=35  Identities=31%  Similarity=0.586  Sum_probs=31.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..+|+|||||.+|+-+|..|++.|. +|+|+|++++
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~g~-~Vtli~~~~~  200 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARLGS-EVTILQRSDR  200 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-cEEEEEcCCc
Confidence            4689999999999999999999999 6999998653

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.32  E-value=0.0027  Score=65.02  Aligned_cols=35  Identities=31%  Similarity=0.607  Sum_probs=31.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..+|+|||||..|+-.|..|++.|. +|+|+|+.++
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~-~Vtlie~~~~  208 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGA-QVTVVEYLDR  208 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCCC
Confidence            4789999999999999999999999 6999997553

>TIGR03452 mycothione_red mycothione reductase

Probab=97.31  E-value=0.00031  Score=71.61  Aligned_cols=40  Identities=28%  Similarity=0.348  Sum_probs=33.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN   48 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t   48 (496)
                      +++||+|||||.+|..||.  +++|. +|+|+|+ +.+||.|-.
T Consensus         1 ~~yD~vvIG~G~~g~~aa~--~~~g~-~V~lie~-~~~GGtC~n   40 (452)
T TIGR03452         1 RHYDLIIIGTGSGNSIPDP--RFADK-RIAIVEK-GTFGGTCLN   40 (452)
T ss_pred             CCcCEEEECCCHHHHHHHH--HHCCC-eEEEEeC-CCCCCeeec
Confidence            3689999999999999864  45799 6999997 578997753

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.29  E-value=0.0032  Score=64.09  Aligned_cols=42  Identities=19%  Similarity=0.294  Sum_probs=35.4

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .|++++++++|++|+.+++++.+.+.++ ++.+|.||+|++..
T Consensus       212 ~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~  253 (441)
T PRK08010        212 QGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQ  253 (441)
T ss_pred             CCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCC
Confidence            6899999999999998777777777665 68999999998644

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.27  E-value=0.00036  Score=69.89  Aligned_cols=42  Identities=7%  Similarity=0.169  Sum_probs=34.1

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      .|+++++++.|..|..++.  .|.+.+|+++.+|++|+|+....
T Consensus        71 ~~i~~~~g~~V~~id~~~~--~v~~~~g~~~~yd~LViATGs~~  112 (396)
T PRK09754         71 NNVHLHSGVTIKTLGRDTR--ELVLTNGESWHWDQLFIATGAAA  112 (396)
T ss_pred             CCCEEEcCCEEEEEECCCC--EEEECCCCEEEcCEEEEccCCCC
Confidence            4788999999999988754  45556788899999999998654

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.25  E-value=0.00034  Score=71.08  Aligned_cols=36  Identities=22%  Similarity=0.430  Sum_probs=31.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeCCCCC
Q 010995            7 SPVIIIGAGVSGISAGKILAEN--GIEDILILEASDRIG   43 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~~~~G   43 (496)
                      .+|||||||.+|++||..|++.  +. +|+|+|+++.++
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~-~I~li~~~~~~~   39 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKES-DIIIFEKDRDMS   39 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCC-CEEEEECCCCcc
Confidence            4799999999999999999987  56 699999998654

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=97.25  E-value=0.0029  Score=64.11  Aligned_cols=34  Identities=32%  Similarity=0.586  Sum_probs=30.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|+|||||.+|+-+|..|++.|. +|+++++++
T Consensus       137 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtli~~~~  170 (427)
T TIGR03385       137 VENVVIIGGGYIGIEMAEALRERGK-NVTLIHRSE  170 (427)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-cEEEEECCc
Confidence            4689999999999999999999999 699999754

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.24  E-value=0.003  Score=64.46  Aligned_cols=34  Identities=29%  Similarity=0.487  Sum_probs=30.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|+|||||.+|+-+|..|++.|. +|+++++++
T Consensus       149 ~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtli~~~~  182 (444)
T PRK09564        149 IKNIVIIGAGFIGLEAVEAAKHLGK-NVRIIQLED  182 (444)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC-cEEEEeCCc
Confidence            4689999999999999999999999 699998754

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.24  E-value=0.0046  Score=61.47  Aligned_cols=42  Identities=29%  Similarity=0.432  Sum_probs=37.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      ...||+|||||.+|-.||.--+-+|. +|.++|+.|..-|..+
T Consensus        66 ~~fDVLIIGGGAtGaGcALDA~TRGL-ktaLVE~~DF~SGTSS  107 (680)
T KOG0042|consen   66 HEFDVLIIGGGATGAGCALDAATRGL-KTALVEAGDFASGTSS  107 (680)
T ss_pred             CcccEEEECCCccCcceeehhhcccc-eeEEEecccccCCccc
Confidence            46899999999999999999999999 6999999998766443

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=97.24  E-value=0.0024  Score=62.64  Aligned_cols=57  Identities=19%  Similarity=0.142  Sum_probs=46.6

Q ss_pred             cccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCC-cEEEcCEEEEecCh
Q 010995          188 ERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDG-CVYEANYVILSASI  252 (496)
Q Consensus       188 ~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G-~~~~ad~VI~A~p~  252 (496)
                      .+-.+.+++.|...+.+      .|++|+++++|++|  +++++.|.+.++ ..++||+||+|+.-
T Consensus        82 S~~A~sVv~~L~~~l~~------~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG  139 (376)
T TIGR03862        82 EMKAAPLLRAWLKRLAE------QGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGG  139 (376)
T ss_pred             CCCHHHHHHHHHHHHHH------CCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCC
Confidence            45688899999998887      79999999999999  344577776543 46999999999975

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK07846 mycothione reductase; Reviewed

Probab=97.24  E-value=0.00031  Score=71.56  Aligned_cols=38  Identities=26%  Similarity=0.322  Sum_probs=32.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      .+||+|||||.+|.+||..  +.|. +|+|+|+ +.+||.|-
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~-~V~lie~-~~~GGtC~   38 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADK-RIAIVEK-GTFGGTCL   38 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCC-eEEEEeC-CCCCCccc
Confidence            3899999999999999866  4699 6999997 56888665

>PRK14727 putative mercuric reductase; Provisional

Probab=97.21  E-value=0.0044  Score=63.78  Aligned_cols=43  Identities=19%  Similarity=0.223  Sum_probs=36.2

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      .|++++++++|++|+.+++++.|.+.++ ++.+|.||+|++...
T Consensus       241 ~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~p  283 (479)
T PRK14727        241 EGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHA  283 (479)
T ss_pred             CCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCC
Confidence            5899999999999998777777777665 689999999997643

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.17  E-value=0.0045  Score=63.52  Aligned_cols=43  Identities=14%  Similarity=0.158  Sum_probs=35.3

Q ss_pred             cccceeeCceeEEEEEcCCc-eEEEeCCCcEEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNG-VTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .|+++++++.|++|+.++++ +.|.+.+|+++.+|.||+|+...
T Consensus       244 ~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~  287 (486)
T TIGR01423       244 NGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRV  287 (486)
T ss_pred             cCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCC
Confidence            58999999999999876544 55777777789999999998743

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK14694 putative mercuric reductase; Provisional

Probab=97.10  E-value=0.0066  Score=62.32  Aligned_cols=43  Identities=9%  Similarity=0.100  Sum_probs=35.2

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      .|++++++++|++|+.+++.+.+.+.++ ++.+|.||+|++...
T Consensus       231 ~GI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~p  273 (468)
T PRK14694        231 EGIEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGRTP  273 (468)
T ss_pred             CCCEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCC
Confidence            5899999999999988776666776555 799999999986543

>PRK13748 putative mercuric reductase; Provisional

Probab=97.09  E-value=0.0054  Score=64.58  Aligned_cols=42  Identities=10%  Similarity=0.140  Sum_probs=35.4

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .|++|+++++|++|+.+++.+.+.+.++ ++.+|.||+|++..
T Consensus       323 ~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~  364 (561)
T PRK13748        323 EGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRA  364 (561)
T ss_pred             CCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCC
Confidence            5899999999999988777777777665 79999999998754

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.09  E-value=0.0064  Score=62.78  Aligned_cols=44  Identities=11%  Similarity=0.048  Sum_probs=36.8

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      .|+++++++.|++|+..++.+.|.+.+|+++.+|.||++++...
T Consensus       235 ~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~p  278 (499)
T PTZ00052        235 QGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKP  278 (499)
T ss_pred             cCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCC
Confidence            58999999999999876666777777888899999999987543

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.08  E-value=0.00056  Score=69.13  Aligned_cols=37  Identities=16%  Similarity=0.362  Sum_probs=32.9

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      .++++|||||||.+|+++|..|.+.++ +|+|+|++++
T Consensus         8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~-~ItlI~~~~~   44 (424)
T PTZ00318          8 LKKPNVVVLGTGWAGAYFVRNLDPKKY-NITVISPRNH   44 (424)
T ss_pred             CCCCeEEEECCCHHHHHHHHHhCcCCC-eEEEEcCCCC
Confidence            457899999999999999999987788 6999998774

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=96.99  E-value=0.0068  Score=63.03  Aligned_cols=58  Identities=26%  Similarity=0.132  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEe---CCC--cEEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKT---EDG--CVYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~---~~G--~~~~ad~VI~A~p~~~  254 (496)
                      -..++..+++.+.+      .|++|+++++|++|..+++++. |++   .+|  .++.|+.||+|+.+..
T Consensus       127 p~~l~~al~~~A~~------~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa  190 (516)
T TIGR03377       127 PFRLVAANVLDAQE------HGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA  190 (516)
T ss_pred             HHHHHHHHHHHHHH------cCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence            45677777777766      7999999999999998877654 443   234  3689999999998754

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PLN02785 Protein HOTHEAD

Probab=96.94  E-value=0.00097  Score=69.82  Aligned_cols=34  Identities=26%  Similarity=0.522  Sum_probs=31.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|+||||||.+|+.+|..|++ +. +|+|||+..
T Consensus        54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~-~VLllE~G~   87 (587)
T PLN02785         54 SAYDYIVVGGGTAGCPLAATLSQ-NF-SVLLLERGG   87 (587)
T ss_pred             ccCCEEEECcCHHHHHHHHHHhc-CC-cEEEEecCC
Confidence            46999999999999999999999 57 699999975

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=96.93  E-value=0.00089  Score=67.45  Aligned_cols=40  Identities=35%  Similarity=0.725  Sum_probs=36.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      ..+|+|||+|..||.+|..|+++|+ +|+|+|+.+++||+.
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G~-~v~l~e~~~~~~~~~  175 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRGK-KVTLIEAADRLGGQL  175 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCC-eEEEEEcccccchhh
Confidence            4789999999999999999999999 699999999988743

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.93  E-value=0.00086  Score=62.31  Aligned_cols=36  Identities=28%  Similarity=0.556  Sum_probs=32.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      ...|.|||||+||--|||.++++|+ .|.|+|-++.-
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv-~V~L~EMRp~k   38 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGV-PVILYEMRPVK   38 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCC-cEEEEEccccc
Confidence            4579999999999999999999999 69999987643

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=96.87  E-value=0.014  Score=60.12  Aligned_cols=43  Identities=19%  Similarity=0.125  Sum_probs=34.4

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCC---cEEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDG---CVYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VI~A~p~~  253 (496)
                      .|++|++++.|++|...++++.|+..++   +++.+|.||+|++..
T Consensus       233 ~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~  278 (484)
T TIGR01438       233 HGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRD  278 (484)
T ss_pred             cCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCC
Confidence            5899999999999987766666665444   379999999999753

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.84  E-value=0.0077  Score=58.97  Aligned_cols=40  Identities=38%  Similarity=0.537  Sum_probs=32.3

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC-CCCCe
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEAS-DRIGG   44 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~-~~~GG   44 (496)
                      ...+||||||||.||.-||..-++-|. +-++|-.+ +.+|-
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga-~TlLlT~~ld~Ig~   66 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGA-RTLLLTHNLDTIGE   66 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCC-ceEEeecccccccc
Confidence            356799999999999999999999999 57777554 44443

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=96.77  E-value=0.002  Score=64.16  Aligned_cols=40  Identities=18%  Similarity=0.324  Sum_probs=32.0

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .|++++++++|++|+.++.  .|.+ +++++.+|++|+|+...
T Consensus        71 ~gv~~~~~~~V~~id~~~~--~v~~-~~~~~~yd~LVlATG~~  110 (377)
T PRK04965         71 FNLRLFPHTWVTDIDAEAQ--VVKS-QGNQWQYDKLVLATGAS  110 (377)
T ss_pred             CCCEEECCCEEEEEECCCC--EEEE-CCeEEeCCEEEECCCCC
Confidence            5788999999999988665  3444 45689999999999864

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.75  E-value=0.0021  Score=60.20  Aligned_cols=44  Identities=23%  Similarity=0.440  Sum_probs=40.5

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEe
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN   48 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t   48 (496)
                      .+.+|-.|||||-.|+++|++.++.|. +|.|+|..-++||.|-.
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~GA-kv~l~E~~f~lGGTCVn   61 (478)
T KOG0405|consen   18 VKDFDYLVIGGGSGGVASARRAASHGA-KVALCELPFGLGGTCVN   61 (478)
T ss_pred             ccccceEEEcCCcchhHHhHHHHhcCc-eEEEEecCCCcCceEEe
Confidence            457899999999999999999999999 69999999899998765

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=96.64  E-value=0.019  Score=58.12  Aligned_cols=38  Identities=24%  Similarity=0.372  Sum_probs=31.6

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecCh
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASI  252 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~  252 (496)
                      .|++++++++|++|..+    .|.+.+|+++.+|.||++++.
T Consensus       241 ~gV~v~~~~~v~~v~~~----~v~~~~g~~i~~d~vi~~~G~  278 (424)
T PTZ00318        241 LGVDIRTKTAVKEVLDK----EVVLKDGEVIPTGLVVWSTGV  278 (424)
T ss_pred             CCCEEEeCCeEEEEeCC----EEEECCCCEEEccEEEEccCC
Confidence            69999999999999743    355678889999999999863

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=0.0023  Score=59.78  Aligned_cols=34  Identities=26%  Similarity=0.463  Sum_probs=31.5

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEee
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEA   38 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa   38 (496)
                      ...+|.||||||.+||+||.+.+..|. +|.+|+.
T Consensus        17 sydyDLIviGgGSgGLacaKeAa~~G~-kV~~lDf   50 (503)
T KOG4716|consen   17 SYDYDLIVIGGGSGGLACAKEAADLGA-KVACLDF   50 (503)
T ss_pred             cCCccEEEEcCCcchhhHHHHHHhcCC-cEEEEee
Confidence            356899999999999999999999999 6999997

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=96.30  E-value=0.0038  Score=61.81  Aligned_cols=33  Identities=18%  Similarity=0.370  Sum_probs=28.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHC---CCCcEEEEeeCCC
Q 010995            8 PVIIIGAGVSGISAGKILAEN---GIEDILILEASDR   41 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~---G~~~V~vlEa~~~   41 (496)
                      +|||||||.+|+.+|..|.++   +. +|+|+|+++.
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~-~I~li~~~~~   36 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGV-RVTLINPSST   36 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCC-EEEEECCCCC
Confidence            599999999999999999754   57 7999998765

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.10  E-value=0.0071  Score=62.32  Aligned_cols=34  Identities=32%  Similarity=0.558  Sum_probs=31.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .++|+|||+|.+|+++|..|+++|+ +|+++|+++
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~   49 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGD   49 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            5689999999999999999999999 699999765

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=95.94  E-value=0.0081  Score=51.52  Aligned_cols=31  Identities=29%  Similarity=0.546  Sum_probs=28.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +|+|||||-.|.+.|..|+++|+ +|+|+.++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~-~V~l~~~~   31 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGH-EVTLWGRD   31 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTE-EEEEETSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCC-EEEEEecc
Confidence            58999999999999999999999 79999764

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.70  E-value=0.012  Score=60.29  Aligned_cols=34  Identities=29%  Similarity=0.562  Sum_probs=31.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      +|.|||.|.+|++||+.|.++|+ +|++.|++...
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGW-EVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCch
Confidence            59999999999999999999999 69999987654

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.69  E-value=0.014  Score=51.26  Aligned_cols=32  Identities=28%  Similarity=0.535  Sum_probs=27.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      +|.|||||..|..-|..++.+|+ +|+++|.++
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~   32 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSP   32 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECCh
Confidence            48999999999999999999999 799999753

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=95.65  E-value=0.022  Score=50.28  Aligned_cols=44  Identities=25%  Similarity=0.410  Sum_probs=36.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC---C-CCCeEEEeee
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS---D-RIGGRVRNEK   50 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~---~-~~GGr~~t~~   50 (496)
                      +.+|+|||+|+++-+||.+++++-. +-+|+|.-   + -+||.+.|.+
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaarael-kPllfEG~~~~~i~pGGQLtTTT   55 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAEL-KPLLFEGMMANGIAPGGQLTTTT   55 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhccc-CceEEeeeeccCcCCCceeeeee
Confidence            4589999999999999999999999 59999973   2 3577777644

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.55  E-value=0.008  Score=56.46  Aligned_cols=39  Identities=28%  Similarity=0.573  Sum_probs=30.4

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR   45 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr   45 (496)
                      ...+||.|||||++|-+||.+-+++|++ --|+  .+|+||.
T Consensus       209 k~~yDVLvVGgGPAgaaAAiYaARKGiR-TGl~--aerfGGQ  247 (520)
T COG3634         209 KDAYDVLVVGGGPAGAAAAIYAARKGIR-TGLV--AERFGGQ  247 (520)
T ss_pred             cCCceEEEEcCCcchhHHHHHHHhhcch-hhhh--hhhhCCe
Confidence            3578999999999999999999999994 3333  1355553

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=95.48  E-value=0.014  Score=56.26  Aligned_cols=70  Identities=24%  Similarity=0.359  Sum_probs=45.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHC----CCCcEEEEeeCC--CCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHH
Q 010995            5 SRSPVIIIGAGVSGISAGKILAEN----GIEDILILEASD--RIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELA   78 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~----G~~~V~vlEa~~--~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~   78 (496)
                      ..+||+|||||+.|++.|..|...    -. +|+|+|+.+  ..|+    +...    +.--..+..    ..+.-..++
T Consensus        35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~-kv~Lld~~~s~kl~~----~~~~----~~f~Nrvss----~s~~s~~~f  101 (481)
T KOG3855|consen   35 AKYDVVIVGGGPVGLALAAALGSNPPFQDK-KVLLLDAGDSPKLGD----FKPS----ETFSNRVSS----ISPASISLF  101 (481)
T ss_pred             ccCCEEEECCchHHHHHHHHhccCCccchh-eeeEEecccCccccc----cccC----ccccceeec----CCcchHHHH
Confidence            478999999999999999999864    34 699999984  3332    2211    111222332    445556677


Q ss_pred             HhcCCcccc
Q 010995           79 SKSGLRTCF   87 (496)
Q Consensus        79 ~~lgl~~~~   87 (496)
                      +.+|..+..
T Consensus       102 k~~~awd~i  110 (481)
T KOG3855|consen  102 KSIGAWDHI  110 (481)
T ss_pred             HhcCHHHHh
Confidence            777765544

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=95.46  E-value=0.016  Score=59.33  Aligned_cols=38  Identities=32%  Similarity=0.469  Sum_probs=32.9

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHC-CCCcEEEEeeCCCC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAEN-GIEDILILEASDRI   42 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~-G~~~V~vlEa~~~~   42 (496)
                      ...+|.||||||-||...|..|++. .. +|+||||....
T Consensus        55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~-~VLLLEaGg~~   93 (623)
T KOG1238|consen   55 DSSYDYIVVGGGTAGCVLAARLSENPNW-SVLLLEAGGDP   93 (623)
T ss_pred             ccCCCEEEECCCchhHHHHHhhccCCCc-eEEEEecCCCC
Confidence            3579999999999999999999997 46 69999996544

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=95.46  E-value=0.013  Score=54.09  Aligned_cols=33  Identities=24%  Similarity=0.415  Sum_probs=27.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC-------CCcEEEEee
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENG-------IEDILILEA   38 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G-------~~~V~vlEa   38 (496)
                      ++.+|+|||+|+.||++|..+.+.+       . +|+|++-
T Consensus         2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~-~vtv~~D   41 (342)
T KOG3923|consen    2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVA-KVTVISD   41 (342)
T ss_pred             CCccEEEEcCCeechhHHHHHHHhhhhccCCcc-eEEEecC
Confidence            4678999999999999999998854       3 5888864

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=95.40  E-value=0.029  Score=46.66  Aligned_cols=36  Identities=28%  Similarity=0.424  Sum_probs=32.2

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      .+.++|+|||||-+|-++++.|++.|.++|+|+-|+
T Consensus        10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen   10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            457899999999999999999999999669999864

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.37  E-value=0.022  Score=58.40  Aligned_cols=36  Identities=19%  Similarity=0.553  Sum_probs=32.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      ..+|+|||||..|+-.|..|++.|. +|+|+|+.+++
T Consensus       174 ~~~vvIiGgG~iG~E~A~~l~~~G~-~Vtlv~~~~~i  209 (471)
T PRK06467        174 PKRLLVMGGGIIGLEMGTVYHRLGS-EVDVVEMFDQV  209 (471)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-CEEEEecCCCC
Confidence            3689999999999999999999999 69999987753

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.33  E-value=0.025  Score=54.37  Aligned_cols=34  Identities=21%  Similarity=0.309  Sum_probs=31.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .++|+|||+|..|..-|..++.+|+ +|+++|.++
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~   40 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAP   40 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence            3679999999999999999999999 799999754

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=95.25  E-value=0.027  Score=57.74  Aligned_cols=36  Identities=33%  Similarity=0.696  Sum_probs=32.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      .++|+|||||.+|+-.|..|++.|. +|+|+|+++++
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~g~-~Vtli~~~~~~  204 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRLGV-KVTVFERGDRI  204 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCc
Confidence            4689999999999999999999999 69999987654

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=95.21  E-value=0.025  Score=52.56  Aligned_cols=44  Identities=39%  Similarity=0.629  Sum_probs=36.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC--------CCCCeEEEee
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS--------DRIGGRVRNE   49 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~--------~~~GGr~~t~   49 (496)
                      .+.+|+|||||..|.-||....--|- +|+++|.+        +..|||+.+.
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f~~rv~~~  218 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLFGGRVHTL  218 (371)
T ss_pred             CCccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhhCceeEEE
Confidence            45789999999999999999999999 79999987        3456666553

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.20  E-value=0.027  Score=57.51  Aligned_cols=35  Identities=29%  Similarity=0.640  Sum_probs=32.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      +.++|+|||+|.+|+++|..|+++|+ +|+++|..+
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~   38 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKE   38 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            46889999999999999999999999 799999864

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.20  E-value=0.026  Score=53.69  Aligned_cols=34  Identities=29%  Similarity=0.598  Sum_probs=31.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|.|||+|..|..-|..|+++|+ +|+++|.++
T Consensus         5 ~~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~   38 (286)
T PRK07819          5 IQRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTE   38 (286)
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence            4589999999999999999999999 799999754

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=95.16  E-value=0.028  Score=57.63  Aligned_cols=43  Identities=16%  Similarity=0.269  Sum_probs=36.4

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .|++++++++|++|+.+++++.+++.+|+++++|.||+|++..
T Consensus       229 ~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  271 (461)
T PRK05249        229 SGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRT  271 (461)
T ss_pred             cCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCC
Confidence            5889999999999987777777777778889999999998754

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=95.15  E-value=0.026  Score=57.43  Aligned_cols=36  Identities=25%  Similarity=0.444  Sum_probs=32.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      ..+|+|||||..|+-.|..|++.|. +|+|+|+++++
T Consensus       148 ~~~vvViGgG~ig~E~A~~l~~~g~-~Vtli~~~~~l  183 (438)
T PRK13512        148 VDKALVVGAGYISLEVLENLYERGL-HPTLIHRSDKI  183 (438)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-cEEEEeccccc
Confidence            4689999999999999999999999 69999987754

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.03  E-value=0.2  Score=52.64  Aligned_cols=58  Identities=16%  Similarity=0.066  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEc-CCceE-EE---eCCCc--EEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHS-RNGVT-VK---TEDGC--VYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~-~~~v~-V~---~~~G~--~~~ad~VI~A~p~~~  254 (496)
                      -..|...|.+.+.+      .|++|+.++.++++..+ +++|. |.   ..+|+  .+.|+.||+|+.-..
T Consensus       125 G~~i~~~L~~~~~~------~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  189 (570)
T PRK05675        125 GHALLHTLYQGNLK------NGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAG  189 (570)
T ss_pred             HHHHHHHHHHHHhc------cCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence            45688888877765      69999999999999875 45554 32   24563  578999999997533

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.99  E-value=0.029  Score=54.03  Aligned_cols=33  Identities=30%  Similarity=0.503  Sum_probs=30.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .+|.|||+|..|.+.|..|+++|+ +|+++++++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~   35 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP   35 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence            369999999999999999999999 799999864

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=94.97  E-value=0.037  Score=48.02  Aligned_cols=34  Identities=24%  Similarity=0.453  Sum_probs=28.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ...+|+|+|+|.+|+.||..|...|. +|+++|..
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~   52 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDER   52 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESS
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCC
Confidence            45789999999999999999999999 79999863

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=94.89  E-value=0.043  Score=46.62  Aligned_cols=31  Identities=35%  Similarity=0.543  Sum_probs=28.4

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            9 VIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         9 VvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      |+|||+|..|...|+.|+++|. +|+++-++.
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc
Confidence            7899999999999999999999 799997644

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=94.75  E-value=0.03  Score=49.31  Aligned_cols=32  Identities=25%  Similarity=0.532  Sum_probs=26.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      +|+|||.|..||..|..|+++|+ +|+.+|.++
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~   33 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDE   33 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-H
T ss_pred             EEEEECCCcchHHHHHHHHhCCC-EEEEEeCCh
Confidence            69999999999999999999999 799998643

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=94.71  E-value=0.042  Score=57.08  Aligned_cols=34  Identities=38%  Similarity=0.424  Sum_probs=30.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|+|||||.+|+-+|..|++.|. +|+|+|+.+
T Consensus       352 ~k~VvViGgG~~g~E~A~~L~~~g~-~Vtli~~~~  385 (515)
T TIGR03140       352 GKDVAVIGGGNSGIEAAIDLAGIVR-HVTVLEFAD  385 (515)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCc-EEEEEEeCC
Confidence            4689999999999999999999999 799998754

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=94.70  E-value=0.32  Score=48.19  Aligned_cols=46  Identities=28%  Similarity=0.355  Sum_probs=38.9

Q ss_pred             cccceeeCceeEEEEEcC-CceE-EEeCCCcEEEcCEEEEecChHHHh
Q 010995          211 LDNRLKLNKVVRELQHSR-NGVT-VKTEDGCVYEANYVILSASIGVLQ  256 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~-~~v~-V~~~~G~~~~ad~VI~A~p~~~l~  256 (496)
                      .|+++++++.+.+++.+. +++. |.+.+|+++.||.||+.+.+..+-
T Consensus       268 kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t  315 (478)
T KOG1336|consen  268 KGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNT  315 (478)
T ss_pred             cCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccc
Confidence            699999999999998765 4454 999999999999999998776553

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=94.62  E-value=0.042  Score=60.23  Aligned_cols=37  Identities=19%  Similarity=0.377  Sum_probs=33.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIG   43 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~G   43 (496)
                      ..+++|||||..|+-+|..|++.|. +|+|+|..+++-
T Consensus       145 ~k~vvVIGgG~iGlE~A~~L~~~G~-~VtvVe~~~~ll  181 (847)
T PRK14989        145 SKRGAVVGGGLLGLEAAGALKNLGV-ETHVIEFAPMLM  181 (847)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEeccccch
Confidence            4679999999999999999999999 699999988753

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.60  E-value=0.044  Score=52.19  Aligned_cols=33  Identities=33%  Similarity=0.394  Sum_probs=30.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ..+|+|||+|..|.+.|..|+++|+ +|++++.+
T Consensus         3 ~~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~   35 (287)
T PRK08293          3 IKNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS   35 (287)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence            3579999999999999999999999 79999864

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.59  E-value=0.058  Score=52.13  Aligned_cols=38  Identities=42%  Similarity=0.557  Sum_probs=32.3

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      |++. +.+|+|||+|..|.+-|..|+++|+ +|+++-++.
T Consensus         1 ~~~~-~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~   38 (313)
T PRK06249          1 MDSE-TPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD   38 (313)
T ss_pred             CCCc-CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC
Confidence            5543 3479999999999999999999999 799998753

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.56  E-value=0.056  Score=46.65  Aligned_cols=35  Identities=11%  Similarity=0.282  Sum_probs=30.8

Q ss_pred             CCCCCEEEECCCH-HHHHHHHHHHHCCCCcEEEEeeC
Q 010995            4 TSRSPVIIIGAGV-SGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         4 ~~~~dVvIIGaGi-aGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ...++|+|||+|- +|..+|.+|.+.|. +|+|+.+.
T Consensus        42 l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~   77 (168)
T cd01080          42 LAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSK   77 (168)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECC
Confidence            3578999999995 79999999999999 69999864

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PTZ00058 glutathione reductase; Provisional

Probab=94.54  E-value=0.049  Score=56.86  Aligned_cols=35  Identities=17%  Similarity=0.307  Sum_probs=32.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..+|+|||||..|+-.|..|++.|. +|+|+|++++
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~-~Vtli~~~~~  271 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGA-ESYIFARGNR  271 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCC-cEEEEEeccc
Confidence            5789999999999999999999999 6999998664

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=94.53  E-value=0.051  Score=57.71  Aligned_cols=36  Identities=22%  Similarity=0.399  Sum_probs=32.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      ..+|+|||||..|+-.|..|++.|. +|+|+|+.+++
T Consensus       312 pk~VvIVGgG~iGvE~A~~l~~~G~-eVTLIe~~~~l  347 (659)
T PTZ00153        312 QNYMGIVGMGIIGLEFMDIYTALGS-EVVSFEYSPQL  347 (659)
T ss_pred             CCceEEECCCHHHHHHHHHHHhCCC-eEEEEeccCcc
Confidence            4589999999999999999999999 79999997764

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=94.50  E-value=0.026  Score=51.13  Aligned_cols=34  Identities=32%  Similarity=0.587  Sum_probs=27.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCC-cEEEEeeCCC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIE-DILILEASDR   41 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~-~V~vlEa~~~   41 (496)
                      +.+||||||||.+||-.|+..-.. +|+++-+++.
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~   35 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF   35 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence            368999999999999999986432 6888887653

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.50  E-value=0.042  Score=52.36  Aligned_cols=33  Identities=21%  Similarity=0.517  Sum_probs=30.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .+|+|||+|..|...|..|+++|+ +|++++.++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~   34 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQ   34 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence            469999999999999999999999 699998754

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=94.44  E-value=0.064  Score=47.92  Aligned_cols=35  Identities=26%  Similarity=0.423  Sum_probs=31.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +..+|+|||+|-.|...|..|++.|+.+++|+|..
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            46789999999999999999999999669999875

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=94.33  E-value=0.062  Score=54.80  Aligned_cols=34  Identities=18%  Similarity=0.374  Sum_probs=31.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .++|+|||||..|+-+|..|.+.|. +|+|+++++
T Consensus       272 gk~VvVIGgG~~a~d~A~~l~~~G~-~Vtlv~~~~  305 (449)
T TIGR01316       272 GKSVVVIGGGNTAVDSARTALRLGA-EVHCLYRRT  305 (449)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-EEEEEeecC
Confidence            4689999999999999999999999 699998764

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=94.29  E-value=0.06  Score=55.97  Aligned_cols=34  Identities=32%  Similarity=0.363  Sum_probs=31.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .++|+|||||.+|+-+|..|++.|. +|+|+++.+
T Consensus       351 gk~VvVVGgG~~g~e~A~~L~~~~~-~Vtlv~~~~  384 (517)
T PRK15317        351 GKRVAVIGGGNSGVEAAIDLAGIVK-HVTVLEFAP  384 (517)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC-EEEEEEECc
Confidence            4689999999999999999999999 799998754

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=94.28  E-value=0.07  Score=47.84  Aligned_cols=34  Identities=15%  Similarity=0.465  Sum_probs=31.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.++|+|||||-+|+..+..|.+.|. +|+|+...
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~   41 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEE   41 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            56789999999999999999999999 79999764

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.27  E-value=0.053  Score=55.22  Aligned_cols=37  Identities=24%  Similarity=0.460  Sum_probs=32.4

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      |.+-..++|+|+|.|.+|.+||..|.+ |. +|+|.|.+
T Consensus         1 ~~~~~~~~v~v~G~G~sG~a~~~~L~~-g~-~v~v~D~~   37 (454)
T PRK01368          1 MNSHTKQKIGVFGLGKTGISVYEELQN-KY-DVIVYDDL   37 (454)
T ss_pred             CcCCCCCEEEEEeecHHHHHHHHHHhC-CC-EEEEECCC
Confidence            666567899999999999999999995 99 79999954

>PRK10262 thioredoxin reductase; Provisional

Probab=94.25  E-value=0.068  Score=51.87  Aligned_cols=34  Identities=18%  Similarity=0.391  Sum_probs=31.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|+|||+|.+|+-.|..|++.|. +|+++++++
T Consensus       146 g~~vvVvGgG~~g~e~A~~l~~~~~-~Vtlv~~~~  179 (321)
T PRK10262        146 NQKVAVIGGGNTAVEEALYLSNIAS-EVHLIHRRD  179 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCC-EEEEEEECC
Confidence            5689999999999999999999999 799999864

>PRK06116 glutathione reductase; Validated

Probab=94.19  E-value=0.067  Score=54.63  Aligned_cols=36  Identities=19%  Similarity=0.306  Sum_probs=32.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      ..+|+|||+|.+|+-.|..|++.|. +|+++++++++
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~  202 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGS-ETHLFVRGDAP  202 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCC
Confidence            4689999999999999999999999 69999988764

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=94.19  E-value=0.16  Score=53.06  Aligned_cols=42  Identities=24%  Similarity=0.311  Sum_probs=35.6

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecCh
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASI  252 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~  252 (496)
                      .|.++++++.+++|..++....|...||..+.||-||.|+.+
T Consensus       200 ~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GI  241 (793)
T COG1251         200 LGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGI  241 (793)
T ss_pred             hcceeecccchhhhhcCcceeeEeecCCCcccceeEEEeccc
Confidence            688999999988888755545699999999999999999865

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.16  E-value=0.074  Score=50.81  Aligned_cols=33  Identities=33%  Similarity=0.442  Sum_probs=30.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ..+|.|||+|..|...|..|+++|+ +|++++.+
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~   36 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS   36 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            4679999999999999999999999 79999975

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=94.10  E-value=0.065  Score=48.87  Aligned_cols=67  Identities=22%  Similarity=0.391  Sum_probs=45.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCC-cEEeecceEEecCCCCCCChHHHHHHhcCCcc
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGG-VSVELGAGWIAGVGGKESNPVWELASKSGLRT   85 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g-~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~   85 (496)
                      .+++|||+|--|.+.|..|.+.|+ +|+++|..+..        ... ..-+.+.+.+.+     +..-.+.++++|+..
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~--------~~~~~~~~~~~~~v~g-----d~t~~~~L~~agi~~   66 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEER--------VEEFLADELDTHVVIG-----DATDEDVLEEAGIDD   66 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHH--------HHHHhhhhcceEEEEe-----cCCCHHHHHhcCCCc
Confidence            369999999999999999999999 79999986421        111 011234455543     223345777888765


Q ss_pred             cc
Q 010995           86 CF   87 (496)
Q Consensus        86 ~~   87 (496)
                      ..
T Consensus        67 aD   68 (225)
T COG0569          67 AD   68 (225)
T ss_pred             CC
Confidence            43

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=94.08  E-value=0.067  Score=56.09  Aligned_cols=36  Identities=14%  Similarity=0.291  Sum_probs=32.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      ..+|+|||||.+|+-.|..|++.|. +|+++++++++
T Consensus       143 g~~VvVIGgG~~g~E~A~~L~~~g~-~Vtli~~~~~~  178 (555)
T TIGR03143       143 GMDVFVIGGGFAAAEEAVFLTRYAS-KVTVIVREPDF  178 (555)
T ss_pred             CCEEEEECCCHHHHHHHHHHHccCC-EEEEEEeCCcc
Confidence            4689999999999999999999999 79999998753

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=93.96  E-value=0.061  Score=50.11  Aligned_cols=35  Identities=26%  Similarity=0.472  Sum_probs=32.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +..+|+|||+|-.|..+|..|++.|+.+++|+|..
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            56899999999999999999999997789999963

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.91  E-value=0.074  Score=50.53  Aligned_cols=34  Identities=29%  Similarity=0.519  Sum_probs=30.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|+|||+|..|.+.|..|+++|+ +|+++|.++
T Consensus         3 ~~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~   36 (282)
T PRK05808          3 IQKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISD   36 (282)
T ss_pred             ccEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCH
Confidence            3579999999999999999999999 799998653

>PRK12831 putative oxidoreductase; Provisional

Probab=93.89  E-value=0.083  Score=54.05  Aligned_cols=35  Identities=17%  Similarity=0.314  Sum_probs=31.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..++|+|||||..|+-+|..|.+.|. +|+|+++++
T Consensus       280 ~gk~VvVIGgG~va~d~A~~l~r~Ga-~Vtlv~r~~  314 (464)
T PRK12831        280 VGKKVAVVGGGNVAMDAARTALRLGA-EVHIVYRRS  314 (464)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcCC-EEEEEeecC
Confidence            34789999999999999999999999 699998754

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.88  E-value=0.049  Score=51.38  Aligned_cols=34  Identities=32%  Similarity=0.362  Sum_probs=29.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.+||+|||||-||+-||.-|+---- .|||||=.
T Consensus       353 ~gK~VAVIGGGNSGvEAAIDLAGiv~-hVtllEF~  386 (520)
T COG3634         353 KGKRVAVIGGGNSGVEAAIDLAGIVE-HVTLLEFA  386 (520)
T ss_pred             CCceEEEECCCcchHHHHHhHHhhhh-eeeeeecc
Confidence            46899999999999999999986544 69999943

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=93.86  E-value=0.069  Score=44.41  Aligned_cols=34  Identities=35%  Similarity=0.572  Sum_probs=30.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.+|+|||+|-.|...|..|++.|+.+++|+|..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            5689999999999999999999999789999863

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PLN02546 glutathione reductase

Probab=93.85  E-value=0.086  Score=55.04  Aligned_cols=36  Identities=14%  Similarity=0.304  Sum_probs=32.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      ..+|+|||||..|+-.|..|++.|. +|+|+|+.+++
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~-~Vtlv~~~~~i  287 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKS-DVHVFIRQKKV  287 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCC-eEEEEEecccc
Confidence            4689999999999999999999999 79999987754

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.78  E-value=0.27  Score=50.09  Aligned_cols=36  Identities=25%  Similarity=0.435  Sum_probs=32.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..++|+|+|.|-+|+++|..|+++|+ +|++.|..+.
T Consensus         4 ~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~~~   39 (445)
T PRK04308          4 QNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAELK   39 (445)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCC
Confidence            45689999999999999999999999 6999997654

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=93.78  E-value=0.075  Score=53.12  Aligned_cols=37  Identities=22%  Similarity=0.460  Sum_probs=33.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      ..++|+|+|-|.+|++||..|.+.|. +|++.|.++..
T Consensus         6 ~~~kv~V~GLG~sG~a~a~~L~~~G~-~v~v~D~~~~~   42 (448)
T COG0771           6 QGKKVLVLGLGKSGLAAARFLLKLGA-EVTVSDDRPAP   42 (448)
T ss_pred             cCCEEEEEecccccHHHHHHHHHCCC-eEEEEcCCCCc
Confidence            47889999999999999999999999 69999977654

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.76  E-value=0.075  Score=54.42  Aligned_cols=34  Identities=18%  Similarity=0.079  Sum_probs=31.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .++|+|+|.|.+|.+||..|.+.|. +|++.|.++
T Consensus         8 ~~~v~v~G~G~sG~~~~~~l~~~g~-~v~~~d~~~   41 (468)
T PRK04690          8 GRRVALWGWGREGRAAYRALRAHLP-AQALTLFCN   41 (468)
T ss_pred             CCEEEEEccchhhHHHHHHHHHcCC-EEEEEcCCC
Confidence            5689999999999999999999999 699999754

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=93.75  E-value=0.072  Score=50.86  Aligned_cols=33  Identities=27%  Similarity=0.607  Sum_probs=30.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .+|.|||+|..|.+.|..|+++|+ +|+++|.++
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~   36 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE   36 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence            579999999999999999999999 799999743

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=93.69  E-value=0.12  Score=49.87  Aligned_cols=41  Identities=17%  Similarity=0.373  Sum_probs=34.6

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      |+.-+..+|+|||||-.|-+.|+.|+..|+.+|+|+|.++.
T Consensus         1 ~~~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~   41 (321)
T PTZ00082          1 MTMIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN   41 (321)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            55556679999999999999999999999635999998654

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=93.68  E-value=0.094  Score=51.61  Aligned_cols=35  Identities=20%  Similarity=0.349  Sum_probs=30.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|+|||+|..|+-+|..|.+.|.++|+|+++++
T Consensus       172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~  206 (352)
T PRK12770        172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT  206 (352)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence            36899999999999999999999983399998743

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=93.61  E-value=0.11  Score=49.83  Aligned_cols=34  Identities=26%  Similarity=0.507  Sum_probs=30.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .++|.|||+|..|...|..|+++|+ +|+++|.+.
T Consensus         4 ~~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~   37 (295)
T PLN02545          4 IKKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDP   37 (295)
T ss_pred             cCEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence            4679999999999999999999999 799999754

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=93.53  E-value=0.13  Score=50.45  Aligned_cols=45  Identities=33%  Similarity=0.533  Sum_probs=36.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCC-CCcEEEEeeC--------CCCCeEEEeeee
Q 010995            6 RSPVIIIGAGVSGISAGKILAENG-IEDILILEAS--------DRIGGRVRNEKF   51 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G-~~~V~vlEa~--------~~~GGr~~t~~~   51 (496)
                      +.+|+|||||-.|.++|+.|++.| . +|+|.+++        ...++++.+...
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~~d~-~V~iAdRs~~~~~~i~~~~~~~v~~~~v   54 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQNGDG-EVTIADRSKEKCARIAELIGGKVEALQV   54 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHhhccccceeEEe
Confidence            467999999999999999999999 7 79999997        444565555443

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=93.53  E-value=0.11  Score=49.34  Aligned_cols=35  Identities=29%  Similarity=0.486  Sum_probs=31.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.++|+|||+|-+|-++|+.|++.|.++|+|+++.
T Consensus       126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~  160 (284)
T PRK12549        126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD  160 (284)
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence            45689999999999999999999998679999875

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=93.50  E-value=0.11  Score=49.65  Aligned_cols=34  Identities=21%  Similarity=0.353  Sum_probs=30.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|+|||+|.+|+-+|..|++.|. +|+++++.+
T Consensus       141 ~~~v~ViG~G~~~~e~a~~l~~~~~-~V~~v~~~~  174 (300)
T TIGR01292       141 NKEVAVVGGGDSAIEEALYLTRIAK-KVTLVHRRD  174 (300)
T ss_pred             CCEEEEECCChHHHHHHHHHHhhcC-EEEEEEeCc
Confidence            4689999999999999999999998 799999854

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=93.49  E-value=0.11  Score=53.53  Aligned_cols=35  Identities=31%  Similarity=0.544  Sum_probs=31.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .-.+|.|||+|..|..-|..|+++|+ +|+|+|.+.
T Consensus         6 ~i~~V~VIGaG~MG~gIA~~la~aG~-~V~l~D~~~   40 (507)
T PRK08268          6 SIATVAVIGAGAMGAGIAQVAAQAGH-TVLLYDARA   40 (507)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence            45679999999999999999999999 799999764

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=93.48  E-value=0.089  Score=52.88  Aligned_cols=34  Identities=15%  Similarity=0.334  Sum_probs=31.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|.|||.|..|+..|..|+++|+ +|++++.++
T Consensus         3 ~~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~   36 (415)
T PRK11064          3 FETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQ   36 (415)
T ss_pred             ccEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCH
Confidence            4579999999999999999999999 799999754

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.47  E-value=0.11  Score=50.26  Aligned_cols=34  Identities=24%  Similarity=0.568  Sum_probs=30.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|.|||+|..|.+.|..|+++|+ +|++++.+.
T Consensus         4 ~~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~   37 (311)
T PRK06130          4 IQNLAIIGAGTMGSGIAALFARKGL-QVVLIDVME   37 (311)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence            4679999999999999999999999 699998643

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=93.40  E-value=0.12  Score=47.14  Aligned_cols=35  Identities=26%  Similarity=0.633  Sum_probs=31.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCC--cEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIE--DILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~--~V~vlEa~   39 (496)
                      +..+|+|+|||-+|..+|+.|.+.|.+  +|.|++++
T Consensus        24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            456899999999999999999999985  69999885

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=93.39  E-value=0.62  Score=45.38  Aligned_cols=37  Identities=27%  Similarity=0.248  Sum_probs=32.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ...|+|.||-|++-|+.|..|.+.+..+++.||+.+.
T Consensus         4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~   40 (436)
T COG3486           4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPD   40 (436)
T ss_pred             cceeeEEEccCchHHHHHHHhccccCcceEEEecCCC
Confidence            5789999999999999999999986326999998763

>TIGR00518 alaDH alanine dehydrogenase

Probab=93.35  E-value=0.12  Score=51.10  Aligned_cols=34  Identities=35%  Similarity=0.535  Sum_probs=31.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ...+|+|||+|.+|+.+|..|...|. +|++++++
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~  199 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN  199 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence            45679999999999999999999999 69999875

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=93.34  E-value=0.069  Score=42.02  Aligned_cols=35  Identities=17%  Similarity=0.441  Sum_probs=30.6

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      .+.++|+|||||-.|..-+..|.+.|. +|+|+-..
T Consensus         5 l~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~   39 (103)
T PF13241_consen    5 LKGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPE   39 (103)
T ss_dssp             -TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCc
Confidence            357889999999999999999999999 79999775

>PRK04148 hypothetical protein; Provisional

Probab=93.32  E-value=0.086  Score=43.27  Aligned_cols=34  Identities=21%  Similarity=0.539  Sum_probs=30.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..+|++||.| .|.+.|..|++.|+ +|+.+|-++.
T Consensus        17 ~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~   50 (134)
T PRK04148         17 NKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEK   50 (134)
T ss_pred             CCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHH
Confidence            4579999999 99999999999999 7999997653

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=93.31  E-value=0.13  Score=45.94  Aligned_cols=35  Identities=23%  Similarity=0.375  Sum_probs=31.3

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      .+.++|+|||||-.|...|..|.+.|. +|+|++..
T Consensus         8 l~~k~vLVIGgG~va~~ka~~Ll~~ga-~V~VIs~~   42 (202)
T PRK06718          8 LSNKRVVIVGGGKVAGRRAITLLKYGA-HIVVISPE   42 (202)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            357899999999999999999999999 79999754

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=93.23  E-value=0.11  Score=50.82  Aligned_cols=32  Identities=28%  Similarity=0.523  Sum_probs=29.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      .+|.|||+|..|.+.|..|+++|+ +|++++++
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~   34 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA   34 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence            469999999999999999999999 79999874

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=93.22  E-value=0.13  Score=52.58  Aligned_cols=36  Identities=22%  Similarity=0.392  Sum_probs=31.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ...+|+|||||..|+-+|..|.+.|.++|+|+++++
T Consensus       272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~  307 (457)
T PRK11749        272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG  307 (457)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            357899999999999999999999975699998743

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=93.18  E-value=0.084  Score=49.31  Aligned_cols=37  Identities=22%  Similarity=0.439  Sum_probs=31.5

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHC-CCCcEEEEeeCC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAEN-GIEDILILEASD   40 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~-G~~~V~vlEa~~   40 (496)
                      +..++|.|||||-+|++.|..+.++ |..+|.|+|-.+
T Consensus        37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e   74 (446)
T KOG3851|consen   37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE   74 (446)
T ss_pred             ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence            4578999999999999999999876 443799999875

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=93.16  E-value=0.14  Score=49.20  Aligned_cols=32  Identities=25%  Similarity=0.277  Sum_probs=29.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      .+|+|||+|-.|...|+.|++.|. +|+++.++
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~   34 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRD   34 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence            469999999999999999999999 79999985

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=93.15  E-value=0.11  Score=53.35  Aligned_cols=38  Identities=16%  Similarity=0.265  Sum_probs=32.6

Q ss_pred             CCCCCCCEEEECCCHHHHH-HHHHHHHCCCCcEEEEeeCC
Q 010995            2 DSTSRSPVIIIGAGVSGIS-AGKILAENGIEDILILEASD   40 (496)
Q Consensus         2 ~~~~~~dVvIIGaGiaGL~-aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ...+.++|.|||.|-+|++ +|..|.++|+ +|++.|.+.
T Consensus         3 ~~~~~~~v~viG~G~sG~s~~a~~L~~~G~-~V~~~D~~~   41 (461)
T PRK00421          3 ELRRIKRIHFVGIGGIGMSGLAEVLLNLGY-KVSGSDLKE   41 (461)
T ss_pred             CcCCCCEEEEEEEchhhHHHHHHHHHhCCC-eEEEECCCC
Confidence            3345678999999999999 5999999999 699999764

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=92.92  E-value=0.17  Score=43.30  Aligned_cols=33  Identities=21%  Similarity=0.326  Sum_probs=30.0

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEe
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILE   37 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlE   37 (496)
                      .+.++|+|||||-.|+.-|..|.+.|. +|+|+.
T Consensus        11 l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIs   43 (157)
T PRK06719         11 LHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVS   43 (157)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEc
Confidence            356889999999999999999999999 799994

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.84  E-value=0.14  Score=52.47  Aligned_cols=34  Identities=26%  Similarity=0.436  Sum_probs=31.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .++|.|+|.|.+|+++|..|.+.|+ +|++.|.++
T Consensus        14 ~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~   47 (458)
T PRK01710         14 NKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKS   47 (458)
T ss_pred             CCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            4689999999999999999999999 699999765

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=92.81  E-value=0.22  Score=37.63  Aligned_cols=34  Identities=26%  Similarity=0.560  Sum_probs=29.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEee
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEA   38 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa   38 (496)
                      ..++++|+|+|..|..+|..|.+.|.++|.++++
T Consensus        22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            4678999999999999999999994337999977

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=92.78  E-value=0.13  Score=49.30  Aligned_cols=31  Identities=32%  Similarity=0.517  Sum_probs=28.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +|+|||+|-.|...|..|+++|+ +|+++.++
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            59999999999999999999999 79999874

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=92.72  E-value=0.2  Score=45.22  Aligned_cols=35  Identities=26%  Similarity=0.415  Sum_probs=31.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +..+|+|||+|-.|-..|..|++.|+.+++|+|..
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46789999999999999999999999779999874

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=92.64  E-value=0.15  Score=49.45  Aligned_cols=32  Identities=28%  Similarity=0.621  Sum_probs=29.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      +|.|||.|..||+.|..|++.|+ +|+.+|-..
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GH-eVv~vDid~   33 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGH-EVVCVDIDE   33 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCC-eEEEEeCCH
Confidence            68999999999999999999999 799998753

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.63  E-value=0.13  Score=49.64  Aligned_cols=48  Identities=19%  Similarity=0.348  Sum_probs=44.2

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFG   52 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~   52 (496)
                      +..+||||||-|+.--..|..-++.|. .|+=|+.++..||.-.|+..+
T Consensus         6 P~~fDvVViGTGlpESilAAAcSrsG~-sVLHlDsn~yYGg~waSfSms   53 (547)
T KOG4405|consen    6 PEEFDVVVIGTGLPESILAAACSRSGS-SVLHLDSNEYYGGNWASFSMS   53 (547)
T ss_pred             chhccEEEEcCCCcHHHHHHHhhhcCC-ceEeccCccccCCcccceeec
Confidence            678999999999999999999999999 699999999999998887765

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.61  E-value=0.16  Score=51.77  Aligned_cols=35  Identities=23%  Similarity=0.461  Sum_probs=31.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+.|+|+|+|-+|+++|..|++.|. +|++.|.+.
T Consensus         4 ~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~~   38 (447)
T PRK02472          4 QNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGKP   38 (447)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCC
Confidence            45679999999999999999999999 699998654

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.61  E-value=0.15  Score=52.65  Aligned_cols=34  Identities=26%  Similarity=0.441  Sum_probs=30.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ...+|+|+|.|.+|++++..|.+.|. +|++.|.+
T Consensus        11 ~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~   44 (488)
T PRK03369         11 PGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDD   44 (488)
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            34689999999999999999999999 69999964

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=92.53  E-value=0.16  Score=48.89  Aligned_cols=30  Identities=33%  Similarity=0.512  Sum_probs=28.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEee
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEA   38 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa   38 (496)
                      +|+|||+|..|...|..|+++|+ +|+++.+
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence            59999999999999999999999 7999986

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=92.47  E-value=0.18  Score=48.49  Aligned_cols=39  Identities=26%  Similarity=0.391  Sum_probs=33.0

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCC-CcEEEEeeC
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGI-EDILILEAS   39 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~-~~V~vlEa~   39 (496)
                      |+.+...+|+|||+|..|.+.|..|.+.|+ .+|++++++
T Consensus         1 ~~~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~   40 (307)
T PRK07502          1 MSAPLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS   40 (307)
T ss_pred             CCccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            676666789999999999999999999984 158888764

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=92.42  E-value=0.23  Score=43.34  Aligned_cols=32  Identities=28%  Similarity=0.451  Sum_probs=29.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +|+|||+|-.|-..|..|++.|+.+++++|..
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D   32 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD   32 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            58999999999999999999999679999974

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=92.42  E-value=0.29  Score=36.34  Aligned_cols=39  Identities=26%  Similarity=0.342  Sum_probs=30.0

Q ss_pred             HHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCC
Q 010995          194 LLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDG  238 (496)
Q Consensus       194 l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G  238 (496)
                      +.+.+.+.+.+      .|+++++|+.|++|+.++++++|++.||
T Consensus        42 ~~~~~~~~l~~------~gV~v~~~~~v~~i~~~~~~~~V~~~~g   80 (80)
T PF00070_consen   42 AAKILEEYLRK------RGVEVHTNTKVKEIEKDGDGVEVTLEDG   80 (80)
T ss_dssp             HHHHHHHHHHH------TTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred             HHHHHHHHHHH------CCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence            44444444444      6999999999999999988877888776

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=92.37  E-value=0.21  Score=47.87  Aligned_cols=34  Identities=29%  Similarity=0.576  Sum_probs=29.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .+|+|||+|..|.+.|+.|+.+|.-+|+++|..+
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~   35 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE   35 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            4799999999999999999998862499999844

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=92.35  E-value=0.19  Score=43.34  Aligned_cols=33  Identities=24%  Similarity=0.395  Sum_probs=28.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.+|.|||-|..|..-|..|.++|+ +|++++++
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~   33 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRS   33 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESS
T ss_pred             CCEEEEEchHHHHHHHHHHHHhcCC-eEEeeccc
Confidence            3579999999999999999999999 79999975

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=92.31  E-value=0.18  Score=48.51  Aligned_cols=33  Identities=27%  Similarity=0.552  Sum_probs=29.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC-CcEEEEeeCC
Q 010995            8 PVIIIGAGVSGISAGKILAENGI-EDILILEASD   40 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~-~~V~vlEa~~   40 (496)
                      +|+|||+|..|.++|+.|+.+|. .+|+++|.+.
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~   35 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK   35 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence            59999999999999999999993 2699999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=92.28  E-value=0.26  Score=46.92  Aligned_cols=35  Identities=23%  Similarity=0.333  Sum_probs=30.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.+.|+|+|||=+|.++|+.|++.|.++|+|+.++
T Consensus       125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~  159 (289)
T PRK12548        125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIK  159 (289)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            45679999999999999999999998459999875

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=92.19  E-value=0.25  Score=44.22  Aligned_cols=35  Identities=40%  Similarity=0.550  Sum_probs=31.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      .+.+|+|||+|-.|..+|..|++.|+.+++|+|..
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            56889999999999999999999998779999863

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=92.16  E-value=0.16  Score=52.27  Aligned_cols=34  Identities=26%  Similarity=0.484  Sum_probs=30.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      -.+|.|||+|..|..-|..|+++|+ +|+|+|+++
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~~   38 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIRA   38 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence            4569999999999999999999999 699999863

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=92.09  E-value=0.21  Score=49.69  Aligned_cols=35  Identities=17%  Similarity=0.350  Sum_probs=31.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ...+|+|+|+|..|+.+|..|+..|. +|+++|.++
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~  235 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDP  235 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCh
Confidence            45789999999999999999999999 699998754

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=92.08  E-value=0.24  Score=47.01  Aligned_cols=35  Identities=29%  Similarity=0.380  Sum_probs=31.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.++|+|||+|=+|-++++.|++.|.++|+|+.|+
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt  158 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN  158 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            45789999999999999999999998679999874

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=92.05  E-value=0.18  Score=51.52  Aligned_cols=34  Identities=26%  Similarity=0.429  Sum_probs=30.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ...+|+|||+|.+||.|+..++..|. +|+++|.+
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~  197 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTR  197 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            46789999999999999999999999 69999864

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=92.04  E-value=0.26  Score=45.45  Aligned_cols=35  Identities=31%  Similarity=0.546  Sum_probs=31.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +..+|+|||+|-.|..+|..|++.|+.+++++|..
T Consensus        23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D   57 (240)
T TIGR02355        23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD   57 (240)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            46789999999999999999999998889999864

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=91.98  E-value=0.23  Score=54.25  Aligned_cols=35  Identities=17%  Similarity=0.354  Sum_probs=30.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .++|+|||||..|+-+|..|.+.|.++|+|+++++
T Consensus       570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~  604 (752)
T PRK12778        570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS  604 (752)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            46899999999999999999999983399998754

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=91.90  E-value=0.25  Score=45.77  Aligned_cols=35  Identities=23%  Similarity=0.486  Sum_probs=31.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ++.+|+|||+|-.|..+|..|+..|+.+++|++..
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            46799999999999999999999998789999863

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=91.87  E-value=0.23  Score=48.23  Aligned_cols=31  Identities=29%  Similarity=0.536  Sum_probs=29.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +|.|||+|..|...|..|++.|+ +|++++++
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~   33 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARD   33 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            69999999999999999999999 79999874

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=91.83  E-value=0.26  Score=47.99  Aligned_cols=35  Identities=29%  Similarity=0.525  Sum_probs=31.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +..+|+|||+|-.|-.+|..|++.|+.+++|+|..
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D   57 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRD   57 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            46789999999999999999999998679999874

>PRK08328 hypothetical protein; Provisional

Probab=91.83  E-value=0.26  Score=45.12  Aligned_cols=34  Identities=26%  Similarity=0.530  Sum_probs=31.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEee
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEA   38 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa   38 (496)
                      +..+|+|||+|-.|..+|..|++.|+.+++|+|.
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~   59 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDE   59 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            4678999999999999999999999978999875

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=91.80  E-value=0.23  Score=53.12  Aligned_cols=36  Identities=28%  Similarity=0.433  Sum_probs=31.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..++|+|||||.+|+-+|..|.+.|.++|+|+++++
T Consensus       322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~  357 (652)
T PRK12814        322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT  357 (652)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            357899999999999999999999974699998754

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=91.65  E-value=0.29  Score=47.62  Aligned_cols=35  Identities=29%  Similarity=0.589  Sum_probs=31.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      .+.+|+|||+|--|-..|..|++.|+.+++|+|..
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46789999999999999999999999779999973

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=91.64  E-value=0.18  Score=50.69  Aligned_cols=33  Identities=21%  Similarity=0.468  Sum_probs=30.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      +|.|||.|..|+..|..|+++|+ +|++++.+..
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHH
Confidence            59999999999999999999999 6999998653

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=91.55  E-value=0.28  Score=46.81  Aligned_cols=35  Identities=20%  Similarity=0.417  Sum_probs=31.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ...+|+|||.|.+|..+|..|++.|. +|++++++.
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~  185 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKS  185 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            46789999999999999999999999 799998863

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=91.49  E-value=0.3  Score=46.25  Aligned_cols=35  Identities=20%  Similarity=0.407  Sum_probs=31.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.++|+|+|||=++-++++.|++.|.++|+|+.+.
T Consensus       126 ~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~  160 (283)
T PRK14027        126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD  160 (283)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            35689999999999999999999998679999764

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=91.48  E-value=0.31  Score=50.25  Aligned_cols=37  Identities=19%  Similarity=0.322  Sum_probs=30.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..++|+|||||..|+-+|..+.+.|.++|+++|..++
T Consensus       282 ~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~  318 (485)
T TIGR01317       282 KGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK  318 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence            3578999999999999998888887546999987553

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=91.46  E-value=0.21  Score=44.32  Aligned_cols=35  Identities=26%  Similarity=0.555  Sum_probs=31.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+.|.|||||..|-.-|..-+..|+ +|.|++++.
T Consensus        10 ~~~~V~ivGaG~MGSGIAQv~a~sg~-~V~l~d~~~   44 (298)
T KOG2304|consen   10 EIKNVAIVGAGQMGSGIAQVAATSGL-NVWLVDANE   44 (298)
T ss_pred             cccceEEEcccccchhHHHHHHhcCC-ceEEecCCH
Confidence            46789999999999999999999999 799999854

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=91.44  E-value=0.19  Score=54.17  Aligned_cols=33  Identities=18%  Similarity=0.414  Sum_probs=30.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .+|+|||||..|-.-|+.++.+|+ +|+++|.++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~  346 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQ  346 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCH
Confidence            579999999999999999999999 799999864

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=91.42  E-value=0.3  Score=44.68  Aligned_cols=35  Identities=26%  Similarity=0.508  Sum_probs=31.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      .+.+|+|||+|-.|-..|..|++.|+.+++|+|..
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D   54 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD   54 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            46789999999999999999999999889999863

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=91.40  E-value=0.31  Score=43.47  Aligned_cols=35  Identities=26%  Similarity=0.398  Sum_probs=31.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ++.+|+|||+|--|...|..|+..|+.+++++|..
T Consensus        20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            46789999999999999999999999789999864

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.34  E-value=0.26  Score=50.58  Aligned_cols=34  Identities=32%  Similarity=0.582  Sum_probs=30.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      .+++|.|+|.|.+|+++|..|.+.|. +|++.++.
T Consensus        14 ~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~   47 (473)
T PRK00141         14 LSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDN   47 (473)
T ss_pred             cCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            34679999999999999999999999 79999964

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=91.33  E-value=0.32  Score=43.38  Aligned_cols=35  Identities=37%  Similarity=0.563  Sum_probs=31.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ++.+|+|||+|--|..+|..|+..|+.+++|+|-.
T Consensus        18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d   52 (198)
T cd01485          18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR   52 (198)
T ss_pred             hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            46789999999999999999999999789999864

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.30  E-value=0.33  Score=46.77  Aligned_cols=34  Identities=21%  Similarity=0.385  Sum_probs=30.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|.|||+|..|.+.|..|+++|+ +|+++.++.
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~~   37 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRRS   37 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            4579999999999999999999999 799998764

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.28  E-value=0.32  Score=47.29  Aligned_cols=33  Identities=21%  Similarity=0.390  Sum_probs=30.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.+|.|||+|..|...|..|+++|+ +|++++++
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~   36 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGV-PVRLWARR   36 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            3479999999999999999999999 79999874

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=91.27  E-value=0.39  Score=46.30  Aligned_cols=40  Identities=25%  Similarity=0.527  Sum_probs=33.6

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCC-cEEEEeeCC
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGIE-DILILEASD   40 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~-~V~vlEa~~   40 (496)
                      |......+|+|||+|-.|-++|+.|+..|.- ++.|+|.+.
T Consensus         1 ~~~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~   41 (315)
T PRK00066          1 MMKKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK   41 (315)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            4555677999999999999999999999873 599999743

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.25  E-value=0.29  Score=49.75  Aligned_cols=39  Identities=23%  Similarity=0.451  Sum_probs=33.1

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      |.....++|.|||-|-+|.+++..|+++|+ +|++.|...
T Consensus         1 ~~~~~~~~i~v~G~G~sG~s~~~~l~~~G~-~v~~~D~~~   39 (438)
T PRK03806          1 MADYQGKKVVIIGLGLTGLSCVDFFLARGV-TPRVIDTRI   39 (438)
T ss_pred             CcccCCCEEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCC
Confidence            333346789999999999999999999999 799999754

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=91.06  E-value=0.37  Score=40.40  Aligned_cols=32  Identities=25%  Similarity=0.458  Sum_probs=29.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +|+|||+|-.|...|..|++.|+.+++|++..
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            58999999999999999999999779999864

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=91.01  E-value=0.29  Score=46.47  Aligned_cols=33  Identities=33%  Similarity=0.552  Sum_probs=30.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      -.+|.|||||..|-.-|+.++..|+ +|+++|.+
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~-~V~l~D~~   35 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGY-DVVLKDIS   35 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCC-ceEEEeCC
Confidence            4679999999999999999999889 79999986

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=91.01  E-value=0.3  Score=50.43  Aligned_cols=32  Identities=25%  Similarity=0.365  Sum_probs=29.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      .+|.|||+|..|.+-|..|+++|+ +|+|++.+
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~   36 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPH   36 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            469999999999999999999999 79999875

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.99  E-value=0.27  Score=50.86  Aligned_cols=35  Identities=20%  Similarity=0.469  Sum_probs=31.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..++|.|||.|.+|+++|..|.++|+ +|++.|...
T Consensus         6 ~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~~   40 (498)
T PRK02006          6 QGPMVLVLGLGESGLAMARWCARHGA-RLRVADTRE   40 (498)
T ss_pred             CCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCCC
Confidence            35679999999999999999999999 699999754

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=90.98  E-value=0.41  Score=42.77  Aligned_cols=35  Identities=20%  Similarity=0.377  Sum_probs=31.2

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      .+.++|+|+|.|-.|..+|..|.+.|. +|++.+.+
T Consensus        26 l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~   60 (200)
T cd01075          26 LEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN   60 (200)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            345789999999999999999999999 69998865

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=90.94  E-value=0.27  Score=53.03  Aligned_cols=34  Identities=21%  Similarity=0.346  Sum_probs=31.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      -++|+|||||..|-.-|+.++.+|+ +|+++|.+.
T Consensus       313 i~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~  346 (714)
T TIGR02437       313 VKQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQ  346 (714)
T ss_pred             cceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCH
Confidence            3579999999999999999999999 799999864

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=90.88  E-value=0.41  Score=45.00  Aligned_cols=35  Identities=20%  Similarity=0.271  Sum_probs=30.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .++|+|+|||=++.++++.|++.|.++|+|+.+..
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~  156 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNE  156 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            35799999999999999999999985699998753

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=90.76  E-value=0.35  Score=49.65  Aligned_cols=40  Identities=13%  Similarity=0.170  Sum_probs=31.8

Q ss_pred             CCCCcEEEccccccCcCCccchHHHHHHHHHHHHHHHHHhcc
Q 010995          403 APVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKD  444 (496)
Q Consensus       403 ~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~~~  444 (496)
                      +..++||.+||.+..  +..+..|+..|..||..|.+.+.+.
T Consensus       428 Ts~~gVfa~GD~~~g--~~~~~~Av~~G~~AA~~i~~~L~g~  467 (471)
T PRK12810        428 TSNPKVFAAGDMRRG--QSLVVWAIAEGRQAARAIDAYLMGS  467 (471)
T ss_pred             CCCCCEEEccccCCC--chhHHHHHHHHHHHHHHHHHHHhcC
Confidence            356799999998864  2357789999999999999988753

>PRK08223 hypothetical protein; Validated

Probab=90.68  E-value=0.39  Score=45.10  Aligned_cols=35  Identities=31%  Similarity=0.238  Sum_probs=31.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ++.+|+|||+|--|-.+|..|+..|+.+++|+|..
T Consensus        26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D   60 (287)
T PRK08223         26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD   60 (287)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            46789999999999999999999999889998863

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=90.65  E-value=0.32  Score=49.68  Aligned_cols=34  Identities=26%  Similarity=0.421  Sum_probs=30.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ...+|+|+|+|..|+.++..+...|. +|+++|.+
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~  196 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTR  196 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            35789999999999999999999999 69999864

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=90.60  E-value=0.38  Score=45.69  Aligned_cols=35  Identities=20%  Similarity=0.441  Sum_probs=31.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..++|+|||.|-.|.+.|..|+..|. +|++++++.
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~  184 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSS  184 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            45789999999999999999999999 799999864

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.49  E-value=0.33  Score=49.73  Aligned_cols=34  Identities=21%  Similarity=0.512  Sum_probs=30.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ..++|.|||.|-+|+++|..|.+.|+ +|++.|..
T Consensus         8 ~~~~i~viG~G~~G~~~a~~l~~~G~-~v~~~D~~   41 (460)
T PRK01390          8 AGKTVAVFGLGGSGLATARALVAGGA-EVIAWDDN   41 (460)
T ss_pred             CCCEEEEEeecHhHHHHHHHHHHCCC-EEEEECCC
Confidence            34679999999999999999999999 69999854

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=90.45  E-value=0.51  Score=37.83  Aligned_cols=31  Identities=35%  Similarity=0.653  Sum_probs=27.7

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            9 VIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         9 VvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      |+|+|.|-.|...|..|.+.+. +|+++|..+
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~d~   31 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDRDP   31 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTS-EEEEEESSH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCC-EEEEEECCc
Confidence            7999999999999999999887 699999864

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=90.41  E-value=0.33  Score=41.26  Aligned_cols=35  Identities=23%  Similarity=0.373  Sum_probs=27.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+.|+|+|=|..|-.+|..|+..|. +|+|.|..+
T Consensus        22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DP   56 (162)
T PF00670_consen   22 AGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDP   56 (162)
T ss_dssp             TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSH
T ss_pred             CCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECCh
Confidence            35789999999999999999999999 799999754

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=90.31  E-value=0.41  Score=49.08  Aligned_cols=35  Identities=14%  Similarity=0.269  Sum_probs=30.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .++|+|||+|..|+-+|..+.+.|.++|+|+++++
T Consensus       282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~  316 (467)
T TIGR01318       282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD  316 (467)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence            47899999999999999999999963699998754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=90.31  E-value=0.38  Score=53.55  Aligned_cols=34  Identities=21%  Similarity=0.352  Sum_probs=31.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .++|+|||||-.|+-||..+.+.|. +|+++.+++
T Consensus       447 Gk~VvVIGGG~tA~D~A~ta~R~Ga-~Vtlv~rr~  480 (944)
T PRK12779        447 GKEVFVIGGGNTAMDAARTAKRLGG-NVTIVYRRT  480 (944)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-EEEEEEecC
Confidence            4789999999999999999999999 699998764

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=90.21  E-value=0.29  Score=52.97  Aligned_cols=33  Identities=18%  Similarity=0.534  Sum_probs=30.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .+|.|||||..|..-|+.++.+|+ +|+++|.++
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~  368 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATP  368 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCH
Confidence            579999999999999999999999 799999764

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=90.20  E-value=0.49  Score=44.77  Aligned_cols=35  Identities=23%  Similarity=0.379  Sum_probs=30.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ..++|+|+|+|-+|.++++.|++.|..+|+|+.++
T Consensus       122 ~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~  156 (278)
T PRK00258        122 KGKRILILGAGGAARAVILPLLDLGVAEITIVNRT  156 (278)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            45789999999999999999999994479999875

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=90.20  E-value=0.44  Score=46.59  Aligned_cols=35  Identities=26%  Similarity=0.651  Sum_probs=31.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCC--cEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIE--DILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~--~V~vlEa~   39 (496)
                      +..+|+|.|||-||+++|..|...|.+  +|.++|+.
T Consensus       198 ~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~  234 (432)
T COG0281         198 KDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRK  234 (432)
T ss_pred             cceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecC
Confidence            456899999999999999999999986  78888875

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=90.19  E-value=0.38  Score=46.75  Aligned_cols=31  Identities=23%  Similarity=0.371  Sum_probs=28.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +|.|||||-.|.+-|..|+++|+ +|+++.++
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~   32 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRN   32 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCC-eEEEEecC
Confidence            49999999999999999999999 79999874

>TIGR00936 ahcY adenosylhomocysteinase

Probab=90.14  E-value=0.42  Score=47.46  Aligned_cols=35  Identities=17%  Similarity=0.290  Sum_probs=31.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+.|+|||.|..|..+|..|+..|. +|+|+|..+
T Consensus       194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp  228 (406)
T TIGR00936       194 AGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDP  228 (406)
T ss_pred             CcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCCh
Confidence            46789999999999999999999999 699999754

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=90.13  E-value=0.49  Score=43.25  Aligned_cols=35  Identities=23%  Similarity=0.444  Sum_probs=31.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ++.+|+|||.|-.|-.+|..|++.|+.+++|+|..
T Consensus        10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D   44 (231)
T cd00755          10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD   44 (231)
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            46789999999999999999999999789999863

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=89.99  E-value=0.52  Score=45.31  Aligned_cols=36  Identities=17%  Similarity=0.563  Sum_probs=31.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCC-cEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIE-DILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~-~V~vlEa~~   40 (496)
                      ++.+|+|||+|-.|-++|+.|+..|.. ++.|+|...
T Consensus         2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~   38 (312)
T cd05293           2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE   38 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            466999999999999999999998863 599998754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=89.89  E-value=0.18  Score=48.49  Aligned_cols=38  Identities=32%  Similarity=0.640  Sum_probs=34.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      .++.+|||||+.||--+---.+.|- +||++|.-+.+||
T Consensus       211 Pk~~~viG~G~IGLE~gsV~~rLGs-eVT~VEf~~~i~~  248 (506)
T KOG1335|consen  211 PKKLTVIGAGYIGLEMGSVWSRLGS-EVTVVEFLDQIGG  248 (506)
T ss_pred             cceEEEEcCceeeeehhhHHHhcCC-eEEEEEehhhhcc
Confidence            4689999999999999999999999 6999999888776

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=89.87  E-value=0.36  Score=49.29  Aligned_cols=34  Identities=21%  Similarity=0.302  Sum_probs=30.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.++|+|||+|.+|+-.|..|++.+. +|+++.++
T Consensus       203 ~gk~VvVVG~G~Sg~diA~~L~~~a~-~V~l~~r~  236 (461)
T PLN02172        203 KNEVVVVIGNFASGADISRDIAKVAK-EVHIASRA  236 (461)
T ss_pred             CCCEEEEECCCcCHHHHHHHHHHhCC-eEEEEEee
Confidence            45789999999999999999999998 69998764

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=89.84  E-value=0.4  Score=45.45  Aligned_cols=31  Identities=26%  Similarity=0.278  Sum_probs=28.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +|.|||.|..|.+.|..|+++|+ +|++++++
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~   32 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRR   32 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCC-EEEEEECC
Confidence            59999999999999999999999 69999874

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.83  E-value=0.42  Score=48.24  Aligned_cols=34  Identities=29%  Similarity=0.550  Sum_probs=30.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|.|||-|.+|.++|..|.++|+ +|++.|.+.
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~-~V~g~D~~~   36 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGV-YVIGVDKSL   36 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            3579999999999999999999999 699999653

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=89.77  E-value=0.54  Score=44.64  Aligned_cols=35  Identities=20%  Similarity=0.417  Sum_probs=31.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.++|+|||||=++-+.|+.|++.|.++|+|+.++
T Consensus       123 ~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt  157 (288)
T PRK12749        123 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR  157 (288)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            45689999999999999999999998779999876

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=89.76  E-value=0.55  Score=44.21  Aligned_cols=34  Identities=29%  Similarity=0.453  Sum_probs=30.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      .++|+|+|||=++-++++.|++.|.++|+|+-|.
T Consensus       126 ~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt  159 (283)
T COG0169         126 GKRVLILGAGGAARAVAFALAEAGAKRITVVNRT  159 (283)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            4679999999999999999999997579999874

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=89.76  E-value=0.47  Score=45.65  Aligned_cols=33  Identities=33%  Similarity=0.632  Sum_probs=29.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCC-cEEEEeeCC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIE-DILILEASD   40 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~-~V~vlEa~~   40 (496)
                      +|+|||+|-.|.+.|+.|+..|.. +|+|++...
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~   35 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE   35 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            699999999999999999999952 699999854

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=89.70  E-value=0.41  Score=51.59  Aligned_cols=34  Identities=26%  Similarity=0.385  Sum_probs=30.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHH-HCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILA-ENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~-~~G~~~V~vlEa~~   40 (496)
                      .++|+|||||..|..-|..++ ++|+ +|+++|.++
T Consensus       304 i~~v~ViGaG~mG~~iA~~~a~~~G~-~V~l~d~~~  338 (699)
T TIGR02440       304 IKKVGILGGGLMGGGIASVTATKAGI-PVRIKDINP  338 (699)
T ss_pred             ccEEEEECCcHHHHHHHHHHHHHcCC-eEEEEeCCH
Confidence            357999999999999999998 5899 799999864

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK06223 malate dehydrogenase; Reviewed

Probab=89.70  E-value=0.5  Score=45.46  Aligned_cols=35  Identities=29%  Similarity=0.567  Sum_probs=29.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      +.+|+|||||..|.+.|+.|+..|..+|.++|..+
T Consensus         2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~   36 (307)
T PRK06223          2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVE   36 (307)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence            35899999999999999999998742599999754

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=89.68  E-value=0.36  Score=47.98  Aligned_cols=31  Identities=26%  Similarity=0.532  Sum_probs=27.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      +|.|||.|..|+..|..|+. |+ +|+++|.+.
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~-~VigvD~d~   32 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NH-EVVALDILP   32 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CC-cEEEEECCH
Confidence            49999999999999988885 99 799999864

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=89.63  E-value=0.51  Score=44.48  Aligned_cols=33  Identities=24%  Similarity=0.382  Sum_probs=30.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      .++|+|+|+|-+|.+.|+.|++.|. +|+|+.++
T Consensus       117 ~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~  149 (270)
T TIGR00507       117 NQRVLIIGAGGAARAVALPLLKADC-NVIIANRT  149 (270)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5679999999999999999999999 79999875

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PTZ00117 malate dehydrogenase; Provisional

Probab=89.51  E-value=0.58  Score=45.25  Aligned_cols=36  Identities=19%  Similarity=0.486  Sum_probs=31.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ++.+|+|||||-.|-+.|+.|+..|..++.|+|..+
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~   39 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK   39 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence            567899999999999999999999943699999754

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=89.26  E-value=0.46  Score=48.41  Aligned_cols=32  Identities=25%  Similarity=0.407  Sum_probs=28.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC--CCcEEEEeeCC
Q 010995            8 PVIIIGAGVSGISAGKILAENG--IEDILILEASD   40 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G--~~~V~vlEa~~   40 (496)
                      +|+|||+|..||..|..|+++|  + +|+.+|...
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~~g~g~-~V~gvD~~~   36 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIALKCPDI-EVVVVDISV   36 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCC-eEEEEECCH
Confidence            5999999999999999999985  7 699998754

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=89.21  E-value=0.6  Score=46.02  Aligned_cols=35  Identities=31%  Similarity=0.522  Sum_probs=31.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +..+|+|||+|-.|..+|..|+..|+.+++|+|..
T Consensus        40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            46789999999999999999999998789999863

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=89.09  E-value=0.44  Score=51.44  Aligned_cols=34  Identities=21%  Similarity=0.354  Sum_probs=30.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHH-HCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILA-ENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~-~~G~~~V~vlEa~~   40 (496)
                      -.+|+|||||..|-.-|..++ ..|+ +|+++|.+.
T Consensus       309 i~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~  343 (708)
T PRK11154        309 VNKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINP  343 (708)
T ss_pred             ccEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCH
Confidence            357999999999999999999 8899 799999753

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.06  E-value=0.48  Score=48.32  Aligned_cols=34  Identities=26%  Similarity=0.582  Sum_probs=30.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .--|+|||.|-+|.++|..|.+.|+ +|++.|..+
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~~   39 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFLARQGI-PFAVMDSRE   39 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHHHhCCC-eEEEEeCCC
Confidence            4569999999999999999999999 699999754

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=88.99  E-value=0.83  Score=38.70  Aligned_cols=34  Identities=18%  Similarity=0.389  Sum_probs=28.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.+.|+|||-|--|.+-|..|.+.|+ +|+|-++.
T Consensus         3 ~~k~IAViGyGsQG~a~AlNLrDSG~-~V~Vglr~   36 (165)
T PF07991_consen    3 KGKTIAVIGYGSQGHAHALNLRDSGV-NVIVGLRE   36 (165)
T ss_dssp             CTSEEEEES-SHHHHHHHHHHHHCC--EEEEEE-T
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCC-CEEEEecC
Confidence            46789999999999999999999999 79998864

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=88.88  E-value=0.37  Score=45.42  Aligned_cols=35  Identities=26%  Similarity=0.447  Sum_probs=32.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      .+.+|+|||+|-.|..+|..|+..|+++|+|+|-.
T Consensus        18 ~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d   52 (286)
T cd01491          18 QKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTK   52 (286)
T ss_pred             hcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            46789999999999999999999999889999864

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=88.85  E-value=0.59  Score=45.01  Aligned_cols=35  Identities=37%  Similarity=0.542  Sum_probs=30.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ...+|+|||+|-.|..+|..|.+.|..+|+|++++
T Consensus       177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~  211 (311)
T cd05213         177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRT  211 (311)
T ss_pred             cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            46789999999999999999998775479999875

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=88.82  E-value=0.3  Score=48.32  Aligned_cols=39  Identities=26%  Similarity=0.298  Sum_probs=31.7

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCc-EEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGC-VYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~-~~~ad~VI~A~p~~  253 (496)
                      .|++|+++++|++|+.+    .|++.+|+ ++.++.+|.|+...
T Consensus       222 ~GV~v~l~~~Vt~v~~~----~v~~~~g~~~I~~~tvvWaaGv~  261 (405)
T COG1252         222 LGVEVLLGTPVTEVTPD----GVTLKDGEEEIPADTVVWAAGVR  261 (405)
T ss_pred             CCCEEEcCCceEEECCC----cEEEccCCeeEecCEEEEcCCCc
Confidence            69999999999999865    35555665 59999999998654

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=88.82  E-value=0.58  Score=46.35  Aligned_cols=35  Identities=34%  Similarity=0.543  Sum_probs=31.4

Q ss_pred             CCCCCEEEEC-CCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            4 TSRSPVIIIG-AGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         4 ~~~~dVvIIG-aGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +...+|+||| .|..|-+.|..|.++|+ +|++++++
T Consensus        96 ~~~~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~  131 (374)
T PRK11199         96 PDLRPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQD  131 (374)
T ss_pred             cccceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCC
Confidence            3457899999 89999999999999999 69999975

>PRK07454 short chain dehydrogenase; Provisional

Probab=88.81  E-value=0.74  Score=42.32  Aligned_cols=39  Identities=26%  Similarity=0.353  Sum_probs=33.4

Q ss_pred             CCCCCCCCEEEECC-CHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            1 MDSTSRSPVIIIGA-GVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         1 m~~~~~~dVvIIGa-GiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      |...+++.++|.|| |-.|...|.+|.++|. +|+++.++.
T Consensus         1 ~~~~~~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~   40 (241)
T PRK07454          1 MSLNSMPRALITGASSGIGKATALAFAKAGW-DLALVARSQ   40 (241)
T ss_pred             CCCCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            66666788999996 9999999999999999 699998753

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=88.77  E-value=0.6  Score=46.67  Aligned_cols=35  Identities=20%  Similarity=0.340  Sum_probs=31.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+.|+|||.|..|..+|..|...|. +|+++|..+
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp  245 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP  245 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence            46789999999999999999999999 799999754

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.75  E-value=0.66  Score=47.18  Aligned_cols=39  Identities=23%  Similarity=0.515  Sum_probs=32.9

Q ss_pred             CCCCCC-CCEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeCC
Q 010995            1 MDSTSR-SPVIIIGAGVSGISAGKILAEN--GIEDILILEASD   40 (496)
Q Consensus         1 m~~~~~-~dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~~   40 (496)
                      |+.... ++|.|||.|-+|.+++..|.+.  |+ +|++.|.++
T Consensus         1 ~~~~~~~~~v~viG~G~sG~s~~~~l~~~~~~~-~v~~~D~~~   42 (438)
T PRK04663          1 MDRWQGIKNVVVVGLGITGLSVVKHLRKYQPQL-TVKVIDTRE   42 (438)
T ss_pred             CCcccCCceEEEEeccHHHHHHHHHHHhcCCCC-eEEEEeCCC
Confidence            555455 7799999999999999999998  58 699999754

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=88.64  E-value=0.7  Score=41.05  Aligned_cols=34  Identities=21%  Similarity=0.487  Sum_probs=29.7

Q ss_pred             CCCCEEEECC-CHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGA-GVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGa-GiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +..+|+|+|| |-.|..+|..|++.|. +|+++.++
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~   61 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRD   61 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            4578999997 9999999999999998 79999653

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=88.58  E-value=0.82  Score=38.25  Aligned_cols=33  Identities=33%  Similarity=0.672  Sum_probs=28.8

Q ss_pred             CEEEECC-CHHHHHHHHHHHHCCCC-cEEEEeeCC
Q 010995            8 PVIIIGA-GVSGISAGKILAENGIE-DILILEASD   40 (496)
Q Consensus         8 dVvIIGa-GiaGL~aA~~L~~~G~~-~V~vlEa~~   40 (496)
                      +|+|||| |-.|-+.|+.|...+.- ++.|++..+
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~   36 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE   36 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence            6999999 99999999999999853 688998753

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK07774 short chain dehydrogenase; Provisional

Probab=88.55  E-value=0.76  Score=42.48  Aligned_cols=38  Identities=24%  Similarity=0.402  Sum_probs=32.4

Q ss_pred             CCCCCCCCEEEECC-CHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            1 MDSTSRSPVIIIGA-GVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         1 m~~~~~~dVvIIGa-GiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      |...+.+.|+|.|| |-.|...|.+|+++|+ +|+++.+.
T Consensus         1 ~~~~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~   39 (250)
T PRK07774          1 MGRFDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADIN   39 (250)
T ss_pred             CcccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            44455678999997 9999999999999999 69999764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	496
1b37_A	472	A 30 Angstrom U-Shaped Catalytic Tunnel In The Crys		1e-118
3kpf_A	478	X-Ray Structure Of The Mutant Lys300met Of Polyamin		1e-118
4fwe_A	796	Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup		3e-23
4gu1_A	784	Crystal Structure Of Lsd2 Length = 784		3e-23
4gur_A	776	Crystal Structure Of Lsd2-npac With H3 In Space Gro		4e-23
2hko_A	664	Crystal Structure Of Lsd1 Length = 664		4e-19
2ejr_A	662	Lsd1-Tranylcypromine Complex Length = 662		1e-18
2h94_A	664	Crystal Structure And Mechanism Of Human Lysine-Spe		1e-18
2v1d_A	730	Structural Basis Of Lsd1-Corest Selectivity In Hist		1e-18
2dw4_A	660	Crystal Structure Of Human Lsd1 At 2.3 A Resolution		1e-18
2xaf_A	852	Crystal Structure Of Lsd1-Corest In Complex With Pa		1e-18
2iw5_A	666	Structural Basis For Corest-dependent Demethylation		1e-18
2x0l_A	734	Crystal Structure Of A Neuro-Specific Splicing Vari		2e-18
2xfo_A	520	Tranylcypromine-Inhibited Human Monoamine Oxidase B		4e-10
2bk4_A	520	Human Monoamine Oxidase B: I199f Mutant In Complex		4e-10
2xfu_A	519	Human Monoamine Oxidase B With Tranylcypromine Leng		4e-10
1gos_A	520	Human Monoamine Oxidase B Length = 520		5e-10
2c73_A	520	Functional Role Of The Aromatic Cage In Human Monoa		1e-09
2c76_A	520	Functional Role Of The Aromatic Cage In Human Monoa		1e-09
3kve_A	486	Structure Of Native L-Amino Acid Oxidase From Viper		1e-09
2c72_A	520	Functional Role Of The Aromatic Cage In Human Monoa		1e-09
2z5x_A	513	Crystal Structure Of Human Monoamine Oxidase A With		3e-09
2bxr_A	527	Human Monoamine Oxidase A In Complex With Clorgylin		3e-09
3zyx_A	519	Crystal Structure Of Human Monoamine Oxidase B In C		3e-09
2z5y_A	513	Crystal Structure Of Human Monoamine Oxidase A (G11		3e-09
2c75_A	520	Functional Role Of The Aromatic Cage In Human Monoa		3e-09
4ech_A	516	Yeast Polyamine Oxidase Fms1, H67q Mutant Length =		4e-08
1z6l_A	516	Crystal Structure Of Fms1 In Complex With Its Subst		5e-08
1yy5_A	513	Crystal Structure Of Fms1, A Polyamine Oxidase From		5e-08
1o5w_A	534	The Structure Basis Of Specific Recognitions For Su		1e-07
4e0v_A	497	Structure Of L-Amino Acid Oxidase From The B. Jarar		4e-07
2vvm_A	495	The Structure Of Mao-N-D5, A Variant Of Monoamine O		1e-05
1reo_A	486	L-Amino Acid Oxidase From Agkistrodon Halys Pallas		6e-05
2vvl_A	495	The Structure Of Mao-N-D3, A Variant Of Monoamine O		7e-05
2yg7_A	453	Structure-Based Redesign Of Cofactor Binding In Put		8e-05
2vvl_G	495	The Structure Of Mao-N-D3, A Variant Of Monoamine O		8e-05
4gdp_A	516	Yeast Polyamine Oxidase Fms1, N195a Mutant Length =		1e-04
1rsg_A	516	Crystal Structure Of The Polyamine Oxidase Fms1 Fro		1e-04
2yg5_A	453	Structure-Based Redesign Of Cofactor Binding In Put		3e-04
2yg3_A	453	Structure-Based Redesign Of Cofactor Binding In Put		3e-04
2yg6_A	453	Structure-Based Redesign Of Cofactor Binding In Put		3e-04

>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal Structure Of Polyamine Oxidase Length = 472

Iteration: 1
 Score =  423 bits (1087), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/440 (47%), Positives = 292/440 (66%), Gaps = 19/440 (4%)
Query: 23  KILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKS- 81
           K L+E GI D+LILEA+D IGGR+    F G++VELGA W+ GV G + NP+W + + + 
Sbjct: 21  KRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTL 80
Query: 82  GLRTCFSDYTNARYNIYDRSGKIIPSGVA------ADSYKKAVESAIANLKNLEATNSNI 135
            LR   SD+     N+Y   G +            ADS ++  E   A L      + +I
Sbjct: 81  KLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKLSATLHASGRDDMSI 140
Query: 136 GEVIKAATELPSSPKTPLELAIDFILHDFEMAE---------VEPISTYVDFGEREFLVA 186
             + +     P+ P TP+++ +D+   D+E AE           P++T+ DFG+  + VA
Sbjct: 141 LAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVPLATFSDFGDDVYFVA 200
Query: 187 DERGYAHLLYKMAEEFLSTSD--GKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEAN 244
           D+RGY  ++Y +A ++L T D  GKI+D RL+LNKVVRE+++S  GVTVKTED  VY A+
Sbjct: 201 DQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSAD 260
Query: 245 YVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFI 304
           YV++SAS+GVLQSDLI FKP LP WK  AI + D+ VYTKIFLKFP KFWP   G+EFF+
Sbjct: 261 YVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFL 320
Query: 305 YAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMF-GP 363
           YA  RRGYY  WQ  E  YP +N+L+VT+T+ ES+R+E Q DE+T  E M+VL+ MF G 
Sbjct: 321 YASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGK 380
Query: 364 DIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYV 423
           D+P+ATDILVPRWW++RF +G++SN+P+  +    + +RAPV  ++FTGEHTSE +NGYV
Sbjct: 381 DVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYV 440
Query: 424 HGGYLAGIDTGKAVVEKIRK 443
           HG YL+GID+ + ++   +K
Sbjct: 441 HGAYLSGIDSAEILINCAQK 460

>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine Oxidase From Zea Mays Length = 478

Iteration: 1
 Score =  421 bits (1081), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/440 (47%), Positives = 291/440 (66%), Gaps = 19/440 (4%)
Query: 23  KILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKS- 81
           K L+E GI D+LILEA+D IGGR+    F G++VELGA W+ GV G + NP+W + + + 
Sbjct: 21  KRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTL 80
Query: 82  GLRTCFSDYTNARYNIYDRSGKIIPSGVA------ADSYKKAVESAIANLKNLEATNSNI 135
            LR   SD+     N+Y   G +            ADS ++  E   A L      + +I
Sbjct: 81  KLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKLSATLHASGRDDMSI 140
Query: 136 GEVIKAATELPSSPKTPLELAIDFILHDFEMAE---------VEPISTYVDFGEREFLVA 186
             + +     P+ P TP+++ +D+   D+E AE           P++T+ DFG+  + VA
Sbjct: 141 LAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVPLATFSDFGDDVYFVA 200
Query: 187 DERGYAHLLYKMAEEFLSTSD--GKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEAN 244
           D+RGY  ++Y +A ++L T D  GKI+D RL+LNKVVRE+++S  GVTVKTED  VY A+
Sbjct: 201 DQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSAD 260
Query: 245 YVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFI 304
           YV++SAS+GVLQSDLI FKP LP WK  AI + D+ VYT IFLKFP KFWP   G+EFF+
Sbjct: 261 YVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTMIFLKFPRKFWPEGKGREFFL 320
Query: 305 YAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMF-GP 363
           YA  RRGYY  WQ  E  YP +N+L+VT+T+ ES+R+E Q DE+T  E M+VL+ MF G 
Sbjct: 321 YASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGK 380
Query: 364 DIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYV 423
           D+P+ATDILVPRWW++RF +G++SN+P+  +    + +RAPV  ++FTGEHTSE +NGYV
Sbjct: 381 DVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYV 440
Query: 424 HGGYLAGIDTGKAVVEKIRK 443
           HG YL+GID+ + ++   +K
Sbjct: 441 HGAYLSGIDSAEILINCAQK 460

>pdb|4FWE|A Chain A, Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup Of C2221 At 2.13a Length = 796

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 189/426 (44%), Gaps = 47/426 (11%)
Query: 33  ILILEASDRIGGRVRNEK-FGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYT 91
           + +LEA DRIGGRV ++K F GV+V  GA     V G  +NPV  +  + G+        
Sbjct: 382 VTVLEAKDRIGGRVWDDKSFKGVTVGRGA---QIVNGCINNPVALMCEQLGISM---HKF 435
Query: 92  NARYNIYDRSGKIIPSGV--AADSYKKAVESAIANLKNLEAT------NSNIGEVIKAAT 143
             R ++    G+I    +    D +  A+   ++  +  +           I E+ KA  
Sbjct: 436 GERCDLIQEGGRITDPTIDKRMDFHFNALLDVVSEWRKDKTQLQDVPLGEKIEEIYKAFI 495
Query: 144 ELPSSPKTPLE-LAIDFILHDFEMA---EVEPIST--------YVDFGEREFLVADERGY 191
           +      + LE   + F L + E A    +  +S         +  F     L+    GY
Sbjct: 496 KESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTP--GY 553
Query: 192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSAS 251
           + ++ K+AE          LD  ++L   V+ + +S + V V T DG  Y A  V+++  
Sbjct: 554 SVIIEKLAEG---------LD--IQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVP 602
Query: 252 IGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCS-PGKEFFIY---AH 307
           + +LQ   I F PPL + K +AI      +  KI L+FP +FW     G +FF +   + 
Sbjct: 603 LALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSA 662
Query: 308 ERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFG-PDIP 366
            +RG +  +  M+     S +L+  +       V    D++ L++ M  L+++F   ++P
Sbjct: 663 SKRGLFAVFYDMDPQKKHS-VLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVP 721
Query: 367 NATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAG-IFFTGEHTSERFNGYVHG 425
           + T   V RW  + + + +YS        +  + I   + G +FF GE T+  F   V G
Sbjct: 722 DPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTG 781
Query: 426 GYLAGI 431
            YL+G+
Sbjct: 782 AYLSGV 787

>pdb|4GU1|A Chain A, Crystal Structure Of Lsd2 Length = 784

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 189/426 (44%), Gaps = 47/426 (11%)
Query: 33  ILILEASDRIGGRVRNEK-FGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYT 91
           + +LEA DRIGGRV ++K F GV+V  GA     V G  +NPV  +  + G+        
Sbjct: 370 VTVLEAKDRIGGRVWDDKSFKGVTVGRGA---QIVNGCINNPVALMCEQLGISM---HKF 423
Query: 92  NARYNIYDRSGKIIPSGV--AADSYKKAVESAIANLKNLEAT------NSNIGEVIKAAT 143
             R ++    G+I    +    D +  A+   ++  +  +           I E+ KA  
Sbjct: 424 GERCDLIQEGGRITDPTIDKRMDFHFNALLDVVSEWRKDKTQLQDVPLGEKIEEIYKAFI 483
Query: 144 ELPSSPKTPLE-LAIDFILHDFEMA---EVEPIST--------YVDFGEREFLVADERGY 191
           +      + LE   + F L + E A    +  +S         +  F     L+    GY
Sbjct: 484 KESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTP--GY 541
Query: 192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSAS 251
           + ++ K+AE          LD  ++L   V+ + +S + V V T DG  Y A  V+++  
Sbjct: 542 SVIIEKLAEG---------LD--IQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVP 590
Query: 252 IGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCS-PGKEFFIY---AH 307
           + +LQ   I F PPL + K +AI      +  KI L+FP +FW     G +FF +   + 
Sbjct: 591 LALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSA 650
Query: 308 ERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFG-PDIP 366
            +RG +  +  M+     S +L+  +       V    D++ L++ M  L+++F   ++P
Sbjct: 651 SKRGLFAVFYDMDPQKKHS-VLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVP 709
Query: 367 NATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAG-IFFTGEHTSERFNGYVHG 425
           + T   V RW  + + + +YS        +  + I   + G +FF GE T+  F   V G
Sbjct: 710 DPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTG 769
Query: 426 GYLAGI 431
            YL+G+
Sbjct: 770 AYLSGV 775

>pdb|4GUR|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group P21 Length = 776

Iteration: 1
 Score =  105 bits (263), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 189/426 (44%), Gaps = 47/426 (11%)
Query: 33  ILILEASDRIGGRVRNEK-FGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYT 91
           + +LEA DRIGGRV ++K F GV+V  GA     V G  +NPV  +  + G+        
Sbjct: 362 VTVLEAKDRIGGRVWDDKSFKGVTVGRGA---QIVNGCINNPVALMCEQLGISM---HKF 415
Query: 92  NARYNIYDRSGKIIPSGV--AADSYKKAVESAIANLKNLEAT------NSNIGEVIKAAT 143
             R ++    G+I    +    D +  A+   ++  +  +           I E+ KA  
Sbjct: 416 GERCDLIQEGGRITDPTIDKRMDFHFNALLDVVSEWRKDKTQLQDVPLGEKIEEIYKAFI 475
Query: 144 ELPSSPKTPLE-LAIDFILHDFEMA---EVEPIST--------YVDFGEREFLVADERGY 191
           +      + LE   + F L + E A    +  +S         +  F     L+    GY
Sbjct: 476 KESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTP--GY 533
Query: 192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSAS 251
           + ++ K+AE          LD  ++L   V+ + +S + V V T DG  Y A  V+++  
Sbjct: 534 SVIIEKLAEG---------LD--IQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVP 582
Query: 252 IGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCS-PGKEFFIY---AH 307
           + +LQ   I F PPL + K +AI      +  KI L+FP +FW     G +FF +   + 
Sbjct: 583 LALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSA 642
Query: 308 ERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFG-PDIP 366
            +RG +  +  M+     S +L+  +       V    D++ L++ M  L+++F   ++P
Sbjct: 643 SKRGLFAVFYDMDPQKKHS-VLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVP 701
Query: 367 NATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAG-IFFTGEHTSERFNGYVHG 425
           + T   V RW  + + + +YS        +  + I   + G +FF GE T+  F   V G
Sbjct: 702 DPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTG 761
Query: 426 GYLAGI 431
            YL+G+
Sbjct: 762 AYLSGV 767

>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1 Length = 664

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 149/331 (45%), Gaps = 48/331 (14%)
Query: 136 GEVIKAATELPSSPKTPLELA------IDFILHDFEMAEVEPISTYVDFGEREFLVADER 189
           G++ +   EL ++P + + L+      +D+   + E A   P+ST      + +   D+ 
Sbjct: 331 GKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLST---LSLKHWDQDDDF 387
Query: 190 GY--AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTV------KTEDGCVY 241
            +  +HL  +     +  +  + LD  +KLN  VR++Q++ +G  V       T    +Y
Sbjct: 388 EFTGSHLTVRNGYSCVPVALAEGLD--IKLNTAVRQVQYTASGCEVIAVNTRSTSQTFIY 445
Query: 242 EANYVILSASIGVL--QSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPG 299
           + + V+ +  +GVL  Q   + F PPLP+WKT A+++       K+ L F   FW   P 
Sbjct: 446 KCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPS 503
Query: 300 KEFFIY----AHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRV-EAQPDEETLKEAM 354
              F +       R   + FW    N Y     +++ L  GE+  + E   D+  +   +
Sbjct: 504 VNLFGHVGSTTASRGELFLFW----NLYKAP--ILLALVAGEAAGIMENISDDVIVGRCL 557
Query: 355 EVLQDMFGPD-IPNATDILVPRWWNNRFQRGSYS---------NYPI----ISDNQLVNS 400
            +L+ +FG   +P   + +V RW  + + RGSYS         +Y +    I+    +  
Sbjct: 558 AILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPG 617
Query: 401 IRAPVAGIFFTGEHTSERFNGYVHGGYLAGI 431
              P+  +FF GEHT   +   VHG  L+G+
Sbjct: 618 APQPIPRLFFAGEHTIRNYPATVHGALLSGL 648

>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex Length = 662

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 149/331 (45%), Gaps = 48/331 (14%)
Query: 136 GEVIKAATELPSSPKTPLELA------IDFILHDFEMAEVEPISTYVDFGEREFLVADER 189
           G++ +   EL ++P + + L+      +D+   + E A   P+ST      + +   D+ 
Sbjct: 331 GKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLST---LSLKHWDQDDDF 387
Query: 190 GY--AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTV------KTEDGCVY 241
            +  +HL  +     +  +  + LD  +KLN  VR+++++ +G  V       T    +Y
Sbjct: 388 EFTGSHLTVRNGYSCVPVALAEGLD--IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIY 445
Query: 242 EANYVILSASIGVL--QSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPG 299
           + + V+ +  +GVL  Q   + F PPLP+WKT A+++       K+ L F   FW   P 
Sbjct: 446 KCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPS 503
Query: 300 KEFFIY----AHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRV-EAQPDEETLKEAM 354
              F +       R   + FW    N Y     +++ L  GE+  + E   D+  +   +
Sbjct: 504 VNLFGHVGSTTASRGELFLFW----NLYKAP--ILLALVAGEAAGIMENISDDVIVGRCL 557
Query: 355 EVLQDMFGPD-IPNATDILVPRWWNNRFQRGSYS---------NYPI----ISDNQLVNS 400
            +L+ +FG   +P   + +V RW  + + RGSYS         +Y +    I+    +  
Sbjct: 558 AILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPG 617
Query: 401 IRAPVAGIFFTGEHTSERFNGYVHGGYLAGI 431
              P+  +FF GEHT   +   VHG  L+G+
Sbjct: 618 APQPIPRLFFAGEHTIRNYPATVHGALLSGL 648

>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific Demethylase-1 Length = 664

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 149/331 (45%), Gaps = 48/331 (14%)
Query: 136 GEVIKAATELPSSPKTPLELA------IDFILHDFEMAEVEPISTYVDFGEREFLVADER 189
           G++ +   EL ++P + + L+      +D+   + E A   P+ST      + +   D+ 
Sbjct: 331 GKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLST---LSLKHWDQDDDF 387
Query: 190 GY--AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTV------KTEDGCVY 241
            +  +HL  +     +  +  + LD  +KLN  VR+++++ +G  V       T    +Y
Sbjct: 388 EFTGSHLTVRNGYSCVPVALAEGLD--IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIY 445
Query: 242 EANYVILSASIGVL--QSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPG 299
           + + V+ +  +GVL  Q   + F PPLP+WKT A+++       K+ L F   FW   P 
Sbjct: 446 KCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPS 503
Query: 300 KEFFIY----AHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRV-EAQPDEETLKEAM 354
              F +       R   + FW    N Y     +++ L  GE+  + E   D+  +   +
Sbjct: 504 VNLFGHVGSTTASRGELFLFW----NLYKAP--ILLALVAGEAAGIMENISDDVIVGRCL 557
Query: 355 EVLQDMFGPD-IPNATDILVPRWWNNRFQRGSYS---------NYPI----ISDNQLVNS 400
            +L+ +FG   +P   + +V RW  + + RGSYS         +Y +    I+    +  
Sbjct: 558 AILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPG 617
Query: 401 IRAPVAGIFFTGEHTSERFNGYVHGGYLAGI 431
              P+  +FF GEHT   +   VHG  L+G+
Sbjct: 618 APQPIPRLFFAGEHTIRNYPATVHGALLSGL 648

>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3 Recognition Length = 730

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 149/331 (45%), Gaps = 48/331 (14%)
Query: 136 GEVIKAATELPSSPKTPLELA------IDFILHDFEMAEVEPISTYVDFGEREFLVADER 189
           G++ +   EL ++P + + L+      +D+   + E A   P+ST      + +   D+ 
Sbjct: 380 GKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLST---LSLKHWDQDDDF 436
Query: 190 GY--AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTV------KTEDGCVY 241
            +  +HL  +     +  +  + LD  +KLN  VR+++++ +G  V       T    +Y
Sbjct: 437 EFTGSHLTVRNGYSCVPVALAEGLD--IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIY 494
Query: 242 EANYVILSASIGVL--QSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPG 299
           + + V+ +  +GVL  Q   + F PPLP+WKT A+++       K+ L F   FW   P 
Sbjct: 495 KCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPS 552
Query: 300 KEFFIY----AHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRV-EAQPDEETLKEAM 354
              F +       R   + FW    N Y     +++ L  GE+  + E   D+  +   +
Sbjct: 553 VNLFGHVGSTTASRGELFLFW----NLYKAP--ILLALVAGEAAGIMENISDDVIVGRCL 606
Query: 355 EVLQDMFGPD-IPNATDILVPRWWNNRFQRGSYS---------NYPI----ISDNQLVNS 400
            +L+ +FG   +P   + +V RW  + + RGSYS         +Y +    I+    +  
Sbjct: 607 AILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPG 666
Query: 401 IRAPVAGIFFTGEHTSERFNGYVHGGYLAGI 431
              P+  +FF GEHT   +   VHG  L+G+
Sbjct: 667 APQPIPRLFFAGEHTIRNYPATVHGALLSGL 697

>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution Length = 660

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 149/331 (45%), Gaps = 48/331 (14%)
Query: 136 GEVIKAATELPSSPKTPLELA------IDFILHDFEMAEVEPISTYVDFGEREFLVADER 189
           G++ +   EL ++P + + L+      +D+   + E A   P+ST      + +   D+ 
Sbjct: 331 GKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLST---LSLKHWDQDDDF 387
Query: 190 GY--AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTV------KTEDGCVY 241
            +  +HL  +     +  +  + LD  +KLN  VR+++++ +G  V       T    +Y
Sbjct: 388 EFTGSHLTVRNGYSCVPVALAEGLD--IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIY 445
Query: 242 EANYVILSASIGVL--QSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPG 299
           + + V+ +  +GVL  Q   + F PPLP+WKT A+++       K+ L F   FW   P 
Sbjct: 446 KCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPS 503
Query: 300 KEFFIY----AHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRV-EAQPDEETLKEAM 354
              F +       R   + FW    N Y     +++ L  GE+  + E   D+  +   +
Sbjct: 504 VNLFGHVGSTTASRGELFLFW----NLYKAP--ILLALVAGEAAGIMENISDDVIVGRCL 557
Query: 355 EVLQDMFGPD-IPNATDILVPRWWNNRFQRGSYS---------NYPI----ISDNQLVNS 400
            +L+ +FG   +P   + +V RW  + + RGSYS         +Y +    I+    +  
Sbjct: 558 AILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPG 617
Query: 401 IRAPVAGIFFTGEHTSERFNGYVHGGYLAGI 431
              P+  +FF GEHT   +   VHG  L+G+
Sbjct: 618 APQPIPRLFFAGEHTIRNYPATVHGALLSGL 648

>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine Length = 852

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 149/331 (45%), Gaps = 48/331 (14%)
Query: 136 GEVIKAATELPSSPKTPLELA------IDFILHDFEMAEVEPISTYVDFGEREFLVADER 189
           G++ +   EL ++P + + L+      +D+   + E A   P+ST      + +   D+ 
Sbjct: 502 GKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLST---LSLKHWDQDDDF 558
Query: 190 GY--AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTV------KTEDGCVY 241
            +  +HL  +     +  +  + LD  +KLN  VR+++++ +G  V       T    +Y
Sbjct: 559 EFTGSHLTVRNGYSCVPVALAEGLD--IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIY 616
Query: 242 EANYVILSASIGVL--QSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPG 299
           + + V+ +  +GVL  Q   + F PPLP+WKT A+++       K+ L F   FW   P 
Sbjct: 617 KCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPS 674
Query: 300 KEFFIY----AHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRV-EAQPDEETLKEAM 354
              F +       R   + FW    N Y     +++ L  GE+  + E   D+  +   +
Sbjct: 675 VNLFGHVGSTTASRGELFLFW----NLYKAP--ILLALVAGEAAGIMENISDDVIVGRCL 728
Query: 355 EVLQDMFGPD-IPNATDILVPRWWNNRFQRGSYS---------NYPI----ISDNQLVNS 400
            +L+ +FG   +P   + +V RW  + + RGSYS         +Y +    I+    +  
Sbjct: 729 AILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPG 788
Query: 401 IRAPVAGIFFTGEHTSERFNGYVHGGYLAGI 431
              P+  +FF GEHT   +   VHG  L+G+
Sbjct: 789 APQPIPRLFFAGEHTIRNYPATVHGALLSGL 819

>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of Nucleosomes By The Human Lsd1 Histone Demethylase Length = 666

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 149/331 (45%), Gaps = 48/331 (14%)
Query: 136 GEVIKAATELPSSPKTPLELA------IDFILHDFEMAEVEPISTYVDFGEREFLVADER 189
           G++ +   EL ++P + + L+      +D+   + E A   P+ST      + +   D+ 
Sbjct: 332 GKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLST---LSLKHWDQDDDF 388
Query: 190 GY--AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTV------KTEDGCVY 241
            +  +HL  +     +  +  + LD  +KLN  VR+++++ +G  V       T    +Y
Sbjct: 389 EFTGSHLTVRNGYSCVPVALAEGLD--IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIY 446
Query: 242 EANYVILSASIGVL--QSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPG 299
           + + V+ +  +GVL  Q   + F PPLP+WKT A+++       K+ L F   FW   P 
Sbjct: 447 KCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPS 504
Query: 300 KEFFIY----AHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRV-EAQPDEETLKEAM 354
              F +       R   + FW    N Y     +++ L  GE+  + E   D+  +   +
Sbjct: 505 VNLFGHVGSTTASRGELFLFW----NLYKAP--ILLALVAGEAAGIMENISDDVIVGRCL 558
Query: 355 EVLQDMFGPD-IPNATDILVPRWWNNRFQRGSYS---------NYPI----ISDNQLVNS 400
            +L+ +FG   +P   + +V RW  + + RGSYS         +Y +    I+    +  
Sbjct: 559 AILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPG 618
Query: 401 IRAPVAGIFFTGEHTSERFNGYVHGGYLAGI 431
              P+  +FF GEHT   +   VHG  L+G+
Sbjct: 619 APQPIPRLFFAGEHTIRNYPATVHGALLSGL 649

>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of Human Histone Lysine Demethylase Lsd1 Length = 734

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 149/331 (45%), Gaps = 48/331 (14%)
Query: 136 GEVIKAATELPSSPKTPLELA------IDFILHDFEMAEVEPISTYVDFGEREFLVADER 189
           G++ +   EL ++P + + L+      +D+   + E A   P+ST      + +   D+ 
Sbjct: 384 GKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLST---LSLKHWDQDDDF 440
Query: 190 GY--AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTV------KTEDGCVY 241
            +  +HL  +     +  +  + LD  +KLN  VR+++++ +G  V       T    +Y
Sbjct: 441 EFTGSHLTVRNGYSCVPVALAEGLD--IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIY 498
Query: 242 EANYVILSASIGVL--QSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPG 299
           + + V+ +  +GVL  Q   + F PPLP+WKT A+++       K+ L F   FW   P 
Sbjct: 499 KCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPS 556
Query: 300 KEFFIY----AHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRV-EAQPDEETLKEAM 354
              F +       R   + FW    N Y     +++ L  GE+  + E   D+  +   +
Sbjct: 557 VNLFGHVGSTTASRGELFLFW----NLYKAP--ILLALVAGEAAGIMENISDDVIVGRCL 610
Query: 355 EVLQDMFGPD-IPNATDILVPRWWNNRFQRGSYS---------NYPI----ISDNQLVNS 400
            +L+ +FG   +P   + +V RW  + + RGSYS         +Y +    I+    +  
Sbjct: 611 AILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPG 670
Query: 401 IRAPVAGIFFTGEHTSERFNGYVHGGYLAGI 431
              P+  +FF GEHT   +   VHG  L+G+
Sbjct: 671 APQPIPRLFFAGEHTIRNYPATVHGALLSGL 701

>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2- Imidazoline Length = 520

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 106/250 (42%), Gaps = 27/250 (10%)
Query: 210 ILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKW 269
           +L +R+KL + V  +  +R  V V+T +  +YEA YVI  ++I       I F PPLP  
Sbjct: 224 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVI--SAIPPTLGMKIHFNPPLPMM 281
Query: 270 KTEAIEKCDVMVYTKIFLKFPCKFWP----CSPGKEFFIYAHERRGYYTFWQHMENAYPG 325
           + + I +  +    K  + +   FW     C       I   E    YT    +++  P 
Sbjct: 282 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCG---TMIIDGEEAPVAYT----LDDTKPE 334
Query: 326 SNILVVT--LTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVP------RWW 377
            N   +   +   +++++     EE LK+  E+   + G     + + L P       W 
Sbjct: 335 GNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLG-----SLEALEPVHYEEKNWC 389
Query: 378 NNRFQRGSYSNY-PIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKA 436
             ++  G Y+ Y P     Q    +R PV  I+F G  T+  ++GY+ G   AG    + 
Sbjct: 390 EEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAARE 449
Query: 437 VVEKIRKDNE 446
           ++  + K  E
Sbjct: 450 ILHAMGKIPE 459

>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With Rasagiline Length = 520

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 106/250 (42%), Gaps = 27/250 (10%)
Query: 210 ILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKW 269
           +L +R+KL + V  +  +R  V V+T +  +YEA YVI  ++I       I F PPLP  
Sbjct: 224 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVI--SAIPPTLGMKIHFNPPLPMM 281
Query: 270 KTEAIEKCDVMVYTKIFLKFPCKFWP----CSPGKEFFIYAHERRGYYTFWQHMENAYPG 325
           + + I +  +    K  + +   FW     C       I   E    YT    +++  P 
Sbjct: 282 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCG---TMIIDGEEAPVAYT----LDDTKPE 334
Query: 326 SNILVVT--LTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVP------RWW 377
            N   +   +   +++++     EE LK+  E+   + G     + + L P       W 
Sbjct: 335 GNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLG-----SLEALEPVHYEEKNWC 389
Query: 378 NNRFQRGSYSNY-PIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKA 436
             ++  G Y+ Y P     Q    +R PV  I+F G  T+  ++GY+ G   AG    + 
Sbjct: 390 EEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAARE 449
Query: 437 VVEKIRKDNE 446
           ++  + K  E
Sbjct: 450 ILHAMGKIPE 459

>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine Length = 519

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 106/250 (42%), Gaps = 27/250 (10%)
Query: 210 ILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKW 269
           +L +R+KL + V  +  +R  V V+T +  +YEA YVI  ++I       I F PPLP  
Sbjct: 223 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVI--SAIPPTLGMKIHFNPPLPMM 280
Query: 270 KTEAIEKCDVMVYTKIFLKFPCKFWP----CSPGKEFFIYAHERRGYYTFWQHMENAYPG 325
           + + I +  +    K  + +   FW     C       I   E    YT    +++  P 
Sbjct: 281 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCG---TMIIDGEEAPVAYT----LDDTKPE 333
Query: 326 SNILVVT--LTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVP------RWW 377
            N   +   +   +++++     EE LK+  E+   + G     + + L P       W 
Sbjct: 334 GNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLG-----SLEALEPVHYEEKNWC 388
Query: 378 NNRFQRGSYSNY-PIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKA 436
             ++  G Y+ Y P     Q    +R PV  I+F G  T+  ++GY+ G   AG    + 
Sbjct: 389 EEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAARE 448
Query: 437 VVEKIRKDNE 446
           ++  + K  E
Sbjct: 449 ILHAMGKIPE 458

>pdb|1GOS|A Chain A, Human Monoamine Oxidase B Length = 520

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 106/250 (42%), Gaps = 27/250 (10%)
Query: 210 ILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKW 269
           +L +R+KL + V  +  +R  V V+T +  +YEA YVI  ++I       I F PPLP  
Sbjct: 224 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVI--SAIPPTLGMKIHFNPPLPMM 281
Query: 270 KTEAIEKCDVMVYTKIFLKFPCKFWP----CSPGKEFFIYAHERRGYYTFWQHMENAYPG 325
           + + I +  +    K  + +   FW     C       I   E    YT    +++  P 
Sbjct: 282 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCG---TMIIDGEEAPVAYT----LDDTKPE 334
Query: 326 SNILVVT--LTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVP------RWW 377
            N   +   +   +++++     EE LK+  E+   + G     + + L P       W 
Sbjct: 335 GNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLG-----SLEALEPVHYEEKNWC 389
Query: 378 NNRFQRGSYSNY-PIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKA 436
             ++  G Y+ Y P     Q    +R PV  I+F G  T+  ++GY+ G   AG    + 
Sbjct: 390 EEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAARE 449
Query: 437 VVEKIRKDNE 446
           ++  + K  E
Sbjct: 450 ILHAMGKIPE 459

>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine Oxidase B: Structures And Catalytic Properties Of Tyr435 Mutant Proteins Length = 520

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 106/250 (42%), Gaps = 27/250 (10%)
Query: 210 ILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKW 269
           +L +R+KL + V  +  +R  V V+T +  +YEA YVI  ++I       I F PPLP  
Sbjct: 224 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVI--SAIPPTLGMKIHFNPPLPMM 281
Query: 270 KTEAIEKCDVMVYTKIFLKFPCKFWP----CSPGKEFFIYAHERRGYYTFWQHMENAYPG 325
           + + I +  +    K  + +   FW     C       I   E    YT    +++  P 
Sbjct: 282 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCG---TMIIDGEEAPVAYT----LDDTKPE 334
Query: 326 SNILVVT--LTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVP------RWW 377
            N   +   +   +++++     EE LK+  E+   + G     + + L P       W 
Sbjct: 335 GNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLG-----SLEALEPVHYEEKNWC 389
Query: 378 NNRFQRGSYSNY-PIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKA 436
             ++  G Y+ Y P     Q    +R PV  I+F G  T+  ++G++ G   AG    + 
Sbjct: 390 EEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGFMEGAVEAGERAARE 449
Query: 437 VVEKIRKDNE 446
           ++  + K  E
Sbjct: 450 ILHAMGKIPE 459

>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine Oxidase B: Structures And Catalytic Properties Of Tyr435 Mutant Proteins Length = 520

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 106/250 (42%), Gaps = 27/250 (10%)
Query: 210 ILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKW 269
           +L +R+KL + V  +  +R  V V+T +  +YEA YVI  ++I       I F PPLP  
Sbjct: 224 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVI--SAIPPTLGMKIHFNPPLPMM 281
Query: 270 KTEAIEKCDVMVYTKIFLKFPCKFWP----CSPGKEFFIYAHERRGYYTFWQHMENAYPG 325
           + + I +  +    K  + +   FW     C       I   E    YT    +++  P 
Sbjct: 282 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCG---TMIIDGEEAPVAYT----LDDTKPE 334
Query: 326 SNILVVT--LTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVP------RWW 377
            N   +   +   +++++     EE LK+  E+   + G     + + L P       W 
Sbjct: 335 GNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLG-----SLEALEPVHYEEKNWC 389
Query: 378 NNRFQRGSYSNY-PIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKA 436
             ++  G Y+ Y P     Q    +R PV  I+F G  T+  ++G++ G   AG    + 
Sbjct: 390 EEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGWMEGAVEAGERAARE 449
Query: 437 VVEKIRKDNE 446
           ++  + K  E
Sbjct: 450 ILHAMGKIPE 459

>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera Ammodytes Ammodytes: Stabilization Of The Quaternary Structure By Divalent Ions And Structural Changes In The Dynamic Active Site Length = 486

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 108/465 (23%), Positives = 191/465 (41%), Gaps = 70/465 (15%)
Query: 24  ILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGG----KESNPVWELAS 79
           +LA  G   + +LEAS+R GGRVR  +          GW A +G     ++   V E   
Sbjct: 51  VLAGAG-HKVTVLEASERAGGRVRTHR------NSKEGWYANLGPMRIPEKHRIVREYIR 103
Query: 80  KSGLRTC-FS-DYTNARY---NIYDRSGKI-----------IPS---GVAADSYKKAVES 120
           K GL    FS +  NA Y   NI  R G++            PS     A   Y++++ S
Sbjct: 104 KFGLNLNEFSQENDNAWYFIKNIRKRVGEVNKDPGLLKYPVKPSEEGKSAGQLYEESLGS 163
Query: 121 AIANLK--------NLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAEVEPI 172
           A+ +LK        N   T S    +IK     P         A+D I  D    +    
Sbjct: 164 AVKDLKRTNCSYILNKYDTYSTKEYLIKEGNLSPG--------AVDMI-GDLLNEDSGYY 214
Query: 173 STYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT 232
            ++++  + + + A E+ +  ++  M +  L TS  + ++ ++K N  V ++Q + N VT
Sbjct: 215 VSFIESLKHDDIFAYEKRFDEIVGGMDQ--LPTSMYRAIEEKVKFNARVIKIQQNANQVT 272
Query: 233 VKTE----DGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLK 288
           V  +    D     A+YVI+  +    +   I F+PPLP  K  A+        TKIFL 
Sbjct: 273 VTYQTPEKDTSSNTADYVIVCTTSRAARR--IQFEPPLPPKKQHALRSVHYRSGTKIFLT 330
Query: 289 FPCKFWPCS--PGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEA--- 343
              KFW      G +       R  YY       N   G  +++      ++   +A   
Sbjct: 331 CSSKFWEDDGIHGGKSTTDLPSRFIYYP----NHNFSTGVGVIIAYGIGDDANFFQALKF 386
Query: 344 QPDEETLKEAMEVLQDMFGPDIPN-ATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIR 402
           +   + +   + ++  +   +I +     ++ +W  +++  G+ + +      +   ++ 
Sbjct: 387 KDCADIVFNDLSLIHQLPKEEIQSFCYPSMIQKWSLDKYAMGAITTFTPYQFQRFSEALT 446
Query: 403 APVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNER 447
           AP   IFF GE+T+E      HG   + I +G      + + +E+
Sbjct: 447 APQGRIFFAGEYTAE-----AHGWIDSTIKSGLTAARDVNRASEQ 486

>pdb|2C72|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine Oxidase B: Structures And Catalytic Properties Of Tyr435 Mutant Proteins Length = 520

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 106/250 (42%), Gaps = 27/250 (10%)
Query: 210 ILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKW 269
           +L +R+KL + V  +  +R  V V+T +  +YEA YVI  ++I       I F PPLP  
Sbjct: 224 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVI--SAIPPTLGMKIHFNPPLPMM 281
Query: 270 KTEAIEKCDVMVYTKIFLKFPCKFWP----CSPGKEFFIYAHERRGYYTFWQHMENAYPG 325
           + + I +  +    K  + +   FW     C       I   E    YT    +++  P 
Sbjct: 282 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCG---TMIIDGEEAPVAYT----LDDTKPE 334
Query: 326 SNILVVT--LTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVP------RWW 377
            N   +   +   +++++     EE LK+  E+   + G     + + L P       W 
Sbjct: 335 GNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLG-----SLEALEPVHYEEKNWC 389
Query: 378 NNRFQRGSYSNY-PIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKA 436
             ++  G Y+ Y P     Q    +R PV  I+F G  T+  ++G++ G   AG    + 
Sbjct: 390 EEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGHMEGAVEAGERAARE 449
Query: 437 VVEKIRKDNE 446
           ++  + K  E
Sbjct: 450 ILHAMGKIPE 459

>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With Harmine Length = 513

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 102/478 (21%), Positives = 184/478 (38%), Gaps = 89/478 (18%)
Query: 23  KILAENGIEDILILEASDRIGGR---VRNEKFGGVSVELGAGWIAGVGGKESNPVWELAS 79
           K+L E G+  +L+LEA DR+GGR   +RNE      V++G  ++    G   N +  L+ 
Sbjct: 19  KLLTEYGV-SVLVLEARDRVGGRTYTIRNEHVD--YVDVGGAYV----GPTQNRILRLSK 71
Query: 80  KSGLRT-------------------------------CFSDYTNARYNIYDRSGKIIPSG 108
           + G+ T                                + DY N    I D  GK IP+ 
Sbjct: 72  ELGIETYKVNVSERLVQYVKGKTYPFRGAFPPVWNPIAYLDYNNLWRTI-DNMGKEIPTD 130
Query: 109 VA-----ADSYKKAVESAIANLKNLEATNSNIGEV---IKAATELPSSPKTPLEL-AIDF 159
                  AD + K     + +      T      +   I   +E       P E+ A+ F
Sbjct: 131 APWEAQHADKWDKMTMKELIDKICWTKTARRFAYLFVNINVTSE-------PHEVSALWF 183
Query: 160 ILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNK 219
           + +  +      I +  + G+       ER +     +++E  +      +L +++KLN 
Sbjct: 184 LWYVKQCGGTTRIFSVTNGGQ-------ERKFVGGSGQVSERIMD-----LLGDQVKLNH 231
Query: 220 VVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDV 279
            V  +  S + + ++T +   YE  YVI   +I    +  I F+P LP  + + I++  +
Sbjct: 232 PVTHVDQSSDNIIIETLNHEHYECKYVI--NAIPPTLTAKIHFRPELPAERNQLIQRLPM 289
Query: 280 MVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVT--LTNGE 337
               K  + +   FW         I   E          +++  P  ++  +   +   +
Sbjct: 290 GAVIKCMMYYKEAFWKKKDYCGCMIIEDEDAPISI---TLDDTKPDGSLPAIMGFILARK 346
Query: 338 SKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVP------RWWNNRFQRGSYSNY-P 390
           + R+     E   K+  E+   + G     + + L P       W   ++  G Y+ Y P
Sbjct: 347 ADRLAKLHKEIRKKKICELYAKVLG-----SQEALHPVHYEEKNWCEEQYSGGCYTAYFP 401
Query: 391 IISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNERN 448
                Q    IR PV  IFF G  T+ +++GY+ G   AG    + V+  + K  E++
Sbjct: 402 PGIMTQYGRVIRQPVGRIFFAGTETATKWSGYMEGAVEAGERAAREVLNGLGKVTEKD 459

>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline, Crystal Form A Length = 527

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 102/478 (21%), Positives = 184/478 (38%), Gaps = 89/478 (18%)
Query: 23  KILAENGIEDILILEASDRIGGR---VRNEKFGGVSVELGAGWIAGVGGKESNPVWELAS 79
           K+L E G+  +L+LEA DR+GGR   +RNE      V++G  ++    G   N +  L+ 
Sbjct: 30  KLLTEYGV-SVLVLEARDRVGGRTYTIRNEHVD--YVDVGGAYV----GPTQNRILRLSK 82
Query: 80  KSGLRT-------------------------------CFSDYTNARYNIYDRSGKIIPSG 108
           + G+ T                                + DY N    I D  GK IP+ 
Sbjct: 83  ELGIETYKVNVSERLVQYVKGKTYPFRGAFPPVWNPIAYLDYNNLWRTI-DNMGKEIPTD 141
Query: 109 VA-----ADSYKKAVESAIANLKNLEATNSNIGEV---IKAATELPSSPKTPLEL-AIDF 159
                  AD + K     + +      T      +   I   +E       P E+ A+ F
Sbjct: 142 APWEAQHADKWDKMTMKELIDKICWTKTARRFAYLFVNINVTSE-------PHEVSALWF 194
Query: 160 ILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNK 219
           + +  +      I +  + G+       ER +     +++E  +      +L +++KLN 
Sbjct: 195 LWYVKQCGGTTRIFSVTNGGQ-------ERKFVGGSGQVSERIMD-----LLGDQVKLNH 242
Query: 220 VVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDV 279
            V  +  S + + ++T +   YE  YVI   +I    +  I F+P LP  + + I++  +
Sbjct: 243 PVTHVDQSSDNIIIETLNHEHYECKYVI--NAIPPTLTAKIHFRPELPAERNQLIQRLPM 300
Query: 280 MVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVT--LTNGE 337
               K  + +   FW         I   E          +++  P  ++  +   +   +
Sbjct: 301 GAVIKCMMYYKEAFWKKKDYCGCMIIEDEDAPISI---TLDDTKPDGSLPAIMGFILARK 357
Query: 338 SKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVP------RWWNNRFQRGSYSNY-P 390
           + R+     E   K+  E+   + G     + + L P       W   ++  G Y+ Y P
Sbjct: 358 ADRLAKLHKEIRKKKICELYAKVLG-----SQEALHPVHYEEKNWCEEQYSGGCYTAYFP 412
Query: 391 IISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNERN 448
                Q    IR PV  IFF G  T+ +++GY+ G   AG    + V+  + K  E++
Sbjct: 413 PGIMTQYGRVIRQPVGRIFFAGTETATKWSGYMEGAVEAGERAAREVLNGLGKVTEKD 470

>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In Complex With Methylene Blue And Bearing The Double Mutation I199a- Y326a Length = 519

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 103/246 (41%), Gaps = 19/246 (7%)
Query: 210 ILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKW 269
           +L +R+KL + V  +  +R  V V+T +  +YEA YVI  ++I       I F PPLP  
Sbjct: 223 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVI--SAIPPTLGMKIHFNPPLPMM 280
Query: 270 KTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNIL 329
           + + I +  +    K  + +   FW         I   E          +++  P  N  
Sbjct: 281 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAA---TLDDTKPEGNYA 337
Query: 330 VVT--LTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVP------RWWNNRF 381
            +   +   +++++     EE LK+  E+   + G     + + L P       W   ++
Sbjct: 338 AIMGFILAHKARKLARLTKEERLKKLCELYAKVLG-----SLEALEPVHYEEKNWCEEQY 392
Query: 382 QRGSYSNY-PIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEK 440
             G Y+ Y P     Q    +R PV  I+F G  T+  ++GY+ G   AG    + ++  
Sbjct: 393 SGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILHA 452
Query: 441 IRKDNE 446
           + K  E
Sbjct: 453 MGKIPE 458

>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a) With Harmine Length = 513

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 102/478 (21%), Positives = 184/478 (38%), Gaps = 89/478 (18%)
Query: 23  KILAENGIEDILILEASDRIGGR---VRNEKFGGVSVELGAGWIAGVGGKESNPVWELAS 79
           K+L E G+  +L+LEA DR+GGR   +RNE      V++G  ++    G   N +  L+ 
Sbjct: 19  KLLTEYGV-SVLVLEARDRVGGRTYTIRNEHVD--YVDVGGAYV----GPTQNRILRLSK 71
Query: 80  KSGLRT-------------------------------CFSDYTNARYNIYDRSGKIIPSG 108
           + G+ T                                + DY N    I D  GK IP+ 
Sbjct: 72  ELGIETYKVNVSERLVQYVKGKTYPFRAAFPPVWNPIAYLDYNNLWRTI-DNMGKEIPTD 130
Query: 109 VA-----ADSYKKAVESAIANLKNLEATNSNIGEV---IKAATELPSSPKTPLEL-AIDF 159
                  AD + K     + +      T      +   I   +E       P E+ A+ F
Sbjct: 131 APWEAQHADKWDKMTMKELIDKICWTKTARRFAYLFVNINVTSE-------PHEVSALWF 183
Query: 160 ILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNK 219
           + +  +      I +  + G+       ER +     +++E  +      +L +++KLN 
Sbjct: 184 LWYVKQCGGTTRIFSVTNGGQ-------ERKFVGGSGQVSERIMD-----LLGDQVKLNH 231
Query: 220 VVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDV 279
            V  +  S + + ++T +   YE  YVI   +I    +  I F+P LP  + + I++  +
Sbjct: 232 PVTHVDQSSDNIIIETLNHEHYECKYVI--NAIPPTLTAKIHFRPELPAERNQLIQRLPM 289
Query: 280 MVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVT--LTNGE 337
               K  + +   FW         I   E          +++  P  ++  +   +   +
Sbjct: 290 GAVIKCMMYYKEAFWKKKDYCGCMIIEDEDAPISI---TLDDTKPDGSLPAIMGFILARK 346
Query: 338 SKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVP------RWWNNRFQRGSYSNY-P 390
           + R+     E   K+  E+   + G     + + L P       W   ++  G Y+ Y P
Sbjct: 347 ADRLAKLHKEIRKKKICELYAKVLG-----SQEALHPVHYEEKNWCEEQYSGGCYTAYFP 401
Query: 391 IISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNERN 448
                Q    IR PV  IFF G  T+ +++GY+ G   AG    + V+  + K  E++
Sbjct: 402 PGIMTQYGRVIRQPVGRIFFAGTETATKWSGYMEGAVEAGERAAREVLNGLGKVTEKD 459

>pdb|2C75|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine Oxidase B: Structures And Catalytic Properties Of Tyr435 Mutant Proteins Length = 520

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 105/250 (42%), Gaps = 27/250 (10%)
Query: 210 ILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKW 269
           +L +R+KL + V  +  +R  V V+T +  +YEA YVI  ++I       I F PPLP  
Sbjct: 224 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVI--SAIPPTLGMKIHFNPPLPMM 281
Query: 270 KTEAIEKCDVMVYTKIFLKFPCKFWP----CSPGKEFFIYAHERRGYYTFWQHMENAYPG 325
           + + I +  +    K  + +   FW     C       I   E    YT    +++  P 
Sbjct: 282 RNQMITRVPLGSVIKCIVYYKEPFWRKKDYCG---TMIIDGEEAPVAYT----LDDTKPE 334
Query: 326 SNILVVT--LTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVP------RWW 377
            N   +   +   +++++     EE LK+  E+   + G     + + L P       W 
Sbjct: 335 GNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLG-----SLEALEPVHYEEKNWC 389
Query: 378 NNRFQRGSYSNY-PIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKA 436
             ++  G Y+ Y P     Q    +R PV  I+F G  T+  ++G + G   AG    + 
Sbjct: 390 EEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGLMEGAVEAGERAARE 449
Query: 437 VVEKIRKDNE 446
           ++  + K  E
Sbjct: 450 ILHAMGKIPE 459

>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant Length = 516

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 111/509 (21%), Positives = 178/509 (34%), Gaps = 142/509 (27%)
Query: 25  LAENGIEDILILEASDRIGGRVRN-EKFGGVSVELGAGWIAGVGGKESNPVW----ELAS 79
           L +NGI+D L+LEA DR+GGR++    + G   ++GA W        +NP++    +L+ 
Sbjct: 27  LHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHQDT---LTNPLFLEEAQLSL 83
Query: 80  KSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVI 139
             G      D  N  Y I +  G++       D  K+ +   + N        S   E +
Sbjct: 84  NDGRTRFVFDDDNFIY-IDEERGRV-------DHDKELLLEIVDN------EMSKFAE-L 128
Query: 140 KAATELPSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMA 199
           +    L  S  +  +L + ++L                   R+FL  D+  Y   L +  
Sbjct: 129 EFHQHLGVSDCSFFQLVMKYLLQ-----------------RRQFLTNDQIRYLPQLCRYL 171
Query: 200 E-------EFLSTSD---GKILDNRLKLN--KVVRELQHS-------------------R 228
           E       + LS  D   G    N   LN   VV+ +  S                    
Sbjct: 172 ELWHGLDWKLLSAKDTYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPS 231
Query: 229 NGVTVKTEDGCVYEANYVILSASIGVLQSDL---------ISFKPPLPKWKTEAIEKCDV 279
             VTV  EDG VY A+YVI++    VL   +         I F+PPL     +A +K   
Sbjct: 232 KNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHF 291
Query: 280 MVYTKIFLKFPCKFWP-------------------------------------------- 295
               K+  +F    W                                             
Sbjct: 292 GALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSV 351
Query: 296 -CSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQP--------- 345
            C     FF+   +  G  +F   M+   P +N +     + E      QP         
Sbjct: 352 TCWSQPLFFVNLSKSTGVASFMMLMQ--APLTNHIESIREDKERLFSFFQPVLNKIMKCL 409
Query: 346 DEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPV 405
           D E + + M  ++++   + P   +I+V  W  + + RG+YS       +  V+ + A  
Sbjct: 410 DSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYS--ACFPGDDPVDMVVAMS 467
Query: 406 AG----IFFTGEHTSERFNGYVHGGYLAG 430
            G    I F GEHT     G  +G + +G
Sbjct: 468 NGQDSRIRFAGEHTIMDGAGCAYGAWESG 496

>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate Length = 516

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 111/509 (21%), Positives = 178/509 (34%), Gaps = 142/509 (27%)
Query: 25  LAENGIEDILILEASDRIGGRVRN-EKFGGVSVELGAGWIAGVGGKESNPVW----ELAS 79
           L +NGI+D L+LEA DR+GGR++    + G   ++GA W        +NP++    +L+ 
Sbjct: 27  LHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDT---LTNPLFLEEAQLSL 83
Query: 80  KSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVI 139
             G      D  N  Y I +  G++       D  K+ +   + N        S   E +
Sbjct: 84  NDGRTRFVFDDDNFIY-IDEERGRV-------DHDKELLLEIVDN------EMSKFAE-L 128
Query: 140 KAATELPSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMA 199
           +    L  S  +  +L + ++L                   R+FL  D+  Y   L +  
Sbjct: 129 EFHQHLGVSDCSFFQLVMKYLLQ-----------------RRQFLTNDQIRYLPQLCRYL 171
Query: 200 E-------EFLSTSD---GKILDNRLKLN--KVVRELQHS-------------------R 228
           E       + LS  D   G    N   LN   VV+ +  S                    
Sbjct: 172 ELWHGLDWKLLSAKDTYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPS 231
Query: 229 NGVTVKTEDGCVYEANYVILSASIGVLQSDL---------ISFKPPLPKWKTEAIEKCDV 279
             VTV  EDG VY A+YVI++    VL   +         I F+PPL     +A +K   
Sbjct: 232 KNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHF 291
Query: 280 MVYTKIFLKFPCKFWP-------------------------------------------- 295
               K+  +F    W                                             
Sbjct: 292 GALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSV 351
Query: 296 -CSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQP--------- 345
            C     FF+   +  G  +F   M+   P +N +     + E      QP         
Sbjct: 352 TCWSQPLFFVNLSKSTGVASFMMLMQ--APLTNHIESIREDKERLFSFFQPVLNKIMKCL 409
Query: 346 DEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPV 405
           D E + + M  ++++   + P   +I+V  W  + + RG+YS       +  V+ + A  
Sbjct: 410 DSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYS--ACFPGDDPVDMVVAMS 467
Query: 406 AG----IFFTGEHTSERFNGYVHGGYLAG 430
            G    I F GEHT     G  +G + +G
Sbjct: 468 NGQDSRIRFAGEHTIMDGAGCAYGAWESG 496

>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast Length = 513

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 111/509 (21%), Positives = 178/509 (34%), Gaps = 142/509 (27%)
Query: 25  LAENGIEDILILEASDRIGGRVRN-EKFGGVSVELGAGWIAGVGGKESNPVW----ELAS 79
           L +NGI+D L+LEA DR+GGR++    + G   ++GA W        +NP++    +L+ 
Sbjct: 27  LHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDT---LTNPLFLEEAQLSL 83
Query: 80  KSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVI 139
             G      D  N  Y I +  G++       D  K+ +   + N        S   E +
Sbjct: 84  NDGRTRFVFDDDNFIY-IDEERGRV-------DHDKELLLEIVDN------EMSKFAE-L 128
Query: 140 KAATELPSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMA 199
           +    L  S  +  +L + ++L                   R+FL  D+  Y   L +  
Sbjct: 129 EFHQHLGVSDCSFFQLVMKYLLQ-----------------RRQFLTNDQIRYLPQLCRYL 171
Query: 200 E-------EFLSTSD---GKILDNRLKLN--KVVRELQHS-------------------R 228
           E       + LS  D   G    N   LN   VV+ +  S                    
Sbjct: 172 ELWHGLDWKLLSAKDTYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPS 231
Query: 229 NGVTVKTEDGCVYEANYVILSASIGVLQSDL---------ISFKPPLPKWKTEAIEKCDV 279
             VTV  EDG VY A+YVI++    VL   +         I F+PPL     +A +K   
Sbjct: 232 KNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHF 291
Query: 280 MVYTKIFLKFPCKFWP-------------------------------------------- 295
               K+  +F    W                                             
Sbjct: 292 GALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSV 351
Query: 296 -CSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQP--------- 345
            C     FF+   +  G  +F   M+   P +N +     + E      QP         
Sbjct: 352 TCWSQPLFFVNLSKSTGVASFMMLMQ--APLTNHIESIREDKERLFSFFQPVLNKIMKCL 409
Query: 346 DEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPV 405
           D E + + M  ++++   + P   +I+V  W  + + RG+YS       +  V+ + A  
Sbjct: 410 DSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYS--ACFPGDDPVDMVVAMS 467
Query: 406 AG----IFFTGEHTSERFNGYVHGGYLAG 430
            G    I F GEHT     G  +G + +G
Sbjct: 468 NGQDSRIRFAGEHTIMDGAGCAYGAWESG 496

>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For Substrates And Inhibitors Of Rat Monoamine Oxidase A Length = 534

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 102/467 (21%), Positives = 188/467 (40%), Gaps = 67/467 (14%)
Query: 23  KILAENGIEDILILEASDRIGGR---VRNEKFGGVSVELGAGWIAGVGGKESNPVWELAS 79
           K+L+E  I ++L+LEA DR+GGR   VRNE    V V  G  ++    G   N +  L+ 
Sbjct: 38  KLLSEYKI-NVLVLEARDRVGGRTYTVRNEHVKWVDV--GGAYV----GPTQNRILRLSK 90
Query: 80  KSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVI 139
           + G+ T +    N R   Y + GK  P   A       +  A  +  NL  T   +G+ I
Sbjct: 91  ELGIET-YKVNVNERLVQYVK-GKTYPFRGAFPPVWNPL--AYLDYNNLWRTMDEMGKEI 146
Query: 140 -------------------KAATELPSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGE 180
                              K   +     KT  E A  F+  +      E  + +  +  
Sbjct: 147 PVDAPWQARHAQEWDKMTMKDLIDKICWTKTAREFAYLFVNINVTSEPHEVSALWFLWYV 206
Query: 181 RE-------FLVAD---ERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNG 230
           R+       F V +   ER +     +++E+ +      +L +++KL+  V  +  + + 
Sbjct: 207 RQCGGTARIFSVTNGGQERKFVGGSGQVSEQIMG-----LLGDKVKLSSPVTYIDQTDDN 261
Query: 231 VTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFP 290
           + V+T +   YE  YVI  ++I  + +  I FKP LP  + + I++  +    K  + + 
Sbjct: 262 IIVETLNHEHYECKYVI--SAIPPILTAKIHFKPELPPERNQLIQRLPMGAVIKCMVYYK 319
Query: 291 CKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVT--LTNGESKRVEAQPDEE 348
             FW         I   E          +++  P  ++  +   +   ++ R+     + 
Sbjct: 320 EAFWKKKDYCGCMIIEDEEAPIAI---TLDDTKPDGSLPAIMGFILARKADRLAKLHKDI 376
Query: 349 TLKEAMEVLQDMFGPDIPNATDILVP------RWWNNRFQRGSYSNY-PIISDNQLVNSI 401
             ++  E+   + G     + + L P       W   ++  G Y+ Y P     Q    I
Sbjct: 377 RKRKICELYAKVLG-----SQEALYPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVI 431
Query: 402 RAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNERN 448
           R PV  I+F G  T+ +++GY+ G   AG    + V+  + K  +++
Sbjct: 432 RQPVGRIYFAGTETATQWSGYMEGAVEAGERAAREVLNALGKVAKKD 478

>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu Venom Length = 497

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 107/456 (23%), Positives = 186/456 (40%), Gaps = 78/456 (17%)
Query: 24  ILAENGIEDILILEASDRIGGRV---RNEKFGGVSVELGAGWIAGVGG----KESNPVWE 76
           +LA  G   + +LEAS+R GG+V   RNEK          GW A +G     ++   V E
Sbjct: 64  VLANAG-HQVTVLEASERAGGQVKTYRNEK---------EGWYANLGPMRLPEKHRIVRE 113
Query: 77  LASKSGLRTC-FS-DYTNARY---NIYDRSGKI-----------IPSGV---AADSYKKA 117
              K GL+   FS +  NA Y   NI  R G++            PS V   A   Y+++
Sbjct: 114 YIRKFGLQLNEFSQENENAWYFIKNIRKRVGEVNKDPGVLDYPVKPSEVGKSAGQLYEES 173
Query: 118 VESAIANLK--------NLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAEV 169
           ++ A+  L+        N   T S    ++K     P         A+D I  D    + 
Sbjct: 174 LQKAVEELRRTNCSYMLNKYDTYSTKEYLLKEGNLSPG--------AVDMI-GDLLNEDS 224
Query: 170 EPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRN 229
               ++++  + + + A E+ +  ++  M +  L TS  + +  ++ LN  V ++Q    
Sbjct: 225 GYYVSFIESLKHDDIFAYEKRFDEIVGGMDK--LPTSMYQAIQEKVHLNARVIKIQQDVK 282
Query: 230 GVTVKTE----DGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKI 285
            VTV  +    +     A+YVI+  +    +   I F+PPLP  K  A+        TKI
Sbjct: 283 EVTVTYQTSEKETLSVTADYVIVCTTSRAARR--IKFEPPLPPKKAHALRSVHYRSGTKI 340
Query: 286 FLKFPCKFWPCS--PGKEFFIYAHERRGYYTFWQHMENAYP-GSNILVVTLTNGESKRVE 342
           FL    KFW      G +       R  YY       + +P G  +++      ++   E
Sbjct: 341 FLTCTKKFWEDDGIHGGKSTTDLPSRFIYYP-----NHNFPNGVGVIIAYGIGDDANYFE 395
Query: 343 AQPDEET---LKEAMEVLQDMFGPDIPN-ATDILVPRWWNNRFQRGSYSNYPIISDNQLV 398
           A   E+    +   + ++  +   +I       ++ RW  +++  G  + +         
Sbjct: 396 ALDFEDCGDIVINDLSLIHQLPKEEIQAICRPSMIQRWSLDKYAMGGITTFTPYQFQHFS 455
Query: 399 NSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTG 434
            ++ APV  I+F GE+T++      HG   + I +G
Sbjct: 456 EALTAPVDRIYFAGEYTAQ-----AHGWIASTIKSG 486

>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase From Aspergillus Niger. Length = 495

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 90/452 (19%), Positives = 162/452 (35%), Gaps = 66/452 (14%)
Query: 34  LILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFS---DY 90
           L+LEA DRIGGR  +    G   E+G  W+        + VW   ++  +    S   ++
Sbjct: 66  LLLEARDRIGGRSWSSNIDGYPYEMGGTWVH----WHQSHVWREITRYKMHNALSPSFNF 121
Query: 91  TNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSN----IGEVIKAATELP 146
           +    +   R+     + +  ++  + + SA+    N++ TN          +    E  
Sbjct: 122 SRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPEFR 181
Query: 147 SSPKTPLELAIDFILHDFEMAEVEPISTYV-----------DFGEREFLVADERGYAH-- 193
              +      ID I  +  + E   +  ++            FGE     A   GY +  
Sbjct: 182 KYDEMSYSERIDQIRDELSLNERSSLEAFILLCSGGTLENSSFGEFLHWWA-MSGYTYQG 240
Query: 194 -----LLYK-------MAEEFLSTSDGKILDNRLK--LNKVVRELQHSRNGVTVKTEDGC 239
                + YK        A  F   + G     RL       VR + + R+   V   DG 
Sbjct: 241 CMDCLMSYKFKDGQSAFARRFWEEAAGT---GRLGYVFGCPVRSVVNERDAARVTARDGR 297
Query: 240 VYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPG 299
            + A  V+ +  + VL +  I F P L   +  A++   V + TK+  +   K      G
Sbjct: 298 EFVAKRVVCTIPLNVLST--IQFSPALSTERISAMQAGHVSMCTKVHAEVDNKDMRSWTG 355
Query: 300 KEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDE---ETLKEAMEV 356
                Y   +  Y       +   P  N  +V   N  +     QPDE   ETLK   ++
Sbjct: 356 ---IAYPFNKLCYAI----GDGTTPAGNTHLVCFGNSAN---HIQPDEDVRETLKAVGQL 405
Query: 357 LQDMFGPDIPNATDILVPRWWNNRFQRGS--YSNYPIISDNQLVNSIRAPVAGIFFTGEH 414
               FG        ++   W  + F +G+  +S   ++S  + +  +R    G+ F    
Sbjct: 406 APGTFG-----VKRLVFHNWVKDEFAKGAWFFSRPGMVS--ECLQGLREKHGGVVFANSD 458
Query: 415 TSERFNGYVHGGYLAGIDTGKAVVEKIRKDNE 446
            +  +  ++ G    G    + V+E++    E
Sbjct: 459 WALGWRSFIDGAIEEGTRAARVVLEELGTKRE 490

>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas Length = 486

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 103/255 (40%), Gaps = 21/255 (8%)
Query: 203 LSTSDGKILDNRLKLNKVVRELQHSRNGVTV----KTEDGCVYEANYVILSASIGVLQSD 258
           L TS  + ++ ++ LN  V ++Q +   VTV      ++     A+YVI+  +    +  
Sbjct: 243 LPTSMYRAIEEKVHLNAQVIKIQKNAEKVTVVYQTPAKEMASVTADYVIVCTTSRATRR- 301
Query: 259 LISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCS--PGKEFFIYAHERRGYYTFW 316
            I F+PPLP  K  A+        TKIFL    KFW      G +       R  YY   
Sbjct: 302 -IKFEPPLPPKKAHALRSVHYRSGTKIFLTCTKKFWEDEGIHGGKSTTDLPSRFIYYP-- 358
Query: 317 QHMENAYPGSNILVVTLTNGESKRVEA---QPDEETLKEAMEVLQDMFGPDIPN-ATDIL 372
               N   G  +++      ++   +A   +   + +   + ++  +   +I       +
Sbjct: 359 --NHNFTSGVGVIIAYGIGDDANFFQALDFKDCADIVINDLSLIHQLPREEIQTFCYPSM 416
Query: 373 VPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGID 432
           + +W  +++  G  + +          S+ A V  I+F GEHT+E      HG   + I 
Sbjct: 417 IQKWSLDKYAMGGITTFTPYQFQHFSESLTASVDRIYFAGEHTAE-----AHGWIDSTIK 471
Query: 433 TGKAVVEKIRKDNER 447
           +G      + + +E+
Sbjct: 472 SGLRAARDVNRASEQ 486

>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase From Aspergillus Niger. Length = 495

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 89/452 (19%), Positives = 161/452 (35%), Gaps = 66/452 (14%)
Query: 34  LILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFS---DY 90
           L+LEA DRIGGR  +    G   E+G  W+        + VW   ++  +    S   ++
Sbjct: 66  LLLEARDRIGGRSWSSNIDGYPYEMGGTWVH----WHQSHVWREITRYKMHNALSPSFNF 121
Query: 91  TNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSN----IGEVIKAATELP 146
           +    +   R+     + +  ++  + + SA+    N++ TN          +    E  
Sbjct: 122 SRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPEFR 181
Query: 147 SSPKTPLELAIDFILHDFEMAEVEPISTYV-----------DFGEREFLVADERGYAH-- 193
              +      ID I  +  + E   +  ++            FGE     A   GY +  
Sbjct: 182 KYDEMSYSERIDQIRDELSLNERSSLEAFILLCSGGTLENSSFGEFLHWWA-MSGYTYQG 240
Query: 194 -----LLYK-------MAEEFLSTSDGKILDNRLK--LNKVVRELQHSRNGVTVKTEDGC 239
                + YK        A  F   + G     RL       VR + + R+   V   DG 
Sbjct: 241 CMDCLMSYKFKDGQSAFARRFWEEAAGT---GRLGYVFGCPVRSVVNERDAARVTARDGR 297
Query: 240 VYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPG 299
            + A  V+ +  + VL +  I F P L   +  A++   V + TK+  +   K      G
Sbjct: 298 EFVAKRVVCTIPLNVLST--IQFSPALSTERISAMQAGHVSMCTKVHAEVDNKDMRSWTG 355
Query: 300 KEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDE---ETLKEAMEV 356
                Y   +  Y       +   P  N  +V      +     QPDE   ETLK   ++
Sbjct: 356 ---IAYPFNKLCYAI----GDGTTPAGNTHLVCFGTDAN---HIQPDEDVRETLKAVGQL 405
Query: 357 LQDMFGPDIPNATDILVPRWWNNRFQRGS--YSNYPIISDNQLVNSIRAPVAGIFFTGEH 414
               FG        ++   W  + F +G+  +S   ++S  + +  +R    G+ F    
Sbjct: 406 APGTFG-----VKRLVFHNWVKDEFAKGAWFFSRPGMVS--ECLQGLREKHGGVVFANSD 458
Query: 415 TSERFNGYVHGGYLAGIDTGKAVVEKIRKDNE 446
            +  +  ++ G    G    + V+E++    E
Sbjct: 459 WALGWRSFIDGAIEEGTRAARVVLEELGTKRE 490

>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant Length = 453

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 84/443 (18%), Positives = 168/443 (37%), Gaps = 58/443 (13%)
Query: 33  ILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYTN 92
           + ++EA DR+GGR   +   G  +E+G  W++     +   +  L  + GL+T F  Y  
Sbjct: 31  VAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS----PDQTALISLLDELGLKT-FERY-- 83
Query: 93  ARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTP 152
                  R G+ +    A +  +   +S   N    +  +  I E+   A ++ +     
Sbjct: 84  -------REGESVYISSAGERTRYTGDSFPTNETTKKEMDRLIDEMDDLAAQIGAEEPWA 136
Query: 153 LELAID--------FILHDFEMAEV-EPISTYVDFG------------EREFLVADERGY 191
             LA D        ++++  + AE  + I  ++  G            +   + A    +
Sbjct: 137 HPLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSF 196
Query: 192 AHLLYKMAEEFL------------STSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGC 239
           +HL+    E+F+            S    + L + + LN  VR ++ + +G TV  +   
Sbjct: 197 SHLV---DEDFILDKRVIGGMQQVSIRMAEALGDDVFLNAPVRTVKWNESGATVLADGDI 253
Query: 240 VYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFW-PCSP 298
             EA+ VIL+    +     IS+ PPLP+ + +  +   + +  K+   +   FW     
Sbjct: 254 RVEASRVILAVPPNLYSR--ISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFWREDGL 311
Query: 299 GKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQ 358
               F  +   +  Y    H ++       LV  +++ ++  +     EE     +  L 
Sbjct: 312 SGTGFGASEVVQEVYDNTNHEDD----RGTLVAFVSDEKADAMFELSAEERKATILASLA 367
Query: 359 DMFGPDIPNATDILVPRWWNNRFQRGSYS-NYPIISDNQLVNSIRAPVAGIFFTGEHTSE 417
              GP            W +  + RG Y+ ++ +   ++     R PV  I F+    + 
Sbjct: 368 RYLGPKAEEPVVYYESDWGSEEWTRGCYTASFDLGGLHRYGADSRTPVGPIHFSCSDIAA 427
Query: 418 RFNGYVHGGYLAGIDTGKAVVEK 440
              G+V G    G  T   ++ +
Sbjct: 428 EGYGHVDGAVRMGQRTAADIIAR 450

>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase From Aspergillus Niger Length = 495

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 89/452 (19%), Positives = 161/452 (35%), Gaps = 66/452 (14%)
Query: 34  LILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFS---DY 90
           L+LEA DRIGGR  +    G   E+G  W+        + VW   ++  +    S   ++
Sbjct: 66  LLLEARDRIGGRSWSSNIDGYPYEMGGTWVH----WHQSHVWREITRYKMHNALSPSFNF 121
Query: 91  TNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSN----IGEVIKAATELP 146
           +    +   R+     + +  ++  + + SA+    N++ TN          +    E  
Sbjct: 122 SRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPEFR 181
Query: 147 SSPKTPLELAIDFILHDFEMAEVEPISTYV-----------DFGEREFLVADERGYAH-- 193
              +      ID I  +  + E   +  ++            FGE     A   GY +  
Sbjct: 182 KYDEMSYSERIDQIRDELSLNERSSLEAFILLCSGGTLENSSFGEFLHWWA-MSGYTYQG 240
Query: 194 -----LLYK-------MAEEFLSTSDGKILDNRLK--LNKVVRELQHSRNGVTVKTEDGC 239
                + YK        A  F   + G     RL       VR + + R+   V   DG 
Sbjct: 241 CMDCLMSYKFKDGQSAFARRFWEEAAGT---GRLGYVFGCPVRSVVNERDAARVTARDGR 297
Query: 240 VYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPG 299
            + A  V+ +  + VL +  I F P L   +  A++   V + TK+  +   K      G
Sbjct: 298 EFVAKRVVCTIPLNVLST--IQFSPALSTERISAMQAGHVSMCTKVHAEVDNKDMRSWTG 355
Query: 300 KEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDE---ETLKEAMEV 356
                Y   +  Y       +   P  N  +V      +     QPDE   ETLK   ++
Sbjct: 356 ---IAYPFNKLCYAI----GDGTTPAGNTHLVCFGTDAN---HIQPDEDVRETLKAVGQL 405
Query: 357 LQDMFGPDIPNATDILVPRWWNNRFQRGS--YSNYPIISDNQLVNSIRAPVAGIFFTGEH 414
               FG        ++   W  + F +G+  +S   ++S  + +  +R    G+ F    
Sbjct: 406 APGTFG-----VKRLVFHNWVKDEFAKGAWFFSRPGMVS--ECLQGLREKHGGVVFANSD 458
Query: 415 TSERFNGYVHGGYLAGIDTGKAVVEKIRKDNE 446
            +  +  ++ G    G    + V+E++    E
Sbjct: 459 WALGWRSFIDGAIEEGTRAARVVLEELGTKRE 490

>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant Length = 516

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 103/287 (35%), Gaps = 74/287 (25%)
Query: 213 NRLKLNKVVRELQH--SRNGVTVKTEDGCVYEANYVILSASIGVLQSDL---------IS 261
           N LKL+  V+ +    S+N VTV  EDG VY A+YVI++    VL   +         I 
Sbjct: 215 NWLKLSCEVKSITREPSKN-VTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIE 273
Query: 262 FKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWP-------------------------- 295
           F+PPL     +A +K       K+  +F    W                           
Sbjct: 274 FQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENL 333
Query: 296 -------------------CSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNG 336
                              C     FF+   +  G  +F   M+   P +N +     + 
Sbjct: 334 DELDSMLEREDSQKHTSVTCWSQPLFFVNLSKSTGVASFMMLMQ--APLTNHIESIREDK 391
Query: 337 ESKRVEAQP---------DEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYS 387
           E      QP         D E + + M  ++++   + P   +I+V  W  + + RG+YS
Sbjct: 392 ERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYS 451
Query: 388 NYPIISDNQLVNSIRAPVAG----IFFTGEHTSERFNGYVHGGYLAG 430
                  +  V+ + A   G    I F GEHT     G  +G + +G
Sbjct: 452 --ACFPGDDPVDMVVAMSNGQDSRIRFAGEHTIMDGAGCAYGAWESG 496

>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast Length = 516

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 121/315 (38%), Gaps = 80/315 (25%)
Query: 25  LAENGIEDILILEASDRIGGRVRN-EKFGGVSVELGAGWIAGVGGKESNPVW----ELAS 79
           L +NGI+D L+LEA DR+GGR++    + G   ++GA W        +NP++    +L+ 
Sbjct: 27  LHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDT---LTNPLFLEEAQLSL 83
Query: 80  KSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVI 139
             G      D  N  Y I +  G++       D  K+ +      L+ ++   S   E +
Sbjct: 84  NDGRTRFVFDDDNFIY-IDEERGRV-------DHDKELL------LEIVDNEXSKFAE-L 128
Query: 140 KAATELPSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMA 199
           +    L  S  +  +L   ++L                   R+FL  D+  Y   L +  
Sbjct: 129 EFHQHLGVSDCSFFQLVXKYLLQ-----------------RRQFLTNDQIRYLPQLCRYL 171
Query: 200 E-------EFLSTSD---GKILDNRLKLN--KVVRELQHS--RNGVTVKTE--------- 236
           E       + LS  D   G    N   LN   VV+ +  S  +N + +  E         
Sbjct: 172 ELWHGLDWKLLSAKDTYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPS 231
Query: 237 --------DGCVYEANYVILSASIGVLQSDL---------ISFKPPLPKWKTEAIEKCDV 279
                   DG VY A+YVI++    VL   +         I F+PPL     +A +K   
Sbjct: 232 KNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHF 291
Query: 280 MVYTKIFLKFPCKFW 294
               K+  +F    W
Sbjct: 292 GALGKVIFEFEECCW 306

>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine Oxidase: A394c Mutant Length = 453

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/295 (20%), Positives = 119/295 (40%), Gaps = 52/295 (17%)
Query: 33  ILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYTN 92
           + ++EA DR+GGR   +   G  +E+G  W++     +   +  L  + GL+T F  Y  
Sbjct: 31  VAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS----PDQTALISLLDELGLKT-FERY-- 83
Query: 93  ARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTP 152
                  R G+ +    A +  +   +S   N    +  +  I E+   A ++ +     
Sbjct: 84  -------REGESVYISSAGERTRYTGDSFPTNETTKKEMDRLIDEMDDLAAQIGAEEPWA 136
Query: 153 LELAID--------FILHDFEMAEV-EPISTYVDFG------------EREFLVADERGY 191
             LA D        ++++  + AE  + I  ++  G            +   + A    +
Sbjct: 137 HPLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSF 196
Query: 192 AHLLYKMAEEFL------------STSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGC 239
           +HL+    E+F+            S    + L + + LN  VR ++ + +G TV  +   
Sbjct: 197 SHLV---DEDFILDKRVIGGMQQVSIRMAEALGDDVFLNAPVRTVKWNESGATVLADGDI 253
Query: 240 VYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFW 294
             EA+ VIL+    +     IS+ PPLP+ + +  +   + +  K+   +   FW
Sbjct: 254 RVEASRVILAVPPNLYSR--ISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFW 306

>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine Oxidase: Wild Type Enzyme Length = 453

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/295 (20%), Positives = 119/295 (40%), Gaps = 52/295 (17%)
Query: 33  ILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYTN 92
           + ++EA DR+GGR   +   G  +E+G  W++     +   +  L  + GL+T F  Y  
Sbjct: 31  VAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS----PDQTALISLLDELGLKT-FERY-- 83
Query: 93  ARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTP 152
                  R G+ +    A +  +   +S   N    +  +  I E+   A ++ +     
Sbjct: 84  -------REGESVYISSAGERTRYTGDSFPTNETTKKEMDRLIDEMDDLAAQIGAEEPWA 136
Query: 153 LELAID--------FILHDFEMAEV-EPISTYVDFG------------EREFLVADERGY 191
             LA D        ++++  + AE  + I  ++  G            +   + A    +
Sbjct: 137 HPLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSF 196
Query: 192 AHLLYKMAEEFL------------STSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGC 239
           +HL+    E+F+            S    + L + + LN  VR ++ + +G TV  +   
Sbjct: 197 SHLV---DEDFILDKRVIGGMQQVSIRMAEALGDDVFLNAPVRTVKWNESGATVLADGDI 253
Query: 240 VYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFW 294
             EA+ VIL+    +     IS+ PPLP+ + +  +   + +  K+   +   FW
Sbjct: 254 RVEASRVILAVPPNLYSR--ISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFW 306

>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine Oxidase: P15i-A394c Double Mutant Length = 453

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/295 (20%), Positives = 119/295 (40%), Gaps = 52/295 (17%)
Query: 33  ILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCFSDYTN 92
           + ++EA DR+GGR   +   G  +E+G  W++     +   +  L  + GL+T F  Y  
Sbjct: 31  VAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS----PDQTALISLLDELGLKT-FERY-- 83
Query: 93  ARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTP 152
                  R G+ +    A +  +   +S   N    +  +  I E+   A ++ +     
Sbjct: 84  -------REGESVYISSAGERTRYTGDSFPTNETTKKEMDRLIDEMDDLAAQIGAEEPWA 136
Query: 153 LELAID--------FILHDFEMAEV-EPISTYVDFG------------EREFLVADERGY 191
             LA D        ++++  + AE  + I  ++  G            +   + A    +
Sbjct: 137 HPLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSF 196
Query: 192 AHLLYKMAEEFL------------STSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGC 239
           +HL+    E+F+            S    + L + + LN  VR ++ + +G TV  +   
Sbjct: 197 SHLV---DEDFILDKRVIGGMQQVSIRMAEALGDDVFLNAPVRTVKWNESGATVLADGDI 253
Query: 240 VYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFW 294
             EA+ VIL+    +     IS+ PPLP+ + +  +   + +  K+   +   FW
Sbjct: 254 RVEASRVILAVPPNLYSR--ISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFW 306

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	496
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	1e-145
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	1e-105
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	1e-104
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	1e-92
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	2e-85
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	1e-83
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	4e-82
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	2e-75
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	3e-63
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	1e-22
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	3e-63
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	1e-22
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	1e-31
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	7e-23
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	1e-21
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	1e-19
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	4e-19
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	5e-18
2e1m_C	181	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	9e-18
2e1m_B	130	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	1e-12
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	8e-12
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	1e-11
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	6e-11
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	7e-11
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	7e-10
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	2e-04
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	1e-08
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	4e-07
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	7e-07
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	9e-07
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	5e-06
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	5e-06
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	6e-06
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	8e-06
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	1e-05
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	1e-05
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	1e-05
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	2e-05
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	5e-05
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	5e-05
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	6e-05
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	1e-04
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	1e-04
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	2e-04
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	2e-04
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	2e-04
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	3e-04
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	4e-04
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	4e-04
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	5e-04
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	6e-04
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	6e-04
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	8e-04
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	8e-04
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	8e-04

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472

 Score =  425 bits (1093), Expect = e-145
 Identities = 219/468 (46%), Positives = 309/468 (66%), Gaps = 19/468 (4%)

Query: 3   STSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGW 62
           +T    VI++GAG+SGISA K L+E GI D+LILEA+D IGGR+    F G++VELGA W
Sbjct: 1   ATVGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANW 60

Query: 63  IAGVGGKESNPVWELASKSG-LRTCFSDYTNARYNIYDRSGKIIPSGVAA------DSYK 115
           + GV G + NP+W + + +  LR   SD+     N+Y   G +             DS +
Sbjct: 61  VEGVNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVE 120

Query: 116 KAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAE------- 168
           +  E   A L      + +I  + +     P+ P TP+++ +D+   D+E AE       
Sbjct: 121 EMGEKLSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSL 180

Query: 169 --VEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSD--GKILDNRLKLNKVVREL 224
               P++T+ DFG+  + VAD+RGY  ++Y +A ++L T D  GKI+D RL+LNKVVRE+
Sbjct: 181 QNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREI 240

Query: 225 QHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTK 284
           ++S  GVTVKTED  VY A+YV++SAS+GVLQSDLI FKP LP WK  AI + D+ VYTK
Sbjct: 241 KYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTK 300

Query: 285 IFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQ 344
           IFLKFP KFWP   G+EFF+YA  RRGYY  WQ  E  YP +N+L+VT+T+ ES+R+E Q
Sbjct: 301 IFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQ 360

Query: 345 PDEETLKEAMEVLQDMF-GPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRA 403
            DE+T  E M+VL+ MF G D+P+ATDILVPRWW++RF +G++SN+P+  +    + +RA
Sbjct: 361 SDEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRA 420

Query: 404 PVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNERNNSE 451
           PV  ++FTGEHTSE +NGYVHG YL+GID+ + ++   +K   + + +
Sbjct: 421 PVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQKKMCKYHVQ 468

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score =  319 bits (820), Expect = e-105
 Identities = 85/462 (18%), Positives = 162/462 (35%), Gaps = 33/462 (7%)

Query: 3   STSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGW 62
            T +  V I+GAG SG++A   L + G+  + ++EA DR+GGR   +   G  +E+G  W
Sbjct: 2   PTLQRDVAIVGAGPSGLAAATALRKAGL-SVAVIEARDRVGGRTWTDTIDGAVLEIGGQW 60

Query: 63  IAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAI 122
           ++         +  L  + GL+T           I     +   +G +  + +   +   
Sbjct: 61  VSPDQ----TALISLLDELGLKTFERYREGESVYISSAGERTRYTGDSFPTNETTKKEMD 116

Query: 123 ANLKNLEATNSNIGEVI----KAATELPS-----------SPKTPLELAIDFILHDFEMA 167
             +  ++   + IG         A +L +                 +    FI       
Sbjct: 117 RLIDEMDDLAAQIGAEEPWAHPLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTK 176

Query: 168 EVEPIS------TYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVV 221
                S           G    LV DE            + +S    + L + + LN  V
Sbjct: 177 PAHSFSALQAVLMAASAGSFSHLV-DEDFILDKRVIGGMQQVSIRMAEALGDDVFLNAPV 235

Query: 222 RELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMV 281
           R ++ + +G TV  +     EA+ VIL+    +     IS+ PPLP+ + +  +   + +
Sbjct: 236 RTVKWNESGATVLADGDIRVEASRVILAVPPNLYSR--ISYDPPLPRRQHQMHQHQSLGL 293

Query: 282 YTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRV 341
             K+   +   FW    G     +         +     N       LV  +++ ++  +
Sbjct: 294 VIKVHAVYETPFWR-EDGLSGTGFGASEVVQEVYDNT--NHEDDRGTLVAFVSDEKADAM 350

Query: 342 EAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYS-NYPIISDNQLVNS 400
                EE     +  L    GP            W +  + RG Y+ ++ +   ++    
Sbjct: 351 FELSAEERKATILASLARYLGPKAEEPVVYYESDWGSEEWTRGCYAASFDLGGLHRYGAD 410

Query: 401 IRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIR 442
            R PV  I F+    +     +V G    G  T   ++ + +
Sbjct: 411 SRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIARSK 452

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score =  319 bits (819), Expect = e-104
 Identities = 99/494 (20%), Positives = 198/494 (40%), Gaps = 40/494 (8%)

Query: 4   TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKF-GGVSVELGAGW 62
           +++  V+++G G+SG++A K+L ++G+ ++++LEA DR+GGR    +      V+LG  +
Sbjct: 2   SNKCDVVVVGGGISGMAAAKLLHDSGL-NVVVLEARDRVGGRTYTLRNQKVKYVDLGGSY 60

Query: 63  IAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIP------------SGVA 110
           +    G   N +  LA + GL T   +       I+   GK  P            + + 
Sbjct: 61  V----GPTQNRILRLAKELGLETYKVNEVER--LIHHVKGKSYPFRGPFPPVWNPITYLD 114

Query: 111 ADSYKKAVESAIANLKNLEATNSNIGEV---IKAATELPSSPKTPLEL-AIDFILHDFEM 166
            +++ + ++     + +     + + E    +     L     T          ++    
Sbjct: 115 HNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVT 174

Query: 167 AEVEPIS-----TYV-DFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKV 220
           AE   +S      YV   G    +++   G     +      +S     +L +R+KL + 
Sbjct: 175 AETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERP 234

Query: 221 VRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVM 280
           V  +  +R  V V+T +  +YEA YVI +    +     I F PPLP  + + I +  + 
Sbjct: 235 VIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMK--IHFNPPLPMMRNQMITRVPLG 292

Query: 281 VYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYP--GSNILVVTLTNGES 338
              K  + +   FW     K++                +++  P      ++  +   ++
Sbjct: 293 SVIKCIVYYKEPFW---RKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKA 349

Query: 339 KRVEAQPDEETLKEAMEVLQDMFGP-DIPNATDILVPRWWNNRFQRGSYSNY-PIISDNQ 396
           +++     EE LK+  E+   + G  +           W   ++  G Y+ Y P     Q
Sbjct: 350 RKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQ 409

Query: 397 LVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNERNNSETQ-NF 455
               +R PV  I+F G  T+  ++GY+ G   AG    + ++  + K  E    +++   
Sbjct: 410 YGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILHAMGKIPEDEIWQSEPES 469

Query: 456 LLEPLLALTLTQTE 469
           +  P   +T T  E
Sbjct: 470 VDVPAQPITTTFLE 483

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516

 Score =  290 bits (742), Expect = 1e-92
 Identities = 96/527 (18%), Positives = 196/527 (37%), Gaps = 90/527 (17%)

Query: 1   MDSTSRSP--VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEK-FGGVSVE 57
           M++ S +   VIIIGAG++G+ A   L +NGI+D L+LEA DR+GGR++    + G   +
Sbjct: 1   MNTVSPAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYD 60

Query: 58  LGAGWIAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKA 117
           +GA W        +NP++   ++  L    + +     N      +        +   + 
Sbjct: 61  IGASWH---HDTLTNPLFLEEAQLSLNDGRTRFVFDDDNFIYIDEERGRVDHDKELLLEI 117

Query: 118 VESAIANLKNLEATN----------SNIGEVIKAATELPSSPKTPLELAIDFILHDFEMA 167
           V++ ++    LE               + + +    +  ++ +      +   L  +   
Sbjct: 118 VDNEMSKFAELEFHQHLGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLPQLCRYLELWHGL 177

Query: 168 EVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVREL-QH 226
           + + +S    +   +   A    Y  ++ ++A+            N LKL+  V+ + + 
Sbjct: 178 DWKLLSAKDTYFGHQGRNAFALNYDSVVQRIAQS--------FPQNWLKLSCEVKSITRE 229

Query: 227 SRNGVTVKTEDGCVYEANYVILSASIGVLQSDL---------ISFKPPLPKWKTEAIEKC 277
               VTV  EDG VY A+YVI++    VL   +         I F+PPL     +A +K 
Sbjct: 230 PSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKI 289

Query: 278 DVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYP------------- 324
                 K+  +F    W      +    A+    +    ++ EN                
Sbjct: 290 HFGALGKVIFEFEECCWSNE-SSKIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQKH 348

Query: 325 -------------------GSNILVVTLTNGESKRVEAQPDE------------------ 347
                              G    ++ +    +  +E+  ++                  
Sbjct: 349 TSVTCWSQPLFFVNLSKSTGVASFMMLMQAPLTNHIESIREDKERLFSFFQPVLNKIMKC 408

Query: 348 ---ETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISD-NQLVNSIRA 403
              E + + M  ++++   + P   +I+V  W  + + RG+YS      D   +V ++  
Sbjct: 409 LDSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMVVAMSN 468

Query: 404 PVAG-IFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNERNN 449
                I F GEHT     G  +G + +G      + + ++ ++  ++
Sbjct: 469 GQDSRIRFAGEHTIMDGAGCAYGAWESGRREATRISDLLKLEHHHHH 515

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score =  268 bits (688), Expect = 2e-85
 Identities = 82/462 (17%), Positives = 152/462 (32%), Gaps = 60/462 (12%)

Query: 9   VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV---RNEKFGGVSVELGAGWIAG 65
            I++G G SG+ A + L   G   +L+LE  +R+GGR     +    G+ VE+G  ++  
Sbjct: 4   AIVVGGGFSGLKAARDLTNAGK-KVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYL-- 60

Query: 66  VGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANL 125
              K    +     + G+ T  +    +  +       +  +     S   AVE+A   L
Sbjct: 61  -HRKHHPRLAAELDRYGIPTAAASEFTSFRH-RLGPTAVDQAFPIPGSEAVAVEAATYTL 118

Query: 126 KNLEA--------TNSNIGEV-IKAATELPSSPKTPLELA-IDFILHDFEMAEVEPIST- 174
                         N ++ ++ I     +      P+    +     +      +  S  
Sbjct: 119 LRDAHRIDLEKGLENQDLEDLDIPLNEYVDKLDLPPVSRQFLLAWAWNMLGQPADQASAL 178

Query: 175 ----YVDFG----EREFLVADER---GYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRE 223
                V           L  DE    G A L+  M++E             ++L  VV  
Sbjct: 179 WMLQLVAAHHYSILGVVLSLDEVFSNGSADLVDAMSQEIP----------EIRLQTVVTG 228

Query: 224 LQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYT 283
           +  S + V V  +DG  ++A+ VI++  +   +   I F P LP+ +   IE+       
Sbjct: 229 IDQSGDVVNVTVKDGHAFQAHSVIVATPMNTWRR--IVFTPALPERRRSVIEEGHGGQGL 286

Query: 284 KIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEA 343
           KI +                I       + T + + E     S  L+V  T+      + 
Sbjct: 287 KILIHVRGAEAG--------IECVGDGIFPTLYDYCE--VSESERLLVAFTDSG--SFDP 334

Query: 344 QPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRA 403
                     +  L ++          I    W  +    G +    +   +++   +  
Sbjct: 335 TDIGAVKDAVLYYLPEV------EVLGIDYHDWIADPLFEGPWVAPRVGQFSRVHKELGE 388

Query: 404 PVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDN 445
           P   I F G   S  F GY+ G          A++      +
Sbjct: 389 PAGRIHFVGSDVSLEFPGYIEGALETAECAVNAILHSHHHHH 430

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score =  266 bits (681), Expect = 1e-83
 Identities = 76/473 (16%), Positives = 151/473 (31%), Gaps = 59/473 (12%)

Query: 9   VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGG 68
           VI+IG G  G++A + L   G    L+LEA DRIGGR  +    G   E+G  W+     
Sbjct: 42  VIVIGGGYCGLTATRDLTVAGF-KTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHW--- 97

Query: 69  KESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNL 128
              + VW   ++  +    S   N    +     +  P+     +++   E   + L   
Sbjct: 98  -HQSHVWREITRYKMHNALSPSFNFSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKF 156

Query: 129 EATNSNIGEVIKAATELPSSPKTPLEL----------------------AIDFILHDFEM 166
              +   G  +              +                       +++  +     
Sbjct: 157 TNVDGTNGRTVLPFPHDMFYVPEFRKYDEMSYSERIDQIRDELSLNERSSLEAFILLCSG 216

Query: 167 AEVEPIS-----TYVDFGEREFLVADER--------GYAHLLYKMAEEFLSTSDGKILDN 213
             +E  S      +       +    +         G +    +  EE            
Sbjct: 217 GTLENSSFGEFLHWWAMSGYTYQGCMDCLMSYKFKDGQSAFARRFWEEA-----AGTGRL 271

Query: 214 RLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEA 273
                  VR + + R+   V   DG  + A  V+ +  + VL +  I F P L   +  A
Sbjct: 272 GYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLST--IQFSPALSTERISA 329

Query: 274 IEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTL 333
           ++   V + TK+  +   K      G    I     +  Y      +   P  N  +V  
Sbjct: 330 MQAGHVSMCTKVHAEVDNKDMRSWTG----IAYPFNKLCYAIG---DGTTPAGNTHLVCF 382

Query: 334 TNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIIS 393
            N           +E ++E ++ +  +  P       ++   W  + F +G++       
Sbjct: 383 GNS----ANHIQPDEDVRETLKAVGQLA-PGTFGVKRLVFHNWVKDEFAKGAWFFSRPGM 437

Query: 394 DNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNE 446
            ++ +  +R    G+ F     +  +  ++ G    G    + V+E++    E
Sbjct: 438 VSECLQGLREKHGGVVFANSDWALGWRSFIDGAIEEGTRAARVVLEELGTKRE 490

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score =  262 bits (671), Expect = 4e-82
 Identities = 92/469 (19%), Positives = 181/469 (38%), Gaps = 40/469 (8%)

Query: 3   STSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKF--GGVSVELGA 60
           +++   V+I+GAG++G+SA  +LA  G   + +LEAS+R GGRVR  +    G    LG 
Sbjct: 30  TSNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASERPGGRVRTYRNEEAGWYANLGP 88

Query: 61  GWIAGVGGKESNPVWELASKSGLRT--CFSDYTNARY---NIYDRSGKIIPSGVAADSYK 115
             +     ++   V E   K  LR      +  NA Y   NI  + G++           
Sbjct: 89  MRL----PEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPV 144

Query: 116 KAVESAIANLKNLEATNSNIGEVIKAATELP-------SSPKTPLELAIDF------ILH 162
           K  E+  +  +  E +   + E +K              S K  L    D       ++ 
Sbjct: 145 KPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIG 204

Query: 163 DFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVR 222
           D    +     ++++  + + + A E+ +  ++  M +  L T+  + + +++  N  V 
Sbjct: 205 DLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDK--LPTAMYRDIQDKVHFNAQVI 262

Query: 223 ELQHSRNGVTV----KTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCD 278
           ++Q +   VTV     +++     A+YVI+  +   ++   I F PPL   K  A+    
Sbjct: 263 KIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRL--IKFNPPLLPKKAHALRSVH 320

Query: 279 VMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGES 338
               TKIFL    KFW                 +  +  H  N   G  +++      ++
Sbjct: 321 YRSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYPNH--NFTNGVGVIIAYGIGDDA 378

Query: 339 KRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVP----RWWNNRFQRGSYSNYPIISD 394
              +A   ++        L  +      +      P    +W  +++  G  + +     
Sbjct: 379 NFFQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGITTFTPYQF 438

Query: 395 NQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRK 443
               + + A    I+F GE+T++  +G++     +G+   + V      
Sbjct: 439 QHFSDPLTASQGRIYFAGEYTAQ-AHGWIDSTIKSGLRAARDVNLASEN 486

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score =  244 bits (625), Expect = 2e-75
 Identities = 69/481 (14%), Positives = 154/481 (32%), Gaps = 53/481 (11%)

Query: 9   VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGA-------- 60
           V+++G G +G+ +   L + G   + +LEA  R GGRV   + G    +L          
Sbjct: 14  VVVLGGGPAGLCSAFELQKAGY-KVTVLEARTRPGGRVWTARGGSEETDLSGETQKCTFS 72

Query: 61  -GWIAGVGG---KESNPVWELASKSGLRTC-FSDYTNARYNIYD----RSGKIIP----- 106
            G    VG     +S+   +   + G+    F +     +  Y      SG+ +      
Sbjct: 73  EGHFYNVGATRIPQSHITLDYCRELGVEIQGFGNQNANTFVNYQSDTSLSGQSVTYRAAK 132

Query: 107 ---SGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHD 163
               G  ++  KKA +    +          + E +    +L    +        +    
Sbjct: 133 ADTFGYMSELLKKATDQGALDQVLSREDKDALSEFLSDFGDLSDDGRYLGSSRRGYDSEP 192

Query: 164 FEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDG----------KILDN 213
                           E               Y  A    +   G          +I  +
Sbjct: 193 GAGLNFGTEKKPFAMQEVIRSGIGRNFSFDFGYDQAMMMFTPVGGMDRIYYAFQDRIGTD 252

Query: 214 RLKLNKVVRELQHSRNGVTVKTEDG---CVYEANYVILSASIGVLQSDLISFKPPLPKWK 270
            +     V  +++   GVTV+   G       A+Y I +    ++       +  LP   
Sbjct: 253 NIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIPPHLVG----RLQNNLPGDV 308

Query: 271 TEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILV 330
             A++        K+ +++  ++W           ++  +         ++      ++V
Sbjct: 309 LTALKAAKPSSSGKLGIEYSRRWWETEDRIYGGA-SNTDKDISQIMFPYDHYNSDRGVVV 367

Query: 331 VTLTNGE-SKRVEAQPDEETLKEAMEVLQDMFGPDI-PNATDILVPRWWNNRFQRGSYSN 388
              ++G+  +  E+    + L +A+    ++ G     + +      W   ++   +++N
Sbjct: 368 AYYSSGKRQEAFESLTHRQRLAKAIAEGSEIHGEKYTRDISSSFSGSWRRTKYSESAWAN 427

Query: 389 YPIISDNQ------LVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIR 442
           +     +           +  PV  I+F G+H S     + HG   +  D    + E++ 
Sbjct: 428 WAGSGGSHGGAATPEYEKLLEPVDKIYFAGDHLS-NAIAWQHGALTSARDVVTHIHERVA 486

Query: 443 K 443
           +
Sbjct: 487 Q 487

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662

 Score =  216 bits (551), Expect = 3e-63
 Identities = 78/352 (22%), Positives = 139/352 (39%), Gaps = 53/352 (15%)

Query: 127 NLEATNSNIGEVIKAATELPSS---PKTPLELAIDFILHDFEMAEVEPIST--------Y 175
            L  T   + E ++     P S     +     +D+   + E A   P+ST         
Sbjct: 325 ELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQD 384

Query: 176 VDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTV-- 233
            DF      +    GY+ +   +AE              +KLN  VR+++++ +G  V  
Sbjct: 385 DDFEFTGSHLTVRNGYSCVPVALAEGL-----------DIKLNTAVRQVRYTASGCEVIA 433

Query: 234 ----KTEDGCVYEANYVILSASIGVL--QSDLISFKPPLPKWKTEAIEKCDVMVYTKIFL 287
                T    +Y+ + V+ +  +GVL  Q   + F PPLP+WKT A+++       K+ L
Sbjct: 434 VNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVL 493

Query: 288 KFPCKFWPCSPGKEFFIYAHE---RRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQ 344
            F   FW   P    F +       RG    + ++      + IL+  +    +  +E  
Sbjct: 494 CFDRVFWD--PSVNLFGHVGSTTASRGELFLFWNLY----KAPILLALVAGEAAGIMENI 547

Query: 345 PDEETLKEAMEVLQDMFGPD-IPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRA 403
            D+  +   + +L+ +FG   +P   + +V RW  + + RGSYS     S     + +  
Sbjct: 548 SDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQ 607

Query: 404 PVAG-------------IFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIR 442
           P+               +FF GEHT   +   VHG  L+G+     + ++  
Sbjct: 608 PITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFL 659

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662

 Score =  100 bits (250), Expect = 1e-22
 Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 7/107 (6%)

Query: 1   MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGA 60
           + +     VIIIG+GVSG++A + L   G+ D+ +LEA DR+GGRV   + G    +LGA
Sbjct: 102 LPTKKTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEARDRVGGRVATFRKGNYVADLGA 160

Query: 61  GWIAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPS 107
             + G+GG   NP+  ++ +  +             +Y+ +G+ +P 
Sbjct: 161 MVVTGLGG---NPMAVVSKQVNMELAKIKQKCP---LYEANGQAVPK 201

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score =  219 bits (559), Expect = 3e-63
 Identities = 79/368 (21%), Positives = 143/368 (38%), Gaps = 53/368 (14%)

Query: 112 DSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSP---KTPLELAIDFILHDFEMAE 168
            S  + + +       L  T   + E ++     P S     +     +D+   + E A 
Sbjct: 481 KSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFAN 540

Query: 169 VEPIST--------YVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKV 220
             P+ST          DF      +    GY+ +   +AE              +KLN  
Sbjct: 541 ATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGL-----------DIKLNTA 589

Query: 221 VRELQHSRNGVTV------KTEDGCVYEANYVILSASIGVL--QSDLISFKPPLPKWKTE 272
           VR+++++ +G  V       T    +Y+ + V+ +  +GVL  Q   + F PPLP+WKT 
Sbjct: 590 VRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTS 649

Query: 273 AIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHE---RRGYYTFWQHMENAYPGSNIL 329
           A+++       K+ L F   FW   P    F +       RG    + ++      + IL
Sbjct: 650 AVQRMGFGNLNKVVLCFDRVFWD--PSVNLFGHVGSTTASRGELFLFWNLY----KAPIL 703

Query: 330 VVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPD-IPNATDILVPRWWNNRFQRGSYSN 388
           +  +    +  +E   D+  +   + +L+ +FG   +P   + +V RW  + + RGSYS 
Sbjct: 704 LALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSY 763

Query: 389 YPIISDNQLVNSIRAPVAG-------------IFFTGEHTSERFNGYVHGGYLAGIDTGK 435
               S     + +  P+               +FF GEHT   +   VHG  L+G+    
Sbjct: 764 VAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAG 823

Query: 436 AVVEKIRK 443
            + ++   
Sbjct: 824 RIADQFLG 831

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score =  100 bits (249), Expect = 1e-22
 Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 7/105 (6%)

Query: 3   STSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGW 62
           +     VIIIG+GVSG++A + L   G+ D+ +LEA DR+GGRV   + G    +LGA  
Sbjct: 275 TKKTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEARDRVGGRVATFRKGNYVADLGAMV 333

Query: 63  IAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPS 107
           + G+GG   NP+  ++ +  +             +Y+ +G+ +P 
Sbjct: 334 VTGLGG---NPMAVVSKQVNMELAKIKQKCP---LYEANGQAVPK 372

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score =  124 bits (314), Expect = 1e-31
 Identities = 76/469 (16%), Positives = 147/469 (31%), Gaps = 75/469 (15%)

Query: 1   MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGA 60
           M  +  S + IIGAG +G++AG  L + G  D  ILE +D +GG+  +  + G   E+GA
Sbjct: 1   MSISKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGA 60

Query: 61  GWIAGVGGKESNP----VWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKK 116
                       P    + E+  ++G +    D    R       G+I           +
Sbjct: 61  IMG--------VPSYDTIQEIMDRTGDKV---DGPKLRREFLHEDGEIYVPEKDPVRGPQ 109

Query: 117 AVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFI-LHDFEMAEVEPISTY 175
            V +A+  L  L AT     +      ++      P +   +F+ L+  E A    I+ +
Sbjct: 110 -VMAAVQKLGQLLATKYQGYDANGHYNKVHEDLMLPFD---EFLALNGCEAARDLWINPF 165

Query: 176 VDFGEREFL------VADERGYAHLLYKMAEEFLSTSDG---------KILDNRLKLNKV 220
             FG   F       V     +  ++     +  + +DG           L++  + N  
Sbjct: 166 TAFGYGHFDNVPAAYVLKYLDFVTMMSFAKGDLWTWADGTQAMFEHLNATLEHPAERNVD 225

Query: 221 VRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVM 280
           +  +      V + T D    E++ ++L+  +                 + E   K    
Sbjct: 226 ITRITREDGKVHIHTTDWDR-ESDVLVLTVPLEKFLDYS-----DADDDEREYFSKIIHQ 279

Query: 281 VYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTL-TNGESK 339
            Y               P    ++  + R           + +      ++T        
Sbjct: 280 QYMVDACLVKEY-----PTISGYVPDNMRPERLGHVMVYYHRWADDPHQIITTYLLRNHP 334

Query: 340 RVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWW--NNRF-----QRGSYSNYPII 392
               +  EE  +  ++ ++    P       I+  + W           + G Y     +
Sbjct: 335 DYADKTQEECRQMVLDDMETFGHP----VEKIIEEQTWYYFPHVSSEDYKAGWYEKVEGM 390

Query: 393 SDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKI 441
              Q   +        F+ GE  S        G +       K +V + 
Sbjct: 391 ---QGRRN-------TFYAGEIMS-------FGNFDEVCHYSKDLVTRF 422

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score =  100 bits (250), Expect = 7e-23
 Identities = 77/484 (15%), Positives = 136/484 (28%), Gaps = 68/484 (14%)

Query: 1   MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGA 60
           M  T+   V ++G G+SG++    L   G  D ++LE+S R+GG V      G  VE G 
Sbjct: 11  MPRTTGMNVAVVGGGISGLAVAHHLRSRGT-DAVLLESSARLGGAVGTHALAGYLVEQGP 69

Query: 61  GWIAGVGGKESNPVWELASKSGL--RTCFSDYTNARYNIYDR---------SGKIIPSGV 109
                           LA+   L  R   +D    R  +Y R             + S +
Sbjct: 70  NSFLDREP----ATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDI 125

Query: 110 AADSYKKAVESAIANLKNLEATNSNIGEVIKA--ATELPSSPKTPL----------ELAI 157
                +  V   + + +  E  + ++    +              +          +L++
Sbjct: 126 LPLGARLRVAGELFSRRAPEGVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSV 185

Query: 158 DFILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDG--------- 208
                     E E  S  +     +         A    K++    +   G         
Sbjct: 186 AATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVLIDALA 245

Query: 209 KILDNRLKLNKVVRELQHSRNGVTVKTEDGC---VYEANYVILSASIGVLQSDLISFKPP 265
             L +   +   V  L     G  +  E+           V+L+A        L     P
Sbjct: 246 ASLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLL----RP 301

Query: 266 LPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGY----YTFWQHMEN 321
           L       +          + L F     P   G  F + A E+R      +        
Sbjct: 302 LDDALAALVAGIAYAPIAVVHLGFDAGTLPAPDGFGFLVPAEEQRRMLGAIHASTTFPFR 361

Query: 322 AYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRF 381
           A  G  +    +       +  Q ++     A E L+ + G      +   V RW     
Sbjct: 362 AEGGRVLYSCMVGGARQPGLVEQDEDALAALAREELKALAGVT-ARPSFTRVFRW----- 415

Query: 382 QRGSYSNYPIISDNQLVNSIRAPVA---GIFFTGEHTSERFNGYVHG-GYLAGIDTGKAV 437
                  Y  +   + V +I A +    G+   G            G G    I     +
Sbjct: 416 -PLGIPQYN-LGHLERVAAIDAALQRLPGLHLIG--------NAYKGVGLNDCIRNAAQL 465

Query: 438 VEKI 441
            + +
Sbjct: 466 ADAL 469

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 96.9 bits (241), Expect = 1e-21
 Identities = 82/497 (16%), Positives = 162/497 (32%), Gaps = 92/497 (18%)

Query: 3   STSRSPVIIIGAGVSGISAGKILAENGIE-----DILILEASDRIGGRVRNEKFGGVSVE 57
           S  +  V+IIG G++G++A   + +   E     ++ ++EAS R+GG+++  K  G  +E
Sbjct: 2   SDGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIE 61

Query: 58  LGAGWIAGVGGKESNPVWELASKSGLR-TCFSDYTNARYNIYDRSGKIIPSGVAADSYKK 116
            G                +L    GL     ++ T   Y + +R+   +P G        
Sbjct: 62  RGPDSFLERKKS----APQLVKDLGLEHLLVNNATGQSYVLVNRTLHPMPKG-------- 109

Query: 117 AVESAIANLKNLEATN-SNIGEVIKAATELPSSPKTPL--ELAIDFILHDF--EMAE--V 169
           AV      +    +T   ++    +AA +           +   +F       E+ E  +
Sbjct: 110 AVMGIPTKIAPFVSTGLFSLSGKARAAMDFILPASKTKDDQSLGEFFRRRVGDEVVENLI 169

Query: 170 EPISTYVDFGERE---------FLVADERGYAHLLYKM----------------AEEFLS 204
           EP+ + +  G+ +              E+ +  L+  M                  +F +
Sbjct: 170 EPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQLTAKKQGQFQT 229

Query: 205 TSDG----------KILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV 254
            S G          ++   ++     V +L HS +  +++ ++G   +A+ VI++A    
Sbjct: 230 LSTGLQTLVEEIEKQLKLTKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPHKA 289

Query: 255 LQSDLISFKPPLPKWKTEAIEKCDVMVYTKIF-----LKFPCKFWPCSPGKEFFIYAHER 309
               L            + +    V      F                     F      
Sbjct: 290 AAGML---SELPAISHLKNMHSTSVANVALGFPEGSVQMEHEGTGFVISRNSDFAITACT 346

Query: 310 RGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNAT 369
              +T  +    A  G  +L   +     + +    D + +   +E L+ +   +     
Sbjct: 347 ---WTNKKWPHAAPEGKTLLRAYVGKAGDESIVDLSDNDIINIVLEDLKKVMNIN-GEPE 402

Query: 370 DILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVA----GIFFTGEHTSERFNGYVHG 425
              V RW        S   Y  +   Q +  +R  +A    G++ TG            G
Sbjct: 403 MTCVTRW------HESMPQYH-VGHKQRIKELREALASAYPGVYMTG--------ASFEG 447

Query: 426 GYLAG-IDTGKAVVEKI 441
             +   ID GKA V   
Sbjct: 448 VGIPDCIDQGKAAVSDA 464

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 90.5 bits (224), Expect = 1e-19
 Identities = 77/502 (15%), Positives = 160/502 (31%), Gaps = 91/502 (18%)

Query: 9   VIIIGAGVSGISAGKILAENGIE-DILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVG 67
           ++I+G G++G++A         + +I +LEA +R+GG+V   +  G ++E G        
Sbjct: 7   LVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGPDSYVARK 66

Query: 68  GKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKN 127
                 + +L    GL         ++  I D  G + P        K AV     +L  
Sbjct: 67  H----ILTDLIEAIGLGEKLVRNNTSQAFILDT-GGLHPIP------KGAVMGIPTDLDL 115

Query: 128 LEATN-SNIGEVIKAATELPSSPKTPLELAIDFILHDF-------EMAE--VEPISTYVD 177
              T      E  + A  L     +      D  L ++        + E  +EP+ + + 
Sbjct: 116 FRQTTLLTEEEKQEVADLLLHPSDSLRIPEQDIPLGEYLRPRLGDALVEKLIEPLLSGIY 175

Query: 178 FGEREFLVAD---------ERGYAHLLYKMA-------------------EEFLSTSDG- 208
            G  + +            E+    L   M                     +FLS   G 
Sbjct: 176 AGNIDQMSTFATYPQFVANEQKAGSLFEGMRLMRPLDQLPQTPQTTIKATGQFLSLETGL 235

Query: 209 ---------KILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDL 259
                     +  + ++L   +  +        +KT+ G    A+YV+L+         +
Sbjct: 236 ESLIERLEEVLERSEIRLETPLLAISREDGRYRLKTDHG-PEYADYVLLTIPH----PQV 290

Query: 260 ISFKPPLPKWKTEAIEKCDVMVYTKIFLK----FPCKFWPCSPGKEFFIYAHERRGYYTF 315
           +   P     + E +        T IF +               +  +            
Sbjct: 291 VQLLPDAHLPELEQLTTHSTATVTMIFDQQQSLPIEGTGFVVNRRAPY----SITACTAI 346

Query: 316 WQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPR 375
            Q   ++ P   +L   +    +  +  + DE   +  ++ L+ + G  +     +++ R
Sbjct: 347 DQKWNHSAPDHTVLRAFVGRPGNDHLVHESDEVLQQAVLQDLEKICGRTLE-PKQVIISR 405

Query: 376 WWNN--RFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHG-GYLAGID 432
             +    +  G       + +      + A   GI+  G            G G    + 
Sbjct: 406 LMDGLPAYTVGHADRIQRVRE-----EVLAQYPGIYLAG--------LAYDGVGLPDCVA 452

Query: 433 TGKAVVEKIRKDNERNNSETQN 454
           + K ++E I  + + +  E+ N
Sbjct: 453 SAKTMIESIELE-QSHTDESVN 473

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 89.0 bits (220), Expect = 4e-19
 Identities = 79/525 (15%), Positives = 170/525 (32%), Gaps = 105/525 (20%)

Query: 2   DSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAG 61
             +S   V +IGAGVSG++A   L  +G+ ++ + EA  + GG++R+    G+  + GA 
Sbjct: 9   KHSSAKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAEGKAGGKLRSVSQDGLIWDEGAN 67

Query: 62  WIAGVGGKESNPVWELASKSGLRTC--FSDYTNARYNIYDRSGKIIPSGVAADSYKKAVE 119
            +    G     V  L    GLR    F    N RY   + +  ++PS          ++
Sbjct: 68  TMTESEG----DVTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNP--------ID 115

Query: 120 SAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDF--EMAE--VEPISTY 175
              +N  +  +    + E I    +  S      E    F    F  E+ +  ++P    
Sbjct: 116 LIKSNFLSTGSKLQMLLEPILWKNKKLSQVSDSHESVSGFFQRHFGKEVVDYLIDPFVAG 175

Query: 176 VDFGER----------EFLVADERGYAHLLYKMAEEFLSTSDGK---------------- 209
              G              L   E+ +  ++       LS  + K                
Sbjct: 176 T-CGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRG 234

Query: 210 ------------------ILDNRLKLNKVVRELQHSRNG--------VTVKTEDGCVYE- 242
                             + ++ L+LN  V EL  S           +   +      E 
Sbjct: 235 SFSFLGGMQTLTDAICKDLREDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEE 294

Query: 243 --ANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSP-G 299
              + VI++A +  ++S  +        +    I + D +  + +   F  +       G
Sbjct: 295 ESFDAVIMTAPLCDVKS--MKIAKRGNPFLLNFIPEVDYVPLSVVITTFKRENVKYPLEG 352

Query: 300 KEFFIYAHERRGY-------YTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKE 352
               + + E++         ++     + A     +    +    ++ +      E  + 
Sbjct: 353 FGVLVPSKEQQHGLKTLGTLFSSMMFPDRAPNNVYLYTTFVGGSRNRELAKASRTELKEI 412

Query: 353 AMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVA---GIF 409
               L+ + G +    T +    W        ++  Y    D  ++++I        G+F
Sbjct: 413 VTSDLKQLLGAE-GEPTYVNHLYW------SKAFPLYGHNYD-SVLDAIDKMEKNLPGLF 464

Query: 410 FTGEHTSERFNGYVHGGYLAG-IDTGKAVVEKIRKDNERNNSETQ 453
           + G         +  G  +   + +G    + +    E  +++++
Sbjct: 465 YAG--------NHRGGLSVGKALSSGCNAADLVISYLESVSTDSK 501

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 85.7 bits (211), Expect = 5e-18
 Identities = 58/480 (12%), Positives = 129/480 (26%), Gaps = 53/480 (11%)

Query: 1   MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEK-FGGVSVELG 59
           M       ++IIGAG +G+ A   L E G ++  + E +D  GG  R+     G + +LG
Sbjct: 4   MAELLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLG 63

Query: 60  AGWIAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAA------DS 113
              I            ++   +     ++      +          P           D 
Sbjct: 64  GHVIFS----HYQYFDDVMDWAVQG--WNVLQRESWVWVRGRWVPYPFQNNIHRLPEQDR 117

Query: 114 YKKAVESAIANLKNLEATNSNIGEVI-----KAATELPSSPKT-------PLELAIDFIL 161
            +   E   ++ +      +N  E       +   ++   P         P  ++ +++ 
Sbjct: 118 KRCLDELVRSHARTYTEPPNNFEESFTRQFGEGIADIFMRPYNFKVWAVPPCLMSTEWVE 177

Query: 162 HDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVV 221
                 ++E I   +     +        +                 K+   +L  N   
Sbjct: 178 ERVAPVDLERIRRNIQENRDDLGWGPNATFRFPQRGGTGIIYQAIKEKLPSEKLTFNSGF 237

Query: 222 RELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMV 281
           + +    +  T+   +G V   +Y+I +     L                   +K     
Sbjct: 238 QAIAIDADAKTITFSNGEVVSYDYLISTVPFDNLLRMTKGTGFKGYDEWPAIADKMVYSS 297

Query: 282 YTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGE--SK 339
              I +       P       ++Y  E    +       N    +          E    
Sbjct: 298 TNVIGIGVKGTPPPH-LKTACWLYFPEDTSPFYRATVFSNYSKYNVPEGHWSLMLEVSES 356

Query: 340 RVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDN--QL 397
           + +       +++ +          +     +     W+ R ++G    YP        L
Sbjct: 357 KYKPVNHSTLIEDCIVGCLASNL--LLPEDLL--VSKWHYRIEKG----YPTPFIGRNNL 408

Query: 398 VNSIRAPVA--GIFFTGEHTSERFNGYVHGGYLAG-----IDTGKAVVEKIRKDNERNNS 450
           +   +  +    I+  G     RF  +    Y  G        G   ++ +        +
Sbjct: 409 LEKAQPELMSRCIYSRG-----RFGAW---RYEVGNQDHSFMQGVEAIDHVLGLATEETT 460

>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 181

 Score = 80.3 bits (198), Expect = 9e-18
 Identities = 30/168 (17%), Positives = 55/168 (32%), Gaps = 10/168 (5%)

Query: 309 RRGYYTFWQHMENAYPGSNILVVTLTNGE-SKRVEAQPDEETLKEAMEVLQDMFGPDIPN 367
           R  YY              +++   +  + + R ++  D E    A+E LQ + G  I  
Sbjct: 21  RFMYYPSHPVPG---TQGGVVLAAYSWSDDAARWDSFDDAERYGYALENLQSVHGRRIEV 77

Query: 368 --ATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHG 425
                     W  + +  G  + Y           +  P   ++F GEH S   + ++ G
Sbjct: 78  FYTGAGQTQSWLRDPYACGEAAVYTPHQMTAFHLDVVRPEGPVYFAGEHVS-LKHAWIEG 136

Query: 426 GYLAGIDTGKAVVEKIRKDNERNNSETQNFLLEPLLALTLTQTEAMSS 473
                +    AV E    D     +  +        A    + EA++S
Sbjct: 137 AVETAVRAAIAVNEAPVGDTGVTAAAGR---RGAAAATEPMREEALTS 181

>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 130

 Score = 63.8 bits (155), Expect = 1e-12
 Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 7/119 (5%)

Query: 240 VYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPC--- 296
            +  +  I++     L+   +   PP    K  A+ +      TK+ L+F  ++W     
Sbjct: 5   TWTGDLAIVTIPFSSLRF--VKVTPPFSYKKRRAVIETHYDQATKVLLEFSRRWWEFTEA 62

Query: 297 SPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAME 355
              +E    A     YY  W   +     +  L  ++ N  +  + A P  +  +   E
Sbjct: 63  DWKRELDAIAPGLYDYYQQWGEDDA--EAALALPQSVRNLPTGLLGAHPSVDESRIGEE 119

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376

 Score = 65.8 bits (159), Expect = 8e-12
 Identities = 33/170 (19%), Positives = 57/170 (33%), Gaps = 18/170 (10%)

Query: 9   VIIIGAGVSGISAGKILAENGIEDILILEA-SDRIGGRVRNEKFG----------GVSVE 57
           ++I+GAG++G+ AG +L   G  D+ ILEA ++R+GGR++                   E
Sbjct: 47  ILIVGAGIAGLVAGDLLTRAGH-DVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAE 105

Query: 58  LGAGWIAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAA--DSYK 115
            GA  +             L  K GL+       +      ++   + P    +  D   
Sbjct: 106 AGAMRL----PSFHPLTLALIDKLGLKRRLFFNVDIDPQTGNQDAPVPPVFYKSFKDGKT 161

Query: 116 KAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFE 165
               +     K  +  N       +           P  +   F L   E
Sbjct: 162 WTNGAPSPEFKEPDKRNHTWIRTNREQVRRAQYATDPSSINEGFHLTGCE 211

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477

 Score = 65.9 bits (160), Expect = 1e-11
 Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 9/109 (8%)

Query: 9   VIIIGAGVSGISAGKILAENGIE-DILILEASDRIGGRVRNEKF-GGVSVELGAGWIAGV 66
           V+++G G+SG++A   L+       ++++E+S+R+GG +R+ +   G   ELG   I   
Sbjct: 5   VVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRP- 63

Query: 67  GGKESNPVWELASKSGLR----TCFSDYTNARYNIYDRSGKI--IPSGV 109
            G        L S+ GL         D+  A+       G +  +P+G+
Sbjct: 64  AGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPTGL 112

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 63.4 bits (153), Expect = 6e-11
 Identities = 61/484 (12%), Positives = 138/484 (28%), Gaps = 72/484 (14%)

Query: 9   VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR-NEKFGGVSVELGAGWIAGVG 67
           V++IGAG +G+ A K L +      +I+++++  GG    +    G   ++G   I    
Sbjct: 13  VLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVIFS-- 70

Query: 68  GKESNPVWELASKSGLR-TCFSDYTNARYNIYDRSGKIIPSGVA-----ADSYKKAVESA 121
                   +   ++  +   +  +    Y          P          +   K ++  
Sbjct: 71  --HYKYFDDCLDEALPKEDDWYTHQRISYVRCQGQWVPYPFQNNISMLPKEEQVKCIDGM 128

Query: 122 I-----ANLKNLEATN------SNIGEVIKAATELPSSPKT----PLELAIDFILHDFEM 166
           I     A + N +           +G  I      P + K       ++   ++      
Sbjct: 129 IDAALEARVANTKPKTFDEWIVRMMGTGIADLFMRPYNFKVWAVPTTKMQCAWLGERVAA 188

Query: 167 AEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQH 226
             ++ ++T V  G+          +                  +   + +  +  +  + 
Sbjct: 189 PNLKAVTTNVILGKTAGNWGPNATFRFPARGGTGGIWIAVANTLPKEKTRFGEKGKVTKV 248

Query: 227 SRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKT---EAIEKCDVMVYT 283
           + N  TV  +DG       ++ + ++  L ++ ++ +  +   K     +     V V  
Sbjct: 249 NANNKTVTLQDGTTIGYKKLVSTMAVDFL-AEAMNDQELVGLTKQLFYSSTHVIGVGVRG 307

Query: 284 KIFLKFPCKFWPCSPGKEFFIY-----------------AHERRGYYTFWQHMENAYPGS 326
               +   K W   P      Y                 A             ++     
Sbjct: 308 SRPERIGDKCWLYFPEDNCPFYRATIFSNYSPYNQPEASAALPTMQLADGSRPQSTEAKE 367

Query: 327 NILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSY 386
                 +       ++    E  L + ++ L +     +    +I     ++ RF  G  
Sbjct: 368 GPYWSIMLEVSESSMKPVNQETILADCIQGLVNTEM--LKPTDEI--VSTYHRRFDHG-- 421

Query: 387 SNYPIISDN--QLVNSIRAPVA--GIFFTGEHTSERFNGYVHGGYLAG-----IDTGKAV 437
             YP  +      +  I   +    I+  G     RF  +    Y  G        G   
Sbjct: 422 --YPTPTLEREGTLTQILPKLQDKDIWSRG-----RFGSWR---YEVGNQDHSFMLGVEA 471

Query: 438 VEKI 441
           V+ I
Sbjct: 472 VDNI 475

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 60.1 bits (146), Expect = 7e-10
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGA 60
           +++GAG+ G+ AG  LA NG  +I++LE S  IGGR  N  + G  +  GA
Sbjct: 3  AVVVGAGLGGLLAGAFLARNGH-EIIVLEKSAMIGGRFTNLPYKGFQLSTGA 53

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 29/250 (11%), Positives = 66/250 (26%), Gaps = 59/250 (23%)

Query: 214 RLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEA 273
           ++   K V E+      V   T D   Y  +  I +  +      LI  +    +   + 
Sbjct: 205 KILTRKEVVEINIEEKKVY--TRDNEEYSFDVAISNVGVRETV-KLIG-RDYFDRDYLKQ 260

Query: 274 IEKCDVMVYTK-IFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHM------ENAYPGS 326
           ++    +  ++ I         P       F         +    +         A  G 
Sbjct: 261 VDS---IEPSEGIKFNLAVPGEPRIGNTIVFTPG-LMINGF----NEPSALDKSLAREGY 312

Query: 327 NILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILV----PRWWNNRFQ 382
            +++  +       ++    ++ +++  E L ++F    P    +L          NR +
Sbjct: 313 TLIMAHMA------LKNGNVKKAIEKGWEELLEIF----PEGEPLLAQVYRDGNPVNRTR 362

Query: 383 RGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGID----TGKAVV 438
            G                I  P+  +   G                  +D         +
Sbjct: 363 AGL--------------HIEWPLNEVLVVG--------DGYRPPGGIEVDGIALGVMKAL 400

Query: 439 EKIRKDNERN 448
           EK+   +   
Sbjct: 401 EKLNLGSFSE 410

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 4/44 (9%)

Query: 1  MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44
          MDS     V++IG G SG+SAG  L  +G+   +IL+A    GG
Sbjct: 1  MDSV---DVVVIGGGQSGLSAGYFLRRSGL-SYVILDAEASPGG 40

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 65/476 (13%), Positives = 131/476 (27%), Gaps = 98/476 (20%)

Query: 9   VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVG- 67
            ++IGAG+ G+ +   L++ G  ++ + E     GGR  N  + G  +  GA  +   G 
Sbjct: 3   TVVIGAGLGGLLSAARLSKAGH-EVEVFERLPITGGRFTNLSYKGFQLSSGAFHMLPNGP 61

Query: 68  -------GKESNPVWELASKSG------LRTCFSDYTNARYNIYDRSGKIIPSGVAADSY 114
                   KE      +           L+    DY     +I       + S       
Sbjct: 62  GGPLACFLKEVEASVNIVRSEMTTVRVPLKKGNPDYVKGFKDISFNDFPSLLSYKDRMKI 121

Query: 115 KKAVESAIANLKNLEATNSNIGEVIK-------------AATELPSSPKTPLELAIDFIL 161
              + S   N  +  +  + I   +               A  L S      E+    I+
Sbjct: 122 ALLIVSTRKNRPSGSSLQAWIKSQVSDEWLIKFADSFCGWALSLKSDEVPVEEVF--EII 179

Query: 162 HDFEMAE-VEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKV 220
            +              + G +   + D       L  +         GKI        + 
Sbjct: 180 ENMYRFGGTG----IPEGGCKG--IIDA------LETVISAN----GGKI-----HTGQE 218

Query: 221 VRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKP---PLPKWKTEAIEKC 277
           V ++            D  +++A+ VI +                      +K     + 
Sbjct: 219 VSKILIENGKAAGIIADDRIHDADLVISNLGHAATAVLCSEALSKEADAAYFKMVGTLQP 278

Query: 278 DVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHM---ENAYPGSNILVVTLT 334
              +   +         P        +  + RR            E A PG ++ +    
Sbjct: 279 SAGIKICLAAD-----EPLVGHTGVLLTPYTRRINGVNEVTQADPELAPPGKHLTMCHQY 333

Query: 335 NGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATD-ILVPRWWNNRF--QRGSYSNYPI 391
                    + + E   E ++ +        P     +L+ + +++ +   R +    P 
Sbjct: 334 VAPENVKNLESEIEMGLEDLKEI-------FPGKRYEVLLIQSYHDEWPVNRAASGTDP- 385

Query: 392 ISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDT------GKAVVEKI 441
                       P +G++  G            G    GI+         +V+EK+
Sbjct: 386 --------GNETPFSGLYVVG--------DGAKGK--GGIEVEGVALGVMSVMEKV 423

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 2e-08
 Identities = 73/562 (12%), Positives = 141/562 (25%), Gaps = 225/562 (40%)

Query: 24  ILAENGIEDILI----LEASDRIGGRVRN------EKFGGVSVELGAGWIAGVGGKESNP 73
           IL++  I+ I++    +  + R+   + +      +KF    + +   ++      E   
Sbjct: 45  ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR- 103

Query: 74  VWELASKSGLRTCFSDYTN---------ARYNIYDR------------------------ 100
                  S +   + +  +         A+YN+  R                        
Sbjct: 104 -----QPSMMTRMYIEQRDRLYNDNQVFAKYNVS-RLQPYLKLRQALLELRPAKNVLIDG 157

Query: 101 ---SGKIIPSGVAADSYK-KAVESAIAN----------------LKNLEATNSNIGEVIK 140
              SGK   + VA D      V+  +                  L+ L+     I     
Sbjct: 158 VLGSGK---TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 141 AATELPSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYAH-LL---- 195
           + ++  S+ K  +      +                    R  L    + Y + LL    
Sbjct: 215 SRSDHSSNIKLRIHSIQAEL--------------------RRLLK--SKPYENCLLVLLN 252

Query: 196 ---YKMAEEF-------LSTSDGKILDNRLKLNKVVRELQHSRNGVTV-KTEDGCVYEAN 244
               K    F       L+T   ++ D           L H    +T  + +        
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS------- 305

Query: 245 YVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSP------ 298
             +L   +     DL    P          E                     +P      
Sbjct: 306 --LLLKYLDCRPQDL----PR---------EVLTT-----------------NPRRLSII 333

Query: 299 GKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLK--EAMEV 356
            +       +    +  W+H+             LT      +      E  K  + + V
Sbjct: 334 AESI----RDGLATWDNWKHVNCD---------KLTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 357 LQDMFGPDIPNATDILVPRWWN----------NRFQRGS----------YSNYPIISD-- 394
                   IP  T +L   W++          N+  + S           S   I  +  
Sbjct: 381 FPP--SAHIP--TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436

Query: 395 ----------NQLVNSIRAPVAGIFFTGEHTSERFNGYV--HGGY-LAGIDTGKAVVE-- 439
                       +V+    P    F + +      + Y   H G+ L  I+  + +    
Sbjct: 437 VKLENEYALHRSIVDHYNIPKT--FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494

Query: 440 -----------KIRKDNERNNS 450
                      KIR D+   N+
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNA 516

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 61/486 (12%), Positives = 121/486 (24%), Gaps = 168/486 (34%)

Query: 102 GKIIPSGVAADSYKKAVE-SAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFI 160
             I+   V  D++    +   + ++     +   I  +I +                  +
Sbjct: 19  KDILS--VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA---------VSGTLRL 67

Query: 161 LHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTS-------------- 206
              F     +       F E          Y  L+  +  E    S              
Sbjct: 68  ---FWTLLSKQEEMVQKFVEE----VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 207 -DGKILD----NR----LKLNKVVRELQHSRNGVTV-------KTEDGCVYEANYVILSA 250
            D ++      +R    LKL + + EL+ ++N V +       KT            ++ 
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKN-VLIDGVLGSGKT-----------WVAL 168

Query: 251 SIGVLQSDLISFKPPLP-KWKTEAIEKCD-----VMVYTKIFLKFPCKFW-----PCSPG 299
              V  S  +  K      W    ++ C+     + +  K+  +    +        +  
Sbjct: 169 D--VCLSYKVQCKMDFKIFWLN--LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 300 KEFFIYAHERRGYYTFWQHMENAY----------------PGSNILVVT--------LTN 335
                   E R       + EN                      IL+ T        L+ 
Sbjct: 225 LRIHSIQAELRRLLKSKPY-ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 336 GESKRVEAQPDEETL--KEAMEVLQDMFG---PDIPN-ATDILVP--------------- 374
             +  +       TL   E   +L         D+P        P               
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLA 342

Query: 375 RW--WNNRF-------------------QRGSYSNYPIISDNQLVNSIRAPVAGIFFTGE 413
            W  W +                      R  +    +   +   + I   +  + +   
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS--AH-IPTILLSLIWFDV 399

Query: 414 HTSERFNGYVHGGYLAGIDTGKAVVEKIRKDN--ERNNSETQNFLLEPLLALTLT-QTEA 470
             S+                   VV K+ K +  E+   E+   +  P + L L  + E 
Sbjct: 400 IKSDVMV----------------VVNKLHKYSLVEKQPKESTISI--PSIYLELKVKLEN 441

Query: 471 MSSLHK 476
             +LH+
Sbjct: 442 EYALHR 447

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 50.8 bits (121), Expect = 4e-07
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSV 56
           II+G+G+ G      L +     +L++E  + IGG    E   G+ +
Sbjct: 4  YIIVGSGLFGAVCANELKKLNK-KVLVIEKRNHIGGNAYTEDCEGIQI 50

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Length = 540

 Score = 50.6 bits (122), Expect = 7e-07
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 1  MDSTSRSP--VIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44
          M + +      ++IGAG  GI A   L        +  + +D  GG
Sbjct: 1  MTAQTTHTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGG 46

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score = 50.2 bits (120), Expect = 9e-07
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 8  PVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN 48
           V IIGAG +GI     L + GI D++ILE    +G   ++
Sbjct: 6  KVAIIGAGAAGIGMAITLKDFGITDVIILEK-GTVGHSFKH 45

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545

 Score = 48.0 bits (115), Expect = 5e-06
 Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 4/47 (8%)

Query: 1  MDSTSRSP---VIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44
          M + ++SP    ++IGAGV+GI    ++ + G+  +L +EA + +GG
Sbjct: 1  MSNRAKSPALDAVVIGAGVTGIYQAFLINQAGM-KVLGIEAGEDVGG 46

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447

 Score = 47.6 bits (113), Expect = 5e-06
 Identities = 22/102 (21%), Positives = 34/102 (33%), Gaps = 12/102 (11%)

Query: 1   MDSTSRSPVIIIGAGVSGISAGK-ILAENGIEDILILEASDRIGG----RVRNEKFGGVS 55
           M   +   + IIGAG SG+   K +LAE   + + + E     GG             V 
Sbjct: 1   MCLPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVP 60

Query: 56  VELGAGWIAGVGGKESNPVWELASKSGLRT-------CFSDY 90
                     + G  + PV+       L+T        + D 
Sbjct: 61  STNPILTTEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQ 102

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 47.4 bits (112), Expect = 6e-06
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEK 50
           +I+GAG +G    + LA +G   +LI++    IGG   +  
Sbjct: 32 YLIVGAGFAGSVLAERLASSGQ-RVLIVDRRPHIGGNAYDCY 72

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542

 Score = 47.2 bits (113), Expect = 8e-06
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44
          V+++GAG SG+ A   L E G   + ++E +  +GG
Sbjct: 19 VLVVGAGFSGLYALYRLRELGR-SVHVIETAGDVGG 53

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44
          V+++GAG++G+ A       G+  +   EA+  +GG
Sbjct: 24 VVVVGAGIAGLYAIHRFRSQGL-TVRAFEAASGVGG 58

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342

 Score = 46.3 bits (108), Expect = 1e-05
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 9  VIIIGAGVSGISAGKILAENGIED--ILILEASDRIGGRV---RNEKFGGVSVELGAGWI 63
          V+I+GAG++G     +L         + + + +D  GGR+    +      + +LGA +I
Sbjct: 4  VLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYI 63

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEK 50
          ++I+GAG SG   G+ LAE G   + I++  D IGG   + +
Sbjct: 6  ILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRDHIGGNSYDAR 46

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 14/47 (29%), Positives = 27/47 (57%)

Query: 1  MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47
          M + + + V+++GAG +G+SA   +++N    + I+E S   GG   
Sbjct: 34 MITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAW 80

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 44.4 bits (104), Expect = 5e-05
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 7/79 (8%)

Query: 1   MDSTSRSPVIIIGAGVSGISAGKILAENGIE-DILILEASDRIGGR--VRNEKFGGVSVE 57
           +D  + S VII+GAG SG+SA  ++A+N  +  + I+E+S   GG   +  + F  + + 
Sbjct: 60  LDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMR 119

Query: 58  LGAGWIAGVGGKESNPVWE 76
             A        +E    +E
Sbjct: 120 KPAHLF----LQELEIPYE 134

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* Length = 721

 Score = 44.9 bits (104), Expect = 5e-05
 Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 9   VIIIGAGVSGISAGKILAENGIE-------DILILEASDRIGGRVRNEKFGGVSVELGAG 61
           + I+G G  GI+A   L             D+ I EA        R          L AG
Sbjct: 59  IAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKVRGLKAG 118

Query: 62  WIAGVGGKESNP 73
            ++       +P
Sbjct: 119 RVSAALVHNGDP 130

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Length = 965

 Score = 44.9 bits (106), Expect = 6e-05
 Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 13/97 (13%)

Query: 9   VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGG 68
           V+++GAG +G++A +  + +G   +++L+     GG + +     +     + WI  V  
Sbjct: 131 VLVVGAGPAGLAAAREASRSG-ARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQV-- 187

Query: 69  KESNPVWELASKSGLR-----TCFSDYTNARYNIYDR 100
                  ELA           T F  Y         R
Sbjct: 188 -----TSELAEAEETTHLQRTTVFGSYDANYLIAAQR 219

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Length = 438

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 1  MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASD 40
          M  T  S ++I+GAG  G S    LA  G  ++ +L+   
Sbjct: 1  MAVTKSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYP 40

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 11/42 (26%), Positives = 23/42 (54%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEK 50
          + ++G+G  G++  + +A    + +L+LE    IGG   +E 
Sbjct: 10 LFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEA 51

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 5/40 (12%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEAS----DRIGG 44
          +I+IG G  G +    +A  G   +L+LE       +IG 
Sbjct: 10 LIVIGGGPGGSTLASFVAMRGH-RVLLLEREAFPRHQIGE 48

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 45/260 (17%), Positives = 79/260 (30%), Gaps = 66/260 (25%)

Query: 1   MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASD---------RIGGRVRNEKF 51
           M  +    V+++G G  G++    +AE G   +L+LE                  R +  
Sbjct: 1   MTESYD--VVVVGGGPVGLATAWQVAERGH-RVLVLERHTFFNENGGTSGAERHWRLQYT 57

Query: 52  GGVSVELGAGWIAGVGGKESNPVW-ELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVA 110
                 L           E+ P+W  L S+                +    G +      
Sbjct: 58  QEDLFRL---------TLETLPLWRALESRCE------------RRLIHEIGSLWFGDTD 96

Query: 111 ADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAEVE 170
             + +  +    A +  L        E +KA  ++               L       ++
Sbjct: 97  VVTNEGQISGTAAMMDKLSVRY----EWLKAT-DI-------ERRFGFRGLPRDYEGFLQ 144

Query: 171 PISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNG 230
           P       G       D RG    L+ +A+              L+  + V EL    +G
Sbjct: 145 PDG-----G-----TIDVRGTLAALFTLAQA---------AGATLRAGETVTELVPDADG 185

Query: 231 VTVKTEDGCVYEANYVILSA 250
           V+V T+ G  Y A  V+L+ 
Sbjct: 186 VSVTTDRG-TYRAGKVVLAC 204

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 19/66 (28%)

Query: 1  MDSTSRSP-----VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVS 55
          M + +++P       + G G +G++A   L +NG  D+ + E S  +             
Sbjct: 1  MANVNKTPGKTRRAEVAGGGFAGLTAAIALKQNGW-DVRLHEKSSELR------------ 47

Query: 56 VELGAG 61
             GAG
Sbjct: 48 -AFGAG 52

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 13/53 (24%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAG 61
          ++I GAG+ G+S    L + GI  + +LE+S  I               LG G
Sbjct: 7  ILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIR-------------PLGVG 46

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 9   VIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44
           + ++GAG + IS    LA  G  DI I E  + +GG
Sbjct: 190 IALLGAGPASISCASFLARLGYSDITIFEKQEYVGG 225

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 5/45 (11%)

Query: 3  STSRSPVIIIGAGVSGISAGKILAENGIEDILILEAS----DRIG 43
            +RS V IIG G +G  AG  L + G  D+ I E S     R+G
Sbjct: 20 HMTRSKVAIIGGGPAGSVAGLTLHKLGH-DVTIYERSAFPRYRVG 63

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504

 Score = 41.2 bits (96), Expect = 6e-04
 Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 2  DSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR 41
          D+    P ++IG G     +   L E G+   L+LE    
Sbjct: 1  DNGGYVPAVVIGTGYGAAVSALRLGEAGV-QTLMLEMGQL 39

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 3/44 (6%)

Query: 6  RSPVIIIGAGVSGISAGKILAENGIEDILILE--ASDRIGGRVR 47
          ++ V IIGAG SG+  G++L + GI D +ILE    D + GR+R
Sbjct: 2  KTQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQTPDYVLGRIR 44

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 5/40 (12%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEAS----DRIGG 44
          V++IGAG +G  A  ++ ++G   + I+E        IG 
Sbjct: 8  VLVIGAGPAGTVAASLVNKSGF-KVKIVEKQKFPRFVIGE 46

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 9   VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47
           V+I+GAG SG  A ++L E+G    L  + +++IGG + 
Sbjct: 392 VLIVGAGPSGSEAARVLMESGYTVHL-TDTAEKIGGHLN 429

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 41.0 bits (95), Expect = 8e-04
 Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 5/44 (11%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFG 52
          V+I+G+G  G +  + L   G   + + +     G      K G
Sbjct: 49 VVIVGSGPIGCTYARELVGAGY-KVAMFDI----GEIDSGLKIG 87

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	496
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	100.0
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	100.0
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	100.0
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	100.0
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	100.0
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	100.0
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	100.0
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	100.0
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	100.0
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	100.0
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	100.0
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	100.0
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	100.0
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	100.0
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	100.0
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	100.0
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	100.0
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	100.0
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	100.0
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	100.0
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	100.0
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	100.0
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	100.0
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	100.0
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.97
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	99.93
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	99.89
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	99.87
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	99.86
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.86
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	99.85
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	99.79
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	99.78
2e1m_C	181	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	99.78
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	99.78
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.55
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.48
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.46
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.44
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	99.41
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.41
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.41
3dme_A	369	Conserved exported protein; structural genomics, P	99.4
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.4
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.4
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.38
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.36
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.36
4hb9_A	412	Similarities with probable monooxygenase; flavin,	99.35
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.32
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.32
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.32
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.3
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.3
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.28
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.27
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.27
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.27
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.27
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.23
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.22
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.21
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.2
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.2
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.2
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.17
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.16
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.13
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.13
2e1m_B	130	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	99.13
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.13
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.13
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	99.12
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.11
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.1
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.1
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.1
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	99.1
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.08
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.06
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.05
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.05
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	99.04
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.04
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.03
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.02
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.02
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.02
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.0
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.0
3atr_A	453	Conserved archaeal protein; saturating double bond	98.99
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.98
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.96
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	98.96
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.92
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.92
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.89
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.88
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.88
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.87
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.86
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.86
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.86
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.85
4dna_A	463	Probable glutathione reductase; structural genomic	98.85
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.83
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.83
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.83
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.83
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.82
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.82
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.81
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.8
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.8
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.79
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.79
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.79
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.78
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.77
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.77
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.77
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.76
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.75
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.75
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.74
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.74
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.74
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.73
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.72
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.71
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.7
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.68
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.68
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.67
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.67
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.66
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.65
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.64
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.63
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.6
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.58
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.58
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.57
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.55
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.55
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.52
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.52
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.5
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.43
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.39
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.36
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.34
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.33
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.28
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.26
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.24
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.23
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.21
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.2
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.19
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.19
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.19
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.18
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.17
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.15
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.14
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.14
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.12
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.12
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.11
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.09
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.08
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.07
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.07
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.06
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.06
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.05
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.02
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.01
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.01
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.99
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.99
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.99
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.98
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.97
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.97
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.93
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.91
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.9
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.9
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.89
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.88
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.87
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.86
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.85
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.84
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.83
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.83
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.83
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.82
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.79
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.74
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.73
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.73
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.71
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.7
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.7
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.69
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.69
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.68
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.65
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.63
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.62
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.62
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.61
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	97.59
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.59
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.57
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.54
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.54
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.54
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.54
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.52
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.5
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.49
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.48
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.46
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.45
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.44
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.44
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.44
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.38
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.37
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.35
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.34
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.24
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.23
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.21
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.18
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.06
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.05
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	96.98
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	96.86
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	96.83
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	96.75
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.64
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	96.52
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	96.42
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.41
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	96.35
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.13
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.1
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.08
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	96.0
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	95.94
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	95.94
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.81
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	95.74
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	95.73
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.66
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	95.54
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	95.53
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.51
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	95.36
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	95.36
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.28
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	95.27
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	95.16
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	95.08
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.0
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	94.91
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	94.84
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	94.84
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	94.8
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	94.79
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	94.76
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	94.71
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	94.7
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	94.6
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	94.59
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	94.59
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	94.54
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	94.54
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	94.51
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	94.51
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	94.49
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	94.49
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	94.46
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	94.45
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.38
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	94.38
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	94.32
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	94.29
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	94.28
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	94.23
1fec_A	490	Trypanothione reductase; redox-active center, oxid	94.15
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	94.08
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	94.04
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	93.98
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	93.94
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	93.89
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	93.87
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	93.86
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	93.86
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	93.83
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	93.77
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	93.7
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	93.64
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	93.63
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	93.6
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	93.54
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	93.52
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	93.45
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	93.42
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	93.25
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	93.24
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	93.18
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	93.15
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	93.15
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	93.13
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	93.1
3r9u_A	315	Thioredoxin reductase; structural genomics, center	93.07
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	93.04
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	93.03
4dna_A	463	Probable glutathione reductase; structural genomic	92.92
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	92.92
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	92.84
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	92.76
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	92.75
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	92.71
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	92.7
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	92.69
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	92.65
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	92.65
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	92.56
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	92.54
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	92.42
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	92.36
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	92.29
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	92.26
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	92.2
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	92.19
3qha_A	296	Putative oxidoreductase; seattle structural genomi	92.18
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	92.14
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	92.13
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	92.12
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	92.12
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	92.06
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	92.05
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	92.03
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	91.99
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	91.94
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	91.94
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	91.9
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	91.86
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	91.85
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	91.8
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	91.79
3tl2_A	315	Malate dehydrogenase; center for structural genomi	91.69
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	91.63
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	91.62
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	91.56
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	91.52
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	91.41
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	91.37
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	91.33
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	91.28
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	91.24
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	91.23
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	91.2
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	91.18
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	91.16
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	91.15
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	91.14
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	91.13
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	91.12
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	91.07
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	91.05
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	91.04
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	91.01
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	91.0
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	91.0
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	90.97
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	90.96
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	90.95
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	90.95
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	90.93
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	90.86
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	90.81
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	90.78
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	90.73
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	90.7
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	90.67
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	90.66
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	90.64
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	90.64
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	90.57
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	90.5
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	90.5
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	90.41
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	90.38
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	90.36
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	90.34
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	90.34
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	90.34
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	90.3
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	90.28
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	90.22
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	90.1
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	90.08
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	89.96
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	89.96
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	89.93
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	89.86
4ezb_A	317	Uncharacterized conserved protein; structural geno	89.83
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	89.7
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	89.68
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	89.65
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	89.65
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	89.64
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	89.63
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	89.58
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	89.55
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	89.5
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	89.48
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	89.42
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	89.35
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	89.26
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	89.2
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	89.2
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	89.18
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	89.11
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	89.05
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	88.89
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	88.85
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	88.85
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	88.83
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	88.81
4g65_A	461	TRK system potassium uptake protein TRKA; structur	88.75
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	88.72
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	88.71
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	88.66
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	88.62
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	88.54
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	88.52
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	88.5
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	88.49
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	88.49
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	88.44
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	88.43
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	88.41
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	88.39
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	88.3
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	88.27
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	88.23
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	88.23
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	88.05
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	88.03
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	87.93
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	87.9
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	87.88
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	87.87
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	87.71
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	87.65
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	87.63
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	87.6
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	87.57
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	87.49
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	87.47
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	87.43
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	87.25
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	87.21
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	87.14
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	87.11
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	87.07
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	87.06
4fk1_A	304	Putative thioredoxin reductase; structural genomic	87.05
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	87.01
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	86.72
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	86.71
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	86.63
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	86.61
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	86.48
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	86.31
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	86.31
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	86.26
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	86.16
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	86.14
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	86.12
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	86.1
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	86.1
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	85.88
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	85.74
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	85.61
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	85.61
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	85.33
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	85.32
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	85.12
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	85.11
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	85.06

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=100.00  E-value=4.7e-51  Score=417.32  Aligned_cols=443  Identities=49%  Similarity=0.896  Sum_probs=328.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHh-cCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASK-SGL   83 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~-lgl   83 (496)
                      ..+||+|||||++||+||+.|+++|+.+|+|+|+++++||++.+...+|..+|.|++++++..+...+++++++++ +|+
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~lgl   82 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKL   82 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETTEEEESSCCEEEEESSSSCCTHHHHHHTTSCC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceeecccCCcEEeeCCeEEeccCCCCCCHHHHHHHhhcCC
Confidence            5689999999999999999999999723999999999999999999999999999999985332356789999999 999


Q ss_pred             ccccccCCCcceEEEcCCCcccChhHHHHHHHHH------HHHHHHHhccccccchhH--HHHHHhhhcCCCCCCChHHH
Q 010995           84 RTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKA------VESAIANLKNLEATNSNI--GEVIKAATELPSSPKTPLEL  155 (496)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  155 (496)
                      ......+......++..+|..++.+.....+...      .+............+.+.  .+++...  ....+..+.+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~--~~~~~~~~~~~  160 (472)
T 1b37_A           83 RNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKLSATLHASGRDDMSILAMQRLNEH--QPNGPATPVDM  160 (472)
T ss_dssp             CEEECCCTTGGGCEECSSSSBCCHHHHHHHHHHHHHHHHHHHHHHHTSCTTCTTCCBHHHHHHHHHT--SSSSCCSHHHH
T ss_pred             ceeeccCccccceeEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHhhh--cccccccHHHH
Confidence            8765444443344666788877755443332221      111111111111122222  2233321  11112334455


Q ss_pred             HHHHHHhhcccc------ccC---CcccccccCCcceeeeCcccHHHHHHHHHHhhccC--CCCCccccceeeCceeEEE
Q 010995          156 AIDFILHDFEMA------EVE---PISTYVDFGEREFLVADERGYAHLLYKMAEEFLST--SDGKILDNRLKLNKVVREL  224 (496)
Q Consensus       156 ~~~~~~~~~~~~------~~~---~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~--~~~~~~g~~i~~~~~V~~I  224 (496)
                      .++++....+..      +..   ....+..++...++...++|++.++++|++.+.+.  ..+.+.|++|++|++|++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i  240 (472)
T 1b37_A          161 VVDYYKFDYEFAEPPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREI  240 (472)
T ss_dssp             HHHHHHTHHHHSSCGGGBBSTTTSSCHHHHHHCSEEEEECCTTCTTHHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEE
T ss_pred             HHHHHHHhhhhcccccccchhhccccccccccCCceeeeecCCcHHHHHHHHHHhccccccccccccccEEEcCCEEEEE
Confidence            555544222111      110   01111123444456666899999999999987652  0111237899999999999


Q ss_pred             EEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCCCCceEE
Q 010995          225 QHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFI  304 (496)
Q Consensus       225 ~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~~~~~~~  304 (496)
                      +.++++|+|++.+|++++||+||+|+|+..+.+.++.|.|+||+.+.+++++++++++.||++.|+++||+..++..+++
T Consensus       241 ~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~l~~~~~~~~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~~~~~~~~~  320 (472)
T 1b37_A          241 KYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFL  320 (472)
T ss_dssp             EECSSCEEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSEEECEEEEEEECSSCCSCCSTTCSEEE
T ss_pred             EEcCCcEEEEECCCCEEEcCEEEEecCHHHhccCCeeECCCCCHHHHHHHHhcCCcceeEEEEECCCcCCCCCCCcceEE
Confidence            99999999999999899999999999999999866778999999999999999999999999999999998754555666


Q ss_pred             eecCCCCccccceeccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhc-CCCCCCCCeeEecccCCCCCCC
Q 010995          305 YAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMF-GPDIPNATDILVPRWWNNRFQR  383 (496)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~-~~~~~~~~~~~~~rw~~~~~~~  383 (496)
                      +.+.+.+...+|..++...++.++|++++.++.+..|..++++++++.++++|++++ +...++++++.+++|..+||+.
T Consensus       321 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~a~~~~~~~~~e~~~~~l~~L~~~~Pg~~~~~~~~~~~~~W~~~~~~~  400 (472)
T 1b37_A          321 YASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYK  400 (472)
T ss_dssp             ECCSSTTSSCEEEECTTTSTTCCEEEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHHCTTSCCCCCSEEECCCTTTCTTTS
T ss_pred             ecccCCccceeeecccCCCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHcCCCCCCCCceEEecccCCCCCCC
Confidence            665544555666655444567778888776656667888999999999999999999 5556778888999999999999


Q ss_pred             cccCCCCCCCChHHHHHHhCCCCcEEEccccccCcCCccchHHHHHHHHHHHHHHHHHhccccccc
Q 010995          384 GSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNERNN  449 (496)
Q Consensus       384 g~~~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~~~~~~~~  449 (496)
                      |+|+++.||.....++.+++|++||||||+++++.++|+||||+.||.+||++|++.++...+..+
T Consensus       401 G~~~~~~~g~~~~~~~~l~~p~~~l~fAG~~t~~~~~g~v~GA~~SG~~aA~~i~~~l~~~~~~~~  466 (472)
T 1b37_A          401 GTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQKKMCKYH  466 (472)
T ss_dssp             SSEEECBTTCCHHHHHHHHCCBTTEEECSGGGCTTTTTSHHHHHHHHHHHHHHHHHHHHHCCC---
T ss_pred             cccCCCCCCCChhHHHHHhccCCcEEEeecccCCCCCCchhHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence            999988999876678899999999999999999877899999999999999999999998877633

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=100.00  E-value=1.1e-47  Score=397.21  Aligned_cols=437  Identities=21%  Similarity=0.308  Sum_probs=303.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeC-CcEEeecceEEecCCCCCCChHHHHHHhcCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFG-GVSVELGAGWIAGVGGKESNPVWELASKSGL   83 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~-g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl   83 (496)
                      .++||||||||++||+||+.|+++|+ +|+|||+++++|||++|.+.+ |..+|.|+++++.    .++++.++++++|+
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~~G~-~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~----~~~~~~~l~~~lgl   77 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHDSGL-NVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGP----TQNRILRLAKELGL   77 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHHTTC-CEEEECSSSSSBTTCCEECCTTTSCEESSCCEECT----TCHHHHHHHHHTTC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCCCCCCceeecccCCCcccccCceEecC----CcHHHHHHHHHcCC
Confidence            46899999999999999999999999 699999999999999999885 9999999999987    67889999999999


Q ss_pred             ccccccCCCcceEEEcCCCccc------Ch---hHHHHHHHHHHHHHHHHhcccc------------ccchhHHHHHHhh
Q 010995           84 RTCFSDYTNARYNIYDRSGKII------PS---GVAADSYKKAVESAIANLKNLE------------ATNSNIGEVIKAA  142 (496)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~g~~~------~~---~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~  142 (496)
                      +...... ... .++..+|..+      +.   ......+..+............            ....++.+++...
T Consensus        78 ~~~~~~~-~~~-~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~  155 (520)
T 1s3e_A           78 ETYKVNE-VER-LIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKL  155 (520)
T ss_dssp             CEEECCC-SSE-EEEEETTEEEEECSSSCCCCSHHHHHHHHHHHHHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHHHHHH
T ss_pred             cceeccc-CCc-eEEEECCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCcCCCccccchhhhhccCHHHHHHhh
Confidence            8655322 221 2222344321      11   1111111122221111111110            0112344444431


Q ss_pred             hcCCCCCCChHHHHHHHHHhhccccccCCcc------ccc---------ccCCcceeeeCcccHHHHHHHHHHhhccCCC
Q 010995          143 TELPSSPKTPLELAIDFILHDFEMAEVEPIS------TYV---------DFGEREFLVADERGYAHLLYKMAEEFLSTSD  207 (496)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---------~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~  207 (496)
                      .     .....+..++.+............+      .+.         ...........++|++.++++|++.      
T Consensus       156 ~-----~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~------  224 (520)
T 1s3e_A          156 C-----WTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDL------  224 (520)
T ss_dssp             C-----SSHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCTHHHHHHHHHH------
T ss_pred             C-----CCHHHHHHHHHHHhhhcCCChHHhHHHHHHHHHhhcCchhhhcccCCCcceEEEeCCHHHHHHHHHHH------
Confidence            1     0011111111111100000000000      000         0001112234589999999999988      


Q ss_pred             CCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEE
Q 010995          208 GKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFL  287 (496)
Q Consensus       208 ~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l  287 (496)
                         .|++|++|++|++|+.++++|+|++.+|++++||+||+|+|+..+.+  +.+.|++|+.+.+++++++++++.|+++
T Consensus       225 ---lg~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~--l~~~p~lp~~~~~~i~~~~~~~~~kv~l  299 (520)
T 1s3e_A          225 ---LGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMK--IHFNPPLPMMRNQMITRVPLGSVIKCIV  299 (520)
T ss_dssp             ---HGGGEESSCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGGGGG--SEEESCCCHHHHHHTTSCCBCCEEEEEE
T ss_pred             ---cCCcEEcCCeeEEEEECCCeEEEEECCCeEEEeCEEEECCCHHHHcc--eeeCCCCCHHHHHHHHhCCCcceEEEEE
Confidence               57899999999999999889999999998999999999999999987  5588999999999999999999999999


Q ss_pred             EcCCCCCCCCCCCceEEeecCCCCccccceeccccCCC-CcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCCC-C
Q 010995          288 KFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPG-SNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPD-I  365 (496)
Q Consensus       288 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~-~  365 (496)
                      .|+++||++..-.++....++......+|+..  .+++ ..++++++.+..+..|..++++|+++.++++|+++|+.. .
T Consensus       300 ~~~~~~w~~~~~~g~~~~~~~~~~~~~~~d~~--~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~vl~~L~~~~~~~~~  377 (520)
T 1s3e_A          300 YYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDT--KPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEA  377 (520)
T ss_dssp             ECSSCGGGGGTEEEEEEECSTTCSCSEEEECC--CTTSCSCEEEEEEETHHHHHHTTSCHHHHHHHHHHHHHHHHTCGGG
T ss_pred             EeCCCcccCCCCCceeeccCCCCceEEEeeCC--CCCCCCCEEEEEccchhhhhhhcCCHHHHHHHHHHHHHHHhCcccc
Confidence            99999997521112222222222222233321  2233 378888887777788999999999999999999999854 4


Q ss_pred             CCCCeeEecccCCCCCCCcccC-CCCCCCChHHHHHHhCCCCcEEEccccccCcCCccchHHHHHHHHHHHHHHHHHhcc
Q 010995          366 PNATDILVPRWWNNRFQRGSYS-NYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKD  444 (496)
Q Consensus       366 ~~~~~~~~~rw~~~~~~~g~~~-~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~~~  444 (496)
                      .+|.++.+++|.+++|+.|+|. ++.||....+.+.+++|++||||||++++..++|+||||+.||.+||++|++.++..
T Consensus       378 ~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~l~~p~~~L~fAG~~t~~~~~g~v~GAi~SG~~aA~~i~~~l~~~  457 (520)
T 1s3e_A          378 LEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILHAMGKI  457 (520)
T ss_dssp             GCCSEEEEEEGGGCTTTCSSSCBCCCTTHHHHHGGGTTCCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             CCccEEEEEeeCCCCCCCCCCccccCCCccccchHHHhCCCCCEEEeehhhcCcCcEEhHHHHHHHHHHHHHHHHHHhcC
Confidence            6788999999999999999997 788887655566788999999999999988788999999999999999999999754


Q ss_pred             ccc-ccccCCccccccccccccc
Q 010995          445 NER-NNSETQNFLLEPLLALTLT  466 (496)
Q Consensus       445 ~~~-~~~~~~~~~~~~~~~~~~~  466 (496)
                      ... +-...|...++|.....+.
T Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~  480 (520)
T 1s3e_A          458 PEDEIWQSEPESVDVPAQPITTT  480 (520)
T ss_dssp             CGGGSSCCCCCCSSSCCCCCCCC
T ss_pred             ccccccccCCccccCCccccccc
Confidence            442 2223455555555555433

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=100.00  E-value=2.5e-46  Score=384.96  Aligned_cols=412  Identities=18%  Similarity=0.262  Sum_probs=285.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCccc
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTC   86 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~~   86 (496)
                      +||+|||||++||+||+.|+++|+ +|+|||+++++|||++|.+.+|+.+|.|+++++.    .+++++++++++|+...
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~-~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~~----~~~~~~~~l~~lgl~~~  114 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGF-KTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHW----HQSHVWREITRYKMHNA  114 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTC-CEEEECSSSBSBTTCCEEEETTEEEECSCCCBCT----TSHHHHHHHHHTTCTTC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCC-CEEEEeCCCCCCCcceecccCCeeecCCCeEecC----ccHHHHHHHHHcCCcce
Confidence            799999999999999999999999 6999999999999999999999999999999987    78899999999999543


Q ss_pred             cccC---CCcceEEEcCC--Ccc--cChhHHHHHHHHHHHHHHH----Hhccc-----cc---------cchhHHHHHHh
Q 010995           87 FSDY---TNARYNIYDRS--GKI--IPSGVAADSYKKAVESAIA----NLKNL-----EA---------TNSNIGEVIKA  141 (496)
Q Consensus        87 ~~~~---~~~~~~~~~~~--g~~--~~~~~~~~~~~~~~~~~~~----~~~~~-----~~---------~~~~~~~~~~~  141 (496)
                      ....   ......++..+  |..  ++.......+......+..    .....     ..         ...++.+++..
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~  194 (495)
T 2vvm_A          115 LSPSFNFSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPEFRKYDEMSYSERIDQ  194 (495)
T ss_dssp             EEESCCCSSSCCEEEEESSTTCCEEECHHHHHHHHHHHHHHHHCSSSSTTTTTCSCTTSTTSSTTHHHHHTSBHHHHHHH
T ss_pred             eecccccCCCceEEEecCCCCceeecCHHHHHHHHHHHHHHHHccchhhhhhcCCCCCCcccCcchhhhhhhhHHHHHHH
Confidence            3222   11111223233  433  3332222222222222211    00000     00         01134444443


Q ss_pred             hhcCCCCCCChHHHHHHHHHhhccccccCCccc------ccccC-------CcceeeeCcccHHHHHHHHHHhhccCCCC
Q 010995          142 ATELPSSPKTPLELAIDFILHDFEMAEVEPIST------YVDFG-------EREFLVADERGYAHLLYKMAEEFLSTSDG  208 (496)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-------~~~~~~~~~~G~~~l~~~l~~~~~~~~~~  208 (496)
                      ....  .. ......++.+............+.      +...+       ........++|++.++++|.+.+.+    
T Consensus       195 ~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~----  267 (495)
T 2vvm_A          195 IRDE--LS-LNERSSLEAFILLCSGGTLENSSFGEFLHWWAMSGYTYQGCMDCLMSYKFKDGQSAFARRFWEEAAG----  267 (495)
T ss_dssp             HGGG--CC-HHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSSHHHHHHHHHSEEETTCHHHHHHHHHHHHHT----
T ss_pred             hhcc--CC-HHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHcCCCHHHHHhhhceEEeCCCHHHHHHHHHHHhhh----
Confidence            1100  00 011112222111111011111110      00000       0112234589999999999999876    


Q ss_pred             Cccc-cceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEE
Q 010995          209 KILD-NRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFL  287 (496)
Q Consensus       209 ~~~g-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l  287 (496)
                        .| ++|++|++|++|+.+++++.|++.+|++++||+||+|+|+..+.+  +.|.|+||+.+.++++.+++.+..||++
T Consensus       268 --~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~l~~--i~~~p~lp~~~~~ai~~~~~~~~~kv~l  343 (495)
T 2vvm_A          268 --TGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLST--IQFSPALSTERISAMQAGHVSMCTKVHA  343 (495)
T ss_dssp             --TTCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGGGGGG--SEEESCCCHHHHHHHHHCCCCCCEEEEE
T ss_pred             --cCceEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHHHhh--eeeCCCCCHHHHHHHHhcCCCceeEEEE
Confidence              56 889999999999998888999999888899999999999999987  5688999999999999999999999999


Q ss_pred             EcCCCCCCCCCCCceEEeecCCCCccccceeccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCCCCCC
Q 010995          288 KFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPN  367 (496)
Q Consensus       288 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~~~~  367 (496)
                      .|++++|.     .+.....+...+..+|... ..+.+..+|+++. +.. ..   +++++..+.++++|+++++. ..+
T Consensus       344 ~~~~~~~~-----~~~g~~~~~~~~~~~~~~~-~~~~~~~vl~~~~-~~~-~~---~~~~e~~~~~~~~L~~~~~~-~~~  411 (495)
T 2vvm_A          344 EVDNKDMR-----SWTGIAYPFNKLCYAIGDG-TTPAGNTHLVCFG-NSA-NH---IQPDEDVRETLKAVGQLAPG-TFG  411 (495)
T ss_dssp             EESCGGGG-----GEEEEECSSCSSCEEEEEE-ECTTSCEEEEEEE-CST-TC---CCTTTCHHHHHHHHHTTSTT-SCC
T ss_pred             EECCccCC-----CceeEecCCCCcEEEecCC-CCCCCCeEEEEEe-Ccc-cc---CCCHHHHHHHHHHHHHhcCC-CCC
Confidence            99999984     2222222222333334321 1223456777644 332 22   45667788899999998763 456


Q ss_pred             CCeeEecccCCCCCCCcccCCCCCCCChHHHHHHhCCCCcEEEccccccCcCCccchHHHHHHHHHHHHHHHHHhcccc
Q 010995          368 ATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNE  446 (496)
Q Consensus       368 ~~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~~~~~  446 (496)
                      +.++.+++|.++||++|+|++++||......+.+++|.+|||||||+++..++++||||+.||.+||++|++.+++..+
T Consensus       412 ~~~~~~~~W~~dp~~~g~y~~~~~g~~~~~~~~l~~p~~~l~fAGe~t~~~~~g~veGAi~SG~raA~~i~~~l~~~~~  490 (495)
T 2vvm_A          412 VKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQGLREKHGGVVFANSDWALGWRSFIDGAIEEGTRAARVVLEELGTKRE  490 (495)
T ss_dssp             EEEEEECCTTTCTTTSSSSCCCCTTHHHHHHHHHHCCBTTEEECCGGGCSSSTTSHHHHHHHHHHHHHHHHHHHCCC--
T ss_pred             ceEEEEeEcCCCCCCCCCccCcCCCcchhhHHHHhCcCCCEEEechhhhcCCceEEEhHHHHHHHHHHHHHHHhccccC
Confidence            7888999999999999999999999866678899999999999999999778899999999999999999999875554

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=100.00  E-value=3.6e-46  Score=385.15  Aligned_cols=425  Identities=22%  Similarity=0.365  Sum_probs=274.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC-CCcEEEEeeCCCCCeEEEeeee-CCcEEeecceEEecCCCCCCChHHHHHHhcC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENG-IEDILILEASDRIGGRVRNEKF-GGVSVELGAGWIAGVGGKESNPVWELASKSG   82 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G-~~~V~vlEa~~~~GGr~~t~~~-~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lg   82 (496)
                      ..+||||||||+|||+||+.|+++| + +|+|||+++++|||++|.+. +|+.+|+|+++++.   ...++++.++.++|
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~-~V~VlEa~~riGGr~~t~~~~~G~~~D~G~~~~~~---~~~~~~~~~~~~lg   82 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQNGIQ-DCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHD---TLTNPLFLEEAQLS   82 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHTTCC-SEEEECSSSSSBTTCCEEECGGGCEEESSCCEECC---TTTCHHHHHHHHHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcCCC-CEEEEeCCCCCCCceeeeecCCCcEEecCCeEEec---CCCChHHHHHHHhC
Confidence            4579999999999999999999999 9 79999999999999999886 79999999999986   23678888888888


Q ss_pred             Cccccc--cCCCcceEEEcCCCcccC---hhHHHHHHHHHHHHHHHHhcc-ccccchhHHHHHHhhhcCCCCCCChH-HH
Q 010995           83 LRTCFS--DYTNARYNIYDRSGKIIP---SGVAADSYKKAVESAIANLKN-LEATNSNIGEVIKAATELPSSPKTPL-EL  155 (496)
Q Consensus        83 l~~~~~--~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  155 (496)
                      +.....  .+.+.....+..++..+.   ..........+.+........ ......++.+++.............. ..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~l~~~l~~~~~~l~~~~~~  162 (516)
T 1rsg_A           83 LNDGRTRFVFDDDNFIYIDEERGRVDHDKELLLEIVDNEMSKFAELEFHQHLGVSDCSFFQLVMKYLLQRRQFLTNDQIR  162 (516)
T ss_dssp             HHHCCCCEECCCCCCEEEETTTEECTTCTTTCHHHHHHHHHHHHHHHC-------CCBHHHHHHHHHHHHGGGSCHHHHH
T ss_pred             CCCcceeEEECCCCEEEEcCCCccccccHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHhhcccCHHHHH
Confidence            742211  122222223333333322   111111111111111111100 00111223333322100000000000 00


Q ss_pred             HHHHHHhhcc---ccccCCcc---cccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEc-C
Q 010995          156 AIDFILHDFE---MAEVEPIS---TYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHS-R  228 (496)
Q Consensus       156 ~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~-~  228 (496)
                      ....+...++   .......+   .+....+...+  .++ ++.++++|++.+        .+++|++|++|++|..+ +
T Consensus       163 ~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~--~~g-~~~l~~~l~~~l--------~~~~i~~~~~V~~I~~~~~  231 (516)
T 1rsg_A          163 YLPQLCRYLELWHGLDWKLLSAKDTYFGHQGRNAF--ALN-YDSVVQRIAQSF--------PQNWLKLSCEVKSITREPS  231 (516)
T ss_dssp             HHHHHHGGGHHHHTBCTTTSBHHHHCCCCSSCCEE--ESC-HHHHHHHHHTTS--------CGGGEETTCCEEEEEECTT
T ss_pred             HHHHHHHHHHHHhCCChHHCChHHHHhhccCcchh--hhC-HHHHHHHHHHhC--------CCCEEEECCEEEEEEEcCC
Confidence            0011110000   00000111   01111222222  245 999999999886        34689999999999986 5


Q ss_pred             CceEEEeCCCcEEEcCEEEEecChHHHhcC---------CcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCCC
Q 010995          229 NGVTVKTEDGCVYEANYVILSASIGVLQSD---------LISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPG  299 (496)
Q Consensus       229 ~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~---------li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~~  299 (496)
                      ++|.|++.+|++++||+||+|+|+.+++..         .+.|.|+||+.+.+++++++++++.||++.|+++||++.. 
T Consensus       232 ~~v~v~~~~g~~~~ad~VI~t~p~~~l~~~~~~~~~~~~~i~f~P~Lp~~~~~ai~~~~~~~~~Kv~l~f~~~fW~~~~-  310 (516)
T 1rsg_A          232 KNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNES-  310 (516)
T ss_dssp             SCEEEEETTSCEEEEEEEEECCCHHHHHGGGSSCSCSTTCCEEESCCCHHHHHHTTSSCCCCCEEEEEEESSCCSCCSC-
T ss_pred             CeEEEEECCCcEEECCEEEECCCHHHhhhccccccccccceEecCCCCHHHHHHHHhCCCCcceEEEEEeCCCCCCCCC-
Confidence            679999999988999999999999999742         3789999999999999999999999999999999998632 


Q ss_pred             CceEEeecCCCCc------------c---------------ccce------eccccCCCCcEEEEEeccccchhcccC--
Q 010995          300 KEFFIYAHERRGY------------Y---------------TFWQ------HMENAYPGSNILVVTLTNGESKRVEAQ--  344 (496)
Q Consensus       300 ~~~~~~~~~~~~~------------~---------------~~~~------~~~~~~~~~~vl~~~~~~~~a~~~~~~--  344 (496)
                      ..+....+...++            +               ..|.      .+ ....+.++|+++..++.+..++.+  
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~~~~g~~a~~~~~l~~  389 (516)
T 1rsg_A          311 SKIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNL-SKSTGVASFMMLMQAPLTNHIESIRE  389 (516)
T ss_dssp             SEEEECCCCCHHHHHHHHHCCSHHHHHHHC---------CCCTTSSCEEEEEH-HHHTSCSEEEEEECBTHHHHHHHTTT
T ss_pred             CcEEEeCCCCccchhhcccCcccchhhhcccccccccccccccccCceeEEEe-eecCCCcEEEEEecchHHHHHHhcCC
Confidence            2232222110000            0               0111      01 112356789988888888888888  


Q ss_pred             CcHHHHHH---HHHHHHHhcCC-----CCC---------CCC--eeEecccCCCCCCCcccCCCCCCCCh-HHHHHHh-C
Q 010995          345 PDEETLKE---AMEVLQDMFGP-----DIP---------NAT--DILVPRWWNNRFQRGSYSNYPIISDN-QLVNSIR-A  403 (496)
Q Consensus       345 ~~ee~~~~---~~~~L~~~~~~-----~~~---------~~~--~~~~~rw~~~~~~~g~~~~~~~g~~~-~~~~~~~-~  403 (496)
                      +++++++.   ++++|.++||.     +.+         .|.  ++.+++|.++||++|+|+++.||... .....+. .
T Consensus       390 ~~~~~~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~a~~p~~~~~~~~~W~~dp~~~Gsys~~~~g~~~~~~~~~l~~~  469 (516)
T 1rsg_A          390 DKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMVVAMSNG  469 (516)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTCCCCEECCC-------CCSCEEEEEEECCTTTCTTTTTCCCCCBC----CHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHHhhccccccccCCCCcccccccCCCccceEEEecCCCCCCCCccCCCcCCCCCHHHHHHHhccC
Confidence            88887654   66677766652     221         144  78899999999999999999999843 3455565 4


Q ss_pred             CCCcEEEccccccCcCCccchHHHHHHHHHHHHHHHHHhcccc
Q 010995          404 PVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNE  446 (496)
Q Consensus       404 p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~~~~~  446 (496)
                      |.++||||||+|+..++||||||++||.+||++|++.+....+
T Consensus       470 ~~~rl~FAGe~ts~~~~g~v~GA~~SG~raA~~i~~~~~~~~~  512 (516)
T 1rsg_A          470 QDSRIRFAGEHTIMDGAGCAYGAWESGRREATRISDLLKLEHH  512 (516)
T ss_dssp             SSSSEEECSTTSCSTTBTSHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred             CCCcEEEeccccccCCCccchhHHHHHHHHHHHHHHHhhhhhh
Confidence            7799999999999888999999999999999999999886654

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=100.00  E-value=3.8e-45  Score=386.32  Aligned_cols=417  Identities=25%  Similarity=0.465  Sum_probs=289.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCc
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLR   84 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~   84 (496)
                      ..+||+|||||++||+||+.|+++|+ +|+|+|+++++||++.+.+..++.+|.|+++++..   ..+++..+.+++|++
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~~g~-~v~~~e~~~~~gg~~~~~~~~~~~~~~G~~~~~~~---~~~~~~~l~~~l~~~  181 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGL---GGNPMAVVSKQVNME  181 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECSSSSSBTTCCEEEETTEEEESSCCEECCS---BTCHHHHHHHHHTCC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCC-eEEEEecCCCCCCccccccccCchhhcCcEEEeCC---CCchHHHHHHHhCcc
Confidence            45899999999999999999999999 79999999999999999999999999999999872   356778899999986


Q ss_pred             cccccCCCcceEEEcCCCcccChhHH---HHHHHHHHHHHHHHhcc--cc---c--cch---------------------
Q 010995           85 TCFSDYTNARYNIYDRSGKIIPSGVA---ADSYKKAVESAIANLKN--LE---A--TNS---------------------  133 (496)
Q Consensus        85 ~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~--~~---~--~~~---------------------  133 (496)
                      .....  . ...++..+|..++....   ...+.............  ..   .  .+.                     
T Consensus       182 ~~~~~--~-~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  258 (662)
T 2z3y_A          182 LAKIK--Q-KCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIE  258 (662)
T ss_dssp             EEECC--S-CCCEECTTSCBCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCEETTEECBHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccc--c-cceEEeCCCcCCCcchhhhhhHHHHHHHHHHHHHHhcccccccCCCCCCHHHHHHHHHHhhhhhhhhhhhh
Confidence            54322  1 12356667766553221   11111111110000000  00   0  000                     


Q ss_pred             ------------------------------------------------------------hHHHHHHh---------hh-
Q 010995          134 ------------------------------------------------------------NIGEVIKA---------AT-  143 (496)
Q Consensus       134 ------------------------------------------------------------~~~~~~~~---------~~-  143 (496)
                                                                                  ...++...         .. 
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~s~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~  338 (662)
T 2z3y_A          259 HWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQ  338 (662)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCC--------CCTHHHHHHHHHHHHTTTHHHHHHHTHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhhhhhhcchhhhHHHHhhhhhhhhhcccccccchhhhhhhhhhhHHHHHhhhhhhhhhhhhHHHHHH
Confidence                                                                        00000000         00 


Q ss_pred             c-CCCCC-----CChHHHHHHHHHhhccccc---cCCccc-----ccccCCcceeeeCcccHHHHHHHHHHhhccCCCCC
Q 010995          144 E-LPSSP-----KTPLELAIDFILHDFEMAE---VEPIST-----YVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGK  209 (496)
Q Consensus       144 ~-~~~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~  209 (496)
                      . ....+     .......++|+....+...   ...++.     ...+.........++|++.|+++|++.        
T Consensus       339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~~g~~~~~~gG~~~l~~~La~~--------  410 (662)
T 2z3y_A          339 ELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEG--------  410 (662)
T ss_dssp             HHTTSCCCSCSSCHHHHHHHHHHHHHHHHHTTSCGGGBBTTTTTTTGGGCCBSCCEEETTCTTHHHHHHTTT--------
T ss_pred             HhhccCcccccccHHHHHHHHHHHHHHHHhcCCChhhcCHhhcCCCcccccCCceeeecCcHHHHHHHHHhc--------
Confidence            0 00000     0001112222222111111   001110     000111112345689999999998765        


Q ss_pred             ccccceeeCceeEEEEEcCCceEEEeCC------CcEEEcCEEEEecChHHHhc--CCcccCCCCcHHHHHHHhhCCCcc
Q 010995          210 ILDNRLKLNKVVRELQHSRNGVTVKTED------GCVYEANYVILSASIGVLQS--DLISFKPPLPKWKTEAIEKCDVMV  281 (496)
Q Consensus       210 ~~g~~i~~~~~V~~I~~~~~~v~V~~~~------G~~~~ad~VI~A~p~~~l~~--~li~~~p~l~~~~~~~i~~~~~~~  281 (496)
                         .+|++|++|++|..++++|+|++.+      |++++||+||+|+|+.++++  ..+.|.|+||+.+.++++++++++
T Consensus       411 ---l~I~l~~~V~~I~~~~~~v~V~~~~~~~~~~~~~~~Ad~VI~tvP~~vL~~l~~~i~f~P~LP~~k~~Ai~~l~~g~  487 (662)
T 2z3y_A          411 ---LDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGN  487 (662)
T ss_dssp             ---CEEETTEEEEEEEEETTEEEEEEEESSCTTCEEEEEESEEEECCCHHHHHCSSCSSEEESCCCHHHHHHHHHSEECC
T ss_pred             ---CceecCCeEEEEEECCCcEEEEEeecccCCCCeEEEeCEEEECCCHHHHhcccCceEEcCCCCHHHHHHHHhCCccc
Confidence               3699999999999999999988765      56899999999999999987  236799999999999999999999


Q ss_pred             eeEEEEEcCCCCCCCCC-CCceEEeecCCCC-ccccceeccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHH
Q 010995          282 YTKIFLKFPCKFWPCSP-GKEFFIYAHERRG-YYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQD  359 (496)
Q Consensus       282 ~~~v~l~~~~~~w~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~  359 (496)
                      +.||++.|+++||+... .++++....+..+ +..+|..     .+.++|++++.+..+..+..++++++++.++++|++
T Consensus       488 ~~KV~l~f~~~fW~~~~~~~G~l~~~~~~~~~~~~~~~~-----~~~~vL~~~~~G~~a~~~~~lsdee~~~~~l~~L~~  562 (662)
T 2z3y_A          488 LNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNL-----YKAPILLALVAGEAAGIMENISDDVIVGRCLAILKG  562 (662)
T ss_dssp             CEEEEEECSSCCSCTTCSEEEECCSSSTTTTEEEEEECC-----SSSSEEEEEECTHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             eeEEEEEcCcccccCCCCceeeecCCCCCCCceeEEEeC-----CCCCEEEEEeccHhHHHHHhCCHHHHHHHHHHHHHH
Confidence            99999999999998621 1122111111222 1222322     145688888888888889999999999999999999


Q ss_pred             hcCCC-CCCCCeeEecccCCCCCCCcccCCCCCCCChHHHHHHhCCC-------------CcEEEccccccCcCCccchH
Q 010995          360 MFGPD-IPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPV-------------AGIFFTGEHTSERFNGYVHG  425 (496)
Q Consensus       360 ~~~~~-~~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~~~~p~-------------~~l~~aGd~~~~~~~g~~eg  425 (496)
                      +||.. .++|..+.+++|.++||++|+|++++||........+.+|+             +||||||++++..++|||||
T Consensus       563 ~~g~~~~~~p~~~~v~~W~~dp~~~Gsys~~~pg~~~~~~~~l~~p~~~~~~~~~~~~~~grl~FAGe~ts~~~~g~v~G  642 (662)
T 2z3y_A          563 IFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHG  642 (662)
T ss_dssp             HHCTTSSCCCSEEEECCTTTCTTTSSSCEECBTTCCTHHHHHHHCCBCC---------CCCCEEECSGGGCTTSTTSHHH
T ss_pred             HhCCcccCCCceeEEEEECCCCCCCcccccCCCCCchhhHHHHhCcCccccccccccCCCCcEEEEeccccCCCCcCHHH
Confidence            99854 46899999999999999999999999998777777787775             68999999999888899999


Q ss_pred             HHHHHHHHHHHHHHHHhcc
Q 010995          426 GYLAGIDTGKAVVEKIRKD  444 (496)
Q Consensus       426 A~~SG~~aA~~il~~l~~~  444 (496)
                      |+.||.+||++|++.+.+.
T Consensus       643 Ai~SG~raA~~i~~~~~g~  661 (662)
T 2z3y_A          643 ALLSGLREAGRIADQFLGA  661 (662)
T ss_dssp             HHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHHHccCC
Confidence            9999999999999988753

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=100.00  E-value=7.7e-45  Score=387.85  Aligned_cols=420  Identities=26%  Similarity=0.475  Sum_probs=292.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCc
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLR   84 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~   84 (496)
                      ..++|+|||||++||+||+.|+++|+ +|+|||+++++||++.+.+..++.+|+|+++++..   ..+++..+.+++|+.
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~g~-~v~v~E~~~~~GG~~~~~~~~~~~~~~G~~~~~~~---~~~~~~~l~~~lg~~  352 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGL---GGNPMAVVSKQVNME  352 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSSCTTCCEEEETTEEEESSCCEECCS---BTCHHHHHHHHTTCC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-cEEEEEecCcCCCceeeecccccchhcCceEecCC---CCchHHHHHHHhCCc
Confidence            46799999999999999999999999 79999999999999999999999999999999872   356788899999986


Q ss_pred             cccccCCCcceEEEcCCCcccChhHH---HHHHHHHHHHHHHHhc--ccc-----ccch---------------------
Q 010995           85 TCFSDYTNARYNIYDRSGKIIPSGVA---ADSYKKAVESAIANLK--NLE-----ATNS---------------------  133 (496)
Q Consensus        85 ~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~--~~~-----~~~~---------------------  133 (496)
                      .....  . ...++..+|..++....   ...+............  .+.     +.+.                     
T Consensus       353 ~~~~~--~-~~~~~~~~G~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~slg~~~e~v~~~~er~~~~e~l~  429 (852)
T 2xag_A          353 LAKIK--Q-KCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIE  429 (852)
T ss_dssp             EEECC--C-CCCEECTTSCBCCHHHHHHHHHHHHHHHHHHHHHHHTSCCCEETTEECBHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcc--c-cceEEecCCccccchhhhhhhhhhhhhHHHHHHHhhhhhhhcccCCCccHHHHHHHhhhhhhhhcchhHHH
Confidence            54322  1 12356667766553221   1111111100000000  000     0000                     


Q ss_pred             ------------------------hHHHHHHh---hhc------------------------------------------
Q 010995          134 ------------------------NIGEVIKA---ATE------------------------------------------  144 (496)
Q Consensus       134 ------------------------~~~~~~~~---~~~------------------------------------------  144 (496)
                                              .+.++...   +..                                          
T Consensus       430 ~~~~i~~~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~p~~~~~e~s~rs~~~~l~~~~~~~~~l~~~~~~l~~~l~  509 (852)
T 2xag_A          430 HWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQ  509 (852)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred             HhhhhhhhhhhhhhhHHHHHHhHHHHHHHHHHHhhhhcccccccchhhhhhhhhhhhHHHHHHHHhhhhhhhhhHHHHHH
Confidence                                    00000000   000                                          


Q ss_pred             -----CCC--CCCChHHHHHHHHHhhccccc---cCCccc-----ccccCCcceeeeCcccHHHHHHHHHHhhccCCCCC
Q 010995          145 -----LPS--SPKTPLELAIDFILHDFEMAE---VEPIST-----YVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGK  209 (496)
Q Consensus       145 -----~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~  209 (496)
                           .+.  .........++|+...++...   ...++.     ...+.....+..+++|++.|+++|++.        
T Consensus       510 ~l~~~~~~~~~ls~~~~~~l~~~~~~~e~~~~~~l~~lSl~~~~~~~~~~~~g~~~~~~gG~~~L~~aLa~~--------  581 (852)
T 2xag_A          510 ELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEG--------  581 (852)
T ss_dssp             HHHHSCCCSCSSCTTHHHHHHHHHHHHHHHHTSCTTTBBTTTTTGGGGGCCBSCCEEETTCTTHHHHHHTTT--------
T ss_pred             hhhccCcccccCCHHHHHHHHHHHhhhcccccCChHhhhhhhhhhccccccCCceEEecCcHHHHHHHHHhC--------
Confidence                 000  000111122223222221110   111110     000111112345689999999998765        


Q ss_pred             ccccceeeCceeEEEEEcCCceEEEeCC------CcEEEcCEEEEecChHHHhc--CCcccCCCCcHHHHHHHhhCCCcc
Q 010995          210 ILDNRLKLNKVVRELQHSRNGVTVKTED------GCVYEANYVILSASIGVLQS--DLISFKPPLPKWKTEAIEKCDVMV  281 (496)
Q Consensus       210 ~~g~~i~~~~~V~~I~~~~~~v~V~~~~------G~~~~ad~VI~A~p~~~l~~--~li~~~p~l~~~~~~~i~~~~~~~  281 (496)
                         .+|++|++|++|.+++++|+|++.+      |++++||+||+|+|+.+|++  ..|.|.|+||..+.++++++++++
T Consensus       582 ---l~I~Lnt~V~~I~~~~~gV~V~~~~~~~~~~g~~i~AD~VIvTvPl~vLk~l~~~I~F~P~LP~~k~~AI~~l~~g~  658 (852)
T 2xag_A          582 ---LDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGN  658 (852)
T ss_dssp             ---CCEECSEEEEEEEEETTEEEEEEEESSSTTCEEEEEESEEEECCCHHHHHCSSCSSEEESCCCHHHHHHHHHSEECC
T ss_pred             ---CCEEeCCeEEEEEEcCCcEEEEEeecccCCCCeEEECCEEEECCCHHHHHhhhcccccCCCCCHHHHHHHHcCCccc
Confidence               3699999999999999999988765      56899999999999999987  236799999999999999999999


Q ss_pred             eeEEEEEcCCCCCCCCC-CCceEEeecCCCC-ccccceeccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHH
Q 010995          282 YTKIFLKFPCKFWPCSP-GKEFFIYAHERRG-YYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQD  359 (496)
Q Consensus       282 ~~~v~l~~~~~~w~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~  359 (496)
                      +.||++.|+++||+... .++++.......+ +..+|...     +.++|++++.+..+..+..++++++++.++++|++
T Consensus       659 v~KV~L~F~~~fW~~~~~~fG~l~~~~~~~~~l~~~~~~~-----~~pvLl~~v~G~~a~~l~~lsdeel~~~~l~~L~~  733 (852)
T 2xag_A          659 LNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLY-----KAPILLALVAGEAAGIMENISDDVIVGRCLAILKG  733 (852)
T ss_dssp             CEEEEEECSSCCSCTTCCEEEECCSSSTTTTTTCEEEECS-----SSSEEEEEECHHHHHHGGGSCHHHHHHHHHHHHHH
T ss_pred             eEEEEEEcCCcccCCCCCeeeeeccccCCCCceEEEecCC-----CCCEEEEEecCcCHHHHhcCCHHHHHHHHHHHHHH
Confidence            99999999999998621 1122222222222 22333321     44688888888888889999999999999999999


Q ss_pred             hcCCC-CCCCCeeEecccCCCCCCCcccCCCCCCCChHHHHHHhCCC-------------CcEEEccccccCcCCccchH
Q 010995          360 MFGPD-IPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPV-------------AGIFFTGEHTSERFNGYVHG  425 (496)
Q Consensus       360 ~~~~~-~~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~~~~p~-------------~~l~~aGd~~~~~~~g~~eg  425 (496)
                      +||.. .++|..+.+++|.++||++|+|++++||.....+..+.+|+             +||||||++++..++|||||
T Consensus       734 ifG~~~~~~P~~~~vtrW~~dp~s~GsYs~~~pG~~~~~~~~L~~P~~~~~~~p~~~~~~grL~FAGE~Ts~~~~gtveG  813 (852)
T 2xag_A          734 IFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHG  813 (852)
T ss_dssp             HHCTTTCCCCSEEEECCTTTCTTTSSSCEECBTTCCTTHHHHTTSCBCCCCSSTTCCCCCCCEEECSGGGCTTSTTSHHH
T ss_pred             HhCccccCCceEEEEEecCCCCCcCccccccCCCcchhhHHHHhCccccccccccccCCCCcEEEEehhHhCCCCcCHHH
Confidence            99854 46899999999999999999999999998766677777765             68999999999888899999


Q ss_pred             HHHHHHHHHHHHHHHHhccccc
Q 010995          426 GYLAGIDTGKAVVEKIRKDNER  447 (496)
Q Consensus       426 A~~SG~~aA~~il~~l~~~~~~  447 (496)
                      |+.||.+||++|++.+.+....
T Consensus       814 Ai~SG~RAA~~Il~~l~~~~~~  835 (852)
T 2xag_A          814 ALLSGLREAGRIADQFLGAMYT  835 (852)
T ss_dssp             HHHHHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHHHHHHHhhCCCCC
Confidence            9999999999999999765553

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=100.00  E-value=1.1e-45  Score=375.94  Aligned_cols=410  Identities=19%  Similarity=0.315  Sum_probs=284.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCc
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLR   84 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~   84 (496)
                      .++||+|||||++||+||++|+++|+ +|+|||+++++||++.+.+.+|..+|.|++++..    .++.+.++++++|+.
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~-~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~----~~~~~~~~~~~~g~~   78 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKAGL-SVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSP----DQTALISLLDELGLK   78 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCTTCCEEEETTEEEECSCCCBCT----TCHHHHHHHHHTTCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC-cEEEEECCCCCCCceeccccCCceeccCCeEecC----ccHHHHHHHHHcCCc
Confidence            45799999999999999999999999 6999999999999999988899999999999887    677899999999998


Q ss_pred             cccccCCCcceEEEcCCCcccC---------hhHHHHHHHHH---HHHHHHHhcccc---------ccchhHHHHHHhhh
Q 010995           85 TCFSDYTNARYNIYDRSGKIIP---------SGVAADSYKKA---VESAIANLKNLE---------ATNSNIGEVIKAAT  143 (496)
Q Consensus        85 ~~~~~~~~~~~~~~~~~g~~~~---------~~~~~~~~~~~---~~~~~~~~~~~~---------~~~~~~~~~~~~~~  143 (496)
                      .... +......++..+|....         .....+ +...   ++.+........         ....++.+++....
T Consensus        79 ~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~  156 (453)
T 2yg5_A           79 TFER-YREGESVYISSAGERTRYTGDSFPTNETTKKE-MDRLIDEMDDLAAQIGAEEPWAHPLARDLDTVSFKQWLINQS  156 (453)
T ss_dssp             EEEC-CCCSEEEEECTTSCEEEECSSSCSCCHHHHHH-HHHHHHHHHHHHHHHCSSCGGGSTTHHHHHSSBHHHHHHHHC
T ss_pred             cccc-ccCCCEEEEeCCCceeeccCCCCCCChhhHHH-HHHHHHHHHHHHhhcCCCCCCCCcchhhhhhccHHHHHHhhc
Confidence            6542 22222222222233211         111111 1111   111111111000         01123444444311


Q ss_pred             cCCCCCCChHHHHHHHHHhhccccccC-Cccc------ccccCC--------cceeeeCcccHHHHHHHHHHhhccCCCC
Q 010995          144 ELPSSPKTPLELAIDFILHDFEMAEVE-PIST------YVDFGE--------REFLVADERGYAHLLYKMAEEFLSTSDG  208 (496)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~--------~~~~~~~~~G~~~l~~~l~~~~~~~~~~  208 (496)
                           ........++.+.......... ..+.      +...+.        .......++|++.++++|++.       
T Consensus       157 -----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~-------  224 (453)
T 2yg5_A          157 -----DDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAEA-------  224 (453)
T ss_dssp             -----SCHHHHHHHHHHHCCCCCCSCTTSSBHHHHHHHHHHTTCHHHHHCHHHHTCEEETTCTHHHHHHHHHH-------
T ss_pred             -----CCHHHHHHHHHHHHhhcccCCcccccHHHHHHHhccCCcHhhhccCCCcceEEEcCChHHHHHHHHHh-------
Confidence                 0001111111111000000000 0000      000010        011235689999999999988       


Q ss_pred             CccccceeeCceeEEEEEcCCc-eEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEE
Q 010995          209 KILDNRLKLNKVVRELQHSRNG-VTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFL  287 (496)
Q Consensus       209 ~~~g~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l  287 (496)
                        .|++|++|++|++|..++++ |.|++ +|+++.||+||+|+|+..+.+  +.+.|++|+.+.++++++++++..||++
T Consensus       225 --lg~~i~~~~~V~~i~~~~~~~v~v~~-~~~~~~ad~VI~a~p~~~~~~--l~~~p~lp~~~~~~i~~~~~~~~~kv~l  299 (453)
T 2yg5_A          225 --LGDDVFLNAPVRTVKWNESGATVLAD-GDIRVEASRVILAVPPNLYSR--ISYDPPLPRRQHQMHQHQSLGLVIKVHA  299 (453)
T ss_dssp             --HGGGEECSCCEEEEEEETTEEEEEET-TTEEEEEEEEEECSCGGGGGG--SEEESCCCHHHHHHGGGEEECCEEEEEE
T ss_pred             --cCCcEEcCCceEEEEEeCCceEEEEE-CCeEEEcCEEEEcCCHHHHhc--CEeCCCCCHHHHHHHhcCCCcceEEEEE
Confidence              57899999999999998888 88887 677899999999999999887  5578999998899999999999999999


Q ss_pred             EcCCCCCCCCCCCceEEeecCCCCccccceeccccCCC-CcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCCCCC
Q 010995          288 KFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPG-SNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIP  366 (496)
Q Consensus       288 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~~~  366 (496)
                      .|++++|+.. +........ ......+|...  .+++ ..++++++.++.+..|..++++++++.++++|+++++....
T Consensus       300 ~~~~~~w~~~-~~~g~~~~~-~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~  375 (453)
T 2yg5_A          300 VYETPFWRED-GLSGTGFGA-SEVVQEVYDNT--NHEDDRGTLVAFVSDEKADAMFELSAEERKATILASLARYLGPKAE  375 (453)
T ss_dssp             EESSCGGGGG-TEEEEEECT-TSSSCEEEECC--CTTCSSEEEEEEEEHHHHHHHHHSCHHHHHHHHHHHHHHHHCGGGG
T ss_pred             EECCCCCCCC-CCCceeecC-CCCeEEEEeCC--CCCCCCCEEEEEeccHHHHHHhcCCHHHHHHHHHHHHHHHhCccCC
Confidence            9999999752 111112222 12222233321  2233 46777777776777888899999999999999999987667


Q ss_pred             CCCeeEecccCCCCCCCcccC-CCCCCCChHHHHHHhCCCCcEEEccccccCcCCccchHHHHHHHHHHHHHHHHHh
Q 010995          367 NATDILVPRWWNNRFQRGSYS-NYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIR  442 (496)
Q Consensus       367 ~~~~~~~~rw~~~~~~~g~~~-~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~  442 (496)
                      +|.++.+++|.+++|+.|+|. .+.||......+.+++|++||||||++++..++|++|||+.||.+||++|++.++
T Consensus       376 ~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~  452 (453)
T 2yg5_A          376 EPVVYYESDWGSEEWTRGCYAASFDLGGLHRYGADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIARSK  452 (453)
T ss_dssp             CCSEEEECCTTTCTTTCSSSCEEECTTHHHHHGGGTTCCBTTEEECCGGGCSTTTTSHHHHHHHHHHHHHHHHHHC-
T ss_pred             CccEEEEeecCCCCCCCCCCcCcCCCCccccchHHHhCCcCceEEeecccccccccchHHHHHHHHHHHHHHHHHhc
Confidence            888999999999999999986 6788865555567889999999999999877889999999999999999998763

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=100.00  E-value=7e-44  Score=378.50  Aligned_cols=412  Identities=27%  Similarity=0.470  Sum_probs=294.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeee-eCCcEEeecceEEecCCCCCCChHHHHHHhcCCc
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEK-FGGVSVELGAGWIAGVGGKESNPVWELASKSGLR   84 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~   84 (496)
                      .+||+|||||++||+||+.|+++|+ +|+|+|+++++|||++|.+ .+|..+|.|++++++   ...+++..+++++|++
T Consensus       336 ~~~v~viG~G~~Gl~aA~~l~~~g~-~v~v~E~~~~~ggri~T~~~~~G~~vd~Ga~~i~G---~~~np~~~l~~~lGl~  411 (776)
T 4gut_A          336 NKSVIIIGAGPAGLAAARQLHNFGI-KVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNG---CINNPVALMCEQLGIS  411 (776)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSSSSCTTCCEECCSTTCCEESSCCEEEC---CTTCHHHHHHHHHTCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-cEEEEecccceeceeeeccccCCeEeccCCeEEeC---CccChHHHHHHHhCCc
Confidence            5799999999999999999999999 7999999999999999976 468999999999987   3677889999999997


Q ss_pred             cccccCCCcceEEEcCCCcccChhHHH---HHHHHHHHHHHHHhcc---ccccch--hHHHHHHhhhcCCCCC-CChHHH
Q 010995           85 TCFSDYTNARYNIYDRSGKIIPSGVAA---DSYKKAVESAIANLKN---LEATNS--NIGEVIKAATELPSSP-KTPLEL  155 (496)
Q Consensus        85 ~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~  155 (496)
                      .......   ..++..+|.........   ..+....+........   ..+...  .+.+.+.......... ......
T Consensus       412 ~~~~~~~---~~l~~~~g~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~d~sl~~~~~~~~~~~l~~~gv~~~~l~~~  488 (776)
T 4gut_A          412 MHKFGER---CDLIQEGGRITDPTIDKRMDFHFNALLDVVSEWRKDKTQLQDVPLGEKIEEIYKAFIKESGIQFSELEGQ  488 (776)
T ss_dssp             CEECCSC---CCEECTTSCBCCHHHHHHHHHHHHHHHHHHHHHGGGCCGGGCCBHHHHHHHHHHHHHHHSCCCCCHHHHH
T ss_pred             ccccccc---cceEccCCcccchhHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhcCCCccchhHH
Confidence            5542221   23555666654432211   1222222222111111   111111  1111111111101111 111222


Q ss_pred             HHHHHHhhccccc---cCCc--------ccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEE
Q 010995          156 AIDFILHDFEMAE---VEPI--------STYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVREL  224 (496)
Q Consensus       156 ~~~~~~~~~~~~~---~~~~--------~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I  224 (496)
                      .+.+....++...   ...+        ..+..+++..  ....+|++.++++|++.           ++|++|++|++|
T Consensus       489 ~l~~~~~~l~~~~G~~l~~ls~~~~~~~~~~~~~~G~~--~~~~~G~~~l~~aLa~g-----------l~I~l~t~V~~I  555 (776)
T 4gut_A          489 VLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDH--TLLTPGYSVIIEKLAEG-----------LDIQLKSPVQCI  555 (776)
T ss_dssp             HHHHHHHHHHHHHTSCTTSBBTTTTTGGGGSCCCCSCE--EECTTCTHHHHHHHHTT-----------SCEESSCCEEEE
T ss_pred             HHHHHHHHHHHhcCCChHHcChhhhhhhhhHHhcCCCe--EEECChHHHHHHHHHhC-----------CcEEcCCeeEEE
Confidence            2222222111100   0000        0111223322  33478999999988754           579999999999


Q ss_pred             EEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCC-CCCceE
Q 010995          225 QHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCS-PGKEFF  303 (496)
Q Consensus       225 ~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~-~~~~~~  303 (496)
                      +.++++|+|++.+|++++||+||+|+|+.++++..+.|.|+||+.+.++++.++++++.||++.|+++||++. .+..++
T Consensus       556 ~~~~~~v~V~~~~G~~i~Ad~VIvA~P~~vL~~~~i~f~P~Lp~~~~~ai~~l~~g~~~KV~l~f~~~FW~~~~~g~~~f  635 (776)
T 4gut_A          556 DYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFF  635 (776)
T ss_dssp             ECSSSSEEEEETTCCEEEESEEEECCCHHHHHTTCSEEESCCCHHHHHHHHHEEEECCEEEEEECSSCTTHHHHTTCSEE
T ss_pred             EEcCCEEEEEECCCcEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHhCCCeeEEEEEEecCcccccccCCCCceE
Confidence            9999999999999989999999999999999866678999999999999999999999999999999999752 123344


Q ss_pred             Eeec---CCCCccccceeccccCCC-CcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCC-CCCCCCeeEecccCC
Q 010995          304 IYAH---ERRGYYTFWQHMENAYPG-SNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGP-DIPNATDILVPRWWN  378 (496)
Q Consensus       304 ~~~~---~~~~~~~~~~~~~~~~~~-~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~-~~~~~~~~~~~rw~~  378 (496)
                      .+..   +..+...++...  .+++ ..+|++++.++.+..+..++++|+++.++++|+++||. ..+.|..+.+++|.+
T Consensus       636 G~l~~~~~~~~~~~~~~d~--~p~g~~~vL~~~i~G~~a~~l~~lsdeel~~~~l~~L~~ifg~~~~~~P~~~~vt~W~~  713 (776)
T 4gut_A          636 GHVPPSASKRGLFAVFYDM--DPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWST  713 (776)
T ss_dssp             EECCSSGGGTTEEEEEEES--CTTSCSCEEEEEECTHHHHHHHTSCHHHHHHHHHHHHHHHTTTSCCCCCSEEEECCGGG
T ss_pred             EeecCCcCCCceEEEEecC--CCCCCceEEEEEecchhHHHHHcCCHHHHHHHHHHHHHHHhCcccccCcceEEEecCCC
Confidence            3321   222322332222  2233 46888888888888899999999999999999999985 457899999999999


Q ss_pred             CCCCCcccCCCCCCCChHHHHHHhCCC-CcEEEccccccCcCCccchHHHHHHHHHHHHHHH
Q 010995          379 NRFQRGSYSNYPIISDNQLVNSIRAPV-AGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVE  439 (496)
Q Consensus       379 ~~~~~g~~~~~~~g~~~~~~~~~~~p~-~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~  439 (496)
                      +||+.|+|+++.||.....+..+.+|+ ++||||||+++..++|+||||++||.+||++|+.
T Consensus       714 dp~s~Gsys~~~~g~~~~~~~~L~~p~~grL~FAGE~Ts~~~~gtveGAi~SG~RaA~~Ila  775 (776)
T 4gut_A          714 DPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKIAA  775 (776)
T ss_dssp             CTTTCCSEEEEBTTCCTHHHHHHHCCBTTTEEECSGGGCSSSCSSHHHHHHHHHHHHHHHHC
T ss_pred             CCccCCCCCccCCCCchhHHHHHhCcCCCcEEEEehhhcCCCCcCHHHHHHHHHHHHHHHHh
Confidence            999999999888888767778888886 8999999999988899999999999999999974

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=100.00  E-value=3e-43  Score=362.36  Aligned_cols=416  Identities=20%  Similarity=0.277  Sum_probs=280.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeee--eCCcEEeecceEEecCCCCCCChHHHHHHhcC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEK--FGGVSVELGAGWIAGVGGKESNPVWELASKSG   82 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~--~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lg   82 (496)
                      ..+||+|||||++||+||+.|+++|+ +|+|||+++++||++.+.+  ..++.+|.|+++++.    .+..+.++++++|
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~-~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~g  106 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPE----KHRIVREYIRKFD  106 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEET----TCHHHHHHHHHTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCC-eEEEEECCCCCCCceeeeccCCCCchhhcCcccccc----hHHHHHHHHHHhC
Confidence            46799999999999999999999999 7999999999999999887  468899999999987    6778899999999


Q ss_pred             Ccccccc-CCCcceEEEcCCCcccC-----------------hh---HHHHHHHHHHHHHHHHhcccc-------ccchh
Q 010995           83 LRTCFSD-YTNARYNIYDRSGKIIP-----------------SG---VAADSYKKAVESAIANLKNLE-------ATNSN  134 (496)
Q Consensus        83 l~~~~~~-~~~~~~~~~~~~g~~~~-----------------~~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~  134 (496)
                      +...... .....  ++..+|....                 ..   ...+.+...............       ....+
T Consensus       107 ~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  184 (498)
T 2iid_A          107 LRLNEFSQENDNA--WYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYS  184 (498)
T ss_dssp             CCEEEECSCCTTS--EEEETTEEEEHHHHHHCGGGGCCCCCGGGTTCCHHHHHHHHTHHHHHHHHHSCHHHHHHHHTTSB
T ss_pred             CCceeecccCCcc--EEEeCCeeecccccccCccccccCCCccccCCCHHHHHHHHHHHHHHHHhhccHHHHHHHhhhhh
Confidence            8753211 11111  1112232110                 00   011122111111110000000       00112


Q ss_pred             HHHHHHhhhcCCCCCCChHHHHHHHHHhhcc-ccc-cCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccc
Q 010995          135 IGEVIKAATELPSSPKTPLELAIDFILHDFE-MAE-VEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILD  212 (496)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g  212 (496)
                      +.+++....   ...........+.+..... ... ...+.....+.....+..+++|++.|+++|++.+         +
T Consensus       185 ~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l---------~  252 (498)
T 2iid_A          185 TKEYLIKEG---DLSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAMYRDI---------Q  252 (498)
T ss_dssp             HHHHHHHTS---CCCHHHHHHHHHHTTCGGGTTSBHHHHHHHHHHHTTCCCEEEETTCTTHHHHHHHHHT---------G
T ss_pred             HHHHHHHcc---CCCHHHHHHHHHhcCcccchhHHHHHHHHHHhccccCcceEEeCCcHHHHHHHHHHhc---------c
Confidence            333433200   0000000111111000000 000 0000000011112234456899999999999985         3


Q ss_pred             cceeeCceeEEEEEcCCceEEEeCCCc----EEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEE
Q 010995          213 NRLKLNKVVRELQHSRNGVTVKTEDGC----VYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLK  288 (496)
Q Consensus       213 ~~i~~~~~V~~I~~~~~~v~V~~~~G~----~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~  288 (496)
                      .+|++|++|++|+.++++|.|++.+|+    +++||+||+|+|+..+.+  +.|.|+||+.+.++++++++++..||++.
T Consensus       253 ~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~ad~vI~t~p~~~~~~--i~f~p~Lp~~~~~ai~~l~~~~~~kv~l~  330 (498)
T 2iid_A          253 DKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRL--IKFNPPLLPKKAHALRSVHYRSGTKIFLT  330 (498)
T ss_dssp             GGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTT--SEEESCCCHHHHHHHHHCCEECEEEEEEE
T ss_pred             cccccCCEEEEEEECCCeEEEEEecCCcccceEEeCEEEECCChHHHhh--eecCCCCCHHHHHHHHhCCCcceeEEEEE
Confidence            489999999999999889999887764    589999999999999876  77889999999999999999999999999


Q ss_pred             cCCCCCCCCCCCceEEeecCCCCccccceeccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCCCCCC-
Q 010995          289 FPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPN-  367 (496)
Q Consensus       289 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~~~~-  367 (496)
                      |+++||++..-.+...+.+. ......|.+ ...+.+..+|++++.++.+..|..++++++++.++++|+++++...+. 
T Consensus       331 ~~~~~w~~~~~~~~~~~~~~-~~~~~~~~s-~~~p~g~~~L~~~~~g~~a~~~~~~~~~~~~~~~l~~L~~~~g~~~~~~  408 (498)
T 2iid_A          331 CTTKFWEDDGIHGGKSTTDL-PSRFIYYPN-HNFTNGVGVIIAYGIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDI  408 (498)
T ss_dssp             ESSCGGGGGTCCSSEEEESS-TTCEEECCS-SCCTTSCEEEEEEEEHHHHHTTTTSCHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred             eCCCCccCCCccCCcccCCC-CcceEEECC-CCCCCCCcEEEEEeCCccHhhhhcCCHHHHHHHHHHHHHHHcCCChhhh
Confidence            99999976211112222221 111122222 122345678888777777788888999999999999999999743221 


Q ss_pred             ---CCeeEecccCCCCCCCcccCCCCCCCChHHHHHHhCCCCcEEEccccccCcCCccchHHHHHHHHHHHHHHHHHhcc
Q 010995          368 ---ATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKD  444 (496)
Q Consensus       368 ---~~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~~~  444 (496)
                         .....+++|.++||+.|+|+++.|+....+.+.+.+|.+||||||++++.. +|+|+||+.||.+||++|++.++..
T Consensus       409 ~~~~~~~~~~~W~~~p~~~G~~~~~~~~~~~~~~~~l~~p~~~l~fAGe~t~~~-~g~~~GAi~SG~raA~~i~~~l~~~  487 (498)
T 2iid_A          409 QSFCYPSVIQKWSLDKYAMGGITTFTPYQFQHFSDPLTASQGRIYFAGEYTAQA-HGWIDSTIKSGLRAARDVNLASENP  487 (498)
T ss_dssp             HHHEEEEEEEEGGGCTTTCSSEECCCTTHHHHHHHHHHCCBTTEEECSGGGSSS-SSCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhcCccEEEecCCCCCCCceeeecCCcchHHHHHHHhCCCCcEEEEEcccccC-CcCHHHHHHHHHHHHHHHHHHhcCC
Confidence               123678999999999999998899886667888999999999999999864 5899999999999999999998643

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=100.00  E-value=1.2e-42  Score=357.07  Aligned_cols=412  Identities=16%  Similarity=0.252  Sum_probs=278.4

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeee-----------------CCcEEeecceEEecC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKF-----------------GGVSVELGAGWIAGV   66 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~-----------------~g~~~d~G~~~~~~~   66 (496)
                      ++.+||+|||||++||+||+.|+++|+ +|+|||+++++||++.|.+.                 ++..+|.|++++.. 
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~-~v~v~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-   86 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAGY-KVTVLEARTRPGGRVWTARGGSEETDLSGETQKCTFSEGHFYNVGATRIPQ-   86 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSSCTTCCEEETTCEEECTTSCEEECCCCTTCEEESSCCCEET-
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEeccCCCCCceeeeccCcccccccchhhhhcccCCCcCCcchhhccc-
Confidence            356899999999999999999999999 79999999999999988764                 57889999999886 


Q ss_pred             CCCCCChHHHHHHhcCCccccccCCCcceEEE-cCC----CcccChhHH-HHHHHHHHHHHHHHh--ccccc-----cch
Q 010995           67 GGKESNPVWELASKSGLRTCFSDYTNARYNIY-DRS----GKIIPSGVA-ADSYKKAVESAIANL--KNLEA-----TNS  133 (496)
Q Consensus        67 ~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~-~~~----g~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~-----~~~  133 (496)
                         .+ .+.++++++|+.............++ ..+    |..++.... ...+....+......  ...++     ...
T Consensus        87 ---~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  162 (489)
T 2jae_A           87 ---SH-ITLDYCRELGVEIQGFGNQNANTFVNYQSDTSLSGQSVTYRAAKADTFGYMSELLKKATDQGALDQVLSREDKD  162 (489)
T ss_dssp             ---TS-THHHHHHHHTCCEEEECCCCTTSEEECCCSSTTTTCCEEHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCHHHHH
T ss_pred             ---HH-HHHHHHHHcCCceEEccccCCCceEEecCCcccCCccccHHHHhhhhhccHHHHHHHHHhccccccccchhhHH
Confidence               55 89999999999754322222112233 333    554442211 111111111100000  01110     111


Q ss_pred             hHHHHHHhhhcCCC----C----------------------CCChHHHHHHHHHhhccccccCCcccccccCCcceeeeC
Q 010995          134 NIGEVIKAATELPS----S----------------------PKTPLELAIDFILHDFEMAEVEPISTYVDFGEREFLVAD  187 (496)
Q Consensus       134 ~~~~~~~~~~~~~~----~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (496)
                      ++.+++..+-....    .                      +.+........+..        .+...........+...
T Consensus       163 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~  234 (489)
T 2jae_A          163 ALSEFLSDFGDLSDDGRYLGSSRRGYDSEPGAGLNFGTEKKPFAMQEVIRSGIGR--------NFSFDFGYDQAMMMFTP  234 (489)
T ss_dssp             HHHHHHHHHTTCCTTSCCCCCGGGCEEECCCBTTCCCEECCCCCHHHHHHHTTTT--------TGGGGGCTTTSSSEEEE
T ss_pred             HHHHHHHHhhhhhhccccccccchhhccCCCcccccCCCCCCcCHHHHhhhhHHH--------HHhhhhccccCccEEee
Confidence            34444442100000    0                      00000000000000        00000011112234566


Q ss_pred             cccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCC---cEEEcCEEEEecChHHHhcCCcccCC
Q 010995          188 ERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDG---CVYEANYVILSASIGVLQSDLISFKP  264 (496)
Q Consensus       188 ~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VI~A~p~~~l~~~li~~~p  264 (496)
                      ++|++.|+++|++.+.        .++|++|++|++|+.++++|+|++.+|   ++++||+||+|+|+..+.+  +.+  
T Consensus       235 ~gG~~~l~~~l~~~l~--------~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~~~~ad~vI~a~p~~~l~~--l~~--  302 (489)
T 2jae_A          235 VGGMDRIYYAFQDRIG--------TDNIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIPPHLVGR--LQN--  302 (489)
T ss_dssp             TTCTTHHHHHHHHHHC--------GGGEETTCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCHHHHTT--SEE--
T ss_pred             cCCHHHHHHHHHHhcC--------CCeEEECCEEEEEEEcCCeEEEEEecCCeEEEEECCEEEECCCHHHHHh--Ccc--
Confidence            8999999999999852        168999999999999999999988776   6799999999999999986  434  


Q ss_pred             CCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCC-CCCceEEeecCCCCccccceeccccCCCCcEEEE-Eeccccchhcc
Q 010995          265 PLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCS-PGKEFFIYAHERRGYYTFWQHMENAYPGSNILVV-TLTNGESKRVE  342 (496)
Q Consensus       265 ~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~-~~~~~~a~~~~  342 (496)
                      ++|+.+.++++++++++..||++.|+++||++. ...+.+...+  .+...++........+..+++. ++.+..+..|.
T Consensus       303 ~l~~~~~~~l~~~~~~~~~kv~l~~~~~~w~~~~~~~g~~~~~~--~~~~~~~~~s~~~~~~~~~l~~~~~~g~~~~~~~  380 (489)
T 2jae_A          303 NLPGDVLTALKAAKPSSSGKLGIEYSRRWWETEDRIYGGASNTD--KDISQIMFPYDHYNSDRGVVVAYYSSGKRQEAFE  380 (489)
T ss_dssp             CCCHHHHHHHHTEECCCEEEEEEEESSCHHHHTTCCCSCEEEES--STTCEEECCSSSTTSSCEEEEEEEEETHHHHHHH
T ss_pred             CCCHHHHHHHHhCCCccceEEEEEeCCCCccCCCCcccccccCC--CCceEEEeCCCCCCCCCCEEEEEeeCCchhhhhh
Confidence            688888999999999999999999999999753 1222232222  2222222221111112456664 55667777898


Q ss_pred             cCCcHHHHHHHHHHHHHhcCC-CCCCCCeeEecccCCCCCCCcccCCCC------CCCChHHHHHHhCCCCcEEEccccc
Q 010995          343 AQPDEETLKEAMEVLQDMFGP-DIPNATDILVPRWWNNRFQRGSYSNYP------IISDNQLVNSIRAPVAGIFFTGEHT  415 (496)
Q Consensus       343 ~~~~ee~~~~~~~~L~~~~~~-~~~~~~~~~~~rw~~~~~~~g~~~~~~------~g~~~~~~~~~~~p~~~l~~aGd~~  415 (496)
                      .++++++++.++++|+++++. ...++....+++|.+++|+.|+|+.+.      |+......+.+++|.+||||||+++
T Consensus       381 ~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~W~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~faG~~~  460 (489)
T 2jae_A          381 SLTHRQRLAKAIAEGSEIHGEKYTRDISSSFSGSWRRTKYSESAWANWAGSGGSHGGAATPEYEKLLEPVDKIYFAGDHL  460 (489)
T ss_dssp             TSCHHHHHHHHHHHHHHHHCGGGGSSEEEEEEEEGGGSTTTSCSSCEETTC-------CCHHHHHHTSCBTTEEECSGGG
T ss_pred             cCCHHHHHHHHHHHHHHHcCcchhhhccccEEEEcCCCCCCCCcchhcccccCCCcccchhhHHHHhCCCCcEEEeEHHh
Confidence            999999999999999999975 235577778899999999999998776      8876677888999999999999999


Q ss_pred             cCcCCccchHHHHHHHHHHHHHHHHHhcc
Q 010995          416 SERFNGYVHGGYLAGIDTGKAVVEKIRKD  444 (496)
Q Consensus       416 ~~~~~g~~egA~~SG~~aA~~il~~l~~~  444 (496)
                      +. ++++++||+.||.+||++|++.+.++
T Consensus       461 ~~-~~~~v~gAi~sg~~aA~~i~~~l~~~  488 (489)
T 2jae_A          461 SN-AIAWQHGALTSARDVVTHIHERVAQE  488 (489)
T ss_dssp             BS-STTSHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             cc-CccHHHHHHHHHHHHHHHHHHHHhhc
Confidence            85 66899999999999999999988754

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=100.00  E-value=2.9e-42  Score=348.57  Aligned_cols=390  Identities=18%  Similarity=0.272  Sum_probs=265.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeC---CcEEeecceEEecCCCCC-CChHHHHHHhc
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFG---GVSVELGAGWIAGVGGKE-SNPVWELASKS   81 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~---g~~~d~G~~~~~~~~~~~-~~~~~~l~~~l   81 (496)
                      ++||||||||++||+||+.|+++|. +|+|||+++++||++.+.+.+   +..+|.|+++++.    . ++.++++++++
T Consensus         1 ~~dVvVIGaG~aGl~aA~~L~~~G~-~V~vlE~~~~~GG~~~t~~~~cipg~~~~~g~~~~~~----~~~~~~~~~~~~~   75 (431)
T 3k7m_X            1 MYDAIVVGGGFSGLKAARDLTNAGK-KVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHR----KHHPRLAAELDRY   75 (431)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHTTC-CEEEECSSSSSBTTCCEEECSSSTTCEEESSCCCBCT----TTCHHHHHHHHHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCC-eEEEEecCCCccCeecceeccCCCCceEecCCeeeCC----CCcHHHHHHHHHh
Confidence            3699999999999999999999999 699999999999999998877   9999999999987    5 78899999999


Q ss_pred             CCccccccCCCcceEEE-cCCCccc-----ChhHHHHHHHHHHHHHHHHhccc-----------cccchhHHHHHHhhhc
Q 010995           82 GLRTCFSDYTNARYNIY-DRSGKII-----PSGVAADSYKKAVESAIANLKNL-----------EATNSNIGEVIKAATE  144 (496)
Q Consensus        82 gl~~~~~~~~~~~~~~~-~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~  144 (496)
                      |++........  ...+ ..++...     +..... .+......+.......           .....++.+++...  
T Consensus        76 g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~d~s~~~~l~~~--  150 (431)
T 3k7m_X           76 GIPTAAASEFT--SFRHRLGPTAVDQAFPIPGSEAV-AVEAATYTLLRDAHRIDLEKGLENQDLEDLDIPLNEYVDKL--  150 (431)
T ss_dssp             TCCEEECCCCC--EECCBSCTTCCSSSSCCCGGGHH-HHHHHHHHHHHHHTTCCTTTCTTSSSCGGGCSBHHHHHHHH--
T ss_pred             CCeeeecCCCC--cEEEEecCCeecCCCCCCHHHHH-HHHHHHHHHHHHHHhcCCCCCccCcchhhhcCCHHHHHHhc--
Confidence            99865432211  1122 2223221     111111 1222222211111110           11112334444321  


Q ss_pred             CCCCCCChHHHHHHHHHhhc---cccccCCc---ccccccC--------CcceeeeCcccHHHHHHHHHHhhccCCCCCc
Q 010995          145 LPSSPKTPLELAIDFILHDF---EMAEVEPI---STYVDFG--------EREFLVADERGYAHLLYKMAEEFLSTSDGKI  210 (496)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~--------~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~  210 (496)
                        ... .........+....   ........   ..+...+        ....  ...+|++.+++++++.         
T Consensus       151 --~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~l~~~~~~~---------  216 (431)
T 3k7m_X          151 --DLP-PVSRQFLLAWAWNMLGQPADQASALWMLQLVAAHHYSILGVVLSLDE--VFSNGSADLVDAMSQE---------  216 (431)
T ss_dssp             --TCC-HHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSCHHHHHHTCCE--EETTCTHHHHHHHHTT---------
T ss_pred             --CCC-HHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHhcCCccceeecchhh--hcCCcHHHHHHHHHhh---------
Confidence              000 00111111111100   00000000   0000000        0011  3478999999998876         


Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcC
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFP  290 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~  290 (496)
                      .| +|++|++|++|+.++++++|++.+|++++||+||+|+|++.+++  +.+.|++|..+.+++..+.+....||.+.|+
T Consensus       217 ~g-~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~~~l~~--i~~~p~l~~~~~~~~~~~~~~~~~kv~~~~~  293 (431)
T 3k7m_X          217 IP-EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTWRR--IVFTPALPERRRSVIEEGHGGQGLKILIHVR  293 (431)
T ss_dssp             CS-CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCGGGGGG--SEEESCCCHHHHHHHHHCCCCCEEEEEEEEE
T ss_pred             CC-ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCcchHhh--eeeCCCCCHHHHHHHHhCCCcceEEEEEEEC
Confidence            57 99999999999999889999999998899999999999999987  6789999999999999999999999999999


Q ss_pred             CCCCCCCCCCceEEeecCCCCccccceeccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCCCCCCCCe
Q 010995          291 CKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATD  370 (496)
Q Consensus       291 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~  370 (496)
                      +++|      +++.  ..+......+.+. ....+..+++++..++.   +. ..+++   .+.+.|+++++ ... +.+
T Consensus       294 ~~~~------~i~~--~~d~~~~~~~~~~-~~~~~~~~l~~~~~g~~---~~-~~~~~---~~~~~l~~~~~-~~~-~~~  355 (431)
T 3k7m_X          294 GAEA------GIEC--VGDGIFPTLYDYC-EVSESERLLVAFTDSGS---FD-PTDIG---AVKDAVLYYLP-EVE-VLG  355 (431)
T ss_dssp             SCCT------TEEE--EBSSSSSEEEEEE-ECSSSEEEEEEEEETTT---CC-TTCHH---HHHHHHHHHCT-TCE-EEE
T ss_pred             CCCc------CceE--cCCCCEEEEEeCc-CCCCCCeEEEEEecccc---CC-CCCHH---HHHHHHHHhcC-CCC-ccE
Confidence            8874      2322  1222111222221 11134567777665443   32 33333   45567778775 333 778


Q ss_pred             eEecccCCCCCCCcccCCCCCCCChHHHHHHhCCCCcEEEccccccCcCCccchHHHHHHHHHHHHHHHH
Q 010995          371 ILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEK  440 (496)
Q Consensus       371 ~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~  440 (496)
                      +..++|..+||++|+|+.++||+....++.+++|++||||||++++..++||||||++||.+||++|+..
T Consensus       356 ~~~~~W~~d~~~~G~~~~~~~g~~~~~~~~l~~p~g~~~fAGe~t~~~~~g~~~GA~~sg~raa~~i~~~  425 (431)
T 3k7m_X          356 IDYHDWIADPLFEGPWVAPRVGQFSRVHKELGEPAGRIHFVGSDVSLEFPGYIEGALETAECAVNAILHS  425 (431)
T ss_dssp             EECCCTTTCTTTSSSSCCCCTTTTTTSSGGGGSCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHHC
T ss_pred             eEecccCCCCCCCCCCCCcCCCCCcccHHHHhCCCCcEEEEehhhhccCCeEehHHHHHHHHHHHHHHhh
Confidence            8899999999999999999999977788999999999999999999889999999999999999999864

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=100.00  E-value=1e-40  Score=341.17  Aligned_cols=405  Identities=16%  Similarity=0.274  Sum_probs=266.0

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCC------CCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChH
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENG------IEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPV   74 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G------~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~   74 (496)
                      |+. +++||+|||||++||+||++|+++|      + +|+|||+++++||+++|...+|+.+|.|++++..    .++.+
T Consensus         1 M~~-~~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~-~V~vlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~----~~~~~   74 (470)
T 3i6d_A            1 MSD-GKKHVVIIGGGITGLAAAFYMEKEIKEKNLPL-ELTLVEASPRVGGKIQTVKKDGYIIERGPDSFLE----RKKSA   74 (470)
T ss_dssp             -----CEEEEEECCSHHHHHHHHHHHHHHTTTTCSE-EEEEECSSSSSCTTCCEECCTTCCEESSCCCEET----TCTHH
T ss_pred             CCC-CCCcEEEECCCHHHHHHHHHHHHhccccCCCC-CEEEEECCCCCCceEEEeccCCEEeccChhhhhh----CCHHH
Confidence            533 4689999999999999999999999      8 7999999999999999999999999999999987    78899


Q ss_pred             HHHHHhcCCccccccCCCcceEEEcCCCccc--ChhHH-------HHHHH-HH------HHHHHHHhc--cccccchhHH
Q 010995           75 WELASKSGLRTCFSDYTNARYNIYDRSGKII--PSGVA-------ADSYK-KA------VESAIANLK--NLEATNSNIG  136 (496)
Q Consensus        75 ~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~--~~~~~-------~~~~~-~~------~~~~~~~~~--~~~~~~~~~~  136 (496)
                      +++++++|+.......... ..++..+|...  +....       ...+. ..      .........  .......++.
T Consensus        75 ~~l~~~lgl~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  153 (470)
T 3i6d_A           75 PQLVKDLGLEHLLVNNATG-QSYVLVNRTLHPMPKGAVMGIPTKIAPFVSTGLFSLSGKARAAMDFILPASKTKDDQSLG  153 (470)
T ss_dssp             HHHHHHTTCCTTEEECCCC-CEEEECSSCEEECCC---------------------CCSHHHHHHHHSCCCSSSSCCBHH
T ss_pred             HHHHHHcCCcceeecCCCC-ccEEEECCEEEECCCCcccCCcCchHHhhccCcCCHHHHHHHhcCcccCCCCCCCCcCHH
Confidence            9999999998665321111 12223444432  21110       00000 00      000111111  0111122344


Q ss_pred             HHHHhhhcCCCCCCChHHHHHHHHHhhccccccCCcc------cccc-------------------------cCCcceee
Q 010995          137 EVIKAATELPSSPKTPLELAIDFILHDFEMAEVEPIS------TYVD-------------------------FGEREFLV  185 (496)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-------------------------~~~~~~~~  185 (496)
                      +++....     .....+.....+...........++      .+..                         ......+.
T Consensus       154 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (470)
T 3i6d_A          154 EFFRRRV-----GDEVVENLIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQLTAKKQGQFQ  228 (470)
T ss_dssp             HHHHHHS-----CHHHHHHTHHHHHHHTTCSCTTTBBHHHHCGGGCC-------------------------------EE
T ss_pred             HHHHHhc-----CHHHHHHhccchhcEEecCCHHHhhHHHHHHHHHHHHHhcCcHHHHHHhhccccccccccccCCceEE
Confidence            4443210     0000000111110000000000000      0000                         00011344


Q ss_pred             eCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCC
Q 010995          186 ADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPP  265 (496)
Q Consensus       186 ~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~  265 (496)
                      ..++|++.+++.|++.+.        .++|++|++|++|+.++++|.|++.+|++++||+||+|+|+..+.+  +...|+
T Consensus       229 ~~~~g~~~l~~~l~~~l~--------~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vi~a~p~~~~~~--l~~~~~  298 (470)
T 3i6d_A          229 TLSTGLQTLVEEIEKQLK--------LTKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPHKAAAG--MLSELP  298 (470)
T ss_dssp             EETTCTHHHHHHHHHTCC--------SEEEECSCCEEEEEECSSSEEEEESSSCEEEESEEEECSCHHHHHH--HTTTST
T ss_pred             EeCChHHHHHHHHHHhcC--------CCEEEeCCceEEEEEcCCeEEEEECCCCEEECCEEEECCCHHHHHH--HcCCch
Confidence            568999999999999853        2689999999999999989999999998899999999999999987  323332


Q ss_pred             CcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCC-CCceEEeecCCCCcc-cccee--ccc-cCCCCcEEEEEeccccchh
Q 010995          266 LPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSP-GKEFFIYAHERRGYY-TFWQH--MEN-AYPGSNILVVTLTNGESKR  340 (496)
Q Consensus       266 l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~-~~~~~~~~~~~~~~~-~~~~~--~~~-~~~~~~vl~~~~~~~~a~~  340 (496)
                          ..++++.+++.++.++++.|++++|+... +.+++....+..... ..|.+  ++. .+.+..++.+++.+..+..
T Consensus       299 ----~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~~~~~~~  374 (470)
T 3i6d_A          299 ----AISHLKNMHSTSVANVALGFPEGSVQMEHEGTGFVISRNSDFAITACTWTNKKWPHAAPEGKTLLRAYVGKAGDES  374 (470)
T ss_dssp             ----THHHHHTCEEEEEEEEEEEESSTTCCCSSCSSEEEECSTTCCSEEEEEEHHHHCGGGSCTTCEEEEEEECCSSCCG
T ss_pred             ----hhHHHhcCCCCceEEEEEEECchhcCCCCCCeEEEccCCCCCCceEEEEEcCcCCCcCCCCCEEEEEEECCCCCcc
Confidence                25788899999999999999999997632 334444332222111 23332  122 2334566777776666777


Q ss_pred             cccCCcHHHHHHHHHHHHHhcCCCCCCCCeeEecccCCCCCCCcccCCCCCCCCh---HHHHHHhCCCCcEEEccccccC
Q 010995          341 VEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDN---QLVNSIRAPVAGIFFTGEHTSE  417 (496)
Q Consensus       341 ~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~---~~~~~~~~p~~~l~~aGd~~~~  417 (496)
                      +..++++++++.++++|.+++|.. ++|....+++|.+      +++.+.+|+..   ...+.+.+|.+||||||+++..
T Consensus       375 ~~~~~~~~~~~~~~~~l~~~~g~~-~~p~~~~~~~w~~------a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~g  447 (470)
T 3i6d_A          375 IVDLSDNDIINIVLEDLKKVMNIN-GEPEMTCVTRWHE------SMPQYHVGHKQRIKELREALASAYPGVYMTGASFEG  447 (470)
T ss_dssp             GGTSCHHHHHHHHHHHHGGGSCCC-SCCSEEEEEEEEE------EEEECBTTHHHHHHHHHHHHHHHSTTEEECSTTTSC
T ss_pred             ccCCCHHHHHHHHHHHHHHHhCCC-CCceEEEEEEcCC------ccCCCCCCHHHHHHHHHHHHHhhCCCEEEEeecCCC
Confidence            888999999999999999999864 5788889999965      67777788642   2445677788999999999864


Q ss_pred             cCCccchHHHHHHHHHHHHHHHHH
Q 010995          418 RFNGYVHGGYLAGIDTGKAVVEKI  441 (496)
Q Consensus       418 ~~~g~~egA~~SG~~aA~~il~~l  441 (496)
                         .++++|+.||.++|++|++.+
T Consensus       448 ---~gv~~a~~sG~~aA~~i~~~l  468 (470)
T 3i6d_A          448 ---VGIPDCIDQGKAAVSDALTYL  468 (470)
T ss_dssp             ---CSHHHHHHHHHHHHHHHHHHH
T ss_pred             ---CCHHHHHHHHHHHHHHHHHHh
Confidence               469999999999999999876

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=100.00  E-value=1.5e-39  Score=333.14  Aligned_cols=408  Identities=17%  Similarity=0.201  Sum_probs=261.0

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHh
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASK   80 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~   80 (496)
                      |....++||+|||||++||+||+.|+++|+ +|+|||+++++|||++|.+.+|+.+|.|++++..    .++.+.+++++
T Consensus        11 ~~~~~~~~v~iiG~G~~Gl~aa~~l~~~g~-~v~v~E~~~~~GGr~~t~~~~g~~~~~g~~~~~~----~~~~~~~~~~~   85 (478)
T 2ivd_A           11 MPRTTGMNVAVVGGGISGLAVAHHLRSRGT-DAVLLESSARLGGAVGTHALAGYLVEQGPNSFLD----REPATRALAAA   85 (478)
T ss_dssp             ------CCEEEECCBHHHHHHHHHHHTTTC-CEEEECSSSSSBTTCCEEEETTEEEESSCCCEET----TCHHHHHHHHH
T ss_pred             CCCCCCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEEcCCCCCceeeeeccCCeeeecChhhhhh----hhHHHHHHHHH
Confidence            444567899999999999999999999999 6999999999999999999999999999999987    67889999999


Q ss_pred             cCCccccccCC-CcceEEEcCCCccc--ChhHHHHHH-------HHHHHHHHHHhccc--cccchhHHHHHHhhhcCCCC
Q 010995           81 SGLRTCFSDYT-NARYNIYDRSGKII--PSGVAADSY-------KKAVESAIANLKNL--EATNSNIGEVIKAATELPSS  148 (496)
Q Consensus        81 lgl~~~~~~~~-~~~~~~~~~~g~~~--~~~~~~~~~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  148 (496)
                      +|+........ .....++..+|..+  +.... ..+       ..........+...  .....++.+++....     
T Consensus        86 ~gl~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~-----  159 (478)
T 2ivd_A           86 LNLEGRIRAADPAAKRRYVYTRGRLRSVPASPP-AFLASDILPLGARLRVAGELFSRRAPEGVDESLAAFGRRHL-----  159 (478)
T ss_dssp             TTCGGGEECSCSSCCCEEEEETTEEEECCCSHH-HHHTCSSSCHHHHHHHHGGGGCCCCCTTCCCBHHHHHHHHT-----
T ss_pred             cCCcceeeecCccccceEEEECCEEEECCCCHH-HhccCCCCCHHHHHHHhhhhhcCCCCCCCCCCHHHHHHHhh-----
Confidence            99975443221 11122333455532  22111 110       00111111111110  011223444444310     


Q ss_pred             CCChHHHHHHHHHhh-ccc--cccC----------------Cc-cccc----------c-cCCc----ceeeeCcccHHH
Q 010995          149 PKTPLELAIDFILHD-FEM--AEVE----------------PI-STYV----------D-FGER----EFLVADERGYAH  193 (496)
Q Consensus       149 ~~~~~~~~~~~~~~~-~~~--~~~~----------------~~-~~~~----------~-~~~~----~~~~~~~~G~~~  193 (496)
                      .....+..+..+... +..  ....                .+ ....          . ....    .....+++|++.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~  239 (478)
T 2ivd_A          160 GHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQV  239 (478)
T ss_dssp             CHHHHHHTHHHHHHHHHCCCTTTBBHHHHCHHHHHHHHHHSSHHHHHHHHHHHHTCC----CCSCCCCCCEEEETTCTHH
T ss_pred             CHHHHHHHHHHHhceeecCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHHhhhccccccCcccccccccccEEEECCCHHH
Confidence            000000000000000 000  0000                00 0000          0 0001    234556899999


Q ss_pred             HHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEe---CCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHH
Q 010995          194 LLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKT---EDGCVYEANYVILSASIGVLQSDLISFKPPLPKWK  270 (496)
Q Consensus       194 l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~---~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~  270 (496)
                      |+++|++.         .|++|++|++|++|..+++++.|++   .+|++++||+||+|+|+..+.+ +   .|++++..
T Consensus       240 l~~~l~~~---------lg~~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~ad~vV~a~~~~~~~~-l---l~~l~~~~  306 (478)
T 2ivd_A          240 LIDALAAS---------LGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAK-L---LRPLDDAL  306 (478)
T ss_dssp             HHHHHHHH---------HGGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHHHHH-H---HTTTCHHH
T ss_pred             HHHHHHHH---------hhhhEEcCCEEEEEEecCCeEEEEEeecCCCceEEcCEEEECCCHHHHHH-H---hhccCHHH
Confidence            99999998         4679999999999999888888887   6777899999999999999886 2   26688888


Q ss_pred             HHHHhhCCCcceeEEEEEcCCCCCCCCCCCceEEeecCCC-Cccccceec--cc-cCCCCcEEEEEeccccchhcccCCc
Q 010995          271 TEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERR-GYYTFWQHM--EN-AYPGSNILVVTLTNGESKRVEAQPD  346 (496)
Q Consensus       271 ~~~i~~~~~~~~~~v~l~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~~--~~-~~~~~~vl~~~~~~~~a~~~~~~~~  346 (496)
                      .++++.+++.++.++++.|++++|+.....+++....+.. ....+|.+.  .. .+++..++++++.+..+..+..+++
T Consensus       307 ~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~  386 (478)
T 2ivd_A          307 AALVAGIAYAPIAVVHLGFDAGTLPAPDGFGFLVPAEEQRRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQPGLVEQDE  386 (478)
T ss_dssp             HHHHHTCCBCCEEEEEEEECTTSSCCCCSSEEECCGGGCCSCCEEEEHHHHCGGGBSTTCEEEEEEEECTTCGGGGGSCH
T ss_pred             HHHHhcCCCCcEEEEEEEEccccCCCCCceEEEecCCCCCceEEEEEEcccCCCcCCCCCEEEEEEeCCcCCccccCCCH
Confidence            8999999999999999999999987522233332221211 112233321  11 2334567777777666667778899


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCeeEecccCCCCCCCcccCCCCCCCChH---HHHHHhCCCCcEEEccccccCcCCccc
Q 010995          347 EETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQ---LVNSIRAPVAGIFFTGEHTSERFNGYV  423 (496)
Q Consensus       347 ee~~~~~~~~L~~~~~~~~~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~---~~~~~~~p~~~l~~aGd~~~~~~~g~~  423 (496)
                      +++.+.++++|.++++.. ..|....+++|..      +++.+.+|+...   ..+.+.+ ++||||||+++..   +++
T Consensus       387 ~~~~~~~~~~l~~~~~~~-~~p~~~~~~~w~~------~~p~~~~g~~~~~~~~~~~~~~-~~~l~~aG~~~~g---~gv  455 (478)
T 2ivd_A          387 DALAALAREELKALAGVT-ARPSFTRVFRWPL------GIPQYNLGHLERVAAIDAALQR-LPGLHLIGNAYKG---VGL  455 (478)
T ss_dssp             HHHHHHHHHHHHHHHCCC-SCCSEEEEEEESS------CCBCCBTTHHHHHHHHHHHHHT-STTEEECSTTTSC---CSH
T ss_pred             HHHHHHHHHHHHHHhCCC-CCCcEEEEEECCC------cccCCCcCHHHHHHHHHHHHhh-CCCEEEEccCCCC---CCH
Confidence            999999999999999754 4677788899965      566677776322   1223333 6899999999842   469


Q ss_pred             hHHHHHHHHHHHHHHHHHhc
Q 010995          424 HGGYLAGIDTGKAVVEKIRK  443 (496)
Q Consensus       424 egA~~SG~~aA~~il~~l~~  443 (496)
                      +||+.||.+||++|+..++.
T Consensus       456 ~gA~~SG~~aA~~i~~~l~~  475 (478)
T 2ivd_A          456 NDCIRNAAQLADALVAGNTS  475 (478)
T ss_dssp             HHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999887754

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=100.00  E-value=6.2e-39  Score=328.20  Aligned_cols=405  Identities=15%  Similarity=0.236  Sum_probs=264.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC--CCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENG--IEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSG   82 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G--~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lg   82 (496)
                      +++||+|||||++||+||++|+++|  + +|+|||+++++||++.|.+.+|+.+|.|++++..    .+..+.++++++|
T Consensus         3 ~~~~v~IiGaG~~Gl~~A~~L~~~g~~~-~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~----~~~~~~~l~~~lg   77 (475)
T 3lov_A            3 SSKRLVIVGGGITGLAAAYYAERAFPDL-NITLLEAGERLGGKVATYREDGFTIERGPDSYVA----RKHILTDLIEAIG   77 (475)
T ss_dssp             CSCEEEEECCBHHHHHHHHHHHHHCTTS-EEEEECSSSSSBTTCCEECSTTCCEESSCCCEET----TSTHHHHHHHHTT
T ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCC-CEEEEECCCCCCceeEEEeeCCEEEecCchhhhc----ccHHHHHHHHHcC
Confidence            3689999999999999999999999  8 7999999999999999999999999999999987    7889999999999


Q ss_pred             CccccccCCCcceEEEcCCCcccC--hhH-------HHHH--------HHH-HHHHHHHHhccc---cccchhHHHHHHh
Q 010995           83 LRTCFSDYTNARYNIYDRSGKIIP--SGV-------AADS--------YKK-AVESAIANLKNL---EATNSNIGEVIKA  141 (496)
Q Consensus        83 l~~~~~~~~~~~~~~~~~~g~~~~--~~~-------~~~~--------~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~  141 (496)
                      +.......... ..+...+|...+  ...       ....        ... ............   .....++.+|+..
T Consensus        78 ~~~~~~~~~~~-~~~~~~~g~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~  156 (475)
T 3lov_A           78 LGEKLVRNNTS-QAFILDTGGLHPIPKGAVMGIPTDLDLFRQTTLLTEEEKQEVADLLLHPSDSLRIPEQDIPLGEYLRP  156 (475)
T ss_dssp             CGGGEEECCCC-CEEEEETTEEEECCSSEETTEESCHHHHTTCSSSCHHHHHHHHHHHHSCCTTCCCCSSCCBHHHHHHH
T ss_pred             CcceEeecCCC-ceEEEECCEEEECCCcccccCcCchHHHhhccCCChhHHHHhhCcccCCcccccCCCCCcCHHHHHHH
Confidence            98765322111 112223443322  100       0000        001 111111101100   1112233444432


Q ss_pred             hhcCCCCCCChHHHHHHHHHhhccccccCCcc------cc----------c------c------------cCCcceeeeC
Q 010995          142 ATELPSSPKTPLELAIDFILHDFEMAEVEPIS------TY----------V------D------------FGEREFLVAD  187 (496)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~----------~------~------------~~~~~~~~~~  187 (496)
                      ...     ....+...+.+...........++      .+          .      .            ......+...
T Consensus       157 ~~~-----~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (475)
T 3lov_A          157 RLG-----DALVEKLIEPLLSGIYAGNIDQMSTFATYPQFVANEQKAGSLFEGMRLMRPLDQLPQTPQTTIKATGQFLSL  231 (475)
T ss_dssp             HHC-----HHHHHHTHHHHHHGGGCCCTTTSBSTTTCHHHHHHHHHHSSHHHHHHHTCC--------------CCSEEEE
T ss_pred             HhC-----HHHHHHHHHHHhceeecCChHHcCHHHHHHHHHHHHHhcCcHHHHHHHhcccccccccccccccCCCcEEee
Confidence            100     000000001110000000000000      00          0      0            0012234566


Q ss_pred             cccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCc
Q 010995          188 ERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLP  267 (496)
Q Consensus       188 ~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~  267 (496)
                      ++|++.++++|++.+.        .++|++|++|++|+.++++|+|++.+| +++||+||+|+|+..+.+  +.+.+++ 
T Consensus       232 ~~G~~~l~~~l~~~l~--------~~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~ad~vV~a~p~~~~~~--ll~~~~~-  299 (475)
T 3lov_A          232 ETGLESLIERLEEVLE--------RSEIRLETPLLAISREDGRYRLKTDHG-PEYADYVLLTIPHPQVVQ--LLPDAHL-  299 (475)
T ss_dssp             TTCHHHHHHHHHHHCS--------SCEEESSCCCCEEEEETTEEEEECTTC-CEEESEEEECSCHHHHHH--HCTTSCC-
T ss_pred             CChHHHHHHHHHhhcc--------CCEEEcCCeeeEEEEeCCEEEEEECCC-eEECCEEEECCCHHHHHH--HcCccCH-
Confidence            8999999999999853        268999999999999999999999998 899999999999999987  3334433 


Q ss_pred             HHHHHHHhhCCCcceeEEEEEcCCCCCCCCCCCceEEeecCCCCcc-cccee--ccccCCCCcEEEEEeccccchhcccC
Q 010995          268 KWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYY-TFWQH--MENAYPGSNILVVTLTNGESKRVEAQ  344 (496)
Q Consensus       268 ~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~vl~~~~~~~~a~~~~~~  344 (496)
                          ++++.+++.++.+|++.|+++++....+.++++...+..... ..|.+  ++...|+..++.+++.+..+..+..+
T Consensus       300 ----~~~~~~~~~~~~~v~l~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~l~~~~~~~~~~~~~~~  375 (475)
T 3lov_A          300 ----PELEQLTTHSTATVTMIFDQQQSLPIEGTGFVVNRRAPYSITACTAIDQKWNHSAPDHTVLRAFVGRPGNDHLVHE  375 (475)
T ss_dssp             ----HHHHTCCEEEEEEEEEEEECCSSCSSSSSEEEECTTSSCSEEEEEEHHHHCTTTCTTEEEEEEEECBTTBCGGGGS
T ss_pred             ----HHHhcCCCCeEEEEEEEECCcCCCCCCCEEEEecCCCCCceEEEEEEcccCCCCCCCcEEEEEEeCCCCCCcccCC
Confidence                677899999999999999998843322334444333322211 12322  12223334556666666666778889


Q ss_pred             CcHHHHHHHHHHHHHhcCCCCCCCCeeEecccCCCCCCCcccCCCCCCCCh---HHHHHHhCCCCcEEEccccccCcCCc
Q 010995          345 PDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDN---QLVNSIRAPVAGIFFTGEHTSERFNG  421 (496)
Q Consensus       345 ~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~---~~~~~~~~p~~~l~~aGd~~~~~~~g  421 (496)
                      +++++++.++++|++++|.. ++|....+++|.+      +++.+.+|+..   ...+.+.+|.+||||||+++..   .
T Consensus       376 ~~e~~~~~~~~~L~~~~g~~-~~p~~~~v~~w~~------a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~g---~  445 (475)
T 3lov_A          376 SDEVLQQAVLQDLEKICGRT-LEPKQVIISRLMD------GLPAYTVGHADRIQRVREEVLAQYPGIYLAGLAYDG---V  445 (475)
T ss_dssp             CHHHHHHHHHHHHHHHHSSC-CCCSEEEEEEEEE------EEECCCTTHHHHHHHHHHHHHHHSTTEEECSTTTSC---S
T ss_pred             CHHHHHHHHHHHHHHHhCCC-CCCeEEEEEEccc------CCCCCCCChHHHHHHHHHHHHhhCCCEEEEccCCCC---C
Confidence            99999999999999999864 4788899999976      56677777632   2345566788999999999864   4


Q ss_pred             cchHHHHHHHHHHHHHHHHHhcccc
Q 010995          422 YVHGGYLAGIDTGKAVVEKIRKDNE  446 (496)
Q Consensus       422 ~~egA~~SG~~aA~~il~~l~~~~~  446 (496)
                      +|++|+.||.+||++|+..++....
T Consensus       446 g~~~a~~sG~~aA~~i~~~l~~~~~  470 (475)
T 3lov_A          446 GLPDCVASAKTMIESIELEQSHTDE  470 (475)
T ss_dssp             SHHHHHHHHHHHHHHHHHTC-----
T ss_pred             CHHHHHHHHHHHHHHHHHHhhcccc
Confidence            6999999999999999998875544

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=100.00  E-value=1.4e-38  Score=328.00  Aligned_cols=412  Identities=17%  Similarity=0.229  Sum_probs=261.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCcc
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRT   85 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~   85 (496)
                      ++||+|||||++||+||+.|+++|+ +|+|||+++++||+++|.+.+|+.+|.|++++..    .++.+.++++++|+..
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~-~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~----~~~~~~~~~~~lgl~~   87 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTE----SEGDVTFLIDSLGLRE   87 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECSSSSSCSSCCEEEETTEEEESSCCCBCC----CSHHHHHHHHHTTCGG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-cEEEEEeCCCCCCceeeeccCCeEEecCCccccc----CcHHHHHHHHHcCCcc
Confidence            5799999999999999999999999 7999999999999999999999999999999987    7788999999999976


Q ss_pred             ccccCCCcceEEEcCCCccc--ChhHHHH----------HHHHHHHHHHHHhcc---ccccchhHHHHHHhhhc------
Q 010995           86 CFSDYTNARYNIYDRSGKII--PSGVAAD----------SYKKAVESAIANLKN---LEATNSNIGEVIKAATE------  144 (496)
Q Consensus        86 ~~~~~~~~~~~~~~~~g~~~--~~~~~~~----------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~------  144 (496)
                      ...........++..+|..+  +......          .+....+.+......   ......++.+|+.....      
T Consensus        88 ~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~  167 (504)
T 1sez_A           88 KQQFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQMLLEPILWKNKKLSQVSDSHESVSGFFQRHFGKEVVDY  167 (504)
T ss_dssp             GEECCSSCCCEEEESSSSEEECCSSHHHHHHSSSSCHHHHHHHHTHHHHC----------CCCBHHHHHHHHHCHHHHHT
T ss_pred             cceeccCCCceEEEECCeEEECCCCHHHHhccccCCHHHHHHHhHhhhccCcccccccCCCCccHHHHHHHHcCHHHHHH
Confidence            54211111122344566543  2211110          011111111000000   01112334444432110      


Q ss_pred             ----CC--CCCCChHHHHHHHHHhh---ccc--cc-c-----CCcccc-----------cccCCcceeeeCcccHHHHHH
Q 010995          145 ----LP--SSPKTPLELAIDFILHD---FEM--AE-V-----EPISTY-----------VDFGEREFLVADERGYAHLLY  196 (496)
Q Consensus       145 ----~~--~~~~~~~~~~~~~~~~~---~~~--~~-~-----~~~~~~-----------~~~~~~~~~~~~~~G~~~l~~  196 (496)
                          +.  ....++.+++..+....   ++.  .. .     ..+...           ...........+++|++.|++
T Consensus       168 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~l~~  247 (504)
T 1sez_A          168 LIDPFVAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTD  247 (504)
T ss_dssp             THHHHHHHHHSCCGGGSBHHHHCHHHHHHHHHTSCHHHHHHHHTTC----------CCCSCCSTTCSCBEETTCTHHHHH
T ss_pred             HHHHHHccccCCChHHhhHHHHhHHHHHHHHHhCCHHHHHHHhhhcccccccccccchhhccccCCceEeeCcHHHHHHH
Confidence                00  00011111111111000   000  00 0     000000           000001123456899999999


Q ss_pred             HHHHhhccCCCCCccc-cceeeCceeEEEEEcCCc------eEEEeC--CC---cEEEcCEEEEecChHHHhcCCcc-cC
Q 010995          197 KMAEEFLSTSDGKILD-NRLKLNKVVRELQHSRNG------VTVKTE--DG---CVYEANYVILSASIGVLQSDLIS-FK  263 (496)
Q Consensus       197 ~l~~~~~~~~~~~~~g-~~i~~~~~V~~I~~~~~~------v~V~~~--~G---~~~~ad~VI~A~p~~~l~~~li~-~~  263 (496)
                      +|++.+         + ++|++|++|++|..++++      +.|++.  +|   ++++||+||+|+|+..+.+.+.. ..
T Consensus       248 ~l~~~l---------~~~~i~~~~~V~~I~~~~~~~~~~~~~~v~~~~~~g~~~~~~~ad~VI~a~p~~~l~~ll~~~~~  318 (504)
T 1sez_A          248 AICKDL---------REDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRG  318 (504)
T ss_dssp             HHHTTS---------CTTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSS
T ss_pred             HHHhhc---------ccceEEcCCeEEEEEecCCCCcccceEEEEEcCCCCccceeEECCEEEECCCHHHHHHHhhcccC
Confidence            999874         4 789999999999988777      666654  45   57899999999999999983210 11


Q ss_pred             CCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCC-CCceEEeecCC----CCcccccee--ccc-cCCCCcEEEEEecc
Q 010995          264 PPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSP-GKEFFIYAHER----RGYYTFWQH--MEN-AYPGSNILVVTLTN  335 (496)
Q Consensus       264 p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~-~~~~~~~~~~~----~~~~~~~~~--~~~-~~~~~~vl~~~~~~  335 (496)
                      +++++..   +..+++.++.+|++.|++++|+... ++.+++...+.    .....+|.+  ++. .+++..++++++.+
T Consensus       319 ~~~~~~~---l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~s~~~~~~~p~g~~~l~~~~~g  395 (504)
T 1sez_A          319 NPFLLNF---IPEVDYVPLSVVITTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFSSMMFPDRAPNNVYLYTTFVGG  395 (504)
T ss_dssp             SBCCCTT---SCCCCEEEEEEEEEEEEGGGBSSCCCSSEEECCGGGGGGTCCSSEEEEHHHHCGGGSCTTEEEEEEEEES
T ss_pred             CcccHHH---HhcCCCCceEEEEEEEchhhcCCCCCceEEEcCCCCCCCCCccceEEeeccccCCcCCCCCEEEEEEeCC
Confidence            2333221   5678888999999999999997532 33333322221    111122221  122 23345566677766


Q ss_pred             ccchhcccCCcHHHHHHHHHHHHHhcCCCCCCCCeeEecccCCCCCCCcccCCCCCCCChH--HHHHHhCCCCcEEEccc
Q 010995          336 GESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQ--LVNSIRAPVAGIFFTGE  413 (496)
Q Consensus       336 ~~a~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~--~~~~~~~p~~~l~~aGd  413 (496)
                      ..+..|..++++|+++.++++|+++++.. .+|.++.+.+|.+      +++.+.+|+...  ......+|++||||||+
T Consensus       396 ~~~~~~~~~~~ee~~~~v~~~L~~~~g~~-~~p~~~~~~~w~~------~~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~  468 (504)
T 1sez_A          396 SRNRELAKASRTELKEIVTSDLKQLLGAE-GEPTYVNHLYWSK------AFPLYGHNYDSVLDAIDKMEKNLPGLFYAGN  468 (504)
T ss_dssp             TTCGGGTTCCHHHHHHHHHHHHHHHHCBC-SCCSSEEEEEEEE------EEECCCTTHHHHHHHHHHHHHHSTTEEECCS
T ss_pred             CCcccccCCCHHHHHHHHHHHHHHHhCCC-CCCeEEEEeECCC------CCCccCcCHHHHHHHHHHHHHhCCCEEEEee
Confidence            66777888999999999999999999863 4688889999976      677777776321  12345567899999999


Q ss_pred             cccCcCCccchHHHHHHHHHHHHHHHHHhcc
Q 010995          414 HTSERFNGYVHGGYLAGIDTGKAVVEKIRKD  444 (496)
Q Consensus       414 ~~~~~~~g~~egA~~SG~~aA~~il~~l~~~  444 (496)
                      +++.   .+++||+.||.+||++|++.++..
T Consensus       469 ~~~g---~~v~gai~sG~~aA~~il~~l~~~  496 (504)
T 1sez_A          469 HRGG---LSVGKALSSGCNAADLVISYLESV  496 (504)
T ss_dssp             SSSC---SSHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cCCC---CCHHHHHHHHHHHHHHHHHHHhhc
Confidence            9863   589999999999999999988654

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=100.00  E-value=2.1e-38  Score=329.16  Aligned_cols=424  Identities=15%  Similarity=0.167  Sum_probs=265.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCC--------CCcEEEEeeCC-CC----------------CeEEEeeee-------CC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENG--------IEDILILEASD-RI----------------GGRVRNEKF-------GG   53 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G--------~~~V~vlEa~~-~~----------------GGr~~t~~~-------~g   53 (496)
                      +++|+|||||++||+||+.|+++|        + +|+|||+++ ++                |||+.+...       ++
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~-~V~v~E~~~~r~~~~~~g~~~~~~~g~~GGr~~t~~~~~~~~~~~~  134 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGI-DVQIYEADPDSFLHDRPGIKAIKVRGLKAGRVSAALVHNGDPASGD  134 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEE-EEEEECCCTTBGGGCC----CEECTTCEETTEEEEEECSSCGGGCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCc-eEEEEeccCcccccccchhhHHHhcCcCCceEEEEEccCCcccCCC
Confidence            468999999999999999999999        8 799999999 99                999999877       45


Q ss_pred             cEEeecceEEecCCCCCCChHHHHHHhc-CCccccccCC---CcceEE------EcCCCcc-cC----hhHHHHHHHHHH
Q 010995           54 VSVELGAGWIAGVGGKESNPVWELASKS-GLRTCFSDYT---NARYNI------YDRSGKI-IP----SGVAADSYKKAV  118 (496)
Q Consensus        54 ~~~d~G~~~~~~~~~~~~~~~~~l~~~l-gl~~~~~~~~---~~~~~~------~~~~g~~-~~----~~~~~~~~~~~~  118 (496)
                      ..+|.|+++++.    .+..++++++++ |+......+.   .....+      ...+|.. ..    .......+....
T Consensus       135 ~~~e~G~~~~~~----~~~~~~~~~~~l~gl~~~~~~~~~~~~~~~~i~~~~~i~~~~g~~~~~~~~~~~p~p~~~~~v~  210 (721)
T 3ayj_A          135 TIYEVGAMRFPE----IAGLTWHYASAAFGDAAPIKVFPNPGKVPTEFVFGNRVDRYVGSDPKDWEDPDSPTLKVLGVVA  210 (721)
T ss_dssp             EEEECSCCCEET----TCHHHHHHHHHHHCTTCBCCBCCCBTTBCEEEEETTEEEEESSSCGGGBSSTTCHHHHHHHHHH
T ss_pred             cEEecCCEEecC----ccHHHHHHHHHhcCCcccccccccCCCCceEEEecCceeeecCccceecccccccCHHHHHHHH
Confidence            899999999987    778889999999 9963211111   111212      0223332 11    110111121111


Q ss_pred             HHHHH----------------------Hhcc----------------------ccccch--hH-----HHHHHhhhc--C
Q 010995          119 ESAIA----------------------NLKN----------------------LEATNS--NI-----GEVIKAATE--L  145 (496)
Q Consensus       119 ~~~~~----------------------~~~~----------------------~~~~~~--~~-----~~~~~~~~~--~  145 (496)
                      ..+..                      .+..                      .+....  ..     .++....++  .
T Consensus       211 ~~~~~~~~e~~~~~~~~~~~~p~~v~~ll~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~w~~lla~~~d~~S~~~~~  290 (721)
T 3ayj_A          211 GGLVGNPQGENVAMYPIANVDPAKIAAILNAATPPADALERIQTKYWPEFIAQYDGLTLGAAVREIVTVAFEKGTLPPVD  290 (721)
T ss_dssp             HHHTCCSSSSCCCSSCBTTBCHHHHHHHHTCSSCCHHHHHHHHHTHHHHHHHHHTTBBHHHHHHHHHHHHHHHTSSCCGG
T ss_pred             HHHHHHhhhcccccccccccchhhHHHHHHhhhcchhhhhhhhhhhhhhhhhhhccchhhhHHHHHHHHhhcccchhHHH
Confidence            11000                      0000                      000000  00     111111000  0


Q ss_pred             CCCCC-ChHHHHHHHHHhhcc-----ccccCCcccc-----cccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccc
Q 010995          146 PSSPK-TPLELAIDFILHDFE-----MAEVEPISTY-----VDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNR  214 (496)
Q Consensus       146 ~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~-----~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~  214 (496)
                      .+... .......+.+. .+.     .......+..     ...+.......+.||++.|+++|++.+.       .|++
T Consensus       291 ~~L~~~~~~s~~~~~~~-~~~~~~gg~~~~~~~S~le~L~~~~~~~~~~~~~i~GG~~~L~~aLa~~l~-------~g~~  362 (721)
T 3ayj_A          291 GVLDVDESISYYVELFG-RFGFGTGGFKPLYNISLVEMMRLILWDYSNEYTLPVTENVEFIRNLFLKAQ-------NVGA  362 (721)
T ss_dssp             GTSCHHHHHHHHHHHHH-HHCSSSSCCGGGTTBBHHHHHHHHHTTTTCEECCSSSSTHHHHHHHHHHHH-------HHTT
T ss_pred             HHHHhccccHHHHHHHH-HHhhccCCCCCccchhHHHHHHHHhcCCccceeEECCcHHHHHHHHHHhcc-------cCCc
Confidence            00000 00000011111 011     0000011000     0011122345678999999999999953       1678


Q ss_pred             eeeCceeE--EEEEcCCc-------eEE-EeCCCc--EEEcCEEEEecChHHHhc----CCcc-------c---------
Q 010995          215 LKLNKVVR--ELQHSRNG-------VTV-KTEDGC--VYEANYVILSASIGVLQS----DLIS-------F---------  262 (496)
Q Consensus       215 i~~~~~V~--~I~~~~~~-------v~V-~~~~G~--~~~ad~VI~A~p~~~l~~----~li~-------~---------  262 (496)
                      |++|++|+  +|.+++++       |+| .+.+|+  +++||+||+|+|++.+..    ..|.       +         
T Consensus       363 I~l~~~V~~~~I~~~~~g~~~~~~~V~V~~~~~G~~~~~~aD~VIvTvP~~~L~~~~~r~~i~~~~~~~~~~~~~~~~~~  442 (721)
T 3ayj_A          363 GKLVVQVRQERVANACHSGTASARAQLLSYDSHNAVHSEAYDFVILAVPHDQLTPIVSRSGFEHAASQNLGDAGLGLETH  442 (721)
T ss_dssp             TSEEEEEECEEEEEEEECSSSSCCEEEEEEETTCCEEEEEESEEEECSCHHHHHHHHSSSCSSCEEEEEESCGGGTCCCE
T ss_pred             eEeCCEEEeeeEEECCCCCccccceEEEEEecCCceEEEEcCEEEECCCHHHHhhccccccccccccccccccccccccc
Confidence            99999999  99987554       888 456676  789999999999999952    1244       2         


Q ss_pred             -----CCC-C-c-------HHHHHHHhhCCCcceeEEEEEc-----CCCCCCCCCCC-ceEEeecCCCCccccce---ec
Q 010995          263 -----KPP-L-P-------KWKTEAIEKCDVMVYTKIFLKF-----PCKFWPCSPGK-EFFIYAHERRGYYTFWQ---HM  319 (496)
Q Consensus       263 -----~p~-l-~-------~~~~~~i~~~~~~~~~~v~l~~-----~~~~w~~~~~~-~~~~~~~~~~~~~~~~~---~~  319 (496)
                           .|+ | |       ..+.+++++++|++..||++.|     +++||++..+. ....+++.  +.-.++.   ..
T Consensus       443 ~~~~~~pplLlp~~~~~~~~~~~~Ai~~l~~~~s~Kv~l~~~~~~~~~~fW~~~~g~~i~~s~TD~--~~r~~~~~p~p~  520 (721)
T 3ayj_A          443 TYNQVYPPLLLSDSSPAANARIVTAIGQLHMARSSKVFATVKTAALDQPWVPQWRGEPIKAVVSDS--GLAASYVVPSPI  520 (721)
T ss_dssp             EEEEEBCSSCCCSSCHHHHHHHHHHHHTCCEECEEEEEEEEEGGGGGSTTSCEETTEECCEEEETT--TTEEEEEEECSC
T ss_pred             cccccCCcccCCcccccccHHHHHHHHhcCcccceEEEEEEccccCCCCcccccCCCCceeeecCC--CcceEEEeccCc
Confidence                 344 6 8       8899999999999999999999     99999874211 11233332  2111111   00


Q ss_pred             --cccCCCCcEEE-EEeccccchhc------ccCCcHHH-------HHHHHHHHH--HhcCCCC-----------C--CC
Q 010995          320 --ENAYPGSNILV-VTLTNGESKRV------EAQPDEET-------LKEAMEVLQ--DMFGPDI-----------P--NA  368 (496)
Q Consensus       320 --~~~~~~~~vl~-~~~~~~~a~~~------~~~~~ee~-------~~~~~~~L~--~~~~~~~-----------~--~~  368 (496)
                        +..+++.++++ .+..++++..|      ..++++|.       ++.++++|+  ++++...           .  .+
T Consensus       521 ~~d~~~~~~gvlL~sYtwg~dA~~~~~~~g~~~~~~~er~~~~~~~~~~~l~~la~~~~~p~~~~~~~~~~~~l~~~~~~  600 (721)
T 3ayj_A          521 VEDGQAPEYSSLLASYTWEDDSTRLRHDFGLYPQNPATETGTADGMYRTMVNRAYRYVKYAGASNAQPWWFYQLLAEART  600 (721)
T ss_dssp             C----CCSEEEEEEEEEETHHHHHHHTTCCSSSEESSSSSCCCHHHHHHHHHHTCCEECCTTCSSCEECHHHHHHHTSCS
T ss_pred             ccccCCCCCcEEEEEEeCccchhhhhccccccCCChHHhhhhhhHHHHHHHHHHhhhccCccccccccchhhhhhhhccc
Confidence              12234445555 45557778887      55666665       999999999  8886321           1  13


Q ss_pred             CeeEecccCCCCCCCcccCCCCCCCChH---HHH-----HHhCCCCcEEEccccccCcCCccchHHHHHHHHHHHHHHHH
Q 010995          369 TDILVPRWWNNRFQRGSYSNYPIISDNQ---LVN-----SIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEK  440 (496)
Q Consensus       369 ~~~~~~rw~~~~~~~g~~~~~~~g~~~~---~~~-----~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~  440 (496)
                      .+...++|.++| +.|+|..+.||+..+   +.+     .+.+|.++||||||+++. ++||+|||+.||++||..|+..
T Consensus       601 ~~~~~~dW~~dp-s~Gaf~~~~pgq~~~~~l~~~~~~~~~~~~~~gri~fAGe~~S~-~~GWieGAl~Sa~~Aa~~i~~~  678 (721)
T 3ayj_A          601 ADRFVFDWTTNK-TAGGFKLDMTGDHHQSNLCFRYHTHALAASLDNRFFIASDSYSH-LGGWLEGAFMSALNAVAGLIVR  678 (721)
T ss_dssp             TTCEEEEGGGST-TSSSEECCBTTTHHHHHHHHHGGGGGGCTTTCCCEEECSGGGSS-CTTSHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEeCCCCC-CCCccccCCCccchhhhhhhhhhhhccccCCCCCEEEeehhhcc-CCceehHHHHHHHHHHHHHHHH
Confidence            567899999999 999999999998321   111     234567999999999986 7899999999999999999999


Q ss_pred             Hhcccc
Q 010995          441 IRKDNE  446 (496)
Q Consensus       441 l~~~~~  446 (496)
                      ++....
T Consensus       679 ~~~~~~  684 (721)
T 3ayj_A          679 ANRGDV  684 (721)
T ss_dssp             HTTTCG
T ss_pred             hcCCCC
Confidence            987655

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=100.00  E-value=4.3e-37  Score=314.82  Aligned_cols=411  Identities=18%  Similarity=0.182  Sum_probs=255.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCC-cEEEEeeCCCCCeEEEeeee-CCcEEeecceEEecCCCCCCChHHHHHHhcCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIE-DILILEASDRIGGRVRNEKF-GGVSVELGAGWIAGVGGKESNPVWELASKSGL   83 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~-~V~vlEa~~~~GGr~~t~~~-~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl   83 (496)
                      ++||+|||||++||+||++|+++|.. +|+|||+++++||+++|... +|+.+|.|++++...+ ..+..+.++++++|+
T Consensus         2 ~~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t~~~~~g~~~d~G~~~~~~~~-~~~~~~~~l~~~lgl   80 (477)
T 3nks_A            2 GRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAG-ALGARTLLLVSELGL   80 (477)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCEEECTTSCEEESSCCCBCCCH-HHHHHHHHHHHHTTC
T ss_pred             CceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEEEeccCCeEEEeCCCcccCCC-cccHHHHHHHHHcCC
Confidence            47999999999999999999999982 39999999999999999775 5899999999986500 025668899999999


Q ss_pred             ccccccCCC----cceEEEcCCCccc--ChhH---HHH--HHH--HHHHHHHHHhc-cccccchhHHHHHHhhhc-----
Q 010995           84 RTCFSDYTN----ARYNIYDRSGKII--PSGV---AAD--SYK--KAVESAIANLK-NLEATNSNIGEVIKAATE-----  144 (496)
Q Consensus        84 ~~~~~~~~~----~~~~~~~~~g~~~--~~~~---~~~--~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----  144 (496)
                      .........    ....+...+|...  |...   ...  .+.  ........... .......++.+|+.....     
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~  160 (477)
T 3nks_A           81 DSEVLPVRGDHPAAQNRFLYVGGALHALPTGLRGLLRPSPPFSKPLFWAGLRELTKPRGKEPDETVHSFAQRRLGPEVAS  160 (477)
T ss_dssp             GGGEEEECTTSHHHHCEEEEETTEEEECCCSSCC---CCTTSCSCSSHHHHTTTTSCCCCSSCCBHHHHHHHHHCHHHHH
T ss_pred             cceeeecCCCCchhcceEEEECCEEEECCCChhhcccccchhhhHHHHHHHHhhhcCCCCCCCcCHHHHHHHhhCHHHHH
Confidence            855432110    0011222344332  1100   000  000  00000000000 001111223333332100     


Q ss_pred             -C--C----CCCCChHHHHHHHHHhhc---c--cccc--------C-----Cccccc-ccCCcceeeeCcccHHHHHHHH
Q 010995          145 -L--P----SSPKTPLELAIDFILHDF---E--MAEV--------E-----PISTYV-DFGEREFLVADERGYAHLLYKM  198 (496)
Q Consensus       145 -~--~----~~~~~~~~~~~~~~~~~~---~--~~~~--------~-----~~~~~~-~~~~~~~~~~~~~G~~~l~~~l  198 (496)
                       +  +    ....++.+++..+....+   +  ....        .     ....+. .......+..+++|++.++++|
T Consensus       161 ~~~~~~~~~~~~~~~~~ls~~~~~~~l~~~e~~~gsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l  240 (477)
T 3nks_A          161 LAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQALAERWSQWSLRGGLEMLPQAL  240 (477)
T ss_dssp             HTHHHHHHHHHSSCTTTBBHHHHCHHHHHHHHHHSCHHHHHHHC-----CCCCHHHHHHHHTTCSEEEETTCTTHHHHHH
T ss_pred             HHHHHHhcccccCCHHHhhHHHHHHHHHHHHHHcCCHHHHHHHhcccccCCchhhhhhhcccCccEEEECCCHHHHHHHH
Confidence             0  0    000000000000000000   0  0000        0     000000 0000112456689999999999


Q ss_pred             HHhhccCCCCCccccceeeCceeEEEEEcCCc-eEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhC
Q 010995          199 AEEFLSTSDGKILDNRLKLNKVVRELQHSRNG-VTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKC  277 (496)
Q Consensus       199 ~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~  277 (496)
                      ++.+.+      .|++|++|++|++|+.++++ +.|++.+ .++.||+||+|+|+..+.++    .+++++...+.+..+
T Consensus       241 ~~~l~~------~g~~i~~~~~V~~i~~~~~~~~~v~~~~-~~~~ad~vv~a~p~~~~~~l----l~~~~~~~~~~l~~~  309 (477)
T 3nks_A          241 ETHLTS------RGVSVLRGQPVCGLSLQAEGRWKVSLRD-SSLEADHVISAIPASVLSEL----LPAEAAPLARALSAI  309 (477)
T ss_dssp             HHHHHH------TTCEEECSCCCCEEEECGGGCEEEECSS-CEEEESEEEECSCHHHHHHH----SCGGGHHHHHHHHTC
T ss_pred             HHHHHh------cCCEEEeCCEEEEEEEcCCceEEEEECC-eEEEcCEEEECCCHHHHHHh----ccccCHHHHHHHhcC
Confidence            999877      69999999999999998777 8887754 58999999999999999872    233445677888999


Q ss_pred             CCcceeEEEEEcCCCCCCCCCCCceEEeecCCCC-cccccee--cc--ccCCCCcEEEEEeccccchhcc----cCCcHH
Q 010995          278 DVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRG-YYTFWQH--ME--NAYPGSNILVVTLTNGESKRVE----AQPDEE  348 (496)
Q Consensus       278 ~~~~~~~v~l~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~--~~--~~~~~~~vl~~~~~~~~a~~~~----~~~~ee  348 (496)
                      ++.++.+|++.|++++|+. .++++++...+... ...+|.+  +.  ..+++..++.+++.+..+..+.    .+++++
T Consensus       310 ~~~~~~~v~l~~~~~~~~~-~~~g~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~~~gg~~~~~~~~~~~~~~~~~  388 (477)
T 3nks_A          310 TAVSVAVVNLQYQGAHLPV-QGFGHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWLQTLEASGCVLSQEL  388 (477)
T ss_dssp             CEEEEEEEEEEETTCCCSS-CSSEEECCTTTCSSEEEEECHHHHCGGGSTTTTCEEEEEEECHHHHHHHHHSSCCCCHHH
T ss_pred             CCCcEEEEEEEECCCCCCC-CCceEEccCCCCCCceEEEEeccccCCCCCCCCceEEEEEECCccccccccccCCCCHHH
Confidence            9999999999999999964 24455544332222 1122332  11  1134566777777655444442    468999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCeeEecccCCCCCCCcccCCCCCCCChHHHH----HHhCCCCcEEEccccccCcCCccch
Q 010995          349 TLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVN----SIRAPVAGIFFTGEHTSERFNGYVH  424 (496)
Q Consensus       349 ~~~~~~~~L~~~~~~~~~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~----~~~~p~~~l~~aGd~~~~~~~g~~e  424 (496)
                      +++.++++|.+++|.. +++....+++|.+      +++.+.+|+. ....    .+.+..++|++||+|+..   .+++
T Consensus       389 ~~~~~~~~L~~~~g~~-~~~~~~~v~rw~~------a~p~~~~g~~-~~~~~~~~~l~~~~~~l~l~G~~~~G---~gv~  457 (477)
T 3nks_A          389 FQQRAQEAAATQLGLK-EMPSHCLVHLHKN------CIPQYTLGHW-QKLESARQFLTAHRLPLTLAGASYEG---VAVN  457 (477)
T ss_dssp             HHHHHHHHHHHHHCCC-SCCSEEEEEEEEE------EEECCBTTHH-HHHHHHHHHHHHTTCSEEECSTTTSC---CSHH
T ss_pred             HHHHHHHHHHHHhCCC-CCCcEEEEEEcCC------ccCCCCCCHH-HHHHHHHHHHHhcCCCEEEEccCCCC---CcHH
Confidence            9999999999999864 5788889999976      8888999874 3222    233334689999999854   3699


Q ss_pred             HHHHHHHHHHHHHHHH
Q 010995          425 GGYLAGIDTGKAVVEK  440 (496)
Q Consensus       425 gA~~SG~~aA~~il~~  440 (496)
                      +|+.||.+||++|+..
T Consensus       458 ~a~~sg~~aA~~il~~  473 (477)
T 3nks_A          458 DCIESGRQAAVSVLGT  473 (477)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999999864

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=100.00  E-value=1.9e-36  Score=313.01  Aligned_cols=408  Identities=12%  Similarity=0.136  Sum_probs=248.9

Q ss_pred             CCCC-CCCCEEEECCCHHHHHHHHHHHHC-CCCcEEEEeeCCCCCeEEEee-eeCCcEEeecceEEecCCCCCCChHHHH
Q 010995            1 MDST-SRSPVIIIGAGVSGISAGKILAEN-GIEDILILEASDRIGGRVRNE-KFGGVSVELGAGWIAGVGGKESNPVWEL   77 (496)
Q Consensus         1 m~~~-~~~dVvIIGaGiaGL~aA~~L~~~-G~~~V~vlEa~~~~GGr~~t~-~~~g~~~d~G~~~~~~~~~~~~~~~~~l   77 (496)
                      |+.+ .++||||||||+|||+||++|+++ |+ +|+|||+++++||+++|. ..+|+.+|.|+|+|+.    .++.++++
T Consensus         4 Ms~p~~~~DVvIIGaGisGLsaA~~L~k~~G~-~V~VlE~~~~~GG~~~T~~~~~G~~~D~G~h~~~~----~~~~v~~l   78 (513)
T 4gde_A            4 MTHPDISVDVLVIGAGPTGLGAAKRLNQIDGP-SWMIVDSNETPGGLASTDVTPEGFLYDVGGHVIFS----HYKYFDDC   78 (513)
T ss_dssp             --CCSEEEEEEEECCSHHHHHHHHHHHHHCCS-CEEEEESSSSCCGGGCEEECTTSCEEESSCCCCCC----CBHHHHHH
T ss_pred             CCCCCCCCCEEEECCcHHHHHHHHHHHhhCCC-CEEEEECCCCCcCCeeeEEecCCEEEEeCceEecC----CCHHHHHH
Confidence            4443 357999999999999999999985 99 699999999999999995 4689999999999987    78899999


Q ss_pred             HHhcCCcccc-ccCCCcceEEEcCCCcccChhH-----------HHHHHHHHHHHHHH-HhccccccchhHHHHHHhhh-
Q 010995           78 ASKSGLRTCF-SDYTNARYNIYDRSGKIIPSGV-----------AADSYKKAVESAIA-NLKNLEATNSNIGEVIKAAT-  143 (496)
Q Consensus        78 ~~~lgl~~~~-~~~~~~~~~~~~~~g~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-  143 (496)
                      +++++..... ...... . ....+|+.++.+.           .............. .....++.  ++.+|+.... 
T Consensus        79 ~~e~~~~~~~~~~~~~~-~-~i~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~g  154 (513)
T 4gde_A           79 LDEALPKEDDWYTHQRI-S-YVRCQGQWVPYPFQNNISMLPKEEQVKCIDGMIDAALEARVANTKPK--TFDEWIVRMMG  154 (513)
T ss_dssp             HHHHSCSGGGEEEEECC-E-EEEETTEEEESSGGGGGGGSCHHHHHHHHHHHHHHHHHHHTCCSCCC--SHHHHHHHHHH
T ss_pred             HHHhCCccceeEEecCc-e-EEEECCeEeecchhhhhhhcchhhHHHHHHHHHHHHHhhhccccccc--CHHHHHHHhhh
Confidence            9998765432 111121 2 2224555433211           11111111111111 11111222  2222222100 


Q ss_pred             ----cCCC-------CCCChHHHHHHHHHhhccccccC--------CcccccccCCcceeeeCcccHHHHHHHHHHhhcc
Q 010995          144 ----ELPS-------SPKTPLELAIDFILHDFEMAEVE--------PISTYVDFGEREFLVADERGYAHLLYKMAEEFLS  204 (496)
Q Consensus       144 ----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~  204 (496)
                          ....       ...++.++..++....+......        .................++|++.++++|++.+.+
T Consensus       155 ~~l~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~  234 (513)
T 4gde_A          155 TGIADLFMRPYNFKVWAVPTTKMQCAWLGERVAAPNLKAVTTNVILGKTAGNWGPNATFRFPARGGTGGIWIAVANTLPK  234 (513)
T ss_dssp             HHHHHHTHHHHHHHHHSSCGGGBCSGGGCSSCCCCCHHHHHHHHHHTCCCCSCBTTBEEEEESSSHHHHHHHHHHHTSCG
T ss_pred             hhhhhhhcchhhhhhccCChHHhhHHHHHHhhcccchhhhhhhhhhcccccccccccceeecccCCHHHHHHHHHHHHHh
Confidence                0000       00000000000000000000000        0000000111223445689999999999999887


Q ss_pred             CCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeE
Q 010995          205 TSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTK  284 (496)
Q Consensus       205 ~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~  284 (496)
                            .|++|++|++|++|..++++  |++.+|+++.||+||+|+|+..+.+. +   +  +....++...++|.+...
T Consensus       235 ------~g~~i~~~~~V~~I~~~~~~--v~~~~G~~~~ad~vI~t~P~~~l~~~-l---~--~~~~~~~~~~l~y~~~~~  300 (513)
T 4gde_A          235 ------EKTRFGEKGKVTKVNANNKT--VTLQDGTTIGYKKLVSTMAVDFLAEA-M---N--DQELVGLTKQLFYSSTHV  300 (513)
T ss_dssp             ------GGEEESGGGCEEEEETTTTE--EEETTSCEEEEEEEEECSCHHHHHHH-T---T--CHHHHHHHTTCCEEEEEE
T ss_pred             ------cCeeeecceEEEEEEccCCE--EEEcCCCEEECCEEEECCCHHHHHHh-c---C--chhhHhhhhcccCCceEE
Confidence                  79999999999999988765  45678999999999999999999872 2   1  234567778899999999


Q ss_pred             EEEEcCCCCCCCCCCCceEEeecCCCCcccc--ceecc-----------------------ccCCCCcEEEEEeccccch
Q 010995          285 IFLKFPCKFWPCSPGKEFFIYAHERRGYYTF--WQHME-----------------------NAYPGSNILVVTLTNGESK  339 (496)
Q Consensus       285 v~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~~~-----------------------~~~~~~~vl~~~~~~~~a~  339 (496)
                      |.+.++...........++.+.+....+..+  +.++.                       ...++...+..++.+....
T Consensus       301 v~l~~~~~~~~~~~~~~~~y~~~~~~~f~Ri~~~~n~sp~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (513)
T 4gde_A          301 IGVGVRGSRPERIGDKCWLYFPEDNCPFYRATIFSNYSPYNQPEASAALPTMQLADGSRPQSTEAKEGPYWSIMLEVSES  380 (513)
T ss_dssp             EEEEEESSCCTTTTTCCEEECCSTTCSCSEEECGGGTCGGGSCCTTCCEECCEETTSCCCSCCSEECCCEEEEEEEEEEB
T ss_pred             EEEEEeccccccccccceeeccCCCCceeEEEecCCCCcccCCCCCceEEEEEeccCCCcccccCCcceEEEEEecccch
Confidence            9998876644332111222222221111111  00000                       0011122333333333345


Q ss_pred             hcccCCcHHHHHHHHHHHHHhcCCCC-CCCCeeEecccCCCCCCCcccCCCCCCCChH---HHHHHhCCCCcEEEccccc
Q 010995          340 RVEAQPDEETLKEAMEVLQDMFGPDI-PNATDILVPRWWNNRFQRGSYSNYPIISDNQ---LVNSIRAPVAGIFFTGEHT  415 (496)
Q Consensus       340 ~~~~~~~ee~~~~~~~~L~~~~~~~~-~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~---~~~~~~~p~~~l~~aGd~~  415 (496)
                      .+..++++++++.++++|.++.+... +++++..+.||.+      +|+.+..|+...   .++.+..  .|||++|..-
T Consensus       381 ~~~~~~de~l~~~~~~~L~~~~~i~~~~~i~~~~v~r~~~------ayP~y~~~~~~~~~~~~~~l~~--~~l~~~GR~g  452 (513)
T 4gde_A          381 SMKPVNQETILADCIQGLVNTEMLKPTDEIVSTYHRRFDH------GYPTPTLEREGTLTQILPKLQD--KDIWSRGRFG  452 (513)
T ss_dssp             TTBCCCTTTHHHHHHHHHHHTTSSCTTCEEEEEEEEEEEE------EEECCBTTHHHHHHHHHHHHHH--TTEEECSTTT
T ss_pred             hccCCCHHHHHHHHHHHHHHhcCCCCccceEEEEEEECCC------eecccCHhHHHHHHHHHHHHhh--cCcEEecCCc
Confidence            56778999999999999999987543 4567888999976      899888887422   3444444  5999999877


Q ss_pred             cCcCC-ccchHHHHHHHHHHHHHHH
Q 010995          416 SERFN-GYVHGGYLAGIDTGKAVVE  439 (496)
Q Consensus       416 ~~~~~-g~~egA~~SG~~aA~~il~  439 (496)
                      ...|. ++|++|+.||++||+.|+.
T Consensus       453 ~~~Y~~~n~D~a~~~g~~aa~~I~~  477 (513)
T 4gde_A          453 SWRYEVGNQDHSFMLGVEAVDNIVN  477 (513)
T ss_dssp             TCCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             ccCcCCCCHHHHHHHHHHHHHHHHc
Confidence            66554 5899999999999999996

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=100.00  E-value=1.2e-36  Score=297.75  Aligned_cols=325  Identities=12%  Similarity=0.147  Sum_probs=228.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHH---CCCCcEEEEeeCCCCCeEEEeeee---CCcEEeecceEEecCCCCCCC---hHHH
Q 010995            6 RSPVIIIGAGVSGISAGKILAE---NGIEDILILEASDRIGGRVRNEKF---GGVSVELGAGWIAGVGGKESN---PVWE   76 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~---~G~~~V~vlEa~~~~GGr~~t~~~---~g~~~d~G~~~~~~~~~~~~~---~~~~   76 (496)
                      ++||+|||||++||+||+.|++   +|+ +|+|||+++.+||++.+.+.   .+..+|.|+.++..    ...   .+.+
T Consensus         1 m~dV~IIGaG~aGl~~A~~L~~~~~~G~-~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~----~~~~~~~~~~   75 (342)
T 3qj4_A            1 MAQVLIVGAGMTGSLCAALLRRQTSGPL-YLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITC----TPHYAKKHQR   75 (342)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHSCC-CCE-EEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEE----CSSHHHHTHH
T ss_pred             CCcEEEECCcHHHHHHHHHHHhhccCCc-eEEEEECCCCCccceeeeecCCCCCceEecCCceEEc----CchHHHHHHH
Confidence            3689999999999999999999   999 79999999999999888664   35678888887765    322   2222


Q ss_pred             HHHhc---CCccccccCCCcceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChH
Q 010995           77 LASKS---GLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPL  153 (496)
Q Consensus        77 l~~~l---gl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (496)
                      +++++   |+..   .+...   .   .+                                                   
T Consensus        76 ~~~~~~~~g~~~---~~~~~---~---~~---------------------------------------------------   95 (342)
T 3qj4_A           76 FYDELLAYGVLR---PLSSP---I---EG---------------------------------------------------   95 (342)
T ss_dssp             HHHHHHHTTSCE---ECCSC---E---ET---------------------------------------------------
T ss_pred             HHHHHHhCCCee---cCchh---h---cc---------------------------------------------------
Confidence            22221   1100   00000   0   00                                                   


Q ss_pred             HHHHHHHHhhccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEE
Q 010995          154 ELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTV  233 (496)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V  233 (496)
                                           ...... ...+...+|++.++++|++.         .|++|+++++|++|+.++++|+|
T Consensus        96 ---------------------~~~~~~-~~~~~~~~g~~~l~~~l~~~---------~g~~i~~~~~V~~i~~~~~~~~v  144 (342)
T 3qj4_A           96 ---------------------MVMKEG-DCNFVAPQGISSIIKHYLKE---------SGAEVYFRHRVTQINLRDDKWEV  144 (342)
T ss_dssp             ---------------------CCC--C-CEEEECTTCTTHHHHHHHHH---------HTCEEESSCCEEEEEECSSSEEE
T ss_pred             ---------------------eeccCC-ccceecCCCHHHHHHHHHHh---------cCCEEEeCCEEEEEEEcCCEEEE
Confidence                                 000000 11234478999999999988         57899999999999999999999


Q ss_pred             EeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCCCCceEEeecCCCCcc
Q 010995          234 KTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYY  313 (496)
Q Consensus       234 ~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~~~~~~~~~~~~~~~~  313 (496)
                      ++.+|++++||+||+|+|+..+.+++-.+.|.||+...+.++.++|.++.+|++.|++++|.+.+..++++. +.....+
T Consensus       145 ~~~~g~~~~ad~vV~A~p~~~~~~ll~~~~~~l~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~-~~~~~~~  223 (342)
T 3qj4_A          145 SKQTGSPEQFDLIVLTMPVPEILQLQGDITTLISECQRQQLEAVSYSSRYALGLFYEAGTKIDVPWAGQYIT-SNPCIRF  223 (342)
T ss_dssp             EESSSCCEEESEEEECSCHHHHTTCBSTHHHHSCHHHHHHHHTCCBCCEEEEEEECSSCC--CCSCSEEECS-SCSSEEE
T ss_pred             EECCCCEEEcCEEEECCCHHHHHHHhcccccccCHHHHHHHhcCCccccEEEEEEECCCCccCCceeeEEcc-CCcceEE
Confidence            998887789999999999999988332345668888889999999999999999999988876443444332 1111111


Q ss_pred             ccceecccc---CCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCCCCCCCCeeEecccCCCCCCCcccCCCC
Q 010995          314 TFWQHMENA---YPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSNYP  390 (496)
Q Consensus       314 ~~~~~~~~~---~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~rw~~~~~~~g~~~~~~  390 (496)
                      ..+++....   .++..+++....+..+..+.+++++++++.++++|.+++| ..++|..+.++||..      +.+.+.
T Consensus       224 ~~~~~~k~~r~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~~~p~~~~v~rW~~------a~p~~~  296 (342)
T 3qj4_A          224 VSIDNKKRNIESSEIGPSLVIHTTVPFGVTYLEHSIEDVQELVFQQLENILP-GLPQPIATKCQKWRH------SQVTNA  296 (342)
T ss_dssp             EEEHHHHTTCCCC-CCCEEEEEECHHHHHHTTTSCHHHHHHHHHHHHHHHSC-SCCCCSEEEEEEETT------CSBSSC
T ss_pred             EEccccCCCCCCCCCCceEEEECCHHHHHHhhcCCHHHHHHHHHHHHHHhcc-CCCCCceeeeccccc------cccccc
Confidence            112221111   1234577777776677778889999999999999999998 456789999999975      333332


Q ss_pred             CCCChHHHHHHh-CCCCcEEEccccccCcCCccchHHHHHHHHHHHHHHHH
Q 010995          391 IISDNQLVNSIR-APVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEK  440 (496)
Q Consensus       391 ~g~~~~~~~~~~-~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~  440 (496)
                      ....   ...+. .+.++|++||||+..   +++|+|+.||.+||++|++.
T Consensus       297 ~~~~---~~~~~~~~~~~l~laGd~~~g---~~v~~ai~sg~~aa~~i~~~  341 (342)
T 3qj4_A          297 AANC---PGQMTLHHKPFLACGGDGFTQ---SNFDGCITSALCVLEALKNY  341 (342)
T ss_dssp             CSSS---CSCEEEETTTEEEECSGGGSC---SSHHHHHHHHHHHHHHHTTC
T ss_pred             cCCC---cceeEecCCccEEEEccccCC---CCccHHHHHHHHHHHHHHhh
Confidence            1100   00112 355899999999965   68999999999999999764

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=100.00  E-value=9.7e-36  Score=300.23  Aligned_cols=394  Identities=14%  Similarity=0.111  Sum_probs=248.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCccc
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTC   86 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~~   86 (496)
                      +||+|||||++||+||++|+++|+ +|+|||+++++||++.+...+|+.+|.|++++...  ..++.+.++++++|+...
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~-~V~vlE~~~~~GG~~~~~~~~G~~~d~G~~~~~~~--~~~~~~~~l~~~lg~~~~   77 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGH-EVEVFERLPITGGRFTNLSYKGFQLSSGAFHMLPN--GPGGPLACFLKEVEASVN   77 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTC-EEEEECSSSSSBTTSSEEEETTEEEESSSCSCBTT--GGGSHHHHHHHHTTCCCC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC-ceEEEeCCCCCCCceeeeccCCcEEcCCCceEecC--CCccHHHHHHHHhCCCce
Confidence            489999999999999999999999 79999999999999999999999999998765431  145678999999998765


Q ss_pred             cccCCCcceEEEc-CC--------CcccChhHHHH-----HHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCCh
Q 010995           87 FSDYTNARYNIYD-RS--------GKIIPSGVAAD-----SYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTP  152 (496)
Q Consensus        87 ~~~~~~~~~~~~~-~~--------g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (496)
                      ....... ...+. .+        +..+.......     ........... .........++.+++....     ....
T Consensus        78 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~l~~~~-----~~~~  150 (425)
T 3ka7_A           78 IVRSEMT-TVRVPLKKGNPDYVKGFKDISFNDFPSLLSYKDRMKIALLIVS-TRKNRPSGSSLQAWIKSQV-----SDEW  150 (425)
T ss_dssp             EEECCCC-EEEEESSTTCCSSTTCEEEEEGGGGGGGSCHHHHHHHHHHHHH-TTTSCCCSSBHHHHHHHHC-----CCHH
T ss_pred             EEecCCc-eEEeecCCCcccccccccceehhhhhhhCCHHHHHHHHHHHHh-hhhcCCCCCCHHHHHHHhc-----CCHH
Confidence            4322211 11221 11        22211110000     00011111111 1101112233455554311     1111


Q ss_pred             HHHHHHHHHhh-cc--ccccCC---c---ccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEE
Q 010995          153 LELAIDFILHD-FE--MAEVEP---I---STYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRE  223 (496)
Q Consensus       153 ~~~~~~~~~~~-~~--~~~~~~---~---~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~  223 (496)
                      .+...+.+... +.  ......   .   ......+.   ....++|++.++++|++.+.+      .|++|++|++|++
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~---~~~~~gG~~~l~~~l~~~~~~------~G~~i~~~~~V~~  221 (425)
T 3ka7_A          151 LIKFADSFCGWALSLKSDEVPVEEVFEIIENMYRFGG---TGIPEGGCKGIIDALETVISA------NGGKIHTGQEVSK  221 (425)
T ss_dssp             HHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHHHHCS---CEEETTSHHHHHHHHHHHHHH------TTCEEECSCCEEE
T ss_pred             HHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHhcCC---ccccCCCHHHHHHHHHHHHHH------cCCEEEECCceeE
Confidence            11111111100 00  000000   0   00001111   234578999999999999887      7999999999999


Q ss_pred             EEEcCCceE-EEeCCCcEEEcCEEEEecChHHHhcCCcccCCCC--cHHHHHHHhhCCCcceeEEEEEcCCCCCCCCCCC
Q 010995          224 LQHSRNGVT-VKTEDGCVYEANYVILSASIGVLQSDLISFKPPL--PKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGK  300 (496)
Q Consensus       224 I~~~~~~v~-V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l--~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~~~  300 (496)
                      |..++++++ |++. |++++||+||+|+|+..+.+ ++...+.+  +....+.++.+.+++..++++.|+++++..    
T Consensus       222 i~~~~~~~~gv~~~-g~~~~ad~VV~a~~~~~~~~-ll~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~----  295 (425)
T 3ka7_A          222 ILIENGKAAGIIAD-DRIHDADLVISNLGHAATAV-LCSEALSKEADAAYFKMVGTLQPSAGIKICLAADEPLVGH----  295 (425)
T ss_dssp             EEEETTEEEEEEET-TEEEECSEEEECSCHHHHHH-HTTTTCCTTTTHHHHHHHHHCCCBEEEEEEEEESSCSSCS----
T ss_pred             EEEECCEEEEEEEC-CEEEECCEEEECCCHHHHHH-hcCCcccccCCHHHHHHhhCcCCCceEEEEeecCCCccCc----
Confidence            999988887 7774 77899999999999999987 34333333  677788889999999999999999987643    


Q ss_pred             ceEEeecCCCCc-ccccee-cc--ccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCCCCCCCCeeEeccc
Q 010995          301 EFFIYAHERRGY-YTFWQH-ME--NAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRW  376 (496)
Q Consensus       301 ~~~~~~~~~~~~-~~~~~~-~~--~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~rw  376 (496)
                      ..+.+..+.... ...+.+ .+  ..++|..++.+++.... + ..+. +++.++.++++|++++|..  .+....+++|
T Consensus       296 ~~~~~~~~~~~~~~~~~~s~~~p~~ap~G~~~l~~~~~~~~-~-~~~~-~~~~~~~~~~~l~~~~p~~--~~~~~~v~~~  370 (425)
T 3ka7_A          296 TGVLLTPYTRRINGVNEVTQADPELAPPGKHLTMCHQYVAP-E-NVKN-LESEIEMGLEDLKEIFPGK--RYEVLLIQSY  370 (425)
T ss_dssp             SSEEECCSSSSEEEEECGGGTCGGGSCTTCEEEEEEEEECG-G-GGGG-HHHHHHHHHHHHHHHSTTC--CEEEEEEEEE
T ss_pred             CEEEECCChhhcceEEeccCCCCCcCCCCCeEEEEEecccc-c-cccc-hHHHHHHHHHHHHHhCCCC--ceEEEEEEEE
Confidence            222333222211 111221 11  23456666655544221 1 1112 2455799999999999642  3334478889


Q ss_pred             CCCCCCCcccCCCCCCCChHHHHHHhCCCCcEEEccccccCcCCccchHHHHHHHHHHHHHH
Q 010995          377 WNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVV  438 (496)
Q Consensus       377 ~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il  438 (496)
                      ..      +++.+.+|.  ..++...+|++|||+||||+.+.++.+|++|+.||++||++|+
T Consensus       371 ~~------~~P~~~~~~--~~~~~~~~p~~gL~laG~~~~~~gg~gv~~~~~s~~~~~~~i~  424 (425)
T 3ka7_A          371 HD------EWPVNRAAS--GTDPGNETPFSGLYVVGDGAKGKGGIEVEGVALGVMSVMEKVL  424 (425)
T ss_dssp             BT------TBCSBSSCT--TCCCCSBCSSBTEEECSTTSCCTTCCHHHHHHHHHHHHHHC--
T ss_pred             CC------Ccccccccc--CCCCCCCCCcCCeEEeCCccCCCCCCccHHHHHHHHHHHHHhh
Confidence            65      778778775  2446667888999999999998655699999999999999886

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=100.00  E-value=1e-34  Score=298.99  Aligned_cols=423  Identities=16%  Similarity=0.183  Sum_probs=199.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCcc
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRT   85 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~   85 (496)
                      |++|||||||++||+||++|+++|+ +|+|||+++++||+++|++.+|+.+|.|++++..     ...+.++++.+|...
T Consensus         1 Mk~VvVIGaG~~GL~aA~~La~~G~-~V~VlEa~~~~GG~~~t~~~~G~~~D~G~~~~~~-----~~~~~~l~~~~g~~~   74 (501)
T 4dgk_A            1 MKPTTVIGAGFGGLALAIRLQAAGI-PVLLLEQRDKPGGRAYVYEDQGFTFDAGPTVITD-----PSAIEELFALAGKQL   74 (501)
T ss_dssp             CCCEEEECCHHHHHHHHHHHHHTTC-CEEEECCC-------CEEEETTEEEECSCCCBSC-----THHHHHHHHTTTCCG
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCC-cEEEEccCCCCCCcEEEEEeCCEEEecCceeecC-----chhHHHHHHHhcchh
Confidence            5789999999999999999999999 6999999999999999999999999999998864     234567777777542


Q ss_pred             cc-ccC--CCcceEEEcCCCcccCh----hHHHH-----------HHHHHHHHHHHHhccc----ccc-chhHHHHHHhh
Q 010995           86 CF-SDY--TNARYNIYDRSGKIIPS----GVAAD-----------SYKKAVESAIANLKNL----EAT-NSNIGEVIKAA  142 (496)
Q Consensus        86 ~~-~~~--~~~~~~~~~~~g~~~~~----~~~~~-----------~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~  142 (496)
                      .. .++  .+..+.+...+|..+..    .....           .+.++.+.........    ... .....++....
T Consensus        75 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (501)
T 4dgk_A           75 KEYVELLPVTPFYRLCWESGKVFNYDNDQTRLEAQIQQFNPRDVEGYRQFLDYSRAVFKEGYLKLGTVPFLSFRDMLRAA  154 (501)
T ss_dssp             GGTCCEEEESSSEEEEETTSCEEEECSCHHHHHHHHHHHCTHHHHHHHHHHHHHHHHTSSSCC--CCCCCCCHHHHHHSG
T ss_pred             hhceeeEecCcceEEEcCCCCEEEeeccHHHHHHHHhhcCccccchhhhHHHHHHHhhhhhhhhccccccchhhhhhhhh
Confidence            21 010  11223345566655331    11111           1112222211111110    000 00112221110


Q ss_pred             hcC--------------CCCCCChHHHHHHHHHhhccccc--cCCccccc-ccCCcceeeeCcccHHHHHHHHHHhhccC
Q 010995          143 TEL--------------PSSPKTPLELAIDFILHDFEMAE--VEPISTYV-DFGEREFLVADERGYAHLLYKMAEEFLST  205 (496)
Q Consensus       143 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~G~~~l~~~l~~~~~~~  205 (496)
                      ...              .....+..+..+.+.........  ......+. .........+++||++.|+++|++.+++ 
T Consensus       155 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g~~p~~~~~~~~~~~~~~~~~G~~~p~GG~~~l~~aL~~~~~~-  233 (501)
T 4dgk_A          155 PQLAKLQAWRSVYSKVASYIEDEHLRQAFSFHSLLVGGNPFATSSIYTLIHALEREWGVWFPRGGTGALVQGMIKLFQD-  233 (501)
T ss_dssp             GGTTTSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSCC--CCCTHHHHHHHHSCCCEEEETTHHHHHHHHHHHHHHH-
T ss_pred             hhhhhhhhcccHHHHHHHHhccHHHHhhhhhhhcccCCCcchhhhhhhhhhhhhccCCeEEeCCCCcchHHHHHHHHHH-
Confidence            000              00000011111111110000000  00000000 0001112235689999999999999988 


Q ss_pred             CCCCccccceeeCceeEEEEEcCCceE-EEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcc-ee
Q 010995          206 SDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMV-YT  283 (496)
Q Consensus       206 ~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~-~~  283 (496)
                           .|++|++|++|++|..++++++ |++.+|+++.||+||+++++..+.+.++... +.+....+.++...++. ..
T Consensus       234 -----~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~~~~~~Ll~~~-~~~~~~~~~~~~~~~~~s~~  307 (501)
T 4dgk_A          234 -----LGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVHTYRDLLSQH-PAAVKQSNKLQTKRMSNSLF  307 (501)
T ss_dssp             -----TTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC----------------------------CCEEE
T ss_pred             -----hCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHHHHHHHhcccc-ccchhhhhhhhccccCCcee
Confidence                 7999999999999999999987 9999999999999999999888765444322 23434455566666544 56


Q ss_pred             EEEEEcCCCCCCCCCCCceEEeecCC------------C-Ccccccee----cc--ccCCCCcEEEEEeccccchhcccC
Q 010995          284 KIFLKFPCKFWPCSPGKEFFIYAHER------------R-GYYTFWQH----ME--NAYPGSNILVVTLTNGESKRVEAQ  344 (496)
Q Consensus       284 ~v~l~~~~~~w~~~~~~~~~~~~~~~------------~-~~~~~~~~----~~--~~~~~~~vl~~~~~~~~a~~~~~~  344 (496)
                      ++++.++.+.....  ...+.+..+.            . ....++..    .+  ..++|..++.++...+. ..+...
T Consensus       308 ~~~~~l~~~~~~l~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~dp~~ap~G~~~~~~~~~~p~-~~~~~~  384 (501)
T 4dgk_A          308 VLYFGLNHHHDQLA--HHTVCFGPRYRELIDEIFNHDGLAEDFSLYLHAPCVTDSSLAPEGCGSYYVLAPVPH-LGTANL  384 (501)
T ss_dssp             EEEEEESSCCTTSC--SEEEEEECC-------------CCCEEEEEEECGGGTCGGGSSTTCEEEEEEEEECC-TTTSCC
T ss_pred             EEEecccCCccccc--cceeccccchhhhccccccccccccCCceecccCCCCCCCcCCCCCceEEEEEecCc-cccccc
Confidence            77888877642211  1111111100            0 00011111    11  23455555554433211 112222


Q ss_pred             C----cHHHHHHHHHHHHHhcCCCCCC-CCeeEe---cccCCCCC-CCcccCCCCC--CCChHHHHHH-hCCCCcEEEcc
Q 010995          345 P----DEETLKEAMEVLQDMFGPDIPN-ATDILV---PRWWNNRF-QRGSYSNYPI--ISDNQLVNSI-RAPVAGIFFTG  412 (496)
Q Consensus       345 ~----~ee~~~~~~~~L~~~~~~~~~~-~~~~~~---~rw~~~~~-~~g~~~~~~~--g~~~~~~~~~-~~p~~~l~~aG  412 (496)
                      +    .+++.+++++.|++.+.+...+ ++...+   ..|.+... ..|++....+  .+....+|.. .+|++|||+||
T Consensus       385 ~~~~~~~~~~~~vl~~l~~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~~~RP~~~~t~i~gLyl~G  464 (501)
T 4dgk_A          385 DWTVEGPKLRDRIFAYLEQHYMPGLRSQLVTHRMFTPFDFRDQLNAYHGSAFSVEPVLTQSAWFRPHNRDKTITNLYLVG  464 (501)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTCTTHHHHEEEEEEECTTTTC------------------------------CCTTEEECC
T ss_pred             cHHHHHHHHHHHHHHHHHHhhCCChHHceEEEEECCHHHHHHHcCCCCccccChhcchhhccccCCCCCCCCCCCEEEEC
Confidence            2    3566777888888766332221 111111   12222111 1333221211  1111234433 47899999999


Q ss_pred             ccccCcCCccchHHHHHHHHHHHHHHHHHhcccc
Q 010995          413 EHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNE  446 (496)
Q Consensus       413 d~~~~~~~g~~egA~~SG~~aA~~il~~l~~~~~  446 (496)
                      ++++++  ++++||+.||..||++|+++|.++.+
T Consensus       465 ~~t~pG--~Gv~ga~~SG~~aA~~il~dL~gG~~  496 (501)
T 4dgk_A          465 AGTHPG--AGIPGVIGSAKATAGLMLEDLIGGSH  496 (501)
T ss_dssp             CH--------HHHHHHHHHHHHHHHHHHHC----
T ss_pred             CCCCCc--ccHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            999763  57999999999999999999987765

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=100.00  E-value=4e-33  Score=280.60  Aligned_cols=382  Identities=16%  Similarity=0.176  Sum_probs=230.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCccc
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTC   86 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~~   86 (496)
                      .||+|||||++||+||++|+++|+ +|+|||+++++||++.+...+|+.+|.|++++...  .....+.++++++|+...
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~-~V~vlE~~~~~GG~~~~~~~~g~~~d~G~~~~~~~--~~~~~~~~l~~~lg~~~~   77 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGH-EIIVLEKSAMIGGRFTNLPYKGFQLSTGALHMIPH--GEDGPLAHLLRILGAKVE   77 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSSSCTTSSEEEETTEEEESSSCSEETT--TTSSHHHHHHHHHTCCCC
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCCCceeEEeccCCEEEecCCeEEEcc--CCChHHHHHHHHhCCcce
Confidence            389999999999999999999999 79999999999999999999999999998766541  145688999999998755


Q ss_pred             cccCCCcceEEEcCCCcccChhHHHHHH-----HHHHHHHHHHhc-cccccchhHHHHHHhhhcCCCCCCChHHHHHHHH
Q 010995           87 FSDYTNARYNIYDRSGKIIPSGVAADSY-----KKAVESAIANLK-NLEATNSNIGEVIKAATELPSSPKTPLELAIDFI  160 (496)
Q Consensus        87 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (496)
                      ....... ..++ .+|..++.......+     ..+......... ..+....++.+++...    .......+...+.+
T Consensus        78 ~~~~~~~-~~~~-~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~----g~~~~~~~~~~~~~  151 (421)
T 3nrn_A           78 IVNSNPK-GKIL-WEGKIFHYRESWKFLSVKEKAKALKLLAEIRMNKLPKEEIPADEWIKEK----IGENEFLLSVLESF  151 (421)
T ss_dssp             EEECSSS-CEEE-ETTEEEEGGGGGGGCC--------CCHHHHHTTCCCCCCSBHHHHHHHH----TCCCHHHHHHHHHH
T ss_pred             EEECCCC-eEEE-ECCEEEEcCCchhhCCHhHHHHHHHHHHHHHhccCCCCCCCHHHHHHHh----cCCcHHHHHHHHHH
Confidence            4333222 2222 255443211100000     000000000000 1111112344444431    00111111111111


Q ss_pred             Hhh-ccc--cccCC--c----ccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCce
Q 010995          161 LHD-FEM--AEVEP--I----STYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGV  231 (496)
Q Consensus       161 ~~~-~~~--~~~~~--~----~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v  231 (496)
                      ... +..  .....  .    ......++   ...+++|++.++++|++.+.+      .|++|++|++|++|..++++|
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~gG~~~l~~~l~~~~~~------~G~~i~~~~~V~~i~~~~~~v  222 (421)
T 3nrn_A          152 AGWADSVSLSDLTALELAKEIRAALRWGG---PGLIRGGCKAVIDELERIIME------NKGKILTRKEVVEINIEEKKV  222 (421)
T ss_dssp             HHHHHSSCGGGSBHHHHHHHHHHHHHHCS---CEEETTCHHHHHHHHHHHHHT------TTCEEESSCCEEEEETTTTEE
T ss_pred             HHHhcCCCcccCCHHHHHHHHHHHhhcCC---cceecCCHHHHHHHHHHHHHH------CCCEEEcCCeEEEEEEECCEE
Confidence            100 000  00000  0    00001111   234589999999999999887      799999999999999988888


Q ss_pred             EEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCCCCceEEeecCCCC
Q 010995          232 TVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRG  311 (496)
Q Consensus       232 ~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~~~~~~~~~~~~~~  311 (496)
                       |. .+|++++||+||+|+|+..+.+ ++. .+.+++...+.++++.+.+..++++.++++....   ..+ .+..+.. 
T Consensus       223 -V~-~~g~~~~ad~Vv~a~~~~~~~~-ll~-~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~---~~~-~~~~~~~-  293 (421)
T 3nrn_A          223 -YT-RDNEEYSFDVAISNVGVRETVK-LIG-RDYFDRDYLKQVDSIEPSEGIKFNLAVPGEPRIG---NTI-VFTPGLM-  293 (421)
T ss_dssp             -EE-TTCCEEECSEEEECSCHHHHHH-HHC-GGGSCHHHHHHHHTCCCCCEEEEEEEEESSCSSC---SSE-EECTTSS-
T ss_pred             -EE-eCCcEEEeCEEEECCCHHHHHH-hcC-cccCCHHHHHHHhCCCCCceEEEEEEEcCCcccC---CeE-EEcCCcc-
Confidence             74 4677999999999999999987 332 2346777778889999999999999999875332   233 3332221 


Q ss_pred             cccc-ce-ecc--ccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCCCCCCCCeeEecccCCCCCCCcccC
Q 010995          312 YYTF-WQ-HME--NAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYS  387 (496)
Q Consensus       312 ~~~~-~~-~~~--~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~rw~~~~~~~g~~~  387 (496)
                      +..+ +. ..+  ..++|..++.++....      ..++++.++.++++|.+++|    ......+++|..      +++
T Consensus       294 ~~~i~~~s~~~p~~ap~G~~~~~~~~~~~------~~~~~~~~~~~~~~L~~~~p----~~~~~~~~~~~~------~~p  357 (421)
T 3nrn_A          294 INGFNEPSALDKSLAREGYTLIMAHMALK------NGNVKKAIEKGWEELLEIFP----EGEPLLAQVYRD------GNP  357 (421)
T ss_dssp             SCEEECGGGTCGGGSCTTEEEEEEEEECT------TCCHHHHHHHHHHHHHHHCT----TCEEEEEEEC-----------
T ss_pred             eeeEeccCCCCCCcCCCCceEEEEEEeec------cccHHHHHHHHHHHHHHHcC----CCeEEEeeeccC------CCC
Confidence            1111 11 111  1234455555544321      12334668999999999997    223345677854      444


Q ss_pred             CCC--CCCChHHHHHHhCCCCcEEEccccccCcCCccchHHHHHHHHHHHHH
Q 010995          388 NYP--IISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAV  437 (496)
Q Consensus       388 ~~~--~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~i  437 (496)
                      .+.  ++..   . . .+| +|||+||||+.+.+.-.||||+.||.+||++|
T Consensus       358 ~~~~~~~~~---~-~-~~~-~gl~laGd~~~~~~g~~~~ga~~sg~~aA~~l  403 (421)
T 3nrn_A          358 VNRTRAGLH---I-E-WPL-NEVLVVGDGYRPPGGIEVDGIALGVMKALEKL  403 (421)
T ss_dssp             --------C---C-C-CCC-SSEEECSTTCCCTTCCHHHHHHHHHHHHHHHT
T ss_pred             cccccCCCC---C-C-CCC-CcEEEECCcccCCCceeeehHHHHHHHHHHHh
Confidence            432  2221   1 1 567 99999999998732225699999999999998

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=100.00  E-value=3.5e-32  Score=277.25  Aligned_cols=407  Identities=14%  Similarity=0.111  Sum_probs=246.5

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCC-CCcEEEEeeCCCCCeEEEee-eeCCcEEeecceEEecCCCCCCChHHHHH
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENG-IEDILILEASDRIGGRVRNE-KFGGVSVELGAGWIAGVGGKESNPVWELA   78 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G-~~~V~vlEa~~~~GGr~~t~-~~~g~~~d~G~~~~~~~~~~~~~~~~~l~   78 (496)
                      |...+++||+|||||++||+||++|+++| . +|+|+|+++++||++++. ..+|+.+|.|++++..    .++.+.+++
T Consensus         4 m~~~~~~~v~iiG~G~~Gl~~A~~l~~~g~~-~v~v~E~~~~~GG~~~~~~~~~g~~~~~g~~~~~~----~~~~~~~l~   78 (484)
T 4dsg_A            4 MAELLTPKIVIIGAGPTGLGAAVRLTELGYK-NWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIFS----HYQYFDDVM   78 (484)
T ss_dssp             ---CCSCCEEEECCSHHHHHHHHHHHHTTCC-SEEEEESSSSSSGGGCEEECTTSCEEESSCCCBCC----SBHHHHHHH
T ss_pred             CCcccCCCEEEECcCHHHHHHHHHHHHcCCC-CEEEEeCCCCCCCeeeeeecCCCcEEeeCCccccc----ChHHHHHHH
Confidence            33446789999999999999999999998 7 699999999999999995 6789999999999977    777889999


Q ss_pred             HhcCCccccccCCCcceEEEcCCCcccChh-------HHHHHHHHHHHHHHHH-hccccccchhHHHHHHhhhcCCCCCC
Q 010995           79 SKSGLRTCFSDYTNARYNIYDRSGKIIPSG-------VAADSYKKAVESAIAN-LKNLEATNSNIGEVIKAATELPSSPK  150 (496)
Q Consensus        79 ~~lgl~~~~~~~~~~~~~~~~~~g~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (496)
                      +++. .... ......+  ...+|+.++.+       ............+... .........++.+|+...........
T Consensus        79 ~~~~-~~~~-~~~~~~~--~~~~g~~~~~P~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~~s~~e~~~~~~g~~~~~~  154 (484)
T 4dsg_A           79 DWAV-QGWN-VLQRESW--VWVRGRWVPYPFQNNIHRLPEQDRKRCLDELVRSHARTYTEPPNNFEESFTRQFGEGIADI  154 (484)
T ss_dssp             HHHC-SCEE-EEECCCE--EEETTEEEESSGGGCGGGSCHHHHHHHHHHHHHHHHCCCSSCCSSHHHHHHHHHHHHHCCC
T ss_pred             HHHh-hhhh-hccCceE--EEECCEEEEeCccchhhhCCHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHhHHHHHHH
Confidence            9874 3221 2222112  22355543321       0001111111111111 11111122234444432110000000


Q ss_pred             ChHHHHHHHHHhhccccccC------Cc-------cc-cc-----ccCCcc-eeeeCcccHHHHHHHHHHhhccCCCCCc
Q 010995          151 TPLELAIDFILHDFEMAEVE------PI-------ST-YV-----DFGERE-FLVADERGYAHLLYKMAEEFLSTSDGKI  210 (496)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~------~~-------~~-~~-----~~~~~~-~~~~~~~G~~~l~~~l~~~~~~~~~~~~  210 (496)
                      -........+..+....+..      +.       .. +.     ..+... +.+..++|++.++++|++.+.+      
T Consensus       155 ~~~p~~~~v~~~~~~~ls~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~f~yp~~gG~~~l~~~la~~l~~------  228 (484)
T 4dsg_A          155 FMRPYNFKVWAVPPCLMSTEWVEERVAPVDLERIRRNIQENRDDLGWGPNATFRFPQRGGTGIIYQAIKEKLPS------  228 (484)
T ss_dssp             CCHHHHHHHHSSCGGGBCSSSCTTTSCCCCHHHHHHHHHHTCCCCCCSTTSEEEEESSSCTHHHHHHHHHHSCG------
T ss_pred             HHHHHHhhhcCCCHHHhcHHHHhccccCCCHHHHHHHHhhcccccCCCccceEEeecCCCHHHHHHHHHhhhhh------
Confidence            00001111111110000000      00       00 00     001111 2223468999999999998642      


Q ss_pred             cccceeeC--ceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEE
Q 010995          211 LDNRLKLN--KVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLK  288 (496)
Q Consensus       211 ~g~~i~~~--~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~  288 (496)
                        .+|+++  ++|++|+.++++|+  +.+|+++.||+||+|+|+..+.+.+-...+++++...+.+..++|.+..+|++.
T Consensus       229 --~~i~~~~~~~V~~I~~~~~~v~--~~~G~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~l~~l~y~s~~~v~l~  304 (484)
T 4dsg_A          229 --EKLTFNSGFQAIAIDADAKTIT--FSNGEVVSYDYLISTVPFDNLLRMTKGTGFKGYDEWPAIADKMVYSSTNVIGIG  304 (484)
T ss_dssp             --GGEEECGGGCEEEEETTTTEEE--ETTSCEEECSEEEECSCHHHHHHHEECSSCTTGGGHHHHHHHCCEEEEEEEEEE
T ss_pred             --CeEEECCCceeEEEEecCCEEE--ECCCCEEECCEEEECCCHHHHHHHhhccCCCCCHHHHHHHhCCCcCceEEEEEE
Confidence              279999  56999998888654  477888999999999999999873211234577778889999999999999999


Q ss_pred             cCCCCCCC-CCCCceEEeecCCCC--ccccceeccc--cCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCC
Q 010995          289 FPCKFWPC-SPGKEFFIYAHERRG--YYTFWQHMEN--AYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGP  363 (496)
Q Consensus       289 ~~~~~w~~-~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~  363 (496)
                      |+.+...+ .+++.+++ .+....  ..+++.+..+  .+++..+++..+...   ....++|+++++.++++|.++.+.
T Consensus       305 ~~~~~~~~~~~~~~i~v-p~~~~~~~ri~~~s~~~p~~ap~g~~~l~~e~~~~---~~~~~~d~~l~~~a~~~L~~~~~~  380 (484)
T 4dsg_A          305 VKGTPPPHLKTACWLYF-PEDTSPFYRATVFSNYSKYNVPEGHWSLMLEVSES---KYKPVNHSTLIEDCIVGCLASNLL  380 (484)
T ss_dssp             EESCCCGGGTTCCEEEC-CSTTCSCSEEECGGGTCGGGSCTTEEEEEEEEEEB---TTBCCCTTSHHHHHHHHHHHTTSC
T ss_pred             EcCCCcccCCCCeEEEE-EcCCCeEEEEEeecCCCcccCCCCeEEEEEEEecC---cCCcCCHHHHHHHHHHHHHHcCCC
Confidence            98863211 11223332 222221  1222333221  234445666555422   344679999999999999998755


Q ss_pred             CCCCC-CeeEecccCCCCCCCcccCCCCCCCChH---HHHHHhCCCCcEEEccccccCcCC-ccchHHHHHHHHHHHHHH
Q 010995          364 DIPNA-TDILVPRWWNNRFQRGSYSNYPIISDNQ---LVNSIRAPVAGIFFTGEHTSERFN-GYVHGGYLAGIDTGKAVV  438 (496)
Q Consensus       364 ~~~~~-~~~~~~rw~~~~~~~g~~~~~~~g~~~~---~~~~~~~p~~~l~~aGd~~~~~~~-g~~egA~~SG~~aA~~il  438 (496)
                      ...++ ....++||..      +|+.+.+|+...   .+..+.+ . ||+++|.+....|. ..|+.|+.||++||++|+
T Consensus       381 ~~~~~~~~~~v~r~~~------~yP~y~~~~~~~~~~~~~~l~~-~-~l~~~Gr~g~~~y~v~~~d~~i~sg~~aa~~i~  452 (484)
T 4dsg_A          381 LPEDLLVSKWHYRIEK------GYPTPFIGRNNLLEKAQPELMS-R-CIYSRGRFGAWRYEVGNQDHSFMQGVEAIDHVL  452 (484)
T ss_dssp             CTTCCEEEEEEEEEEE------EEECCBTTHHHHHHHHHHHHHH-T-TEEECSTTTTCCGGGCSHHHHHHHHHHHHHHHT
T ss_pred             CccceEEEEEEEEeCc------cccCCCccHHHHHHHHHHHHHh-C-CcEeecCCcccccCCCChHHHHHHHHHHHHHHH
Confidence            43333 3456889966      899999997422   3333443 3 99999997765332 469999999999999997

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=100.00  E-value=1.4e-31  Score=269.58  Aligned_cols=387  Identities=17%  Similarity=0.197  Sum_probs=227.4

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCC-CCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHH
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENG-IEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELAS   79 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G-~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~   79 (496)
                      |+..+++||+|||||++||+||++|+++| + +|+|||+++++||+++|.+.+|+.+|.|++++..    .+..+.++++
T Consensus         1 M~~~~~~~v~IIGaG~aGl~aA~~L~~~g~~-~v~v~E~~~~~GG~~~t~~~~G~~~d~G~~~~~~----~~~~~~~l~~   75 (424)
T 2b9w_A            1 MSISKDSRIAIIGAGPAGLAAGMYLEQAGFH-DYTILERTDHVGGKCHSPNYHGRRYEMGAIMGVP----SYDTIQEIMD   75 (424)
T ss_dssp             -CCCTTCCEEEECCSHHHHHHHHHHHHTTCC-CEEEECSSSCSSTTCCCCEETTEECCSSCCCBCT----TCHHHHHHHH
T ss_pred             CCCCCCCCEEEECcCHHHHHHHHHHHhCCCC-cEEEEECCCCCCCcccccCCCCcccccCceeecC----CcHHHHHHHH
Confidence            66567889999999999999999999999 8 6999999999999999999999999999999876    7788999999


Q ss_pred             hcCCccccccCCCcceEEEcCCCcccC-hh--H----HHHHHHHHHHHHHHHhccc----------cccchhHHHHHHhh
Q 010995           80 KSGLRTCFSDYTNARYNIYDRSGKIIP-SG--V----AADSYKKAVESAIANLKNL----------EATNSNIGEVIKAA  142 (496)
Q Consensus        80 ~lgl~~~~~~~~~~~~~~~~~~g~~~~-~~--~----~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~  142 (496)
                      ++|++.....   ....++..+|.... ..  .    ....+..+...........          .....++.+++...
T Consensus        76 ~~g~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~  152 (424)
T 2b9w_A           76 RTGDKVDGPK---LRREFLHEDGEIYVPEKDPVRGPQVMAAVQKLGQLLATKYQGYDANGHYNKVHEDLMLPFDEFLALN  152 (424)
T ss_dssp             HHCCCCCSCC---CCEEEECTTSCEECGGGCTTHHHHHHHHHHHHHHHHHTTTTTTTSSSSSSCCCGGGGSBHHHHHHHT
T ss_pred             HhCCcccccc---ccceeEcCCCCEeccccCcccchhHHHHHHHHHHHHhhhhhhcccccchhhhhhhhccCHHHHHHhh
Confidence            9998754321   11234455665432 11  0    0111111111111111100          01122455555531


Q ss_pred             hcCCCCCCChHHHHHHHHHhhcc---ccccCCcc--c---c------cccCCcceeeeCcccHHHHHHHHHHhhccCCCC
Q 010995          143 TELPSSPKTPLELAIDFILHDFE---MAEVEPIS--T---Y------VDFGEREFLVADERGYAHLLYKMAEEFLSTSDG  208 (496)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~---~------~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~  208 (496)
                      .    .. ..    .+.+...+-   ........  .   +      ..+... ......+|++.++++|.+.       
T Consensus       153 ~----~~-~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~l~~~l~~~-------  215 (424)
T 2b9w_A          153 G----CE-AA----RDLWINPFTAFGYGHFDNVPAAYVLKYLDFVTMMSFAKG-DLWTWADGTQAMFEHLNAT-------  215 (424)
T ss_dssp             T----CG-GG----HHHHTTTTCCCCCCCTTTSBHHHHHHHSCHHHHHHHHHT-CCBCCTTCHHHHHHHHHHH-------
T ss_pred             C----cH-HH----HHHHHHHHHhhccCChHhcCHHHHHHhhhHhhhhcccCC-ceEEeCChHHHHHHHHHHh-------
Confidence            0    00 00    111110000   00000000  0   0      000001 1224578999999999988       


Q ss_pred             CccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEE
Q 010995          209 KILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLK  288 (496)
Q Consensus       209 ~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~  288 (496)
                        .+.+|++|++|++|..++++|+|++.+| +++||+||+|+|+..+.+    +.|++++. ++.+.++.+.++. +.+.
T Consensus       216 --l~~~v~~~~~V~~i~~~~~~v~v~~~~g-~~~ad~Vv~a~~~~~~~~----~l~~~~~~-~~~~~~~~~~~~~-~~~~  286 (424)
T 2b9w_A          216 --LEHPAERNVDITRITREDGKVHIHTTDW-DRESDVLVLTVPLEKFLD----YSDADDDE-REYFSKIIHQQYM-VDAC  286 (424)
T ss_dssp             --SSSCCBCSCCEEEEECCTTCEEEEESSC-EEEESEEEECSCHHHHTT----SBCCCHHH-HHHHTTCEEEEEE-EEEE
T ss_pred             --hcceEEcCCEEEEEEEECCEEEEEECCC-eEEcCEEEECCCHHHHhh----ccCCCHHH-HHHHhcCCcceeE-EEEE
Confidence              4568999999999999888899999888 589999999999998865    23445443 3455666665532 2222


Q ss_pred             cCCCCCCCCCCCceEEeecC---CCCccccceeccccCCC-CcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCCC
Q 010995          289 FPCKFWPCSPGKEFFIYAHE---RRGYYTFWQHMENAYPG-SNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPD  364 (496)
Q Consensus       289 ~~~~~w~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~  364 (496)
                      +...++ .   ...+...+.   ..+ +.+|... ..+.+ ..+++++..+ ....+...+++++++.++++|.+ ++.+
T Consensus       287 ~~~~~~-~---~~~~~~~~~~~~~~g-~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~v~~~l~~-l~~~  358 (424)
T 2b9w_A          287 LVKEYP-T---ISGYVPDNMRPERLG-HVMVYYH-RWADDPHQIITTYLLR-NHPDYADKTQEECRQMVLDDMET-FGHP  358 (424)
T ss_dssp             EESSCC-S---SEEECGGGGSGGGTT-SCCEEEE-CCTTCTTSCEEEEEEC-CBTTBCCCCHHHHHHHHHHHHHH-TTCC
T ss_pred             EeccCC-c---ccccccCCCCCcCCC-cceEEee-ecCCCCceEEEEEecc-CCCcccccChHHHHHHHHHHHHH-cCCc
Confidence            222221 1   112221111   111 1222211 11122 3456665554 34567778899999999999998 5543


Q ss_pred             CCCCCeeEecccCCCCCCCcccCCCCCCCChHHHHHHhCCCCcEEEccccccCcCCccchHHHHHHHHHHHHHH
Q 010995          365 IPNATDILVPRWWNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVV  438 (496)
Q Consensus       365 ~~~~~~~~~~rw~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il  438 (496)
                      .+++.  ....|...|..  +-..+..|.  .......++.+||||||+|+..   |++|+|+.||++||++|+
T Consensus       359 ~~~~~--~~~~w~~~p~~--~~~~~~~G~--~~~~~~~~~~~~l~~aG~~~~~---g~~e~a~~Sg~~aA~~~l  423 (424)
T 2b9w_A          359 VEKII--EEQTWYYFPHV--SSEDYKAGW--YEKVEGMQGRRNTFYAGEIMSF---GNFDEVCHYSKDLVTRFF  423 (424)
T ss_dssp             EEEEE--EEEEEEEEEEC--CHHHHHTTH--HHHHHHTTTGGGEEECSGGGSC---SSHHHHHHHHHHHHHHHT
T ss_pred             ccccc--cccceeeeecc--CHHHHhccH--HHHHHHHhCCCCceEecccccc---ccHHHHHHHHHHHHHHhc
Confidence            22222  23456431110  000112222  1122233456799999999864   789999999999999875

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=99.93  E-value=5.8e-26  Score=225.82  Aligned_cols=345  Identities=14%  Similarity=0.164  Sum_probs=192.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-CCCcEEEEeeCCCCCeEEEeeee--CCcEEe-ecceEEecCCCCCCChHHHHHHh
Q 010995            5 SRSPVIIIGAGVSGISAGKILAEN-GIEDILILEASDRIGGRVRNEKF--GGVSVE-LGAGWIAGVGGKESNPVWELASK   80 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~-G~~~V~vlEa~~~~GGr~~t~~~--~g~~~d-~G~~~~~~~~~~~~~~~~~l~~~   80 (496)
                      .++||+|||||++||+||+.|+++ |+ +|+|||+++++||+++|...  +|..+| .|+++++.    .++.+++++++
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~-~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~----~~~~~~~~~~~   80 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVATQLDK-RVLVLERRPHIGGNAYSEAEPQTGIEVHKYGAHLFHT----SNKRVWDYVRQ   80 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHHSCC-CEEEECSSSSSSGGGCEEECTTTCCEEETTSCCCEEE----SCHHHHHHHTT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHhCCC-CEEEEeCCCCCCCeeeeccccCCCEEEEeCCCcEEcC----CcHHHHHHHHH
Confidence            368999999999999999999999 99 69999999999999999887  688885 99999998    78899999999


Q ss_pred             cCCccccccCCCcceEEEcCCCcccC--hhH--HHHHHH-----HHHH-HHHHHhcccc-ccchhHHHHHHhhhcCCCCC
Q 010995           81 SGLRTCFSDYTNARYNIYDRSGKIIP--SGV--AADSYK-----KAVE-SAIANLKNLE-ATNSNIGEVIKAATELPSSP  149 (496)
Q Consensus        81 lgl~~~~~~~~~~~~~~~~~~g~~~~--~~~--~~~~~~-----~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  149 (496)
                      +|+..   .+....  .+..+|+.++  ...  ...++.     .... .+........ ....++.+++....     .
T Consensus        81 ~g~~~---~~~~~~--~~~~~G~~~~~p~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~e~l~~~~-----g  150 (399)
T 1v0j_A           81 FTDFT---DYRHRV--FAMHNGQAYQFPMGLGLVSQFFGKYFTPEQARQLIAEQAAEIDTADAQNLEEKAISLI-----G  150 (399)
T ss_dssp             TCCBC---CCCCCE--EEEETTEEEEESSSHHHHHHHHTSCCCHHHHHHHHHHHGGGSCTTC----CCHHHHHH-----C
T ss_pred             hhhhh---ccccce--EEEECCEEEeCCCCHHHHHHHhcccCCHHHHHHHHHHHhhccCCCCcccHHHHHHHHH-----h
Confidence            99732   222222  2334666543  211  111111     0011 1111111110 01112222222100     0


Q ss_pred             CChHHHHHHHHH-hhccc--cccC--Ccccc---cc----cCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceee
Q 010995          150 KTPLELAIDFIL-HDFEM--AEVE--PISTY---VD----FGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKL  217 (496)
Q Consensus       150 ~~~~~~~~~~~~-~~~~~--~~~~--~~~~~---~~----~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~  217 (496)
                      ....+..+..+. ..+..  .++.  ....+   ..    +....+...+++|++.++++|++.         .|++|++
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~l~~~---------~g~~I~l  221 (399)
T 1v0j_A          151 RPLYEAFVKGYTAKQWQTDPKELPAANITRLPVRYTFDNRYFSDTYEGLPTDGYTAWLQNMAAD---------HRIEVRL  221 (399)
T ss_dssp             HHHHHHHTHHHHHHHHTSCGGGSCGGGCSCCCCCSSSCCCSCCCSEEECBTTHHHHHHHHHTCS---------TTEEEEC
T ss_pred             HHHHHHHHHHHHHhhcCCChhhcChHhhhcceeEeccccchhhhhhcccccccHHHHHHHHHhc---------CCeEEEE
Confidence            000111111111 11100  0111  00000   00    111112226689999999999885         6789999


Q ss_pred             CceeEEEEEcCCceEEEeCCCcEE-EcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCC
Q 010995          218 NKVVRELQHSRNGVTVKTEDGCVY-EANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPC  296 (496)
Q Consensus       218 ~~~V~~I~~~~~~v~V~~~~G~~~-~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~  296 (496)
                      |++|++|..+   |     +  ++ .||+||+|+|+..+.+  +            .+..++|.+...+.+.++.+.+..
T Consensus       222 ~~~V~~I~~~---v-----~--~~~~aD~VI~t~p~~~l~~--~------------~l~~l~y~s~~~~~~~~~~~~~~~  277 (399)
T 1v0j_A          222 NTDWFDVRGQ---L-----R--PGSPAAPVVYTGPLDRYFD--Y------------AEGRLGWRTLDFEVEVLPIGDFQG  277 (399)
T ss_dssp             SCCHHHHHHH---H-----T--TTSTTCCEEECSCHHHHTT--T------------TTCCCCEEEEEEEEEEESSSCSSS
T ss_pred             CCchhhhhhh---h-----h--hcccCCEEEECCcHHHHHh--h------------hhCCCCcceEEEEEEEEccccCCC
Confidence            9999999643   2     1  34 6999999999999876  2            134678888788888887654322


Q ss_pred             CCCCceEEeecCCCCcc--ccceeccc-c--CCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCCCCCCCCee
Q 010995          297 SPGKEFFIYAHERRGYY--TFWQHMEN-A--YPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDI  371 (496)
Q Consensus       297 ~~~~~~~~~~~~~~~~~--~~~~~~~~-~--~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~  371 (496)
                         ..++.+.+......  +.+.++.. .  +++..++...+.                                     
T Consensus       278 ---~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~v~~e~~-------------------------------------  317 (399)
T 1v0j_A          278 ---TAVMNYNDLDVPYTRIHEFRHFHPERDYPTDKTVIMREYS-------------------------------------  317 (399)
T ss_dssp             ---SSEEEECCTTSSCSEEEEGGGGCTTSCCCSSCEEEEEEEE-------------------------------------
T ss_pred             ---CeEEEeCCCCCCcceeEeecCCCCCCcCCCCCeEEEEeec-------------------------------------
Confidence               22333332211111  11111211 1  112222222221                                     


Q ss_pred             EecccCCCCCCCcccCCCCCCCChH--HHHHHhCCC---CcEEEccccccCcCCccchHHHHHHHHHHHHHHHHHh
Q 010995          372 LVPRWWNNRFQRGSYSNYPIISDNQ--LVNSIRAPV---AGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIR  442 (496)
Q Consensus       372 ~~~rw~~~~~~~g~~~~~~~g~~~~--~~~~~~~p~---~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~  442 (496)
                        ..|..  .....|+.+.+++...  ....+..+.   +||+|||++.+.. +++||+++.||++||++|.+...
T Consensus       318 --~~~~~--~~~~~ypv~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~-~~~~e~~i~sa~~~a~~l~~~~~  388 (399)
T 1v0j_A          318 --RFAED--DDEPYYPINTEADRALLATYRARAKSETASSKVLFGGRLGTYQ-YLDMHMAIASALNMYDNVLAPHL  388 (399)
T ss_dssp             --EECCT--TSCCCEECCCHHHHHHHHHHHHHHHHHHHHHCEEECHHHHHTC-CCCHHHHHHHHHHHHHHTHHHHH
T ss_pred             --ccccC--CCccccccCcHHHHHHHHHHHHHHHhccccCCEEEccceEEEE-ecCHHHHHHHHHHHHHHHhhhhh
Confidence              11321  0111244444443211  233333334   7999999997663 47899999999999999986544

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=99.89  E-value=3.9e-22  Score=196.95  Aligned_cols=339  Identities=15%  Similarity=0.195  Sum_probs=191.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeee--CCcEE-eecceEEecCCCCCCChHHHHHHhcC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKF--GGVSV-ELGAGWIAGVGGKESNPVWELASKSG   82 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~--~g~~~-d~G~~~~~~~~~~~~~~~~~l~~~lg   82 (496)
                      +.||+|||||++||+||+.|+++|+ +|+|+|+++++||+++|...  .|..+ |.|+++++.    .++.+++++++++
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~-~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~----~~~~~~~~~~~l~   77 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHT----DNETVWNYVNKHA   77 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEE----SCHHHHHHHHTTS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC-cEEEEEecCCcCCccccccccCCCceEeeCCceEECC----CCHHHHHHHHHHh
Confidence            4799999999999999999999999 79999999999999999887  68876 899999998    7889999999998


Q ss_pred             CccccccCCCcceEEEcCCCccc--ChhH--HHHHHH------HHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCCh
Q 010995           83 LRTCFSDYTNARYNIYDRSGKII--PSGV--AADSYK------KAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTP  152 (496)
Q Consensus        83 l~~~~~~~~~~~~~~~~~~g~~~--~~~~--~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (496)
                      ...   ++....  ....+|..+  |...  ...++.      ..................++.++.....     ....
T Consensus        78 ~~~---~~~~~~--~~~~~g~~~~~P~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~sl~e~~~~~~-----g~~~  147 (384)
T 2bi7_A           78 EMM---PYVNRV--KATVNGQVFSLPINLHTINQFFSKTCSPDEARALIAEKGDSTIADPQTFEEEALRFI-----GKEL  147 (384)
T ss_dssp             CEE---ECCCCE--EEEETTEEEEESCCHHHHHHHTTCCCCHHHHHHHHHHHSCCSCSSCCBHHHHHHHHH-----CHHH
T ss_pred             hhc---ccccce--EEEECCEEEECCCChhHHHHHhcccCCHHHHHHHHHHhhhccCCCCcCHHHHHHHhh-----cHHH
Confidence            632   222221  222355432  3221  111110      0111111111111112223444443311     0001


Q ss_pred             HHHHHHHH-Hhhccc--cccC--Cc------cccc-ccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCce
Q 010995          153 LELAIDFI-LHDFEM--AEVE--PI------STYV-DFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKV  220 (496)
Q Consensus       153 ~~~~~~~~-~~~~~~--~~~~--~~------~~~~-~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~  220 (496)
                      .+..+..+ ...+..  .++.  ..      ..+. .+....+...+++|++.++++|++.         .|++|++|++
T Consensus       148 ~~~~~~p~~~~~~~~~~~~ls~~~~~r~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~l~~~---------~g~~I~l~~~  218 (384)
T 2bi7_A          148 YEAFFKGYTIKQWGMQPSELPASILKRLPVRFNYDDNYFNHKFQGMPKCGYTQMIKSILNH---------ENIKVDLQRE  218 (384)
T ss_dssp             HHHHTHHHHHHHHSSCGGGSBGGGCCSCCCCSSSCCCSCCCSEEEEETTHHHHHHHHHHCS---------TTEEEEESCC
T ss_pred             HHHHHHHHHHHHhCCCHHHhCHHHHhccccccccccccccccccEEECcCHHHHHHHHHhc---------CCCEEEECCe
Confidence            11111111 111110  0000  00      0000 0111122236689999999999885         6789999999


Q ss_pred             eE-EEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCCC
Q 010995          221 VR-ELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPG  299 (496)
Q Consensus       221 V~-~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~~  299 (496)
                      |+ +|..               .||+||+|+|+..+.+.              .+..++|.+...+.+.++ +...   +
T Consensus       219 V~~~i~~---------------~~d~VI~a~p~~~~~~~--------------~lg~l~y~s~~~v~~~~d-~~~~---~  265 (384)
T 2bi7_A          219 FIVEERT---------------HYDHVFYSGPLDAFYGY--------------QYGRLGYRTLDFKKFTYQ-GDYQ---G  265 (384)
T ss_dssp             CCGGGGG---------------GSSEEEECSCHHHHTTT--------------TTCCCCEEEEEEEEEEEE-SCSS---S
T ss_pred             eehhhhc---------------cCCEEEEcCCHHHHHHh--------------hcCCCCcceEEEEEEEeC-CCCC---C
Confidence            99 7752               29999999999998762              124578888887888886 2211   2


Q ss_pred             CceEEeecCCCCcccc--ceecc-ccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCCCCCCCCeeEeccc
Q 010995          300 KEFFIYAHERRGYYTF--WQHME-NAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRW  376 (496)
Q Consensus       300 ~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~rw  376 (496)
                      ..++.+.+.+..+..+  +.++. ...++.+++...+..                                       .|
T Consensus       266 ~~~~n~~~~~~~~~ri~~~~~~~~~~~~~~~~v~~e~~~---------------------------------------~~  306 (384)
T 2bi7_A          266 CAVMNYCSVDVPYTRITEHKYFSPWEQHDGSVCYKEYSR---------------------------------------AC  306 (384)
T ss_dssp             SSEEEECSTTSSSSEEEEGGGGCTTSCCSEEEEEEEEEE---------------------------------------EC
T ss_pred             CEEEEecCCCCCeeeEEEeeccCCCCCCCCEEEEEEEec---------------------------------------cc
Confidence            2333343222111111  11111 111222332222211                                       23


Q ss_pred             C-C-CCCCCcccCCCCCCCCh--HHHHHHhCCCCcEEEccccccCcCCccchHHHHHHHHHHHHHHHHHhccc
Q 010995          377 W-N-NRFQRGSYSNYPIISDN--QLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDN  445 (496)
Q Consensus       377 ~-~-~~~~~g~~~~~~~g~~~--~~~~~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~~~~  445 (496)
                      . . .|    .|+.+..++..  +....+....+||+|||.+...+ ++.||.++.||+++|++++..+....
T Consensus       307 ~~~~~p----~ypv~~~~~~~~~~~~~~~~~~~~~~~~~Gr~~~~~-~~~~~d~i~sa~~~a~~~~~~~~~~~  374 (384)
T 2bi7_A          307 EENDIP----YYPIRQMGEMALLEKYLSLAENETNITFVGRLGTYR-YLDMDVTIAEALKTAEVYLNSLTENQ  374 (384)
T ss_dssp             CTTCCC----CEECCCHHHHHHHHHHHHHHTTCSSEEECHHHHTTC-CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCCCcc----ccccCChhHHHHHHHHHHHHhcCCCEEEccccEEEE-eCCHHHHHHHHHHHHHHHhhhhhccC
Confidence            2 1 11    13333333321  12233444457999999987643 35899999999999999998776544

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=99.87  E-value=2.6e-21  Score=189.97  Aligned_cols=336  Identities=14%  Similarity=0.159  Sum_probs=186.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEe-ecceEEecCCCCCCChHHHHHHhcCCc
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVE-LGAGWIAGVGGKESNPVWELASKSGLR   84 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d-~G~~~~~~~~~~~~~~~~~l~~~lgl~   84 (496)
                      ++||+|||||++||+||+.|+++|+ +|+|+|+++++||++.+...+|..+| .|+++++.    .++.+++++++++..
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~g~-~v~v~E~~~~~GG~~~~~~~~g~~~~~~G~~~~~~----~~~~~~~~~~~l~~~   75 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKLNK-KVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHT----NDKYIWDYVNDLVEF   75 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTC-CEEEECSSSSSSGGGCEEEETTEEEETTSCCCEEE----SCHHHHHHHHTTSCB
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCC-cEEEEecCCCCCcceEeeccCCceeeccCCceecC----CCHHHHHHHHHhhhh
Confidence            3689999999999999999999999 69999999999999999888899996 99999998    678899999998863


Q ss_pred             cccccCCCcceEEEcCCCcccC--hhH--HHHHHH----HHHHHHHH-Hhcccc-ccchhHHHHHHhhhcCCCCCCChHH
Q 010995           85 TCFSDYTNARYNIYDRSGKIIP--SGV--AADSYK----KAVESAIA-NLKNLE-ATNSNIGEVIKAATELPSSPKTPLE  154 (496)
Q Consensus        85 ~~~~~~~~~~~~~~~~~g~~~~--~~~--~~~~~~----~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  154 (496)
                      .   .+.....  ...+|..++  ...  ...++.    .....+.. ...... ....++.+++.....     ....+
T Consensus        76 ~---~~~~~~~--~~~~g~~~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~g-----~~~~~  145 (367)
T 1i8t_A           76 N---RFTNSPL--AIYKDKLFNLPFNMNTFHQMWGVKDPQEAQNIINAQKKKYGDKVPENLEEQAISLVG-----EDLYQ  145 (367)
T ss_dssp             C---CCCCCCE--EEETTEEEESSBSHHHHHHHHCCCCHHHHHHHHHHHTTTTCCCCCCSHHHHHHHHHH-----HHHHH
T ss_pred             h---hccccce--EEECCeEEEcCCCHHHHHHHhccCCHHHHHHHHHHHhhccCCCCCccHHHHHHHHHh-----HHHHH
Confidence            2   2222222  223555433  221  111110    00111111 111111 112233444432100     00001


Q ss_pred             HHHHHH-----HhhccccccCCcccc---c----ccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeE
Q 010995          155 LAIDFI-----LHDFEMAEVEPISTY---V----DFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVR  222 (496)
Q Consensus       155 ~~~~~~-----~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~  222 (496)
                      ..+..+     ..+...........+   .    .+....+...+++|++.++++|++.           ++|++|++|+
T Consensus       146 ~~~~p~~~~~~~~~~~~lsa~~~~~l~~~~~~~~~~~~~~~~~~p~gG~~~l~~~l~~g-----------~~i~l~~~V~  214 (367)
T 1i8t_A          146 ALIKGYTEKQWGRSAKELPAFIIKRIPVRFTFDNNYFSDRYQGIPVGGYTKLIEKMLEG-----------VDVKLGIDFL  214 (367)
T ss_dssp             HHTHHHHHHHHSSCGGGSCTTSSCCCCBCSSSCCCSCCCSEEECBTTCHHHHHHHHHTT-----------SEEECSCCGG
T ss_pred             HHHHHHHhhhhCCChHHcCHHHHhhceeeeccccccccchhhcccCCCHHHHHHHHhcC-----------CEEEeCCcee
Confidence            111111     111110011001000   0    0111122236789999999998763           5799999999


Q ss_pred             EEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCCCCce
Q 010995          223 ELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEF  302 (496)
Q Consensus       223 ~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~~~~~  302 (496)
                      +|..   +|        .+.||+||+|+|+..+.+.              .+..++|.+...+.+.++.+..+   +..+
T Consensus       215 ~i~~---~v--------~~~~D~VV~a~p~~~~~~~--------------~l~~l~y~s~~~v~~~~d~~~~~---~~~~  266 (367)
T 1i8t_A          215 KDKD---SL--------ASKAHRIIYTGPIDQYFDY--------------RFGALEYRSLKFETERHEFPNFQ---GNAV  266 (367)
T ss_dssp             GSHH---HH--------HTTEEEEEECSCHHHHTTT--------------TTCCCCEEEEEEEEEEESSSCSS---SSSE
T ss_pred             eech---hh--------hccCCEEEEeccHHHHHHH--------------hhCCCCCceEEEEEEEeccccCC---CCeE
Confidence            8862   12        1358999999999998651              13467888888888888876443   2233


Q ss_pred             EEeecCCCCcccc--ceeccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCCCCCCCCeeEecccC--C
Q 010995          303 FIYAHERRGYYTF--WQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWW--N  378 (496)
Q Consensus       303 ~~~~~~~~~~~~~--~~~~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~rw~--~  378 (496)
                      +.+.+....+..+  +.++.+...+..+++..+...                                       |.  .
T Consensus       267 ~~~~~~~~~~~ri~~~~~~~~~~~~~~~v~~e~~~~---------------------------------------~~~~~  307 (367)
T 1i8t_A          267 INFTDANVPYTRIIEHKHFDYVETKHTVVTKEYPLE---------------------------------------WKVGD  307 (367)
T ss_dssp             EEECCTTSSCSEEEEGGGGSCCCCSCEEEEEEEEEE---------------------------------------CCTTS
T ss_pred             EEeCCCCCceeeEEeecccCCCCCCCEEEEEEEecc---------------------------------------cCCCC
Confidence            3333222221111  111111111223333333211                                       21  0


Q ss_pred             CCCCCcccCCCCCCCChH--HHHHHhCCCCcEEEccccccCcCCccchHHHHHHHHHHHHHHH
Q 010995          379 NRFQRGSYSNYPIISDNQ--LVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVE  439 (496)
Q Consensus       379 ~~~~~g~~~~~~~g~~~~--~~~~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~  439 (496)
                      .|    .|+.+.++....  ......+..+|++|||.+...+ ++.||.++.||+++|+++++
T Consensus       308 ~p----~ypv~~~~~~~~~~~~~~~~~~~~~~~~~Gr~~~~~-y~~~~d~i~sa~~~a~~~~~  365 (367)
T 1i8t_A          308 EP----YYPVNDNKNMELFKKYRELASREDKVIFGGRLAEYK-YYDMHQVISAALYQVKNIMS  365 (367)
T ss_dssp             CC----CEECCSHHHHHHHHHHHHHHHHCTTEEECSTTTTTS-CCCHHHHHHHHHHHHHHHHS
T ss_pred             ee----ecccCChhHHHHHHHHHHHHhcCCCEEEcccceeeE-ecCHHHHHHHHHHHHHHHhc
Confidence            11    233333333211  1222223357999999986653 35899999999999998863

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=99.86  E-value=9.8e-21  Score=185.73  Aligned_cols=338  Identities=14%  Similarity=0.170  Sum_probs=193.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeee-eCCcEE-eecceEEecCCCCCCChHHHHHHhcC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEK-FGGVSV-ELGAGWIAGVGGKESNPVWELASKSG   82 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~-~~g~~~-d~G~~~~~~~~~~~~~~~~~l~~~lg   82 (496)
                      ..+||+|||||++||+||+.|+++|. +|+|+|+++++||++++.. ..|+.+ |.|+|+++.    ....+++++++++
T Consensus        28 ~~~dv~IIGaG~aGl~aA~~l~~~g~-~v~v~E~~~~~GG~~~~~~~~~G~~~~~~G~~~~~~----~~~~~~~~~~~~~  102 (397)
T 3hdq_A           28 KGFDYLIVGAGFAGSVLAERLASSGQ-RVLIVDRRPHIGGNAYDCYDDAGVLIHPYGPHIFHT----NSKDVFEYLSRFT  102 (397)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSSGGGCCEECTTSCEECTTSCCCCEE----SCHHHHHHHHTSC
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCC-ceEEEeccCCCCCccceeeccCCceEeecCCcccCC----ChHHHHHHHHHhh
Confidence            45799999999999999999999999 6999999999999999877 678875 999999998    7889999999999


Q ss_pred             CccccccCCCcceEEEcCCCcccCh--hH--HHHHHH-----HHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChH
Q 010995           83 LRTCFSDYTNARYNIYDRSGKIIPS--GV--AADSYK-----KAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPL  153 (496)
Q Consensus        83 l~~~~~~~~~~~~~~~~~~g~~~~~--~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (496)
                      ...   .+....  ....+|+.++.  ..  ...++.     ..................++.+|+...+.     ....
T Consensus       103 ~~~---~~~~~~--~~~~~g~l~~lP~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~s~~e~~~~~~G-----~~~~  172 (397)
T 3hdq_A          103 EWR---PYQHRV--LASVDGQLLPIPINLDTVNRLYGLNLTSFQVEEFFASVAEKVEQVRTSEDVVVSKVG-----RDLY  172 (397)
T ss_dssp             CEE---ECCCBE--EEEETTEEEEESCCHHHHHHHHTCCCCHHHHHHHHHHHCCCCSSCCBHHHHHHHHHH-----HHHH
T ss_pred             hcc---cccccc--eEEECCEEEEcCCChHHHHHhhccCCCHHHHHHHHhhcccCCCCCcCHHHHHHHhcC-----HHHH
Confidence            532   222222  22346766442  21  111111     11111111111111112234444432110     0011


Q ss_pred             HHHHHHHH-hhcc----ccccCCccc------cc-ccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCcee
Q 010995          154 ELAIDFIL-HDFE----MAEVEPIST------YV-DFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVV  221 (496)
Q Consensus       154 ~~~~~~~~-~~~~----~~~~~~~~~------~~-~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V  221 (496)
                      +..++.+. ..+.    ..+...+..      +. .+....+...+++|+.+|+++|++.         .|++|++|++|
T Consensus       173 e~~~~py~~k~~~~~~~~Lsa~~~~Rvp~~~~~d~~yf~~~~qg~P~gGy~~l~e~l~~~---------~g~~V~l~~~v  243 (397)
T 3hdq_A          173 NKFFRGYTRKQWGLDPSELDASVTARVPTRTNRDNRYFADTYQAMPLHGYTRMFQNMLSS---------PNIKVMLNTDY  243 (397)
T ss_dssp             HHHTHHHHHHHHSSCGGGSBTTTGGGSCCCSSCCCBSCCCSEEEEETTCHHHHHHHHTCS---------TTEEEEESCCG
T ss_pred             HHHHHHHhCchhCCCHHHHHHHHHHhcCcccccCccchhhhheeccCCCHHHHHHHHHhc---------cCCEEEECCeE
Confidence            11111111 1111    000000000      00 0101122234689999999998765         78999999999


Q ss_pred             EEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCCCCc
Q 010995          222 RELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKE  301 (496)
Q Consensus       222 ~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~~~~  301 (496)
                      +++             +..+.+|+||+|+|+..+..    .          ....++|.+...+.+.++.+.+..   ..
T Consensus       244 ~~~-------------~~~~~~d~vI~T~P~d~~~~----~----------~~g~L~yrsl~~~~~~~~~~~~~~---~~  293 (397)
T 3hdq_A          244 REI-------------ADFIPFQHMIYTGPVDAFFD----F----------CYGKLPYRSLEFRHETHDTEQLLP---TG  293 (397)
T ss_dssp             GGT-------------TTTSCEEEEEECSCHHHHTT----T----------TTCCCCEEEEEEEEEEESSSCSCS---SS
T ss_pred             Eec-------------cccccCCEEEEcCCHHHHHH----H----------hcCCCCCceEEEEEEEeccccCCC---Ce
Confidence            832             33567999999999998854    1          134678888888888898765443   23


Q ss_pred             eEEeecCCCCccccc--eeccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCCCCCCCCeeEecccCCC
Q 010995          302 FFIYAHERRGYYTFW--QHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNN  379 (496)
Q Consensus       302 ~~~~~~~~~~~~~~~--~~~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~rw~~~  379 (496)
                      ++-+.+.+ ++..+.  .++.....+.++++..|.....+..-..++++-.+.+.                         
T Consensus       294 ~vn~~d~~-p~tRi~e~k~~~~~~~~~t~i~~Ey~~~~~~pyYpv~~~~~~~~~~-------------------------  347 (397)
T 3hdq_A          294 TVNYPNDY-AYTRVSEFKHITGQRHHQTSVVYEYPRAEGDPYYPVPRPENAELYK-------------------------  347 (397)
T ss_dssp             EEECSSSS-SCSEEEEHHHHHCCCCSSEEEEEEEEESSSSCCEECCSHHHHHHHH-------------------------
T ss_pred             EEEeCCCC-cceEEEeecccCCCCCCCEEEEEEECCCCCccccccCchhHHHHHH-------------------------
Confidence            33444443 443332  23322223566776665431111111122211111111                         


Q ss_pred             CCCCcccCCCCCCCChHHHHHHhCCCCcEEEccccccCcCCccchHHHHHHHHHHHHHHHH
Q 010995          380 RFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEK  440 (496)
Q Consensus       380 ~~~~g~~~~~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~  440 (496)
                                       .+..+....+||+|+|-.-.-.| -.|+-++.+|+.+++.++..
T Consensus       348 -----------------~y~~~a~~~~~v~~~GRlg~y~Y-~~md~~i~~al~~~~~~~~~  390 (397)
T 3hdq_A          348 -----------------KYEALADAAQDVTFVGRLATYRY-YNMDQVVAQALATFRRLQGQ  390 (397)
T ss_dssp             -----------------HHHHHHHHCTTEEECSTTTTTCC-CCHHHHHHHHHHHHHHHHC-
T ss_pred             -----------------HHHHHHhcCCCEEEcccceEEEe-ccHHHHHHHHHHHHHHHhcc
Confidence                             11222222468999998876644 57999999999999887653

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.86  E-value=1.4e-19  Score=171.34  Aligned_cols=59  Identities=27%  Similarity=0.611  Sum_probs=55.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEec
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAG   65 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~   65 (496)
                      ..||+|||||+|||+||+.|+++|+ +|+|||+++++||++.+.+.++..+|.|++++..
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~-~V~v~Ek~~~~GG~~~~~~~~~~~~d~g~~~~~~   60 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGH-QVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFTA   60 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCGGGCEEEETTEEEECSCCCBCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCCCCCCcccccccCCceeecCcccccc
Confidence            5799999999999999999999999 6999999999999999999999999999988765

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=99.85  E-value=1.4e-19  Score=183.01  Aligned_cols=229  Identities=16%  Similarity=0.215  Sum_probs=133.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCC-cE---------------EeecceEEecCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGG-VS---------------VELGAGWIAGVGG   68 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g-~~---------------~d~G~~~~~~~~~   68 (496)
                      ..+||||||||++||+||+.|+++|+ +|+|||+++++||+++|.+.+| +.               ++.|.++...++.
T Consensus        10 ~~~dvvVIGaG~~GL~aA~~La~~G~-~V~vlE~~~~~GG~~~t~~~~g~~~~~d~~~~~~~~~~~~~~~g~~~~~~l~P   88 (453)
T 2bcg_G           10 TDYDVIVLGTGITECILSGLLSVDGK-KVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLIP   88 (453)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCGGGCEECHHHHHHHHCSSCCCHHHHHHHHCCGGGCCEESSC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCCCCCccccceeccchhceeccCCccccCcchhcccccceeecccc
Confidence            46899999999999999999999999 6999999999999999976544 11               3444444433110


Q ss_pred             ---CCCChHHHHHHhcCCcccc--ccCCCcceEEEcCCCccc--ChhHHH------------HHHHHHHHHHHHHhcc--
Q 010995           69 ---KESNPVWELASKSGLRTCF--SDYTNARYNIYDRSGKII--PSGVAA------------DSYKKAVESAIANLKN--  127 (496)
Q Consensus        69 ---~~~~~~~~l~~~lgl~~~~--~~~~~~~~~~~~~~g~~~--~~~~~~------------~~~~~~~~~~~~~~~~--  127 (496)
                         .....+.++++++|+....  .... ..+ . ..+|..+  +.....            ..+.++.+........  
T Consensus        89 ~~l~~~~~l~~ll~~lg~~~~l~~~~~~-~~~-~-~~~g~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p  165 (453)
T 2bcg_G           89 KFLMANGELTNILIHTDVTRYVDFKQVS-GSY-V-FKQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDL  165 (453)
T ss_dssp             CBEETTSHHHHHHHHHTGGGTCCEEECC-CEE-E-EETTEEEECCSSHHHHHHCTTSCHHHHHHHHHHHHHHHHCBTTBG
T ss_pred             ceeecCcHHHHHHHhcCCccceEEEEcc-cee-E-EeCCeEEECCCChHHHHhhhccchhhHHHHHHHHHHHHHhccCCc
Confidence               0346788999999986433  1122 112 2 2455543  222111            1111222221111110  


Q ss_pred             -----ccccchhHHHHHHhhhcCCCCCCChHHHHHHHHHhhccccc---------cCCc---cc----ccccCCcceeee
Q 010995          128 -----LEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAE---------VEPI---ST----YVDFGEREFLVA  186 (496)
Q Consensus       128 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~---~~----~~~~~~~~~~~~  186 (496)
                           .+....++.+++....    ..    ....+++.....+..         ...+   ..    ...++.. .+.+
T Consensus       166 ~~~~~~~~~~~s~~~~l~~~~----~~----~~l~~~l~~~~~l~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~-~~~~  236 (453)
T 2bcg_G          166 STHQGLDLDKNTMDEVYYKFG----LG----NSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKS-PYLY  236 (453)
T ss_dssp             GGSTTCCTTTSBHHHHHHHTT----CC----HHHHHHHHHHTSCCSSSGGGGSBHHHHHHHHHHHHHHHHHHSSC-SEEE
T ss_pred             hhhhccccccCCHHHHHHHhC----CC----HHHHHHHHHHHHhccCccccCCchHHHHHHHHHHHHHHHhhcCC-ceEe
Confidence                 0011223445554310    00    111111111111000         0000   00    0112222 2335


Q ss_pred             CcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEc--CCceE-EEeCCCcEEEcCEEEEecChH
Q 010995          187 DERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHS--RNGVT-VKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       187 ~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~--~~~v~-V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      +++|++.++++|++.+.+      .|++|++|++|++|..+  ++++. |.+ +|+++.||+||+|+++.
T Consensus       237 p~gG~~~l~~al~~~~~~------~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~  299 (453)
T 2bcg_G          237 PMYGLGELPQGFARLSAI------YGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYF  299 (453)
T ss_dssp             ETTCTTHHHHHHHHHHHH------TTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGC
T ss_pred             eCCCHHHHHHHHHHHHHH------cCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCcc
Confidence            689999999999999877      79999999999999988  77764 666 57789999999999875

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=99.79  E-value=1.6e-18  Score=168.55  Aligned_cols=79  Identities=32%  Similarity=0.520  Sum_probs=71.4

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC-CCCCeEEEeee----------eCCcEEeecceEEecCCCCCCC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEAS-DRIGGRVRNEK----------FGGVSVELGAGWIAGVGGKESN   72 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~-~~~GGr~~t~~----------~~g~~~d~G~~~~~~~~~~~~~   72 (496)
                      ...+||+|||||++||+||+.|+++|+ +|+|||++ +++|||+.|.+          ..+..+|.|++++..    .+.
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~-~V~VlE~~~~~vGGr~~t~~~~~~~~~~~~~~~~~~e~G~~~~~~----~~~  116 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGH-DVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAEAGAMRLPS----FHP  116 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSC-EEEEECSCSSCCBTTCCEECCCTTSCCSSSSTTCCEESSCCCEET----TCH
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCC-cEEEEeccccccCCceeeecccccccccccCCCcEEecCceeecc----hHH
Confidence            356899999999999999999999999 79999999 99999999977          357899999999987    778


Q ss_pred             hHHHHHHhcCCcccc
Q 010995           73 PVWELASKSGLRTCF   87 (496)
Q Consensus        73 ~~~~l~~~lgl~~~~   87 (496)
                      .+.++++++|+....
T Consensus       117 ~~~~~~~~lGl~~~~  131 (376)
T 2e1m_A          117 LTLALIDKLGLKRRL  131 (376)
T ss_dssp             HHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHcCCCcce
Confidence            899999999998654

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=99.78  E-value=1.4e-18  Score=173.73  Aligned_cols=226  Identities=19%  Similarity=0.244  Sum_probs=140.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeC--------------------CcEEeecceEEe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFG--------------------GVSVELGAGWIA   64 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~--------------------g~~~d~G~~~~~   64 (496)
                      ..+||+|||+|++|+++|+.|+++|+ +|+|+|+++++||++.+.+.+                    ++.+|++++.+.
T Consensus        19 ~~~dv~iiG~G~~g~~~a~~l~~~g~-~v~~~e~~~~~Gg~~~s~~~~~l~~~~~~g~~~~~~~g~~R~y~iDL~P~~l~   97 (475)
T 3p1w_A           19 EHYDVIILGTGLKECILSGLLSHYGK-KILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYGENRHWNVDLIPKFIL   97 (475)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCGGGCEECHHHHHHHHCTTSCCCGGGCCGGGCCEESSCCBEE
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCC-cEEEEeccCCCCCCccccchhhhhhhcccCCCcccccccccceEEeecCeEee
Confidence            45899999999999999999999999 699999999999999987532                    468999988886


Q ss_pred             cCCCCCCChHHHHHHhcCCccccccCCCcceE-EEc--------CCCccc--ChhHHH------------HHHHHHHHHH
Q 010995           65 GVGGKESNPVWELASKSGLRTCFSDYTNARYN-IYD--------RSGKII--PSGVAA------------DSYKKAVESA  121 (496)
Q Consensus        65 ~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~-~~~--------~~g~~~--~~~~~~------------~~~~~~~~~~  121 (496)
                           ...++.+++.++|+.... .|...... ++.        .+|+..  |.....            ..+.+++...
T Consensus        98 -----~~g~L~~lL~~~gv~~yl-ef~~~~~~y~~~~~~~~~~~~~g~~~~VPss~~e~~~~~lLs~~eK~~l~kFL~~l  171 (475)
T 3p1w_A           98 -----VGGNLVKILKKTRVTNYL-EWLVVEGSYVYQHQKKGFLTSEKFIHKVPATDMEALVSPLLSLMEKNRCKNFYQYV  171 (475)
T ss_dssp             -----TTSHHHHHHHHTTCGGGS-CEEECSEEEEEEEECCCSSSCCEEEEECCCSHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred             -----cCcHHHHHHHHCCchhee-EEEecCcceEEecCccccccCCCceEeCCCCHHHHhhccCCCHHHHHHHHHHHHHH
Confidence                 466899999999998765 22221111 221        134333  322111            1112222222


Q ss_pred             HHHhcc-------ccccchhHHHHHHhhhcCCCCCCChHHHHHHHHHhhccccc------cC---Cc---c----ccccc
Q 010995          122 IANLKN-------LEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAE------VE---PI---S----TYVDF  178 (496)
Q Consensus       122 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~---~----~~~~~  178 (496)
                      ......       .+....++.+|+...    ..+    ....+++.....+..      ..   .+   .    .+..+
T Consensus       172 ~~~~~~~~~~~~~~~l~~~s~~e~l~~~----gls----~~l~~fl~~alaL~~~~~~~~~~a~~~l~ri~~y~~Sl~~y  243 (475)
T 3p1w_A          172 SEWDANKRNTWDNLDPYKLTMLEIYKHF----NLC----QLTIDFLGHAVALYLNDDYLKQPAYLTLERIKLYMQSISAF  243 (475)
T ss_dssp             HHCCTTCGGGSTTCCTTTSBHHHHHHHT----TCC----HHHHHHHHHHTSCCSSSGGGGSBHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhccchhhhcccccCCCHHHHHHHc----CCC----HHHHHHHHHHHHhhcCCCcccCCHHHHHHHHHHHHHHHhhc
Confidence            111100       111123466676641    111    111122211110000      00   00   0    11223


Q ss_pred             CCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEE-cCCceE-EEeCCCcEEEcCEEEEecCh
Q 010995          179 GEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQH-SRNGVT-VKTEDGCVYEANYVILSASI  252 (496)
Q Consensus       179 ~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~-~~~~v~-V~~~~G~~~~ad~VI~A~p~  252 (496)
                      +.. .+.++++|++.|+++|++.+.+      .|++|+++++|++|.. +++++. |++.+|+++.||+||++...
T Consensus       244 g~s-~~~yp~gG~~~L~~aL~r~~~~------~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~  312 (475)
T 3p1w_A          244 GKS-PFIYPLYGLGGIPEGFSRMCAI------NGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSY  312 (475)
T ss_dssp             SSC-SEEEETTCTTHHHHHHHHHHHH------C--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGG
T ss_pred             CCC-ceEEECCCHHHHHHHHHHHHHH------cCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCc
Confidence            432 3446789999999999999887      7999999999999998 666654 88988888999999999864

>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=99.78  E-value=1.7e-19  Score=157.51  Aligned_cols=119  Identities=20%  Similarity=0.274  Sum_probs=102.5

Q ss_pred             cEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCCCCCCCC-ee--EecccCCCCCCCcccCCCCCCCChHHHHHHhC
Q 010995          327 NILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNAT-DI--LVPRWWNNRFQRGSYSNYPIISDNQLVNSIRA  403 (496)
Q Consensus       327 ~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~-~~--~~~rw~~~~~~~g~~~~~~~g~~~~~~~~~~~  403 (496)
                      .+|++++.++.+..+..++++++++.++++|+++||... .+. .+  .+++|.++||+.|+|++++||....+.+.+.+
T Consensus        37 ~~L~~~~~g~~A~~~~~l~~~e~~~~~l~~L~~~~g~~~-~~~~~~~~~~~~W~~dp~~~Ga~s~~~pg~~~~~~~~l~~  115 (181)
T 2e1m_C           37 VVLAAYSWSDDAARWDSFDDAERYGYALENLQSVHGRRI-EVFYTGAGQTQSWLRDPYACGEAAVYTPHQMTAFHLDVVR  115 (181)
T ss_dssp             EEEEEEEEHHHHHHHTTSCTTTTHHHHHHHHHHHHCGGG-GGTEEEEEEEEESSSCTTTSSSEECCCTTHHHHHHHHHHS
T ss_pred             EEEEEEcCChHHHHHHcCCHHHHHHHHHHHHHHHhCCCc-HhhccCcceecccCCCCCCCCcccCcCCCchHHHHHHHhC
Confidence            467777777788899999999999999999999997655 444 67  89999999999999999999987677889999


Q ss_pred             CCCcEEEccccccCcCCccchHHHHHHHHHHHHHHHHHhccccc
Q 010995          404 PVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNER  447 (496)
Q Consensus       404 p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~~~~~~  447 (496)
                      |.+|||||||+++. ++||||||++||.+||++|++.++.....
T Consensus       116 p~grl~FAGe~ts~-~~g~~eGAl~SG~raA~~i~~~l~~~~~~  158 (181)
T 2e1m_C          116 PEGPVYFAGEHVSL-KHAWIEGAVETAVRAAIAVNEAPVGDTGV  158 (181)
T ss_dssp             CBTTEEECSGGGTT-STTSHHHHHHHHHHHHHHHHTCCC-----
T ss_pred             CCCcEEEEEHHHcC-CccCHHHHHHHHHHHHHHHHHHhccCCCC
Confidence            99999999999996 88999999999999999999988655443

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=99.78  E-value=2.4e-18  Score=172.72  Aligned_cols=229  Identities=17%  Similarity=0.242  Sum_probs=140.7

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeee-----e----------------CCcEEeecceE
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEK-----F----------------GGVSVELGAGW   62 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~-----~----------------~g~~~d~G~~~   62 (496)
                      ...+||+|||||++||+||+.|+++|+ +|+|+|+++++||+++|.+     .                .++.+|+|+++
T Consensus         4 ~~~~~v~iiG~G~~gl~~a~~l~~~g~-~v~~~e~~~~~gg~~~s~~~~~~g~~~~~~~~~~~~~~~~g~~~~~d~gP~~   82 (433)
T 1d5t_A            4 DEEYDVIVLGTGLTECILSGIMSVNGK-KVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKF   82 (433)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCTTSCEECSHHHHHHHTTCTTCCCGGGCCGGGCCEESSCCB
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCccccccccccHHHHHhhccCCCCChhHhcccCceEEccCcce
Confidence            346899999999999999999999999 6999999999999999987     1                34778999988


Q ss_pred             EecCCCCCCChHHHHHHhcCCccccccCCCcceEEEcCCCccc--ChhHHHH------------HHHHHHHHHHHHhcc-
Q 010995           63 IAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKII--PSGVAAD------------SYKKAVESAIANLKN-  127 (496)
Q Consensus        63 ~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~------------~~~~~~~~~~~~~~~-  127 (496)
                      +..     ...+.++++++|+.... ++......+...+|..+  +......            .+.++.+........ 
T Consensus        83 l~~-----~~~l~~ll~~lgl~~~l-~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  156 (433)
T 1d5t_A           83 LMA-----NGQLVKMLLYTEVTRYL-DFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDEND  156 (433)
T ss_dssp             EET-----TSHHHHHHHHHTGGGGC-CEEECCEEEEEETTEEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHHHHCCTTC
T ss_pred             eec-----cchHHHHHHHcCCccce-EEEEeCceEEeeCCEEEECCCCHHHHhhCcccChhhHHHHHHHHHHHHhhcccC
Confidence            875     45788999999987543 11111111223456542  3221110            111222222111100 


Q ss_pred             ------ccccchhHHHHHHhhhcCCCCCCChHHHHHHHHHhhcccc------ccCCc---c---cc----cccCCcceee
Q 010995          128 ------LEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMA------EVEPI---S---TY----VDFGEREFLV  185 (496)
Q Consensus       128 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~---~---~~----~~~~~~~~~~  185 (496)
                            .+....++.+++....     ..   ....+++...+.+.      .....   .   .+    ..++.. .+.
T Consensus       157 p~~~~~~~~~~~s~~~~l~~~~-----~~---~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~g~~-~~~  227 (433)
T 1d5t_A          157 PKTFEGVDPQNTSMRDVYRKFD-----LG---QDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKS-PYL  227 (433)
T ss_dssp             GGGGTTCCTTTSBHHHHHHHTT-----CC---HHHHHHHHHHTSCCSSSGGGGSBSHHHHHHHHHHHHSCCSSSCC-SEE
T ss_pred             chhccccccccCCHHHHHHHcC-----CC---HHHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHhcCCC-cEE
Confidence                  0111224555555410     00   11111111110000      00000   0   00    112222 244


Q ss_pred             eCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995          186 ADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       186 ~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      ++++|++.++++|++.+.+      .|++|++|++|++|..+++++.+...+|+++.||+||+|+|+..
T Consensus       228 ~p~gG~~~l~~~l~~~~~~------~G~~i~~~~~V~~I~~~~~~v~~v~~~g~~~~ad~VV~a~~~~~  290 (433)
T 1d5t_A          228 YPLYGLGELPQGFARLSAI------YGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVP  290 (433)
T ss_dssp             EETTCTTHHHHHHHHHHHH------HTCCCBCSCCCCEEEEETTEEEEEEETTEEEECSEEEECGGGCG
T ss_pred             EeCcCHHHHHHHHHHHHHH------cCCEEECCCEEEEEEEeCCEEEEEEECCeEEECCEEEECCCCCc
Confidence            6689999999999998876      79999999999999998888773334778899999999998864

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.55  E-value=1.8e-13  Score=135.04  Aligned_cols=57  Identities=14%  Similarity=0.123  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      ...+++.|.+.+.+      .|++|+++++|++|..+++++.|++.+| ++.||+||+|+....
T Consensus       153 ~~~~~~~l~~~a~~------~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          153 TDALHQGYLRGIRR------NQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAWC  209 (381)
T ss_dssp             HHHHHHHHHHHHHH------TTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHH------CCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChhH
Confidence            46788888888776      7999999999999999888888999887 899999999998754

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.48  E-value=1.4e-12  Score=129.13  Aligned_cols=39  Identities=28%  Similarity=0.570  Sum_probs=35.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      +++||+|||||++||+||+.|+++|+ +|+|+|+++.+|.
T Consensus         3 e~yDViIVGaGpaGl~~A~~La~~G~-~V~v~Er~~~~~~   41 (397)
T 3oz2_A            3 ETYDVLVVGGGPGGSTAARYAAKYGL-KTLMIEKRPEIGS   41 (397)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSTTC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCCCC
Confidence            45899999999999999999999999 6999999887764

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.46  E-value=1e-12  Score=135.67  Aligned_cols=57  Identities=11%  Similarity=0.133  Sum_probs=45.5

Q ss_pred             HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCC----ceEEEeCCC---cEEEcCEEEEecChHH
Q 010995          192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRN----GVTVKTEDG---CVYEANYVILSASIGV  254 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~----~v~V~~~~G---~~~~ad~VI~A~p~~~  254 (496)
                      ..+.+.|.+.+.+      .|++|+++++|++|+.+++    +|+|++.++   .+++||+||.|.....
T Consensus       120 ~~l~~~L~~~a~~------~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          120 DKLEPILLAQARK------HGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRS  183 (535)
T ss_dssp             HHHHHHHHHHHHH------TTCEEESSCEEEEEEEECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHHh------CCCEEEeCCEEEEEEECCCCccccEEEEEEcCCCeEEEEeCEEEECCCCcc
Confidence            3455555555555      6899999999999999888    888877665   6899999999998754

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.44  E-value=1.1e-12  Score=132.15  Aligned_cols=59  Identities=22%  Similarity=0.200  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCc---eeEEEEEcCCceE-EEeCCCcEEEcCEEEEecChHHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNK---VVRELQHSRNGVT-VKTEDGCVYEANYVILSASIGVL  255 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~---~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~A~p~~~l  255 (496)
                      ...+++.|.+.+.+      .|++|++++   +|++|..++++|+ |++.+|+++.||.||+|+....-
T Consensus       160 ~~~~~~~L~~~a~~------~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~  222 (438)
T 3dje_A          160 ARNALVAAAREAQR------MGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAG  222 (438)
T ss_dssp             HHHHHHHHHHHHHH------TTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGGG
T ss_pred             HHHHHHHHHHHHHh------cCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCChh
Confidence            46778888887776      799999999   9999999888988 99999888999999999988643

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=99.41  E-value=5.2e-12  Score=129.93  Aligned_cols=90  Identities=11%  Similarity=0.010  Sum_probs=66.6

Q ss_pred             eeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcC--CceE-EEeCCCcEEEcCEEEEecChHHHhcCC
Q 010995          183 FLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSR--NGVT-VKTEDGCVYEANYVILSASIGVLQSDL  259 (496)
Q Consensus       183 ~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~--~~v~-V~~~~G~~~~ad~VI~A~p~~~l~~~l  259 (496)
                      .+.+..+|++.|+++|++.+..      .|++|++|++|++|..++  ++++ |.+.+|+++.||+||++.  ..+..  
T Consensus       369 g~~yp~GG~g~L~qaL~r~~~~------~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~--~~lp~--  438 (650)
T 1vg0_A          369 PFLFPLYGQGELPQCFCRMCAV------FGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIED--SYLSE--  438 (650)
T ss_dssp             SEEEETTCTTHHHHHHHHHHHH------TTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEG--GGBCT--
T ss_pred             ceEEeCCchhHHHHHHHHHHHH------cCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEECh--hhcCH--
Confidence            3446689999999999998887      799999999999999877  6666 556779999999999832  22211  


Q ss_pred             cccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCC
Q 010995          260 ISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFW  294 (496)
Q Consensus       260 i~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w  294 (496)
                           ..       ....+++.+.++.+.++.+.-
T Consensus       439 -----~~-------~~~~~~~~v~R~i~i~~~pi~  461 (650)
T 1vg0_A          439 -----NT-------CSRVQYRQISRAVLITDGSVL  461 (650)
T ss_dssp             -----TT-------TTTCCCEEEEEEEEEESSCSS
T ss_pred             -----hH-------hccccccceEEEEEEecCCCC
Confidence                 11       112345667788888887653

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.41  E-value=4.1e-13  Score=133.40  Aligned_cols=60  Identities=15%  Similarity=0.298  Sum_probs=51.2

Q ss_pred             cccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995          188 ERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       188 ~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      ......+.+.|.+.+.+      .|++|+++++|++|..+++++.|.+.+| +++||+||+|+....
T Consensus       128 ~~~~~~l~~~L~~~l~~------~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~VIlAtG~~S  187 (417)
T 3v76_A          128 DHSAKDIIRMLMAEMKE------AGVQLRLETSIGEVERTASGFRVTTSAG-TVDAASLVVASGGKS  187 (417)
T ss_dssp             SSCHHHHHHHHHHHHHH------HTCEEECSCCEEEEEEETTEEEEEETTE-EEEESEEEECCCCSS
T ss_pred             CCCHHHHHHHHHHHHHH------CCCEEEECCEEEEEEEeCCEEEEEECCc-EEEeeEEEECCCCcc
Confidence            34566788888887776      6999999999999999888899999888 899999999998643

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.41  E-value=4.2e-11  Score=122.10  Aligned_cols=155  Identities=18%  Similarity=0.198  Sum_probs=96.8

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGL   83 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl   83 (496)
                      .+++||+|||||++||++|..|+++|+ +|+|+|+.+.++...+            +..+       .....++++++|+
T Consensus         9 ~~~~dVlIVGaGpaGl~~A~~La~~G~-~v~vlE~~~~~~~~~r------------~~~l-------~~~~~~~l~~lGl   68 (500)
T 2qa1_A            9 RSDAAVIVVGAGPAGMMLAGELRLAGV-EVVVLERLVERTGESR------------GLGF-------TARTMEVFDQRGI   68 (500)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCCC-CCCCC------------SEEE-------CHHHHHHHHTTTC
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCCCCCCCC------------cceE-------CHHHHHHHHHCCC
Confidence            567899999999999999999999999 6999999876542100            1122       3456788899998


Q ss_pred             ccccccCCCcceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHHhh
Q 010995           84 RTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHD  163 (496)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (496)
                      ....... . ........+..+                                                          
T Consensus        69 ~~~~~~~-~-~~~~~~~~~~~~----------------------------------------------------------   88 (500)
T 2qa1_A           69 LPRFGEV-E-TSTQGHFGGLPI----------------------------------------------------------   88 (500)
T ss_dssp             GGGGCSC-C-BCCEEEETTEEE----------------------------------------------------------
T ss_pred             HHHHHhc-c-ccccccccceec----------------------------------------------------------
Confidence            7654221 0 000000000000                                                          


Q ss_pred             ccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCc---E
Q 010995          164 FEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGC---V  240 (496)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~---~  240 (496)
                       ......     ..+.  ..+...   -..+.+.|.+.+.+      .|++|+++++|++|+.++++|+|++.++.   +
T Consensus        89 -~~~~~~-----~~~~--~~~~i~---~~~l~~~L~~~~~~------~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~  151 (500)
T 2qa1_A           89 -DFGVLE-----GAWQ--AAKTVP---QSVTETHLEQWATG------LGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHT  151 (500)
T ss_dssp             -EGGGST-----TGGG--CEEEEE---HHHHHHHHHHHHHH------TTCEEEETCEEEEEEEETTEEEEEEEETTEEEE
T ss_pred             -ccccCC-----CCCC--ceeecC---HHHHHHHHHHHHHH------CCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEE
Confidence             000000     0000  011111   23344455555544      68999999999999999999988877664   7


Q ss_pred             EEcCEEEEecChHHH
Q 010995          241 YEANYVILSASIGVL  255 (496)
Q Consensus       241 ~~ad~VI~A~p~~~l  255 (496)
                      ++||+||.|......
T Consensus       152 ~~a~~vVgADG~~S~  166 (500)
T 2qa1_A          152 LRAAYLVGCDGGRSS  166 (500)
T ss_dssp             EEESEEEECCCTTCH
T ss_pred             EEeCEEEECCCcchH
Confidence            999999999887654

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.40  E-value=3.5e-12  Score=125.07  Aligned_cols=58  Identities=10%  Similarity=0.063  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCc-eEEEeCCC--cEEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNG-VTVKTEDG--CVYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v~V~~~~G--~~~~ad~VI~A~p~~~  254 (496)
                      ...+.+.|.+.+.+      .|++|+++++|++|..++++ +.|.+.+|  .+++||.||+|+....
T Consensus       149 ~~~~~~~l~~~~~~------~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s  209 (369)
T 3dme_A          149 SHALMLAYQGDAES------DGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHA  209 (369)
T ss_dssp             HHHHHHHHHHHHHH------TTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHH------CCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcch
Confidence            56788888888776      79999999999999998766 88888887  4899999999998754

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.40  E-value=5.7e-11  Score=121.12  Aligned_cols=154  Identities=19%  Similarity=0.204  Sum_probs=97.3

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGL   83 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl   83 (496)
                      ...+||+|||||++||++|..|+++|+ +|+|+|+.+.++...+            +..+       .....++++++|+
T Consensus        10 ~~~~dVlIVGaGpaGl~~A~~La~~G~-~v~vlE~~~~~~~~~r------------~~~l-------~~~~~~~l~~lGl   69 (499)
T 2qa2_A           10 RSDASVIVVGAGPAGLMLAGELRLGGV-DVMVLEQLPQRTGESR------------GLGF-------TARTMEVFDQRGI   69 (499)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESCSSCCCCCC------------SEEE-------CHHHHHHHHHTTC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCCCCCCCCc------------eeEE-------CHHHHHHHHHCCC
Confidence            457899999999999999999999999 6999999876532100            1122       3456788999998


Q ss_pred             ccccccCCCcceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHHhh
Q 010995           84 RTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHD  163 (496)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (496)
                      ....... . ........+..                            .                              
T Consensus        70 ~~~~~~~-~-~~~~~~~~~~~----------------------------~------------------------------   89 (499)
T 2qa2_A           70 LPAFGPV-E-TSTQGHFGGRP----------------------------V------------------------------   89 (499)
T ss_dssp             GGGGCSC-C-EESEEEETTEE----------------------------E------------------------------
T ss_pred             HHHHHhc-c-ccccceeccee----------------------------c------------------------------
Confidence            7655321 1 00000000000                            0                              


Q ss_pred             ccccccCCcccccccCCcce-eeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCc---
Q 010995          164 FEMAEVEPISTYVDFGEREF-LVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGC---  239 (496)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~---  239 (496)
                       .....        ...... +...   -..+.+.|.+.+.+      .|++|+++++|++|+.++++|+|++.++.   
T Consensus        90 -~~~~~--------~~~~~~~~~i~---~~~l~~~L~~~~~~------~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~  151 (499)
T 2qa2_A           90 -DFGVL--------EGAHYGVKAVP---QSTTESVLEEWALG------RGAELLRGHTVRALTDEGDHVVVEVEGPDGPR  151 (499)
T ss_dssp             -EGGGS--------TTCCCEEEEEE---HHHHHHHHHHHHHH------TTCEEEESCEEEEEEECSSCEEEEEECSSCEE
T ss_pred             -ccccC--------CCCCCceEecC---HHHHHHHHHHHHHh------CCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcE
Confidence             00000        000001 1111   23345555555544      68999999999999999999998887764   


Q ss_pred             EEEcCEEEEecChHHH
Q 010995          240 VYEANYVILSASIGVL  255 (496)
Q Consensus       240 ~~~ad~VI~A~p~~~l  255 (496)
                      +++||+||.|......
T Consensus       152 ~~~a~~vVgADG~~S~  167 (499)
T 2qa2_A          152 SLTTRYVVGCDGGRST  167 (499)
T ss_dssp             EEEEEEEEECCCTTCH
T ss_pred             EEEeCEEEEccCcccH
Confidence            7999999999887654

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.40  E-value=1.3e-11  Score=123.55  Aligned_cols=57  Identities=16%  Similarity=0.211  Sum_probs=44.1

Q ss_pred             HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCce--EEEeCCCc--EEEcCEEEEecChHH
Q 010995          192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGV--TVKTEDGC--VYEANYVILSASIGV  254 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v--~V~~~~G~--~~~ad~VI~A~p~~~  254 (496)
                      ..+.+.|.+.+.+      .|++|+++++|++|..+++++  .|.+.+|+  +++||.||.|.....
T Consensus       106 ~~~~~~L~~~a~~------~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s  166 (421)
T 3nix_A          106 GNFDKTLADEAAR------QGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGR  166 (421)
T ss_dssp             HHHHHHHHHHHHH------HTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGC
T ss_pred             HHHHHHHHHHHHh------CCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCch
Confidence            3455555555554      699999999999999987764  46678886  699999999998754

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.38  E-value=8.8e-12  Score=123.70  Aligned_cols=153  Identities=20%  Similarity=0.284  Sum_probs=99.6

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHh
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASK   80 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~   80 (496)
                      |+ ...+||+|||||++||++|..|+++|+ +|+|+|+++.+..     .       .|... .     ..+...+++++
T Consensus         1 M~-~~~~~V~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~~~-----~-------~~~g~-~-----l~~~~~~~l~~   60 (397)
T 2vou_A            1 MS-PTTDRIAVVGGSISGLTAALMLRDAGV-DVDVYERSPQPLS-----G-------FGTGI-V-----VQPELVHYLLE   60 (397)
T ss_dssp             -C-CCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSSCC-----C-------CSCEE-E-----CCHHHHHHHHH
T ss_pred             CC-CCCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEecCCCCCC-----c-------ccccc-c-----cChhHHHHHHH
Confidence            54 356899999999999999999999999 7999999875311     0       01111 1     23467788999


Q ss_pred             cCCccccccCCCcceEEEcC-CCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHH
Q 010995           81 SGLRTCFSDYTNARYNIYDR-SGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDF  159 (496)
Q Consensus        81 lgl~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (496)
                      +|+.............++.. +|..+..                                                    
T Consensus        61 ~g~~~~~~~~~~~~~~~~~~~~g~~~~~----------------------------------------------------   88 (397)
T 2vou_A           61 QGVELDSISVPSSSMEYVDALTGERVGS----------------------------------------------------   88 (397)
T ss_dssp             TTCCGGGTCBCCCEEEEEETTTCCEEEE----------------------------------------------------
T ss_pred             cCCccccccccccceEEEecCCCCcccc----------------------------------------------------
Confidence            99865111111111222222 2221000                                                    


Q ss_pred             HHhhccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCc
Q 010995          160 ILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGC  239 (496)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~  239 (496)
                                      .....  ..    .....+.+.|.+.+        .|++|+++++|++|+.++++|+|++.+|+
T Consensus        89 ----------------~~~~~--~~----~~~~~l~~~L~~~~--------~~~~i~~~~~v~~i~~~~~~v~v~~~~g~  138 (397)
T 2vou_A           89 ----------------VPADW--RF----TSYDSIYGGLYELF--------GPERYHTSKCLVGLSQDSETVQMRFSDGT  138 (397)
T ss_dssp             ----------------EECCC--CE----EEHHHHHHHHHHHH--------CSTTEETTCCEEEEEECSSCEEEEETTSC
T ss_pred             ----------------ccCcc--cc----cCHHHHHHHHHHhC--------CCcEEEcCCEEEEEEecCCEEEEEECCCC
Confidence                            00000  00    12345666666654        47899999999999999899999999998


Q ss_pred             EEEcCEEEEecChHHH
Q 010995          240 VYEANYVILSASIGVL  255 (496)
Q Consensus       240 ~~~ad~VI~A~p~~~l  255 (496)
                      +++||.||.|......
T Consensus       139 ~~~ad~vV~AdG~~S~  154 (397)
T 2vou_A          139 KAEANWVIGADGGASV  154 (397)
T ss_dssp             EEEESEEEECCCTTCH
T ss_pred             EEECCEEEECCCcchh
Confidence            9999999999987554

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.36  E-value=9.8e-12  Score=123.83  Aligned_cols=158  Identities=23%  Similarity=0.234  Sum_probs=98.9

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGL   83 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl   83 (496)
                      .+++||+|||||++||++|+.|+++|+ +|+|+|+.+.++....            +..       -.....++++++|+
T Consensus        21 ~~~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~E~~~~~~~~~~------------~~~-------l~~~~~~~l~~lg~   80 (407)
T 3rp8_A           21 QGHMKAIVIGAGIGGLSAAVALKQSGI-DCDVYEAVKEIKPVGA------------AIS-------VWPNGVKCMAHLGM   80 (407)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSCC----C------------EEE-------ECHHHHHHHHHTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCCCCCCcCe------------eEE-------ECHHHHHHHHHCCC
Confidence            456899999999999999999999999 7999999876532111            111       12356778888888


Q ss_pred             cccccc--CCCcceEEEcCC-CcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHH
Q 010995           84 RTCFSD--YTNARYNIYDRS-GKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFI  160 (496)
Q Consensus        84 ~~~~~~--~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (496)
                      ......  .......++..+ |..+..-                         ....+...                   
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~-------------------------~~~~~~~~-------------------  116 (407)
T 3rp8_A           81 GDIMETFGGPLRRMAYRDFRSGENMTQF-------------------------SLAPLIER-------------------  116 (407)
T ss_dssp             HHHHHHHSCCCCEEEEEETTTCCEEEEE-------------------------ECHHHHHH-------------------
T ss_pred             HHHHHhhcCCCcceEEEECCCCCEeEEe-------------------------cchhhhhh-------------------
Confidence            644321  111112233333 3321100                         00000000                   


Q ss_pred             HhhccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcE
Q 010995          161 LHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCV  240 (496)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~  240 (496)
                                       ++...+.+    .-..+.+.|.+.+.       . ++|+++++|++|+.++++|+|++.+|++
T Consensus       117 -----------------~~~~~~~i----~r~~l~~~L~~~~~-------~-~~i~~~~~v~~i~~~~~~v~v~~~~g~~  167 (407)
T 3rp8_A          117 -----------------TGSRPCPV----SRAELQREMLDYWG-------R-DSVQFGKRVTRCEEDADGVTVWFTDGSS  167 (407)
T ss_dssp             -----------------HSSCCEEE----EHHHHHHHHHHHHC-------G-GGEEESCCEEEEEEETTEEEEEETTSCE
T ss_pred             -----------------cCCceEEE----EHHHHHHHHHHhCC-------c-CEEEECCEEEEEEecCCcEEEEEcCCCE
Confidence                             00111111    13456666666653       2 6899999999999999999999999999


Q ss_pred             EEcCEEEEecChHH
Q 010995          241 YEANYVILSASIGV  254 (496)
Q Consensus       241 ~~ad~VI~A~p~~~  254 (496)
                      ++||.||.|.....
T Consensus       168 ~~a~~vV~AdG~~S  181 (407)
T 3rp8_A          168 ASGDLLIAADGSHS  181 (407)
T ss_dssp             EEESEEEECCCTTC
T ss_pred             EeeCEEEECCCcCh
Confidence            99999999987754

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.36  E-value=2.2e-11  Score=125.97  Aligned_cols=157  Identities=18%  Similarity=0.171  Sum_probs=94.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCc
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLR   84 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~   84 (496)
                      ..+||+|||||++||++|+.|+++|+ +|+|||+.+.++..       +     .+.       .-.....++++++|+.
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~G~-~V~VlEr~~~~~~~-------~-----r~~-------~l~~~s~~~l~~lGl~  107 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAGGV-GALVLEKLVEPVGH-------D-----RAG-------ALHIRTVETLDLRGLL  107 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHTTC-CEEEEBSCSSCCCS-------S-----SCC-------CBCHHHHHHHHTTTCH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEcCCCCCCCC-------c-----eEE-------EECHHHHHHHHHcCCh
Confidence            45799999999999999999999999 69999998765310       0     001       1334567888888886


Q ss_pred             cccccCCCcceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHHhhc
Q 010995           85 TCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDF  164 (496)
Q Consensus        85 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (496)
                      .........      ..+..+.                    .......                               
T Consensus       108 ~~l~~~~~~------~~~~~~~--------------------~~~~~~~-------------------------------  130 (570)
T 3fmw_A          108 DRFLEGTQV------AKGLPFA--------------------GIFTQGL-------------------------------  130 (570)
T ss_dssp             HHHTTSCCB------CSBCCBT--------------------TBCTTCC-------------------------------
T ss_pred             HHHHhcCcc------cCCceeC--------------------Ccccccc-------------------------------
Confidence            554221110      0000000                    0000000                               


Q ss_pred             cccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEe--CCC-cEE
Q 010995          165 EMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKT--EDG-CVY  241 (496)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~--~~G-~~~  241 (496)
                      ......        ....+....  .-..+.+.|.+.+.+      .|++|+++++|++|+.++++|+|++  .+| +++
T Consensus       131 ~~~~~~--------~~~~~~~~i--~~~~l~~~L~~~a~~------~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~  194 (570)
T 3fmw_A          131 DFGLVD--------TRHPYTGLV--PQSRTEALLAEHARE------AGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPV  194 (570)
T ss_dssp             BGGGSC--------CSCCSBBCC--CHHHHHHHHHHHHHH------HTEECCBSCEEEECCBCSSCEEEEEEETTEEEEE
T ss_pred             cccccC--------CCCCeeEEe--CHHHHHHHHHHHHHh------CCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEE
Confidence            000000        000000001  133455555555544      6899999999999999998888877  677 689


Q ss_pred             EcCEEEEecChHH
Q 010995          242 EANYVILSASIGV  254 (496)
Q Consensus       242 ~ad~VI~A~p~~~  254 (496)
                      +||+||.|.....
T Consensus       195 ~a~~vV~ADG~~S  207 (570)
T 3fmw_A          195 RARYGVGCDGGRS  207 (570)
T ss_dssp             EESEEEECSCSSC
T ss_pred             EeCEEEEcCCCCc
Confidence            9999999988654

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=99.35  E-value=2e-11  Score=121.62  Aligned_cols=46  Identities=17%  Similarity=0.255  Sum_probs=38.7

Q ss_pred             cccceeeCceeEEEEEcC-CceEEEeCCCcEEEcCEEEEecChHHHh
Q 010995          211 LDNRLKLNKVVRELQHSR-NGVTVKTEDGCVYEANYVILSASIGVLQ  256 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~-~~v~V~~~~G~~~~ad~VI~A~p~~~l~  256 (496)
                      .+.+|+++++|++++..+ ++|+|++.||++++||.||-|-..+...
T Consensus       122 ~~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~v  168 (412)
T 4hb9_A          122 LANTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLVGADGSNSKV  168 (412)
T ss_dssp             CTTTEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECCCTTCHH
T ss_pred             ccceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEEECCCCCcch
Confidence            456899999999998765 4688999999999999999998775443

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.32  E-value=3.4e-11  Score=127.67  Aligned_cols=58  Identities=9%  Similarity=0.013  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      ...++..|.+.+.+      .|++|+++++|++|..++++|.|++.+|.++.||.||+|+....
T Consensus       416 p~~l~~aL~~~a~~------~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s  473 (676)
T 3ps9_A          416 PAELTRNVLELAQQ------QGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQI  473 (676)
T ss_dssp             HHHHHHHHHHHHHH------TTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGG
T ss_pred             HHHHHHHHHHHHHh------CCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcch
Confidence            46778888887776      69999999999999999999999998887899999999998763

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.32  E-value=1.4e-10  Score=120.20  Aligned_cols=61  Identities=34%  Similarity=0.390  Sum_probs=46.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCc
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLR   84 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~   84 (496)
                      +.+||+|||||++||++|+.|+++|+ +|+|+|+.+.+++.+            |.    .    ..+....+++.+|+.
T Consensus        22 ~~~DVvIVGgG~AGl~aA~~Lar~G~-~V~LiEr~~~~~~~~------------G~----~----l~p~~~~~l~~lGl~   80 (591)
T 3i3l_A           22 TRSKVAIIGGGPAGSVAGLTLHKLGH-DVTIYERSAFPRYRV------------GE----S----LLPGTMSILNRLGLQ   80 (591)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCSSCCCC------------CC----B----CCHHHHHHHHHTTCH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHcCCC-CEEEEcCCCCCCCce------------ee----e----ECHHHHHHHHHcCCc
Confidence            45899999999999999999999999 799999986554311            11    1    334567788888885


Q ss_pred             cc
Q 010995           85 TC   86 (496)
Q Consensus        85 ~~   86 (496)
                      ..
T Consensus        81 ~~   82 (591)
T 3i3l_A           81 EK   82 (591)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.30  E-value=7.4e-12  Score=123.58  Aligned_cols=57  Identities=16%  Similarity=0.121  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCCCcEEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      ...+.+.|.+.+.+      .|++|+++++|++|..+++++. |++.+| +++||.||+|+....
T Consensus       148 ~~~l~~~l~~~~~~------~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          148 PFEATTAFAVKAKE------YGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWA  205 (382)
T ss_dssp             HHHHHHHHHHHHHH------TTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHH------CCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhH
Confidence            46677777777766      7999999999999999888888 888877 899999999998754

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.30  E-value=3.7e-11  Score=119.20  Aligned_cols=164  Identities=22%  Similarity=0.267  Sum_probs=100.7

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHh
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASK   80 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~   80 (496)
                      |+..+.+||+|||||++||++|+.|+++|+ +|+|+|+++.++.+.           .|..+. .    ...+..+++++
T Consensus        21 M~~~~~~dV~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~~~~~-----------~g~~~~-~----~~~~~~~~l~~   83 (398)
T 2xdo_A           21 MNLLSDKNVAIIGGGPVGLTMAKLLQQNGI-DVSVYERDNDREARI-----------FGGTLD-L----HKGSGQEAMKK   83 (398)
T ss_dssp             --CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEECSSSTTCCC-----------CSCCEE-C----CTTTHHHHHHH
T ss_pred             ccccCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCCCccccc-----------cCCeee-e----CCccHHHHHHh
Confidence            444567899999999999999999999999 799999988765431           111111 1    11234667778


Q ss_pred             cCCccccccCCC-cceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHH
Q 010995           81 SGLRTCFSDYTN-ARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDF  159 (496)
Q Consensus        81 lgl~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (496)
                      +|+......... ....++..+|..+...                                      ..+          
T Consensus        84 ~gl~~~~~~~~~~~~~~~~~~~g~~~~~~--------------------------------------~~~----------  115 (398)
T 2xdo_A           84 AGLLQTYYDLALPMGVNIADEKGNILSTK--------------------------------------NVK----------  115 (398)
T ss_dssp             TTCHHHHHHHCBCCCEEEECSSSEEEEEC--------------------------------------CCG----------
T ss_pred             cChHHHHHHhhcccceEEECCCCCchhhc--------------------------------------ccc----------
Confidence            887544311100 0002333333321000                                      000          


Q ss_pred             HHhhccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCc
Q 010995          160 ILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGC  239 (496)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~  239 (496)
                                  ..  .... ... +    .-..+.+.|.+.+.        +++|+++++|++|+.++++|+|++.+|+
T Consensus       116 ------------~~--~~~~-~~~-i----~r~~l~~~L~~~~~--------~~~i~~~~~v~~i~~~~~~v~v~~~~g~  167 (398)
T 2xdo_A          116 ------------PE--NRFD-NPE-I----NRNDLRAILLNSLE--------NDTVIWDRKLVMLEPGKKKWTLTFENKP  167 (398)
T ss_dssp             ------------GG--TTSS-CCE-E----CHHHHHHHHHHTSC--------TTSEEESCCEEEEEECSSSEEEEETTSC
T ss_pred             ------------cc--CCCC-Cce-E----CHHHHHHHHHhhcC--------CCEEEECCEEEEEEECCCEEEEEECCCc
Confidence                        00  0000 001 1    13456666666642        4689999999999998888999999998


Q ss_pred             EEEcCEEEEecChHHHhc
Q 010995          240 VYEANYVILSASIGVLQS  257 (496)
Q Consensus       240 ~~~ad~VI~A~p~~~l~~  257 (496)
                      +++||.||.|.......+
T Consensus       168 ~~~ad~vV~AdG~~S~vR  185 (398)
T 2xdo_A          168 SETADLVILANGGMSKVR  185 (398)
T ss_dssp             CEEESEEEECSCTTCSCC
T ss_pred             EEecCEEEECCCcchhHH
Confidence            899999999998865433

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.28  E-value=4.1e-11  Score=127.24  Aligned_cols=58  Identities=9%  Similarity=-0.023  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCc-EEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGC-VYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~-~~~ad~VI~A~p~~~  254 (496)
                      ...+++.|.+.+.+      .|++|+++++|++|..++++|.|.+.+|+ +++||.||+|++...
T Consensus       411 p~~l~~aL~~~a~~------~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~s  469 (689)
T 3pvc_A          411 PSDLTHALMMLAQQ------NGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHRL  469 (689)
T ss_dssp             HHHHHHHHHHHHHH------TTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGGT
T ss_pred             HHHHHHHHHHHHHh------CCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcch
Confidence            46788888887776      69999999999999999888999998887 899999999998863

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.27  E-value=1.6e-11  Score=121.98  Aligned_cols=59  Identities=15%  Similarity=0.173  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHhhccCCCCCcc-ccceeeCceeEEEEEcCCce--EEEeCCCcEEEcCEEEEecChHHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKIL-DNRLKLNKVVRELQHSRNGV--TVKTEDGCVYEANYVILSASIGVL  255 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~-g~~i~~~~~V~~I~~~~~~v--~V~~~~G~~~~ad~VI~A~p~~~l  255 (496)
                      -..+.+.|.+.+.+      . |++|+++++|++|+.++++|  .|++.+|++++||.||.|......
T Consensus       106 r~~l~~~L~~~~~~------~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~~s~  167 (399)
T 2x3n_A          106 CESLRRLVLEKIDG------EATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIASY  167 (399)
T ss_dssp             HHHHHHHHHHHHTT------CTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCCTTCH
T ss_pred             HHHHHHHHHHHhhh------cCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCCCChH
Confidence            34567777777665      4 89999999999999998888  899988889999999999987543

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.27  E-value=1.3e-11  Score=124.30  Aligned_cols=59  Identities=15%  Similarity=0.191  Sum_probs=49.2

Q ss_pred             cHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCc-eEEEeCCCcEEEcCEEEEecChHH
Q 010995          190 GYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNG-VTVKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       190 G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      ....+.+.|.+.+.+      .|++|+++++|++|..++++ +.|++.+|++++||.||+|+....
T Consensus       132 ~~~~l~~~L~~~~~~------~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~VVlAtGg~s  191 (447)
T 2i0z_A          132 KAQSVVDALLTRLKD------LGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKS  191 (447)
T ss_dssp             CHHHHHHHHHHHHHH------TTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             CHHHHHHHHHHHHHH------CCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCEEEECCCCCc
Confidence            356788888888776      79999999999999987777 668888887799999999987543

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.27  E-value=2.3e-11  Score=119.53  Aligned_cols=57  Identities=25%  Similarity=0.268  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      ...+++.|.+.+.+      .|++|+++++|++|+.+++++.|++.+| ++.||.||+|++...
T Consensus       148 ~~~l~~~l~~~~~~------~G~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s  204 (372)
T 2uzz_A          148 SELAIKTWIQLAKE------AGCAQLFNCPVTAIRHDDDGVTIETADG-EYQAKKAIVCAGTWV  204 (372)
T ss_dssp             HHHHHHHHHHHHHH------TTCEEECSCCEEEEEECSSSEEEEESSC-EEEEEEEEECCGGGG
T ss_pred             HHHHHHHHHHHHHH------CCCEEEcCCEEEEEEEcCCEEEEEECCC-eEEcCEEEEcCCccH
Confidence            35677777777766      6999999999999999888888988887 699999999998764

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.27  E-value=7.7e-11  Score=120.82  Aligned_cols=58  Identities=7%  Similarity=0.063  Sum_probs=44.1

Q ss_pred             HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCce---EEEeCCCc--EEEcCEEEEecChHHH
Q 010995          192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGV---TVKTEDGC--VYEANYVILSASIGVL  255 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v---~V~~~~G~--~~~ad~VI~A~p~~~l  255 (496)
                      ..+.+.|.+.+.+      .|++|+++++|++|..+++++   .+.+.+|+  +++||.||.|......
T Consensus       111 ~~l~~~L~~~a~~------~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S~  173 (512)
T 3e1t_A          111 ARFDDMLLRNSER------KGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRTR  173 (512)
T ss_dssp             HHHHHHHHHHHHH------TTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEECCCTTCS
T ss_pred             HHHHHHHHHHHHh------CCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEECCCcchH
Confidence            3455556555554      699999999999999988764   45556674  7999999999988643

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.23  E-value=9e-11  Score=116.00  Aligned_cols=56  Identities=18%  Similarity=0.217  Sum_probs=48.0

Q ss_pred             HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995          192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      ..+++.|.+.+.+      .|++|+++++|++|+.+++++.|++.+| +++||.||+|+....
T Consensus       150 ~~~~~~l~~~~~~------~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~  205 (389)
T 2gf3_A          150 ENCIRAYRELAEA------RGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWN  205 (389)
T ss_dssp             HHHHHHHHHHHHH------TTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHH------CCCEEEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCccH
Confidence            5677788877766      6999999999999999888888888776 899999999998754

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.22  E-value=2e-10  Score=113.84  Aligned_cols=56  Identities=25%  Similarity=0.293  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      ...+.+.|.+.+.+      .|++|+++++|++|..++++|.|.+.+| +++||.||+|+...
T Consensus       152 ~~~~~~~l~~~a~~------~Gv~i~~~~~V~~i~~~~~~v~v~t~~g-~i~a~~VV~A~G~~  207 (397)
T 2oln_A          152 VRGTLAALFTLAQA------AGATLRAGETVTELVPDADGVSVTTDRG-TYRAGKVVLACGPY  207 (397)
T ss_dssp             HHHHHHHHHHHHHH------TTCEEEESCCEEEEEEETTEEEEEESSC-EEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHH------cCCEEECCCEEEEEEEcCCeEEEEECCC-EEEcCEEEEcCCcC
Confidence            35567777776665      6999999999999999888888888776 89999999999864

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.21  E-value=2.1e-11  Score=121.29  Aligned_cols=57  Identities=21%  Similarity=0.176  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCce-EEEeCCCcEEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGV-TVKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      ...+.+.|.+.+.+      .|++|+++++|++|..+++++ .|++.+| ++.||.||+|+....
T Consensus       173 ~~~~~~~l~~~~~~------~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          173 HDHVAWAFARKANE------MGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHS  230 (405)
T ss_dssp             HHHHHHHHHHHHHH------TTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHH------CCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhH
Confidence            34677778777766      699999999999999887764 5888887 799999999998743

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.20  E-value=2e-11  Score=120.79  Aligned_cols=58  Identities=9%  Similarity=0.161  Sum_probs=47.1

Q ss_pred             cHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEc----CCceEEEeCCCcEEEcCEEEEecChHH
Q 010995          190 GYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHS----RNGVTVKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       190 G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~----~~~v~V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      ....+.+.|.+.+.+      .|++|+++++|++|..+    ++++.|++.+| +++||+||+|+....
T Consensus       107 ~~~~l~~~L~~~~~~------~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~ad~VVlAtG~~s  168 (401)
T 2gqf_A          107 GAEQIVEMLKSECDK------YGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCKNLIVATGGLS  168 (401)
T ss_dssp             CTHHHHHHHHHHHHH------HTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EEEESEEEECCCCSS
T ss_pred             CHHHHHHHHHHHHHH------CCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-EEECCEEEECCCCcc
Confidence            356677777777665      69999999999999987    66788888776 899999999996543

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.20  E-value=1.7e-10  Score=113.73  Aligned_cols=55  Identities=15%  Similarity=0.114  Sum_probs=47.6

Q ss_pred             HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      ..+.+.|.+.+.+      .|++|+++++|++|..++++|.|++.+| ++.||.||+|++..
T Consensus       164 ~~~~~~l~~~~~~------~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~  218 (382)
T 1ryi_A          164 YFVCKAYVKAAKM------LGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVW  218 (382)
T ss_dssp             HHHHHHHHHHHHH------TTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHH------CCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChh
Confidence            5677778777766      6999999999999999888888888777 89999999999874

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.20  E-value=6.2e-11  Score=122.48  Aligned_cols=58  Identities=19%  Similarity=0.069  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCC---C--cEEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTED---G--CVYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~---G--~~~~ad~VI~A~p~~~  254 (496)
                      -..+...|++.+.+      .|++|+++++|++|..+++++. |++.+   |  .+++||.||+|+.+..
T Consensus       169 ~~~l~~~L~~~a~~------~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s  232 (561)
T 3da1_A          169 DARLTLEIMKEAVA------RGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV  232 (561)
T ss_dssp             HHHHHHHHHHHHHH------TTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHH------cCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence            46678888877766      7999999999999999888754 65543   3  4789999999998754

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.17  E-value=1.8e-10  Score=113.55  Aligned_cols=150  Identities=17%  Similarity=0.226  Sum_probs=94.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCc
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLR   84 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~   84 (496)
                      +.+||+|||||++||++|+.|+++|+ +|+|+|+++.+++.       +     .+..+.       ....++++++|+.
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~~G~-~v~viE~~~~~~~~-------~-----~~~~l~-------~~~~~~l~~~g~~   69 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQNGW-DVRLHEKSSELRAF-------G-----AGIYLW-------HNGLRVLEGLGAL   69 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSCCCC-------S-----SEEEEE-------HHHHHHHHHTTCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCCCCCC-------C-----ceEEeC-------ccHHHHHHHcCCH
Confidence            35799999999999999999999999 79999998876541       1     111222       3456777888875


Q ss_pred             cccccCCC--cceEEEcCCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHHh
Q 010995           85 TCFSDYTN--ARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILH  162 (496)
Q Consensus        85 ~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (496)
                      ........  ....++.. |..+.                                                        
T Consensus        70 ~~~~~~~~~~~~~~~~~~-g~~~~--------------------------------------------------------   92 (379)
T 3alj_A           70 DDVLQGSHTPPTYETWMH-NKSVS--------------------------------------------------------   92 (379)
T ss_dssp             HHHHTTCBCCSCEEEEET-TEEEE--------------------------------------------------------
T ss_pred             HHHHhhCCCccceEEEeC-Cceee--------------------------------------------------------
Confidence            44321110  01112211 21100                                                        


Q ss_pred             hccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEE
Q 010995          163 DFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYE  242 (496)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~  242 (496)
                                 .+...+. ..+..   .-..+.+.|.+.+.+      .|++|+++++|++|+.  ++ .|++.+|++++
T Consensus        93 -----------~~~~~~~-~~~~~---~r~~l~~~L~~~~~~------~gv~i~~~~~v~~i~~--~~-~v~~~~g~~~~  148 (379)
T 3alj_A           93 -----------KETFNGL-PWRIM---TRSHLHDALVNRARA------LGVDISVNSEAVAADP--VG-RLTLQTGEVLE  148 (379)
T ss_dssp             -----------EECGGGC-CEEEE---EHHHHHHHHHHHHHH------TTCEEESSCCEEEEET--TT-EEEETTSCEEE
T ss_pred             -----------eccCCCC-ceEEE---CHHHHHHHHHHHHHh------cCCEEEeCCEEEEEEe--CC-EEEECCCCEEE
Confidence                       0000000 11111   124455556565554      6899999999999987  34 78888888999


Q ss_pred             cCEEEEecChHHH
Q 010995          243 ANYVILSASIGVL  255 (496)
Q Consensus       243 ad~VI~A~p~~~l  255 (496)
                      ||.||.|......
T Consensus       149 ad~vV~AdG~~s~  161 (379)
T 3alj_A          149 ADLIVGADGVGSK  161 (379)
T ss_dssp             CSEEEECCCTTCH
T ss_pred             cCEEEECCCccHH
Confidence            9999999987543

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.16  E-value=1.1e-10  Score=126.60  Aligned_cols=57  Identities=25%  Similarity=0.204  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCCCcEEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      ...++..|.+.+.+      .|++|+++++|++|..+++++. |.+.+| +++||+||+|+....
T Consensus       150 p~~l~~~L~~~a~~------~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          150 AARAVQLLIKRTES------AGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWG  207 (830)
T ss_dssp             HHHHHHHHHHHHHH------TTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHH------cCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccch
Confidence            45678888887776      7999999999999999888764 888777 899999999998764

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.13  E-value=1.8e-10  Score=117.57  Aligned_cols=58  Identities=17%  Similarity=0.323  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCCCcEEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      ...+.+.|.+.+.+      .|++|+++++|++|..+++++. |++.+|+++.||.||+|+....
T Consensus       219 ~~~l~~~L~~~l~~------~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s  277 (549)
T 3nlc_A          219 LVTMIEKMRATIIE------LGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSA  277 (549)
T ss_dssp             HHHHHHHHHHHHHH------TTCEEESSCCEEEEEESSSBEEEEEETTSCEEECSCEEECCCTTC
T ss_pred             HHHHHHHHHHHHHh------cCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCCh
Confidence            45677788777776      7999999999999999888766 8888998999999999998754

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.13  E-value=4.7e-10  Score=116.16  Aligned_cols=57  Identities=16%  Similarity=0.050  Sum_probs=43.9

Q ss_pred             HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeC---CC--cEEEcCEEEEecChHH
Q 010995          192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTE---DG--CVYEANYVILSASIGV  254 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~---~G--~~~~ad~VI~A~p~~~  254 (496)
                      ..++..+++.+.+      .|++|+++++|++|..+++++. |++.   +|  .++.||.||+|+.+..
T Consensus       188 ~~l~~~l~~~a~~------~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws  250 (571)
T 2rgh_A          188 ARLVIDNIKKAAE------DGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWV  250 (571)
T ss_dssp             HHHHHHHHHHHHH------TTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGH
T ss_pred             HHHHHHHHHHHHH------cCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhH
Confidence            4567777776665      7999999999999999887643 5532   23  3789999999998764

>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=99.13  E-value=6.4e-12  Score=101.41  Aligned_cols=105  Identities=11%  Similarity=0.198  Sum_probs=67.0

Q ss_pred             cEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCCCCceEEeecCCCCcccccee
Q 010995          239 CVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQH  318 (496)
Q Consensus       239 ~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~  318 (496)
                      ++++||+||+|+|+++++.  |.|.|+||..+.++++.++++...|+++.|+++||++..   .       .+    ...
T Consensus         4 ~~~~Ad~VIvTvP~~vL~~--I~F~P~LP~~k~~Ai~~l~~g~~~Kv~l~f~~~FW~~~~---~-------~g----d~s   67 (130)
T 2e1m_B            4 QTWTGDLAIVTIPFSSLRF--VKVTPPFSYKKRRAVIETHYDQATKVLLEFSRRWWEFTE---A-------DW----KRE   67 (130)
T ss_dssp             EEEEESEEEECSCHHHHTT--SEEESCCCHHHHHHHHHCCEECEEEEEEEESSCGGGCCH---H-------HH----HHH
T ss_pred             eEEEcCEEEEcCCHHHHhc--CcCCCCCCHHHHHHHHhCCCcceeEEEEEECCCCCCCCC---c-------cc----ccc
Confidence            4789999999999999986  889999999999999999999999999999999997621   0       00    000


Q ss_pred             ccccCCCCcEEEEEec-cccchhcccCCcHHHHHHHHHHHHHhcC
Q 010995          319 MENAYPGSNILVVTLT-NGESKRVEAQPDEETLKEAMEVLQDMFG  362 (496)
Q Consensus       319 ~~~~~~~~~vl~~~~~-~~~a~~~~~~~~ee~~~~~~~~L~~~~~  362 (496)
                      ..+  ...++++++.. ++.+..|..+++ |.++.++..|.++++
T Consensus        68 ~~~--~~pg~l~~f~~wg~~A~~~~~l~~-~~r~~~~~~l~~~~p  109 (130)
T 2e1m_B           68 LDA--IAPGLYDYYQQWGEDDAEAALALP-QSVRNLPTGLLGAHP  109 (130)
T ss_dssp             HHH--HSTTHHHHHHHHCCCSCCCC--------------------
T ss_pred             CCC--CCCeEEEEecccCHHHHHHhcCCH-HHHHHHHHHHHHhCC
Confidence            111  12236666663 888889988877 557888888999885

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.13  E-value=2e-09  Score=111.69  Aligned_cols=39  Identities=31%  Similarity=0.589  Sum_probs=35.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHC------CCCcEEEEeeCCCCCeE
Q 010995            6 RSPVIIIGAGVSGISAGKILAEN------GIEDILILEASDRIGGR   45 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~------G~~~V~vlEa~~~~GGr   45 (496)
                      .+||+|||||++||+||+.|+++      |+ +|+|+|+.+.+|+.
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~-~V~vlEk~~~~g~~   79 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDL-RVCLVEKAAHIGAH   79 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCC-CEEEECSSSSTTTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCC-cEEEEeCCCCCCCc
Confidence            47999999999999999999999      99 69999999888764

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.13  E-value=1e-10  Score=120.10  Aligned_cols=48  Identities=29%  Similarity=0.459  Sum_probs=40.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHH-HCCCCcEEEEeeCCCCCeEEEeeeeCCc
Q 010995            6 RSPVIIIGAGVSGISAGKILA-ENGIEDILILEASDRIGGRVRNEKFGGV   54 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~-~~G~~~V~vlEa~~~~GGr~~t~~~~g~   54 (496)
                      .+||+|||||++||+||+.|+ +.|+ +|+|+|+++.+||.....+.+|.
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G~-~v~viE~~~~~GGtw~~~~ypg~   56 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELGL-TTVGFDKADGPGGTWYWNRYPGA   56 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC-CEEEEESSSSSCTHHHHCCCTTC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCC-CEEEEECCCCCCCcccccCCCCc
Confidence            479999999999999999999 9999 79999999999985543333443

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=99.12  E-value=2.4e-10  Score=113.83  Aligned_cols=62  Identities=31%  Similarity=0.477  Sum_probs=46.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCc-EEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIED-ILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGL   83 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~-V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl   83 (496)
                      ..+||+|||||++||++|..|+++|+ + |+|+|+++.++..             |.. +.     -.+...++++++|+
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~~G~-~~v~v~E~~~~~~~~-------------g~g-~~-----l~~~~~~~l~~lg~   62 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQAGI-GKVTLLESSSEIRPL-------------GVG-IN-----IQPAAVEALAELGL   62 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESSSSCCCC-------------SCE-EE-----ECHHHHHHHHHTTC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCC-CeEEEEECCCCcccc-------------eeE-EE-----EChHHHHHHHHCCC
Confidence            36899999999999999999999999 8 9999998776421             111 11     13356778888887


Q ss_pred             ccc
Q 010995           84 RTC   86 (496)
Q Consensus        84 ~~~   86 (496)
                      ...
T Consensus        63 ~~~   65 (410)
T 3c96_A           63 GPA   65 (410)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            543

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.11  E-value=9.4e-11  Score=120.65  Aligned_cols=41  Identities=27%  Similarity=0.518  Sum_probs=37.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      .+||+|||||++||+||+.|++.|+ +|+|+|+++.+||...
T Consensus        21 ~~dVvIIGaG~aGl~aA~~L~~~G~-~v~iiE~~~~~GGtw~   61 (549)
T 4ap3_A           21 SYDVVVVGAGIAGLYAIHRFRSQGL-TVRAFEAASGVGGVWY   61 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCTHHH
T ss_pred             CCCEEEECchHHHHHHHHHHHhCCC-CEEEEeCCCCCCCccc
Confidence            4699999999999999999999999 7999999999998443

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.10  E-value=9.5e-10  Score=112.58  Aligned_cols=40  Identities=33%  Similarity=0.605  Sum_probs=37.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR   45 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr   45 (496)
                      ..+||||||||++||+||+.|+++|. +|+|||+.+.+||.
T Consensus        40 ~~~DVvVVGaG~AGl~AA~~aa~~G~-~V~vlEk~~~~GG~   79 (510)
T 4at0_A           40 YEADVVVAGYGIAGVAASIEAARAGA-DVLVLERTSGWGGA   79 (510)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCTT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCCCCCCc
Confidence            35799999999999999999999999 69999999999884

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.10  E-value=1.3e-09  Score=113.21  Aligned_cols=40  Identities=28%  Similarity=0.594  Sum_probs=37.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR   45 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr   45 (496)
                      ..+||+|||||++||+||+.|+++|. +|+|||+.+.+||.
T Consensus       125 ~~~DVvVVGaG~aGl~aA~~la~~G~-~V~vlEk~~~~gg~  164 (571)
T 1y0p_A          125 DTVDVVVVGSGGAGFSAAISATDSGA-KVILIEKEPVIGGN  164 (571)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCCCCCCc
Confidence            35899999999999999999999999 69999999998874

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.10  E-value=1.4e-10  Score=119.55  Aligned_cols=41  Identities=32%  Similarity=0.511  Sum_probs=37.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      ..+||+|||||++||+||+.|+++|+ +|+|+|+++.+||..
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~-~v~iiE~~~~~GG~w   55 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGR-SVHVIETAGDVGGVW   55 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCTHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCC-CEEEEeCCCCCCCcc
Confidence            35799999999999999999999999 699999999999843

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=99.10  E-value=2.7e-10  Score=117.67  Aligned_cols=67  Identities=24%  Similarity=0.323  Sum_probs=49.0

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHh
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASK   80 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~   80 (496)
                      |+....+||+|||||++||++|..|+++|+ +|+|+|+.+.++...+            +..       ......+++++
T Consensus        21 M~~~~~~dVlIVGaGpaGl~~A~~La~~G~-~V~vlEr~~~~~~~~~------------~~~-------l~~~~~~~l~~   80 (549)
T 2r0c_A           21 MNAPIETDVLILGGGPVGMALALDLAHRQV-GHLVVEQTDGTITHPR------------VGT-------IGPRSMELFRR   80 (549)
T ss_dssp             -CCCEEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSCSCCSSCC------------CCE-------ECHHHHHHHHH
T ss_pred             cCCCCCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCCCCCCCc------------eee-------eCHHHHHHHHH
Confidence            443445799999999999999999999999 6999999886643111            111       22356788888


Q ss_pred             cCCcccc
Q 010995           81 SGLRTCF   87 (496)
Q Consensus        81 lgl~~~~   87 (496)
                      +|+....
T Consensus        81 lGl~~~~   87 (549)
T 2r0c_A           81 WGVAKQI   87 (549)
T ss_dssp             TTCHHHH
T ss_pred             cCChHHH
Confidence            8886544

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.08  E-value=1.2e-09  Score=113.41  Aligned_cols=40  Identities=23%  Similarity=0.557  Sum_probs=36.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR   45 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr   45 (496)
                      ..+||+|||||++||+||+.|+++|. +|+|||+.+.+||.
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~~G~-~V~vlEk~~~~gg~  159 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKKAGA-NVILVDKAPFSGGN  159 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTC-CEEEECSSSSSCTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCCCCCCc
Confidence            45799999999999999999999999 69999999988873

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.06  E-value=1.6e-10  Score=116.49  Aligned_cols=57  Identities=7%  Similarity=0.042  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEE---------------cCCce-EEEeCCCcEE--EcCEEEEecCh
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQH---------------SRNGV-TVKTEDGCVY--EANYVILSASI  252 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~---------------~~~~v-~V~~~~G~~~--~ad~VI~A~p~  252 (496)
                      ...+.+.|.+.+.+      .|++|+++++|++|..               +++++ .|.+.+| ++  .||.||+|+..
T Consensus       180 ~~~l~~~L~~~~~~------~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~  252 (448)
T 3axb_A          180 AEKVVDYYYRRASG------AGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGV  252 (448)
T ss_dssp             HHHHHHHHHHHHHH------TTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGG
T ss_pred             HHHHHHHHHHHHHh------CCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCc
Confidence            45678888887776      6999999999999998               56665 5888887 78  99999999987


Q ss_pred             HH
Q 010995          253 GV  254 (496)
Q Consensus       253 ~~  254 (496)
                      ..
T Consensus       253 ~s  254 (448)
T 3axb_A          253 WS  254 (448)
T ss_dssp             GH
T ss_pred             CH
Confidence            53

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.05  E-value=3.1e-10  Score=106.93  Aligned_cols=39  Identities=33%  Similarity=0.646  Sum_probs=35.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-CCCcEEEEeeCCCCCe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAEN-GIEDILILEASDRIGG   44 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~-G~~~V~vlEa~~~~GG   44 (496)
                      .++||+|||||++||+||+.|+++ |. +|+|+|+++.+||
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~-~V~viEk~~~~gg   77 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNV-QVAIIEQSVSPGG   77 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTS-CEEEEESSSSCCT
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCC-eEEEEECCCCCCC
Confidence            357999999999999999999997 99 6999999998876

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.05  E-value=5e-10  Score=112.82  Aligned_cols=45  Identities=29%  Similarity=0.404  Sum_probs=38.9

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCC--CcEEEEeeCCCCCeEE
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGI--EDILILEASDRIGGRV   46 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~--~~V~vlEa~~~~GGr~   46 (496)
                      |.....+||+|||||++||+||+.|++.|.  + |+|+|+++.+||..
T Consensus         1 M~~~~~~dV~IIGaG~aGl~aA~~L~~~G~~~~-V~v~E~~~~~GG~~   47 (447)
T 2gv8_A            1 MCLPTIRKIAIIGAGPSGLVTAKALLAEKAFDQ-VTLFERRGSPGGVW   47 (447)
T ss_dssp             --CCSCCEEEEECCSHHHHHHHHHHHTTTCCSE-EEEECSSSSSSTTC
T ss_pred             CCCCCCCEEEEECccHHHHHHHHHHHhcCCCCC-eEEEecCCCCCCee
Confidence            555567899999999999999999999998  6 99999999999843

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=99.04  E-value=3.9e-10  Score=111.67  Aligned_cols=58  Identities=10%  Similarity=0.072  Sum_probs=44.6

Q ss_pred             HHHHHHHHhhccCCCCCccccceeeCceeEEEEEcC-CceEEEe-CCCc--EEEcCEEEEecChHHHh
Q 010995          193 HLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSR-NGVTVKT-EDGC--VYEANYVILSASIGVLQ  256 (496)
Q Consensus       193 ~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~-~~v~V~~-~~G~--~~~ad~VI~A~p~~~l~  256 (496)
                      .+.+.|.+.+.+      .|++|+++++|++|+.++ +++.|++ .+|+  +++||.||.|.......
T Consensus       104 ~l~~~L~~~~~~------~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~~S~v  165 (394)
T 1k0i_A          104 EVTRDLMEAREA------CGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGIS  165 (394)
T ss_dssp             HHHHHHHHHHHH------TTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTCST
T ss_pred             HHHHHHHHHHHh------cCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCCCCcHH
Confidence            455556665554      589999999999999864 5677776 6886  69999999999876543

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.04  E-value=4.3e-10  Score=108.71  Aligned_cols=43  Identities=26%  Similarity=0.415  Sum_probs=38.2

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .+.+++++++|++|+.+++.+.|.+.+|.++.+|+||+|+...
T Consensus        78 ~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~  120 (335)
T 2zbw_A           78 FNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVG  120 (335)
T ss_dssp             GCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTS
T ss_pred             cCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCC
Confidence            5778999999999998877888988888889999999999874

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.03  E-value=2.9e-10  Score=110.70  Aligned_cols=43  Identities=14%  Similarity=0.031  Sum_probs=39.0

Q ss_pred             cccceeeCceeEEEEEcCCceE-EEeCCCcEEEcCEEEEecChHH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVT-VKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      .|++++++++|++|+.+++++. |++.+| ++.||+||+|+....
T Consensus        89 ~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~  132 (357)
T 4a9w_A           89 YALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWG  132 (357)
T ss_dssp             TTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGG
T ss_pred             cCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCC
Confidence            6889999999999999999999 999887 899999999998644

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.02  E-value=1.4e-10  Score=119.19  Aligned_cols=41  Identities=32%  Similarity=0.631  Sum_probs=37.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      ..+||+|||||++||+||+.|++.|+ +|+|+|+++.+||..
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~g~-~v~iiE~~~~~GGtw   48 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQAGM-KVLGIEAGEDVGGTW   48 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCTHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCC-CEEEEeCCCCCCCcc
Confidence            45799999999999999999999999 699999999999853

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.02  E-value=3.1e-09  Score=108.13  Aligned_cols=55  Identities=16%  Similarity=0.176  Sum_probs=45.3

Q ss_pred             HHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          193 HLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       193 ~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .+.+.+.+.+.+      .|++|+++++|++|+.+++++.|.+.+|+++.||.||+|++..
T Consensus       233 ~~~~~l~~~l~~------~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~  287 (484)
T 3o0h_A          233 DLRQLLNDAMVA------KGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRV  287 (484)
T ss_dssp             HHHHHHHHHHHH------HTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEE
T ss_pred             HHHHHHHHHHHH------CCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCC
Confidence            344555555544      6999999999999999888889999999899999999999753

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.02  E-value=1.9e-10  Score=110.92  Aligned_cols=40  Identities=23%  Similarity=0.355  Sum_probs=36.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR   45 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr   45 (496)
                      .++||+|||||++||+||+.|+++|+ +|+|+|+++.+||.
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~~gG~   45 (332)
T 3lzw_A            6 KVYDITIIGGGPVGLFTAFYGGMRQA-SVKIIESLPQLGGQ   45 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCC-CEEEEEcCCCCCce
Confidence            45799999999999999999999999 69999999988874

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.00  E-value=1.3e-09  Score=104.55  Aligned_cols=42  Identities=21%  Similarity=0.361  Sum_probs=36.1

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .|+++++ ++|++|..+++.+.|.+.+|.++.+|+||+|+...
T Consensus        83 ~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~  124 (323)
T 3f8d_A           83 YEVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVK  124 (323)
T ss_dssp             TTCCEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCE
T ss_pred             cCCEEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCC
Confidence            5788999 99999999988899999888899999999999765

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.00  E-value=1.3e-09  Score=110.89  Aligned_cols=39  Identities=23%  Similarity=0.439  Sum_probs=36.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      ..+||+|||||++||++|..|+++|+ +|+|+|+++.+|+
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~-~V~liEk~~~~g~  129 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGA-RVVLVEKRIKFSR  129 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCSSCCC
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCC-eEEEEEeccccCC
Confidence            46899999999999999999999999 7999999988764

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.99  E-value=1.3e-09  Score=109.87  Aligned_cols=58  Identities=5%  Similarity=-0.181  Sum_probs=43.8

Q ss_pred             HHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeC---CCc--EEEcCEEEEecChHHHh
Q 010995          193 HLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTE---DGC--VYEANYVILSASIGVLQ  256 (496)
Q Consensus       193 ~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~---~G~--~~~ad~VI~A~p~~~l~  256 (496)
                      .+.+.|.+.+.+      .|++|+++++|++|..+++++. |++.   +|+  +++||.||.|.+.....
T Consensus       101 ~l~~~L~~~a~~------~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~v  164 (453)
T 3atr_A          101 LYNQRVLKEAQD------RGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSF  164 (453)
T ss_dssp             HHHHHHHHHHHH------TTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGCTT
T ss_pred             HHHHHHHHHHHH------cCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCchhh
Confidence            455555555554      6899999999999999888765 5443   665  78999999999876543

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.98  E-value=9.8e-10  Score=107.35  Aligned_cols=43  Identities=23%  Similarity=0.449  Sum_probs=37.7

Q ss_pred             cccceeeCceeEEEEEcCC-ceEEEeCCCcEEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRN-GVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~-~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .|++++++++|++|..+++ .+.|++.+|+++.+|+||+|+...
T Consensus        87 ~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~  130 (360)
T 3ab1_A           87 YNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLG  130 (360)
T ss_dssp             TCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTC
T ss_pred             hCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCC
Confidence            5788999999999998765 688999888889999999999864

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.96  E-value=4.9e-09  Score=107.00  Aligned_cols=58  Identities=12%  Similarity=0.078  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEe---CCCc--EEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKT---EDGC--VYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~---~~G~--~~~ad~VI~A~p~~~  254 (496)
                      -..++..|.+.+.+      .|++|+++++|++|..+++.+.|++   .+|+  +++||.||+|+.+..
T Consensus       148 ~~~l~~~l~~~a~~------~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s  210 (501)
T 2qcu_A          148 DARLVLANAQMVVR------KGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWV  210 (501)
T ss_dssp             HHHHHHHHHHHHHH------TTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGGH
T ss_pred             HHHHHHHHHHHHHH------cCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChhH
Confidence            45678888887776      6999999999999998876566766   3565  789999999998764

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=98.96  E-value=2.8e-08  Score=104.65  Aligned_cols=62  Identities=24%  Similarity=0.355  Sum_probs=46.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHH-----CCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHh
Q 010995            6 RSPVIIIGAGVSGISAGKILAE-----NGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASK   80 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~-----~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~   80 (496)
                      .+||+|||||++||++|..|++     .|+ +|+|+|+++.+..       .+     -+..+       .....+++++
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi-~v~viE~~~~~~~-------~g-----ra~~l-------~~~tle~l~~   67 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDL-KVRIIDKRSTKVY-------NG-----QADGL-------QCRTLESLKN   67 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTC-CEEEECSSSSCCC-------SC-----SCCEE-------CHHHHHHHHT
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCC-CEEEEeCCCCCCC-------CC-----ceeEE-------ChHHHHHHHH
Confidence            5799999999999999999999     999 6999999764320       00     01122       3457889999


Q ss_pred             cCCcccc
Q 010995           81 SGLRTCF   87 (496)
Q Consensus        81 lgl~~~~   87 (496)
                      +|+....
T Consensus        68 lGl~~~l   74 (665)
T 1pn0_A           68 LGLADKI   74 (665)
T ss_dssp             TTCHHHH
T ss_pred             CCCHHHH
Confidence            9987554

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.92  E-value=2.1e-08  Score=103.90  Aligned_cols=39  Identities=31%  Similarity=0.581  Sum_probs=36.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR   45 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr   45 (496)
                      .+||+|||||++||+||+.|+++|. +|+|+|+.+.+||.
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~g~-~v~~~e~~~~~~~~  164 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDAGA-KVILLEKEPIPGGN  164 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSSSC-CEEEECSSSSSCTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCcc
Confidence            5799999999999999999999999 69999999999874

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.92  E-value=1.4e-08  Score=104.76  Aligned_cols=57  Identities=14%  Similarity=0.119  Sum_probs=44.2

Q ss_pred             HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCc--eEEEeCCCcEEEcCEEEEecChHHH
Q 010995          192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNG--VTVKTEDGCVYEANYVILSASIGVL  255 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~--v~V~~~~G~~~~ad~VI~A~p~~~l  255 (496)
                      ..+.+.|.+.+.+      .|++++.+ +|++|..++++  +.|++.+|++++||.||.|.+....
T Consensus       165 ~~l~~~L~~~a~~------~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~  223 (538)
T 2aqj_A          165 HLVADFLKRWAVE------RGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGL  223 (538)
T ss_dssp             HHHHHHHHHHHHH------TTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCC
T ss_pred             HHHHHHHHHHHHH------CCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchh
Confidence            4555666665554      68999999 89999986554  4688888888999999999987654

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.89  E-value=3.6e-09  Score=100.77  Aligned_cols=38  Identities=37%  Similarity=0.626  Sum_probs=35.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeCCCCCe
Q 010995            6 RSPVIIIGAGVSGISAGKILAEN--GIEDILILEASDRIGG   44 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~~~~GG   44 (496)
                      .+||+|||||++||+||+.|+++  |. +|+|+|+.+.+||
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~-~V~LiEk~~~~GG  118 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDL-RITIVEAGVAPGG  118 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTS-CEEEEESSSSCCT
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCC-EEEEEeCCCccCC
Confidence            58999999999999999999997  99 6999999988876

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.88  E-value=3.2e-09  Score=102.49  Aligned_cols=41  Identities=17%  Similarity=0.218  Sum_probs=35.9

Q ss_pred             cccceeeCceeEEEEEcCCceEEEe---CCCcEEEcCEEEEecCh
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKT---EDGCVYEANYVILSASI  252 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~---~~G~~~~ad~VI~A~p~  252 (496)
                      .|+++++++ |++|..+++.+.+.+   .++.++.+|+||+|+..
T Consensus        97 ~gv~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~  140 (338)
T 3itj_A           97 FGTEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGA  140 (338)
T ss_dssp             TTCEEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCE
T ss_pred             cCCEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCC
Confidence            588999999 999999888898887   36678999999999976

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.88  E-value=1.8e-08  Score=104.07  Aligned_cols=57  Identities=19%  Similarity=0.183  Sum_probs=44.4

Q ss_pred             HHHHHHHHHhhccCCCCCcc-ccceeeCceeEEEEEcCCc--eEEEeCCCcEEEcCEEEEecChHHH
Q 010995          192 AHLLYKMAEEFLSTSDGKIL-DNRLKLNKVVRELQHSRNG--VTVKTEDGCVYEANYVILSASIGVL  255 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~-g~~i~~~~~V~~I~~~~~~--v~V~~~~G~~~~ad~VI~A~p~~~l  255 (496)
                      ..+.+.|.+.+.+      . |++++++ +|++|..++++  +.|++.+|++++||.||.|++....
T Consensus       194 ~~l~~~L~~~~~~------~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~  253 (550)
T 2e4g_A          194 HLVADFLRRFATE------KLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGL  253 (550)
T ss_dssp             HHHHHHHHHHHHH------HSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCC
T ss_pred             HHHHHHHHHHHHh------cCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchh
Confidence            3455666666554      5 9999999 99999986554  5688888888999999999987654

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.87  E-value=2.9e-09  Score=111.85  Aligned_cols=63  Identities=24%  Similarity=0.285  Sum_probs=46.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHH-CCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAE-NGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGL   83 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~-~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl   83 (496)
                      ..+||+|||||++||++|..|++ +|+ +|+|+|+.+.++..       +     -+..+       .....++++++|+
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~-~V~viEr~~~~~~~-------g-----~a~~l-------~~~t~e~l~~lGl   90 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDI-RTCIVEQKEGPMEL-------G-----QADGI-------ACRTMEMFEAFEF   90 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTS-CEEEECSSSSCCSS-------C-----SCCEE-------CHHHHHHHHHTTC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCC-CEEEEeCCCCCCCC-------C-----ceeee-------CHHHHHHHHHcCc
Confidence            35799999999999999999999 999 69999998755320       0     01122       3356788888888


Q ss_pred             cccc
Q 010995           84 RTCF   87 (496)
Q Consensus        84 ~~~~   87 (496)
                      ....
T Consensus        91 ~~~~   94 (639)
T 2dkh_A           91 ADSI   94 (639)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.86  E-value=2.4e-08  Score=102.30  Aligned_cols=57  Identities=12%  Similarity=0.123  Sum_probs=44.5

Q ss_pred             HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCc--eEEEeCCCcEEEcCEEEEecChHHH
Q 010995          192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNG--VTVKTEDGCVYEANYVILSASIGVL  255 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~--v~V~~~~G~~~~ad~VI~A~p~~~l  255 (496)
                      ..+.+.|.+.+.+      .|++++++ +|++|..++++  +.|++.+|++++||.||.|.+....
T Consensus       173 ~~l~~~L~~~a~~------~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~  231 (511)
T 2weu_A          173 DEVARYLSEYAIA------RGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGL  231 (511)
T ss_dssp             HHHHHHHHHHHHH------TTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCC
T ss_pred             HHHHHHHHHHHHH------CCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchH
Confidence            3455566665554      68999999 99999986554  5688888888999999999988643

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.86  E-value=5.6e-09  Score=104.01  Aligned_cols=55  Identities=22%  Similarity=0.237  Sum_probs=44.1

Q ss_pred             HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCce-EEEeCCCcEEEcCEEEEecCh
Q 010995          192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGV-TVKTEDGCVYEANYVILSASI  252 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VI~A~p~  252 (496)
                      ..+.+.+.+.+++      .|++|+++++|++|..+++++ .|.+.+|+++.||.||+|++.
T Consensus       194 ~~~~~~l~~~l~~------~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~  249 (415)
T 3lxd_A          194 EALSEFYQAEHRA------HGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGI  249 (415)
T ss_dssp             HHHHHHHHHHHHH------TTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCC
T ss_pred             HHHHHHHHHHHHh------CCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCC
Confidence            3444445555544      799999999999999887777 488889999999999999874

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.86  E-value=2.7e-08  Score=104.13  Aligned_cols=57  Identities=19%  Similarity=0.169  Sum_probs=43.9

Q ss_pred             HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EE---eCCCc--EEEcCEEEEecChHH
Q 010995          192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VK---TEDGC--VYEANYVILSASIGV  254 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~---~~~G~--~~~ad~VI~A~p~~~  254 (496)
                      ..++..|.+.+.+      .|++|+++++|++|..+++++. |.   +.+|+  .+.||.||+|+....
T Consensus       158 ~~l~~~L~~~a~~------~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~  220 (660)
T 2bs2_A          158 HTMLFAVANECLK------LGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYG  220 (660)
T ss_dssp             HHHHHHHHHHHHH------HTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCG
T ss_pred             HHHHHHHHHHHHh------CCCEEEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCcch
Confidence            4688888887766      6999999999999988776543 32   25665  489999999997643

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.85  E-value=1.2e-08  Score=104.62  Aligned_cols=56  Identities=16%  Similarity=0.133  Sum_probs=43.4

Q ss_pred             HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCCCcEEEcCEEEEecChH
Q 010995          192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      ..+.+.|.+.+.+.     .|++| ++++|++|..+++++. |.+.+|.++.||.||+|+...
T Consensus       123 ~~~~~~L~~~Le~~-----~GVeI-~~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~  179 (637)
T 2zxi_A          123 KRYREYMKKVCENQ-----ENLYI-KQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTF  179 (637)
T ss_dssp             HHHHHHHHHHHHTC-----TTEEE-EESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTC
T ss_pred             HHHHHHHHHHHHhC-----CCCEE-EEeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCC
Confidence            34555565555542     47888 6889999998888875 888889899999999999864

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.85  E-value=2.1e-08  Score=101.40  Aligned_cols=54  Identities=11%  Similarity=0.155  Sum_probs=43.0

Q ss_pred             HHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCc-eEEE-eCCCcEEEcCEEEEecChH
Q 010995          193 HLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNG-VTVK-TEDGCVYEANYVILSASIG  253 (496)
Q Consensus       193 ~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v~V~-~~~G~~~~ad~VI~A~p~~  253 (496)
                      .+.+.+.+.+.+      .|++|+++++|++|+.++++ +.|. +.+|+ +.+|.||+|++..
T Consensus       212 ~~~~~l~~~l~~------~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~  267 (463)
T 4dna_A          212 DMRRGLHAAMEE------KGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRM  267 (463)
T ss_dssp             HHHHHHHHHHHH------TTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEE
T ss_pred             HHHHHHHHHHHH------CCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcc
Confidence            445555555555      69999999999999987665 6788 88886 9999999999753

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.83  E-value=1.9e-08  Score=95.67  Aligned_cols=40  Identities=20%  Similarity=0.347  Sum_probs=33.5

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            3 STSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         3 ~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      .++.+||+|||||+|||+||.+|+++|+ +|+|+|+.. +||
T Consensus         3 ~M~~yDVvIIGaGpAGlsAA~~lar~g~-~v~lie~~~-~gg   42 (304)
T 4fk1_A            3 AMKYIDCAVIGAGPAGLNASLVLGRARK-QIALFDNNT-NRN   42 (304)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSC-CGG
T ss_pred             CCCCcCEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC-CCC
Confidence            3467899999999999999999999999 699999863 454

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.83  E-value=8e-09  Score=102.56  Aligned_cols=57  Identities=19%  Similarity=0.141  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeE---------EEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVR---------ELQHSRNGVTVKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~---------~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      ...+.+.|.+.+.+      .|++|+++++|+         +|..+++++.|.+.+| ++.||.||+|+....
T Consensus       171 ~~~l~~~L~~~~~~------~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~~g-~i~a~~VV~A~G~~s  236 (405)
T 3c4n_A          171 PGSLALLAAQQAIG------QGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETR-QIRAGVIIVAAGAAG  236 (405)
T ss_dssp             HHHHHHHHHHHHHT------TTCEEECSCEEEEETTEEEEECBCC-------CBCCE-EEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHH------CCCEEEcCCEEEeccccccccceEeeCCeEEEEECCc-EEECCEEEECCCccH
Confidence            45678888887776      699999999999         8888777787877776 899999999998753

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.83  E-value=2.3e-08  Score=103.66  Aligned_cols=39  Identities=21%  Similarity=0.310  Sum_probs=35.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      ..+||+|||||++||+||+.|+++|. +|+|||+.+..||
T Consensus         6 ~~~DVvVVGaG~AGl~AA~~la~~G~-~V~vlEK~~~~~g   44 (588)
T 2wdq_A            6 REFDAVVIGAGGAGMRAALQISQSGQ-TCALLSKVFPTRS   44 (588)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCGGGS
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCCCC
Confidence            35799999999999999999999999 6999999887755

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.83  E-value=1.7e-08  Score=91.92  Aligned_cols=41  Identities=22%  Similarity=0.109  Sum_probs=34.9

Q ss_pred             ccceeeCceeEEEEEcCCce-EEEeCCCcEEEcCEEEEecChH
Q 010995          212 DNRLKLNKVVRELQHSRNGV-TVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       212 g~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      |++++ +++|++|..+++++ .|.+.+|++++||.||+|+...
T Consensus        83 gv~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~  124 (232)
T 2cul_A           83 PLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF  124 (232)
T ss_dssp             TEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred             CcEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCC
Confidence            78888 67999999888776 4888888889999999999773

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.82  E-value=3.9e-08  Score=100.18  Aligned_cols=41  Identities=24%  Similarity=0.447  Sum_probs=37.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      .++||+|||||++||+||+.|++.|+ +|+|+|+++.+||.+
T Consensus        24 ~~~dVvVIGgG~aGl~aA~~la~~G~-~V~liEk~~~~GG~~   64 (491)
T 3urh_A           24 MAYDLIVIGSGPGGYVCAIKAAQLGM-KVAVVEKRSTYGGTC   64 (491)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSSSSHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCcc
Confidence            45899999999999999999999999 699999999999964

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.82  E-value=1.1e-08  Score=96.82  Aligned_cols=38  Identities=47%  Similarity=0.722  Sum_probs=35.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeCCCCCe
Q 010995            6 RSPVIIIGAGVSGISAGKILAEN--GIEDILILEASDRIGG   44 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~~~~GG   44 (496)
                      .+||+|||||++||+||+.|+++  |. +|+|+|+.+.+||
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~-~V~v~e~~~~~gg  104 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDL-KVCIIESSVAPGG  104 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTS-CEEEECSSSSCCT
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCccccc
Confidence            46999999999999999999998  99 6999999998876

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.81  E-value=4.9e-09  Score=107.97  Aligned_cols=56  Identities=14%  Similarity=0.155  Sum_probs=42.6

Q ss_pred             HHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCce-EEEeCCCcEEEcCEEEEecChHH
Q 010995          193 HLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGV-TVKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       193 ~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      .+.+.|.+.+.+.     .|++| ++++|+.|..++++| .|.+.+|.++.||.||+|+....
T Consensus       125 ~~~~~L~e~Le~~-----~GV~I-~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s  181 (651)
T 3ces_A          125 LYRQAVRTALENQ-----PNLMI-FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFL  181 (651)
T ss_dssp             HHHHHHHHHHHTC-----TTEEE-EECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTT
T ss_pred             HHHHHHHHHHHhC-----CCCEE-EEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCc
Confidence            4455555555432     47888 678999999888876 48888888899999999998753

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.80  E-value=2e-08  Score=98.20  Aligned_cols=42  Identities=19%  Similarity=0.261  Sum_probs=37.4

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .|++++++++|++|..+++++.|.+.+| ++.||+||+|+...
T Consensus       101 ~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~  142 (369)
T 3d1c_A          101 YELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDY  142 (369)
T ss_dssp             TTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCST
T ss_pred             cCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCC
Confidence            6889999999999999888888988877 68999999999864

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.80  E-value=6.8e-08  Score=97.97  Aligned_cols=55  Identities=15%  Similarity=0.080  Sum_probs=42.6

Q ss_pred             HHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCC---cEEEcCEEEEecChH
Q 010995          193 HLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDG---CVYEANYVILSASIG  253 (496)
Q Consensus       193 ~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VI~A~p~~  253 (496)
                      .+.+.+.+.+.+      .|++++++++|++|+.+++++.|.+.++   +++.+|.||+|++..
T Consensus       222 ~~~~~l~~~l~~------~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~  279 (476)
T 3lad_A          222 QVAKEAQKILTK------QGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRR  279 (476)
T ss_dssp             HHHHHHHHHHHH------TTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHHh------CCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCc
Confidence            344555555544      6999999999999999888877776554   578999999999754

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.79  E-value=9.9e-08  Score=99.18  Aligned_cols=58  Identities=17%  Similarity=0.139  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEe---CCCc--EEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKT---EDGC--VYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~---~~G~--~~~ad~VI~A~p~~~  254 (496)
                      -..++..|.+.+.+      .|++|+++++|++|..+++++. |..   .+|+  .+.||.||+|+....
T Consensus       154 G~~l~~~L~~~~~~------~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~  217 (621)
T 2h88_A          154 GHSLLHTLYGRSLR------YDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYG  217 (621)
T ss_dssp             HHHHHHHHHHHHTT------SCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred             HHHHHHHHHHHHHh------CCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence            35788888888776      7999999999999998777654 333   4664  689999999997644

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.79  E-value=3.4e-08  Score=93.31  Aligned_cols=41  Identities=17%  Similarity=0.133  Sum_probs=34.7

Q ss_pred             ccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          212 DNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       212 g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      ++++. +++|++|+.+++++.|++.+|+++.+|+||+|+...
T Consensus        71 ~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~  111 (297)
T 3fbs_A           71 TIHWV-EGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVT  111 (297)
T ss_dssp             TEEEE-ESCEEEEEEETTEEEEEETTSCEEEEEEEEECCCCE
T ss_pred             CeEEE-EeEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCC
Confidence            44554 569999999888899999999889999999999874

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.79  E-value=4.3e-08  Score=85.42  Aligned_cols=41  Identities=22%  Similarity=0.330  Sum_probs=36.5

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .|++++++ +|++|+.+++++.|++.+| ++++|.||+|+...
T Consensus        69 ~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~  109 (180)
T 2ywl_A           69 YGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKD  109 (180)
T ss_dssp             TTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTC
T ss_pred             cCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCC
Confidence            68999999 9999999888888998888 89999999999753

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.78  E-value=4.3e-08  Score=99.24  Aligned_cols=41  Identities=27%  Similarity=0.411  Sum_probs=37.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      ++||+|||||++|++||+.|++.|+ +|+|+|+++.+||.+.
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~-~V~lie~~~~~GG~~~   42 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGM-KTACVEKRGALGGTCL   42 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSSSSHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCcCCcCC
Confidence            5799999999999999999999999 6999999999998643

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.77  E-value=6.9e-09  Score=104.97  Aligned_cols=37  Identities=24%  Similarity=0.372  Sum_probs=34.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCC-----CCcEEEEeeCCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENG-----IEDILILEASDRIG   43 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G-----~~~V~vlEa~~~~G   43 (496)
                      .+||+|||||++||+||..|++.|     . +|+|+|+++.+|
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~-~v~liE~~~~~g   71 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQERAQAQGAL-EVLFLDKQGDYR   71 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHHHHHCCC-CEEEEESCSSCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcccccCcc-cEEEEecCCCCC
Confidence            459999999999999999999999     8 699999999887

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.77  E-value=2.1e-08  Score=96.33  Aligned_cols=38  Identities=34%  Similarity=0.550  Sum_probs=34.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR   45 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr   45 (496)
                      ++||+|||||++||+||+.|+++|+ +|+|+|++ .+||.
T Consensus         8 ~~dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~-~~gg~   45 (325)
T 2q7v_A            8 DYDVVIIGGGPAGLTAAIYTGRAQL-STLILEKG-MPGGQ   45 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESS-CTTGG
T ss_pred             cCCEEEECCCHHHHHHHHHHHHcCC-cEEEEeCC-CCCcc
Confidence            5799999999999999999999999 69999998 67773

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.77  E-value=2.2e-08  Score=95.54  Aligned_cols=41  Identities=20%  Similarity=0.350  Sum_probs=35.9

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecCh
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASI  252 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~  252 (496)
                      .|+++++ ++|++|+.+++++.|.+.+|+++.+|+||+|+..
T Consensus        72 ~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~  112 (311)
T 2q0l_A           72 FGLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGG  112 (311)
T ss_dssp             TSCEEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCE
T ss_pred             cCCEEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCC
Confidence            5788888 7899999888888888888889999999999985

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.76  E-value=1.9e-08  Score=96.88  Aligned_cols=41  Identities=20%  Similarity=0.167  Sum_probs=35.7

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .|+++++++ |++|+.+++.++|++ +|.++++|+||+|+...
T Consensus        83 ~gv~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~  123 (333)
T 1vdc_A           83 FGTTIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAV  123 (333)
T ss_dssp             TTCEEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEE
T ss_pred             CCCEEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCC
Confidence            588999987 999998888888888 77789999999999864

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.75  E-value=1.5e-08  Score=102.28  Aligned_cols=40  Identities=25%  Similarity=0.529  Sum_probs=36.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHH---CCCCc---EEEEeeCCCCCeEEE
Q 010995            7 SPVIIIGAGVSGISAGKILAE---NGIED---ILILEASDRIGGRVR   47 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~---~G~~~---V~vlEa~~~~GGr~~   47 (496)
                      +||+|||||++||+||..|++   .|. +   |+|+|+++.+||.+.
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~-~~~~V~v~E~~~~~GG~w~   48 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGA-EIPELVCFEKQADWGGQWN   48 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTC-CCCEEEEECSSSSSCGGGS
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCC-CCCcEEEEEcCCCCCCEee
Confidence            699999999999999999999   999 8   999999999998443

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.75  E-value=1.4e-07  Score=96.80  Aligned_cols=57  Identities=12%  Similarity=0.103  Sum_probs=41.6

Q ss_pred             HHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCc--eEEEeCCCcEEEcCEEEEecChHHH
Q 010995          193 HLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNG--VTVKTEDGCVYEANYVILSASIGVL  255 (496)
Q Consensus       193 ~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~--v~V~~~~G~~~~ad~VI~A~p~~~l  255 (496)
                      .+.+.|.+.+.+.     .|++++++ +|++|..++++  +.|++.+|.+++||.||.|......
T Consensus       176 ~l~~~L~~~a~~~-----~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~  234 (526)
T 2pyx_A          176 KFSQLLTEHCTQK-----LGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSL  234 (526)
T ss_dssp             HHHHHHHHHHHHT-----SCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCC
T ss_pred             HHHHHHHHHHHhc-----CCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchH
Confidence            3455555554431     48899999 59999987554  3577878778999999999988654

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.74  E-value=2.8e-08  Score=102.03  Aligned_cols=39  Identities=28%  Similarity=0.492  Sum_probs=34.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR   45 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr   45 (496)
                      ..+||+|||||++||+||+.|++ |. +|+|+|+.+..||.
T Consensus         7 ~~~DVvVVG~G~AGl~aAl~la~-G~-~V~vlEk~~~~~g~   45 (540)
T 1chu_A            7 HSCDVLIIGSGAAGLSLALRLAD-QH-QVIVLSKGPVTEGS   45 (540)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTT-TS-CEEEECSSCTTC--
T ss_pred             CCCCEEEECccHHHHHHHHHHhc-CC-cEEEEECCCCCCCC
Confidence            45899999999999999999999 99 69999999887764

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.74  E-value=3.9e-08  Score=100.31  Aligned_cols=54  Identities=20%  Similarity=0.219  Sum_probs=44.3

Q ss_pred             HHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          194 LLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       194 l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      +.+.+.+.+++      .|++|+++++|++|+.+++++.|.+.+|+++.+|.||+|++..
T Consensus       225 ~~~~l~~~l~~------~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~  278 (499)
T 1xdi_A          225 AALVLEESFAE------RGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSV  278 (499)
T ss_dssp             HHHHHHHHHHH------TTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEE
T ss_pred             HHHHHHHHHHH------CCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCC
Confidence            44455555554      7999999999999998877788888888899999999999764

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.74  E-value=9.6e-08  Score=97.11  Aligned_cols=55  Identities=13%  Similarity=0.139  Sum_probs=43.6

Q ss_pred             HHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCC-ceEEEeCCCcEEEcCEEEEecChH
Q 010995          193 HLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRN-GVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       193 ~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~-~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .+.+.+.+.+.+      .|++|+++++|++|+.+++ .+.|++.+|+++.+|.||+|++..
T Consensus       232 ~~~~~l~~~l~~------~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~  287 (490)
T 1fec_A          232 ELRKQLTEQLRA------NGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRV  287 (490)
T ss_dssp             HHHHHHHHHHHH------TTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHHh------CCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCC
Confidence            344555555554      6999999999999998764 477888888889999999999753

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.73  E-value=2.5e-08  Score=98.90  Aligned_cols=55  Identities=15%  Similarity=0.224  Sum_probs=44.6

Q ss_pred             HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCCCcEEEcCEEEEecCh
Q 010995          192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDGCVYEANYVILSASI  252 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~A~p~  252 (496)
                      ..+.+.+.+.+.+      .|++++++++|++|+.+++++. |.+.+|+++.||.||+|++.
T Consensus       184 ~~~~~~l~~~l~~------~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~  239 (404)
T 3fg2_P          184 PEISSYFHDRHSG------AGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGV  239 (404)
T ss_dssp             HHHHHHHHHHHHH------TTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCE
T ss_pred             HHHHHHHHHHHHh------CCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCC
Confidence            3455555555554      7999999999999998877765 88899999999999999975

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.72  E-value=6.5e-08  Score=100.55  Aligned_cols=57  Identities=16%  Similarity=0.133  Sum_probs=44.3

Q ss_pred             HHHHHHHHHhhccCCCCCccc-cceeeCceeEEEEEcCCceE-E--E-eCCCc--EEEcCEEEEecChHH
Q 010995          192 AHLLYKMAEEFLSTSDGKILD-NRLKLNKVVRELQHSRNGVT-V--K-TEDGC--VYEANYVILSASIGV  254 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g-~~i~~~~~V~~I~~~~~~v~-V--~-~~~G~--~~~ad~VI~A~p~~~  254 (496)
                      ..+...|.+.+.+      .| ++|+++++|++|..+++++. |  . +.+|+  .+.||.||+|+....
T Consensus       134 ~~l~~~L~~~~~~------~gnv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s  197 (602)
T 1kf6_A          134 FHMLHTLFQTSLQ------FPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG  197 (602)
T ss_dssp             HHHHHHHHHHHTT------CTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCG
T ss_pred             HHHHHHHHHHHHh------CCCcEEEeCCEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCc
Confidence            5678888888766      56 89999999999998877543 3  2 25675  689999999998644

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.71  E-value=8.6e-08  Score=97.10  Aligned_cols=55  Identities=20%  Similarity=0.207  Sum_probs=44.9

Q ss_pred             HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecCh
Q 010995          192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASI  252 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~  252 (496)
                      ..+.+.+.+.+.+      .|++|+++++|++|+.++++++|.+.+|+++.||.||+|++.
T Consensus       202 ~~~~~~l~~~l~~------~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~  256 (472)
T 3iwa_A          202 KSLSQMLRHDLEK------NDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGV  256 (472)
T ss_dssp             HHHHHHHHHHHHH------TTCEEECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCE
T ss_pred             HHHHHHHHHHHHh------cCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCC
Confidence            3445555555554      699999999999999888888888888889999999999875

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.70  E-value=1.7e-08  Score=103.92  Aligned_cols=55  Identities=15%  Similarity=0.084  Sum_probs=41.5

Q ss_pred             HHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCCCcEEEcCEEEEecChH
Q 010995          193 HLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       193 ~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .+.+.|.+.+.+.     .|++|. +.+|+.|..++++|. |.+.+|.++.||.||+|+...
T Consensus       118 ~l~~~L~~~l~~~-----~GV~I~-~~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~  173 (641)
T 3cp8_A          118 QYSLYMRRIVEHE-----PNIDLL-QDTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTF  173 (641)
T ss_dssp             HHHHHHHHHHHTC-----TTEEEE-ECCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTC
T ss_pred             HHHHHHHHHHHhC-----CCCEEE-eeEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCC
Confidence            3445555554431     378884 669999998888887 888888899999999999864

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.68  E-value=1.9e-07  Score=94.19  Aligned_cols=54  Identities=22%  Similarity=0.262  Sum_probs=43.4

Q ss_pred             HHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCc-EEEcCEEEEecChH
Q 010995          194 LLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGC-VYEANYVILSASIG  253 (496)
Q Consensus       194 l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~-~~~ad~VI~A~p~~  253 (496)
                      +.+.+.+.+.+      .|++++++++|++|+.+++++.|++.+|+ ++.+|.||+|++..
T Consensus       209 ~~~~l~~~l~~------~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~  263 (463)
T 2r9z_A          209 LSATLAENMHA------QGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRA  263 (463)
T ss_dssp             HHHHHHHHHHH------TTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHH------CCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCC
Confidence            34444455544      69999999999999987777888888998 89999999998753

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.68  E-value=1.3e-07  Score=95.08  Aligned_cols=54  Identities=17%  Similarity=0.253  Sum_probs=42.6

Q ss_pred             HHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCc-eEEEeCCCcEEEcCEEEEecChH
Q 010995          194 LLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNG-VTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       194 l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      +.+.+.+.+.+      .|++++++++|++|+.++++ +.|++.+|+++.+|.||+|++..
T Consensus       210 ~~~~l~~~l~~------~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~  264 (450)
T 1ges_A          210 ISETLVEVMNA------EGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGRE  264 (450)
T ss_dssp             HHHHHHHHHHH------HSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHH------CCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCC
Confidence            44444555544      69999999999999987654 77888888889999999998653

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.67  E-value=5e-08  Score=96.05  Aligned_cols=54  Identities=19%  Similarity=0.306  Sum_probs=44.9

Q ss_pred             HHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecCh
Q 010995          193 HLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASI  252 (496)
Q Consensus       193 ~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~  252 (496)
                      .+.+.+.+.+.+      .|++++++++|++|+.+++++.|.+.+|+++++|.||+|++.
T Consensus       188 ~~~~~l~~~l~~------~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~  241 (384)
T 2v3a_A          188 AAAKAVQAGLEG------LGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGL  241 (384)
T ss_dssp             HHHHHHHHHHHT------TTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCE
T ss_pred             HHHHHHHHHHHH------cCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCC
Confidence            455555566555      699999999999999887888888888989999999999864

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.67  E-value=3.7e-08  Score=93.86  Aligned_cols=43  Identities=16%  Similarity=0.194  Sum_probs=36.6

Q ss_pred             cccceeeCceeEEEEEcC---CceEEEeCCCcEEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSR---NGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~---~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .|++++++++|+.|..+.   +.+.|.+.+|+++.+|+||+|+...
T Consensus        69 ~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~  114 (310)
T 1fl2_A           69 YDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAK  114 (310)
T ss_dssp             SCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEE
T ss_pred             cCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCC
Confidence            688999999999998653   3678888888889999999999864

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.66  E-value=3.1e-08  Score=100.08  Aligned_cols=35  Identities=34%  Similarity=0.639  Sum_probs=32.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      ||+|||||++||+||+.|+++|. +|+|+|+. ..||
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~-~V~viek~-~~~g   35 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGK-KVTLISKR-IDGG   35 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTC-CEEEECSS-TTCS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-CEEEEeCC-CCCc
Confidence            79999999999999999999999 69999998 5555

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.65  E-value=1.1e-07  Score=95.68  Aligned_cols=55  Identities=9%  Similarity=0.222  Sum_probs=44.5

Q ss_pred             HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      ..+.+.+.+.+.+      .|++|+++++|++|+..++++.|.+.+| ++.||.||+|++..
T Consensus       189 ~~~~~~l~~~l~~------~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~~  243 (452)
T 3oc4_A          189 KEMVAEVQKSLEK------QAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALNLH  243 (452)
T ss_dssp             HHHHHHHHHHHHT------TTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSCCB
T ss_pred             HHHHHHHHHHHHH------cCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcCCC
Confidence            3455555555555      7999999999999998888888888777 89999999999754

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.64  E-value=7.3e-09  Score=99.63  Aligned_cols=42  Identities=40%  Similarity=0.597  Sum_probs=37.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHH--CCCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAE--NGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~--~G~~~V~vlEa~~~~GGr~~   47 (496)
                      ..+||+|||||+|||+||++|++  .|+ +|+|+|+++.+||.+.
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~-~V~viEk~~~~GG~~~  107 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDL-KVCIIESSVAPGGGSW  107 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTS-CEEEECSSSSCCTTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCC-eEEEEECCCCCCceEE
Confidence            45799999999999999999985  499 6999999999999654

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.63  E-value=1.2e-07  Score=91.39  Aligned_cols=52  Identities=8%  Similarity=0.150  Sum_probs=36.9

Q ss_pred             hCCCCcEEEccccccCcCCccchHHHHHHHHHHHHHHHHHhcccccccccCCc
Q 010995          402 RAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDNERNNSETQN  454 (496)
Q Consensus       402 ~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~~~~~~~~~~~~~  454 (496)
                      ++..++||.+||.... .+.....|+..|..||..|...+.+.+....++.|.
T Consensus       277 ~t~~~~iya~GD~~~~-~~~~~~~A~~~g~~aA~~i~~~l~~~~~~~~~~~~~  328 (335)
T 2a87_A          277 STSLPGVFAAGDLVDR-TYRQAVTAAGSGCAAAIDAERWLAEHAATGEADSTD  328 (335)
T ss_dssp             BCSSTTEEECGGGTCC-SCCCHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred             ccCCCCEEEeeecCCc-cHHHHHHHHHhHHHHHHHHHHHhhcCcCccccCCch
Confidence            4567899999999875 234677899999999999999998766554334443

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.60  E-value=4.7e-07  Score=94.30  Aligned_cols=38  Identities=18%  Similarity=0.358  Sum_probs=35.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeCCCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAEN--GIEDILILEASDRIG   43 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~~~~G   43 (496)
                      .++||+|||||++||+||+.|++.  |. +|+|+|+++.+|
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~-~V~vie~~~~~~   74 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEED-EIIMVERGEYIS   74 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSS-EEEEECSSSCSS
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCC-CEEEEECCCCcc
Confidence            467999999999999999999998  88 799999999876

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.58  E-value=1e-07  Score=97.55  Aligned_cols=43  Identities=16%  Similarity=0.202  Sum_probs=36.7

Q ss_pred             cccceeeCceeEEEEEc---CCceEEEeCCCcEEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHS---RNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~---~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .|++++++++|++|..+   ++.+.|++.+|.++.+|+||+|+...
T Consensus       280 ~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~  325 (521)
T 1hyu_A          280 YDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAK  325 (521)
T ss_dssp             SCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEE
T ss_pred             cCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCC
Confidence            68899999999999864   23678888888899999999999864

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.58  E-value=6.1e-07  Score=93.06  Aligned_cols=37  Identities=22%  Similarity=0.358  Sum_probs=33.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeCCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAEN--GIEDILILEASDRIG   43 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~~~~G   43 (496)
                      ++||+|||||++||+||+.|++.  |. +|+|+|+++.+|
T Consensus         1 M~~VvIIGgG~AGl~aA~~L~~~~~~~-~V~lie~~~~~~   39 (565)
T 3ntd_A            1 MKKILIIGGVAGGASAAARARRLSETA-EIIMFERGEYVS   39 (565)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHCSSS-EEEEECSSSCSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCC-CEEEEECCCCcc
Confidence            36899999999999999999998  78 799999998876

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.57  E-value=1.2e-07  Score=90.64  Aligned_cols=38  Identities=24%  Similarity=0.491  Sum_probs=33.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      .++||+|||||++||+||+.|+++|+ +|+|+|+. .+||
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~-~~gg   41 (320)
T 1trb_A            4 KHSKLLILGSGPAGYTAAVYAARANL-QPVLITGM-EKGG   41 (320)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTC-CCEEECCS-STTG
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC-cEEEEccC-CCCc
Confidence            45799999999999999999999999 69999964 6666

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.55  E-value=3.3e-07  Score=91.00  Aligned_cols=54  Identities=13%  Similarity=0.103  Sum_probs=42.4

Q ss_pred             HHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          194 LLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       194 l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      +.+.+.+.+.+      .|++|+++++|++|+.+++...|++.+|+++.||.||+|++..
T Consensus       187 ~~~~l~~~l~~------~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~  240 (410)
T 3ef6_A          187 IGAWLRGLLTE------LGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAE  240 (410)
T ss_dssp             HHHHHHHHHHH------HTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEE
T ss_pred             HHHHHHHHHHH------CCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCe
Confidence            34444444444      6999999999999988665456888899999999999999753

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.55  E-value=2.8e-08  Score=94.87  Aligned_cols=43  Identities=26%  Similarity=0.465  Sum_probs=36.0

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      |++ ..+||+|||||+|||+||.+|++.|+ +|+|+|+ +.+||.+
T Consensus         2 Mte-~~yDvvIIG~GpAGl~aA~~l~~~g~-~V~liE~-~~~gG~~   44 (312)
T 4gcm_A            2 MTE-IDFDIAIIGAGPAGMTAAVYASRANL-KTVMIER-GIPGGQM   44 (312)
T ss_dssp             --C-CSEEEEEECCSHHHHHHHHHHHHTTC-CEEEEES-SCTTGGG
T ss_pred             CCC-CCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEec-CCCCCee
Confidence            554 46999999999999999999999999 6999998 4677744

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.52  E-value=1.6e-07  Score=92.23  Aligned_cols=40  Identities=8%  Similarity=0.130  Sum_probs=34.8

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecCh
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASI  252 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~  252 (496)
                      .|++++++++|++|+.+++  +|++.+|+++.+|++|+|+..
T Consensus        75 ~~i~~~~~~~V~~id~~~~--~v~~~~g~~~~yd~lvlAtG~  114 (385)
T 3klj_A           75 NNIKVITSEFATSIDPNNK--LVTLKSGEKIKYEKLIIASGS  114 (385)
T ss_dssp             TTCEEECSCCEEEEETTTT--EEEETTSCEEECSEEEECCCE
T ss_pred             CCCEEEeCCEEEEEECCCC--EEEECCCCEEECCEEEEecCC
Confidence            5789999999999998766  566778889999999999985

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.52  E-value=8.8e-07  Score=88.45  Aligned_cols=54  Identities=17%  Similarity=0.142  Sum_probs=42.4

Q ss_pred             HHHHHHHHhhccCCCCCccccceeeCceeEEEEE--cCCce-EEEeCCCcEEEcCEEEEecCh
Q 010995          193 HLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQH--SRNGV-TVKTEDGCVYEANYVILSASI  252 (496)
Q Consensus       193 ~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~--~~~~v-~V~~~~G~~~~ad~VI~A~p~  252 (496)
                      .+.+.+.+.+++      .|++++++++|++|+.  +++++ .|.+.+|+++.+|.||+|++.
T Consensus       192 ~~~~~l~~~l~~------~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~  248 (431)
T 1q1r_A          192 PVSAFYEHLHRE------AGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGL  248 (431)
T ss_dssp             HHHHHHHHHHHH------HTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCE
T ss_pred             HHHHHHHHHHHh------CCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCC
Confidence            344445555544      6999999999999997  55666 588888989999999999975

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.50  E-value=1.9e-06  Score=90.29  Aligned_cols=36  Identities=28%  Similarity=0.496  Sum_probs=32.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHH---H-CCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILA---E-NGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~---~-~G~~~V~vlEa~~~~   42 (496)
                      .+||+|||||++||+||+.|+   + +|. +|+|+|+.+..
T Consensus        22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~-~V~vlEK~~~~   61 (643)
T 1jnr_A           22 ETDILIIGGGFSGCGAAYEAAYWAKLGGL-KVTLVEKAAVE   61 (643)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTC-CEEEECSSCTT
T ss_pred             cCCEEEECcCHHHHHHHHHHhhhhhhCCC-eEEEEeCcCCC
Confidence            479999999999999999999   6 899 69999998753

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.43  E-value=2.8e-07  Score=94.19  Aligned_cols=55  Identities=11%  Similarity=0.013  Sum_probs=46.2

Q ss_pred             HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecCh
Q 010995          192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASI  252 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~  252 (496)
                      ..+.+.+.+.+++      .|+++++++.|++++..++++.|.+.++.++.+|.|++|+..
T Consensus       263 ~ei~~~l~~~l~~------~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR  317 (542)
T 4b1b_A          263 QQCAVKVKLYMEE------QGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGR  317 (542)
T ss_dssp             HHHHHHHHHHHHH------TTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCE
T ss_pred             hhHHHHHHHHHHh------hcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccc
Confidence            3455556666655      799999999999999999999999988889999999999864

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.39  E-value=2.3e-07  Score=90.47  Aligned_cols=38  Identities=34%  Similarity=0.544  Sum_probs=34.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIG   43 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~G   43 (496)
                      .++||+|||||++|+++|++|+++|. +|+|+|+....+
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~~G~-~V~vle~~~~~~   42 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILARKGY-SVHILARDLPED   42 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCTTC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCC-EEEEEeccCCCC
Confidence            57899999999999999999999999 799999987443

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.36  E-value=1.8e-07  Score=89.17  Aligned_cols=35  Identities=23%  Similarity=0.336  Sum_probs=32.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+||+|||||+|||+||.+|+++|+ +|+|+|+..
T Consensus         3 ~~yDvvIIG~GpAGl~AA~~la~~g~-~v~liE~~~   37 (314)
T 4a5l_A            3 NIHDVVIIGSGPAAHTAAIYLGRSSL-KPVMYEGFM   37 (314)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTC-CCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Confidence            37999999999999999999999999 699999864

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.34  E-value=1.8e-06  Score=87.57  Aligned_cols=42  Identities=7%  Similarity=0.156  Sum_probs=35.5

Q ss_pred             cccceeeCceeEEEEEcCCceEEEe-CCCc--EEEcCEEEEecCh
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKT-EDGC--VYEANYVILSASI  252 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~-~~G~--~~~ad~VI~A~p~  252 (496)
                      .|++++++++|+.|+.+++.+.+.. .+|+  ++.+|++|+|+..
T Consensus       106 ~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~  150 (480)
T 3cgb_A          106 YGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGV  150 (480)
T ss_dssp             TCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred             cCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCC
Confidence            4788999999999998888788776 4565  7999999999985

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.33  E-value=3.5e-07  Score=91.79  Aligned_cols=41  Identities=32%  Similarity=0.570  Sum_probs=38.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      ..+||+|||||++||+||+.|++.|+ +|+|+|+.+++||..
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~-~V~v~e~~~~~GG~l  161 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGY-EVHVYDRYDRMGGLL  161 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTC-CEEEECSSSSCSTHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCCCCCee
Confidence            46899999999999999999999999 699999999999853

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.28  E-value=3.4e-07  Score=87.17  Aligned_cols=40  Identities=33%  Similarity=0.554  Sum_probs=36.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEE-EeeCCCCCeE
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILI-LEASDRIGGR   45 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~v-lEa~~~~GGr   45 (496)
                      ..++||+|||||++||+||+.|+++|+ +|+| +|+ +.+||.
T Consensus         2 ~~~~~vvIIG~G~aGl~aA~~l~~~g~-~v~li~e~-~~~gG~   42 (315)
T 3r9u_A            2 NAMLDVAIIGGGPAGLSAGLYATRGGL-KNVVMFEK-GMPGGQ   42 (315)
T ss_dssp             CSCEEEEEECCSHHHHHHHHHHHHHTC-SCEEEECS-SSTTGG
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCC-CeEEEEeC-CCCCce
Confidence            357899999999999999999999999 6999 999 677774

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.26  E-value=3.6e-07  Score=92.33  Aligned_cols=41  Identities=27%  Similarity=0.504  Sum_probs=37.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      .+||+|||||++||+||..|++.|. +|+|+|+++.+||.+.
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~-~V~liEk~~~~GG~~~   44 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKY-NVLMADPKGELGGNCL   44 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECTTSSSSHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCC-eEEEEECCCCCCCccc
Confidence            5899999999999999999999999 6999999999998543

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.24  E-value=4.2e-07  Score=88.18  Aligned_cols=37  Identities=30%  Similarity=0.354  Sum_probs=32.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCC------CCcEEEEeeCCCCCe
Q 010995            7 SPVIIIGAGVSGISAGKILAENG------IEDILILEASDRIGG   44 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G------~~~V~vlEa~~~~GG   44 (496)
                      .||+|||||++||++|++|+++|      . +|+|||+....+|
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~-~V~vlE~~~~~~~   43 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPL-DIKVYADRFTPLT   43 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSC-EEEEEESSCGGGS
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCc-eEEEEECCCCCCC
Confidence            38999999999999999999998      8 7999999875444

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.23  E-value=9.5e-07  Score=90.51  Aligned_cols=43  Identities=26%  Similarity=0.339  Sum_probs=38.9

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      +.++||+|||||++|++||+.|++.|. +|+|+|+++.+||.+.
T Consensus        41 ~~~~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE~~~~~GG~~~   83 (523)
T 1mo9_A           41 PREYDAIFIGGGAAGRFGSAYLRAMGG-RQLIVDRWPFLGGSCP   83 (523)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSSSSCHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCCCCCCccc
Confidence            346899999999999999999999999 6999999988998654

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.21  E-value=6e-07  Score=91.39  Aligned_cols=38  Identities=16%  Similarity=0.091  Sum_probs=30.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      .+||||||||++||++|..|.++|. ..+++|+.+..|+
T Consensus        39 i~Dvi~IGaGp~gLa~A~~L~~~~~-~~~~~~~~~~~~~   76 (501)
T 4b63_A           39 LHDLLCVGFGPASLAIAIALHDALD-PRLNKSASNIHAQ   76 (501)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHC-TTTCTTC----CC
T ss_pred             cCcEEEEcccHHHHHHHHHHHhcCC-CceEEeccccCCC
Confidence            4799999999999999999999988 5778888776665

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.20  E-value=7.9e-07  Score=84.97  Aligned_cols=37  Identities=38%  Similarity=0.629  Sum_probs=33.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      .+||+|||||++||+||+.|+++|+ +|+|+|+ ..+||
T Consensus        16 ~~dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~-~~~gg   52 (319)
T 3cty_A           16 DFDVVIVGAGAAGFSAAVYAARSGF-SVAILDK-AVAGG   52 (319)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEEES-SSTTG
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCC-cEEEEeC-CCCCc
Confidence            4799999999999999999999999 6999999 46676

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.19  E-value=1.1e-06  Score=90.06  Aligned_cols=35  Identities=31%  Similarity=0.524  Sum_probs=32.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+||+|||||++||+||..|++.|. +|+|+|+.+
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~~G~-~V~liEk~~   65 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQYGK-KVMVLDFVT   65 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTC-CEEEECCCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCC-eEEEEeccC
Confidence            45899999999999999999999999 699999964

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.19  E-value=9e-07  Score=93.81  Aligned_cols=42  Identities=40%  Similarity=0.751  Sum_probs=38.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      ..+||+|||||++||+||+.|+++|+ +|+|+|+++++||.+.
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~-~V~liE~~~~~GG~~~  431 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGY-DVVLAEAGRDLGGRVT  431 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSSSSCTHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCEee
Confidence            46799999999999999999999999 7999999999998755

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.19  E-value=8.1e-07  Score=90.05  Aligned_cols=40  Identities=25%  Similarity=0.549  Sum_probs=35.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      .++||+|||||++||+||+.|++.|+ +|+|+|++ .+||.+
T Consensus        19 ~~~dVvIIGgG~aGl~aA~~la~~G~-~V~liE~~-~~GG~~   58 (478)
T 3dk9_A           19 ASYDYLVIGGGSGGLASARRAAELGA-RAAVVESH-KLGGTC   58 (478)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS-CTTHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCC-eEEEEecC-CCCCcc
Confidence            45899999999999999999999999 69999965 788864

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.18  E-value=1.3e-06  Score=88.45  Aligned_cols=42  Identities=29%  Similarity=0.470  Sum_probs=38.5

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      ..++||+|||||++|++||..|++.|+ +|+|+|+++.+||.+
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~-~V~liE~~~~~GG~~   45 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGF-KTTCIEKRGALGGTC   45 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTC-CEEEEECSSSSCCSH
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCccccc
Confidence            457899999999999999999999999 699999998898854

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.17  E-value=8.5e-07  Score=89.81  Aligned_cols=42  Identities=26%  Similarity=0.462  Sum_probs=38.5

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      +.++||+|||||++|++||..|++.|+ +|+|+|+++.+||.+
T Consensus         4 ~~~~dvvIIGgG~aGl~aA~~l~~~g~-~V~liE~~~~~GG~~   45 (474)
T 1zmd_A            4 PIDADVTVIGSGPGGYVAAIKAAQLGF-KTVCIEKNETLGGTC   45 (474)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSSSSSHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCCCcCCcc
Confidence            456899999999999999999999999 699999999999964

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.15  E-value=1.1e-06  Score=87.81  Aligned_cols=35  Identities=23%  Similarity=0.528  Sum_probs=31.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .++||+|||||++||++|+.|+++|+ +|+|+|+++
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G~-~V~viE~~~   55 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHDV-DVTVYTDRK   55 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTTC-EEEEEESCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCC-eEEEEcCCC
Confidence            34799999999999999999999999 799999976

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.14  E-value=1.6e-06  Score=85.18  Aligned_cols=35  Identities=29%  Similarity=0.404  Sum_probs=32.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeCCCC
Q 010995            7 SPVIIIGAGVSGISAGKILAEN--GIEDILILEASDRI   42 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~~~~   42 (496)
                      .||+|||||++||++|..|+++  |+ +|+|+|+++.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~-~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLW-AIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTS-EEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCC-CEEEEECCCCC
Confidence            3799999999999999999999  99 79999998776

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.14  E-value=1.6e-06  Score=87.54  Aligned_cols=41  Identities=27%  Similarity=0.476  Sum_probs=37.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      .++||+|||||++|++||+.|++.|+ +|+|+|++ .+||.+.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~-~V~lie~~-~~GG~~~   43 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQGA-QVTLIERG-TIGGTCV   43 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS-STTHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC-CCCcccc
Confidence            47899999999999999999999999 79999998 7888643

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.12  E-value=1.4e-06  Score=87.60  Aligned_cols=56  Identities=18%  Similarity=0.190  Sum_probs=43.9

Q ss_pred             HHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          192 AHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       192 ~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      ..+.+.+.+.+.+      .|++++++++|++|+.+++++.|++.+|+++.+|.||+|++..
T Consensus       208 ~~~~~~l~~~l~~------~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~  263 (455)
T 2yqu_A          208 LEVSRAAERVFKK------QGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRR  263 (455)
T ss_dssp             HHHHHHHHHHHHH------HTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHHHH------CCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCC
Confidence            3445555555554      6899999999999998877788888788889999999998754

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.12  E-value=1.1e-06  Score=88.52  Aligned_cols=44  Identities=32%  Similarity=0.547  Sum_probs=36.7

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      |...+++||+|||||++|++||..|++.|. +|+|+|+++ +||.+
T Consensus         1 m~~m~~~dvvIIG~G~aG~~aA~~l~~~g~-~V~lie~~~-~GG~~   44 (464)
T 2eq6_A            1 MTPMKTYDLIVIGTGPGGYHAAIRAAQLGL-KVLAVEAGE-VGGVC   44 (464)
T ss_dssp             ---CEEEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSC-TTHHH
T ss_pred             CCCcccCCEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCC-CCCCC
Confidence            443335899999999999999999999999 699999987 88854

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.11  E-value=1.6e-06  Score=88.16  Aligned_cols=42  Identities=21%  Similarity=0.416  Sum_probs=36.9

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEee--------CCCCCeEE
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEA--------SDRIGGRV   46 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa--------~~~~GGr~   46 (496)
                      ..++||+|||||++||+||..|++.|. +|+|+|+        ...+||.+
T Consensus         4 ~~~~DvvVIG~G~aGl~aA~~la~~G~-~V~liEk~~~~~~~~~~~~GGtc   53 (488)
T 3dgz_A            4 QQSFDLLVIGGGSGGLACAKEAAQLGK-KVAVADYVEPSPRGTKWGLGGTC   53 (488)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECCCCCCTTSCCCCTTCHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCC-eEEEEEecccccccccCCcCCee
Confidence            456899999999999999999999999 6999998        55677744

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.09  E-value=1.8e-06  Score=87.50  Aligned_cols=41  Identities=29%  Similarity=0.491  Sum_probs=37.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      .++||+|||||++|++||..|++.|+ +|+|+|+++.+||.+
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE~~~~~GG~~   44 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQLGF-NTACVEKRGKLGGTC   44 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSSSSHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCcCCcc
Confidence            35899999999999999999999999 699999999998854

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.08  E-value=2.3e-06  Score=91.15  Aligned_cols=42  Identities=33%  Similarity=0.743  Sum_probs=38.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      ..+||+|||||++||+||+.|++.|+ +|+|+|+++.+||.+.
T Consensus       388 ~~~~VvIIGgGpAGl~aA~~L~~~G~-~Vtlie~~~~~GG~~~  429 (729)
T 1o94_A          388 NKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAEKIGGHLN  429 (729)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSTTTTHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCcCCeee
Confidence            45799999999999999999999999 7999999999998654

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.07  E-value=1.5e-06  Score=88.13  Aligned_cols=40  Identities=30%  Similarity=0.561  Sum_probs=37.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      ++||+|||||++|++||..|++.|. +|+|+|+++.+||.+
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~~G~-~V~liE~~~~~GG~~   45 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAADEGL-KVAIVERYKTLGGVC   45 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSCSSHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCCCCCCce
Confidence            5799999999999999999999999 699999999999854

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.07  E-value=1.9e-06  Score=87.33  Aligned_cols=41  Identities=27%  Similarity=0.540  Sum_probs=36.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      .++||+|||||++|++||+.|++.|. +|+|+|++ .+||.+.
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~-~V~liE~~-~~GG~~~   50 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGA-KTLLVEAK-ALGGTCV   50 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSC-CEEEEESS-CTTHHHH
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCC-cEEEEeCC-CcCCcCc
Confidence            35899999999999999999999999 69999997 6888653

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.06  E-value=2.5e-06  Score=86.50  Aligned_cols=33  Identities=27%  Similarity=0.451  Sum_probs=31.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEee
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEA   38 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa   38 (496)
                      ..+||+|||||++|++||+.|++.|. +|+|+|+
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G~-~V~liEk   40 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNGA-RVACLDF   40 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTC-CEEEECC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC-EEEEEEe
Confidence            56899999999999999999999999 6999995

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.06  E-value=3.8e-06  Score=80.52  Aligned_cols=38  Identities=24%  Similarity=0.346  Sum_probs=34.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      ++||+|||||++|+.||+.|+++|. +|+|+|++...+.
T Consensus         1 m~dViVIGgG~AG~~AA~~la~~G~-~V~liE~~~~~~t   38 (443)
T 3g5s_A            1 MERVNVVGAGLAGSEAAWTLLRLGV-PVRLFEMRPKRMT   38 (443)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC-CEEEECCTTTSCC
T ss_pred             CCCEEEECchHHHHHHHHHHHHCCC-cEEEEeccCCcCC
Confidence            4799999999999999999999999 6999999876543

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.05  E-value=2.4e-05  Score=78.66  Aligned_cols=36  Identities=33%  Similarity=0.674  Sum_probs=32.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      ..+|+|||||.+|+.+|..|++.|. +|+|+|+++++
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~-~V~lv~~~~~~  202 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGA-EVIVLEYMDRI  202 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-EEEEEecCCcc
Confidence            4689999999999999999999999 79999997754

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.02  E-value=2.9e-06  Score=88.40  Aligned_cols=38  Identities=21%  Similarity=0.451  Sum_probs=36.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      .+||+|||||++||+||+.|+++|+ +|+|+|+.+..||
T Consensus        46 ~~dvvIIG~G~aGl~aA~~l~~~G~-~V~liE~~~~~gg   83 (623)
T 3pl8_A           46 KYDVVIVGSGPIGCTYARELVGAGY-KVAMFDIGEIDSG   83 (623)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCCSS
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCC-cEEEEeccCCCCC
Confidence            5799999999999999999999999 7999999999988

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.01  E-value=3e-06  Score=85.27  Aligned_cols=41  Identities=27%  Similarity=0.498  Sum_probs=37.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      .++||+|||||.+|++||..|++.|. +|+|+|+ +.+||.+.
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~-~~~GG~~~   44 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGI-PTVLVEG-QALGGTCL   44 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTC-CEEEECS-SCTTHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC-EEEEEcc-CCCCCcCC
Confidence            46899999999999999999999999 6999999 78998764

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.01  E-value=3e-06  Score=86.08  Aligned_cols=39  Identities=23%  Similarity=0.423  Sum_probs=35.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      ++||+|||||++||+||..|++.|. +|+|+|++ .+||.|
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~-~V~liE~~-~~GGtc   46 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTD-KVVLIEGG-AYGTTC   46 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCS-CEEEEESS-CSSCHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC-cEEEEeCC-CCCCcc
Confidence            4799999999999999999999999 69999996 488865

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.99  E-value=3.7e-06  Score=84.58  Aligned_cols=39  Identities=28%  Similarity=0.501  Sum_probs=35.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      ++||+|||||++|++||..|++.|. +|+|+|++ .+||.+
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~-~V~lie~~-~~gG~~   41 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKG-NLGGVC   41 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS-CTTHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-eEEEEECC-CCCCcC
Confidence            5899999999999999999999999 69999998 788754

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.99  E-value=2.3e-06  Score=86.95  Aligned_cols=54  Identities=9%  Similarity=0.148  Sum_probs=42.1

Q ss_pred             HHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCC-ceEEEeCCCcEEEcCEEEEecCh
Q 010995          193 HLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRN-GVTVKTEDGCVYEANYVILSASI  252 (496)
Q Consensus       193 ~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~-~v~V~~~~G~~~~ad~VI~A~p~  252 (496)
                      .+.+.+.+.+.+      .|++|+++++|++|+.+++ .+.|++.+|+++.+|.||+|++.
T Consensus       236 ~~~~~l~~~l~~------~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~  290 (495)
T 2wpf_A          236 TIREEVTKQLTA------NGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGR  290 (495)
T ss_dssp             HHHHHHHHHHHH------TTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred             HHHHHHHHHHHh------CCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCC
Confidence            344455555554      6999999999999988754 46788888888999999999864

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.99  E-value=4.4e-06  Score=85.03  Aligned_cols=55  Identities=11%  Similarity=0.164  Sum_probs=43.2

Q ss_pred             HHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCc-eEEEeCCCcE-EEcCEEEEecChH
Q 010995          193 HLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNG-VTVKTEDGCV-YEANYVILSASIG  253 (496)
Q Consensus       193 ~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v~V~~~~G~~-~~ad~VI~A~p~~  253 (496)
                      .+.+.+.+.+.+      .|++++++++|++|+.++++ +.|.+.+|++ +.+|.||+|++..
T Consensus       218 ~~~~~l~~~l~~------~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~  274 (500)
T 1onf_A          218 SVINVLENDMKK------NNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRS  274 (500)
T ss_dssp             HHHHHHHHHHHH------TTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBC
T ss_pred             hhHHHHHHHHHh------CCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCC
Confidence            345555555555      69999999999999986544 7788888877 9999999998753

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.98  E-value=3e-06  Score=85.54  Aligned_cols=39  Identities=31%  Similarity=0.457  Sum_probs=35.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      ++||+|||||++|++||..|++.|+ +|+|+|++ .+||.+
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~-~V~liE~~-~~gG~~   41 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGL-STAIVEPK-YWGGVC   41 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSS-CTTHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCC-CCCCcc
Confidence            5799999999999999999999999 69999998 677644

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.97  E-value=3.2e-05  Score=77.93  Aligned_cols=43  Identities=14%  Similarity=0.214  Sum_probs=36.4

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeC-C--Cc--EEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTE-D--GC--VYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~-~--G~--~~~ad~VI~A~p~~  253 (496)
                      .|++++++++|++|+.+++++.|++. +  |+  ++.+|.||+|++..
T Consensus       223 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~  270 (464)
T 2eq6_A          223 EGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRK  270 (464)
T ss_dssp             TTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEE
T ss_pred             cCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcc
Confidence            58999999999999988777777765 6  76  89999999998653

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.97  E-value=4.7e-06  Score=88.04  Aligned_cols=41  Identities=24%  Similarity=0.537  Sum_probs=37.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      .++||+|||||++||+||..|++.|+ +|+|+|+++.+||..
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~g~-~V~lie~~~~~gg~~  412 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHSEIGGQF  412 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSSSCTTH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCCCCCCee
Confidence            46799999999999999999999999 799999999999854

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.93  E-value=5.9e-06  Score=82.95  Aligned_cols=40  Identities=30%  Similarity=0.483  Sum_probs=34.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeCCCCCeE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAEN--GIEDILILEASDRIGGR   45 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~~~~GGr   45 (496)
                      +++||+|||||++||+||+.|++.  |. +|+|+|+++.+++.
T Consensus         2 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~-~V~vie~~~~~~~~   43 (449)
T 3kd9_A            2 SLKKVVIIGGGAAGMSAASRVKRLKPEW-DVKVFEATEWVSHA   43 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTS-EEEEECSSSCCC--
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHhCcCC-CEEEEECCCccccC
Confidence            357999999999999999999998  78 79999999987754

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.91  E-value=4.3e-06  Score=82.85  Aligned_cols=36  Identities=17%  Similarity=0.325  Sum_probs=32.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHH---CCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAE---NGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~---~G~~~V~vlEa~~~~   42 (496)
                      ++||+|||||++||+||+.|++   .|. +|+|+|+++..
T Consensus         1 m~~VvIIGgG~aGl~aA~~L~~~~~~g~-~V~vie~~~~~   39 (409)
T 3h8l_A            1 MTKVLVLGGRFGALTAAYTLKRLVGSKA-DVKVINKSRFS   39 (409)
T ss_dssp             -CEEEEECSSHHHHHHHHHHHHHHGGGS-EEEEEESSSEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCC-eEEEEeCCCCc
Confidence            3689999999999999999999   899 79999998843

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.90  E-value=6.6e-06  Score=90.88  Aligned_cols=41  Identities=34%  Similarity=0.590  Sum_probs=37.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      .+||+|||||+|||+||+.|+++|+++|+|+|+.+++||.+
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~  227 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLS  227 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHH
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccc
Confidence            57999999999999999999999982299999999999964

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=97.90  E-value=7.6e-06  Score=85.58  Aligned_cols=37  Identities=14%  Similarity=0.234  Sum_probs=33.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHC------CCCcEEEEeeCCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAEN------GIEDILILEASDRIG   43 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~------G~~~V~vlEa~~~~G   43 (496)
                      .+||+|||||+|||+||+.|+++      |. +|+|||+....+
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~-~V~vleK~~~~~   64 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEA-KILLVDKASLER   64 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHHCTTC-CEEEECSSCTTT
T ss_pred             EcCEEEECCCHHHHHHHHHHHhhccccCCCC-cEEEEEecCCCC
Confidence            47999999999999999999998      99 699999987644

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.89  E-value=5.5e-06  Score=83.10  Aligned_cols=42  Identities=26%  Similarity=0.278  Sum_probs=37.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHH-C------CCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAE-N------GIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~-~------G~~~V~vlEa~~~~GGr~~   47 (496)
                      +++||+|||||++|++||..|++ .      |+ +|+|+|+.+.+||.+.
T Consensus         2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~-~V~lie~~~~~gg~~~   50 (456)
T 1lqt_A            2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDM-AVDMLEMLPTPWGLVR   50 (456)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCE-EEEEEESSSSCSTHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhCccccCCCC-eEEEEecCCCCCCccc
Confidence            35799999999999999999999 7      99 7999999999998663

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.87  E-value=4.7e-06  Score=84.67  Aligned_cols=40  Identities=30%  Similarity=0.509  Sum_probs=36.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      ++||+|||||++||+||++|+++ + +|+|+|+++++||.+.
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~-~V~vie~~~~~GG~~~  147 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-L-TVALIEERGWLGGDMW  147 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-C-CEEEECTTSSSSCSGG
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-C-CEEEEeCCCCCCCeee
Confidence            36899999999999999999999 8 7999999999998654

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.86  E-value=7.1e-05  Score=75.15  Aligned_cols=36  Identities=33%  Similarity=0.594  Sum_probs=32.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      .++|+|||||.+|+-+|..|++.|. +|+|+|+++++
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~  205 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGT-KVTILEGAGEI  205 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-cEEEEEcCCcc
Confidence            4789999999999999999999999 79999987654

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.85  E-value=5.5e-06  Score=90.83  Aligned_cols=41  Identities=24%  Similarity=0.618  Sum_probs=38.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      .+||+|||||++||+||..|++.|+ +|+|+|+++++||++.
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~-~V~lie~~~~~GG~~~  168 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGA-RVMLLDERAEAGGTLL  168 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSSGGGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC-cEEEEeCCCCCCceec
Confidence            4689999999999999999999999 6999999999999877

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.84  E-value=9.8e-06  Score=81.39  Aligned_cols=41  Identities=20%  Similarity=0.262  Sum_probs=37.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC--CCcEEEEeeCCCCCeEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENG--IEDILILEASDRIGGRV   46 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G--~~~V~vlEa~~~~GGr~   46 (496)
                      ..+||+|||||++|++||..|++.|  + +|+|+|+.+.+||++
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~-~V~vie~~~~~gg~~   47 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRA-HVDIYEKQLVPFGLV   47 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSC-EEEEECSSSSSCTHH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCC-CEEEEeCCCcCCcee
Confidence            4679999999999999999999998  8 799999999998865

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.83  E-value=1.4e-05  Score=79.14  Aligned_cols=43  Identities=23%  Similarity=0.420  Sum_probs=34.5

Q ss_pred             CCC-CCCCCEEEECCCHHHHHHHHHHHHCCCC-cEEEEeeCCCCC
Q 010995            1 MDS-TSRSPVIIIGAGVSGISAGKILAENGIE-DILILEASDRIG   43 (496)
Q Consensus         1 m~~-~~~~dVvIIGaGiaGL~aA~~L~~~G~~-~V~vlEa~~~~G   43 (496)
                      |+. ..++||+|||||++|++||+.|++.|++ +|+|+|+++.++
T Consensus         1 M~~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~   45 (408)
T 2gqw_A            1 MSQEALKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERP   45 (408)
T ss_dssp             -----CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCC
T ss_pred             CCCCCCCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCc
Confidence            543 3468999999999999999999999982 499999988654

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.83  E-value=1.1e-05  Score=82.00  Aligned_cols=38  Identities=21%  Similarity=0.376  Sum_probs=34.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCC---CCcEEEEeeCCCCCe
Q 010995            6 RSPVIIIGAGVSGISAGKILAENG---IEDILILEASDRIGG   44 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G---~~~V~vlEa~~~~GG   44 (496)
                      ++||+|||||++|++||..|++.|   . +|+|+|+++.+|.
T Consensus        35 ~~dvvIIGaG~aGl~aA~~l~~~g~~~~-~V~lie~~~~~~~   75 (490)
T 2bc0_A           35 GSKIVVVGANHAGTACIKTMLTNYGDAN-EIVVFDQNSNISF   75 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHHGGGS-EEEEECSSSCCSB
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCC-eEEEEECCCCCCc
Confidence            489999999999999999999988   8 7999999887653

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.83  E-value=5.4e-05  Score=76.57  Aligned_cols=36  Identities=25%  Similarity=0.538  Sum_probs=32.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      .++|+|||||.+|+-+|..|++.|. +|+|+|+++++
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~  218 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEFQPQI  218 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCC-EEEEEEeCCcc
Confidence            4689999999999999999999999 79999987643

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.82  E-value=8.4e-05  Score=74.44  Aligned_cols=36  Identities=31%  Similarity=0.598  Sum_probs=32.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..++|+|||||.+|+.+|..|++.|. +|+|+|++++
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~  183 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILDR  183 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCcc
Confidence            46799999999999999999999999 7999998764

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.79  E-value=1.3e-05  Score=83.63  Aligned_cols=33  Identities=33%  Similarity=0.549  Sum_probs=31.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEee
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEA   38 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa   38 (496)
                      ..+||+|||||++||+||..|++.|+ +|+|+|+
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~g~-~v~liE~  138 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKYGA-KTAVLDY  138 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHTTC-CEEEECC
T ss_pred             ccccEEEECCCccHHHHHHHHHhCCC-eEEEEec
Confidence            46899999999999999999999999 6999997

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.74  E-value=1.8e-05  Score=81.47  Aligned_cols=37  Identities=38%  Similarity=0.564  Sum_probs=33.6

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ...+|+||||||.+|+++|++|+++|+ +|+|||+...
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~~g~-~VlvlE~g~~   41 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGP   41 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSCC
T ss_pred             CCceeEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCCC
Confidence            457899999999999999999999999 6999999864

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.73  E-value=1.9e-05  Score=79.23  Aligned_cols=54  Identities=15%  Similarity=0.213  Sum_probs=41.6

Q ss_pred             HHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCCCcEEEcCEEEEecChH
Q 010995          193 HLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       193 ~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .+.+.+.+.+++      .|++|+++++|++|+.+++++. |.+ +|+++.+|.||+|++..
T Consensus       192 ~~~~~l~~~l~~------~Gv~i~~~~~v~~i~~~~~~v~~v~~-~g~~i~~D~vv~a~G~~  246 (452)
T 2cdu_A          192 EFTDILAKDYEA------HGVNLVLGSKVAAFEEVDDEIITKTL-DGKEIKSDIAILCIGFR  246 (452)
T ss_dssp             HHHHHHHHHHHH------TTCEEEESSCEEEEEEETTEEEEEET-TSCEEEESEEEECCCEE
T ss_pred             hHHHHHHHHHHH------CCCEEEcCCeeEEEEcCCCeEEEEEe-CCCEEECCEEEECcCCC
Confidence            345555555555      6999999999999997666675 554 77889999999999754

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.73  E-value=1.6e-05  Score=79.39  Aligned_cols=35  Identities=31%  Similarity=0.615  Sum_probs=32.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHH---CCCCcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAE---NGIEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~---~G~~~V~vlEa~~~   41 (496)
                      ++||+|||||++||+||+.|++   .|+ +|+|+|+++.
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~-~Vtlie~~~~   41 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGH-EVTLISANDY   41 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGS-EEEEECSSSE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcC-EEEEEeCCCC
Confidence            6899999999999999999999   899 7999999874

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.71  E-value=0.00018  Score=72.53  Aligned_cols=36  Identities=28%  Similarity=0.547  Sum_probs=32.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      ..+|+|||||.+|+-+|..|++.|. +|+|+|+++++
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~  213 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGA-DVTAVEFLGHV  213 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCC-EEEEEeccCcc
Confidence            4689999999999999999999999 79999987643

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.70  E-value=0.00019  Score=73.30  Aligned_cols=42  Identities=21%  Similarity=0.290  Sum_probs=36.3

Q ss_pred             cccceeeCceeEEEEEcCCc----eEEEeCCCc-EEEcCEEEEecCh
Q 010995          211 LDNRLKLNKVVRELQHSRNG----VTVKTEDGC-VYEANYVILSASI  252 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~----v~V~~~~G~-~~~ad~VI~A~p~  252 (496)
                      .|++|+++++|++|+.++++    +.|++.+|+ ++.||.||+|++.
T Consensus       268 ~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~  314 (523)
T 1mo9_A          268 QGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGE  314 (523)
T ss_dssp             TTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCC
T ss_pred             CCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCC
Confidence            68999999999999986555    678888887 8999999999864

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.70  E-value=0.00028  Score=69.71  Aligned_cols=35  Identities=26%  Similarity=0.568  Sum_probs=32.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      .++|+|||||.+|+-+|..|++.|. +|+|+|++++
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~  179 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGV-HVSLVETQPR  179 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-EEEEEEeCCc
Confidence            5789999999999999999999999 7999998663

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.69  E-value=2.4e-05  Score=78.38  Aligned_cols=36  Identities=28%  Similarity=0.319  Sum_probs=33.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeCCCCC
Q 010995            7 SPVIIIGAGVSGISAGKILAEN--GIEDILILEASDRIG   43 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~~~~G   43 (496)
                      +||+|||||.+|++||..|++.  |. +|+|+|+++.+|
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~-~V~lie~~~~~~   38 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDA-EIQWYEKGDFIS   38 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTS-EEEEEESSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCC-eEEEEECCCccC
Confidence            3899999999999999999998  88 799999998876

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.69  E-value=0.00023  Score=71.85  Aligned_cols=42  Identities=5%  Similarity=0.106  Sum_probs=35.9

Q ss_pred             cccceeeCceeEEEEEcCCc--eEEEeCCC-cEEEcCEEEEecCh
Q 010995          211 LDNRLKLNKVVRELQHSRNG--VTVKTEDG-CVYEANYVILSASI  252 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~--v~V~~~~G-~~~~ad~VI~A~p~  252 (496)
                      .|++|+++++|++|+.++++  +.|++.+| +++.+|.||+|++.
T Consensus       239 ~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~  283 (479)
T 2hqm_A          239 EGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGR  283 (479)
T ss_dssp             HTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCE
T ss_pred             CCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCC
Confidence            58999999999999986554  67888888 78999999999975

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.68  E-value=0.00018  Score=72.77  Aligned_cols=43  Identities=16%  Similarity=0.142  Sum_probs=36.5

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCC----CcEEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTED----GCVYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~----G~~~~ad~VI~A~p~~  253 (496)
                      .|++|+++++|++|+.+++++.|++.+    |+++.+|.||+|++..
T Consensus       239 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~  285 (482)
T 1ojt_A          239 RFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRA  285 (482)
T ss_dssp             GEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEE
T ss_pred             cCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCC
Confidence            689999999999999877777777665    6789999999998754

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.65  E-value=0.00032  Score=70.31  Aligned_cols=36  Identities=17%  Similarity=0.473  Sum_probs=32.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      ..+|+|||||.+|+-.|..|++.|. +|+|+|+.+++
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~  184 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQNY-NVNLIDGHERV  184 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSST
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCC-EEEEEEcCCch
Confidence            4689999999999999999999999 79999987654

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.63  E-value=2.2e-05  Score=80.53  Aligned_cols=36  Identities=25%  Similarity=0.505  Sum_probs=31.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHH-CCCCcEEEEeeCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAE-NGIEDILILEASDR   41 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~-~G~~~V~vlEa~~~   41 (496)
                      ..+|+||||||.+|+..|.+|++ .|+ +|+||||.+.
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~-~VLvLEaG~~   52 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDS-RVLLIEAGEE   52 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTS-CEEEECSSBC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCC-eEEEEcCCCC
Confidence            46899999999999999999998 678 6999999653

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.62  E-value=3e-05  Score=78.65  Aligned_cols=55  Identities=16%  Similarity=0.180  Sum_probs=44.5

Q ss_pred             HHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          193 HLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       193 ~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .+.+.+.+.+.+      .|++++++++|++|+.+++++.|++.+|+++.||.||+|++..
T Consensus       227 ~~~~~~~~~l~~------~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~  281 (493)
T 1m6i_A          227 YLSNWTMEKVRR------EGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLE  281 (493)
T ss_dssp             HHHHHHHHHHHT------TTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEE
T ss_pred             HHHHHHHHHHHh------cCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCC
Confidence            344455555555      7999999999999998777778888899899999999999754

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.62  E-value=0.00039  Score=70.44  Aligned_cols=36  Identities=17%  Similarity=0.290  Sum_probs=32.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHC---CCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAEN---GIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~---G~~~V~vlEa~~~~   42 (496)
                      ..+|+|||||..|+-.|..|++.   |. +|+|+|+++++
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~-~Vtlv~~~~~~  229 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGG-KVTLCYRNNLI  229 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTC-EEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCC-eEEEEEcCCcc
Confidence            46899999999999999999999   99 79999987654

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.61  E-value=0.00035  Score=70.91  Aligned_cols=36  Identities=25%  Similarity=0.449  Sum_probs=33.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      ..+|+|||||.+|+-.|..|++.|. +|+|+|+++++
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~~~~  211 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGI-DSYIFARGNRI  211 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSSS
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCC-eEEEEecCCcc
Confidence            5689999999999999999999999 79999997764

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=97.59  E-value=4e-05  Score=75.59  Aligned_cols=42  Identities=14%  Similarity=0.068  Sum_probs=34.5

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecCh
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASI  252 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~  252 (496)
                      .|++++++++|..++.+++...|.+.+|+++.+|.||+++|.
T Consensus       215 ~gi~v~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vi~~~g~  256 (401)
T 3vrd_B          215 ALIEWHPGPDAAVVKTDTEAMTVETSFGETFKAAVINLIPPQ  256 (401)
T ss_dssp             CSEEEECTTTTCEEEEETTTTEEEETTSCEEECSEEEECCCE
T ss_pred             cCcEEEeCceEEEEEecccceEEEcCCCcEEEeeEEEEecCc
Confidence            678888888888888877777788888888888888887653

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.59  E-value=0.00017  Score=72.48  Aligned_cols=35  Identities=23%  Similarity=0.530  Sum_probs=32.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..+|+|||||.+|+.+|..|++.|. +|+|+|++++
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~  205 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGA-QVSVVEARER  205 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCC-eEEEEEcCCc
Confidence            4689999999999999999999999 7999998654

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.57  E-value=0.00043  Score=69.58  Aligned_cols=43  Identities=21%  Similarity=0.242  Sum_probs=35.7

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeC-CC--cEEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTE-DG--CVYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~-~G--~~~~ad~VI~A~p~~  253 (496)
                      .|++++++++|++|+.+++++.|.+. +|  +++.+|.||+|++..
T Consensus       225 ~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~  270 (464)
T 2a8x_A          225 LGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFA  270 (464)
T ss_dssp             HTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEE
T ss_pred             cCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCC
Confidence            58999999999999987777777654 56  679999999998754

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.54  E-value=5e-05  Score=77.21  Aligned_cols=39  Identities=26%  Similarity=0.447  Sum_probs=34.7

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIG   43 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~G   43 (496)
                      ...+|++|||||.+|+++|+.|++.|. +|+|+|+..+.+
T Consensus         3 ~~~~d~~iiG~G~~g~~~a~~l~~~~~-~v~~~e~~~~~~   41 (504)
T 1n4w_A            3 GGYVPAVVIGTGYGAAVSALRLGEAGV-QTLMLEMGQLWN   41 (504)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCCCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCC-cEEEEeCCCCCC
Confidence            356899999999999999999999999 699999987654

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.54  E-value=2.6e-05  Score=79.92  Aligned_cols=37  Identities=27%  Similarity=0.419  Sum_probs=32.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIG   43 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~G   43 (496)
                      ..+|+||||||.+|+.+|.+|++ |. +|+|||+....+
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~-~VlvLEaG~~~~   61 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KY-KVLVLERGSLPT   61 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TS-CEEEECSSBCGG
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CC-cEEEEecCCCcC
Confidence            35799999999999999999999 99 699999976543

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.54  E-value=0.00027  Score=71.57  Aligned_cols=35  Identities=23%  Similarity=0.345  Sum_probs=30.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHH----CCCCcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAE----NGIEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~----~G~~~V~vlEa~~~   41 (496)
                      ..+|+|||||.+|+-+|..|++    .|. +|+++++.++
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~-~V~~v~~~~~  218 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGT-EVIQLFPEKG  218 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTC-EEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCC-EEEEEecCcc
Confidence            4689999999999999999987    478 6999987654

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.54  E-value=0.00057  Score=69.24  Aligned_cols=41  Identities=15%  Similarity=0.076  Sum_probs=35.0

Q ss_pred             cceeeCceeEEEEEcCCceEEEeC--CC--cEEEcCEEEEecChH
Q 010995          213 NRLKLNKVVRELQHSRNGVTVKTE--DG--CVYEANYVILSASIG  253 (496)
Q Consensus       213 ~~i~~~~~V~~I~~~~~~v~V~~~--~G--~~~~ad~VI~A~p~~  253 (496)
                      ++|+++++|++|+.+++++.|++.  +|  +++.+|.||+|++..
T Consensus       229 V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~  273 (492)
T 3ic9_A          229 FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRK  273 (492)
T ss_dssp             SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCE
T ss_pred             cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCc
Confidence            789999999999998888887764  67  679999999999754

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.52  E-value=6e-05  Score=75.20  Aligned_cols=37  Identities=22%  Similarity=0.448  Sum_probs=32.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCC-cEEEEeeCCCCC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIE-DILILEASDRIG   43 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~-~V~vlEa~~~~G   43 (496)
                      ++|||||||.+|++||..|++.|.+ +|+|+|+++..+
T Consensus         1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~   38 (437)
T 4eqs_A            1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS   38 (437)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCC
Confidence            4699999999999999999999852 599999987654

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.50  E-value=0.00071  Score=68.51  Aligned_cols=36  Identities=19%  Similarity=0.514  Sum_probs=32.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..++|+|||||.+|+-+|..|++.|. +|+|+|++++
T Consensus       193 ~~~~vvVIGgG~ig~E~A~~l~~~g~-~Vtlv~~~~~  228 (490)
T 2bc0_A          193 DIKRVAVVGAGYIGVELAEAFQRKGK-EVVLIDVVDT  228 (490)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCC-eEEEEEcccc
Confidence            45789999999999999999999999 7999998654

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.49  E-value=5.1e-05  Score=73.85  Aligned_cols=34  Identities=26%  Similarity=0.476  Sum_probs=30.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..||+|||||++|++||..|++.| + |+|+|+++.
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g-~-V~lie~~~~   41 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY-E-VTVIDKEPV   41 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS-E-EEEECSSSS
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC-C-EEEEECCCC
Confidence            479999999999999999999999 4 999999774

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.48  E-value=0.00066  Score=68.26  Aligned_cols=42  Identities=7%  Similarity=0.062  Sum_probs=35.7

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .|++|+++++|++|+.+++.+.|.+.+ .++.+|.||+|++..
T Consensus       229 ~Gv~i~~~~~v~~i~~~~~~~~v~~~~-~~i~aD~Vv~a~G~~  270 (467)
T 1zk7_A          229 EGIEVLEHTQASQVAHMDGEFVLTTTH-GELRADKLLVATGRT  270 (467)
T ss_dssp             TTCEEETTCCEEEEEEETTEEEEEETT-EEEEESEEEECSCEE
T ss_pred             CCCEEEcCCEEEEEEEeCCEEEEEECC-cEEEcCEEEECCCCC
Confidence            589999999999999877777777764 589999999999764

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=97.46  E-value=7.2e-05  Score=74.49  Aligned_cols=34  Identities=26%  Similarity=0.438  Sum_probs=30.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCC--CCcEEEEeeCCC
Q 010995            7 SPVIIIGAGVSGISAGKILAENG--IEDILILEASDR   41 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G--~~~V~vlEa~~~   41 (496)
                      ++|||||||.+|++||+.|++.+  + +|||+|+++.
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~-~VtlI~~~~~   38 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDL-KITLISDRPY   38 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTC-EEEEECSSSE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCC-eEEEEcCCCC
Confidence            57999999999999999999876  6 7999999874

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.45  E-value=0.0011  Score=66.52  Aligned_cols=43  Identities=16%  Similarity=0.215  Sum_probs=36.3

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeC---CCc--EEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTE---DGC--VYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~---~G~--~~~ad~VI~A~p~~  253 (496)
                      .|++|+++++|++|+.+++++.|++.   +|+  ++.+|.||+|+...
T Consensus       329 ~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~  376 (463)
T 3s5w_A          329 PRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYE  376 (463)
T ss_dssp             CCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEE
T ss_pred             CCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCC
Confidence            58899999999999998888877765   664  48999999999754

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.44  E-value=0.00042  Score=69.81  Aligned_cols=35  Identities=23%  Similarity=0.543  Sum_probs=32.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..+|+|||||.+|+-+|..|++.|. +|+|+|++++
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtli~~~~~  211 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEFASE  211 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTC-EEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-cEEEEEcCCc
Confidence            4789999999999999999999999 7999998654

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.44  E-value=5.4e-05  Score=76.83  Aligned_cols=36  Identities=22%  Similarity=0.364  Sum_probs=32.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      .+++|||||||.+|++||..|++.++ +|||+|++++
T Consensus        41 ~KprVVIIGgG~AGl~~A~~L~~~~~-~VtLId~~~~   76 (502)
T 4g6h_A           41 DKPNVLILGSGWGAISFLKHIDTKKY-NVSIISPRSY   76 (502)
T ss_dssp             SSCEEEEECSSHHHHHHHHHSCTTTC-EEEEEESSSE
T ss_pred             CCCCEEEECCcHHHHHHHHHhhhCCC-cEEEECCCCC
Confidence            45689999999999999999999999 7999999864

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.44  E-value=6.3e-05  Score=77.41  Aligned_cols=37  Identities=35%  Similarity=0.501  Sum_probs=33.2

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCC-CCcEEEEeeCCC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENG-IEDILILEASDR   41 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G-~~~V~vlEa~~~   41 (496)
                      ...+|+||||||.||+++|.+|++.| . +|+||||.+.
T Consensus         4 ~~~yDyIVVGgG~AG~v~A~rLse~~~~-~VLllEaG~~   41 (577)
T 3q9t_A            4 GSHFDFVIVGGGTAGNTVAGRLAENPNV-TVLIVEAGIG   41 (577)
T ss_dssp             TCEEEEEEESCSHHHHHHHHHHTTSTTS-CEEEECSSCS
T ss_pred             CCcccEEEECCcHHHHHHHHHHHhCCCC-cEEEEecCCC
Confidence            35689999999999999999999998 7 6999999764

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.38  E-value=0.0011  Score=62.80  Aligned_cols=34  Identities=18%  Similarity=0.391  Sum_probs=31.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|+|||+|.+|+-.|..|++.|. +|+++++++
T Consensus       145 ~~~v~ViG~G~~g~e~A~~l~~~g~-~Vtlv~~~~  178 (320)
T 1trb_A          145 NQKVAVIGGGNTAVEEALYLSNIAS-EVHLIHRRD  178 (320)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSS-EEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCC-eEEEEEeCC
Confidence            4689999999999999999999999 799998754

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.37  E-value=8.2e-05  Score=76.55  Aligned_cols=35  Identities=31%  Similarity=0.626  Sum_probs=31.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-CCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAEN-GIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~-G~~~V~vlEa~~   40 (496)
                      ..+|+||||||.||+++|.+|++. +. +|+||||.+
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~-~VLlLEaG~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNI-SVLVIESGS   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTC-CEEEECSSC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCC-cEEEEecCC
Confidence            468999999999999999999975 78 699999976

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.35  E-value=0.00013  Score=74.14  Aligned_cols=38  Identities=32%  Similarity=0.510  Sum_probs=34.0

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      ...+|++|||||.+|+++|++|++.|. +|+|+|+....
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~-~v~~~e~~~~~   46 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQAGI-PTQIVEMGRSW   46 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSCCS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCC-cEEEEECCCCC
Confidence            346899999999999999999999999 69999998653

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.34  E-value=0.0008  Score=67.92  Aligned_cols=36  Identities=28%  Similarity=0.496  Sum_probs=32.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..++|+|||||.+|+-+|..|++.|. +|+|+|++++
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~  220 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETFVELGK-KVRMIERNDH  220 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHTTC-EEEEECCGGG
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCC-eEEEEEeCCc
Confidence            46789999999999999999999999 7999998653

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.24  E-value=0.00015  Score=74.44  Aligned_cols=37  Identities=22%  Similarity=0.428  Sum_probs=33.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-CCCcEEEEeeCCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAEN-GIEDILILEASDRI   42 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~-G~~~V~vlEa~~~~   42 (496)
                      ..+|++|||||.+|+++|++|++. |. +|+|||+....
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~-~v~~~e~g~~~   49 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAV-SVALVEAGPDD   49 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTS-CEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCC-CEEEEecCCcC
Confidence            458999999999999999999998 89 69999998654

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.23  E-value=0.00019  Score=74.28  Aligned_cols=37  Identities=27%  Similarity=0.431  Sum_probs=33.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHH-CCCCcEEEEeeCCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAE-NGIEDILILEASDRI   42 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~-~G~~~V~vlEa~~~~   42 (496)
                      ..+|+||||||.+|+++|++|++ .|. +|+|||+....
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~-~v~~~e~g~~~   60 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKI-KVLVIEKGFYE   60 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTC-CEEEEESSCCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCC-cEEEEecCCcc
Confidence            45899999999999999999999 799 69999997643

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.21  E-value=9.9e-05  Score=75.75  Aligned_cols=36  Identities=28%  Similarity=0.410  Sum_probs=32.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHH-CCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAE-NGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~-~G~~~V~vlEa~~~~   42 (496)
                      .+|+||||||.||+.+|.+|++ .|. +|+||||.+..
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~-~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDV-SVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTC-CEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCC-cEEEEecCCcc
Confidence            5899999999999999999998 689 69999997654

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.18  E-value=0.0021  Score=64.76  Aligned_cols=34  Identities=24%  Similarity=0.379  Sum_probs=31.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|+|||||.+|+-+|..|++.|. +|+|+++.+
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~  220 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGS-KTSLMIRHD  220 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-eEEEEEeCC
Confidence            4689999999999999999999999 799999754

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.06  E-value=0.0021  Score=61.22  Aligned_cols=34  Identities=26%  Similarity=0.543  Sum_probs=30.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|+|||+|.+|+-+|..|++.|. +|+++++++
T Consensus       173 ~~~v~vvG~G~~g~e~a~~l~~~g~-~v~~v~~~~  206 (338)
T 3itj_A          173 NKPLAVIGGGDSACEEAQFLTKYGS-KVFMLVRKD  206 (338)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSS-EEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC-EEEEEEcCC
Confidence            5679999999999999999999999 799998754

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.05  E-value=0.003  Score=60.15  Aligned_cols=34  Identities=21%  Similarity=0.311  Sum_probs=30.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|+|||+|.+|+-.|..|++.|. +|+++++++
T Consensus       152 ~~~v~viG~G~~g~e~a~~l~~~g~-~V~~v~~~~  185 (335)
T 2zbw_A          152 GKRVLIVGGGDSAVDWALNLLDTAR-RITLIHRRP  185 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSS-EEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCC-EEEEEEcCC
Confidence            4689999999999999999999999 799998754

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=96.98  E-value=0.0047  Score=62.25  Aligned_cols=32  Identities=19%  Similarity=0.407  Sum_probs=29.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEee
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEA   38 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa   38 (496)
                      ..+|+|||||.+|+-.|..|++.|. +|+|+++
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~  218 (483)
T 3dgh_A          187 PGKTLVVGAGYIGLECAGFLKGLGY-EPTVMVR  218 (483)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-EEEEEeC
Confidence            4679999999999999999999999 7999986

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=96.86  E-value=0.0027  Score=61.30  Aligned_cols=35  Identities=20%  Similarity=0.321  Sum_probs=31.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..+|+|||+|.+|+-.|..|++.|. +|++++++++
T Consensus       163 ~~~vvVvG~G~~g~e~A~~l~~~g~-~V~lv~~~~~  197 (360)
T 3ab1_A          163 GKRVVIVGGGDSALDWTVGLIKNAA-SVTLVHRGHE  197 (360)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSS-EEEEECSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCC-EEEEEEcCCC
Confidence            4689999999999999999999999 7999997653

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=96.83  E-value=0.0088  Score=60.34  Aligned_cols=33  Identities=18%  Similarity=0.388  Sum_probs=30.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ..+|+|||||.+|+-.|..|++.|. +|+++|+.
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~  217 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGIGL-DTTVMMRS  217 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-ceEEEEcC
Confidence            4679999999999999999999999 69999863

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=96.75  E-value=0.0069  Score=57.11  Aligned_cols=35  Identities=23%  Similarity=0.458  Sum_probs=30.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ...+|+|||+|.+|+-+|..|++.|. +|+++++++
T Consensus       153 ~~~~v~vvG~G~~~~e~a~~l~~~g~-~v~~~~~~~  187 (323)
T 3f8d_A          153 KNRVVAVIGGGDSALEGAEILSSYST-KVYLIHRRD  187 (323)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHSS-EEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCC-eEEEEEeCC
Confidence            35689999999999999999999999 699998754

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.64  E-value=0.0023  Score=52.52  Aligned_cols=39  Identities=26%  Similarity=0.461  Sum_probs=31.5

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      |+..++.+|+|+|+|-.|...|..|.++|+ +|+++|.++
T Consensus         1 m~~~~~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~   39 (141)
T 3llv_A            1 MTENGRYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSK   39 (141)
T ss_dssp             -----CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCH
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCH
Confidence            544456789999999999999999999999 699999853

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=96.52  E-value=0.002  Score=60.60  Aligned_cols=39  Identities=26%  Similarity=0.489  Sum_probs=30.8

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      |+++...+|+|||||..|-.-|..++.+|+ +|+|+|.++
T Consensus         1 Ma~p~~~~VaViGaG~MG~giA~~~a~~G~-~V~l~D~~~   39 (319)
T 3ado_A            1 MASPAAGDVLIVGSGLVGRSWAMLFASGGF-RVKLYDIEP   39 (319)
T ss_dssp             ------CEEEEECCSHHHHHHHHHHHHTTC-CEEEECSCH
T ss_pred             CCCCCCCeEEEECCcHHHHHHHHHHHhCCC-eEEEEECCH
Confidence            777788899999999999999999999999 699999743

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=96.42  E-value=0.0035  Score=66.21  Aligned_cols=35  Identities=17%  Similarity=0.300  Sum_probs=31.1

Q ss_pred             CCCEEEEC--CCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            6 RSPVIIIG--AGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIG--aGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..+|+|||  +|.+|+-+|..|++.|. +|+++++.++
T Consensus       523 g~~VvViG~ggG~~g~e~A~~L~~~g~-~Vtlv~~~~~  559 (690)
T 3k30_A          523 GKKVVVYDDDHYYLGGVVAELLAQKGY-EVSIVTPGAQ  559 (690)
T ss_dssp             SSEEEEEECSCSSHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             CCEEEEEcCCCCccHHHHHHHHHhCCC-eeEEEecccc
Confidence            45699999  99999999999999999 7999997553

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.41  E-value=0.0025  Score=62.14  Aligned_cols=36  Identities=22%  Similarity=0.348  Sum_probs=33.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      .++|+|||||.+|+-+|..|++.|. +|+|+|+++++
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtvv~~~~~~  181 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIIDSGT-PASIGIILEYP  181 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHHHTC-CEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-eEEEEEcCCcc
Confidence            4689999999999999999999999 69999998765

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=96.35  E-value=0.0024  Score=60.19  Aligned_cols=36  Identities=22%  Similarity=0.454  Sum_probs=32.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      .++|+|||||..|+-+|..|++.|. +|+|+|+++++
T Consensus       145 ~k~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~~~~  180 (312)
T 4gcm_A          145 NKRLFVIGGGDSAVEEGTFLTKFAD-KVTIVHRRDEL  180 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCS-EEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC-EEEEEeccccc
Confidence            4689999999999999999999999 79999987653

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.13  E-value=0.0058  Score=51.06  Aligned_cols=35  Identities=14%  Similarity=0.433  Sum_probs=31.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ...+|+|||+|..|...|..|.+.|+ +|++++++.
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~   52 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNE   52 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence            45689999999999999999999999 799999864

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.10  E-value=0.0058  Score=50.03  Aligned_cols=38  Identities=26%  Similarity=0.331  Sum_probs=30.7

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      |...++.+|+|+|+|-.|...|..|.+.|+ +|++++++
T Consensus         1 m~~~~~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~   38 (144)
T 2hmt_A            1 MGRIKNKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDIN   38 (144)
T ss_dssp             -----CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESC
T ss_pred             CCCCcCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            444456789999999999999999999999 69999875

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.08  E-value=0.0097  Score=48.70  Aligned_cols=35  Identities=23%  Similarity=0.415  Sum_probs=31.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .+.+|+|||+|-.|...|..|.+.|+ +|+++|+++
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~   40 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSR   40 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCH
Confidence            35689999999999999999999999 699999864

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=96.00  E-value=0.0065  Score=59.23  Aligned_cols=37  Identities=19%  Similarity=0.454  Sum_probs=34.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIG   43 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~G   43 (496)
                      .++|+|||||.+|+.+|..|++.|. +|+|+|+.+++.
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~~  181 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGY-QLDVVAPCEQVM  181 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-eEEEEecCcchh
Confidence            5789999999999999999999999 799999988654

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.94  E-value=0.0056  Score=59.26  Aligned_cols=35  Identities=29%  Similarity=0.485  Sum_probs=32.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      .+|+|||||.+|+-+|..|++.|. +|+|+|+++++
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~  178 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRGAMF  178 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTC-EEEEECSSSCC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCCee
Confidence            689999999999999999999999 79999987653

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.81  E-value=0.0078  Score=60.00  Aligned_cols=35  Identities=23%  Similarity=0.408  Sum_probs=32.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..++|.|||.|.+|+++|..|+++|+ +|++.|.++
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~-~V~~~D~~~   42 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGA-IVTVNDGKP   42 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEeCCc
Confidence            46789999999999999999999999 799999865

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=95.74  E-value=0.0083  Score=59.84  Aligned_cols=37  Identities=24%  Similarity=0.377  Sum_probs=33.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIG   43 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~G   43 (496)
                      ..+|+|||||.+|+-+|..|++.|. +|+|+|+++++.
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~l  203 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGA-KTHLFEMFDAPL  203 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCC-EEEEEEeCCchh
Confidence            4689999999999999999999999 799999988653

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=95.73  E-value=0.007  Score=56.96  Aligned_cols=34  Identities=21%  Similarity=0.475  Sum_probs=31.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .++|+|||||..|+-+|..|++.|. +|+|+|+.+
T Consensus       152 ~~~vvViGgG~ig~e~A~~l~~~G~-~Vt~v~~~~  185 (314)
T 4a5l_A          152 NKVLMVVGGGDAAMEEALHLTKYGS-KVIILHRRD  185 (314)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSS-EEEEECSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHhCC-eeeeecccc
Confidence            4689999999999999999999999 799999754

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.66  E-value=0.011  Score=47.98  Aligned_cols=34  Identities=32%  Similarity=0.542  Sum_probs=30.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|+|||+|..|...|..|.+.|+ +|++++++.
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~   37 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDK   37 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence            3579999999999999999999999 799999753

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=95.54  E-value=0.012  Score=46.27  Aligned_cols=35  Identities=17%  Similarity=0.302  Sum_probs=31.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC-CCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENG-IEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G-~~~V~vlEa~~   40 (496)
                      .+.+|+|+|+|..|...+..|.+.| + +|++++++.
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~-~v~~~~r~~   39 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNY-SVTVADHDL   39 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSE-EEEEEESCH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCc-eEEEEeCCH
Confidence            3568999999999999999999999 8 799998753

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=95.53  E-value=0.011  Score=59.16  Aligned_cols=37  Identities=32%  Similarity=0.496  Sum_probs=33.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIG   43 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~G   43 (496)
                      ..+|+|||||.+|+-+|..|++.|. +|+|+|+++++.
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~-~Vtlv~~~~~~l  202 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGS-EVTVVALEDRLL  202 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC-EEEEEEcCCccc
Confidence            4689999999999999999999999 799999987653

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.51  E-value=0.02  Score=47.57  Aligned_cols=34  Identities=15%  Similarity=0.304  Sum_probs=31.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      .+.+|+|+|+|-.|...|..|.+.|+ +|+++|++
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~   35 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQ-NVTVISNL   35 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECC
Confidence            35689999999999999999999999 69999985

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=95.36  E-value=0.015  Score=57.59  Aligned_cols=36  Identities=17%  Similarity=0.505  Sum_probs=33.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      ..+|+|||||.+|+-+|..|++.|. +|+|+|+.+++
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~-~Vtlv~~~~~~  184 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTAARV  184 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSST
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-EEEEEEeCCcc
Confidence            5789999999999999999999999 79999998765

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=95.36  E-value=0.015  Score=57.08  Aligned_cols=37  Identities=27%  Similarity=0.516  Sum_probs=34.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIG   43 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~G   43 (496)
                      .++|+|||+|.+|+-+|..|++.|. +|+|+|+.+++-
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtvv~~~~~~l  179 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLGL-SVTILEAGDELL  179 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCccc
Confidence            5789999999999999999999999 799999988764

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.28  E-value=0.012  Score=58.43  Aligned_cols=37  Identities=22%  Similarity=0.431  Sum_probs=33.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      +.++|.|||.|.+|+++|..|+++|+ +|++.|.++..
T Consensus         4 ~~~~v~viG~G~~G~~~a~~l~~~G~-~v~~~D~~~~~   40 (439)
T 2x5o_A            4 QGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRMTP   40 (439)
T ss_dssp             TTCCEEEECCHHHHHHHHHHHHTTTC-CCEEEESSSSC
T ss_pred             CCCEEEEEeecHHHHHHHHHHHhCCC-EEEEEECCCCc
Confidence            45789999999999999999999999 69999997654

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=95.27  E-value=0.015  Score=57.69  Aligned_cols=36  Identities=28%  Similarity=0.481  Sum_probs=32.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      ..+|+|||||..|+-.|..|++.|. +|+|+|+++++
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~~~l  182 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGL-HPTLIHRSDKI  182 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSCC
T ss_pred             CcEEEEECCccchhhhHHHHHhcCC-cceeeeeeccc
Confidence            4689999999999999999999999 79999987653

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=95.16  E-value=0.019  Score=57.17  Aligned_cols=37  Identities=27%  Similarity=0.550  Sum_probs=33.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      ..++|+|||||.+|+-+|..|++.|. +|+|+|+++++
T Consensus       147 ~~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~  183 (449)
T 3kd9_A          147 KVENVVIIGGGYIGIEMAEAFAAQGK-NVTMIVRGERV  183 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSST
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCC-eEEEEEcCCcc
Confidence            34689999999999999999999999 79999987643

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=95.08  E-value=0.017  Score=55.58  Aligned_cols=43  Identities=9%  Similarity=0.187  Sum_probs=35.0

Q ss_pred             cc-cceeeCceeEEEEEcCCceEEEeCCCcEEE-cCEEEEecChH
Q 010995          211 LD-NRLKLNKVVRELQHSRNGVTVKTEDGCVYE-ANYVILSASIG  253 (496)
Q Consensus       211 ~g-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~-ad~VI~A~p~~  253 (496)
                      .| ++++++++|.+|+.+++++.|.+.+|+.+. +|.||+|++..
T Consensus       227 ~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~  271 (369)
T 3d1c_A          227 GARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFD  271 (369)
T ss_dssp             TCCEEEECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCBC
T ss_pred             CCcEEEecCcEEEEEEecCCceEEEecCCeEeccCCceEEeeccC
Confidence            55 899999999999877777778888887665 59999998653

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.00  E-value=0.028  Score=48.22  Aligned_cols=34  Identities=29%  Similarity=0.354  Sum_probs=30.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAEN-GIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~-G~~~V~vlEa~~   40 (496)
                      ..+|+|||+|..|...|..|.+. |+ +|+++|++.
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~   73 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIRE   73 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCH
Confidence            45899999999999999999999 99 699999854

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=94.91  E-value=0.022  Score=53.45  Aligned_cols=35  Identities=17%  Similarity=0.336  Sum_probs=31.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      .++|+|||+|.+|+-.|..|++.|. +|++++++++
T Consensus       143 ~~~v~VvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~  177 (311)
T 2q0l_A          143 NKEVAVLGGGDTAVEEAIYLANICK-KVYLIHRRDG  177 (311)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHTTSS-EEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC-EEEEEeeCCc
Confidence            4789999999999999999999999 7999998664

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=94.84  E-value=0.027  Score=52.73  Aligned_cols=34  Identities=21%  Similarity=0.484  Sum_probs=30.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      .+.+|.|||+|..|.+.|..|+++|+ +|++++++
T Consensus        14 ~~~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~   47 (302)
T 1f0y_A           14 IVKHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQT   47 (302)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            34679999999999999999999999 79999874

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=94.84  E-value=0.027  Score=55.44  Aligned_cols=36  Identities=31%  Similarity=0.640  Sum_probs=33.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      ..+|+|||+|.+|+-+|..|++.|. +|+++|+.+++
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtvv~~~~~~  187 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGV-NVTLLEALPRV  187 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSST
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCC-eEEEEecCCch
Confidence            5789999999999999999999999 79999998876

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=94.80  E-value=0.025  Score=56.69  Aligned_cols=43  Identities=12%  Similarity=0.139  Sum_probs=34.8

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeC--CC--cEEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTE--DG--CVYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~--~G--~~~~ad~VI~A~p~~  253 (496)
                      .|++|+++++|++|+.+++++.|.+.  +|  +++.+|.||+|++..
T Consensus       229 ~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~  275 (468)
T 2qae_A          229 EKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRR  275 (468)
T ss_dssp             TCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEE
T ss_pred             CCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcc
Confidence            58999999999999987777777664  56  579999999998754

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=94.79  E-value=0.021  Score=58.29  Aligned_cols=36  Identities=19%  Similarity=0.240  Sum_probs=33.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..++|+|||+|.+|+-+|..|++.|. +|+|++++++
T Consensus       177 ~~krV~VIG~G~sgve~a~~l~~~~~-~Vtv~~r~~~  212 (540)
T 3gwf_A          177 AGRRVGVIGTGSTGQQVITSLAPEVE-HLTVFVRTPQ  212 (540)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTCS-EEEEEESSCC
T ss_pred             ccceEEEECCCchHHHHHHHHHhhCC-EEEEEECCCC
Confidence            45789999999999999999999999 7999999875

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=94.76  E-value=0.025  Score=56.59  Aligned_cols=36  Identities=19%  Similarity=0.222  Sum_probs=32.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..++|+|||+|.+|+-.|..|++.|. +|+|++++++
T Consensus       196 ~~k~VvVVG~G~sg~eiA~~l~~~g~-~V~li~~~~~  231 (464)
T 2xve_A          196 KDKTVLLVGSSYSAEDIGSQCYKYGA-KKLISCYRTA  231 (464)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTC-SEEEEECSSC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHHhCC-eEEEEEECCC
Confidence            35789999999999999999999999 6999998764

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=94.71  E-value=0.024  Score=53.13  Aligned_cols=35  Identities=31%  Similarity=0.348  Sum_probs=31.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..+|+|||+|.+|+-+|..|++.|. +|++++++++
T Consensus       144 ~~~v~VvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~  178 (310)
T 1fl2_A          144 GKRVAVIGGGNSGVEAAIDLAGIVE-HVTLLEFAPE  178 (310)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBS-EEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCC-EEEEEEeCcc
Confidence            4689999999999999999999999 7999998764

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=94.70  E-value=0.032  Score=51.74  Aligned_cols=33  Identities=21%  Similarity=0.315  Sum_probs=30.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ..+|.|||+|..|...|..|+++|+ +|++++++
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~   36 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDIN   36 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            5689999999999999999999999 79999874

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=94.60  E-value=0.03  Score=54.85  Aligned_cols=36  Identities=25%  Similarity=0.572  Sum_probs=33.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      .++|+|||+|.+|+-+|..|++.|. +|+++|+.+++
T Consensus       142 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtvv~~~~~~  177 (404)
T 3fg2_P          142 KKHVVVIGAGFIGLEFAATARAKGL-EVDVVELAPRV  177 (404)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSST
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCCcc
Confidence            5689999999999999999999999 79999998765

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=94.59  E-value=0.024  Score=57.91  Aligned_cols=37  Identities=30%  Similarity=0.471  Sum_probs=33.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      ..++|+|||+|.+|+-+|..|++.|. +|+|++++++.
T Consensus       190 ~~krV~VIG~G~sgve~a~~l~~~~~-~Vtv~~r~~~~  226 (549)
T 4ap3_A          190 TGKRVGVIGTGSSGIQSIPIIAEQAE-QLFVFQRSANY  226 (549)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBS-EEEEEESSCCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHhhCC-EEEEEECCCCc
Confidence            35789999999999999999999999 79999998753

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=94.59  E-value=0.029  Score=53.59  Aligned_cols=35  Identities=20%  Similarity=0.477  Sum_probs=32.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +..+|+|+|||-+|..+|..|...|.++|+|++++
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            56789999999999999999999998779999985

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=94.54  E-value=0.027  Score=56.83  Aligned_cols=36  Identities=31%  Similarity=0.609  Sum_probs=32.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      ..+|+|||||.+|+-.|..|++.|. +|+|+|+.+++
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~  233 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWARLGA-KVTVVEFLDTI  233 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-EEEEEeccccc
Confidence            5689999999999999999999999 79999987643

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=94.54  E-value=0.035  Score=55.32  Aligned_cols=37  Identities=19%  Similarity=0.377  Sum_probs=32.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..++|+|||||.+|+-+|..|.+.|.++|++++++++
T Consensus       263 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~  299 (456)
T 2vdc_G          263 AGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDR  299 (456)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCS
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCc
Confidence            3568999999999999999999999745999988654

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=94.51  E-value=0.023  Score=58.01  Aligned_cols=37  Identities=22%  Similarity=0.396  Sum_probs=33.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      ..++|+|||+|.+|+-.|..|++.+. +|+|++++++.
T Consensus       184 ~~krV~VIG~G~tgve~a~~la~~~~-~Vtv~~r~~~~  220 (545)
T 3uox_A          184 TGKRVGVIGTGATGVQIIPIAAETAK-ELYVFQRTPNW  220 (545)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHTTTBS-EEEEEESSCCC
T ss_pred             CCCeEEEECCCccHHHHHHHHHhhCC-EEEEEEcCCCc
Confidence            35789999999999999999999998 79999998753

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=94.51  E-value=0.032  Score=57.32  Aligned_cols=36  Identities=25%  Similarity=0.455  Sum_probs=32.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      .++|+|||||.+|+-+|..|++.|. +|+++|+++++
T Consensus       151 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~  186 (565)
T 3ntd_A          151 VEHATVVGGGFIGLEMMESLHHLGI-KTTLLELADQV  186 (565)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC-cEEEEEcCCcc
Confidence            4689999999999999999999999 79999997654

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=94.49  E-value=0.031  Score=53.45  Aligned_cols=35  Identities=17%  Similarity=0.437  Sum_probs=32.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +..+|+|+|||.+|..+|..|...|.++|+++|++
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~  221 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF  221 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            45689999999999999999999998789999985

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=94.49  E-value=0.036  Score=55.22  Aligned_cols=36  Identities=25%  Similarity=0.419  Sum_probs=33.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      ..+|+|||+|.+|+-+|..|++.|. +|+++|+.+++
T Consensus       147 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~  182 (452)
T 3oc4_A          147 SQTVAVIGAGPIGMEAIDFLVKMKK-TVHVFESLENL  182 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEEccCcc
Confidence            4689999999999999999999999 79999998865

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=94.46  E-value=0.027  Score=53.38  Aligned_cols=36  Identities=25%  Similarity=0.546  Sum_probs=32.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      ..+|+|||+|.+|+-+|..|++.|. +|+++++++++
T Consensus       159 ~~~v~VvG~G~~g~e~A~~l~~~g~-~V~lv~~~~~~  194 (333)
T 1vdc_A          159 NKPLAVIGGGDSAMEEANFLTKYGS-KVYIIHRRDAF  194 (333)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSS-EEEEECSSSSC
T ss_pred             CCeEEEECCChHHHHHHHHHHhcCC-eEEEEecCCcC
Confidence            5689999999999999999999999 79999987643

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=94.45  E-value=0.035  Score=55.53  Aligned_cols=36  Identities=33%  Similarity=0.539  Sum_probs=32.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      .++|+|||||.+|+-+|..|++.|. +|+++|+.+++
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~  207 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLMGV-QTHIIEMLDRA  207 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-EEEEEEeCCcC
Confidence            4689999999999999999999999 79999987643

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.38  E-value=0.036  Score=52.52  Aligned_cols=35  Identities=23%  Similarity=0.265  Sum_probs=31.2

Q ss_pred             CCCCEEEECCCHHHHH-HHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGIS-AGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~-aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .+++|.|||.|-+|++ +|..|.++|+ +|++.|.++
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~-~V~~~D~~~   38 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKEAGF-EVSGCDAKM   38 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHhCCC-EEEEEcCCC
Confidence            4678999999999997 7899999999 799999865

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=94.38  E-value=0.03  Score=53.19  Aligned_cols=35  Identities=17%  Similarity=0.363  Sum_probs=31.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..+|+|||+|.+|+-.|..|++.|. +|++++++++
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~~g~-~V~l~~~~~~  189 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTRFAR-SVTLVHRRDE  189 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTCS-EEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCC-eEEEEEcCCc
Confidence            5789999999999999999999999 7999998654

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=94.32  E-value=0.041  Score=53.24  Aligned_cols=35  Identities=20%  Similarity=0.343  Sum_probs=31.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ...+|+|||+|..|+.+|..|...|. +|++++.+.
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~  223 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRP  223 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence            45789999999999999999999999 799998743

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=94.29  E-value=0.032  Score=52.68  Aligned_cols=35  Identities=20%  Similarity=0.457  Sum_probs=31.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..+|+|||+|.+|+-+|..|++.|. +|++++++++
T Consensus       152 ~~~v~VvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~  186 (325)
T 2q7v_A          152 GKKVVVIGGGDAAVEEGMFLTKFAD-EVTVIHRRDT  186 (325)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCS-EEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC-EEEEEeCCCc
Confidence            4689999999999999999999999 7999998654

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=94.28  E-value=0.042  Score=48.59  Aligned_cols=35  Identities=17%  Similarity=0.324  Sum_probs=31.6

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      .+.+.|+|||||-.|...|..|.+.|. +|+|+...
T Consensus        29 L~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~   63 (223)
T 3dfz_A           29 LKGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPT   63 (223)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            357889999999999999999999999 69999764

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=94.23  E-value=0.037  Score=54.98  Aligned_cols=37  Identities=14%  Similarity=0.060  Sum_probs=33.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCc-EEEEeeCCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIED-ILILEASDRI   42 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~-V~vlEa~~~~   42 (496)
                      ..++|+|||+|.+|+-.|..|++.|. + |+|+++++.+
T Consensus       211 ~~k~VvVvG~G~sg~e~A~~l~~~~~-~~V~l~~r~~~~  248 (447)
T 2gv8_A          211 VGESVLVVGGASSANDLVRHLTPVAK-HPIYQSLLGGGD  248 (447)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSC-SSEEEECTTCCS
T ss_pred             CCCEEEEEccCcCHHHHHHHHHHHhC-CcEEEEeCCCCc
Confidence            35789999999999999999999998 7 9999987654

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=94.15  E-value=0.039  Score=55.61  Aligned_cols=37  Identities=19%  Similarity=0.213  Sum_probs=33.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHC---CCCcEEEEeeCCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAEN---GIEDILILEASDRIG   43 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~---G~~~V~vlEa~~~~G   43 (496)
                      ..+|+|||||..|+-+|..|++.   |. +|+|+|+++++.
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~-~Vtlv~~~~~~l  226 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGG-QVDLAYRGDMIL  226 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTC-EEEEEESSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcC-eEEEEEcCCCcc
Confidence            46899999999999999999999   99 799999988653

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=94.08  E-value=0.03  Score=51.20  Aligned_cols=34  Identities=18%  Similarity=0.399  Sum_probs=31.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.+.|+|||||-.|+..|..|.+.|. +|+|++..
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga-~VtViap~   45 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPD   45 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCC-EEEEEcCC
Confidence            56789999999999999999999999 79999864

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=94.04  E-value=0.052  Score=54.43  Aligned_cols=36  Identities=36%  Similarity=0.632  Sum_probs=33.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      ..+|+|||+|.+|+-.|..|++.|. +|+++|+.+++
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~  215 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWARLGA-EVTVLEAMDKF  215 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCc
Confidence            4689999999999999999999999 79999998765

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=93.98  E-value=0.041  Score=52.72  Aligned_cols=34  Identities=18%  Similarity=0.317  Sum_probs=31.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ...+|+|||+|..|+.+|..|...|. +|++++++
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~  216 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGA-KTTGYDVR  216 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            45789999999999999999999999 79999874

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=93.94  E-value=0.054  Score=54.66  Aligned_cols=37  Identities=22%  Similarity=0.469  Sum_probs=33.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIG   43 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~G   43 (496)
                      ..+|+|||||..|+-.|..|++.|. +|+|+|+.+++.
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~~~~l  218 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGV-PVTVVASQDHVL  218 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTC-CEEEECSSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEEcCCccc
Confidence            4789999999999999999999999 699999988764

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=93.89  E-value=0.057  Score=55.89  Aligned_cols=33  Identities=24%  Similarity=0.388  Sum_probs=30.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ..+|+|||||.+|+-+|..|++.|. +|+|+|++
T Consensus       286 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~  318 (598)
T 2x8g_A          286 PGKTLVIGASYVALECAGFLASLGG-DVTVMVRS  318 (598)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-EEEEEECC
Confidence            4589999999999999999999999 69999874

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=93.87  E-value=0.055  Score=55.06  Aligned_cols=35  Identities=17%  Similarity=0.274  Sum_probs=31.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..+++|||||..|+-.|..+++.|. +|||+++...
T Consensus       223 P~~lvIIGgG~IGlE~A~~~~~lG~-~VTii~~~~~  257 (542)
T 4b1b_A          223 PGKTLVVGASYVALECSGFLNSLGY-DVTVAVRSIV  257 (542)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTC-CEEEEESSCS
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCC-eEEEeccccc
Confidence            5789999999999999999999999 6999987543

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=93.86  E-value=0.052  Score=56.05  Aligned_cols=37  Identities=24%  Similarity=0.496  Sum_probs=33.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIG   43 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~G   43 (496)
                      ..+|+|||||.+|+-+|..|++.|. +|+++|+.+++.
T Consensus       187 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~l  223 (588)
T 3ics_A          187 PRHATVIGGGFIGVEMVENLRERGI-EVTLVEMANQVM  223 (588)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCccc
Confidence            5689999999999999999999999 799999987653

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=93.86  E-value=0.05  Score=50.45  Aligned_cols=34  Identities=24%  Similarity=0.458  Sum_probs=30.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..++|.|||+|..|-.-|..|+ +|+ +|+++++++
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~-~V~v~d~~~   44 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKH-EVVLQDVSE   44 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTS-EEEEECSCH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCC-EEEEEECCH
Confidence            3578999999999999999999 999 799999753

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=93.83  E-value=0.062  Score=53.10  Aligned_cols=34  Identities=24%  Similarity=0.434  Sum_probs=31.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|.|||+|..|.+-|..|+++|+ +|+++|.++
T Consensus        54 i~kVaVIGaG~MG~~IA~~la~aG~-~V~l~D~~~   87 (460)
T 3k6j_A           54 VNSVAIIGGGTMGKAMAICFGLAGI-ETFLVVRNE   87 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECcH
Confidence            3679999999999999999999999 799999865

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=93.77  E-value=0.039  Score=51.92  Aligned_cols=35  Identities=29%  Similarity=0.366  Sum_probs=31.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..+|+|||+|.+|+-.|..|++.|. +|++++++++
T Consensus       155 ~~~v~viG~G~~g~e~a~~l~~~g~-~V~~i~~~~~  189 (319)
T 3cty_A          155 GKRVVTIGGGNSGAIAAISMSEYVK-NVTIIEYMPK  189 (319)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTBS-EEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCC-cEEEEEcCCc
Confidence            4679999999999999999999999 7999998653

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=93.70  E-value=0.043  Score=55.73  Aligned_cols=35  Identities=31%  Similarity=0.348  Sum_probs=31.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      .++|+|||+|.+|+-+|..|++.|. +|+++|+.++
T Consensus       355 ~k~V~ViGgG~~g~E~A~~L~~~g~-~Vtlv~~~~~  389 (521)
T 1hyu_A          355 GKRVAVIGGGNSGVEAAIDLAGIVE-HVTLLEFAPE  389 (521)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHBS-EEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCC-EEEEEEeCcc
Confidence            4689999999999999999999999 7999998654

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=93.64  E-value=0.052  Score=54.12  Aligned_cols=36  Identities=17%  Similarity=0.407  Sum_probs=31.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHH--------------------HCCCCcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILA--------------------ENGIEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~--------------------~~G~~~V~vlEa~~~   41 (496)
                      ..+|+|||+|.+|+-+|..|+                    +.|.++|+|+++++.
T Consensus       145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~  200 (460)
T 1cjc_A          145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP  200 (460)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCCh
Confidence            578999999999999999999                    568746999998654

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=93.63  E-value=0.059  Score=50.88  Aligned_cols=33  Identities=30%  Similarity=0.532  Sum_probs=30.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .+|+|||+|..|.+.|..|+++|. +|+++.+++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGH-CVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTC-EEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCh
Confidence            579999999999999999999999 799998864

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=93.60  E-value=0.06  Score=47.61  Aligned_cols=32  Identities=19%  Similarity=0.350  Sum_probs=29.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      +|+|||+|-.|...|..|.++|+ +|+++|+++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKY-GVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTC-CEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence            59999999999999999999999 699999754

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=93.54  E-value=0.058  Score=50.73  Aligned_cols=33  Identities=33%  Similarity=0.559  Sum_probs=29.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .+|.|||+|-.|.+.|..|+++|. +|+++.+++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGE-DVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSC-CEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-eEEEEEcCc
Confidence            579999999999999999999999 799998754

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=93.52  E-value=0.073  Score=46.77  Aligned_cols=36  Identities=19%  Similarity=0.346  Sum_probs=31.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ...+|.|||+|..|.+.|..|+++|+ +|++++++..
T Consensus        18 ~~~~I~iiG~G~mG~~la~~l~~~g~-~V~~~~~~~~   53 (209)
T 2raf_A           18 QGMEITIFGKGNMGQAIGHNFEIAGH-EVTYYGSKDQ   53 (209)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTC-EEEEECTTCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHH
Confidence            35679999999999999999999999 7999998764

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=93.45  E-value=0.072  Score=53.32  Aligned_cols=36  Identities=36%  Similarity=0.618  Sum_probs=33.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAEN-GIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~-G~~~V~vlEa~~~~   42 (496)
                      ..+|+|||+|.+|+-+|..|++. |. +|+++|+.+++
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~~g~-~Vtlv~~~~~~  195 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADMWGI-DTTVVELADQI  195 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHCC-EEEEECSSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCC-cEEEEEccCcc
Confidence            57899999999999999999999 99 79999998765

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=93.42  E-value=0.068  Score=49.99  Aligned_cols=34  Identities=21%  Similarity=0.285  Sum_probs=30.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ++.+|.|||.|..|...|..|+++|+ +|++++++
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~   39 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLRAGL-STWGADLN   39 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence            45689999999999999999999999 79999874

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=93.25  E-value=0.091  Score=53.28  Aligned_cols=33  Identities=21%  Similarity=0.444  Sum_probs=30.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ..+|+|||||.+|+-.|..|++.|. +|+|+|++
T Consensus       210 ~~~vvVIGgG~ig~E~A~~l~~~G~-~Vtlv~~~  242 (519)
T 3qfa_A          210 PGKTLVVGASYVALECAGFLAGIGL-DVTVMVRS  242 (519)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCC-eEEEEecc
Confidence            4579999999999999999999999 69999974

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=93.24  E-value=0.086  Score=52.68  Aligned_cols=35  Identities=26%  Similarity=0.511  Sum_probs=31.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      +..+|.|||+|..|.+-|..|+++|+ +|+++|.+.
T Consensus         4 ~~~kVgVIGaG~MG~~IA~~la~aG~-~V~l~D~~~   38 (483)
T 3mog_A            4 NVQTVAVIGSGTMGAGIAEVAASHGH-QVLLYDISA   38 (483)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-eEEEEECCH
Confidence            35689999999999999999999999 699999753

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=93.18  E-value=0.081  Score=52.73  Aligned_cols=34  Identities=26%  Similarity=0.398  Sum_probs=30.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|.|||+|..|...|..|+++|+ +|+++|.++
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~~   70 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGI-SVVAVESDP   70 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence            3579999999999999999999999 799999754

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=93.15  E-value=0.079  Score=50.14  Aligned_cols=36  Identities=25%  Similarity=0.513  Sum_probs=31.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .+.+|+|||||..|.+.|+.|++.|+-+|+++|.+.
T Consensus        13 ~~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           13 MRKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            345899999999999999999999982399999864

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=93.15  E-value=0.094  Score=49.85  Aligned_cols=33  Identities=33%  Similarity=0.403  Sum_probs=30.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ..+|+|||+|..|.+.|..|+++|+ +|+++.+.
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~-~V~~~~r~   35 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGE-AINVLARG   35 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTC-CEEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCC-EEEEEECh
Confidence            4589999999999999999999999 79999874

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=93.13  E-value=0.09  Score=50.34  Aligned_cols=33  Identities=27%  Similarity=0.525  Sum_probs=30.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.+|.|||+|.-|.+.|..|+++|+ +|++++++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~-~V~l~~r~   61 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQ-KVRLWSYE   61 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTC-CEEEECSC
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            4589999999999999999999999 69999874

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=93.10  E-value=0.089  Score=49.39  Aligned_cols=35  Identities=20%  Similarity=0.303  Sum_probs=31.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ++.+|.|||.|..|...|..|+++|+ +|++++++.
T Consensus        20 ~m~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   54 (310)
T 3doj_A           20 HMMEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTL   54 (310)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSG
T ss_pred             cCCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            45689999999999999999999999 799998754

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=93.07  E-value=0.079  Score=49.46  Aligned_cols=35  Identities=20%  Similarity=0.358  Sum_probs=31.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..+|+|||+|.+|+-+|..|++.|. +|++++++++
T Consensus       147 ~~~v~viG~g~~~~e~a~~l~~~g~-~v~~~~~~~~  181 (315)
T 3r9u_A          147 NKEVAVLGGGDTALEEALYLANICS-KIYLIHRRDE  181 (315)
T ss_dssp             TSEEEEECCBHHHHHHHHHHHTTSS-EEEEECSSSS
T ss_pred             cCEEEEECCCHHHHHHHHHHHhhCC-EEEEEEeCCC
Confidence            4689999999999999999999999 7999998764

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=93.04  E-value=0.08  Score=49.67  Aligned_cols=32  Identities=28%  Similarity=0.507  Sum_probs=29.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      .+|.|||+|..|.+.|..|+++|+ +|++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~   35 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQW   35 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC-cEEEEECC
Confidence            479999999999999999999999 79999875

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=93.03  E-value=0.076  Score=50.10  Aligned_cols=34  Identities=18%  Similarity=0.424  Sum_probs=30.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      .+.+|.|||.|..|...|..|+++|+ +|++++++
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~   63 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRT   63 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCC
Confidence            34589999999999999999999999 79999875

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=92.92  E-value=0.091  Score=52.42  Aligned_cols=36  Identities=17%  Similarity=0.369  Sum_probs=33.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      .++|+|||+|.+|+-.|..|++.|. +|+++|+.+++
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~-~Vt~v~~~~~~  205 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGV-KTTLIYRGKEI  205 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEEcCCcc
Confidence            5689999999999999999999999 79999998764

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=92.92  E-value=0.091  Score=48.60  Aligned_cols=33  Identities=15%  Similarity=0.200  Sum_probs=30.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      +|.|||+|..|.+.|..|+++|+ +|++++++..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCC-CEEEEEcCcc
Confidence            59999999999999999999999 7999998753

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=92.84  E-value=0.094  Score=52.66  Aligned_cols=36  Identities=25%  Similarity=0.517  Sum_probs=33.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      ..+|+|||+|.+|+-.|..|++.|. +|+++|+.+++
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtli~~~~~~  226 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGV-KTTLLHRGDLI  226 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCC-eEEEEECCCcc
Confidence            5689999999999999999999999 79999998765

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=92.76  E-value=0.091  Score=52.50  Aligned_cols=33  Identities=33%  Similarity=0.605  Sum_probs=30.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ..+|+|||+|..|+..|..|+++|+ +|++++.+
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~-~V~~~d~~   40 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGH-DVFCLDVD   40 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            4579999999999999999999999 79999875

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=92.75  E-value=0.09  Score=47.59  Aligned_cols=34  Identities=32%  Similarity=0.566  Sum_probs=30.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ..+|+|||+|-.|..+|..|++.|+.+|+|++..
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d   64 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   64 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            4689999999999999999999998679999874

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=92.71  E-value=0.09  Score=51.59  Aligned_cols=35  Identities=14%  Similarity=0.228  Sum_probs=31.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ++.+|+|||.|..||..|..|+++|+ +|+.+|-+.
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~-~V~g~Did~   54 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGH-RVVGYDVNP   54 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCC-cEEEEECCH
Confidence            46789999999999999999999999 799998653

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=92.70  E-value=0.09  Score=48.93  Aligned_cols=33  Identities=21%  Similarity=0.259  Sum_probs=30.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .+|+|||+|--|.+.|..|+++|. +|+++.++.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~-~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLP-HTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCT-TCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCC-eEEEEEecc
Confidence            479999999999999999999999 799999863

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=92.69  E-value=0.15  Score=47.66  Aligned_cols=35  Identities=26%  Similarity=0.363  Sum_probs=31.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ...+|.|||.|..|...|..|+++|+ +|++++++.
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   42 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGK-RVAIWNRSP   42 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            45689999999999999999999999 699998753

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=92.65  E-value=0.1  Score=49.23  Aligned_cols=32  Identities=34%  Similarity=0.600  Sum_probs=28.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ..+|+|||+|.-|.+.|..|+++|+ +|+++ ++
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~-~~   50 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGH-EVILI-AR   50 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTC-EEEEE-CC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC-eEEEE-Ec
Confidence            4679999999999999999999999 79999 64

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=92.65  E-value=0.12  Score=46.72  Aligned_cols=35  Identities=20%  Similarity=0.340  Sum_probs=31.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ...+|.|||+|..|.+.|..|+++|+ +|++++++.
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~G~-~V~~~~r~~   52 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADLGH-EVTIGTRDP   52 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCh
Confidence            46789999999999999999999999 799998753

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=92.56  E-value=0.1  Score=50.83  Aligned_cols=34  Identities=26%  Similarity=0.418  Sum_probs=30.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ...+|+|||+|.+|+.+|..|...|. +|++++.+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~  204 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTR  204 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            35789999999999999999999999 79999864

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=92.54  E-value=0.11  Score=49.81  Aligned_cols=34  Identities=12%  Similarity=0.450  Sum_probs=31.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      |++|+|||||..|..+|+.+++.|+ +|++++..+
T Consensus         1 MK~I~ilGgg~~g~~~~~~Ak~~G~-~vv~vd~~~   34 (363)
T 4ffl_A            1 MKTICLVGGKLQGFEAAYLSKKAGM-KVVLVDKNP   34 (363)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            5779999999999999999999999 699999764

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=92.42  E-value=0.093  Score=48.62  Aligned_cols=33  Identities=18%  Similarity=0.343  Sum_probs=30.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .+|.|||.|..|...|..|+++|+ +|++++++.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~~   34 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGF-DVTVWNRNP   34 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTC-CEEEECSSG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence            479999999999999999999999 699998754

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=92.36  E-value=0.11  Score=48.79  Aligned_cols=39  Identities=33%  Similarity=0.606  Sum_probs=33.0

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCC-CcEEEEeeC
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGI-EDILILEAS   39 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~-~~V~vlEa~   39 (496)
                      |.+....+|+|||+|..|-+.|+.|+..|. .+|+++|..
T Consensus         1 m~~~~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~   40 (316)
T 1ldn_A            1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (316)
T ss_dssp             CTTTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCCCCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            666667799999999999999999998874 259999874

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=92.29  E-value=0.12  Score=51.33  Aligned_cols=33  Identities=18%  Similarity=0.447  Sum_probs=30.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .+|.|||+|..|+..|..|+++|+ +|++++.+.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~-~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGA-NVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCC-EEEEEECCH
Confidence            479999999999999999999999 799999863

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=92.26  E-value=0.13  Score=50.83  Aligned_cols=35  Identities=20%  Similarity=0.530  Sum_probs=31.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..++.|||.|..|+..|..|+++|+ +|++++.+..
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~-~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGH-EVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCCHH
Confidence            4579999999999999999999999 7999998653

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=92.20  E-value=0.13  Score=49.80  Aligned_cols=35  Identities=20%  Similarity=0.374  Sum_probs=31.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ...+|+|||+|..|+.+|..|...|. +|++++.+.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~~~d~~~  205 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRA  205 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            45789999999999999999999999 699998753

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=92.19  E-value=0.12  Score=48.68  Aligned_cols=35  Identities=20%  Similarity=0.552  Sum_probs=30.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      +.+|+|||+|..|.+.|..|+++|+.+|++++.++
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            46799999999999999999999972499999764

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=92.18  E-value=0.1  Score=48.64  Aligned_cols=34  Identities=15%  Similarity=0.117  Sum_probs=31.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      +.+|.|||.|..|...|..|+++|+ +|+++++++
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   48 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIRI   48 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTT-CEEEECSST
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            4589999999999999999999999 699998865

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=92.14  E-value=0.12  Score=48.75  Aligned_cols=36  Identities=25%  Similarity=0.466  Sum_probs=30.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCC-cEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIE-DILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~-~V~vlEa~~   40 (496)
                      .+.+|+|||+|-.|.+.|+.|++.|+- +|++++++.
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            345899999999999999999999971 399998753

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=92.13  E-value=0.13  Score=49.34  Aligned_cols=33  Identities=21%  Similarity=0.349  Sum_probs=30.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.+|.|||+|..|...|..|+++|+ +|++++++
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~-~V~~~~r~   36 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDID   36 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            3579999999999999999999999 79999874

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=92.12  E-value=0.14  Score=49.12  Aligned_cols=33  Identities=30%  Similarity=0.558  Sum_probs=30.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ..+|+|+|+|.+|+.++..|+..|. +|++++++
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~  199 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDIN  199 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            4789999999999999999999999 79999875

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=92.12  E-value=0.13  Score=48.62  Aligned_cols=35  Identities=26%  Similarity=0.503  Sum_probs=30.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      +.+|+|||||-.|.+.|..|++.|+-+|+++|...
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            35799999999999999999999972499999764

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=92.06  E-value=0.18  Score=44.46  Aligned_cols=34  Identities=21%  Similarity=0.270  Sum_probs=29.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      .+.+|.|||+|..|...|..|++.|+ +|++++++
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~-~V~~~~r~   60 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGF-KVVVGSRN   60 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            34679999999999999999999999 69999875

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=92.05  E-value=0.1  Score=49.11  Aligned_cols=35  Identities=23%  Similarity=0.366  Sum_probs=31.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..+|+|||+|.+|+-+|..|++.|. +|++++++++
T Consensus       154 ~~~v~vvG~g~~~~e~a~~l~~~~~-~v~~~~~~~~  188 (332)
T 3lzw_A          154 GRRVAILGGGDSAVDWALMLEPIAK-EVSIIHRRDK  188 (332)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTBS-EEEEECSSSS
T ss_pred             CCEEEEECCCHhHHHHHHHHHhhCC-eEEEEEecCc
Confidence            4689999999999999999999999 7999998654

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=92.03  E-value=0.12  Score=51.54  Aligned_cols=36  Identities=22%  Similarity=0.542  Sum_probs=30.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHC--------------------CCCcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAEN--------------------GIEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~--------------------G~~~V~vlEa~~~   41 (496)
                      ..+|+|||+|.+|+-+|..|++.                    |.++|+|+++++.
T Consensus       147 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~  202 (456)
T 1lqt_A          147 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP  202 (456)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCCh
Confidence            46899999999999999999974                    5447999998754

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=91.99  E-value=0.17  Score=47.66  Aligned_cols=35  Identities=11%  Similarity=0.542  Sum_probs=30.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      +.+|+|||||-.|.+.|+.|+..|+-+|+++|...
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            46899999999999999999999972499999753

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=91.94  E-value=0.058  Score=44.15  Aligned_cols=33  Identities=6%  Similarity=0.227  Sum_probs=30.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ..+|+|||+|-.|...|..|++.|. +|++++++
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~-~v~v~~r~   53 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQY-KVTVAGRN   53 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTC-EEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCC
Confidence            5689999999999999999999999 59999875

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=91.94  E-value=0.15  Score=46.68  Aligned_cols=34  Identities=18%  Similarity=0.168  Sum_probs=30.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.+.|+|+|+|-.|.++|+.|++.|. +|+|+.++
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~-~V~v~~R~  151 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRT  151 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEECC
Confidence            45689999999999999999999998 79999775

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=91.86  E-value=0.14  Score=47.36  Aligned_cols=33  Identities=27%  Similarity=0.384  Sum_probs=30.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .+|.|||.|..|...|..|+++|+ +|++++++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~   34 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSP   34 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence            469999999999999999999999 799998754

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=91.85  E-value=0.11  Score=48.83  Aligned_cols=36  Identities=19%  Similarity=0.248  Sum_probs=29.8

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.+.+|.|||.|..|...|..|+++|+.+|++++++
T Consensus        22 ~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           22 SNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             ---CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            345689999999999999999999998349999874

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=91.80  E-value=0.18  Score=49.27  Aligned_cols=35  Identities=29%  Similarity=0.534  Sum_probs=31.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .+.+|+|||.|-.|...|..|.+.|+ +|+|+|.+.
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~   37 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDP   37 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCH
Confidence            35679999999999999999999999 699999864

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=91.79  E-value=0.19  Score=47.68  Aligned_cols=35  Identities=26%  Similarity=0.276  Sum_probs=31.3

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +...+|.|||.|..|-+.|..|+++|+ +|++++++
T Consensus         6 ~~~~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~   40 (341)
T 3ktd_A            6 DISRPVCILGLGLIGGSLLRDLHAANH-SVFGYNRS   40 (341)
T ss_dssp             CCSSCEEEECCSHHHHHHHHHHHHTTC-CEEEECSC
T ss_pred             CCCCEEEEEeecHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            445689999999999999999999999 69999864

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=91.69  E-value=0.17  Score=47.45  Aligned_cols=35  Identities=29%  Similarity=0.624  Sum_probs=30.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +..+|+|||+|..|.+.|+.|+++|+.+|+++|..
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            45689999999999999999999998349999875

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=91.63  E-value=0.18  Score=45.89  Aligned_cols=34  Identities=26%  Similarity=0.412  Sum_probs=30.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .++|+|||+|-+|-++|+.|++.|. +|+|+.++.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~-~v~V~nRt~  151 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGL-QVSVLNRSS  151 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            5689999999999999999999996 799998764

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=91.62  E-value=0.18  Score=53.18  Aligned_cols=34  Identities=24%  Similarity=0.395  Sum_probs=31.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|.|||+|..|...|..|+++|+ +|++++.++
T Consensus       312 ~~kV~VIGaG~MG~~iA~~la~aG~-~V~l~D~~~  345 (725)
T 2wtb_A          312 IKKVAIIGGGLMGSGIATALILSNY-PVILKEVNE  345 (725)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTTC-CEEEECSSH
T ss_pred             CcEEEEEcCCHhhHHHHHHHHhCCC-EEEEEECCH
Confidence            4579999999999999999999999 699999764

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=91.56  E-value=0.15  Score=54.07  Aligned_cols=35  Identities=20%  Similarity=0.237  Sum_probs=31.6

Q ss_pred             CCCCEEEEC--CCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIG--AGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIG--aGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..++|+|||  ||.+|+-+|..|++.|. +|+|+|+++
T Consensus       527 ~gk~VvVIG~GgG~~g~e~A~~l~~~G~-~Vtlv~~~~  563 (729)
T 1o94_A          527 IGKRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGVH  563 (729)
T ss_dssp             CCSEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             CCCeEEEEcCCCCchHHHHHHHHHHcCC-EEEEEeccc
Confidence            346899999  99999999999999999 799999865

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=91.52  E-value=0.17  Score=47.13  Aligned_cols=35  Identities=20%  Similarity=0.217  Sum_probs=31.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ..++|+|||+|-+|.++|+.|++.|.++|+|+.++
T Consensus       140 ~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~  174 (297)
T 2egg_A          140 DGKRILVIGAGGGARGIYFSLLSTAAERIDMANRT  174 (297)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSS
T ss_pred             CCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            45689999999999999999999997469999875

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=91.41  E-value=0.16  Score=47.73  Aligned_cols=39  Identities=26%  Similarity=0.498  Sum_probs=30.4

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCC-CcEEEEeeC
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGI-EDILILEAS   39 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~-~~V~vlEa~   39 (496)
                      |....+.+|+|||||-.|.+.|+.|+.+|. .+|.++|..
T Consensus         1 m~~m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~   40 (317)
T 3d0o_A            1 MNKFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD   40 (317)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            544456789999999999999999999884 258899864

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=91.37  E-value=0.2  Score=47.24  Aligned_cols=35  Identities=23%  Similarity=0.488  Sum_probs=31.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +..+|+|||+|-.|-.+|..|+..|+.+++|++..
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D   67 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG   67 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             hCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence            36789999999999999999999999889999863

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=91.33  E-value=0.17  Score=45.84  Aligned_cols=34  Identities=32%  Similarity=0.514  Sum_probs=31.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ..+|+|||+|-.|-.+|..|++.|+.+++|++..
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            5789999999999999999999998789999864

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=91.28  E-value=0.16  Score=49.70  Aligned_cols=33  Identities=24%  Similarity=0.485  Sum_probs=29.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|+|||+|..|+..|..|++ |+ +|++++.+.
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~-G~-~V~~~D~~~   68 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ-NH-EVVALDIVQ   68 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TS-EEEEECSCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHc-CC-eEEEEecCH
Confidence            3579999999999999999998 99 799999753

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=91.24  E-value=0.2  Score=48.23  Aligned_cols=34  Identities=32%  Similarity=0.584  Sum_probs=30.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ...+|+|+|+|..|+.+|..|+..|. +|++++++
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~  198 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGA-QVTILDVN  198 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            35789999999999999999999999 79999875

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=91.23  E-value=0.19  Score=47.18  Aligned_cols=35  Identities=37%  Similarity=0.531  Sum_probs=29.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC-CcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGI-EDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~-~~V~vlEa~   39 (496)
                      ++.+|+|||+|-.|.+.|+.|+..|. .+|+++|..
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~   41 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVF   41 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            35689999999999999999999985 249999875

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=91.20  E-value=0.12  Score=48.59  Aligned_cols=31  Identities=23%  Similarity=0.386  Sum_probs=28.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHHC-----C-CCcEEEEee
Q 010995            7 SPVIIIGAGVSGISAGKILAEN-----G-IEDILILEA   38 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~-----G-~~~V~vlEa   38 (496)
                      .+|.|||+|..|.+.|..|+++     | + +|+++++
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~-~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLL-EVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSE-EEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCC-CEEEEEc
Confidence            3799999999999999999999     9 9 7999976

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=91.18  E-value=0.15  Score=46.76  Aligned_cols=36  Identities=14%  Similarity=0.157  Sum_probs=31.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..++|+|||+|-+|-++|+.|++.|.++|+|+.++.
T Consensus       116 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  151 (277)
T 3don_A          116 EDAYILILGAGGASKGIANELYKIVRPTLTVANRTM  151 (277)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            457899999999999999999999985599997753

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=91.16  E-value=0.18  Score=47.17  Aligned_cols=32  Identities=22%  Similarity=0.297  Sum_probs=29.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .+|+|||+|-.|.+.|..|+ +|. +|+++.++.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~-~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYH-DVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTS-EEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCC-ceEEEECCH
Confidence            47999999999999999999 999 799998753

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=91.15  E-value=0.24  Score=46.10  Aligned_cols=34  Identities=29%  Similarity=0.431  Sum_probs=30.7

Q ss_pred             CCCEEEEC-CCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIG-AGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIG-aGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|.||| +|..|.+.|..|++.|+ +|++++++.
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~-~V~~~~~~~   55 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGY-PISILDRED   55 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTC
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCC-eEEEEECCc
Confidence            45899999 99999999999999999 699998754

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=91.14  E-value=0.17  Score=50.34  Aligned_cols=35  Identities=20%  Similarity=0.418  Sum_probs=31.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CC-CcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAEN-GI-EDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~-G~-~~V~vlEa~~~   41 (496)
                      ..+|+|||+|..|+..|..|+++ |+ + |++++.+..
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~-V~~~D~~~~   54 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEK-VLGFQRNSK   54 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCE-EEEECCCCT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCe-EEEEECChh
Confidence            45799999999999999999999 98 7 999998754

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=91.13  E-value=0.15  Score=46.99  Aligned_cols=35  Identities=26%  Similarity=0.482  Sum_probs=31.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +..+|+|||+|-.|-.+|..|++.|+.+++|+|..
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D   69 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYD   69 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            45789999999999999999999998789999863

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=91.12  E-value=0.19  Score=47.62  Aligned_cols=33  Identities=24%  Similarity=0.486  Sum_probs=30.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ..+|.|||+|..|.+.|..|+++|+ +|+++.++
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~-~V~~~~r~   46 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGE-EVILWARR   46 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            4679999999999999999999999 79999864

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=91.07  E-value=0.21  Score=46.83  Aligned_cols=34  Identities=29%  Similarity=0.424  Sum_probs=29.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCC-cEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIE-DILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~-~V~vlEa~   39 (496)
                      ..+|.|||.|..|.+.|..|+++|+. +|++++++
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~   67 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   67 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECC
Confidence            36899999999999999999999982 38888764

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=91.05  E-value=0.25  Score=45.22  Aligned_cols=35  Identities=20%  Similarity=0.283  Sum_probs=30.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.++|+|+|+|-+|-++|+.|++.|.++|+|+.++
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~  153 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRD  153 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            46789999999999999999999996469998764

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=91.04  E-value=0.16  Score=46.57  Aligned_cols=34  Identities=21%  Similarity=0.267  Sum_probs=30.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.++|+|+|+|-+|.+.|+.|++.|. +|+|+.++
T Consensus       118 ~~~~vlvlGaGg~g~a~a~~L~~~G~-~v~v~~R~  151 (272)
T 1p77_A          118 PNQHVLILGAGGATKGVLLPLLQAQQ-NIVLANRT  151 (272)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTC-EEEEEESS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            45689999999999999999999998 79999875

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=91.01  E-value=0.11  Score=56.96  Aligned_cols=36  Identities=17%  Similarity=0.202  Sum_probs=32.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      ..+|+|||+|..|+-+|..|++.|. +|+|+|+++++
T Consensus       284 gk~vvViGgG~~g~E~A~~L~~~G~-~Vtvv~~~~~~  319 (965)
T 2gag_A          284 GARIAVATTNDSAYELVRELAATGG-VVAVIDARSSI  319 (965)
T ss_dssp             CSSEEEEESSTTHHHHHHHHGGGTC-CSEEEESCSSC
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHcCC-cEEEEECCCcc
Confidence            4689999999999999999999999 69999998764

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=91.00  E-value=0.18  Score=50.10  Aligned_cols=34  Identities=18%  Similarity=0.345  Sum_probs=31.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.+.|+|||+|-+|+..|..|.+.|. +|+|++..
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga-~V~vi~~~   44 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALT   44 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcC-EEEEEcCC
Confidence            46789999999999999999999999 79999874

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=91.00  E-value=0.28  Score=44.31  Aligned_cols=32  Identities=28%  Similarity=0.558  Sum_probs=29.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +|+|||+|-+|-++++.|.+.|.++|+|+.++
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~  141 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRT  141 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESC
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            89999999999999999999998569999875

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=90.97  E-value=0.23  Score=45.74  Aligned_cols=35  Identities=20%  Similarity=0.407  Sum_probs=31.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.++|+|+|+|-+|-++|+.|++.|.++|+|+.++
T Consensus       126 ~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~  160 (283)
T 3jyo_A          126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD  160 (283)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECC
Confidence            46789999999999999999999998559999765

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=90.96  E-value=0.23  Score=45.70  Aligned_cols=35  Identities=17%  Similarity=0.331  Sum_probs=31.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ..++|+|||+|-+|-++|+.|++.|.++|+|+.++
T Consensus       121 ~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt  155 (282)
T 3fbt_A          121 KNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRN  155 (282)
T ss_dssp             TTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESC
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            46789999999999999999999998569999775

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=90.95  E-value=0.12  Score=45.64  Aligned_cols=32  Identities=25%  Similarity=0.325  Sum_probs=28.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEE-Eee
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILI-LEA   38 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~v-lEa   38 (496)
                      +.+|.|||+|..|.+.|..|+++|+ +|++ +++
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~-~V~~v~~r   55 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQI-PAIIANSR   55 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTC-CEEEECTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            4689999999999999999999999 6988 654

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=90.95  E-value=0.28  Score=46.00  Aligned_cols=33  Identities=15%  Similarity=0.250  Sum_probs=30.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .+|.|||+|..|...|..|++.|+ +|++++++.
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~~   63 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRTA   63 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCCH
Confidence            679999999999999999999999 699998753

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=90.93  E-value=0.18  Score=55.54  Aligned_cols=35  Identities=20%  Similarity=0.398  Sum_probs=31.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|+|||||..|+-+|..|++.|.++|+|+++++
T Consensus       332 ~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          332 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            34899999999999999999999964699999876

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=90.86  E-value=0.25  Score=46.20  Aligned_cols=35  Identities=23%  Similarity=0.294  Sum_probs=31.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.++|+|+|+|-+|-++|+.|++.|.++|+|+.++
T Consensus       153 ~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          153 IGKKMTICGAGGAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             cCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence            46789999999999999999999998569999876

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=90.81  E-value=0.24  Score=49.28  Aligned_cols=35  Identities=14%  Similarity=0.266  Sum_probs=31.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .+.+|.|||.|..|...|..|+++|+ +|++++++.
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~   37 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTV   37 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSST
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            45689999999999999999999999 699999864

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=90.78  E-value=0.16  Score=50.22  Aligned_cols=31  Identities=23%  Similarity=0.427  Sum_probs=29.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +|.|||+|..|+..|..|+++|+ +|++++++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~-~V~~~d~~   32 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVS   32 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            59999999999999999999999 79999875

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=90.73  E-value=0.18  Score=51.33  Aligned_cols=35  Identities=23%  Similarity=0.477  Sum_probs=32.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      .++|+|||+|.+|+-.|..|++.|. +|+++++++.
T Consensus       186 gk~V~VIG~G~sg~e~a~~l~~~~~-~vtv~~r~~~  220 (542)
T 1w4x_A          186 GQRVGVIGTGSSGIQVSPQIAKQAA-ELFVFQRTPH  220 (542)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBS-EEEEEESSCC
T ss_pred             CCEEEEECCCccHHHHHHHHhhcCc-eEEEEEcCCc
Confidence            5789999999999999999999999 7999998764

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=90.70  E-value=0.25  Score=48.37  Aligned_cols=33  Identities=33%  Similarity=0.676  Sum_probs=30.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC--CcEEEEe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGI--EDILILE   37 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~--~~V~vlE   37 (496)
                      +..+|+|+|||-+|.++|+.|.+.|.  ++|+|++
T Consensus       185 ~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd  219 (439)
T 2dvm_A          185 SEITLALFGAGAAGFATLRILTEAGVKPENVRVVE  219 (439)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence            45789999999999999999999998  5799998

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=90.67  E-value=0.24  Score=47.75  Aligned_cols=34  Identities=29%  Similarity=0.583  Sum_probs=31.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ...+|+|||+|..|+.+|..|+..|. +|++++++
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~  200 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGA-TVTVLDIN  200 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            45789999999999999999999999 79999874

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=90.66  E-value=0.23  Score=47.55  Aligned_cols=33  Identities=18%  Similarity=0.333  Sum_probs=30.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.+|.|||.|..|...|..|+++|+ +|++++++
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~   54 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLN   54 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            4689999999999999999999999 79999875

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=90.64  E-value=0.3  Score=45.56  Aligned_cols=35  Identities=23%  Similarity=0.460  Sum_probs=31.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ..++|+|+|+|-+|-++|+.|++.|.++|+|+.++
T Consensus       147 ~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt  181 (312)
T 3t4e_A          147 RGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRK  181 (312)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            46789999999999999999999998569999876

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=90.64  E-value=0.16  Score=48.73  Aligned_cols=41  Identities=37%  Similarity=0.581  Sum_probs=34.5

Q ss_pred             CCCCEEEECC-CHHHHHHHHHHHHCCCC--cEEEEeeCC-CCCeE
Q 010995            5 SRSPVIIIGA-GVSGISAGKILAENGIE--DILILEASD-RIGGR   45 (496)
Q Consensus         5 ~~~dVvIIGa-GiaGL~aA~~L~~~G~~--~V~vlEa~~-~~GGr   45 (496)
                      ...+|+|||| |.+|+.|+..+...|..  +|+++|.+. .-||+
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~g~~  257 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGGP  257 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTTCSC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccccCCc
Confidence            3678999999 99999999999999972  499999875 44664

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=90.57  E-value=0.26  Score=45.06  Aligned_cols=34  Identities=21%  Similarity=0.334  Sum_probs=30.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      .++|+|||+|-+|-++++.|++.|.++|+|+.++
T Consensus       119 ~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt  152 (271)
T 1npy_A          119 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN  152 (271)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            4689999999999999999999997569999775

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=90.50  E-value=0.18  Score=47.77  Aligned_cols=30  Identities=33%  Similarity=0.468  Sum_probs=28.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEee
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEA   38 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa   38 (496)
                      +|.|||+|..|.+.|..|+++|+ +|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~-~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC-EEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC-eEEEEEc
Confidence            59999999999999999999999 7999987

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=90.50  E-value=0.14  Score=47.35  Aligned_cols=34  Identities=15%  Similarity=0.218  Sum_probs=29.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..++|+|||+|.+|+-.|..|++.|  +|+++++++
T Consensus       140 ~~~~v~vvG~G~~~~e~a~~l~~~g--~v~~v~~~~  173 (297)
T 3fbs_A          140 DQGKIGVIAASPMAIHHALMLPDWG--ETTFFTNGI  173 (297)
T ss_dssp             TTCEEEEECCSTTHHHHHHHGGGTS--EEEEECTTT
T ss_pred             cCCEEEEEecCccHHHHHHHhhhcC--cEEEEECCC
Confidence            3578999999999999999999998  499998754

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=90.41  E-value=0.23  Score=46.47  Aligned_cols=32  Identities=28%  Similarity=0.538  Sum_probs=28.9

Q ss_pred             CEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeCC
Q 010995            8 PVIIIGAGVSGISAGKILAEN--GIEDILILEASD   40 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~~   40 (496)
                      +|+|||+|..|.+.|..|++.  |. +|+++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~-~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLAR-ELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCS-EEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCC-EEEEEeCCh
Confidence            699999999999999999996  67 799999864

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=90.38  E-value=0.2  Score=50.05  Aligned_cols=33  Identities=24%  Similarity=0.439  Sum_probs=29.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAEN--GIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~   39 (496)
                      +.+|.|||+|..|+..|..|+++  |+ +|++++.+
T Consensus         9 ~mkI~VIG~G~vG~~~A~~La~~g~g~-~V~~~D~~   43 (481)
T 2o3j_A            9 VSKVVCVGAGYVGGPTCAMIAHKCPHI-TVTVVDMN   43 (481)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTS-EEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCC-EEEEEECC
Confidence            35899999999999999999998  78 79999874

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=90.36  E-value=0.2  Score=46.71  Aligned_cols=34  Identities=18%  Similarity=0.378  Sum_probs=30.0

Q ss_pred             CCCCEEEECCC-HHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAG-VSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaG-iaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ..++|+|||+| +.|-.+|..|...|. +|+|++++
T Consensus       176 ~gk~vvVIG~G~iVG~~~A~~L~~~gA-tVtv~nR~  210 (320)
T 1edz_A          176 YGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVN  210 (320)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSS
T ss_pred             CCCEEEEECCCcchHHHHHHHHHHCCC-EEEEEeCc
Confidence            56789999999 779999999999999 69998654

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=90.34  E-value=0.22  Score=46.67  Aligned_cols=32  Identities=28%  Similarity=0.423  Sum_probs=29.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCC--CCcEEEEeeC
Q 010995            7 SPVIIIGAGVSGISAGKILAENG--IEDILILEAS   39 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G--~~~V~vlEa~   39 (496)
                      .+|+|||+|-.|.+.|..|+++|  . +|++++.+
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~-~V~l~d~~   35 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVAD-DYVFIDAN   35 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCS-EEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCC-EEEEEcCC
Confidence            46999999999999999999999  6 79999875

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=90.34  E-value=0.23  Score=49.59  Aligned_cols=34  Identities=21%  Similarity=0.357  Sum_probs=30.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ++.+|.|||+|..|.+.|..|+++|+ +|++++++
T Consensus        14 ~~~~IgvIGlG~MG~~lA~~La~~G~-~V~v~~r~   47 (480)
T 2zyd_A           14 SKQQIGVVGMAVMGRNLALNIESRGY-TVSIFNRS   47 (480)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHTTTC-CEEEECSS
T ss_pred             CCCeEEEEccHHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            46789999999999999999999999 69999875

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=90.34  E-value=0.23  Score=46.79  Aligned_cols=35  Identities=29%  Similarity=0.557  Sum_probs=30.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC-CcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGI-EDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~-~~V~vlEa~   39 (496)
                      ...+|+|||+|..|.+.|+.|+..|. .+|+++|..
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~   39 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVN   39 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence            45689999999999999999999986 259999864

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=90.30  E-value=0.28  Score=45.14  Aligned_cols=35  Identities=20%  Similarity=0.293  Sum_probs=30.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ..++|+|+|+|-+|-+.|+.|++.|.++|+|+.++
T Consensus       125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~  159 (281)
T 3o8q_A          125 KGATILLIGAGGAARGVLKPLLDQQPASITVTNRT  159 (281)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESS
T ss_pred             cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECC
Confidence            46789999999999999999999996469999775

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=90.22  E-value=0.32  Score=44.85  Aligned_cols=33  Identities=21%  Similarity=0.378  Sum_probs=29.9

Q ss_pred             CCCEEEECC-CHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGA-GVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGa-GiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.+|.|||+ |..|.+.|..|+++|+ +|++++++
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r~   44 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAH-HLAAIEIA   44 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSS-EEEEECCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            358999999 9999999999999999 79999864

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=90.10  E-value=0.27  Score=51.73  Aligned_cols=34  Identities=24%  Similarity=0.385  Sum_probs=31.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|.|||+|..|...|..|+++|+ +|+++|.+.
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~aG~-~V~l~D~~~  347 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASKGT-PILMKDINE  347 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSH
T ss_pred             CCEEEEECCChhhHHHHHHHHhCCC-EEEEEECCH
Confidence            4579999999999999999999999 699999764

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=90.08  E-value=0.24  Score=46.25  Aligned_cols=33  Identities=21%  Similarity=0.469  Sum_probs=28.9

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC-CcEEEEeeCC
Q 010995            8 PVIIIGAGVSGISAGKILAENGI-EDILILEASD   40 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~-~~V~vlEa~~   40 (496)
                      +|+|||||..|.+.|+.|+.+|+ .+|+++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            69999999999999999999997 1399998753

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=89.96  E-value=0.22  Score=49.66  Aligned_cols=33  Identities=21%  Similarity=0.370  Sum_probs=30.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAEN--GIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~   39 (496)
                      +.+|.|||+|..|+..|..|+++  |+ +|++++++
T Consensus         5 ~mkI~VIG~G~mG~~lA~~La~~g~G~-~V~~~d~~   39 (467)
T 2q3e_A            5 IKKICCIGAGYVGGPTCSVIAHMCPEI-RVTVVDVN   39 (467)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTS-EEEEECSC
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCCC-EEEEEECC
Confidence            45799999999999999999999  89 79999875

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=89.96  E-value=0.34  Score=48.60  Aligned_cols=34  Identities=18%  Similarity=0.215  Sum_probs=31.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|.|||.|..|...|..|+++|+ +|++++++.
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~-~V~v~dr~~   43 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGF-TVCAYNRTQ   43 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            5689999999999999999999999 699998854

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=89.93  E-value=0.27  Score=46.93  Aligned_cols=33  Identities=33%  Similarity=0.643  Sum_probs=30.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEee
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEA   38 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa   38 (496)
                      ..+|+|||+|-.|-.+|..|+..|+.+++|++.
T Consensus       118 ~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~  150 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATSGIGEIILIDN  150 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEECC
Confidence            578999999999999999999999878999986

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=89.86  E-value=0.23  Score=47.94  Aligned_cols=33  Identities=15%  Similarity=0.293  Sum_probs=30.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCC-------CCcEEEEeeCC
Q 010995            7 SPVIIIGAGVSGISAGKILAENG-------IEDILILEASD   40 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G-------~~~V~vlEa~~   40 (496)
                      .+|.|||+|..|.+.|..|+++|       + +|++++++.
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~-~V~~~~r~~   61 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFEN-EVRMWIRDE   61 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCS-CEEEECCSC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCC-eEEEEECCh
Confidence            47999999999999999999999       8 699998764

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=89.83  E-value=0.25  Score=46.37  Aligned_cols=34  Identities=15%  Similarity=0.131  Sum_probs=30.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCC-CCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENG-IEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G-~~~V~vlEa~~   40 (496)
                      +.+|.|||.|..|...|..|+++| + +|++++++.
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~-~V~~~dr~~   58 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAA-RLAAYDLRF   58 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCS-EEEEECGGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCC-eEEEEeCCC
Confidence            457999999999999999999999 9 799999763

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=89.70  E-value=0.31  Score=45.85  Aligned_cols=36  Identities=17%  Similarity=0.503  Sum_probs=30.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ++.+|+|||||-.|.+.|+.|+..|+.+|+++|..+
T Consensus         6 ~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~   41 (324)
T 3gvi_A            6 ARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE   41 (324)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            456899999999999999999999872399998754

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=89.68  E-value=0.22  Score=46.31  Aligned_cols=34  Identities=21%  Similarity=0.469  Sum_probs=28.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|.+||-|..|..-|..|.++|+ +|++++++.
T Consensus         5 s~kIgfIGLG~MG~~mA~~L~~~G~-~V~v~dr~~   38 (297)
T 4gbj_A            5 SEKIAFLGLGNLGTPIAEILLEAGY-ELVVWNRTA   38 (297)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTC-EEEEC----
T ss_pred             CCcEEEEecHHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            3579999999999999999999999 799998754

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=89.65  E-value=0.31  Score=48.18  Aligned_cols=34  Identities=18%  Similarity=0.366  Sum_probs=31.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ..+.|+|+|+|..|.++|..|+..|. +|++.|.+
T Consensus       264 ~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~  297 (488)
T 3ond_A          264 AGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEID  297 (488)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            46789999999999999999999999 79999864

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=89.65  E-value=0.21  Score=47.41  Aligned_cols=33  Identities=21%  Similarity=0.242  Sum_probs=29.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|+|||+|.+|+-+|..|++.|  +|++++++.
T Consensus       163 ~~~v~VvG~G~~g~e~a~~l~~~~--~v~~v~~~~  195 (357)
T 4a9w_A          163 GMRVAIIGGGNSGAQILAEVSTVA--ETTWITQHE  195 (357)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTS--EEEEECSSC
T ss_pred             CCEEEEECCCcCHHHHHHHHHhhC--CEEEEECCC
Confidence            478999999999999999999998  499998763

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=89.64  E-value=0.23  Score=45.61  Aligned_cols=33  Identities=15%  Similarity=0.399  Sum_probs=30.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      .++|+|||+|-.|-+.|+.|.+.|. +|++++++
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~g~-~V~v~~r~  161 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKEGA-KVFLWNRT  161 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCC-EEEEEECC
Confidence            4679999999999999999999999 79999875

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=89.63  E-value=0.37  Score=44.83  Aligned_cols=35  Identities=23%  Similarity=0.424  Sum_probs=31.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..++|.|||+|-.|..+|..|...|. +|++++++.
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~~  190 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSS  190 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSH
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            46789999999999999999999999 799999753

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=89.58  E-value=0.1  Score=46.31  Aligned_cols=34  Identities=26%  Similarity=0.304  Sum_probs=30.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      .+.+|.|||+|..|-+-|..|+++|+ +|+++.+.
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~G~-~V~~~~~~   38 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSVGH-YVTVLHAP   38 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHTTC-EEEECSSG
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHCCC-EEEEecCH
Confidence            44589999999999999999999999 79998873

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=89.55  E-value=0.27  Score=45.73  Aligned_cols=33  Identities=18%  Similarity=0.310  Sum_probs=30.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.+|.|||+|..|...|..|++.|+ +|++++++
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~   36 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGV-TVYAFDLM   36 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            4579999999999999999999999 79999864

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=89.50  E-value=0.3  Score=42.66  Aligned_cols=31  Identities=26%  Similarity=0.333  Sum_probs=28.4

Q ss_pred             CEEEEC-CCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            8 PVIIIG-AGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         8 dVvIIG-aGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +|+||| +|-.|...|..|+++|+ +|++++++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~-~V~~~~r~   33 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRR   33 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESS
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            589999 99999999999999999 79999864

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=89.48  E-value=0.21  Score=48.76  Aligned_cols=30  Identities=23%  Similarity=0.478  Sum_probs=28.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +|.|||+|..|+..|..|++ |+ +|++++++
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~-~V~~~d~~   31 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QN-EVTIVDIL   31 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TS-EEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHhC-CC-EEEEEECC
Confidence            59999999999999999999 99 79999875

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=89.42  E-value=0.37  Score=44.66  Aligned_cols=35  Identities=20%  Similarity=0.349  Sum_probs=31.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..++|.|||+|-.|..+|..|...|. +|++++++.
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~~  188 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAALGA-KVKVGARES  188 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence            46789999999999999999999999 799999753

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=89.35  E-value=0.16  Score=48.80  Aligned_cols=31  Identities=13%  Similarity=0.393  Sum_probs=29.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +|.|||+|..|.+.|..|+++|+ +|++++++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~-~V~~~~r~   47 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCR-EVCVWHMN   47 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEE-EEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            79999999999999999999999 79999864

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=89.26  E-value=0.18  Score=48.12  Aligned_cols=33  Identities=24%  Similarity=0.362  Sum_probs=29.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCC-------CCcEEEEeeCC
Q 010995            7 SPVIIIGAGVSGISAGKILAENG-------IEDILILEASD   40 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G-------~~~V~vlEa~~   40 (496)
                      .+|.|||+|..|.+.|..|+++|       + +|++++++.
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~-~V~~~~r~~   48 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDP-RVTMWVFEE   48 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEE-EEEEECCCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCC-eEEEEEcCh
Confidence            47999999999999999999999       8 799998754

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=89.20  E-value=0.49  Score=43.45  Aligned_cols=34  Identities=26%  Similarity=0.411  Sum_probs=30.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      +.+|+|.|+|..|...+..|.++|+ +|+++.++.
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~   36 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGH-EVTGLRRSA   36 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC-CEEEEECTT
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            4679999999999999999999999 699998764

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=89.20  E-value=0.3  Score=45.07  Aligned_cols=32  Identities=25%  Similarity=0.313  Sum_probs=28.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .+|.|||+|..|...|..|++ |+ +|++++++.
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~-~V~~~~~~~   33 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RF-PTLVWNRTF   33 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TS-CEEEECSST
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CC-eEEEEeCCH
Confidence            369999999999999999999 99 699998643

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=89.18  E-value=0.28  Score=45.06  Aligned_cols=35  Identities=17%  Similarity=0.246  Sum_probs=30.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .+.+|+|+|||..|...+..|.++|+ +|+++.++.
T Consensus         4 m~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~   38 (286)
T 3ius_A            4 MTGTLLSFGHGYTARVLSRALAPQGW-RIIGTSRNP   38 (286)
T ss_dssp             -CCEEEEETCCHHHHHHHHHHGGGTC-EEEEEESCG
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHCCC-EEEEEEcCh
Confidence            35689999999999999999999999 799998754

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=89.11  E-value=0.34  Score=45.31  Aligned_cols=34  Identities=32%  Similarity=0.579  Sum_probs=29.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .+|+|||||-.|.+.|+.|+..|+-+|+++|...
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            5799999999999999999999951499999753

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=89.05  E-value=0.29  Score=45.41  Aligned_cols=32  Identities=25%  Similarity=0.411  Sum_probs=29.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      .+|.|||+|..|...|..|++.|+ +|++++++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~   37 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRN   37 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSC
T ss_pred             ceEEEECchHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            479999999999999999999999 79999864

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=88.89  E-value=0.4  Score=42.59  Aligned_cols=35  Identities=17%  Similarity=0.239  Sum_probs=30.7

Q ss_pred             CCCCEEEECC-CHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGA-GVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGa-GiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      +.+.|+|.|| |-.|...+..|.++|+ +|+++.++.
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~   55 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNE   55 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSG
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECCh
Confidence            4567999998 9999999999999999 799998753

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=88.85  E-value=0.42  Score=43.33  Aligned_cols=35  Identities=14%  Similarity=0.228  Sum_probs=30.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCC----CCcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENG----IEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G----~~~V~vlEa~~~   41 (496)
                      +.+|.|||+|..|.+-|..|+++|    + +|++++++..
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~-~v~~~~~~~~   42 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKE-NLFYYGPSKK   42 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGG-GEEEECSSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCC-eEEEEeCCcc
Confidence            347999999999999999999999    6 6999988653

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=88.85  E-value=0.31  Score=45.39  Aligned_cols=36  Identities=22%  Similarity=0.549  Sum_probs=29.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCC-cEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIE-DILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~-~V~vlEa~~   40 (496)
                      .+.+|+|||||..|-+.|+.|+.+|+- +|+|+|..+
T Consensus        13 ~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~   49 (303)
T 2i6t_A           13 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE   49 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            346899999999999999999999861 499999765

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=88.83  E-value=0.42  Score=46.61  Aligned_cols=50  Identities=20%  Similarity=0.224  Sum_probs=38.1

Q ss_pred             HHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecCh
Q 010995          193 HLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASI  252 (496)
Q Consensus       193 ~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~  252 (496)
                      .+.+.+.+.+.+      .|++++++++|++|+.+  +  |.+.+|+++++|.||++++.
T Consensus       219 ~~~~~~~~~l~~------~gV~~~~~~~v~~i~~~--~--v~~~~g~~~~~D~vi~a~G~  268 (409)
T 3h8l_A          219 NSRKAVASIYNQ------LGIKLVHNFKIKEIREH--E--IVDEKGNTIPADITILLPPY  268 (409)
T ss_dssp             HHHHHHHHHHHH------HTCEEECSCCEEEECSS--E--EEETTSCEEECSEEEEECCE
T ss_pred             HHHHHHHHHHHH------CCCEEEcCCceEEECCC--e--EEECCCCEEeeeEEEECCCC
Confidence            444555555544      69999999999999753  2  66778889999999999864

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=88.81  E-value=0.38  Score=50.61  Aligned_cols=34  Identities=26%  Similarity=0.398  Sum_probs=31.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      -.+|.|||||..|-.-|+.++.+|+ +|+++|.++
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a~aG~-~V~l~D~~~  349 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFARVGI-SVVAVESDP  349 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSH
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCC-chhcccchH
Confidence            3689999999999999999999999 799999754

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=88.75  E-value=0.17  Score=50.24  Aligned_cols=33  Identities=30%  Similarity=0.448  Sum_probs=30.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      -+|+|+|+|-.|.+.|..|.+.|+ +|+|+|..+
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~-~v~vId~d~   36 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENN-DITIVDKDG   36 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTE-EEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCH
Confidence            369999999999999999999999 799999864

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=88.72  E-value=0.26  Score=49.48  Aligned_cols=34  Identities=21%  Similarity=0.370  Sum_probs=30.4

Q ss_pred             CCCEEEECCCHHHHH-HHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGIS-AGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~-aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .++|.|||.|-+|++ +|..|.++|+ +|++.|.++
T Consensus        22 ~~~v~viGiG~sG~s~~A~~l~~~G~-~V~~~D~~~   56 (494)
T 4hv4_A           22 VRHIHFVGIGGAGMGGIAEVLANEGY-QISGSDLAP   56 (494)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             CCEEEEEEEcHhhHHHHHHHHHhCCC-eEEEEECCC
Confidence            468999999999997 6999999999 799999754

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=88.71  E-value=0.34  Score=46.07  Aligned_cols=34  Identities=24%  Similarity=0.380  Sum_probs=31.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEee
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEA   38 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa   38 (496)
                      +..+|+|||+|-.|..+|..|+..|+.+++|+|.
T Consensus        35 ~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~   68 (346)
T 1y8q_A           35 RASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDH   68 (346)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEEC
Confidence            3578999999999999999999999988999985

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=88.66  E-value=0.35  Score=44.03  Aligned_cols=33  Identities=24%  Similarity=0.522  Sum_probs=29.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCc-EEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIED-ILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~-V~vlEa~   39 (496)
                      +.+|.|||+|..|...|..|++.|+ + |++++++
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g~-~~v~~~~~~   43 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKGF-RIVQVYSRT   43 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHTC-CEEEEECSS
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCC-eEEEEEeCC
Confidence            4579999999999999999999999 7 8888763

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=88.62  E-value=0.29  Score=47.62  Aligned_cols=36  Identities=19%  Similarity=0.483  Sum_probs=31.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCC-cEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIE-DILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~-~V~vlEa~~~   41 (496)
                      .++|||||||.+|++||.+|++.|.. +|+|+|+++.
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~   38 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNET   38 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSS
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCC
Confidence            57899999999999999999987642 6999999875

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=88.54  E-value=0.36  Score=48.96  Aligned_cols=34  Identities=24%  Similarity=0.501  Sum_probs=31.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ..+|+|||+|-.|-.+|..|+..|+.+++|+|..
T Consensus       327 ~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D  360 (598)
T 3vh1_A          327 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG  360 (598)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            5789999999999999999999999889999853

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=88.52  E-value=0.39  Score=44.47  Aligned_cols=32  Identities=31%  Similarity=0.460  Sum_probs=29.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      +|.|||+|..|...|..|++.|+ +|++++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~-~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGY-PLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTC-CEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            59999999999999999999999 699998753

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=88.50  E-value=0.36  Score=45.37  Aligned_cols=35  Identities=9%  Similarity=0.361  Sum_probs=30.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC-CcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGI-EDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~-~~V~vlEa~   39 (496)
                      ...+|+|||+|..|.+.|+.|+..|+ .+|+++|..
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~   55 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVM   55 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence            45689999999999999999999986 259999864

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=88.49  E-value=0.56  Score=42.62  Aligned_cols=33  Identities=24%  Similarity=0.567  Sum_probs=30.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +. +|+|||+|-.|-+.|+.|.+.|. +|++++++
T Consensus       116 ~~-~v~iiG~G~~g~~~a~~l~~~g~-~v~v~~r~  148 (263)
T 2d5c_A          116 KG-PALVLGAGGAGRAVAFALREAGL-EVWVWNRT  148 (263)
T ss_dssp             CS-CEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CC-eEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            45 89999999999999999999999 79999876

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=88.49  E-value=0.44  Score=44.72  Aligned_cols=36  Identities=17%  Similarity=0.433  Sum_probs=30.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ++.+|+|||+|..|.+.|+.|+..|..+|+++|..+
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~   39 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ   39 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence            356899999999999999999999872499998754

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=88.44  E-value=0.39  Score=44.02  Aligned_cols=31  Identities=19%  Similarity=0.292  Sum_probs=28.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +|.|||+|..|.+.|..|.+.|+ +|++++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~   32 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQ   32 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            58999999999999999999999 79999764

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=88.43  E-value=0.41  Score=48.62  Aligned_cols=35  Identities=23%  Similarity=0.488  Sum_probs=31.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +..+|+|||+|-.|-.+|..|+..|+.+++|+|..
T Consensus       325 ~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D  359 (615)
T 4gsl_A          325 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG  359 (615)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            35789999999999999999999999889999863

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=88.41  E-value=0.47  Score=44.63  Aligned_cols=34  Identities=24%  Similarity=0.241  Sum_probs=29.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCC----CCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENG----IEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G----~~~V~vlEa~~   40 (496)
                      +.+|.|||+|..|.+-|..|.++|    + +|++++++.
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~-~V~v~~r~~   59 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAAGVLAAH-KIMASSPDM   59 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHTTSSCGG-GEEEECSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCcc-eEEEECCCc
Confidence            347999999999999999999999    7 699998643

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=88.39  E-value=0.52  Score=45.01  Aligned_cols=35  Identities=17%  Similarity=0.249  Sum_probs=31.3

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ...+.|+|+|+|-.|..+|..|.+.|. +|++.+..
T Consensus       171 L~GktV~V~G~G~VG~~~A~~L~~~Ga-kVvv~D~~  205 (364)
T 1leh_A          171 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVN  205 (364)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCcCEEEEECchHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            456789999999999999999999999 69998853

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=88.30  E-value=0.46  Score=47.50  Aligned_cols=33  Identities=15%  Similarity=0.256  Sum_probs=30.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .+|.|||+|..|...|..|+++|+ +|++++++.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~-~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            479999999999999999999999 699998753

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=88.27  E-value=0.53  Score=44.62  Aligned_cols=33  Identities=30%  Similarity=0.403  Sum_probs=29.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ..+|.|||+|..|.+.|..|++.|+ +|++++++
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~~   48 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRS   48 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTC-CEEEECCT
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcC-EEEEEECC
Confidence            4579999999999999999999999 69998864

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=88.23  E-value=0.36  Score=43.78  Aligned_cols=31  Identities=23%  Similarity=0.330  Sum_probs=28.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC-CCcEEEEeeC
Q 010995            8 PVIIIGAGVSGISAGKILAENG-IEDILILEAS   39 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G-~~~V~vlEa~   39 (496)
                      +|.|||+|..|.+.|..|++.| + +|++++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~-~v~~~~r~   33 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGY-RIYIANRG   33 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSC-EEEEECSS
T ss_pred             EEEEECchHHHHHHHHHHHHCCCC-eEEEECCC
Confidence            5999999999999999999999 8 79999864

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=88.23  E-value=0.5  Score=46.29  Aligned_cols=34  Identities=32%  Similarity=0.464  Sum_probs=31.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEee
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEA   38 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa   38 (496)
                      +..+|+|||+|-.|-.+|..|+..|+.+++|+|.
T Consensus        39 ~~~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~   72 (434)
T 1tt5_B           39 DTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDM   72 (434)
T ss_dssp             HTCCEEEECSSTHHHHHHHHHHHTTCCCEEEEEC
T ss_pred             cCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            3578999999999999999999999988999986

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=88.05  E-value=0.49  Score=44.08  Aligned_cols=37  Identities=22%  Similarity=0.406  Sum_probs=31.5

Q ss_pred             CCCCCEEEECC-CHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            4 TSRSPVIIIGA-GVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         4 ~~~~dVvIIGa-GiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      .++.+|+|.|| |..|...+..|.++|+ +|+++.++..
T Consensus         5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~   42 (321)
T 3vps_A            5 TLKHRILITGGAGFIGGHLARALVASGE-EVTVLDDLRV   42 (321)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC-CEEEECCCSS
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHHCCC-EEEEEecCCc
Confidence            34678999998 9999999999999999 6999987643

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=88.03  E-value=0.43  Score=43.29  Aligned_cols=33  Identities=15%  Similarity=0.268  Sum_probs=29.5

Q ss_pred             CCCCEEEECCC-HHHHHHHHHHHHCCCCcEEEEee
Q 010995            5 SRSPVIIIGAG-VSGISAGKILAENGIEDILILEA   38 (496)
Q Consensus         5 ~~~dVvIIGaG-iaGL~aA~~L~~~G~~~V~vlEa   38 (496)
                      ..++|+|||+| +.|..+|..|.+.|. .|+++.+
T Consensus       149 ~Gk~vvVvG~s~iVG~plA~lL~~~gA-tVtv~~~  182 (276)
T 3ngx_A          149 HENTVTIVNRSPVVGRPLSMMLLNRNY-TVSVCHS  182 (276)
T ss_dssp             CSCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECT
T ss_pred             CCCEEEEEcCChHHHHHHHHHHHHCCC-eEEEEeC
Confidence            46789999976 799999999999999 6999975

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=87.93  E-value=0.48  Score=43.56  Aligned_cols=34  Identities=12%  Similarity=0.263  Sum_probs=30.2

Q ss_pred             CCCCCEEEECCC-HHHHHHHHHHHHCCCCcEEEEee
Q 010995            4 TSRSPVIIIGAG-VSGISAGKILAENGIEDILILEA   38 (496)
Q Consensus         4 ~~~~dVvIIGaG-iaGL~aA~~L~~~G~~~V~vlEa   38 (496)
                      ...++|+|||+| +.|..+|..|.+.|. .|+++.+
T Consensus       163 l~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs  197 (301)
T 1a4i_A          163 IAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHS  197 (301)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECT
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEEC
Confidence            357899999999 789999999999999 6999963

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=87.90  E-value=0.53  Score=46.96  Aligned_cols=33  Identities=15%  Similarity=0.280  Sum_probs=30.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.+|.|||+|..|..-|..|+++|+ +|++++++
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~-~V~v~dr~   37 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGY-TVAIYNRT   37 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCC-EEEEEcCC
Confidence            4579999999999999999999999 69999875

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=87.88  E-value=0.5  Score=45.84  Aligned_cols=35  Identities=20%  Similarity=0.268  Sum_probs=31.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+.|+|||.|..|..+|..|...|. +|++.|.++
T Consensus       219 ~GktV~ViG~G~IGk~vA~~Lra~Ga-~Viv~D~dp  253 (435)
T 3gvp_A          219 GGKQVVVCGYGEVGKGCCAALKAMGS-IVYVTEIDP  253 (435)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEeCCh
Confidence            46789999999999999999999999 799999743

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=87.87  E-value=0.38  Score=47.14  Aligned_cols=34  Identities=24%  Similarity=0.565  Sum_probs=30.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+..|||.|..|+..|..|+++|+ +|++++.+.
T Consensus        11 ~~~~~ViGlGyvGlp~A~~La~~G~-~V~~~D~~~   44 (431)
T 3ojo_A           11 GSKLTVVGLGYIGLPTSIMFAKHGV-DVLGVDINQ   44 (431)
T ss_dssp             -CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CCccEEEeeCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            3578999999999999999999999 799999853

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=87.71  E-value=0.61  Score=40.12  Aligned_cols=33  Identities=21%  Similarity=0.440  Sum_probs=29.9

Q ss_pred             CCEEEECC-CHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            7 SPVIIIGA-GVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         7 ~dVvIIGa-GiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..|+|+|| |-.|...+..|.++|+ +|+++.++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~-~V~~~~r~~   37 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDS   37 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC-eEEEEEeCh
Confidence            57999998 9999999999999999 799998753

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=87.65  E-value=0.54  Score=42.99  Aligned_cols=39  Identities=10%  Similarity=0.109  Sum_probs=32.0

Q ss_pred             CCCCCCCCEEEECC---CHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            1 MDSTSRSPVIIIGA---GVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         1 m~~~~~~dVvIIGa---GiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      |.....+.|+|.||   |-.|...|..|+++|. +|+++.++.
T Consensus         1 M~~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~-~V~~~~r~~   42 (275)
T 2pd4_A            1 MGFLKGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNE   42 (275)
T ss_dssp             -CTTTTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESST
T ss_pred             CCCCCCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            55445677999997   5889999999999999 799998764

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=87.63  E-value=0.47  Score=43.56  Aligned_cols=33  Identities=30%  Similarity=0.454  Sum_probs=28.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCC-cEEEEeeC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIE-DILILEAS   39 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~-~V~vlEa~   39 (496)
                      .+|.|||+|..|.+.|..|++.|+. +|++++++
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~   35 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            4699999999999999999999972 38888754

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=87.60  E-value=0.41  Score=43.37  Aligned_cols=33  Identities=24%  Similarity=0.225  Sum_probs=29.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.+|.|||+|..|...|..|.+.|+ +|.+++++
T Consensus         3 ~m~i~iiG~G~mG~~~a~~l~~~g~-~v~~~~~~   35 (259)
T 2ahr_A            3 AMKIGIIGVGKMASAIIKGLKQTPH-ELIISGSS   35 (259)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTSSC-EEEEECSS
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCC-eEEEECCC
Confidence            4579999999999999999999998 79999864

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=87.57  E-value=0.72  Score=40.39  Aligned_cols=33  Identities=18%  Similarity=0.215  Sum_probs=29.0

Q ss_pred             CCCEEEECC-CHHHHHHHHHHH-HCCCCcEEEEeeC
Q 010995            6 RSPVIIIGA-GVSGISAGKILA-ENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGa-GiaGL~aA~~L~-~~G~~~V~vlEa~   39 (496)
                      ++.|+|+|| |-.|...|..|+ +.|+ +|+++.++
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~   39 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQ   39 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESS
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecC
Confidence            445999995 999999999999 8999 79999875

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=87.49  E-value=0.52  Score=45.91  Aligned_cols=36  Identities=25%  Similarity=0.531  Sum_probs=31.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ...+|+|||+|-.|..+|..|...|.++|++++++.
T Consensus       166 ~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~  201 (404)
T 1gpj_A          166 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY  201 (404)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             cCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            467899999999999999999999984599998763

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=87.47  E-value=0.53  Score=46.98  Aligned_cols=31  Identities=26%  Similarity=0.496  Sum_probs=29.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +|.|||+|..|...|..|+++|+ +|++++++
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~-~V~v~dr~   33 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGF-KVAVFNRT   33 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             EEEEEChHHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            69999999999999999999999 69999875

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=87.43  E-value=0.33  Score=47.33  Aligned_cols=30  Identities=20%  Similarity=0.437  Sum_probs=27.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHH-CCCCcEEEEe
Q 010995            7 SPVIIIGAGVSGISAGKILAE-NGIEDILILE   37 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~-~G~~~V~vlE   37 (496)
                      .+|+|||+|..|.+.|..|++ +|+ +|++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~-~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGV-EVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTE-EEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCC-EEEEEe
Confidence            369999999999999999998 599 799998

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=87.25  E-value=0.32  Score=45.04  Aligned_cols=32  Identities=22%  Similarity=0.281  Sum_probs=29.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .+|.|||+|..|...|..|++.|+ +|++++ +.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~-~~   35 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGH-QLHVTT-IG   35 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTC-EEEECC-SS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCC-EEEEEc-CH
Confidence            479999999999999999999999 799998 53

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=87.21  E-value=0.59  Score=45.40  Aligned_cols=35  Identities=20%  Similarity=0.506  Sum_probs=30.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC--CcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGI--EDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~--~~V~vlEa~   39 (496)
                      +..+|+|.|||-||+.+|..|.+.|.  ++|.++++.
T Consensus       218 ~d~riV~~GAGaAGigia~ll~~~G~~~~~i~l~D~~  254 (487)
T 3nv9_A          218 HECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSK  254 (487)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEETT
T ss_pred             hhcEEEEECCCHHHHHHHHHHHHcCCCcccEEEEecc
Confidence            34689999999999999999999998  468888864

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=87.14  E-value=0.59  Score=44.24  Aligned_cols=35  Identities=17%  Similarity=0.348  Sum_probs=30.1

Q ss_pred             CCCCEEEECC-CHHHHHHHHHHHHCCC-CcEEEEeeC
Q 010995            5 SRSPVIIIGA-GVSGISAGKILAENGI-EDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGa-GiaGL~aA~~L~~~G~-~~V~vlEa~   39 (496)
                      .+.+|+|||+ |-.|.++|+.|...|. .+|+++|..
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~   43 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF   43 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            4568999997 9999999999999985 269999864

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=87.11  E-value=0.42  Score=44.87  Aligned_cols=32  Identities=22%  Similarity=0.455  Sum_probs=28.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC-CcEEEEeeC
Q 010995            8 PVIIIGAGVSGISAGKILAENGI-EDILILEAS   39 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~-~~V~vlEa~   39 (496)
                      +|+|||+|-.|.+.|..|+++|+ .+|++++.+
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~   34 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            59999999999999999999987 139999875

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=87.07  E-value=0.56  Score=43.11  Aligned_cols=34  Identities=12%  Similarity=0.390  Sum_probs=29.9

Q ss_pred             CCCCCEEEECC-CHHHHHHHHHHHHCCCCcEEEEee
Q 010995            4 TSRSPVIIIGA-GVSGISAGKILAENGIEDILILEA   38 (496)
Q Consensus         4 ~~~~dVvIIGa-GiaGL~aA~~L~~~G~~~V~vlEa   38 (496)
                      ...++|+|||+ |+.|..+|..|.+.|. .|+++.+
T Consensus       163 l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~~~  197 (300)
T 4a26_A          163 MAGKRAVVLGRSNIVGAPVAALLMKENA-TVTIVHS  197 (300)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECT
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence            35689999995 5799999999999999 6999976

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=87.06  E-value=0.6  Score=46.52  Aligned_cols=34  Identities=21%  Similarity=0.348  Sum_probs=31.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ....|+|||+|..|..+|..|+..|. +|+++|.+
T Consensus       273 ~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~  306 (494)
T 3ce6_A          273 GGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEID  306 (494)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            46789999999999999999999999 79999874

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=87.05  E-value=0.6  Score=43.34  Aligned_cols=34  Identities=21%  Similarity=0.351  Sum_probs=26.6

Q ss_pred             CCCEEEECCC-HHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAG-VSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaG-iaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+++||||| .+++.+|..|.+.|. +|+++++.+
T Consensus       146 ~~~~~VIggG~~~~~e~a~~~~~~~~-~v~i~~~~~  180 (304)
T 4fk1_A          146 DQPLIIISENEDHTLHMTKLVYNWST-DLVIATNGN  180 (304)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHTTTCS-CEEEECSSC
T ss_pred             CCceeeecCCCchhhhHHHHHHhCCc-eEEEEeccc
Confidence            4567777777 567899999998898 699987643

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=87.01  E-value=0.69  Score=41.55  Aligned_cols=33  Identities=18%  Similarity=0.294  Sum_probs=28.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCC---CcEEEEeeC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGI---EDILILEAS   39 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~---~~V~vlEa~   39 (496)
                      .+|.|||+|..|.+.|..|.++|+   .+|++++++
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~   38 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLN   38 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSC
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCC
Confidence            579999999999999999999997   148888764

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=86.72  E-value=0.62  Score=43.44  Aligned_cols=33  Identities=27%  Similarity=0.600  Sum_probs=28.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      +|+|||||-.|.+.|+.|+..|+.+|.++|...
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~   33 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTP   33 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSST
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCCh
Confidence            589999999999999999998882399999753

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=86.71  E-value=0.47  Score=41.73  Aligned_cols=34  Identities=18%  Similarity=0.316  Sum_probs=30.5

Q ss_pred             CCCEEEECC-CHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGA-GVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGa-GiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      +.+|+|+|| |..|...+..|.++|+ +|+++.++.
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~   38 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGF-EVTAVVRHP   38 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTC-EEEEECSCG
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEEcCc
Confidence            578999995 9999999999999999 799998763

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=86.63  E-value=0.64  Score=42.42  Aligned_cols=34  Identities=21%  Similarity=0.223  Sum_probs=30.1

Q ss_pred             CCCCCEEEECCC-HHHHHHHHHHHHCCCCcEEEEee
Q 010995            4 TSRSPVIIIGAG-VSGISAGKILAENGIEDILILEA   38 (496)
Q Consensus         4 ~~~~dVvIIGaG-iaGL~aA~~L~~~G~~~V~vlEa   38 (496)
                      ...++|+|||+| +.|-.+|..|.+.|. .|+++.+
T Consensus       157 l~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs  191 (288)
T 1b0a_A          157 TFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHR  191 (288)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHCCC-eEEEEeC
Confidence            357899999999 679999999999999 6999964

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=86.61  E-value=0.53  Score=44.21  Aligned_cols=36  Identities=28%  Similarity=0.453  Sum_probs=30.8

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCC-CcEEEEeeC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGI-EDILILEAS   39 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~-~~V~vlEa~   39 (496)
                      ....+|+|||+|-.|.+.|+.|+..|. .+++++|..
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~   43 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            455789999999999999999999886 259999863

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=86.48  E-value=0.42  Score=44.11  Aligned_cols=33  Identities=24%  Similarity=0.387  Sum_probs=29.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.+.|+|+|+|-.|.+.|+.|++.| + |+|+.++
T Consensus       127 ~~k~vlV~GaGgiG~aia~~L~~~G-~-V~v~~r~  159 (287)
T 1nvt_A          127 KDKNIVIYGAGGAARAVAFELAKDN-N-IIIANRT  159 (287)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS-E-EEEECSS
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCC-C-EEEEECC
Confidence            4567999999999999999999999 5 9999764

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=86.31  E-value=0.81  Score=42.03  Aligned_cols=34  Identities=26%  Similarity=0.291  Sum_probs=29.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCC--cEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIE--DILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~--~V~vlEa~   39 (496)
                      +.+|.|||+|..|-+-|..|.++|+.  +|++++++
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~   38 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRS   38 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSS
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCC
Confidence            46799999999999999999999972  48888864

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=86.31  E-value=0.69  Score=44.98  Aligned_cols=34  Identities=18%  Similarity=0.286  Sum_probs=31.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ..+.|+|||.|..|..+|..|...|. +|+++|.+
T Consensus       210 ~GktVgIiG~G~IG~~vA~~Lka~Ga-~Viv~D~~  243 (436)
T 3h9u_A          210 AGKTACVCGYGDVGKGCAAALRGFGA-RVVVTEVD  243 (436)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            46789999999999999999999999 79999874

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=86.26  E-value=0.86  Score=43.06  Aligned_cols=35  Identities=23%  Similarity=0.227  Sum_probs=31.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ...+|.|||.|-.|...|..|+..|. +|++++++.
T Consensus       149 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~  183 (334)
T 2dbq_A          149 YGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTR  183 (334)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECCCc
Confidence            45679999999999999999999999 799998754

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=86.16  E-value=0.78  Score=42.28  Aligned_cols=34  Identities=15%  Similarity=0.446  Sum_probs=30.3

Q ss_pred             CCCCEEEEC-CCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIG-AGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIG-aGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.+.|+|+| +|-.|.+.|+.|++.|. +|+++.++
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~-~V~i~~R~  152 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRK  152 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECC
Confidence            456799999 99999999999999999 69999764

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=86.14  E-value=1.4  Score=44.13  Aligned_cols=43  Identities=9%  Similarity=0.047  Sum_probs=36.0

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .|++|+++++|++|..+++...|.+.+|+++.+|.||+|++..
T Consensus       270 ~GV~v~~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G~~  312 (493)
T 1y56_A          270 WGIDYVHIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADGRR  312 (493)
T ss_dssp             HTCEEEECSSEEEEECSSSCCEEEETTCCEEECSEEEECCCEE
T ss_pred             CCcEEEeCCeeEEEecCCceEEEEeCCCeEEEeCEEEECCCcC
Confidence            6999999999999987654445778888899999999998753

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=86.12  E-value=0.73  Score=41.93  Aligned_cols=37  Identities=8%  Similarity=0.232  Sum_probs=30.5

Q ss_pred             CCCCCCEEEECC---CHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            3 STSRSPVIIIGA---GVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         3 ~~~~~dVvIIGa---GiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+.+.|+|.||   |-.|...|..|+++|. +|+++.++.
T Consensus         4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~-~V~~~~r~~   43 (269)
T 2h7i_A            4 LLDGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDR   43 (269)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEECSC
T ss_pred             ccCCCEEEEECCCCCCchHHHHHHHHHHCCC-EEEEEecCh
Confidence            345567899995   7889999999999999 799987653

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=86.10  E-value=0.6  Score=43.37  Aligned_cols=33  Identities=18%  Similarity=0.288  Sum_probs=30.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +++|.+||=|..|..-|..|.++|+ +|+|++++
T Consensus         3 M~kIgfIGlG~MG~~mA~~L~~~G~-~v~v~dr~   35 (300)
T 3obb_A            3 MKQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLV   35 (300)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSS
T ss_pred             cCEEEEeeehHHHHHHHHHHHhCCC-eEEEEcCC
Confidence            5689999999999999999999999 79999875

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=86.10  E-value=0.63  Score=42.23  Aligned_cols=34  Identities=21%  Similarity=0.310  Sum_probs=29.3

Q ss_pred             CCCCEEEECC-C-HHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGA-G-VSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGa-G-iaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.+.|+|.|| | -.|...|..|+++|. +|+++.++
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~   56 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYH   56 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCC
Confidence            4567999998 7 499999999999999 79999764

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=85.88  E-value=0.68  Score=43.56  Aligned_cols=35  Identities=9%  Similarity=0.444  Sum_probs=30.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC-CcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGI-EDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~-~~V~vlEa~   39 (496)
                      ...+|+|||+|-.|.+.|+.|+.+|. .+|+|+|..
T Consensus        18 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~   53 (331)
T 4aj2_A           18 PQNKITVVGVGAVGMACAISILMKDLADELALVDVI   53 (331)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence            45689999999999999999999986 259999864

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=85.74  E-value=0.85  Score=43.12  Aligned_cols=36  Identities=14%  Similarity=0.235  Sum_probs=30.2

Q ss_pred             CCCCEEEECC-CHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            5 SRSPVIIIGA-GVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         5 ~~~dVvIIGa-GiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      +++.|+|.|| |..|...+..|.++|+ +|+++.++..
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~   54 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRTQGR-TVRGFDLRPS   54 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTC-CEEEEESSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCC-EEEEEeCCCC
Confidence            4578999998 9999999999999999 6999987653

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=85.61  E-value=0.55  Score=42.61  Aligned_cols=30  Identities=20%  Similarity=0.266  Sum_probs=27.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEee
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEA   38 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa   38 (496)
                      +|.|||+|..|...|..|++.|+ +|+++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~-~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC-EEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCC-eEEEeCC
Confidence            58999999999999999999999 7998754

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=85.61  E-value=0.79  Score=42.00  Aligned_cols=39  Identities=13%  Similarity=0.216  Sum_probs=30.3

Q ss_pred             CCCCCCCCEEEECC-CH--HHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            1 MDSTSRSPVIIIGA-GV--SGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         1 m~~~~~~dVvIIGa-Gi--aGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      |...+.+.|+|.|| |-  .|...|..|+++|. +|+++.++.
T Consensus        21 M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~   62 (280)
T 3nrc_A           21 MGFLAGKKILITGLLSNKSIAYGIAKAMHREGA-ELAFTYVGQ   62 (280)
T ss_dssp             -CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTC-EEEEEECTT
T ss_pred             ccccCCCEEEEECCCCCCCHHHHHHHHHHHcCC-EEEEeeCch
Confidence            44444567888885 44  79999999999999 799998765

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=85.33  E-value=0.58  Score=43.30  Aligned_cols=33  Identities=18%  Similarity=0.218  Sum_probs=28.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCC-cEEEEeeCC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIE-DILILEASD   40 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~-~V~vlEa~~   40 (496)
                      +|+|||||..|.+.|+.|++.|.- +|++++..+
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            599999999999999999999862 499998743

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=85.32  E-value=1.1  Score=42.28  Aligned_cols=36  Identities=25%  Similarity=0.257  Sum_probs=32.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..++|.|||.|-.|...|..|+..|. +|++++++..
T Consensus       163 ~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~dr~~~  198 (333)
T 3ba1_A          163 SGKRVGIIGLGRIGLAVAERAEAFDC-PISYFSRSKK  198 (333)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTC-CEEEECSSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCch
Confidence            45689999999999999999999999 6999998653

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=85.12  E-value=0.94  Score=46.28  Aligned_cols=34  Identities=21%  Similarity=0.477  Sum_probs=31.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      .+|+|||+|-.|...|..|.+.|+ +|+++|.++.
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~-~v~vid~d~~  382 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPV-PFILIDRQES  382 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-CEEEEECChH
Confidence            789999999999999999999999 7999999764

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=85.11  E-value=0.75  Score=42.36  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=28.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAEN--GIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~   39 (496)
                      +.+|.|||+|..|.+.|..|+++  |+ +|++++++
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~-~V~~~d~~   40 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHY-KIVGYNRS   40 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTS-EEEEECSS
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCc-EEEEEcCC
Confidence            45799999999999999999998  57 68888763

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=85.06  E-value=1.1  Score=43.34  Aligned_cols=35  Identities=26%  Similarity=0.355  Sum_probs=31.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+.|.|||+|..|...|..+.+.|+ +|.+++...
T Consensus        13 ~~k~IlIlG~G~~g~~la~aa~~~G~-~vi~~d~~~   47 (389)
T 3q2o_A           13 PGKTIGIIGGGQLGRMMALAAKEMGY-KIAVLDPTK   47 (389)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESST
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCC
Confidence            45689999999999999999999999 799998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	496
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	6e-43
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	2e-33
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	9e-11
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	3e-31
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	4e-04
d1b5qa2	112	d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea	3e-27
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	7e-22
d2dw4a3	109	d.16.1.5 (A:655-763) Lysine-specific histone demet	2e-17
d2iida2	113	d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan	4e-17
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	5e-17
d2v5za2	112	d.16.1.5 (A:290-401) Monoamine oxidase B {Human (H	4e-16
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	1e-13
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	9e-13
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	1e-09
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	3e-09
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	5e-09
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	6e-09
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	8e-07
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	1e-06
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	2e-06
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	3e-06
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	6e-06
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	4e-05
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	4e-05
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	5e-05
d1cjca2	230	c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase	6e-05
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	8e-05
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	8e-05
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	1e-04
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	2e-04
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	2e-04
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	2e-04
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	3e-04
d1lqta2	239	c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct	3e-04
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	3e-04
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	4e-04
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	5e-04
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	6e-04
d2cula1	230	c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {T	7e-04
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	9e-04
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	0.001
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	0.001
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	0.001
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	0.001
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	0.002

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  156 bits (393), Expect = 6e-43
 Identities = 72/448 (16%), Positives = 144/448 (32%), Gaps = 21/448 (4%)

Query: 9   VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGG 68
           VIIIG+GVSG++A + L   G+ D+ +LEA DR+GGRV   + G    +LGA  + G+GG
Sbjct: 8   VIIIGSGVSGLAAARQLQSFGM-DVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG 66

Query: 69  KESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVE-----SAIA 123
              NP+  ++ +  +           Y    ++       +    + + +E     S   
Sbjct: 67  ---NPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQL 123

Query: 124 NLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAEVEPISTYVDFGEREF 183
           +   L     ++G+ ++   +L        ++     +   +    E ++  V+  E+  
Sbjct: 124 DFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIK 183

Query: 184 LVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEA 243
            +  +   A  +    +            +   L K   EL  ++  +  K ++      
Sbjct: 184 ELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPP 243

Query: 244 NYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFF 303
           + V LS+    +     +            +                             
Sbjct: 244 SDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPV 303

Query: 304 IYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGP 363
             A                      ++   T   S+    + D       + VL+     
Sbjct: 304 ALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPA 363

Query: 364 DIPNATDILVPRWWNNRFQRGSYSNY---------PIISDNQLVNSIRAPVAGIFFTGEH 414
                    +P W  +  QR   +             I+    +     P+  +FF GEH
Sbjct: 364 VQF---VPPLPEWKTSAVQRMVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEH 420

Query: 415 TSERFNGYVHGGYLAGIDTGKAVVEKIR 442
           T   +   VHG  L+G+     + ++  
Sbjct: 421 TIRNYPATVHGALLSGLREAGRIADQFL 448

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score =  127 bits (318), Expect = 2e-33
 Identities = 107/305 (35%), Positives = 150/305 (49%), Gaps = 20/305 (6%)

Query: 9   VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGG 68
           VI++GAG+SGISA K L+E GI D+LILEA+D IGGR+    F G++VELGA W+ GV G
Sbjct: 3   VIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNG 62

Query: 69  KESNPVWE-LASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVA------ADSYKKAVESA 121
            + NP+W  + S   LR   SD+     N+Y   G +            ADS ++  E  
Sbjct: 63  GKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKL 122

Query: 122 IANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAE-VEPISTYVDFGE 180
            A L      + +I  + +     P+ P TP+++ +D+   D+E AE     S       
Sbjct: 123 SATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVPL 182

Query: 181 REFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSR----------NG 230
             F    +  Y     +  E  +    G+ L    K  K+V                  G
Sbjct: 183 ATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGG 242

Query: 231 VTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFP 290
           VTVKTED  VY A+YV++SAS+GVLQSDLI FKP LP WK  AI +   +   +   ++ 
Sbjct: 243 VTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGVNR--YEYD 300

Query: 291 CKFWP 295
               P
Sbjct: 301 QLRAP 305

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 61.1 bits (146), Expect = 9e-11
 Identities = 36/187 (19%), Positives = 65/187 (34%), Gaps = 13/187 (6%)

Query: 257 SDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFW 316
             + S +  +P             V  +   +    +      K                
Sbjct: 171 PRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLN 230

Query: 317 QHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRW 376
           + +         + V   +      +      +L      L   F P +P      + ++
Sbjct: 231 KVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQ-FKPKLPTWKVRAIYQF 289

Query: 377 WNNRFQRGSYSNYPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKA 436
           W            P+  +    + +RAPV  ++FTGEHTSE +NGYVHG YL+GID+ + 
Sbjct: 290 W------------PVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEI 337

Query: 437 VVEKIRK 443
           ++   +K
Sbjct: 338 LINCAQK 344

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (305), Expect = 3e-31
 Identities = 61/336 (18%), Positives = 121/336 (36%), Gaps = 35/336 (10%)

Query: 9   VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKF-GGVSVELGAGWIAGVG 67
           V+++G G+SG++A K+L ++G+ ++++LEA DR+GGR    +      V+LG  ++    
Sbjct: 2   VVVVGGGISGMAAAKLLHDSGL-NVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQ 60

Query: 68  GKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKN 127
               N +  LA + GL T   +      +                             + 
Sbjct: 61  ----NRILRLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRT 116

Query: 128 LEATNSNI-GEVIKAATELPSSPKTPLELAIDFILHD-------------------FEMA 167
           ++     I  +    A          ++  +D +                       E++
Sbjct: 117 MDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVS 176

Query: 168 EVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHS 227
            +  +      G    +++   G     +      +S     +L +R+KL + V  +  +
Sbjct: 177 ALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQT 236

Query: 228 RNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFL 287
           R  V V+T +  +YEA YVI +    +     I F PPLP  + + I +    V+    L
Sbjct: 237 RENVLVETLNHEMYEAKYVISAIPPTLGMK--IHFNPPLPMMRNQMITR----VFPPGIL 290

Query: 288 KFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAY 323
               +       + +F        +  +   ME A 
Sbjct: 291 TQYGRVLRQPVDRIYFAGTETATHWSGY---MEGAV 323

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 4e-04
 Identities = 42/295 (14%), Positives = 84/295 (28%), Gaps = 23/295 (7%)

Query: 153 LELAIDFILHDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILD 212
           L LA +  L  +++ EVE +  +V      F       +  + Y     F  T D    +
Sbjct: 64  LRLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGRE 123

Query: 213 NRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTE 272
                       +   N    +  D   +  +   L+     L     + +     +   
Sbjct: 124 IPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWY 183

Query: 273 AIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVT 332
             +                + +    G+                + +         ++V 
Sbjct: 184 VKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRENVLVE 243

Query: 333 LTNGESKR----VEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSN 388
             N E       + A P           ++  F P +P   +    +     F  G  + 
Sbjct: 244 TLNHEMYEAKYVISAIP-------PTLGMKIHFNPPLPMMRN----QMITRVFPPGILTQ 292

Query: 389 YPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRK 443
           Y           +R PV  I+F G  T+  ++GY+ G   AG    + ++  + K
Sbjct: 293 Y--------GRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILHAMGK 339

>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 112

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score =  103 bits (257), Expect = 3e-27
 Identities = 67/112 (59%), Positives = 87/112 (77%), Gaps = 1/112 (0%)

Query: 278 DVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGE 337
           D+ VYTKIFLKFP KFWP   G+EFF+YA  RRGYY  WQ  E  YP +N+L+VT+T+ E
Sbjct: 1   DMAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEE 60

Query: 338 SKRVEAQPDEETLKEAMEVLQDMFG-PDIPNATDILVPRWWNNRFQRGSYSN 388
           S+R+E Q DE+T  E M+VL+ MF   D+P+ATDILVPRWW++RF +G++SN
Sbjct: 61  SRRIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSN 112

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 94.8 bits (234), Expect = 7e-22
 Identities = 69/334 (20%), Positives = 132/334 (39%), Gaps = 37/334 (11%)

Query: 3   STSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFG--GVSVELGA 60
           +++   V+I+GAG++G+SA  +LA  G   + +LEAS+R GGRVR  +    G    LG 
Sbjct: 27  TSNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASERPGGRVRTYRNEEAGWYANLGP 85

Query: 61  GWIAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADS--YKKAV 118
             +          V E   K  LR       N     + ++ +     V  D    K  V
Sbjct: 86  MRLPEK----HRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPV 141

Query: 119 ESAIANLKNLEATNSNIGEVIKAATELPSSP----------------KTPLELAIDFILH 162
           + + A     +    ++G+V++       S                 +  L      ++ 
Sbjct: 142 KPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIG 201

Query: 163 DFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVR 222
           D    +     ++++  + + + A E+ +  ++  M +  L T+  + + +++  N  V 
Sbjct: 202 DLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDK--LPTAMYRDIQDKVHFNAQVI 259

Query: 223 ELQHSRNGVTVKTEDGC----VYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCD 278
           ++Q +   VTV  E          A+YVI+  +   ++  LI F PPL   K  A+    
Sbjct: 260 KIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVR--LIKFNPPLLPKKAHALRS-- 315

Query: 279 VMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGY 312
            +     F  F       S G+ +F   +  + +
Sbjct: 316 -VFTPYQFQHFS-DPLTASQGRIYFAGEYTAQAH 347

>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (185), Expect = 2e-17
 Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 4/108 (3%)

Query: 281 VYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKR 340
              K+ L F   FW   P    F +               N    + IL+  +    +  
Sbjct: 4   NLNKVVLCFDRVFWD--PSVNLFGHVGSTTASRGELFLFWN-LYKAPILLALVAGEAAGI 60

Query: 341 VEAQPDEETLKEAMEVLQDMFG-PDIPNATDILVPRWWNNRFQRGSYS 387
           +E   D+  +   + +L+ +FG   +P   + +V RW  + + RGSYS
Sbjct: 61  MENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYS 108

>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 74.8 bits (183), Expect = 4e-17
 Identities = 14/111 (12%), Positives = 32/111 (28%), Gaps = 6/111 (5%)

Query: 282 YTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRV 341
            TKIFL    KFW           +         +    N   G  +++      ++   
Sbjct: 5   GTKIFLTCTTKFWE--DDGIHGGKSTTDLPSRFIYYPNHNFTNGVGVIIAYGIGDDANFF 62

Query: 342 EAQPDEETLKEAMEVLQDMFGPDI----PNATDILVPRWWNNRFQRGSYSN 388
           +A   ++        L  +               ++ +W  +++  G  + 
Sbjct: 63  QALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGITT 113

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 80.2 bits (196), Expect = 5e-17
 Identities = 42/294 (14%), Positives = 80/294 (27%), Gaps = 40/294 (13%)

Query: 9   VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGG 68
           V ++G G+SG++    L   G  D ++LE+S R+GG V      G  VE G         
Sbjct: 3   VAVVGGGISGLAVAHHLRSRGT-DAVLLESSARLGGAVGTHALAGYLVEQGPNSFLD--- 58

Query: 69  KESNPVWELASKSGL-----------RTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKA 117
                   LA+   L           +  +        ++       + S +     +  
Sbjct: 59  -REPATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLR 117

Query: 118 VESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAEVEPISTYVD 177
           V   + + +  E  + ++    +      ++      +       D E   V      + 
Sbjct: 118 VAGELFSRRAPEGVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLV 177

Query: 178 FGEREFLVADERGYAHLLYKMAEEFLSTSDGKI---------------------LDNRLK 216
             ERE              +      + +  K+                     L +   
Sbjct: 178 KMEREHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVLIDALAASLGDAAH 237

Query: 217 LNKVVRELQHSRNGVTVKTEDG---CVYEANYVILSASIGVLQSDLISFKPPLP 267
           +   V  L     G  +  E+           V+L+A        L      L 
Sbjct: 238 VGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALA 291

>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 4e-16
 Identities = 17/112 (15%), Positives = 34/112 (30%), Gaps = 6/112 (5%)

Query: 281 VYTKIFLKFPCKFWP--CSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGES 338
              K  + +   FW      G    I   E    YT           +   +  +   ++
Sbjct: 4   SVIKCIVYYKEPFWRKKDYCG-TMIIDGEEAPVAYTLDDTKPEGNYAAI--MGFILAHKA 60

Query: 339 KRVEAQPDEETLKEAMEVLQDMF-GPDIPNATDILVPRWWNNRFQRGSYSNY 389
           +++     EE LK+  E+   +    +           W   ++  G Y+ Y
Sbjct: 61  RKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTY 112

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 70.2 bits (170), Expect = 1e-13
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 5/92 (5%)

Query: 9   VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGG 68
           V +IGAGVSG++A   L  +G+ ++ + EA  + GG++R+    G+  + GA  +    G
Sbjct: 4   VAVIGAGVSGLAAAYKLKIHGL-NVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEG 62

Query: 69  KESNPVWELASKSGLRTCFSDYTNARYNIYDR 100
                V  L    GLR       +       R
Sbjct: 63  ----DVTFLIDSLGLREKQQFPLSQNKRYIAR 90

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 66.7 bits (162), Expect = 9e-13
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 7/98 (7%)

Query: 9   VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGG 68
            II+G+G+ G      L +     +L++E  + IGG    E   G+ +      I     
Sbjct: 4   YIIVGSGLFGAVCANELKKLNK-KVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTND 62

Query: 69  KESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIP 106
           K          +      F+ +TN+   IY      +P
Sbjct: 63  KYIWDYVNDLVE------FNRFTNSPLAIYKDKLFNLP 94

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 57.1 bits (137), Expect = 1e-09
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV---RNEKFGGVSVELGAGWI 63
          ++I+GAG SG   G+ LAE G   + I++  D IGG     R+ +   +    G    
Sbjct: 5  ILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIF 61

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (133), Expect = 3e-09
 Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVG 67
          VI++G G++      +L+ +G   +L ++  D  GG   +     +  +     I+   
Sbjct: 8  VIVLGTGITECILSGLLSVDGK-KVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEE 65

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.6 bits (132), Expect = 5e-09
 Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAG 65
          VI++G G++      I++ NG   +L ++ +   GG   +        +        
Sbjct: 9  VIVLGTGLTECILSGIMSVNGK-KVLHMDRNPYYGGESSSITPLEELYKRFQLLEGP 64

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 54.8 bits (131), Expect = 6e-09
 Identities = 18/95 (18%), Positives = 39/95 (41%), Gaps = 4/95 (4%)

Query: 9   VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGG 68
           V+++GAG SG+ A   L E G   + ++E +  +GG     ++ G   ++ +        
Sbjct: 10  VLVVGAGFSGLYALYRLRELGR-SVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFS 68

Query: 69  KESNPVWELASKSGLRTCFSDYTNA---RYNIYDR 100
           +E    W    +   +     Y N    ++++   
Sbjct: 69  EEVLQEWNWTERYASQPEILRYINFVADKFDLRSG 103

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 48.5 bits (114), Expect = 8e-07
 Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 9  VIIIGAGVSGISAGKILAENGI-EDILILEASDRIGGRVRNEKFGG 53
          + IIGAG SG+   K L      + + + E     GG         
Sbjct: 7  IAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLS 52

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 47.6 bits (112), Expect = 1e-06
 Identities = 14/48 (29%), Positives = 27/48 (56%)

Query: 1  MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN 48
          M + + + V+++GAG +G+SA   +++N    + I+E S   GG    
Sbjct: 28 MITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWL 75

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 15/50 (30%), Positives = 24/50 (48%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVEL 58
          ++I GAG+ G+S    L + GI  + +LE+S  I            +VE 
Sbjct: 4  ILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEA 53

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 46.6 bits (109), Expect = 3e-06
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSV 56
          VI+IG G SG+ A    AE G  ++L+L+  +++G ++     G  +V
Sbjct: 5  VIVIGGGPSGLMAAIGAAEEGA-NVLLLDKGNKLGRKLAISGGGRCNV 51

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 45.3 bits (106), Expect = 6e-06
 Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 1/131 (0%)

Query: 9   VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGG 68
            IIIGAG +G+     LA+ G   + + +   +IG ++     G  +        A    
Sbjct: 7   NIIIGAGAAGLFCAAQLAKLGK-SVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLS 65

Query: 69  KESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKIIPSGVAADSYKKAVESAIANLKNL 128
           +  + V    ++       S         +++    +     A+   + ++S        
Sbjct: 66  QNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAK 125

Query: 129 EATNSNIGEVI 139
               S + +V 
Sbjct: 126 ILLRSEVSQVE 136

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 43.2 bits (100), Expect = 4e-05
 Identities = 10/45 (22%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 3  STSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47
          S +   + ++G  +SG++A  +L + G+ D+ + E S +      
Sbjct: 1  SPTTDRIAVVGGSISGLTAALMLRDAGV-DVDVYERSPQPLSGFG 44

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 42.4 bits (98), Expect = 4e-05
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN 48
          + ++GAG + IS    LA  G  DI I E  + +GG   +
Sbjct: 7  IALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTS 46

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 42.8 bits (99), Expect = 5e-05
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASD 40
          ++IIGAG+ G +    L   G  +I +L+   
Sbjct: 4  IVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.2 bits (98), Expect = 6e-05
 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 9  VIIIGAGVSGISAGKILAENGIE-DILILEASDRIGGRVR 47
          + ++G+G +G    + L ++     + I E      G VR
Sbjct: 4  ICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR 43

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 42.2 bits (98), Expect = 8e-05
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 6  RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47
          ++ V IIGAG SG+  G++L + GI D +ILE         R
Sbjct: 2  KTQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQTPDYVLGR 42

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 42.0 bits (97), Expect = 8e-05
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGV 54
          VI++GAG  G++AG  LA+ G+   L+++A D       +     +
Sbjct: 6  VIVVGAGSMGMAAGYQLAKQGV-KTLLVDAFDPPHTNGSHHGDTRI 50

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44
          V+++G+G +G SA     ++G   ++++E    IGG
Sbjct: 19 VVVVGSGGAGFSAAISATDSGA-KVILIEKEPVIGG 53

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR 47
          V+IIG+G +G++A     + G   +++LE     GG  +
Sbjct: 26 VVIIGSGGAGLAAAVSARDAGA-KVILLEKEPIPGGNTK 63

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 1   MDSTSRSPVIIIGAGVSGISAGKILAENGIE-DILILEASDRIGGRVRN--EKFGGVSVE 57
           +D  + S VII+GAG SG+SA  ++A+N  +  + I+E+S   GG      + F  + + 
Sbjct: 45  LDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMR 104

Query: 58  LGAGWIAGVGGKE 70
             A          
Sbjct: 105 KPAHLFLQELEIP 117

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 8/95 (8%)

Query: 1  MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGA 60
          +    R P ++IG+G  G  A   L + GI    I+E     G         G   ++  
Sbjct: 2  LADGDRVPALVIGSGYGGAVAALRLTQAGI-PTQIVEM----GRSWDTP---GSDGKIFC 53

Query: 61 GWIAGVGGKESNPVWELASKSGLRTCFSDYTNARY 95
          G +                 S       + +  RY
Sbjct: 54 GMLNPDKRSMWLADKTDQPVSNFMGFGINKSIDRY 88

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 40.7 bits (94), Expect = 3e-04
 Identities = 9/36 (25%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44
          V+++GAG +G +A     + G  ++++++ +   GG
Sbjct: 22 VLVVGAGSAGFNASLAAKKAGA-NVILVDKAPFSGG 56

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 6/45 (13%)

Query: 9  VIIIGAGVSGISAGKILAENGIE------DILILEASDRIGGRVR 47
          + I+G+G S   A   L +           + +LE      G VR
Sbjct: 5  IAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR 49

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 40.1 bits (92), Expect = 3e-04
 Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44
           ++IG G+ G +    LA+    +  + E+    G 
Sbjct: 7  AVVIGGGIIGSAIAYYLAKENK-NTALFESGTMGGR 41

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 5/44 (11%)

Query: 8  PVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKF 51
          P ++IG G     +   L E G+   L+LE     G        
Sbjct: 4  PAVVIGTGYGAAVSALRLGEAGV-QTLMLEM----GQLWNQPGP 42

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 39.0 bits (90), Expect = 5e-04
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN 48
          V+IIG G  G  A    A+ G      +E    +GG   N
Sbjct: 6  VVIIGGGPGGYVAAIKAAQLGF-KTTCIEKRGALGGTCLN 44

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 38.8 bits (89), Expect = 6e-04
 Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 2/97 (2%)

Query: 9   VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGG 68
           ++IIG G  G  A     + GI   +++E    +GG   N         +          
Sbjct: 8   LLIIGGGPGGYVAAIRAGQLGI-PTVLVE-GQALGGTCLNIGCIPSKALIHVAEQFHQAS 65

Query: 69  KESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKII 105
           + + P     S +  R         +  I DR    +
Sbjct: 66  RFTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGV 102

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} Length = 230

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

 Score = 38.9 bits (90), Expect = 7e-04
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGG 53
          V+I+GAG SG      LA+ G+   L+ ++ D +       K   
Sbjct: 5  VLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPF 49

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (89), Expect = 9e-04
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRN 48
          V+IIG G +G  A    A+ G  +   +E   ++GG   N
Sbjct: 8  VVIIGGGPAGYVAAIKAAQLGF-NTACVEKRGKLGGTCLN 46

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 38.7 bits (89), Expect = 0.001
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 12/67 (17%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGG 68
          V+IIG+G +G+S    LA+     +++L       G          S     G IA V  
Sbjct: 10 VLIIGSGAAGLSLALRLADQH--QVIVLSKGPVTEG----------STFYAQGGIAAVFD 57

Query: 69 KESNPVW 75
          +  +   
Sbjct: 58 ETDSIDS 64

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 5/82 (6%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGG 68
          V++IGAGV G+S    + E     +L                    + ++ AG       
Sbjct: 3  VVVIGAGVIGLSTALCIHERYH-SVLQPLDVKVYAD----RFTPFTTTDVAAGLWQPYTS 57

Query: 69 KESNPVWELASKSGLRTCFSDY 90
          + SNP     ++       S  
Sbjct: 58 EPSNPQEANWNQQTFNYLLSHI 79

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 5/44 (11%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFG 52
          V+I+G+G  G +  + L   G   + + +     G      K G
Sbjct: 7  VVIVGSGPIGCTYARELVGAGY-KVAMFDI----GEIDSGLKIG 45

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 11/65 (16%)

Query: 1  MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGA 60
          +   S+  V+++G+GV G+S+  ILA  G   + IL            +    VS +  A
Sbjct: 1  LMMHSQKRVVVLGSGVIGLSSALILARKGY-SVHILAR----------DLPEDVSSQTFA 49

Query: 61 GWIAG 65
             AG
Sbjct: 50 SPWAG 54

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 9  VIIIGAGVSGISAGKILAENGIEDILILEASDRIGG 44
          V+++G G  G SA    A+ G++ + I+E    +GG
Sbjct: 9  VVVLGGGPGGYSAAFAAADEGLK-VAIVERYKTLGG 43

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	496
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.97
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.97
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.97
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.94
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.92
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.91
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.85
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.79
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	99.68
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.61
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.54
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.54
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.53
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	99.52
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.52
d1b5qa2	112	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.51
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.44
d2v5za2	112	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.43
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.38
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.35
d2dw4a3	109	Lysine-specific histone demethylase 1, LSD1 {Human	99.35
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.32
d2iida2	113	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.27
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.26
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.23
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	99.11
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.98
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.96
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.94
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.91
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.91
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.82
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.81
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.8
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.8
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.8
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.79
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.77
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.77
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.76
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.75
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.73
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.73
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.72
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	98.71
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.7
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.69
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.69
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.69
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.69
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.66
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.64
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.64
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.63
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.62
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.59
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.59
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.56
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.49
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.48
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.47
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.44
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.42
d2ivda2	108	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.41
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.38
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.38
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.37
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.37
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.36
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.36
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.36
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.36
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.33
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.32
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.29
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.27
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.24
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.23
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.2
d1seza2	112	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.06
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.04
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.99
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.92
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.89
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.84
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	97.83
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.79
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.77
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	97.77
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.74
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.64
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	97.51
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.42
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.31
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.23
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	97.2
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.17
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.12
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.76
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.73
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	96.72
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	96.66
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.53
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.47
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.38
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.01
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	95.92
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	95.82
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.76
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.75
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.52
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	95.48
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	95.3
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.28
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.12
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	95.08
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	95.04
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.03
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	94.99
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.97
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	94.95
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	94.51
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	94.49
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	94.48
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	94.42
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	94.3
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	94.23
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	94.06
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	93.98
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	93.85
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	93.56
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	93.54
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	93.54
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	93.52
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	93.48
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	93.17
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	92.99
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	92.9
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	92.89
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	92.88
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	92.87
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	92.85
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	92.85
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	92.69
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	92.63
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	92.56
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	92.47
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	92.27
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	92.22
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.2
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.18
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	92.16
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	91.99
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	91.93
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	91.81
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	91.67
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	91.26
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	91.16
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	91.13
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	91.04
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	90.93
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	90.9
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	90.79
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.67
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	90.65
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	90.59
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	90.52
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	90.46
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	90.29
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	90.14
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	88.72
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	88.68
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	88.65
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	88.61
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	88.49
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	88.46
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	88.44
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	88.36
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	88.3
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	88.02
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	88.02
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	87.99
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	87.49
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	87.27
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	86.54
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	85.99
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	85.76
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	84.85
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	84.17
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	83.99
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	83.02
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	82.43
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	81.57
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	80.29

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.1e-30  Score=251.18  Aligned_cols=244  Identities=23%  Similarity=0.323  Sum_probs=151.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeee-eCCcEEeecceEEecCCCCCCChHHHHHHhcCCccc
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEK-FGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTC   86 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~~   86 (496)
                      ||||||||++||+||++|+++|+ +|+|||+++++|||++|.+ .++..+|.|+++++.    .+++++++++++|++..
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~-~V~VlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~----~~~~~~~l~~~lgl~~~   75 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGL-NVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGP----TQNRILRLAKELGLETY   75 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTC-CEEEEESSSSSBTTCCEECCTTTSCEESSCCEECT----TCHHHHHHHHHTTCCEE
T ss_pred             CEEEECCCHHHHHHHHHHHhCCC-CEEEEecCCCCcceeeEEECCCCcEEeCCceEeCC----CChHHHHHHHHcCCcce
Confidence            89999999999999999999999 6999999999999999977 468999999999988    88899999999999765


Q ss_pred             cccCCCcceEEEcCCCcc---------cChhHHHHHHHHHHHHHHHHhccccc----cc--------hhHHHHHHhhhcC
Q 010995           87 FSDYTNARYNIYDRSGKI---------IPSGVAADSYKKAVESAIANLKNLEA----TN--------SNIGEVIKAATEL  145 (496)
Q Consensus        87 ~~~~~~~~~~~~~~~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--------~~~~~~~~~~~~~  145 (496)
                      ......  ...+..+...         ..........................    ..        .++..++...   
T Consensus        76 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  150 (383)
T d2v5za1          76 KVNEVE--RLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKL---  150 (383)
T ss_dssp             ECCCSS--EEEEEETTEEEEECSSSCCCCSHHHHHHHHHHHHHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHHHHHH---
T ss_pred             eccCcc--ceEEecCcccccccccccchhhhhhhhhHHHHHHHHHHhhhhcccccccchhhhhhhhhhHHHHHHHHh---
Confidence            432211  1122112111         11111111111111111111111100    00        0122222210   


Q ss_pred             CCCCCChHHHHHHHHHhhccccc--------------cC-CcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCc
Q 010995          146 PSSPKTPLELAIDFILHDFEMAE--------------VE-PISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKI  210 (496)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~  210 (496)
                       .. ...................              .. ..................+|++.+.+++++.         
T Consensus       151 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------  219 (383)
T d2v5za1         151 -CW-TESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDL---------  219 (383)
T ss_dssp             -CS-SHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCTHHHHHHHHHH---------
T ss_pred             -cc-chHHHHHHHHhhhhhhccccchhhHHHHHHHHHhhcccccccccccCcceeeeccchhHHHHHHHHH---------
Confidence             00 0000001110000000000              00 0000000111112233468899999999887         


Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAI  274 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i  274 (496)
                      .|++|++|++|++|..++++|.|++.+|++++||+||+|+|+..+.+  +.|.|++|..+.+.+
T Consensus       220 ~g~~i~~~~~v~~I~~~~~~v~v~~~~g~~~~ad~vI~a~p~~~~~~--~~~~p~l~~~~~~~~  281 (383)
T d2v5za1         220 LGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMK--IHFNPPLPMMRNQMI  281 (383)
T ss_dssp             HGGGEEESCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGGGGG--SEEESCCCHHHHHHT
T ss_pred             cCCeEEecCcceEEEecCCeEEEEECCCCEEECCEEEECCCHHHHhh--CccCCCCCHHHHHHH
Confidence            68999999999999999999999999999999999999999999987  668888887655443

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.97  E-value=1.3e-28  Score=231.96  Aligned_cols=328  Identities=45%  Similarity=0.783  Sum_probs=189.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhc-CCcc
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKS-GLRT   85 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~l-gl~~   85 (496)
                      +||+|||||+|||+||+.|+++|+++|+|||+++++|||++|.+.+|+.+|.|+++++.........+..+.... .+..
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRN   80 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETTEEEESSCCEEEEESSSSCCTHHHHHHTTSCCCE
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEEEeccCCEEEecCCeEEeccchhhhhHHHhhhcccccccc
Confidence            589999999999999999999996359999999999999999999999999999999872222223344444332 2222


Q ss_pred             ccccCCCcceEEEcCCCcccChhHHHHH---HHHH---HHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHH
Q 010995           86 CFSDYTNARYNIYDRSGKIIPSGVAADS---YKKA---VESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDF  159 (496)
Q Consensus        86 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (496)
                      ............+..++..++.......   ....   .+........................................
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (347)
T d1b5qa1          81 FRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKLSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDY  160 (347)
T ss_dssp             EECCCTTGGGCEEETTSSBCCHHHHHHHHHHHHHHHHHHHHHHHTSCTTSTTCCBHHHHHHHHHTSSSSCCSHHHHHHHH
T ss_pred             ccccccccccceecccccccchhhhhhhhhhhHHHHHHHHHHHhhhccccccchhhhhhhccccccccccccccccchhh
Confidence            2222222222344455555543322211   1111   111111111111111111111111011111111222222222


Q ss_pred             HHhhccccc------c---CCcccccccCCcceeeeCcccHHHHHHHHHHhhccCC--CCCccccceeeCceeEEEEEcC
Q 010995          160 ILHDFEMAE------V---EPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTS--DGKILDNRLKLNKVVRELQHSR  228 (496)
Q Consensus       160 ~~~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~--~~~~~g~~i~~~~~V~~I~~~~  228 (496)
                      .........      .   ..............+.....+................  .....+.+++++++|..|...+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~  240 (347)
T d1b5qa1         161 YKFDYEFAEPPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSP  240 (347)
T ss_dssp             HHTHHHHSSCTTTBBSTTTSSCHHHHHHCSEEEEECCTTCTTHHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECS
T ss_pred             hccchhhcccchhhhhhhhhhhhhhhhccccccccccccccceeecccccchhHHHHHHhhhcccccccccccccccccC
Confidence            211111000      0   0000011111222222333344444443333221111  0111578899999999999999


Q ss_pred             CceEEEeCCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHHhhCCCcceeEEEEEcCCCCCCCCCCCceEEeecC
Q 010995          229 NGVTVKTEDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAIEKCDVMVYTKIFLKFPCKFWPCSPGKEFFIYAHE  308 (496)
Q Consensus       229 ~~v~V~~~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i~~~~~~~~~~v~l~~~~~~w~~~~~~~~~~~~~~  308 (496)
                      +++.|++.+|+.+.+|++|+++|...+...++.|.|+||..+..++.+..+...                          
T Consensus       241 ~~v~v~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~~~~~~~~--------------------------  294 (347)
T d1b5qa1         241 GGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGV--------------------------  294 (347)
T ss_dssp             SCEEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSCBTTC--------------------------
T ss_pred             ccEEEEECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHHhcCCccc--------------------------
Confidence            999999999999999999999999999987788889998877766643211000                          


Q ss_pred             CCCccccceeccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHHHhcCCCCCCCCeeEecccCCCCCCCcccCC
Q 010995          309 RRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQDMFGPDIPNATDILVPRWWNNRFQRGSYSN  388 (496)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~~~~~~~~~~~~~~~~~rw~~~~~~~g~~~~  388 (496)
                          .                                                                           
T Consensus       295 ----~---------------------------------------------------------------------------  295 (347)
T d1b5qa1         295 ----N---------------------------------------------------------------------------  295 (347)
T ss_dssp             ----C---------------------------------------------------------------------------
T ss_pred             ----c---------------------------------------------------------------------------
Confidence                0                                                                           


Q ss_pred             CCCCCChHHHHHHhCCCCcEEEccccccCcCCccchHHHHHHHHHHHHHHHHHhccc
Q 010995          389 YPIISDNQLVNSIRAPVAGIFFTGEHTSERFNGYVHGGYLAGIDTGKAVVEKIRKDN  445 (496)
Q Consensus       389 ~~~g~~~~~~~~~~~p~~~l~~aGd~~~~~~~g~~egA~~SG~~aA~~il~~l~~~~  445 (496)
                            ....+.+++|.+|||||||+++..++++++||+.||++||+.|+..++++-
T Consensus       296 ------~~~~~~~~~~~~~v~~~GD~~~~~~~~~~~gA~~sG~~aA~~l~~~~~~~~  346 (347)
T d1b5qa1         296 ------RYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQKKM  346 (347)
T ss_dssp             ------HHHHHHHHCCBTTEEECSGGGCSSCTTSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             ------ccchhhcccccCCEEEEEccccCcCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence                  001122344678999999999987788999999999999999999987653

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.97  E-value=2.4e-29  Score=244.06  Aligned_cols=247  Identities=25%  Similarity=0.299  Sum_probs=149.7

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeC--CcEEeecceEEecCCCCCCChHHHHHHhc
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFG--GVSVELGAGWIAGVGGKESNPVWELASKS   81 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~--g~~~d~G~~~~~~~~~~~~~~~~~l~~~l   81 (496)
                      ...++|+|||||++||+||++|+++|+ +|+|||+++++||++.|.+.+  ++.+|.|++++..    .+..+.++++++
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~~~~GG~~~t~~~~~~g~~~d~G~~~~~~----~~~~~~~l~~~~  102 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPE----KHRIVREYIRKF  102 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEET----TCHHHHHHHHHT
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCCCCCCeeEEEecCCCCceeccCceeecC----ccHHHHHHHHHh
Confidence            456799999999999999999999999 799999999999999998754  7899999999987    888899999999


Q ss_pred             CCccccccCCCcceEEEcCCCcccChh--------------------HHHHHHHHHHHHHHHHhccccc-------cchh
Q 010995           82 GLRTCFSDYTNARYNIYDRSGKIIPSG--------------------VAADSYKKAVESAIANLKNLEA-------TNSN  134 (496)
Q Consensus        82 gl~~~~~~~~~~~~~~~~~~g~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~-------~~~~  134 (496)
                      ++.............++ ..+......                    .....+................       ....
T Consensus       103 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (370)
T d2iida1         103 DLRLNEFSQENDNAWYF-IKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYS  181 (370)
T ss_dssp             TCCEEEECSCCTTSEEE-ETTEEEEHHHHHHCGGGGCCCCCGGGTTCCHHHHHHHHTHHHHHHHHHSCHHHHHHHHTTSB
T ss_pred             CCccceeeccCCceEEe-cCCccccchhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhccchh
Confidence            98754422222111122 222211100                    0001111111110000000000       0000


Q ss_pred             HHHHHHhhhcCCCCCCChHHHHHHHHHhhccccccCCcc------cccccCCcceeeeCcccHHHHHHHHHHhhccCCCC
Q 010995          135 IGEVIKAATELPSSPKTPLELAIDFILHDFEMAEVEPIS------TYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDG  208 (496)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~  208 (496)
                      ...++..    .... .  ......+.............      ....+.....+....+|++.++++|++.       
T Consensus       182 ~~~~~~~----~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------  247 (370)
T d2iida1         182 TKEYLIK----EGDL-S--PGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAMYRD-------  247 (370)
T ss_dssp             HHHHHHH----TSCC-C--HHHHHHHHHHTTCGGGTTSBHHHHHHHHHHHTTCCCEEEETTCTTHHHHHHHHH-------
T ss_pred             HHHHHHH----hccc-c--HHHHHHhhccccccchhhhHHHhhhhhhhhhccccccccchhhHHHHHHHHHHh-------
Confidence            1111111    0000 0  00111111100000000000      0011122233445678999999999887       


Q ss_pred             CccccceeeCceeEEEEEcCCceEEEe----CCCcEEEcCEEEEecChHHHhcCCcccCCCCcHHHHHHH
Q 010995          209 KILDNRLKLNKVVRELQHSRNGVTVKT----EDGCVYEANYVILSASIGVLQSDLISFKPPLPKWKTEAI  274 (496)
Q Consensus       209 ~~~g~~i~~~~~V~~I~~~~~~v~V~~----~~G~~~~ad~VI~A~p~~~l~~~li~~~p~l~~~~~~~i  274 (496)
                        .|++|++|++|++|..++++++|..    .++++++||+||+|+|+.++++  +.|.|+|++.+.+++
T Consensus       248 --~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~--i~~~p~l~~~~~~ai  313 (370)
T d2iida1         248 --IQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRL--IKFNPPLLPKKAHAL  313 (370)
T ss_dssp             --TGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTT--SEEESCCCHHHHHHH
T ss_pred             --cCCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCHHHHhh--CccCCCCCHHHHHHH
Confidence              6899999999999999999987654    2346899999999999999986  778888887666554

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.3e-25  Score=219.12  Aligned_cols=99  Identities=32%  Similarity=0.558  Sum_probs=84.2

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGL   83 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl   83 (496)
                      .+..+|||||||+|||+||+.|+++|+ +|+||||++++|||++|.+.+|+.+|+|+++++.   ..++.+.+|++++|+
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa~~r~GGr~~t~~~~g~~~d~G~~~i~~---~~~~~~~~l~~~lgl   78 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEARDRVGGRVATFRKGNYVADLGAMVVTG---LGGNPMAVVSKQVNM   78 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECSSSSSBTTCCEEEETTEEEESSCCEECC---SBTCHHHHHHHHHTC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCCCCcccEEEEEeCCEEEECCCEEECC---CCCcHHHHHHHHcCC
Confidence            467789999999999999999999999 7999999999999999999999999999999986   356788999999999


Q ss_pred             ccccccCCCcceEEEcCCCcccChhH
Q 010995           84 RTCFSDYTNARYNIYDRSGKIIPSGV  109 (496)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~g~~~~~~~  109 (496)
                      +....+..   ..++..+|..++...
T Consensus        79 ~~~~~~~~---~~~~~~~g~~~~~~~  101 (449)
T d2dw4a2          79 ELAKIKQK---CPLYEANGQAVPKEK  101 (449)
T ss_dssp             CEEECCCC---CCEECTTSCBCCHHH
T ss_pred             cceecCCC---ceEEecCCcEeeccc
Confidence            86553222   346678888776443

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.92  E-value=8.5e-25  Score=209.51  Aligned_cols=76  Identities=32%  Similarity=0.469  Sum_probs=71.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCccc
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTC   86 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~~   86 (496)
                      ++|+|||||+|||+||++|+++|+ +|+|||+++++|||++|.+.+|+.+|.|+++++.    .+..+.++++++++...
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~~~~~GG~~~t~~~~g~~~d~G~~~~~~----~~~~~~~~~~~~~~~~~   76 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTE----SEGDVTFLIDSLGLREK   76 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSC-EEEEECSSSSSCSSCCEEEETTEEEESSCCCBCC----CSHHHHHHHHHTTCGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-CEEEEeCCCCCcCceEEeccCCEEEecCceEEeC----CCHHHHHHHHHhCCccc
Confidence            679999999999999999999999 7999999999999999999999999999999988    88899999999998765


Q ss_pred             c
Q 010995           87 F   87 (496)
Q Consensus        87 ~   87 (496)
                      .
T Consensus        77 ~   77 (373)
T d1seza1          77 Q   77 (373)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.91  E-value=1.7e-24  Score=206.42  Aligned_cols=75  Identities=29%  Similarity=0.488  Sum_probs=71.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCcccc
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRTCF   87 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~~~   87 (496)
                      ||+|||||++||+||++|+++|+ +|+|||+++++||+++|.+.+|+.+|.|++++..    .++.+.++++++++....
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~-~V~vlE~~~~~GG~~~t~~~~g~~~d~G~~~~~~----~~~~~~~l~~~~~~~~~~   76 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGT-DAVLLESSARLGGAVGTHALAGYLVEQGPNSFLD----REPATRALAAALNLEGRI   76 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTC-CEEEECSSSSSBTTCCEEEETTEEEESSCCCEET----TCHHHHHHHHHTTCGGGE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-CEEEEecCCCCCceEEEEeeCCEEEecCceEEec----CCHHHHHHHHHhcccccc
Confidence            79999999999999999999999 6999999999999999999999999999999998    788899999999988665

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=6.1e-21  Score=176.55  Aligned_cols=224  Identities=15%  Similarity=0.207  Sum_probs=124.0

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeC------------------------CcEEeec
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFG------------------------GVSVELG   59 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~------------------------g~~~d~G   59 (496)
                      ...+||||||||++||+||+.|+++|+ +|+|||+++++||+++|.+.+                        ++.+|.+
T Consensus         3 ~~~yDviViGaG~~Gl~~A~~La~~G~-~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   81 (297)
T d2bcgg1           3 DTDYDVIVLGTGITECILSGLLSVDGK-KVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLI   81 (297)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCGGGCEECHHHHHHHHCSSCCCHHHHHHHHCCGGGCCEESS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCC-CEEEEcCCCCCCcceEEeeccccccccCCCccccccccccccccccceeccC
Confidence            458999999999999999999999999 699999999999999986532                        2457777


Q ss_pred             ceEEecCCCCCCChHHHHHHhcCCccccccCCCcceEEEcCCCcc--cChhHHHH------------HHHHHHHHHHHHh
Q 010995           60 AGWIAGVGGKESNPVWELASKSGLRTCFSDYTNARYNIYDRSGKI--IPSGVAAD------------SYKKAVESAIANL  125 (496)
Q Consensus        60 ~~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~------------~~~~~~~~~~~~~  125 (496)
                      ++.+..     ...+..++.+.+...... +..........++..  ++......            .+..+.+......
T Consensus        82 ~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (297)
T d2bcgg1          82 PKFLMA-----NGELTNILIHTDVTRYVD-FKQVSGSYVFKQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYK  155 (297)
T ss_dssp             CCBEET-----TSHHHHHHHHHTGGGTCC-EEECCCEEEEETTEEEECCSSHHHHHHCTTSCHHHHHHHHHHHHHHHHCB
T ss_pred             cccccC-----CCcceeeeeecccccccc-ccccCcccccccCCccccccchhhhhhccccccccchhhhhhhhhhhhhh
Confidence            777654     345555555555433221 110001112233332  22211110            1111111111111


Q ss_pred             ccc----cc---cchhHHHHHHhhhcCCCCCCChHHHHHHHHHhhccccc------cCC---cc-------cccccCCcc
Q 010995          126 KNL----EA---TNSNIGEVIKAATELPSSPKTPLELAIDFILHDFEMAE------VEP---IS-------TYVDFGERE  182 (496)
Q Consensus       126 ~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---~~-------~~~~~~~~~  182 (496)
                      ...    ..   ....+.+++...    ..    .....+++........      ...   ..       ....+.. .
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  226 (297)
T d2bcgg1         156 EDDLSTHQGLDLDKNTMDEVYYKF----GL----GNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGK-S  226 (297)
T ss_dssp             TTBGGGSTTCCTTTSBHHHHHHHT----TC----CHHHHHHHHHHTSCCSSSGGGGSBHHHHHHHHHHHHHHHHHHSS-C
T ss_pred             hccccchhhhcccchhhhhhhhhh----cc----CHHHHHHHHHHHhhhccccccchhhhhhhhhhhhhhhccccccc-C
Confidence            000    00   011234444320    00    0011111111000000      000   00       0000111 2


Q ss_pred             eeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcC--CceEEEeCCCcEEEcCEEEEe
Q 010995          183 FLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSR--NGVTVKTEDGCVYEANYVILS  249 (496)
Q Consensus       183 ~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~--~~v~V~~~~G~~~~ad~VI~A  249 (496)
                      .+.++++|++.++++|++.+++      .|++|++|++|++|..++  +++.+.+.+|++++||+||++
T Consensus       227 ~~~~~~gG~~~l~~~l~~~~~~------~G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~~  289 (297)
T d2bcgg1         227 PYLYPMYGLGELPQGFARLSAI------YGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIAD  289 (297)
T ss_dssp             SEEEETTCTTHHHHHHHHHHHH------TTCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEEC
T ss_pred             cceeccCcHHHHHHHHHHHHHh------cCCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEECCEEEEC
Confidence            3445689999999999999887      799999999999998754  446645568889999999986

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.68  E-value=3e-17  Score=154.88  Aligned_cols=73  Identities=27%  Similarity=0.526  Sum_probs=65.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeee---eCCcEEeecceEEecCCCCCCChHHHHHHhc
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEK---FGGVSVELGAGWIAGVGGKESNPVWELASKS   81 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~---~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~l   81 (496)
                      ++++|+|||||+|||+||+.|+++|+ +|+|+|+++++||+++|..   .++..++.|+|.|+.    ....++++++++
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk~~~iGG~~~t~~~~~~g~~~~~~Gphif~t----~~~~v~~~~~~~   75 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHT----DNETVWNYVNKH   75 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEE----SCHHHHHHHHTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCC-CEEEEECCCCCcCeeeEEEecCCCceEEecCceeecC----ccHHHHHHHHHh
Confidence            36789999999999999999999999 7999999999999999875   457888999999998    788899999876


Q ss_pred             C
Q 010995           82 G   82 (496)
Q Consensus        82 g   82 (496)
                      .
T Consensus        76 ~   76 (314)
T d2bi7a1          76 A   76 (314)
T ss_dssp             S
T ss_pred             h
Confidence            5

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.61  E-value=8.9e-16  Score=142.84  Aligned_cols=57  Identities=18%  Similarity=0.202  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      ...++..|.+.+++      .|+++++|++|++|+.++++|.|.|.+| ++.||+||+|+.+..
T Consensus       149 p~~~~~~l~~~a~~------~Gv~i~~~~~V~~i~~~~~~v~V~t~~g-~i~a~~VViAaG~~s  205 (281)
T d2gf3a1         149 SENCIRAYRELAEA------RGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWN  205 (281)
T ss_dssp             HHHHHHHHHHHHHH------TTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGH
T ss_pred             cccccccccccccc------ccccccCCcEEEEEEEECCEEEEEECCc-EEEcCEEEECCCCcc
Confidence            45677778777776      7999999999999999999999999887 799999999998654

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.54  E-value=9.6e-15  Score=133.30  Aligned_cols=58  Identities=16%  Similarity=0.215  Sum_probs=49.9

Q ss_pred             ccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCCCcEEEcCEEEEecCh
Q 010995          189 RGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDGCVYEANYVILSASI  252 (496)
Q Consensus       189 ~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~A~p~  252 (496)
                      .....+.+.|.+.+++      .|++|+++++|++|..+++++. |.+.+|++++||+||+|+..
T Consensus       107 ~~~~~i~~~L~~~~~~------~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vI~AtGg  165 (251)
T d2i0za1         107 NKAQSVVDALLTRLKD------LGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGG  165 (251)
T ss_dssp             CCHHHHHHHHHHHHHH------TTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCC
T ss_pred             ccHHHHHHHHHHHHHH------cCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecCeEEEccCC
Confidence            3456788888888776      7999999999999999888875 88889999999999999975

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.54  E-value=2.8e-14  Score=134.13  Aligned_cols=57  Identities=25%  Similarity=0.204  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceE-EEeCCCcEEEcCEEEEecChHH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVT-VKTEDGCVYEANYVILSASIGV  254 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VI~A~p~~~  254 (496)
                      ...+...|.+.+.+      .|++|+.+++|++|..++++++ |.|++| +++||+||+|+.+..
T Consensus       147 p~~l~~~l~~~a~~------~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~s  204 (305)
T d1pj5a2         147 AARAVQLLIKRTES------AGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWG  204 (305)
T ss_dssp             HHHHHHHHHHHHHH------TTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             hhhhhhhHHhhhhc------ccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchhH
Confidence            45677777777666      7999999999999999999977 889887 899999999998653

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.53  E-value=6.3e-15  Score=136.57  Aligned_cols=56  Identities=14%  Similarity=0.094  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          191 YAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       191 ~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      ...++..|.+.+.+      .|++|+.+++|++|+.+++.+.|+|.+| ++.||.||+|+.+.
T Consensus       150 ~~~~~~~l~~~~~~------~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~vV~AaG~~  205 (276)
T d1ryia1         150 PYFVCKAYVKAAKM------LGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVW  205 (276)
T ss_dssp             HHHHHHHHHHHHHH------TTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGG
T ss_pred             cccchhHHHHHHHH------cCCEEecceEEEeEEeecceEEEecCCe-EEEcCEEEECCCcc
Confidence            45677888777766      7999999999999999888899999887 89999999999864

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=1.9e-15  Score=141.44  Aligned_cols=72  Identities=22%  Similarity=0.443  Sum_probs=66.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEE-eecceEEecCCCCCCChHHHHHHhcC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSV-ELGAGWIAGVGGKESNPVWELASKSG   82 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~-d~G~~~~~~~~~~~~~~~~~l~~~lg   82 (496)
                      |+||+|||||+|||+||++|+++|+ +|+|+|+++++||+++|....|..+ +.|+|.|+.    ..+.+++++.++.
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~-~V~iiEk~~~iGG~~~t~~~~g~~~~~~G~h~f~t----~~~~v~~~~~~~~   73 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNK-KVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHT----NDKYIWDYVNDLV   73 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTC-CEEEECSSSSSSGGGCEEEETTEEEETTSCCCEEE----SCHHHHHHHHTTS
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCC-cEEEEECCCCcccceEEeCcCCEEEeecCcEEEEe----cchHHHHHhhccc
Confidence            5799999999999999999999999 6999999999999999998888776 789999998    8889999998755

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.52  E-value=4.9e-15  Score=135.45  Aligned_cols=41  Identities=32%  Similarity=0.569  Sum_probs=37.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      +.+||+|||||+|||+||+.|+++|. +|+|||+++.+|+++
T Consensus         3 ~~~DViIIGaG~aGl~aA~~la~~G~-~V~vlEk~~~~G~k~   43 (253)
T d2gqfa1           3 QYSENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNGKKIGRKI   43 (253)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCHHH
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCCCCce
Confidence            47899999999999999999999999 699999999998643

>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.51  E-value=3.6e-14  Score=112.04  Aligned_cols=109  Identities=60%  Similarity=1.165  Sum_probs=89.2

Q ss_pred             CcceeEEEEEcCCCCCCCCCCCceEEeecCCCCccccceeccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHH
Q 010995          279 VMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQ  358 (496)
Q Consensus       279 ~~~~~~v~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~  358 (496)
                      |+.+.||++.|+++||++...........++.+....|..+.....+.++|++++.|+.+.+++.++++++++.+++.|+
T Consensus         2 MG~~~Ki~l~F~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~~~~G~~a~~~~~l~~~~~~~~~l~~L~   81 (112)
T d1b5qa2           2 MAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLR   81 (112)
T ss_dssp             EECEEEEEEECSSCCSCCSTTCSEEEEECSSTTSSCEEEECTTTSTTCCEEEEEEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             cccEEEEEEEECCCCCCCCCCEEEEEeecCCCCeeEEEEEcccCCCCCCEEEEEeCcHHHHHHHhCCHHHHHHHHHHHHH
Confidence            57789999999999998854444444444445555556555444457789999999999999999999999999999999


Q ss_pred             HhcCC-CCCCCCeeEecccCCCCCCCcccC
Q 010995          359 DMFGP-DIPNATDILVPRWWNNRFQRGSYS  387 (496)
Q Consensus       359 ~~~~~-~~~~~~~~~~~rw~~~~~~~g~~~  387 (496)
                      ++|+. ..+++..+.+++|..+||++|+|+
T Consensus        82 ~~~~~~~~~~~~~~~~t~W~~dp~~~GsYS  111 (112)
T d1b5qa2          82 KMFPGKDVPDATDILVPRWWSDRFYKGTFS  111 (112)
T ss_dssp             HHCTTSCCCCCSEEECCCTTTCTTTSSSEE
T ss_pred             HHhCcccccCCCEEEeccCCCCCCccccCC
Confidence            99974 457899999999999999999997

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.44  E-value=6.7e-13  Score=121.71  Aligned_cols=152  Identities=20%  Similarity=0.264  Sum_probs=98.6

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcC
Q 010995            3 STSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSG   82 (496)
Q Consensus         3 ~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lg   82 (496)
                      ++...+|+|||||++||+||..|+++|+ +|+|||+++.++...            |... .     .+++..++++++|
T Consensus         1 ~~~~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~~~~~~~~------------~~g~-~-----~~~~~~~~l~~~g   61 (265)
T d2voua1           1 SPTTDRIAVVGGSISGLTAALMLRDAGV-DVDVYERSPQPLSGF------------GTGI-V-----VQPELVHYLLEQG   61 (265)
T ss_dssp             CCCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSSCCCC------------SCEE-E-----CCHHHHHHHHHTT
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCCCCCCC------------ceEE-E-----ECccHHHHHHHcC
Confidence            3567899999999999999999999999 799999987654211            1111 1     3456778889999


Q ss_pred             CccccccCCCcceEEEc-CCCcccChhHHHHHHHHHHHHHHHHhccccccchhHHHHHHhhhcCCCCCCChHHHHHHHHH
Q 010995           83 LRTCFSDYTNARYNIYD-RSGKIIPSGVAADSYKKAVESAIANLKNLEATNSNIGEVIKAATELPSSPKTPLELAIDFIL  161 (496)
Q Consensus        83 l~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (496)
                      +...............+ .++...                                                        
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------------   85 (265)
T d2voua1          62 VELDSISVPSSSMEYVDALTGERV--------------------------------------------------------   85 (265)
T ss_dssp             CCGGGTCBCCCEEEEEETTTCCEE--------------------------------------------------------
T ss_pred             cchhhhccCCCcceeEeccCCcee--------------------------------------------------------
Confidence            86554211111111111 111110                                                        


Q ss_pred             hhccccccCCcccccccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEE
Q 010995          162 HDFEMAEVEPISTYVDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVY  241 (496)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~  241 (496)
                                 .. ...      .........+...+....        .+.+++++++|+++...+++++|+++||+++
T Consensus        86 -----------~~-~~~------~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~  139 (265)
T d2voua1          86 -----------GS-VPA------DWRFTSYDSIYGGLYELF--------GPERYHTSKCLVGLSQDSETVQMRFSDGTKA  139 (265)
T ss_dssp             -----------EE-EEC------CCCEEEHHHHHHHHHHHH--------CSTTEETTCCEEEEEECSSCEEEEETTSCEE
T ss_pred             -----------cc-ccc------ccccchhHHHHHHHHHhc--------ccceeecCcEEEEEEeeCCceEEEECCCCEE
Confidence                       00 000      000112333444444332        5678999999999999999999999999999


Q ss_pred             EcCEEEEecChHHH
Q 010995          242 EANYVILSASIGVL  255 (496)
Q Consensus       242 ~ad~VI~A~p~~~l  255 (496)
                      ++|.+|.|.+....
T Consensus       140 ~~d~~v~adG~~s~  153 (265)
T d2voua1         140 EANWVIGADGGASV  153 (265)
T ss_dssp             EESEEEECCCTTCH
T ss_pred             EEEEEecccccccc
Confidence            99999999875443

>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.5e-13  Score=108.47  Aligned_cols=111  Identities=14%  Similarity=0.225  Sum_probs=82.7

Q ss_pred             CCcceeEEEEEcCCCCCCCCCCCceEEeecCCCCccccceeccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHH
Q 010995          278 DVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVL  357 (496)
Q Consensus       278 ~~~~~~~v~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L  357 (496)
                      +|+.+.||++.|+++||++..-.+.....++.......+... ....+.++|++++.++.+..+..++++|+++.+++.|
T Consensus         1 pmG~~~Kv~l~f~~~FW~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~vL~~~~~G~~a~~~~~ls~~e~~~~~l~~L   79 (112)
T d2v5za2           1 PLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDT-KPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELY   79 (112)
T ss_dssp             CBCCEEEEEEECSSCGGGGGTEEEEEEECSTTCSCSEEEECC-CTTSCSCEEEEEEETHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             CchheEEEEEEcCCCCCCCCCceeeEEecCCCCcEEEEccCc-CccCCCcEEEEEeCcHHHHHHHhCCHHHHHHHHHHHH
Confidence            578899999999999998732112222222222211122211 2223467999999999999999999999999999999


Q ss_pred             HHhcCC-CCCCCCeeEecccCCCCCCCcccCCC
Q 010995          358 QDMFGP-DIPNATDILVPRWWNNRFQRGSYSNY  389 (496)
Q Consensus       358 ~~~~~~-~~~~~~~~~~~rw~~~~~~~g~~~~~  389 (496)
                      +++||. .++++.++.+++|.++||++|+|+.+
T Consensus        80 ~~~~g~~~~~~~~~~~~~~W~~dp~~~GsYs~~  112 (112)
T d2v5za2          80 AKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTY  112 (112)
T ss_dssp             HHHHTCGGGGCCSEEEEEEGGGCTTTCSSSCBC
T ss_pred             HHHhCccccCCccEEEEcccCCCCccCcccccc
Confidence            999985 45789999999999999999999854

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.38  E-value=4.8e-13  Score=127.33  Aligned_cols=43  Identities=28%  Similarity=0.404  Sum_probs=37.8

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCC--CCcEEEEeeCCCCCeEEE
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENG--IEDILILEASDRIGGRVR   47 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G--~~~V~vlEa~~~~GGr~~   47 (496)
                      +..++|+|||||+|||+||+.|++.|  . +|+|||+++.+||.-.
T Consensus         2 ~~~KrVaIIGaG~sGl~~A~~L~~~~~~~-~v~vfEk~~~iGG~W~   46 (335)
T d2gv8a1           2 PTIRKIAIIGAGPSGLVTAKALLAEKAFD-QVTLFERRGSPGGVWN   46 (335)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTCCS-EEEEECSSSSSSTTCS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHHhCCCC-CEEEEECCCCCCCccc
Confidence            45789999999999999999998876  5 6999999999998543

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.35  E-value=6.7e-13  Score=123.37  Aligned_cols=41  Identities=32%  Similarity=0.533  Sum_probs=38.2

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR   45 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr   45 (496)
                      ++..||+|||||+|||++|++|.++|+ +|+|||+++.+||.
T Consensus         5 ~~~~dV~IIGAG~sGl~~a~~L~~~G~-~v~i~Ek~~~iGGt   45 (298)
T d1w4xa1           5 PEEVDVLVVGAGFSGLYALYRLRELGR-SVHVIETAGDVGGV   45 (298)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCTH
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCC-CEEEEEcCCCcccc
Confidence            456799999999999999999999999 79999999999983

>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.1e-12  Score=101.06  Aligned_cols=107  Identities=21%  Similarity=0.356  Sum_probs=80.2

Q ss_pred             CcceeEEEEEcCCCCCCCCCCCceEEeecCCCCccccceeccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHHH
Q 010995          279 VMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVLQ  358 (496)
Q Consensus       279 ~~~~~~v~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L~  358 (496)
                      |+.+.||++.|+++||++..  ..+.......+....+.... ...+.++|++++.++.+..++.++++++++.++++|+
T Consensus         2 ~G~~~Kv~l~f~~~FW~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~vL~~~~~G~~a~~~~~l~~~~~~~~~l~~L~   78 (109)
T d2dw4a3           2 FGNLNKVVLCFDRVFWDPSV--NLFGHVGSTTASRGELFLFW-NLYKAPILLALVAGEAAGIMENISDDVIVGRCLAILK   78 (109)
T ss_dssp             ECCCEEEEEECSSCCSCTTC--SEEEECCSSSTTTTTTCEEE-CC--CCEEEEEECHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             CChhEEEEEEECCCCCCCCC--CEeEEEecCCCCceEEeecc-CCCCCCEEEEEECcHHHHHHHhcCHHHHHHHHHHHHH
Confidence            57789999999999998732  22222222222222222221 2346679999999999999999999999999999999


Q ss_pred             HhcCCC-CCCCCeeEecccCCCCCCCcccCC
Q 010995          359 DMFGPD-IPNATDILVPRWWNNRFQRGSYSN  388 (496)
Q Consensus       359 ~~~~~~-~~~~~~~~~~rw~~~~~~~g~~~~  388 (496)
                      ++++.. .+.+..+.+++|.++||++|+|++
T Consensus        79 ~~~~~~~~~~~~~~~~~~W~~dp~~~GsYSy  109 (109)
T d2dw4a3          79 GIFGSSAVPQPKETVVSRWRADPWARGSYSY  109 (109)
T ss_dssp             HHHCTTTCCCCSEEEECCTTTCTTTSSSCEE
T ss_pred             HHhCccccCcccEEEEeccCCCCccCEecCC
Confidence            999854 578999999999999999999973

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.32  E-value=1.2e-11  Score=115.95  Aligned_cols=39  Identities=28%  Similarity=0.607  Sum_probs=36.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      +.+||+|||||++||+||+.|+++|. +|+|+|+.+..||
T Consensus        15 e~~DVlVIG~G~aGl~aA~~la~~G~-~V~lvEK~~~~gG   53 (308)
T d1y0pa2          15 DTVDVVVVGSGGAGFSAAISATDSGA-KVILIEKEPVIGG   53 (308)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCCCC
Confidence            46899999999999999999999999 6999999998887

>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.27  E-value=2.1e-12  Score=101.84  Aligned_cols=108  Identities=13%  Similarity=0.101  Sum_probs=79.7

Q ss_pred             CCcceeEEEEEcCCCCCCCCCCCceEEeecCCCCccccceeccccCCCCcEEEEEeccccchhcccCCcHHHHHHHHHHH
Q 010995          278 DVMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQPDEETLKEAMEVL  357 (496)
Q Consensus       278 ~~~~~~~v~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~~~L  357 (496)
                      +|++..||++.|+++||++....+.....+.  ....+|........+.++|+++..++.+.++..++++++++.++++|
T Consensus         1 hy~~~~Kv~l~f~~~FW~~~g~~~~~~~td~--~~~~~~~~~~~~~~~~~vL~~~~~g~~a~~~~~l~~e~~~~~~l~~L   78 (113)
T d2iida2           1 HYRSGTKIFLTCTTKFWEDDGIHGGKSTTDL--PSRFIYYPNHNFTNGVGVIIAYGIGDDANFFQALDFKDCADIVFNDL   78 (113)
T ss_dssp             CEECEEEEEEEESSCGGGGGTCCSSEEEESS--TTCEEECCSSCCTTSCEEEEEEEEHHHHHTTTTSCHHHHHHHHHHHH
T ss_pred             CCccEEEEEEEcCCCCCCCcCCEeeEEEeCC--CceEEEeCCCCCCCCceEEEEEeCCchhHHHHcCCHHHHHHHHHHHH
Confidence            5788999999999999987322222333332  22233332222334567999998899999999999999999999999


Q ss_pred             HHhcCCCCC----CCCeeEecccCCCCCCCcccC
Q 010995          358 QDMFGPDIP----NATDILVPRWWNNRFQRGSYS  387 (496)
Q Consensus       358 ~~~~~~~~~----~~~~~~~~rw~~~~~~~g~~~  387 (496)
                      ++++|....    .+.+..+++|..+||++|+|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~W~~dp~~~GaYS  112 (113)
T d2iida2          79 SLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGIT  112 (113)
T ss_dssp             HHHHTCCHHHHHHHEEEEEEEEGGGCTTTCSSEE
T ss_pred             HHHcCCcccccccccCeEEEeecCCCCCccccCC
Confidence            999974322    246778899999999999986

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.26  E-value=2.7e-11  Score=114.29  Aligned_cols=40  Identities=30%  Similarity=0.568  Sum_probs=37.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR   45 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr   45 (496)
                      +..||+|||||++||+||+.|+++|. +|+|+|+.+..||.
T Consensus        22 et~DVvVIG~G~aGl~aA~~la~~G~-~V~llEk~~~~gG~   61 (322)
T d1d4ca2          22 ETTDVVIIGSGGAGLAAAVSARDAGA-KVILLEKEPIPGGN   61 (322)
T ss_dssp             EECSEEEECSSHHHHHHHHHHHTTTC-CEEEECSSSSSCTT
T ss_pred             CcceEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCCCCc
Confidence            46899999999999999999999999 69999999998883

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.23  E-value=4.6e-11  Score=112.35  Aligned_cols=41  Identities=22%  Similarity=0.556  Sum_probs=37.5

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR   45 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr   45 (496)
                      .+.+||+|||||++||+||++|+++|. +|+|+|+.+..||.
T Consensus        17 ~e~~DVvVIGaG~aGl~AA~~aa~~G~-~V~vlEK~~~~gG~   57 (317)
T d1qo8a2          17 SETTQVLVVGAGSAGFNASLAAKKAGA-NVILVDKAPFSGGN   57 (317)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTC-CEEEECSSSSSCTT
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCCCCc
Confidence            346899999999999999999999999 69999999988873

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.11  E-value=1.9e-10  Score=106.02  Aligned_cols=44  Identities=14%  Similarity=0.176  Sum_probs=36.8

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCC----cEEEcCEEEEecChHH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDG----CVYEANYVILSASIGV  254 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G----~~~~ad~VI~A~p~~~  254 (496)
                      .+..+.++++|+.+...++++.|++.+|    +++.+|.||.|-....
T Consensus       119 ~~~~~~~~~~v~~~~~~~~~v~v~~~~g~~~~~~~~ad~vi~ADG~~S  166 (288)
T d3c96a1         119 GQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHS  166 (288)
T ss_dssp             CTTSEEESEEEEEEEEETTEEEEEEEETTSCEEEEEESEEEECCCTTC
T ss_pred             cCeeeecCcEEEEeeecCCcEEEEEEcCCCCeEEEeeceeeccCCccc
Confidence            4778999999999999999988877665    4789999999876543

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=1.7e-10  Score=97.52  Aligned_cols=40  Identities=25%  Similarity=0.537  Sum_probs=37.8

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      ...++|+|||||+|||+||+.|+++|+ +|+|+|+.+++||
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~~~GG   80 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHSEIGG   80 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSSSCT
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccCccCc
Confidence            456899999999999999999999999 7999999999998

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.96  E-value=1.2e-09  Score=103.18  Aligned_cols=39  Identities=18%  Similarity=0.385  Sum_probs=35.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      ..+||+|||||+|||+||++|+++|. +|+|+|+....||
T Consensus         4 ~~~DVvVIG~G~AGl~AAl~aa~~G~-~V~liEK~~~~~g   42 (336)
T d2bs2a2           4 QYCDSLVIGGGLAGLRAAVATQQKGL-STIVLSLIPVKRS   42 (336)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTTTC-CEEEECSSCGGGS
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCC-CEEEEecCCCCCC
Confidence            46899999999999999999999999 6999999877665

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=5.1e-09  Score=82.01  Aligned_cols=41  Identities=17%  Similarity=0.289  Sum_probs=36.4

Q ss_pred             cccceeeCceeEEEEEcCC-ceEEEeCCCcEEEcCEEEEecC
Q 010995          211 LDNRLKLNKVVRELQHSRN-GVTVKTEDGCVYEANYVILSAS  251 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~-~v~V~~~~G~~~~ad~VI~A~p  251 (496)
                      .|+++++|+.|++|..+++ .++|++.+|+++++|.||+|+.
T Consensus        75 ~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          75 EGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             HSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             CCCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence            5899999999999998765 5789999999999999999974

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.91  E-value=5.6e-10  Score=103.37  Aligned_cols=64  Identities=33%  Similarity=0.513  Sum_probs=47.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHHhcCCcc
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELASKSGLRT   85 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~~lgl~~   85 (496)
                      +.||+|||||++||++|..|+++|+ +|+|||+++..+.      .+    +.++..+       .+...++++++|+..
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~~~~~~------~~----~~~~~~l-------~~~~~~~l~~lg~~~   63 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQTPDYV------LG----RIRAGVL-------EQGMVDLLREAGVDR   63 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTC-CEEEECSSCHHHH------HT----CCCCCEE-------CHHHHHHHHHTTCCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCCCCC------CC----CceEEEE-------CHHHHHHHHHcCchH
Confidence            5699999999999999999999999 6999999864321      00    1112222       235788999999875


Q ss_pred             cc
Q 010995           86 CF   87 (496)
Q Consensus        86 ~~   87 (496)
                      ..
T Consensus        64 ~l   65 (292)
T d1k0ia1          64 RM   65 (292)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=1.2e-08  Score=95.13  Aligned_cols=39  Identities=21%  Similarity=0.325  Sum_probs=34.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeCCCCCe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAEN--GIEDILILEASDRIGG   44 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~~~~GG   44 (496)
                      ..+||+|||+|+|||+||..++++  |. +|+|+|+....||
T Consensus         4 ~~~DVlVIG~G~AGl~AA~~a~~~~~g~-~V~lleK~~~~~g   44 (311)
T d1kf6a2           4 FQADLAIVGAGGAGLRAAIAAAQANPNA-KIALISKVYPMRS   44 (311)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHCTTC-CEEEEESSCGGGS
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCC-EEEEEECCCCCCC
Confidence            358999999999999999999987  67 6999999887766

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.82  E-value=1.4e-09  Score=98.76  Aligned_cols=42  Identities=31%  Similarity=0.429  Sum_probs=36.0

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            2 DSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         2 ~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      ...+++||||||||++||++|++|+++|+ +|+|+|+....+|
T Consensus         2 ~~~~~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~~~~~~   43 (268)
T d1c0pa1           2 MMHSQKRVVVLGSGVIGLSSALILARKGY-SVHILARDLPEDV   43 (268)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCTTCT
T ss_pred             CCCCCCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCCCCCCC
Confidence            33467799999999999999999999999 7999999764444

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.81  E-value=2.8e-08  Score=79.66  Aligned_cols=37  Identities=16%  Similarity=0.501  Sum_probs=33.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      ..++|+|||||.+|+-+|..|++.|. +|+|+|+++++
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~~~~   70 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTAARV   70 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSST
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCc-ceeeeeecccc
Confidence            35789999999999999999999999 79999987654

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.80  E-value=4e-08  Score=76.72  Aligned_cols=40  Identities=20%  Similarity=0.292  Sum_probs=34.3

Q ss_pred             cccceeeCceeEEEEEcC-CceEEEeCCCcEEE-cCEEEEec
Q 010995          211 LDNRLKLNKVVRELQHSR-NGVTVKTEDGCVYE-ANYVILSA  250 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~-~~v~V~~~~G~~~~-ad~VI~A~  250 (496)
                      .|+++++|+.|++|+..+ +.++|++.+|++++ +|.||+|+
T Consensus        76 ~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          76 NNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             TTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred             CCCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence            599999999999999765 45789999998774 79999985

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.80  E-value=7.6e-10  Score=99.14  Aligned_cols=40  Identities=25%  Similarity=0.257  Sum_probs=36.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCC-------CCcEEEEeeCCCCCeEE
Q 010995            6 RSPVIIIGAGVSGISAGKILAENG-------IEDILILEASDRIGGRV   46 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G-------~~~V~vlEa~~~~GGr~   46 (496)
                      .++|+|||||+|||+||++|+++|       + +|+|+|+.+++||.+
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~-~V~v~E~~~~~GG~~   48 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDM-AVDMLEMLPTPWGLV   48 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCE-EEEEEESSSSCSTHH
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCC-ceEEEecCCCCCCee
Confidence            468999999999999999999998       5 699999999999943

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.80  E-value=1.5e-09  Score=94.03  Aligned_cols=41  Identities=34%  Similarity=0.583  Sum_probs=37.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR   45 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr   45 (496)
                      ..++|+|||||++||+||.+|+++|+++|+|+|+++++||.
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~   43 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGL   43 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTH
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccch
Confidence            46899999999999999999999998459999999999884

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.79  E-value=1.9e-08  Score=79.05  Aligned_cols=41  Identities=20%  Similarity=0.140  Sum_probs=35.6

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCC---cEEEcCEEEEecC
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDG---CVYEANYVILSAS  251 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VI~A~p  251 (496)
                      .|++++++++|++|+.++++++|++.++   +++.||.||+|+.
T Consensus        76 ~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          76 QGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             TTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             cCceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            6899999999999999999988776544   5789999999974

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.77  E-value=2.1e-08  Score=87.23  Aligned_cols=33  Identities=36%  Similarity=0.568  Sum_probs=31.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      .|||||||||.||+.||.+.++.|. +++|+|.+
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~-ktllit~~   34 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGV-RVGLLTQS   34 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC-cEEEEEec
Confidence            6999999999999999999999999 69999986

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.77  E-value=1.8e-09  Score=95.52  Aligned_cols=41  Identities=29%  Similarity=0.469  Sum_probs=38.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      ..|||+|||||++||+||..+++.|. +|+|+|+++.+||.+
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~-kV~vie~~~~~GG~~   42 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGF-KTTCIEKRGALGGTC   42 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTC-CEEEEECSSSSCCSH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC-cEEEEEecCCCCCee
Confidence            57999999999999999999999999 699999999999854

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.76  E-value=1.3e-08  Score=80.40  Aligned_cols=37  Identities=30%  Similarity=0.583  Sum_probs=33.3

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      +..++|+|||||..|+-+|..|++.|. +|+|+|++++
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~~~g~-~Vtlie~~~~   64 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILDR   64 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             cCCCEEEEECChHHHHHHHHHhhccce-EEEEEEecCc
Confidence            346789999999999999999999999 7999998664

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.75  E-value=4.8e-08  Score=76.46  Aligned_cols=37  Identities=32%  Similarity=0.569  Sum_probs=33.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      ..++|+|||||..|+-+|..|++.|. +|+|+|+++++
T Consensus        21 ~p~~v~IiGgG~ig~E~A~~l~~~G~-~Vtlve~~~~i   57 (117)
T d1ebda2          21 VPKSLVVIGGGYIGIELGTAYANFGT-KVTILEGAGEI   57 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSS
T ss_pred             cCCeEEEECCCccceeeeeeeccccc-EEEEEEeccee
Confidence            34789999999999999999999999 79999997754

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.73  E-value=6.6e-08  Score=75.95  Aligned_cols=36  Identities=25%  Similarity=0.556  Sum_probs=32.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..++|+|||||..|+-+|..|++.|. +|+|+|++++
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~~   64 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGV-HVSLVETQPR   64 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccc-eEEEEeeccc
Confidence            35789999999999999999999999 7999998664

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.73  E-value=1.8e-09  Score=96.17  Aligned_cols=43  Identities=28%  Similarity=0.455  Sum_probs=39.4

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      .++|||+|||||+|||+||.+|++.|. +|+|+|+++.+||.+.
T Consensus         3 ~~~yDviVIG~GpAGl~aA~~aa~~G~-kV~lie~~~~~GG~~~   45 (233)
T d1v59a1           3 NKSHDVVIIGGGPAGYVAAIKAAQLGF-NTACVEKRGKLGGTCL   45 (233)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSSSSHHHH
T ss_pred             CcccCEEEECCCHHHHHHHHHHHHCCC-cEEEEEecCCcceEeE
Confidence            358999999999999999999999999 6999999999998553

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=2.6e-08  Score=80.44  Aligned_cols=41  Identities=17%  Similarity=0.257  Sum_probs=38.9

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecC
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSAS  251 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p  251 (496)
                      .|+++++|+.|++|+.+++++.|++.+|+++.||.||+|+.
T Consensus        96 ~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          96 EGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             TTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred             CCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeec
Confidence            69999999999999999999999999999999999999986

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.71  E-value=1.4e-07  Score=90.97  Aligned_cols=68  Identities=16%  Similarity=0.096  Sum_probs=52.6

Q ss_pred             cccCCcceeeeCcccHHHHHHHHHHhhccCCCCCccccceeeCceeEEEEEc--CCceE-EEeCCCcEEEcCEEEEec
Q 010995          176 VDFGEREFLVADERGYAHLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHS--RNGVT-VKTEDGCVYEANYVILSA  250 (496)
Q Consensus       176 ~~~~~~~~~~~~~~G~~~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~--~~~v~-V~~~~G~~~~ad~VI~A~  250 (496)
                      ..||...++ ++.-|.+.|++++++..-.      .|+...+|++|.+|..+  ++++. |...+|+++.++.||+.-
T Consensus       361 g~yG~spfl-yp~YG~gEipQ~FcR~~AV------~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~p  431 (491)
T d1vg0a1         361 GRYGNTPFL-FPLYGQGELPQCFCRMCAV------FGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIED  431 (491)
T ss_dssp             TSSSSSSEE-EETTCTTHHHHHHHHHHHH------TTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEG
T ss_pred             HhhCCCCeE-eecCCcchHHHHHHHHHHh------cCcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEECH
Confidence            346665555 4556778999999887554      69999999999999874  44565 777889999999998753

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.70  E-value=2.5e-09  Score=102.46  Aligned_cols=41  Identities=29%  Similarity=0.574  Sum_probs=36.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHH------CCCCcEEEEeeCCCCCeEEE
Q 010995            6 RSPVIIIGAGVSGISAGKILAE------NGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~------~G~~~V~vlEa~~~~GGr~~   47 (496)
                      .+||||||||+|||+||+.|++      +|+ +|+|||++..+|..+.
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl-~VlllEK~~~pG~k~~   78 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDL-RVCLVEKAAHIGAHTL   78 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCC-CEEEECSSSSTTTTCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcCCC-EEEEEcCCCCCCCCcc
Confidence            5899999999999999999998      899 6999999998876433

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.69  E-value=3.7e-09  Score=96.98  Aligned_cols=42  Identities=29%  Similarity=0.543  Sum_probs=37.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHH-CCCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAE-NGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~-~G~~~V~vlEa~~~~GGr~~   47 (496)
                      ..+||+|||||++||+||++|++ .|+ +|+|+|+++++||.+.
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~-~V~vlE~~~~~GG~~~   74 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNV-QVAIIEQSVSPGGGAW   74 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTS-CEEEEESSSSCCTTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCC-eEEEEecCCCCCCcee
Confidence            46899999999999999999997 599 6999999999998554

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=2.7e-08  Score=92.38  Aligned_cols=40  Identities=28%  Similarity=0.507  Sum_probs=34.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      +.+||||||||+|||+||..+++.| + |+|||+.+..||.+
T Consensus         6 ~~~DVvVVG~G~AGl~AA~~a~~~g-~-V~llEK~~~~gG~s   45 (305)
T d1chua2           6 HSCDVLIIGSGAAGLSLALRLADQH-Q-VIVLSKGPVTEGST   45 (305)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTTTS-C-EEEECSSCTTC---
T ss_pred             ccCCEEEECccHHHHHHHHHhhcCC-C-EEEEECCCCCCCch
Confidence            4689999999999999999998877 4 99999999888753

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.69  E-value=1.2e-07  Score=74.14  Aligned_cols=40  Identities=10%  Similarity=0.129  Sum_probs=35.7

Q ss_pred             cccceeeCceeEEEEEcC-CceEEEeCCCcEEEcCEEEEec
Q 010995          211 LDNRLKLNKVVRELQHSR-NGVTVKTEDGCVYEANYVILSA  250 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~-~~v~V~~~~G~~~~ad~VI~A~  250 (496)
                      .|+++++|++|++|+..+ +.++|++.+|++++||.||+|+
T Consensus        77 ~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          77 NGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             TTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             cCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence            699999999999999765 4577999999999999999985

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.69  E-value=2.4e-08  Score=95.39  Aligned_cols=33  Identities=30%  Similarity=0.589  Sum_probs=30.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .||||||+|.+|+.+|++|+++|+ +|+|||+..
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~-~VlvLEaG~   35 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGV-QTLMLEMGQ   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcC-eEEEEecCC
Confidence            489999999999999999999999 699999954

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.66  E-value=8.1e-09  Score=91.94  Aligned_cols=42  Identities=33%  Similarity=0.741  Sum_probs=38.5

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      ...++|+|||||+|||+||..|+++|+ +|+|+|+++++||..
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~~~~~GG~~   88 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAEKIGGHL   88 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSTTTTH
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhcc-ceeeEeeccccCCcc
Confidence            356899999999999999999999999 799999999999843

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.64  E-value=1.6e-07  Score=73.34  Aligned_cols=41  Identities=15%  Similarity=0.203  Sum_probs=36.2

Q ss_pred             cccceeeCceeEEEEEcCCc-eEEEeCCCcEEEcCEEEEecC
Q 010995          211 LDNRLKLNKVVRELQHSRNG-VTVKTEDGCVYEANYVILSAS  251 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VI~A~p  251 (496)
                      .|++|++|+.|++|+.++++ ..|.+.+|++++||.||+|+.
T Consensus        75 ~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          75 NGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             TTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             CcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence            69999999999999987655 458899999999999999974

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.64  E-value=7.7e-09  Score=91.93  Aligned_cols=38  Identities=18%  Similarity=0.256  Sum_probs=34.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeCCCCCeE
Q 010995            7 SPVIIIGAGVSGISAGKILAEN--GIEDILILEASDRIGGR   45 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~~~~GGr   45 (496)
                      ++|+|||||+|||+||++|+++  |+ +|+|||+.+++||.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~-~V~v~e~~~~~gG~   41 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRA-HVDIYEKQLVPFGL   41 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSC-EEEEECSSSSSCTH
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCC-eEEEEeCCCCCCce
Confidence            5899999999999999999886  67 79999999999984

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.63  E-value=8.3e-09  Score=91.64  Aligned_cols=41  Identities=29%  Similarity=0.556  Sum_probs=37.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      ..|||+|||||++||+||.+|++.|. +|+|+|+.+.+||.+
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~G~-~V~viE~~~~~GG~~   45 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADEGL-KVAIVERYKTLGGVC   45 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSCSSHHH
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCC-eEEEEeccCCCCCee
Confidence            46899999999999999999999999 699999999999843

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.62  E-value=1.3e-08  Score=90.12  Aligned_cols=39  Identities=31%  Similarity=0.419  Sum_probs=35.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      ++|||+|||||+|||+||.+|+++|. +|+|+|+....||
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~-~V~viE~~~~~~~   40 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGL-KTALIEKYKGKEG   40 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTC-CEEEEECCBCTTS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC-eEEEEecccCCCc
Confidence            68999999999999999999999999 6999999766554

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.59  E-value=3e-07  Score=87.07  Aligned_cols=38  Identities=26%  Similarity=0.431  Sum_probs=34.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHH----CCCCcEEEEeeCCCCCe
Q 010995            6 RSPVIIIGAGVSGISAGKILAE----NGIEDILILEASDRIGG   44 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~----~G~~~V~vlEa~~~~GG   44 (496)
                      .+||+|||||+|||+||..|++    +|. +|+|+|+....||
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~-~V~vieK~~~~gg   62 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGL-KVTLVEKAAVERS   62 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTC-CEEEECSSCTTTC
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcC-EEEEEeCCCCCCC
Confidence            5799999999999999999986    699 6999999887765

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.59  E-value=2.5e-07  Score=72.73  Aligned_cols=36  Identities=25%  Similarity=0.538  Sum_probs=32.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      .++++|||||..|+-+|..|++.|. +|+|+|+++++
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~-~Vtii~~~~~~   58 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEFQPQI   58 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCc-ceeEEEecccc
Confidence            4689999999999999999999999 79999987643

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.56  E-value=1.4e-08  Score=89.38  Aligned_cols=40  Identities=30%  Similarity=0.439  Sum_probs=35.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      ++|||+|||||.+|++||..|++.|. +|+|+|++ .+||.+
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~-kV~iiE~~-~~GGtc   40 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQ-KCALIEAK-ELGGTC   40 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTC-CEEEEESS-CTTHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC-EEEEEecc-CcCCeE
Confidence            46899999999999999999999999 69999985 688843

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.49  E-value=1.6e-08  Score=94.15  Aligned_cols=42  Identities=43%  Similarity=0.634  Sum_probs=37.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHC--CCCcEEEEeeCCCCCeEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAEN--GIEDILILEASDRIGGRVR   47 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~--G~~~V~vlEa~~~~GGr~~   47 (496)
                      ..+||+|||||++||+||++|+++  |+ +|+|+|+++.+||.+.
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~   92 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDL-KVCIIESSVAPGGGSW   92 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTS-CEEEECSSSSCCTTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCC-eEEEEEcCCCCcceeE
Confidence            467999999999999999999975  99 6999999999999654

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.48  E-value=3.7e-07  Score=71.81  Aligned_cols=36  Identities=22%  Similarity=0.511  Sum_probs=32.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..++++|||||..||-.|..|++.|. +|||+|++++
T Consensus        24 ~p~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~~~~   59 (123)
T d1dxla2          24 IPKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEFASE   59 (123)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTC-EEEEECSSSS
T ss_pred             cCCeEEEEccchHHHHHHHHHHhcCC-eEEEEEEccc
Confidence            35689999999999999999999999 7999998664

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.47  E-value=4.5e-07  Score=71.39  Aligned_cols=35  Identities=26%  Similarity=0.540  Sum_probs=32.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..+++|||||..|+-.|..|++.|. +|+|+|++++
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~~~~   60 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEMMDG   60 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCC-EEEEEEeecc
Confidence            4689999999999999999999999 7999998654

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.44  E-value=5.1e-08  Score=93.16  Aligned_cols=38  Identities=18%  Similarity=0.378  Sum_probs=34.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIG   43 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~G   43 (496)
                      ..+||||||||++|+++|++|+++|+ +|+|||+....+
T Consensus         3 ~~yDviIVGsG~aG~v~A~~La~~G~-kVlvLEaG~~~~   40 (379)
T d2f5va1           3 IKYDVVIVGSGPIGCTYARELVGAGY-KVAMFDIGEIDS   40 (379)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCCS
T ss_pred             CcccEEEECcCHHHHHHHHHHhhCCC-eEEEEecCCCCC
Confidence            47999999999999999999999999 699999965443

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.42  E-value=1.1e-06  Score=68.82  Aligned_cols=36  Identities=17%  Similarity=0.397  Sum_probs=32.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      ..++|+|||||..|+-.|..|++.|. +|+++|++++
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l~~~g~-~vt~i~~~~~   56 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFFNATGR-RTVMLVRTEP   56 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcch-hheEeeccch
Confidence            35789999999999999999999999 7999998653

>d2ivda2 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.41  E-value=8.7e-07  Score=67.49  Aligned_cols=99  Identities=17%  Similarity=0.171  Sum_probs=73.5

Q ss_pred             CcceeEEEEEcCCCCCCCCCCCceEEeecCCCC-cccccee--ccccC-CCCcEEEEEeccccchhcccCCcHHHHHHHH
Q 010995          279 VMVYTKIFLKFPCKFWPCSPGKEFFIYAHERRG-YYTFWQH--MENAY-PGSNILVVTLTNGESKRVEAQPDEETLKEAM  354 (496)
Q Consensus       279 ~~~~~~v~l~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~-~~~~vl~~~~~~~~a~~~~~~~~ee~~~~~~  354 (496)
                      |.++..|++.|++...+...++++++...+... ...+|.+  +.... ++..++.+++.+.....+..++|+++++.++
T Consensus         2 Ya~vavV~l~~~~~~~~~~~GfG~LVP~~e~~~~lg~~f~S~~fp~r~p~~~~llrv~~Gg~~~~~~~~~~d~~l~~~a~   81 (108)
T d2ivda2           2 YAPIAVVHLGFDAGTLPAPDGFGFLVPAEEQRRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQPGLVEQDEDALAALAR   81 (108)
T ss_dssp             BCCEEEEEEEECTTSSCCCCSSEEECCGGGCCSCCEEEEHHHHCGGGBSTTCEEEEEEEECTTCGGGGGSCHHHHHHHHH
T ss_pred             CCCEEEEEEEEcHHHCCCCCceEEEccCCCCCeEEEEEEEccccccccCCCCEEEEEEeCCCCCcccccCCHHHHHHHHH
Confidence            677888999999877654457888887665433 3344553  23333 4455566777776666778899999999999


Q ss_pred             HHHHHhcCCCCCCCCeeEecccCC
Q 010995          355 EVLQDMFGPDIPNATDILVPRWWN  378 (496)
Q Consensus       355 ~~L~~~~~~~~~~~~~~~~~rw~~  378 (496)
                      ++|++++|.+ .+|....++||.+
T Consensus        82 ~dL~~~lgi~-~~P~~~~v~rw~~  104 (108)
T d2ivda2          82 EELKALAGVT-ARPSFTRVFRWPL  104 (108)
T ss_dssp             HHHHHHHCCC-SCCSEEEEEEESS
T ss_pred             HHHHHHhCCC-CCCcEEEeeECCC
Confidence            9999999975 5799999999976

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.38  E-value=9.8e-08  Score=86.30  Aligned_cols=42  Identities=26%  Similarity=0.354  Sum_probs=38.8

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      ++.+||||||||.+|+.||..|++.|. +|+|+|+.+.+||.|
T Consensus        40 ~k~yDvvVIGgG~aG~~aA~~~a~~G~-kv~vve~~~~lGG~c   81 (261)
T d1mo9a1          40 PREYDAIFIGGGAAGRFGSAYLRAMGG-RQLIVDRWPFLGGSC   81 (261)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSSSSCHH
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCcccccc
Confidence            457899999999999999999999999 699999999999854

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=4.7e-08  Score=91.76  Aligned_cols=40  Identities=20%  Similarity=0.302  Sum_probs=36.9

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      .+.+||+|||||+|||+||..++++|. +|+|+|+.+..||
T Consensus         5 ~~~~DVlVVG~G~AGl~AAl~aa~~G~-~V~lleK~~~~gg   44 (330)
T d1neka2           5 VREFDAVVIGAGGAGMRAALQISQSGQ-TCALLSKVFPTRS   44 (330)
T ss_dssp             EEEESCEEECCSHHHHHHHHHHHHTTC-CCEEECSSCGGGS
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHcCC-eEEEEeCCCCCCC
Confidence            457899999999999999999999999 6999999988776

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=5.8e-08  Score=82.75  Aligned_cols=37  Identities=32%  Similarity=0.565  Sum_probs=33.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR   45 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr   45 (496)
                      .+||+|||||.+||+||.++++.|. +|+|+|+  ++||+
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G~-~v~iie~--~~gg~   37 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKGI-RTGLMGE--RFGGQ   37 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTC-CEEEECS--STTGG
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCC-eEEEEEE--ecCCc
Confidence            3799999999999999999999999 6999996  35664

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=3.4e-08  Score=84.81  Aligned_cols=38  Identities=21%  Similarity=0.456  Sum_probs=34.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIG   43 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~G   43 (496)
                      +++||+|||||.+||+||.+|++.|. +|+|+|+.++.|
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~-~v~iie~~~~~g   41 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANL-QPVLITGMEKGG   41 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTC-CCEEECCSSTTG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEEeecccc
Confidence            56799999999999999999999999 699999876544

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.36  E-value=9.2e-08  Score=84.98  Aligned_cols=37  Identities=27%  Similarity=0.399  Sum_probs=33.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIG   43 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~G   43 (496)
                      .|||+|||||++||+||.++++.|. +|+|+|+.+..|
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~-kV~viE~~~~~~   39 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDK-KVMVLDFVTPTP   39 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCC-CEEEECCCCCCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCCCC
Confidence            6899999999999999999999999 699999977644

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.36  E-value=1.2e-07  Score=90.53  Aligned_cols=39  Identities=31%  Similarity=0.539  Sum_probs=35.3

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      |+...++||||||+|.+|+.+|++|+++|+ +|+|||+..
T Consensus         2 ~~~~~~~dvIVVGsG~aG~v~A~rLaeaG~-~VlvLEaG~   40 (370)
T d3coxa1           2 LADGDRVPALVIGSGYGGAVAALRLTQAGI-PTQIVEMGR   40 (370)
T ss_dssp             CCTTCEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSC
T ss_pred             CCCCCCCCEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            556678999999999999999999999999 699999953

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.3e-07  Score=83.05  Aligned_cols=38  Identities=26%  Similarity=0.585  Sum_probs=34.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCe
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGG   44 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GG   44 (496)
                      .+|||||||||++||+||.++++.|. +|+|+|+ +.+||
T Consensus         2 ~~yDviIIG~GpaG~~aA~~aar~G~-kV~vIEk-~~~GG   39 (221)
T d3grsa1           2 ASYDYLVIGGGSGGLASARRAAELGA-RAAVVES-HKLGG   39 (221)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTC-CEEEEES-SCTTH
T ss_pred             CccCEEEECCCHHHHHHHHHHHHCCC-EEEEEec-cCCCC
Confidence            36999999999999999999999999 6999998 45665

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.36  E-value=7.9e-08  Score=86.82  Aligned_cols=38  Identities=29%  Similarity=0.618  Sum_probs=34.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      |||+|||||.+|++||.++++.|. +|+|+|+ +.+||.|
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~-~V~liE~-~~~GGtc   39 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNA-KVALVEK-SRLGGTC   39 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEEES-SSTTHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCC-eEEEEec-CCCCCeE
Confidence            799999999999999999999999 6999998 4588854

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.33  E-value=2.1e-07  Score=82.62  Aligned_cols=35  Identities=20%  Similarity=0.298  Sum_probs=31.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ++|||+|||||+|||+||.++++.|.+.|+|+|+.
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~   36 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQ   36 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESC
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEee
Confidence            68999999999999999999999987569999975

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.32  E-value=1.5e-07  Score=82.65  Aligned_cols=40  Identities=28%  Similarity=0.523  Sum_probs=35.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRV   46 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~   46 (496)
                      ..+||+|||||++||+||..+++.|. +|+|+|+. .+||.|
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~-~V~liE~~-~~GG~c   43 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQ-ALGGTC   43 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTC-CEEEECSS-CTTHHH
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC-cEEEEecC-CCCCcc
Confidence            46899999999999999999999999 69999985 577743

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.29  E-value=2.4e-07  Score=81.37  Aligned_cols=38  Identities=29%  Similarity=0.531  Sum_probs=34.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeE
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGR   45 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr   45 (496)
                      .+||+|||||.+||+||.++++.|. +|+|+|+.. +||.
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~-kV~vIEk~~-~GG~   40 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKGN-LGGV   40 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSC-TTHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC-EEEEEecCC-CCcc
Confidence            6899999999999999999999999 699999854 5663

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.27  E-value=1.9e-07  Score=88.32  Aligned_cols=63  Identities=24%  Similarity=0.348  Sum_probs=46.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHH-----HCCCCcEEEEeeCCCCCeEEEeeeeCCcEEeecceEEecCCCCCCChHHHHHH
Q 010995            5 SRSPVIIIGAGVSGISAGKILA-----ENGIEDILILEASDRIGGRVRNEKFGGVSVELGAGWIAGVGGKESNPVWELAS   79 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~-----~~G~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~l~~   79 (496)
                      ..|||+|||||++||++|..|+     ++|+ +|+|||+++.+.-       .+     .+..+       .++..++++
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~-~v~vlEr~~~~~~-------~~-----r~~~l-------~~~~~~~L~   65 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDL-KVRIIDKRSTKVY-------NG-----QADGL-------QCRTLESLK   65 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTC-CEEEECSSSSCCC-------SC-----SCCEE-------CHHHHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCC-cEEEEcCCCCCCc-------CC-----eEEEE-------CHHHHHHHH
Confidence            3589999999999999999997     4799 6999999875421       00     01112       345778999


Q ss_pred             hcCCcccc
Q 010995           80 KSGLRTCF   87 (496)
Q Consensus        80 ~lgl~~~~   87 (496)
                      ++|+....
T Consensus        66 ~lGl~~~i   73 (360)
T d1pn0a1          66 NLGLADKI   73 (360)
T ss_dssp             TTTCHHHH
T ss_pred             HcCChHHH
Confidence            99997554

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=3.7e-07  Score=79.55  Aligned_cols=40  Identities=20%  Similarity=0.144  Sum_probs=35.0

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecCh
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASI  252 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~  252 (496)
                      .|++++++++|++|+.+++  +|++.+|+++.||.||+|+..
T Consensus        96 ~gI~~~~g~~V~~id~~~~--~V~l~dG~~i~~d~lViAtG~  135 (213)
T d1m6ia1          96 GGVAVLTGKKVVQLDVRDN--MVKLNDGSQITYEKCLIATGG  135 (213)
T ss_dssp             CEEEEEETCCEEEEEGGGT--EEEETTSCEEEEEEEEECCCE
T ss_pred             CCeEEEeCCEEEEeeccCc--eeeeccceeeccceEEEeeee
Confidence            6899999999999987766  567789999999999999874

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.23  E-value=1.7e-07  Score=80.37  Aligned_cols=36  Identities=19%  Similarity=0.272  Sum_probs=32.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      .++||+|||||.+||+||.+|++.|. +|+|+|+...
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~-~v~vie~~~~   39 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAEL-KPLLFEGWMA   39 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC-CCEEECCSSB
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCC-cEEEEEeecc
Confidence            46899999999999999999999999 6999997654

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.20  E-value=3.5e-07  Score=81.41  Aligned_cols=38  Identities=21%  Similarity=0.353  Sum_probs=33.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      +.|||||||||+||++||.++++.|.+.|.|+|+....
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~   39 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHH   39 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccC
Confidence            68999999999999999999999986469999987653

>d1seza2 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.06  E-value=2.5e-06  Score=65.26  Aligned_cols=100  Identities=11%  Similarity=0.179  Sum_probs=71.9

Q ss_pred             CCcceeEEEEEcCCCCCCC-CCCCceEEeecCCC----Ccccccee--ccccCC-CCcEEEEEeccccchhcccCCcHHH
Q 010995          278 DVMVYTKIFLKFPCKFWPC-SPGKEFFIYAHERR----GYYTFWQH--MENAYP-GSNILVVTLTNGESKRVEAQPDEET  349 (496)
Q Consensus       278 ~~~~~~~v~l~~~~~~w~~-~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~-~~~vl~~~~~~~~a~~~~~~~~ee~  349 (496)
                      +|.++..|.+.|+++-+.. ..+++++++..++.    ....+|.+  +....| +..++.+++.+....++..++|+++
T Consensus         1 ~Ya~va~V~l~~~~~~~~~~~~GfG~LVP~~e~~~g~~~lg~~f~S~~fp~r~p~~~~ll~~~~Gg~~~~~~~~~~d~~l   80 (112)
T d1seza2           1 DYVPLSVVITTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFSSMMFPDRAPNNVYLYTTFVGGSRNRELAKASRTEL   80 (112)
T ss_dssp             CEEEEEEEEEEEEGGGBSSCCCSSEEECCGGGGGGTCCSSEEEEHHHHCGGGSCTTEEEEEEEEESTTCGGGTTCCHHHH
T ss_pred             CCCcEEEEEEEEchHHcCCCCCceEEEeCCcccCCCceEEEEEEecccCCCcCCCCcEEEEEEECCCCCcccccCCHHHH
Confidence            3677888999998876654 34678888765422    22334543  333334 4455666666666667888999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCCeeEecccCC
Q 010995          350 LKEAMEVLQDMFGPDIPNATDILVPRWWN  378 (496)
Q Consensus       350 ~~~~~~~L~~~~~~~~~~~~~~~~~rw~~  378 (496)
                      ++.++++|++++|.. .+|....++||.+
T Consensus        81 ~~~a~~dl~~~lgi~-~~P~~~~v~rw~~  108 (112)
T d1seza2          81 KEIVTSDLKQLLGAE-GEPTYVNHLYWSK  108 (112)
T ss_dssp             HHHHHHHHHHHHCBC-SCCSSEEEEEEEE
T ss_pred             HHHHHHHHHHHhCCC-CCccEEEEEECCc
Confidence            999999999999875 5789999999965

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.04  E-value=1.8e-07  Score=83.39  Aligned_cols=31  Identities=32%  Similarity=0.414  Sum_probs=28.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +|+|||||++||++|++|+++|+ +|+|+|+.
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~-~v~v~e~~   32 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYH-SVLQPLDV   32 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHT-TTSSSCEE
T ss_pred             EEEEECchHHHHHHHHHHHHCCC-CceEEeee
Confidence            59999999999999999999999 68888874

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.99  E-value=1.8e-06  Score=81.65  Aligned_cols=34  Identities=41%  Similarity=0.602  Sum_probs=31.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .||+||||||.+|+..|.+|+++|. +|+||||..
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~-~VlvLEaG~   35 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGG   35 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCC-eEEEEEccC
Confidence            6899999999999999999999999 699999963

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.92  E-value=2.7e-06  Score=75.11  Aligned_cols=38  Identities=29%  Similarity=0.617  Sum_probs=32.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCC--cEEEEeeCCCCCeE
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIE--DILILEASDRIGGR   45 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~--~V~vlEa~~~~GGr   45 (496)
                      .+|+|||||++|++||.++++.|.+  +|+|+|+ +.+||.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk-~~~GG~   41 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGGA   41 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEES-SCTTHH
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEec-CCCCce
Confidence            5799999999999999999887642  6999997 567874

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.89  E-value=5.3e-06  Score=64.12  Aligned_cols=36  Identities=25%  Similarity=0.553  Sum_probs=33.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      .++++|||||..|+-+|..|++.|. +|+|+|+.+++
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~~~~i   56 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGA-QVSVVEARERI   56 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhccc-ceEEEeeeccc
Confidence            4789999999999999999999999 79999998765

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.84  E-value=4e-06  Score=80.11  Aligned_cols=36  Identities=31%  Similarity=0.506  Sum_probs=32.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC-CCcEEEEeeCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENG-IEDILILEASDR   41 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G-~~~V~vlEa~~~   41 (496)
                      +.+|+||||||.||+..|.+|+++| . +|+||||...
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~-~VLlLEaG~~   59 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKI-KVLVIEKGFY   59 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTC-CEEEEESSCC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCC-eEEEEcCCCC
Confidence            3599999999999999999999998 7 6999999753

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.83  E-value=6.9e-06  Score=64.21  Aligned_cols=35  Identities=29%  Similarity=0.485  Sum_probs=32.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      ++|+|||||.+|+-+|..|++.|. +|+|+|+++++
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~~l   67 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRGAMF   67 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTC-EEEEECSSSCC
T ss_pred             CcEEEECCcHHHHHHHHHhhcccc-eEEEEeccccc
Confidence            679999999999999999999999 79999987643

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=1.5e-05  Score=58.85  Aligned_cols=36  Identities=22%  Similarity=0.467  Sum_probs=32.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      +.++|+|||.|.+|+++|..|+++|. +|+++|.+..
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~~~   39 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRMT   39 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESSSS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCCcC
Confidence            56789999999999999999999999 6999998654

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.77  E-value=5.1e-06  Score=79.21  Aligned_cols=34  Identities=32%  Similarity=0.627  Sum_probs=31.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCC-CCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENG-IEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G-~~~V~vlEa~~   40 (496)
                      .+|+||||||.+|+..|.+|++++ + +|+||||..
T Consensus        17 tyD~IIVGsG~aG~vlA~rLse~~~~-~VLvLEaG~   51 (385)
T d1cf3a1          17 TVDYIIAGGGLTGLTTAARLTENPNI-SVLVIESGS   51 (385)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTC-CEEEEESSC
T ss_pred             eEEEEEECcCHHHHHHHHHHHHCCCC-eEEEECCCC
Confidence            489999999999999999999986 7 699999964

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=1.2e-05  Score=63.11  Aligned_cols=36  Identities=22%  Similarity=0.411  Sum_probs=33.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      .++|+|||||..|+-+|..|++.|. +|+|+|+++++
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~~~~~   57 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGS-KTSLMIRHDKV   57 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCc-EEEEEeecccc
Confidence            4689999999999999999999999 79999998764

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.74  E-value=9.7e-06  Score=68.10  Aligned_cols=36  Identities=19%  Similarity=0.458  Sum_probs=31.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCC-cEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIE-DILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~-~V~vlEa~~~   41 (496)
                      .++|||||||.+|+.+|..|++.|.+ +|+|+|+++.
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            46899999999999999999998842 6999998763

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.64  E-value=6.1e-06  Score=77.53  Aligned_cols=34  Identities=29%  Similarity=0.507  Sum_probs=30.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      .+|+||||||.||+..|.+|+++ + +|+||||.+.
T Consensus        26 ~YD~IIVGsG~aG~vlA~rLae~-~-kVLvLEaG~~   59 (351)
T d1ju2a1          26 SYDYVIVGGGTSGCPLAATLSEK-Y-KVLVLERGSL   59 (351)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTTT-S-CEEEECSSBC
T ss_pred             CccEEEECccHHHHHHHHHhcCC-C-CEEEEecCCC
Confidence            47999999999999999999987 8 6999999753

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.51  E-value=5.9e-05  Score=58.60  Aligned_cols=34  Identities=21%  Similarity=0.432  Sum_probs=31.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ...+++|||||..|+-.|..|++.|. +|+|++++
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~   52 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGL-DVTVMVRS   52 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCC-eEEEEEec
Confidence            34689999999999999999999999 69999964

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.42  E-value=5.7e-05  Score=63.37  Aligned_cols=37  Identities=24%  Similarity=0.373  Sum_probs=32.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      .+.+|+|||||.+|+-+|..|++.|. +|+|++..++.
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~-~v~v~~~~~~~   38 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDAT   38 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCC-ceEEEEecCcc
Confidence            46789999999999999999999999 69999987643

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.31  E-value=7.2e-05  Score=62.49  Aligned_cols=34  Identities=18%  Similarity=0.382  Sum_probs=31.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .++|+|||||..|..+|.+|+++|+ +|+|++++.
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~~   35 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTL   35 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCh
Confidence            5789999999999999999999999 799999864

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.23  E-value=8.8e-05  Score=62.20  Aligned_cols=41  Identities=15%  Similarity=0.188  Sum_probs=33.9

Q ss_pred             cccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecChH
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASIG  253 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~~  253 (496)
                      .+++++++++|++|..+..  .+.+.+|+++.+|.||+|+...
T Consensus        68 ~~i~~~~~~~v~~i~~~~~--~~~~~~g~~~~~D~vi~a~G~~  108 (183)
T d1d7ya1          68 PEVEWLLGVTAQSFDPQAH--TVALSDGRTLPYGTLVLATGAA  108 (183)
T ss_dssp             TTCEEEETCCEEEEETTTT--EEEETTSCEEECSEEEECCCEE
T ss_pred             CCeEEEEeccccccccccc--eeEecCCcEeeeeeEEEEEEEE
Confidence            5778999999999887655  4567889999999999998643

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.20  E-value=0.0001  Score=60.63  Aligned_cols=33  Identities=21%  Similarity=0.461  Sum_probs=28.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      +|+|||||.+|+.+|..|++ +. +|+|+|+++++
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~-~Vtvv~~~~~~   34 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TY-EVTVIDKEPVP   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TS-EEEEECSSSSC
T ss_pred             eEEEECCcHHHHHHHHHHHc-CC-CEEEEeccccc
Confidence            69999999999999999975 67 79999986643

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.17  E-value=0.00014  Score=61.70  Aligned_cols=42  Identities=24%  Similarity=0.225  Sum_probs=34.5

Q ss_pred             cccceeeCceeEEEEEcCCceEEEe-CCC--cEEEcCEEEEecCh
Q 010995          211 LDNRLKLNKVVRELQHSRNGVTVKT-EDG--CVYEANYVILSASI  252 (496)
Q Consensus       211 ~g~~i~~~~~V~~I~~~~~~v~V~~-~~G--~~~~ad~VI~A~p~  252 (496)
                      .|++++++++|++|+.+++.+++.. .+|  .++.+|.+|+|+..
T Consensus        69 ~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~  113 (198)
T d1nhpa1          69 RGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGA  113 (198)
T ss_dssp             TTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred             CCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecc
Confidence            5889999999999999888888763 444  35789999999875

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.12  E-value=0.00018  Score=60.16  Aligned_cols=34  Identities=21%  Similarity=0.336  Sum_probs=31.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      +++|+|||||..|++.|..|+++|+ +|+++++++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~   34 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDA   34 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            3679999999999999999999999 799999853

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.76  E-value=0.00072  Score=54.48  Aligned_cols=34  Identities=29%  Similarity=0.543  Sum_probs=31.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +..+|+|||||.+|+.|+......|. +|+++|.+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~   64 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDIN   64 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCc
Confidence            46799999999999999999999999 79999964

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.0013  Score=53.65  Aligned_cols=39  Identities=15%  Similarity=0.126  Sum_probs=34.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCCCeEEE
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEASDRIGGRVR   47 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~GGr~~   47 (496)
                      +|+|||+|-.|...|..|+++|+ +|+++.+++...-+..
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~   40 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVN   40 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEE
T ss_pred             EEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhhhc
Confidence            59999999999999999999999 7999999887554443

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.72  E-value=0.00094  Score=54.00  Aligned_cols=37  Identities=19%  Similarity=0.215  Sum_probs=31.5

Q ss_pred             CCCEEEE--CCCHHHHHHHHHHHHCCCCcEEEEeeCCCCC
Q 010995            6 RSPVIII--GAGVSGISAGKILAENGIEDILILEASDRIG   43 (496)
Q Consensus         6 ~~dVvII--GaGiaGL~aA~~L~~~G~~~V~vlEa~~~~G   43 (496)
                      ...|+||  |||..|+.+|-.|+++|. +|+|+|+.++++
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~-~Vtlv~~~~~~~   77 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGVHLAN   77 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESSCTTT
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCC-eEEEEecCCccc
Confidence            3456665  999999999999999999 799999987654

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.66  E-value=0.00083  Score=54.05  Aligned_cols=35  Identities=20%  Similarity=0.398  Sum_probs=31.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+|+|||||-+|+=||..|.+.|.+.|+++++++
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            45799999999999999999999976688998755

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.53  E-value=0.0012  Score=53.89  Aligned_cols=35  Identities=20%  Similarity=0.374  Sum_probs=31.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      +..+|+|||||.+|+.||......|. +|+++|.+.
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~   62 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRA   62 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCS
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccH
Confidence            45789999999999999999999999 799999643

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.0011  Score=55.54  Aligned_cols=34  Identities=21%  Similarity=0.528  Sum_probs=31.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      -++|+|||||..|-+-|+.++++|+ +|+++|.++
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~   37 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTE   37 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCCC-cEEEEECCh
Confidence            4689999999999999999999999 799999753

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.38  E-value=0.0016  Score=54.24  Aligned_cols=34  Identities=24%  Similarity=0.363  Sum_probs=31.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +-++|+|||||..|..-|..++.+|+ +|+++|.+
T Consensus         3 ~I~~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~   36 (186)
T d1wdka3           3 DVKQAAVLGAGIMGGGIAYQSASKGT-PILMKDIN   36 (186)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            35689999999999999999999999 69999974

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.01  E-value=0.003  Score=49.33  Aligned_cols=33  Identities=27%  Similarity=0.368  Sum_probs=30.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ++++|||+|-.|...|..|.+.|+ +|+++|.++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINE   33 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CCEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEecCcH
Confidence            479999999999999999999999 699999864

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.92  E-value=0.0033  Score=50.05  Aligned_cols=39  Identities=33%  Similarity=0.583  Sum_probs=34.0

Q ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCC-cEEEEeeC
Q 010995            1 MDSTSRSPVIIIGAGVSGISAGKILAENGIE-DILILEAS   39 (496)
Q Consensus         1 m~~~~~~dVvIIGaGiaGL~aA~~L~~~G~~-~V~vlEa~   39 (496)
                      |.+....+|.|||||-.|.++|+.|+.+|+- +++|+|..
T Consensus         1 m~~~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~   40 (148)
T d1ldna1           1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (148)
T ss_dssp             CTTTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCCCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeec
Confidence            7777888999999999999999999998863 59999864

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=95.82  E-value=0.0051  Score=49.17  Aligned_cols=36  Identities=28%  Similarity=0.426  Sum_probs=32.4

Q ss_pred             CCCCCEEEEC-CCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            4 TSRSPVIIIG-AGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         4 ~~~~dVvIIG-aGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      +..++|.||| .|..|.+-|..|.++|+ +|+++++..
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~~   43 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGY-PISILDRED   43 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTC
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCC-CcEeccccc
Confidence            4678999999 69999999999999999 799998754

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.76  E-value=0.0045  Score=48.22  Aligned_cols=32  Identities=34%  Similarity=0.601  Sum_probs=30.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      +|+|+|+|--|...|..|.++|+ +|+|+|+++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-CcceecCCh
Confidence            59999999999999999999999 799999864

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.75  E-value=0.0053  Score=49.12  Aligned_cols=37  Identities=24%  Similarity=0.474  Sum_probs=32.3

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .++++|+|||+|-.|.++|+.|+..++.+++|++.++
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            3678999999999999999999999976799998643

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.52  E-value=0.0028  Score=52.79  Aligned_cols=34  Identities=12%  Similarity=0.327  Sum_probs=30.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      .+.+|+|||||--|.+.|..|++.|. +|+++.++
T Consensus         6 ~m~KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~   39 (189)
T d1n1ea2           6 YLNKAVVFGSGAFGTALAMVLSKKCR-EVCVWHMN   39 (189)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTEE-EEEEECSC
T ss_pred             eeceEEEECCCHHHHHHHHHHHHcCC-eEEEEEec
Confidence            45689999999999999999999999 79999753

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.48  E-value=0.0045  Score=52.21  Aligned_cols=31  Identities=23%  Similarity=0.427  Sum_probs=28.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +|.|||.|-.||..|..|+++|+ +|+.+|.+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n   32 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVS   32 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSC
T ss_pred             EEEEECCCHhHHHHHHHHHhCCC-cEEEEeCC
Confidence            49999999999999999999999 79999964

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=95.30  E-value=0.0078  Score=47.59  Aligned_cols=37  Identities=27%  Similarity=0.561  Sum_probs=31.8

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCC-CcEEEEeeCC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGI-EDILILEASD   40 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~-~~V~vlEa~~   40 (496)
                      +++.+|+|||+|-.|.++|+.|+.+|. .+|+++|..+
T Consensus         3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            457799999999999999999999984 2699999643

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.28  E-value=0.0058  Score=48.75  Aligned_cols=33  Identities=18%  Similarity=0.390  Sum_probs=30.4

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEe
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILE   37 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlE   37 (496)
                      .+.++|+|||||-.|+.-|..|.+.|. +|+|+-
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVva   43 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVS   43 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEe
Confidence            467899999999999999999999999 799993

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.12  E-value=0.0094  Score=44.33  Aligned_cols=35  Identities=11%  Similarity=0.094  Sum_probs=29.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..++|+|||+|.||+-.|..|++.+. +|+++-+++
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~ak-~v~~~~~r~   65 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPVAK-HPIYQSLLG   65 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSC-SSEEEECTT
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHhcC-EEEEEEecC
Confidence            46899999999999999999999887 577776544

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=95.08  E-value=0.012  Score=47.85  Aligned_cols=35  Identities=20%  Similarity=0.325  Sum_probs=31.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.++|+|||+|=++-++++.|.+.|.++|+|+-|+
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~   50 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN   50 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeccc
Confidence            56789999999999999999999998679998764

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=95.04  E-value=0.011  Score=46.59  Aligned_cols=35  Identities=34%  Similarity=0.607  Sum_probs=30.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      +++|.|||+|-.|.++|+.|+.++..++.+++..+
T Consensus         1 r~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           1 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            35899999999999999999999876799998643

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.03  E-value=0.006  Score=46.14  Aligned_cols=51  Identities=22%  Similarity=0.270  Sum_probs=34.9

Q ss_pred             HHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCC--cEEEcCEEEEecC
Q 010995          193 HLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDG--CVYEANYVILSAS  251 (496)
Q Consensus       193 ~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G--~~~~ad~VI~A~p  251 (496)
                      .+.+.+.+.+.+      .|++++++++|++++  ++...+...++  ++++||.||+|+.
T Consensus        63 ~~~~~l~~~l~~------~gV~i~~~~~V~~i~--~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          63 ELTAPVAESLKK------LGIALHLGHSVEGYE--NGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             HHHHHHHHHHHH------HTCEEETTCEEEEEE--TTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             hhHHHHHHHHHh------hcceEEcCcEEEEEc--CCeEEEEEcCCCeEEEEcCEEEEecC
Confidence            344555555555      699999999999986  33333333333  5799999999974

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.99  E-value=0.011  Score=44.37  Aligned_cols=34  Identities=18%  Similarity=0.317  Sum_probs=30.8

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEee
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEA   38 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa   38 (496)
                      .+.++|+|||+|-.|..-|..|.+.|. +|+|+..
T Consensus        10 l~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~   43 (113)
T d1pjqa1          10 LRDRDCLIVGGGDVAERKARLLLEAGA-RLTVNAL   43 (113)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEES
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEec
Confidence            457899999999999999999999999 7999854

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.023  Score=43.42  Aligned_cols=52  Identities=13%  Similarity=0.220  Sum_probs=37.9

Q ss_pred             HHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEe---CCC------cEEEcCEEEEecC
Q 010995          194 LLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKT---EDG------CVYEANYVILSAS  251 (496)
Q Consensus       194 l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~---~~G------~~~~ad~VI~A~p  251 (496)
                      +.+.+.+.+++      .|+++++|++|++|+.+++++.+..   ..|      ...++|.||+|+.
T Consensus        65 ~~~~~~~~l~~------~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          65 ISTNCTEELEN------AGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             HHHHHHHHHHH------TTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             HHHHHHHHHHH------CCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            44555555554      7999999999999999888765432   333      2468999999974

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=94.95  E-value=0.01  Score=47.98  Aligned_cols=31  Identities=19%  Similarity=0.292  Sum_probs=28.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +|.|||.|..|.+-|..|+++|+ +|++++++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~   32 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQ   32 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECC
Confidence            49999999999999999999999 79999874

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=94.51  E-value=0.016  Score=44.45  Aligned_cols=36  Identities=17%  Similarity=0.359  Sum_probs=32.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      +.++|+|||+|-+.+-.|..|++... +|+++-+++.
T Consensus        26 ~~k~V~VvGgGdsA~e~A~~L~~~a~-~V~li~r~~~   61 (126)
T d1trba2          26 RNQKVAVIGGGNTAVEEALYLSNIAS-EVHLIHRRDG   61 (126)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSS-EEEEECSSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcCC-cEEEEeeccc
Confidence            46799999999999999999999988 7999987653

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=94.49  E-value=0.021  Score=46.41  Aligned_cols=35  Identities=17%  Similarity=0.161  Sum_probs=31.6

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      .+.++|+|+|||-++-++++.|.+.|. +|+|+.|+
T Consensus        16 ~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~nRt   50 (170)
T d1nyta1          16 RPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRT   50 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCCCEEEEECCcHHHHHHHHHhcccce-EEEeccch
Confidence            356889999999999999999999999 69999874

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=94.48  E-value=0.017  Score=44.28  Aligned_cols=36  Identities=31%  Similarity=0.339  Sum_probs=31.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      +.++|+|||+|-+.+-.|..|++... +|+|+-+++.
T Consensus        29 ~gk~V~VvGgG~sA~~~A~~L~~~a~-~V~li~r~~~   64 (126)
T d1fl2a2          29 KGKRVAVIGGGNSGVEAAIDLAGIVE-HVTLLEFAPE   64 (126)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHTTBS-EEEEECSSSS
T ss_pred             CCceEEEEeCCHHHHHHHHhhhccCC-ceEEEecccc
Confidence            36789999999999999999999877 7999987653

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.42  E-value=0.014  Score=48.02  Aligned_cols=30  Identities=33%  Similarity=0.468  Sum_probs=27.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEee
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEA   38 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa   38 (496)
                      +|+|||||--|.+.|..|+++|. +|+++-+
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~-~V~l~~r   31 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGT   31 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC-EEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-EEEEEEe
Confidence            69999999999999999999999 7999854

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.30  E-value=0.017  Score=46.48  Aligned_cols=33  Identities=18%  Similarity=0.288  Sum_probs=30.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.+|.|||-|..|..-|.+|.++|+ +|.+++++
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~   33 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLV   33 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCCC-eEEEEECc
Confidence            3469999999999999999999999 79999874

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.23  E-value=0.029  Score=44.33  Aligned_cols=35  Identities=11%  Similarity=0.542  Sum_probs=31.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      +.+|.|||+|-.|-++|+.|...+..+++|++..+
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            56899999999999999999999987899998643

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=94.06  E-value=0.031  Score=45.91  Aligned_cols=37  Identities=22%  Similarity=0.432  Sum_probs=32.9

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .+.++|+|||+|-+|-++++.|.+.|.++++|+.++.
T Consensus        16 l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~   52 (182)
T d1vi2a1          16 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD   52 (182)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccch
Confidence            3567899999999999999999999987899998764

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.98  E-value=0.024  Score=43.63  Aligned_cols=37  Identities=24%  Similarity=0.530  Sum_probs=33.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASDRI   42 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~~   42 (496)
                      +.++|+|||+|-+.+-.|.+|++.-. +|+|+-+++.+
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~~a~-~V~li~r~~~~   69 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTKYGS-KVYIIHRRDAF   69 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSS-EEEEECSSSSC
T ss_pred             CCCEEEEEcCchHHHHHHHHHhCCCC-cEEEEEecccc
Confidence            46899999999999999999999887 79999887754

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=93.85  E-value=0.034  Score=45.30  Aligned_cols=34  Identities=15%  Similarity=0.263  Sum_probs=31.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      +.+|.|||-|..|..-|..|.++|+ +|.+++++.
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~~   35 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTV   35 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSST
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence            5689999999999999999999999 699998753

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=93.56  E-value=0.045  Score=42.72  Aligned_cols=35  Identities=34%  Similarity=0.507  Sum_probs=29.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCC-cEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIE-DILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~-~V~vlEa~~   40 (496)
                      +.+|+|||+|-.|.++|+.|..++.- ++.|++..+
T Consensus         1 r~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           1 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            35899999999999999999999863 699999654

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=93.54  E-value=0.047  Score=43.48  Aligned_cols=35  Identities=9%  Similarity=0.403  Sum_probs=30.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCC-cEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIE-DILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~-~V~vlEa~   39 (496)
                      ++.+|+|||+|-.|-++||.|+..|.- ++.|+|..
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            457999999999999999999999863 58888864

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=93.54  E-value=0.034  Score=43.70  Aligned_cols=33  Identities=27%  Similarity=0.507  Sum_probs=28.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-CcEEEEeeC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGI-EDILILEAS   39 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~-~~V~vlEa~   39 (496)
                      ++|+|||+|-.|.++|+.|..+|. .++++++..
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   35 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence            689999999999999999999885 258888754

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.52  E-value=0.034  Score=45.03  Aligned_cols=34  Identities=21%  Similarity=0.364  Sum_probs=29.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ...|+|+|+|..|+.++..+...|.++|++.|.+
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~   60 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS   60 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEeccCC
Confidence            4579999999999999999999998568888864

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.48  E-value=0.047  Score=43.47  Aligned_cols=36  Identities=19%  Similarity=0.501  Sum_probs=30.6

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCC-cEEEEeeC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIE-DILILEAS   39 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~-~V~vlEa~   39 (496)
                      .++.+|.|||+|-.|-++||.|...|.- ++.|++..
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~   53 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDAD   53 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            3456899999999999999999999863 58898864

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.17  E-value=0.037  Score=42.03  Aligned_cols=48  Identities=19%  Similarity=0.180  Sum_probs=34.6

Q ss_pred             HHHHHHHhhccCCCCCccccceeeCceeEEEEEcCCceEEEeCCCcEEEcCEEEEecCh
Q 010995          194 LLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRNGVTVKTEDGCVYEANYVILSASI  252 (496)
Q Consensus       194 l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VI~A~p~  252 (496)
                      +.+.+.+.+.+      .|+++++|++|++++.+  +  +. .+++.+++|.||+|+..
T Consensus        74 ~~~~~~~~l~~------~GV~~~~~~~v~~~~~~--~--v~-~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          74 LSNMIKDMLEE------TGVKFFLNSELLEANEE--G--VL-TNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             HHHHHHHHHHH------TTEEEECSCCEEEECSS--E--EE-ETTEEEECSCEEEECCE
T ss_pred             HHHHHHHHHHH------CCcEEEeCCEEEEEeCC--E--EE-eCCCEEECCEEEEEEEe
Confidence            44444455554      69999999999988543  2  23 36678999999999863

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.99  E-value=0.036  Score=44.45  Aligned_cols=31  Identities=26%  Similarity=0.439  Sum_probs=28.9

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +|.|||-|..|...|..|.++|+ +|.+++++
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~-~V~~~d~~   32 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRN   32 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSC
T ss_pred             EEEEEehhHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            48999999999999999999999 79999875

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.90  E-value=0.053  Score=43.78  Aligned_cols=32  Identities=31%  Similarity=0.458  Sum_probs=26.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCC-cEEEEee
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIE-DILILEA   38 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~-~V~vlEa   38 (496)
                      ++|.|||.|..|-+-|+.|.++|+. +|..+++
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~   34 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDI   34 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEEC
Confidence            4699999999999999999999972 3555554

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=92.89  E-value=0.049  Score=43.49  Aligned_cols=36  Identities=25%  Similarity=0.545  Sum_probs=31.6

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      .+.++|+|||+|-.|-..|.+|.+.|.++|+|.-++
T Consensus        22 l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          22 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             cccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            457889999999999999999999998668888764

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.88  E-value=0.029  Score=44.96  Aligned_cols=32  Identities=25%  Similarity=0.326  Sum_probs=26.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEE
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILIL   36 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vl   36 (496)
                      ..++|+|||||..|+-+|..|++.|.+.++++
T Consensus        28 ~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~   59 (162)
T d1ps9a2          28 VGNKVAIIGCGGIGFDTAMYLSQPGESTSQNI   59 (162)
T ss_dssp             CCSEEEEECCHHHHHHHHHHHTCCSSCGGGCH
T ss_pred             cCCceEEEcCchhHHHHHHHHHHcCCccceeH
Confidence            35789999999999999999999997433433

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.87  E-value=0.095  Score=39.58  Aligned_cols=53  Identities=15%  Similarity=0.153  Sum_probs=35.8

Q ss_pred             HHHHHHHHhhccCCCCCccccceeeCceeEEEEEcCC----ceEEEeCC--C-c--EEEcCEEEEecC
Q 010995          193 HLLYKMAEEFLSTSDGKILDNRLKLNKVVRELQHSRN----GVTVKTED--G-C--VYEANYVILSAS  251 (496)
Q Consensus       193 ~l~~~l~~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~----~v~V~~~~--G-~--~~~ad~VI~A~p  251 (496)
                      .+.+.+.+.+++      .|++|++|+.|++++..++    ++.++..+  + +  ..++|.|++|+.
T Consensus        61 ~~~~~l~~~l~~------~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          61 DMANKIGEHMEE------HGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             HHHHHHHHHHHH------TTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             HHHHHHHHHHHH------CCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            355555555555      7999999999999986432    34454432  2 2  457999999874

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=92.85  E-value=0.06  Score=42.02  Aligned_cols=33  Identities=27%  Similarity=0.511  Sum_probs=28.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCC-cEEEEeeC
Q 010995            7 SPVIIIGAGVSGISAGKILAENGIE-DILILEAS   39 (496)
Q Consensus         7 ~dVvIIGaGiaGL~aA~~L~~~G~~-~V~vlEa~   39 (496)
                      .+|+|||+|-.|-++|+.|+.+|+- +++|++..
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~   35 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   35 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            5799999999999999999999863 68888854

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=92.85  E-value=0.048  Score=44.00  Aligned_cols=34  Identities=24%  Similarity=0.291  Sum_probs=30.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ....|+|+|+|..|+.++..++..|. +|+++|.+
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~   59 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARS   59 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcc-cccccchH
Confidence            34579999999999999999999999 79999864

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.69  E-value=0.045  Score=45.19  Aligned_cols=31  Identities=26%  Similarity=0.333  Sum_probs=27.8

Q ss_pred             CEEEE-CCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            8 PVIII-GAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         8 dVvII-GaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +|+|| |+|--|.+.|..|+++|+ +|+|..++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~-~V~l~~R~   33 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRR   33 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESS
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            48999 679999999999999999 79999764

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=92.63  E-value=0.086  Score=39.24  Aligned_cols=35  Identities=20%  Similarity=0.531  Sum_probs=31.0

Q ss_pred             CCCCEEEECCC-----------HHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAG-----------VSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaG-----------iaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..++|+|||+|           .++..|++.|++.|+ +++++--++
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~-~~IliN~NP   48 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGY-ETIMVNCNP   48 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTC-EEEEECCCT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCC-eEEEEecCh
Confidence            56789999998           799999999999999 699997655

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.56  E-value=0.05  Score=42.55  Aligned_cols=32  Identities=19%  Similarity=0.389  Sum_probs=28.2

Q ss_pred             CEEEECC-CHHHHHHHHHHHHCCC-CcEEEEeeC
Q 010995            8 PVIIIGA-GVSGISAGKILAENGI-EDILILEAS   39 (496)
Q Consensus         8 dVvIIGa-GiaGL~aA~~L~~~G~-~~V~vlEa~   39 (496)
                      +|+|||| |-.|-++|+.|+.+|. +++.++|..
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence            6999996 9999999999999986 468888864

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.47  E-value=0.036  Score=46.05  Aligned_cols=30  Identities=23%  Similarity=0.475  Sum_probs=26.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +|+|||.|-.||..|..|+ +|+ +|+.+|-+
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~-~V~g~Din   31 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQN-EVTIVDIL   31 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTS-EEEEECSC
T ss_pred             EEEEECCChhHHHHHHHHH-CCC-cEEEEECC
Confidence            4999999999999998886 599 79999864

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=92.27  E-value=0.072  Score=43.32  Aligned_cols=30  Identities=27%  Similarity=0.495  Sum_probs=28.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEee
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEA   38 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa   38 (496)
                      +|.|||-|..|..-|.+|.++|+ +|.++++
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~-~V~~~dr   32 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGF-KVAVFNR   32 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             EEEEEeehHHHHHHHHHHHHCCC-eEEEEEC
Confidence            59999999999999999999999 6999986

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=92.22  E-value=0.073  Score=41.48  Aligned_cols=33  Identities=27%  Similarity=0.563  Sum_probs=28.9

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC-CcEEEEeeCC
Q 010995            8 PVIIIGAGVSGISAGKILAENGI-EDILILEASD   40 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~-~~V~vlEa~~   40 (496)
                      +|+|||||-.|.+.|+.|+..|. .++.|+|..+
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            59999999999999999999984 3799998654

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.20  E-value=0.1  Score=41.16  Aligned_cols=34  Identities=15%  Similarity=0.299  Sum_probs=30.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      +-+|+|+|.|-.|...+..|.+.|. +|+|+|..+
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~-~v~vId~d~   36 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-CEEEEeccc
Confidence            3469999999999999999999999 699999753

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.18  E-value=0.066  Score=42.93  Aligned_cols=34  Identities=21%  Similarity=0.216  Sum_probs=29.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ...+|+|+|+|..|+.++..++..|. +|.+.+.+
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~   60 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDID   60 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCC-ccceecch
Confidence            34579999999999999999999998 79999753

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.16  E-value=0.076  Score=42.73  Aligned_cols=35  Identities=23%  Similarity=0.267  Sum_probs=30.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ....|+|+|+|..|+.++..++..|. +|.+++.++
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~   61 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSS   61 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSS
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccc-cccccccch
Confidence            35679999999999999998888999 699998754

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.99  E-value=0.074  Score=44.82  Aligned_cols=36  Identities=25%  Similarity=0.550  Sum_probs=30.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHH--------------------HCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILA--------------------ENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~--------------------~~G~~~V~vlEa~~   40 (496)
                      ..++|+|||+|-.++=||+.|.                    +.|.++|+++-++.
T Consensus        38 ~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          38 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             cCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            3578999999999999999887                    56777788887754

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.93  E-value=0.072  Score=45.25  Aligned_cols=36  Identities=19%  Similarity=0.419  Sum_probs=31.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHH--------------------CCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAE--------------------NGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~--------------------~G~~~V~vlEa~~   40 (496)
                      ..++|+|||+|-.++=||..|.+                    .|.++|+++-++.
T Consensus        38 ~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg   93 (225)
T d1cjca1          38 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG   93 (225)
T ss_dssp             TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             cCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence            35789999999999999999998                    4777899998764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=91.81  E-value=0.082  Score=42.84  Aligned_cols=35  Identities=23%  Similarity=0.280  Sum_probs=29.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ....|+|+|+|..|+.++..++..|.++|++.+.+
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~   61 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR   61 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccch
Confidence            45679999999999999999999997458888753

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=91.67  E-value=0.07  Score=43.59  Aligned_cols=34  Identities=29%  Similarity=0.463  Sum_probs=29.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ...|+|+|+|..|+.++..+...|.++|++.+.+
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~   62 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGS   62 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESC
T ss_pred             CCEEEEECCCccchhheecccccccccccccccc
Confidence            4679999999999999999999997458888864

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=91.26  E-value=0.066  Score=45.45  Aligned_cols=34  Identities=26%  Similarity=0.514  Sum_probs=29.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +.++|+|||+|-||.-+|+.|++.+. +++++=++
T Consensus        31 ~gK~V~VvG~G~Sa~dia~~~~~~~~-~~~~~~~~   64 (235)
T d1w4xa2          31 SGQRVGVIGTGSSGIQVSPQIAKQAA-ELFVFQRT   64 (235)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBS-EEEEEESS
T ss_pred             CCCEEEEECCCccHHHHHHHHHhhhc-cccccccc
Confidence            56899999999999999999999998 57776544

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=91.16  E-value=0.091  Score=42.40  Aligned_cols=35  Identities=20%  Similarity=0.258  Sum_probs=30.8

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      .+.++|+|+|+|=++-++++.|.+.+. +|+|+-|+
T Consensus        16 ~~~k~vlIlGaGGaarai~~aL~~~~~-~i~I~nR~   50 (171)
T d1p77a1          16 RPNQHVLILGAGGATKGVLLPLLQAQQ-NIVLANRT   50 (171)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTTC-EEEEEESS
T ss_pred             CCCCEEEEECCcHHHHHHHHHHcccCc-eeeeccch
Confidence            356789999999999999999998776 79999874

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=91.13  E-value=0.11  Score=41.92  Aligned_cols=35  Identities=23%  Similarity=0.300  Sum_probs=29.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ....|+|+|+|..|+.++..+...|.++|++.|.+
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~   62 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDIN   62 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccc
Confidence            34579999999999999999999998557777753

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.04  E-value=0.094  Score=40.96  Aligned_cols=32  Identities=31%  Similarity=0.556  Sum_probs=27.8

Q ss_pred             CEEEECC-CHHHHHHHHHHHHCCC-CcEEEEeeC
Q 010995            8 PVIIIGA-GVSGISAGKILAENGI-EDILILEAS   39 (496)
Q Consensus         8 dVvIIGa-GiaGL~aA~~L~~~G~-~~V~vlEa~   39 (496)
                      +|.|||| |-.|-++|+.|+.+|. +++.|++..
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~   35 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGRE   35 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccch
Confidence            5999996 9999999999999985 378888864

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.93  E-value=0.11  Score=42.93  Aligned_cols=35  Identities=23%  Similarity=0.316  Sum_probs=29.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ...+|+|+|+|..||.++..++..|..+|++.+.+
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~   59 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLN   59 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeeccc
Confidence            34579999999999999999988887568888764

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=90.90  E-value=0.085  Score=45.47  Aligned_cols=33  Identities=33%  Similarity=0.578  Sum_probs=30.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEee
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEA   38 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa   38 (496)
                      +.+|+|||+|-.|-.+|..|++.|+++++|+|.
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~   62 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDF   62 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            468999999999999999999999988999985

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=90.79  E-value=0.098  Score=41.22  Aligned_cols=31  Identities=19%  Similarity=0.262  Sum_probs=28.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +|.|||.|..|.+.|..|.++|+ +|++..+.
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~-~v~~~~~~   32 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSLEG   32 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCC-eEEEEcCc
Confidence            58999999999999999999999 79888754

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.67  E-value=0.13  Score=41.59  Aligned_cols=34  Identities=21%  Similarity=0.283  Sum_probs=29.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ...|+|+|+|..||.+...++..|.++|.++|.+
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~   63 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLN   63 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceEEEecCc
Confidence            4459999999999999999999996469999864

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.65  E-value=0.1  Score=42.13  Aligned_cols=34  Identities=26%  Similarity=0.307  Sum_probs=27.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEee
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEA   38 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa   38 (496)
                      ...+|+|+|+|..|+.++..++..|.+.|.+.+.
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~   61 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI   61 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEES
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeecc
Confidence            4567999999999999999999999854455554

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.59  E-value=0.13  Score=42.62  Aligned_cols=34  Identities=21%  Similarity=0.414  Sum_probs=30.4

Q ss_pred             CCCCEEEECC-CHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGA-GVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGa-GiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      .+++|+|+|| |..|-..+.+|.++|+ +|+++-++
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~   36 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRD   36 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcC
Confidence            4678999995 9999999999999999 79999764

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.52  E-value=0.11  Score=40.31  Aligned_cols=32  Identities=22%  Similarity=0.455  Sum_probs=27.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC-CcEEEEeeC
Q 010995            8 PVIIIGAGVSGISAGKILAENGI-EDILILEAS   39 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~-~~V~vlEa~   39 (496)
                      +|.|||||-.|.++|+.|+.++. .++.|+|..
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~   34 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecc
Confidence            68999999999999999999885 268898854

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=90.46  E-value=0.18  Score=37.87  Aligned_cols=39  Identities=33%  Similarity=0.544  Sum_probs=32.5

Q ss_pred             CCC-CCCCCEEEECCC-----------HHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            1 MDS-TSRSPVIIIGAG-----------VSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         1 m~~-~~~~dVvIIGaG-----------iaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      |.. ...++|+|||+|           .++..|+..|++.|+ +++++--++
T Consensus         1 mp~~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~-~~iliN~NP   51 (127)
T d1a9xa3           1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGY-RVINVNSNP   51 (127)
T ss_dssp             CCCCSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTC-EEEEECSCT
T ss_pred             CCCCCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCC-eEEEecCch
Confidence            543 356889999998           589999999999999 699998765

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.29  E-value=0.12  Score=40.11  Aligned_cols=32  Identities=19%  Similarity=0.244  Sum_probs=27.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC-CcEEEEeeC
Q 010995            8 PVIIIGAGVSGISAGKILAENGI-EDILILEAS   39 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~-~~V~vlEa~   39 (496)
                      +|.|||+|-.|-++|+.|+.+|. .++.|+|..
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   34 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA   34 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecc
Confidence            69999999999999999999885 368888854

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=90.14  E-value=0.16  Score=40.61  Aligned_cols=34  Identities=21%  Similarity=0.264  Sum_probs=29.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ....|+|+|+|..|+.++..++..|. +|++++.+
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~   63 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTS   63 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccc-cchhhccc
Confidence            45679999999999999999999999 68888754

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=88.72  E-value=0.23  Score=39.92  Aligned_cols=34  Identities=21%  Similarity=0.334  Sum_probs=28.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ...|+|+|+|..|+.++..++..|-.+|++.+.+
T Consensus        29 g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~   62 (175)
T d1cdoa2          29 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLN   62 (175)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCEEEEEecCCccchHHHHHHHHhhchheeecch
Confidence            3458899999999999999999987557777754

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=88.68  E-value=0.15  Score=40.11  Aligned_cols=35  Identities=26%  Similarity=0.305  Sum_probs=31.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ..+.|+|+|=|+.|-.+|..|+..|. +|+|.|-.+
T Consensus        22 aGk~vvV~GYG~vGrG~A~~~rg~Ga-~V~V~E~DP   56 (163)
T d1v8ba1          22 SGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDP   56 (163)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCH
T ss_pred             cCCEEEEecccccchhHHHHHHhCCC-EEEEEecCc
Confidence            46789999999999999999999999 799999754

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=88.65  E-value=0.19  Score=35.98  Aligned_cols=33  Identities=27%  Similarity=0.405  Sum_probs=29.1

Q ss_pred             CCCCEEEECCCHHHHHH-HHHHHHCCCCcEEEEee
Q 010995            5 SRSPVIIIGAGVSGISA-GKILAENGIEDILILEA   38 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~a-A~~L~~~G~~~V~vlEa   38 (496)
                      +.++|-+||-|=+|+++ |..|.++|+ +|+--|.
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~   40 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDI   40 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEES
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeC
Confidence            46789999999999988 999999999 6988775

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=88.61  E-value=0.24  Score=41.35  Aligned_cols=35  Identities=20%  Similarity=0.477  Sum_probs=31.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +..+|+|.|||-+|+..|..|.+.|.+++.++|+.
T Consensus        25 ~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          25 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             hhcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            45789999999999999999999998888888874

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.49  E-value=0.23  Score=39.21  Aligned_cols=34  Identities=21%  Similarity=0.340  Sum_probs=31.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ..+.|+|||=|..|-.+|..|+..|. +|+|.|..
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~-~V~v~e~d   56 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGFGA-RVIITEID   56 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             cCCEEEEeccccccHHHHHHHHhCCC-eeEeeecc
Confidence            46789999999999999999999999 79999974

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.46  E-value=0.17  Score=40.37  Aligned_cols=34  Identities=21%  Similarity=0.264  Sum_probs=29.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ....|+|+|+|..|+.++..++..|. +|.+.+.+
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~   60 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIG   60 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCC-eEeccCCC
Confidence            34579999999999999999999999 69888753

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=88.44  E-value=0.21  Score=40.22  Aligned_cols=34  Identities=24%  Similarity=0.208  Sum_probs=28.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ...|+|+|+|..|+.++..++..|.++|.+.+.+
T Consensus        28 G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~   61 (174)
T d1p0fa2          28 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTH   61 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceeeccCCh
Confidence            4469999999999999999999997557777753

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=88.36  E-value=0.25  Score=38.18  Aligned_cols=32  Identities=28%  Similarity=0.557  Sum_probs=27.0

Q ss_pred             CCEEEEC-CCHHHHHHHHHHHHCCCC-cEEEEee
Q 010995            7 SPVIIIG-AGVSGISAGKILAENGIE-DILILEA   38 (496)
Q Consensus         7 ~dVvIIG-aGiaGL~aA~~L~~~G~~-~V~vlEa   38 (496)
                      .+|.||| +|-.|-++|+.|..+|.- ++.|+|-
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            3699999 699999999999999864 4777773

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=88.30  E-value=0.24  Score=43.35  Aligned_cols=35  Identities=31%  Similarity=0.450  Sum_probs=31.5

Q ss_pred             CCCCEEEECC-CHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            5 SRSPVIIIGA-GVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         5 ~~~dVvIIGa-GiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      ++++|+|+|| |..|-..+..|.++|+ +|+++.++.
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R~~   37 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGH-PTFLLVRES   37 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEECCC
Confidence            4788999997 9999999999999999 699998753

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.02  E-value=0.16  Score=41.14  Aligned_cols=34  Identities=24%  Similarity=0.388  Sum_probs=29.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      .+.++|+|||+|-++-++++.|++.|  +|+|+-|+
T Consensus        16 ~~~k~vlIlGaGG~arai~~aL~~~~--~i~I~nR~   49 (177)
T d1nvta1          16 VKDKNIVIYGAGGAARAVAFELAKDN--NIIIANRT   49 (177)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSSS--EEEEECSS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHcccc--ceeeehhh
Confidence            45788999999999999999998776  59998764

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=88.02  E-value=0.36  Score=35.47  Aligned_cols=37  Identities=14%  Similarity=0.345  Sum_probs=32.4

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      +...+|.|||||==|-..|....+.|+ +|.+++.++.
T Consensus         9 ~~~~kigIlGgGQL~rMla~aA~~lG~-~v~v~d~~~~   45 (111)
T d1kjqa2           9 PAATRVMLLGSGELGKEVAIECQRLGV-EVIAVDRYAD   45 (111)
T ss_dssp             TTCCEEEEESCSHHHHHHHHHHHTTTC-EEEEEESSTT
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHCCC-EEEEEcCCCC
Confidence            345789999999999999999999999 7999998643

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=87.99  E-value=0.22  Score=39.93  Aligned_cols=35  Identities=23%  Similarity=0.276  Sum_probs=28.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ....|+|+|+|..|+.++..++..|.+.|++.+.+
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~   66 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVK   66 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccch
Confidence            34579999999999999999988887456777764

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=87.49  E-value=0.31  Score=39.82  Aligned_cols=35  Identities=14%  Similarity=0.433  Sum_probs=30.8

Q ss_pred             CCCCCEEEEC-CCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            4 TSRSPVIIIG-AGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         4 ~~~~dVvIIG-aGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      -+.+.|+|.| +|-.|...|..|+++|. +|+++.++
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~   56 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRK   56 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccc
Confidence            3578899999 69999999999999999 79999875

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=87.27  E-value=0.3  Score=42.94  Aligned_cols=34  Identities=24%  Similarity=0.284  Sum_probs=30.2

Q ss_pred             CCCCEEEECC-CHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGA-GVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGa-GiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ++.+|+|+|| |..|...+.+|.++|+ +|+++-++
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~-~V~~~~R~   36 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRP   36 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            4667999997 9999999999999999 69999764

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=86.54  E-value=0.24  Score=38.81  Aligned_cols=31  Identities=26%  Similarity=0.261  Sum_probs=28.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      +|.|||+|-.|-+-|..|.++|+ +|+|.+++
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~-~i~v~~r~   32 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPH-ELIISGSS   32 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSC-EEEEECSS
T ss_pred             EEEEEeccHHHHHHHHHHHhCCC-eEEEEcCh
Confidence            48999999999999999999999 79988763

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=85.99  E-value=0.33  Score=38.70  Aligned_cols=35  Identities=20%  Similarity=0.282  Sum_probs=28.9

Q ss_pred             CCCCEEEECC-CHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            5 SRSPVIIIGA-GVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         5 ~~~dVvIIGa-GiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ...+|+|+|+ |..|+.++..++..|.++|++.+.+
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~   62 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR   62 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccc
Confidence            3456999995 9999999999999996568888864

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=85.76  E-value=0.43  Score=38.27  Aligned_cols=34  Identities=21%  Similarity=0.235  Sum_probs=28.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEAS   39 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~   39 (496)
                      ...|+|+|+|-.|++++..++..|..+|.+.+.+
T Consensus        29 GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~   62 (176)
T d2jhfa2          29 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDIN   62 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcCCceEEeecCc
Confidence            3459999999999999999999986467777653

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=84.85  E-value=0.55  Score=37.69  Aligned_cols=35  Identities=31%  Similarity=0.542  Sum_probs=30.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEeeCCC
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEASDR   41 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa~~~   41 (496)
                      +.+|+|||||.+|+.+|..|++.|. +|+|++.+++
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~-~v~i~~~~~~   37 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGY-QGLITVVGDE   37 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTC-CSCEEEEESS
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCC-ceEEEEEecc
Confidence            5679999999999999999999999 6888876553

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=84.17  E-value=0.69  Score=37.68  Aligned_cols=35  Identities=29%  Similarity=0.332  Sum_probs=29.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCC-cEEEEeeCCCC
Q 010995            8 PVIIIGAGVSGISAGKILAENGIE-DILILEASDRI   42 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G~~-~V~vlEa~~~~   42 (496)
                      +|+|||||.+|+.+|..|++.+.. +|+|+|+++.+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            599999999999999999997542 69999986643

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=83.99  E-value=0.44  Score=37.19  Aligned_cols=31  Identities=23%  Similarity=0.330  Sum_probs=26.9

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC-CCcEEEEeeC
Q 010995            8 PVIIIGAGVSGISAGKILAENG-IEDILILEAS   39 (496)
Q Consensus         8 dVvIIGaGiaGL~aA~~L~~~G-~~~V~vlEa~   39 (496)
                      +|.+||+|-.|-+-|..|.++| + +|.+++++
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~-~i~v~~r~   33 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGY-RIYIANRG   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSC-EEEEECSS
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCC-cEEEEeCC
Confidence            5899999999999999998887 6 79888763

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.02  E-value=0.45  Score=44.22  Aligned_cols=33  Identities=33%  Similarity=0.473  Sum_probs=30.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCcEEEEee
Q 010995            6 RSPVIIIGAGVSGISAGKILAENGIEDILILEA   38 (496)
Q Consensus         6 ~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa   38 (496)
                      ..+|.|||+|--|-..|..|+..|+.+++|+|-
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~   69 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDM   69 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECC
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEEC
Confidence            468999999999999999999999978999986

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=82.43  E-value=0.6  Score=36.10  Aligned_cols=33  Identities=18%  Similarity=0.342  Sum_probs=26.0

Q ss_pred             CEEEEC-CCHHHHHHHHHHHHC-CC-CcEEEEeeCC
Q 010995            8 PVIIIG-AGVSGISAGKILAEN-GI-EDILILEASD   40 (496)
Q Consensus         8 dVvIIG-aGiaGL~aA~~L~~~-G~-~~V~vlEa~~   40 (496)
                      +|.||| +|-.|-+.|+.|+.+ +. .++.++|..+
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            699999 599999999998753 42 2699998643

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=81.57  E-value=0.94  Score=37.09  Aligned_cols=34  Identities=26%  Similarity=0.436  Sum_probs=30.6

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCcEEEEee
Q 010995            4 TSRSPVIIIGAGVSGISAGKILAENGIEDILILEA   38 (496)
Q Consensus         4 ~~~~dVvIIGaGiaGL~aA~~L~~~G~~~V~vlEa   38 (496)
                      .+.++|+|.|-|-.|..+|.+|.+.|. +|++.|-
T Consensus        25 L~gk~v~IqG~G~VG~~~A~~L~~~Ga-kvvv~d~   58 (201)
T d1c1da1          25 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADT   58 (201)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEecc
Confidence            456789999999999999999999999 6998875

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.29  E-value=0.93  Score=38.18  Aligned_cols=34  Identities=12%  Similarity=0.233  Sum_probs=29.1

Q ss_pred             CCCEEEECC-CHHHHHHHHHHHHCCCCcEEEEeeCC
Q 010995            6 RSPVIIIGA-GVSGISAGKILAENGIEDILILEASD   40 (496)
Q Consensus         6 ~~dVvIIGa-GiaGL~aA~~L~~~G~~~V~vlEa~~   40 (496)
                      .+.|+|.|| |=-|.+.|..|+++|. +|.+++...
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~-~V~~~~~~~   36 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVE   36 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            577999996 5589999999999999 799997754