Citrus Sinensis ID: 011003

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490------
Protein Sequence
MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGRV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccEEccccEEEEEEEccccccccccccEEEEEEEEEEccccEEEccccccccEEEEEccccccccHHHHHHccccccEEEEEEccccccccccccccccccccEEEEEEEccccccccccccccEEEEEEEccccccccccccEEEEEEEEEEcccEEEEccccEEEEEcccccccHHHHHHHccccccEEEEEEccccccccccccccccccccccccHHHHHHHHHccccEEEEcccccEEEEEEEccccccccccccEEEEEEEEEEccccEEEEcccccccccEEEEccccccccHHHHHHHccccccEEEEEEccccccccccccccccccccccEEEEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccEEcHHHcEEEEEEccccccccccccEEEEEEEEEEccccEEEEcccccccEEEEcccccccHHHHHHHHHcccccEEEEEEcHHHccccccEcccEcccccEEEEEEEEEccccccccccccEEEEEEEccccccccccccEEEEEEEEEEccccEEcccccEEEEEccccccHHHHHHHHHcccccEEEEEEccccccccccccccccccccccccEEEEEEEEEEEcccccccccccEEEEEEEccccccccccccEEEEEEEEEcccccEEEcccccccccEEEEEEccccccHHHHHHHHHcccccEEEEEEccccccccccccccccccccccEEEEEEEEEEcccccccEEEcccccHHHHHHHHHcccHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mdedfdipaanemdadmdlpddapmmkvgeekeignQGLKKKLVkegegwdtpengdevevhytgtlldgtqfdssrdrstpfkftlgqgnvikgWDIGIKTmkkgenavftippelaygesgspptippnatlqfDVELLSWTSVKDICKDGGIIKKILKegekwenpkdlDEVLVNYEARLEdgmvvgkadgveftvkdghfcPTLAKAVKTMKKGEKVLLAVkpqygfgekgksasgnegavppnaTLQIALELVSWKTVSEITDDKKVIKKILKegdgferpnegaVVKVKLIGklqdgtvfvkkgHSEEEqlfefktdeeQVIDGLDRAVITMKKNEVALLTIapeyafgsaesqqelavvppnstvHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTkkcessvqkgsgihsdgrfrfgrv
Flexible Loop (DISEMBL)
mdedfdipaanemdadmdlpDDAPMMKVGeekeignqglkkKLVKEgegwdtpengdEVEVHYTGTLLDGTQFDSSRDRSTpfkftlgqgnvikGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKIlkegekwenpkdlDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKtvseitddkkVIKKIlkegdgferpnegavVKVKLIGKLQDGTVFVKKGHSEEeqlfefktdeeqVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSfekekeswdmNTEEKIeaagkkkeqgntlfkagkyaraskrYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTkkcessvqkgsgihsdgrfrfgrv
Low Complexity Region (SEG)
MDEDFDIPAANEmdadmdlpddapmmKVGEEKEIGNQglkkklvkegegWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVkdickdggiikkilkegekWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTeekieaagkkkeQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGRV
Disordered region (IsUnstruct)
**********************************************************VEVHYTGTLLDGT**********PFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAY***********NATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGF*****************ATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSA****ELAVVPPNSTVHYEVELVSF****************************FKAGKYARASKRYEKAVKYIEYDTSFGD****QAKALKVACNLNNAACKLKLKDYKQAEKLCT************************
Disordered Region (DISOPRED)
***DFDIPAANEM*****************E*EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKE***WENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGK*********PPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQ****VVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY*************ALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG**
Disordered Region (DISEMBL)
MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGE*********GAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT************IHSDGRFRFGRV
Disordered Region (DISPRO)
*****************DLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGRV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	496	2.2.26 [Sep-21-2011]
Q38931	551	Peptidyl-prolyl cis-trans	yes	no	0.957	0.862	0.822	0.0
Q9FJL3	578	Peptidyl-prolyl cis-trans	no	no	0.929	0.797	0.801	0.0
Q43207	559	70 kDa peptidyl-prolyl is	N/A	no	0.955	0.847	0.783	0.0
Q02790	459	Peptidyl-prolyl cis-trans	yes	no	0.651	0.703	0.362	3e-51
Q9TRY0	459	Peptidyl-prolyl cis-trans	yes	no	0.651	0.703	0.367	3e-51
P30416	458	Peptidyl-prolyl cis-trans	yes	no	0.651	0.705	0.356	1e-48
Q9QVC8	458	Peptidyl-prolyl cis-trans	yes	no	0.651	0.705	0.353	2e-48
P27124	458	Peptidyl-prolyl cis-trans	yes	no	0.651	0.705	0.364	2e-46
Q7DMA9	635	Peptidyl-prolyl cis-trans	no	no	0.897	0.700	0.297	6e-46
Q9XSI2	457	Peptidyl-prolyl cis-trans	N/A	no	0.504	0.547	0.402	2e-44

>sp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2

 Score =  784 bits (2025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/478 (82%), Positives = 429/478 (89%), Gaps = 3/478 (0%)

Query: 1   MDEDFDIPAANEMDADMDLPDD--APMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDE 58
           MD +F++P    M+ D D+     A  +KVGEEKEI  QGLKKKL+KEGEG++TPENGDE
Sbjct: 1   MDANFEMPPVGGMNDDDDMDFGDGASFLKVGEEKEI-QQGLKKKLLKEGEGYETPENGDE 59

Query: 59  VEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
           VEVHYTGTLLDGT+FDSSRDR+TPFKFTLGQG VIKGWDIGIKTMKKGENAVFTIP ELA
Sbjct: 60  VEVHYTGTLLDGTKFDSSRDRATPFKFTLGQGQVIKGWDIGIKTMKKGENAVFTIPAELA 119

Query: 119 YGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVN 178
           YGESGSPPTIP NATLQFDVELL W SVKDICKDGG+ KKIL  GEKWENPKDLDEVLV 
Sbjct: 120 YGESGSPPTIPANATLQFDVELLKWDSVKDICKDGGVFKKILAVGEKWENPKDLDEVLVK 179

Query: 179 YEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA 238
           +EA+LEDG VVGK+DGVEFTVKDGHFCP L KAVKTMKKGEKVLL VKPQYGFGEKGK A
Sbjct: 180 FEAKLEDGTVVGKSDGVEFTVKDGHFCPALTKAVKTMKKGEKVLLTVKPQYGFGEKGKPA 239

Query: 239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIG 298
           S  EGAVPPNATL+I LELVSWKTVSE+TDD KV+KK+LKEGDG+ERPNEGAVVKVKLIG
Sbjct: 240 SAGEGAVPPNATLEINLELVSWKTVSEVTDDNKVVKKVLKEGDGYERPNEGAVVKVKLIG 299

Query: 299 KLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358
           KLQDGTVF+KKGH E E+ FEFKTDEEQV+DGLDRAV+ MKK EVAL+TI PEYAFGS E
Sbjct: 300 KLQDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNE 359

Query: 359 SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARA 418
           SQQELAVVPPNSTV YEV+L++F+KE+ESWDMNTEEKIEAA KKKE+GN+ FK GKY+ A
Sbjct: 360 SQQELAVVPPNSTVTYEVDLLTFDKERESWDMNTEEKIEAASKKKEEGNSKFKGGKYSLA 419

Query: 419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE 476
           SKRYEKAVK+IEYDTSF +EEKKQAKALKVACNLN+AACKLKLKDYKQAEKLCTK  E
Sbjct: 420 SKRYEKAVKFIEYDTSFSEEEKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTKVLE 477

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Co-chaperone that positively modulates thermotolerance by interacting with HSP90.1 and increasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q9FJL3|FKB65_ARATH Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana GN=FKBP65 PE=1 SV=1

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/463 (80%), Positives = 420/463 (90%), Gaps = 2/463 (0%)

Query: 16  DMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDS 75
           D D  D AP +K+GEE EIG  GLKKKLVKE E WDTPENGDEVEVHYTGTLLDGT+FDS
Sbjct: 25  DNDEADSAPYLKIGEEMEIGKSGLKKKLVKECEKWDTPENGDEVEVHYTGTLLDGTKFDS 84

Query: 76  SRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQ 135
           SRDR TPFKFTLGQG+VIKGWD+GIKTMKKGENA+FTIPPELAYGE+GSPPTIPPNATLQ
Sbjct: 85  SRDRGTPFKFTLGQGHVIKGWDLGIKTMKKGENAIFTIPPELAYGETGSPPTIPPNATLQ 144

Query: 136 FDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGV 195
           FDVEL++W SVKDIC DGG+ KKI+ EGEKWE PKDLDEV V YEARLEDG +VGK+DGV
Sbjct: 145 FDVELIAWRSVKDICGDGGVSKKIIVEGEKWEKPKDLDEVYVKYEARLEDGTIVGKSDGV 204

Query: 196 EFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSAS-GNEGAVPPNATLQIA 254
           EFTVK+GHFCP L+KAVKTMK+GEKVLL VKPQYGFGE G+ AS G + A+PPNATLQI 
Sbjct: 205 EFTVKEGHFCPALSKAVKTMKRGEKVLLTVKPQYGFGEFGRPASDGLQAAIPPNATLQID 264

Query: 255 LELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDG-TVFVKKGHSE 313
           LELVSWKTV E+TDD+KVIKKILKEG+G+ERPNEGA+VK+KLIGKLQDG TVFVKKGH E
Sbjct: 265 LELVSWKTVVEVTDDRKVIKKILKEGEGYERPNEGAIVKLKLIGKLQDGTTVFVKKGHEE 324

Query: 314 EEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVH 373
           +E+ FEFK DEEQVI+GL++AV+ MKK EVAL+TI+PEYAFGS+ES+QELAV+PPNSTV+
Sbjct: 325 DEEPFEFKIDEEQVIEGLEKAVMGMKKGEVALITISPEYAFGSSESKQELAVIPPNSTVY 384

Query: 374 YEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT 433
           YEVELVSF KEKESWDMNT+E+IEAAGKKKE+GN LFKAGKYARASKRYE+ VKYIEYD+
Sbjct: 385 YEVELVSFIKEKESWDMNTQERIEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEYDS 444

Query: 434 SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE 476
           +F +EEKK++K LK+ACNLN+AACKLKLKDYK+A KL TK  E
Sbjct: 445 TFDEEEKKKSKDLKIACNLNDAACKLKLKDYKEAAKLSTKVLE 487

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Co-chaperone that negatively modulates thermotolerance by interacting with FKBP62 and decreasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family. Plays a positive role in tolerance to intracellular acid stress by maintaining the pH homeostasis.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q43207|FKB70_WHEAT 70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=1 SV=1

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/480 (78%), Positives = 416/480 (86%), Gaps = 6/480 (1%)

Query: 1   MDEDFDIPAANEMDADMDLPD----DAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENG 56
           MD+DFDIPA ++M     + D    + P MKVGEE EIG QGLKKKL+KEGEGWDTPE G
Sbjct: 1   MDDDFDIPAGDDMMMGDGMGDFGGAEGPGMKVGEENEIGKQGLKKKLLKEGEGWDTPEVG 60

Query: 57  DEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPE 116
           DEVEVHYTGTLLDG +FDSSRDR   FKF LGQG VIKGWD GIKTMKKGENA+FTIPPE
Sbjct: 61  DEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTIPPE 120

Query: 117 LAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVL 176
           LAYGESGSPPTIP NATLQFDVELLSWTSV+DI KDGGI KKILKEG+KWENPKD DEV 
Sbjct: 121 LAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENPKDPDEVF 180

Query: 177 VNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGK 236
           V YEARLEDG VV K++GVEFTVKDGH CP LAKAVKTMKKGEKVLLAVKPQYGFGE G+
Sbjct: 181 VKYEARLEDGTVVSKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGR 240

Query: 237 SASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKL 296
            A+G  GAVPPNA+L I LELVSWKTV+EI DDKK++KK+LKE +G+ERPNEGAVV VK+
Sbjct: 241 PAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKI 300

Query: 297 IGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGS 356
            GKLQDGTVF+KKGH E+E  FEFKTDEE VI+GLDRAV+ MKK EVAL+TI PEYA+GS
Sbjct: 301 TGKLQDGTVFLKKGHDEQEP-FEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGS 359

Query: 357 AESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYA 416
            ES+Q+ A+VPPNSTV YEVELVSF K+KESWD+N  EKIEAAG KKE+GN LFK+GKYA
Sbjct: 360 TESKQD-AIVPPNSTVIYEVELVSFVKDKESWDLNNSEKIEAAGTKKEEGNALFKSGKYA 418

Query: 417 RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE 476
           RASKRYEKA K+IEYDTSF ++EKKQ+K LK+ CNLNNAACKLKLKDYKQAEKLCTK  E
Sbjct: 419 RASKRYEKAAKFIEYDTSFSEDEKKQSKQLKITCNLNNAACKLKLKDYKQAEKLCTKVLE 478

PPIases accelerate the folding of proteins during protein synthesis.

Triticum aestivum (taxid: 4565)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q02790|FKBP4_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3

 Score =  203 bits (516), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 126/348 (36%), Positives = 197/348 (56%), Gaps = 25/348 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCP 206
           +D G++K I +EG   E P   D V V+Y   L DG      + + D   F +  G    
Sbjct: 29  QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 88

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
               A+ TMK GE   +  KP+Y +G     ++G+   +PPNATL   +EL  +K   ++
Sbjct: 89  AWDIAIATMKVGEVCHITCKPEYAYG-----SAGSPPKIPPNATLVFEVELFEFKG-EDL 142

Query: 267 TD--DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE 324
           T+  D  +I++I   G+G+ +PNEGA+V+V L G  +D           +++   F+  E
Sbjct: 143 TEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------DQRELRFEIGE 194

Query: 325 EQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            + +D   GL+RA+  M+K E +++ + P YAFGS    +E   +PPN+ + YE+ L SF
Sbjct: 195 GENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSV--GKEKFQIPPNAELKYELHLKSF 252

Query: 382 EKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKK 441
           EK KESW+MN+EEK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF +EE +
Sbjct: 253 EKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQ 312

Query: 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDG 489
           +A+AL++A +LN A C LKL+ +  A + C K  E       G+   G
Sbjct: 313 KAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRG 360

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening. Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9TRY0|FKBP4_BOVIN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Bos taurus GN=FKBP4 PE=1 SV=4

 Score =  202 bits (515), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 128/348 (36%), Positives = 198/348 (56%), Gaps = 25/348 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCP 206
           +D G++K I +EG   E P   D V V+Y   L DG      + + D   F +  G    
Sbjct: 29  QDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDRFSFDLGKGEVIK 88

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
               AV TMK GE   +  KP+Y +G      +G+   +PPNATL   +EL  +K   ++
Sbjct: 89  AWDIAVATMKVGEVCHITCKPEYAYG-----LAGSPPKIPPNATLVFEVELFEFKG-EDL 142

Query: 267 TD--DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE 324
           T+  D  +I++I   G+G+ +PNEGA+V+V L G  +D  VF ++          F+  E
Sbjct: 143 TEEEDGGIIRRIRTRGEGYAKPNEGALVEVALEGYFKD-QVFDRRE-------LRFEVGE 194

Query: 325 EQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            + +D   GL++A+  M+K E +++ + P YAFGSA   +E   +PPN+ + YE+ L SF
Sbjct: 195 GESMDLPCGLEKAIQRMEKGEHSIVYLKPRYAFGSA--GKEKFQIPPNAELKYEIHLKSF 252

Query: 382 EKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKK 441
           EK KESW+M++EEK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF DE+ +
Sbjct: 253 EKAKESWEMSSEEKLEQSTIVKERGTVYFKEGKYKQAVLQYKKIVSWLEYESSFSDEDAE 312

Query: 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDG 489
           +A+AL++A +LN A C LKL+ +  A + C K  E       G+   G
Sbjct: 313 KAQALRLASHLNLAMCHLKLQAFSAAIENCNKALELDSNNEKGLFRRG 360

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P30416|FKBP4_MOUSE Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Mus musculus GN=Fkbp4 PE=1 SV=5

 Score =  194 bits (493), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 124/348 (35%), Positives = 192/348 (55%), Gaps = 25/348 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCP 206
           +D G++K I +EG   E P   D V V+Y   L DG      + + D   F +  G    
Sbjct: 29  QDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 88

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
               AV TMK GE   +  KP+Y +G     A+G+   +PPNATL   +EL  +K   ++
Sbjct: 89  AWDIAVATMKVGEVCHITCKPEYAYG-----AAGSPPKIPPNATLVFEVELFEFKG-EDL 142

Query: 267 TD--DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE 324
           T+  D  +I++I   G+G+ RPN+GA+V+V L G  +D           +++   F+  E
Sbjct: 143 TEEEDGGIIRRIRTRGEGYARPNDGAMVEVALEGYHKDRLF--------DQRELCFEVGE 194

Query: 325 EQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            + +D   GL+ A+  M+K E +++ + P YAFGS    +E   +PP++ + YEV L SF
Sbjct: 195 GESLDLPCGLEEAIQRMEKGEHSIVYLKPSYAFGSV--GKERFQIPPHAELRYEVRLKSF 252

Query: 382 EKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKK 441
           EK KESW+M++ EK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF  EE +
Sbjct: 253 EKAKESWEMSSAEKLEQSNIVKERGTAYFKEGKYKQALLQYKKIVSWLEYESSFSGEEMQ 312

Query: 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDG 489
           +  AL++A +LN A C LKL+ +  A + C K  E       G+   G
Sbjct: 313 KVHALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRG 360

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9QVC8|FKBP4_RAT Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Rattus norvegicus GN=Fkbp4 PE=1 SV=3

 Score =  194 bits (492), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/348 (35%), Positives = 191/348 (54%), Gaps = 25/348 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCP 206
           +D G++K I +EG   E     D V V+Y   L DG      + + D   F +  G    
Sbjct: 29  QDEGVLKVIKREGTGTETAMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 88

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
               AV TMK GE   +  KP+Y +G     ++G+   +PPNATL   +EL  +K   ++
Sbjct: 89  AWDIAVATMKVGEVCHITCKPEYAYG-----SAGSPPKIPPNATLVFEVELFEFKG-EDL 142

Query: 267 TDDKK--VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE 324
           T+D+   +I++I   G+G+ RPN+GA+V+V L G   D           +++   F+  E
Sbjct: 143 TEDEDGGIIRRIRTRGEGYARPNDGAMVEVALEGYYNDRLF--------DQRELCFEVGE 194

Query: 325 EQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            + +D   GL+ A+  M+K E +++ + P YAFGS    +E   +PP++ + YEV L SF
Sbjct: 195 GESLDLPCGLEEAIQRMEKGEHSIVYLKPSYAFGSV--GKERFQIPPHAELRYEVHLKSF 252

Query: 382 EKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKK 441
           EK K SW+MN+EEK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF  EE +
Sbjct: 253 EKAKASWEMNSEEKLEQSNIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSGEEMQ 312

Query: 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDG 489
           +  AL++A +LN A C LKL+ +  A + C K  E       G+   G
Sbjct: 313 KVHALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRG 360

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). Plays a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly. The PPIase activity controls neuronal growth cones via regulation of TRPC1 channel opening.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P27124|FKBP4_RABIT Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Oryctolagus cuniculus GN=FKBP4 PE=1 SV=3

 Score =  187 bits (474), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 127/348 (36%), Positives = 197/348 (56%), Gaps = 25/348 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCP 206
           +D G++K I +EG   E P   D V V+Y   L DG      + + D   F +  G    
Sbjct: 29  QDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 88

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
               AV TMK GE   +  KP+Y +G     ++G+   +PPNATL   +EL  +K   ++
Sbjct: 89  AWDIAVATMKVGELCRITCKPEYAYG-----SAGSPPKIPPNATLVFEVELFEFKG-EDL 142

Query: 267 TDDKK--VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE 324
           TDD+   +I++I   G+G+ RPN+GA+V+V L G  +D           +++   F+  E
Sbjct: 143 TDDEDGGIIRRIRTRGEGYARPNDGAIVEVALEGYYKDRLF--------DQRELRFEVGE 194

Query: 325 EQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            + +D   GL++A+  M+K E ++L + P YAFG+A   +E   +PP + + YEV L SF
Sbjct: 195 GESLDLPCGLEKAIQRMEKGEHSILYLKPSYAFGNA--GKEKFQIPPYAELKYEVHLKSF 252

Query: 382 EKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKK 441
           EK KESW+M++EEK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF  EE +
Sbjct: 253 EKAKESWEMSSEEKLEQSAIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSSEEVQ 312

Query: 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDG 489
           +A+AL++A +LN A C LKL+ +  A + C K  E       G+   G
Sbjct: 313 KAQALRLASHLNLAMCHLKLQAFSAAVESCNKALELDSNNEKGLFRRG 360

Immunophilin protein with PPIase and co-chaperone activities. Component of unligated steroid receptors heterocomplexes thought interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments. The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Oryctolagus cuniculus (taxid: 9986)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q7DMA9|PAS1_ARATH Peptidyl-prolyl cis-trans isomerase PASTICCINO1 OS=Arabidopsis thaliana GN=PAS1 PE=1 SV=2

 Score =  185 bits (470), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 142/477 (29%), Positives = 228/477 (47%), Gaps = 32/477 (6%)

Query: 32  KEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRD----RSTPFKFTL 87
           K+I    L K +V+ G G  +P +GD+V  H T   LDG   +S+R     R  P +  L
Sbjct: 27  KKIVPGSLLKAVVRPGGGDSSPVDGDQVIYHCTVRTLDGVVVESTRSESGGRGVPIRDVL 86

Query: 88  GQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNAT----LQFDVELLSW 143
           G   +I G   GI TM KGE A+F + PE+ Y E   P + P N      L F++ELL +
Sbjct: 87  GNSKMILGLLEGIPTMHKGEIAMFKMKPEMHYAEIDCPVSAPENFPKDDELHFEIELLDF 146

Query: 144 TSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVV--GKADGVEFTVKD 201
           +  K    D G+IKKIL EGE WE+P++  EV     A+  DG V+     +   FT   
Sbjct: 147 SKAKIASDDLGVIKKILNEGEGWESPREPYEVKARISAKSGDGHVIFSHTEEPYFFTFGK 206

Query: 202 GHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
                 L   + TM + EK ++ V+ QY       + S           +   +ELV + 
Sbjct: 207 SEVPKGLEIGIGTMARKEKAVIYVRKQY------LTESPLLHIDQDLEEVHFEVELVHFI 260

Query: 262 TVSEITDDKKVIKKILKEGDG---FERPNEGAVVKVKLIGKL--QDGTVFVKKGHSEEEQ 316
            V ++  D ++IK+ +++G G    + P + + + V   G L  ++ TVF        +Q
Sbjct: 261 QVRDMLGDGRLIKRRIRDGRGEFPMDCPLQDSRLSVHYKGMLLNEEKTVFYDSKIDNNDQ 320

Query: 317 LFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPN----STV 372
             EF + E  V +G +     M   E+AL+T  P+YA+            PP     + V
Sbjct: 321 PLEFSSGEGLVPEGFEMCTRLMLPGEIALVTCPPDYAYDKFPR-------PPGVSEGAHV 373

Query: 373 HYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD 432
            +E+EL+ FE  ++   +N +  ++ A K +  GN LFK GK+  A  +YEK ++   + 
Sbjct: 374 QWEIELLGFETPRDWTGLNFQSIMDEADKIRSTGNRLFKEGKFELAKAKYEKVLREFNHV 433

Query: 433 TSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDG 489
               ++E K     +   +LN AAC LK+ +++++ + C K  E+      G++  G
Sbjct: 434 NPQDEDEGKIFGDTRNMLHLNVAACLLKMGEWRKSIETCNKVLEAKPGHVKGLYRRG 490

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Essential protein regulating cell division, adhesion and elongation throughout the plant development and embryogenesis. Required for the spatial organization of apical meristems. Involved in the hormonal control of cell division and differentiation mediated by cytokinins and auxin. Regulates the function of NAC089 transcription factor by controlling its targeting to the nucleus upon plant cell division. Interacts with enzymes of the fatty acid elongase complex and favors the generation of very-long-chain fatty acids (VLCFAs) required for polar auxin transport and tissue patterning during plant development.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XSI2|FKBP5_SAGOE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Saguinus oedipus GN=FKBP5 PE=2 SV=2

 Score =  180 bits (457), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/278 (40%), Positives = 160/278 (57%), Gaps = 28/278 (10%)

Query: 36  NQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKG 95
           ++G+ K + + G G +TP  GD+V VHY G L +G +FDSS DR+ PF F++G+G VIK 
Sbjct: 30  DRGVLKIVKRVGHGEETPMIGDKVYVHYNGKLSNGKKFDSSHDRNEPFVFSIGKGQVIKA 89

Query: 96  WDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGI 155
           WDIG+ TMKKGE       PE AYG +GS P IP NATL F+VELL++   +D+ +DGGI
Sbjct: 90  WDIGVSTMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLNFKG-EDLLEDGGI 148

Query: 156 IKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDG--HFCPT-LAKAV 212
           I++  + GE + NP +   V ++ E R   G  V     V FTV +G  H  P  + KA+
Sbjct: 149 IRRTKRRGEGYSNPNEGARVQIHLEGRC--GGRVFDCRDVAFTVGEGEDHDIPIGIDKAL 206

Query: 213 KTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKV 272
           + M++ E+ +L + P+YGFGE GK   G    + PNA L   + L S++   E       
Sbjct: 207 EKMQREEQCILHLGPRYGFGEAGKPKFG----IEPNAELIYEVTLKSFEKAKESW----- 257

Query: 273 IKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKG 310
                 E D  E+  + A+VK       ++GTV+ K G
Sbjct: 258 ------EMDTKEKLEQAAIVK-------EEGTVYFKGG 282

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Saguinus oedipus (taxid: 9490)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	496
359497288	571	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.953	0.828	0.864	0.0
255589766	574	peptidylprolyl isomerase, putative [Rici	0.953	0.824	0.852	0.0
224065421	575	predicted protein [Populus trichocarpa]	0.957	0.826	0.845	0.0
255587695	583	peptidylprolyl isomerase, putative [Rici	0.953	0.811	0.852	0.0
355329948	573	FK506-binding protein [Nicotiana tabacum	0.957	0.828	0.851	0.0
356527318	544	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.937	0.854	0.835	0.0
356567794	544	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.937	0.854	0.828	0.0
449463204	553	PREDICTED: peptidyl-prolyl cis-trans iso	0.959	0.860	0.827	0.0
297831424	551	peptidylprolyl isomerase [Arabidopsis ly	0.955	0.860	0.827	0.0
9294180	555	peptidylprolyl isomerase; FK506-binding	0.957	0.855	0.822	0.0

>gi|359497288|ref|XP_002263566.2| PREDICTED: 70 kDa peptidyl-prolyl isomerase [Vitis vinifera] gi|296085741|emb|CBI29552.3| unnamed protein product [Vitis vinifera]

 Score =  840 bits (2170), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/473 (86%), Positives = 440/473 (93%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
           MDEDFDIPAA EM+ DMDLPD++P++KVGEEKEIG QGLKKKLVKEGEGWDTPENGDEVE
Sbjct: 1   MDEDFDIPAAEEMNDDMDLPDESPILKVGEEKEIGKQGLKKKLVKEGEGWDTPENGDEVE 60

Query: 61  VHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYG 120
           VHYTGTLLDGTQFDSSRDR TPFKFTLGQG VIKGWD GIKTMKKGENA+FTIPPELAYG
Sbjct: 61  VHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDQGIKTMKKGENAIFTIPPELAYG 120

Query: 121 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYE 180
           ESGS  TIPPNATLQFDVELLSWTSVKDICKDGGI KKI+ EG+KWENPKDLDEV V YE
Sbjct: 121 ESGSSTTIPPNATLQFDVELLSWTSVKDICKDGGIFKKIVTEGDKWENPKDLDEVFVKYE 180

Query: 181 ARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASG 240
           ARLEDG +V K+DGVEFTVK+ +FCP L+KAVKTMKKGEKV+L VKPQYGFGEKGK ASG
Sbjct: 181 ARLEDGTLVAKSDGVEFTVKEDYFCPALSKAVKTMKKGEKVILTVKPQYGFGEKGKPASG 240

Query: 241 NEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKL 300
            EGAVPPNATL+I LELVSWKTV+E+TDDKKVIKKILKEG+G+ERPNEGAVVK+KLIGKL
Sbjct: 241 EEGAVPPNATLEITLELVSWKTVTEVTDDKKVIKKILKEGEGYERPNEGAVVKLKLIGKL 300

Query: 301 QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQ 360
           QDGTVF+KKGH E E LFEFKTD+EQVIDGLDRAV+TMKK EVALLTI  +YAFGS+ES 
Sbjct: 301 QDGTVFLKKGHGEGEDLFEFKTDDEQVIDGLDRAVMTMKKGEVALLTIHSDYAFGSSESS 360

Query: 361 QELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASK 420
           QELAVVPPNSTV+YEVEL SF K+KESWDMNTEEKIEAAGKKKE+GN LFKAGKYARASK
Sbjct: 361 QELAVVPPNSTVYYEVELESFVKDKESWDMNTEEKIEAAGKKKEEGNVLFKAGKYARASK 420

Query: 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473
           RYEKA KYIEYD+SFG+EEKKQAK LKV CNLNNAACKLKLKDYK+AEKLCTK
Sbjct: 421 RYEKAAKYIEYDSSFGEEEKKQAKTLKVTCNLNNAACKLKLKDYKEAEKLCTK 473

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255589766|ref|XP_002535081.1| peptidylprolyl isomerase, putative [Ricinus communis] gi|223524081|gb|EEF27302.1| peptidylprolyl isomerase, putative [Ricinus communis]

 Score =  834 bits (2154), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/475 (85%), Positives = 444/475 (93%), Gaps = 2/475 (0%)

Query: 1   MDEDFDIPAANEM--DADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDE 58
           M+EDFDIPA +EM  + D+DL D +P++KVGEEKEIG QGLKKKLVKEGEGWDTP+NGDE
Sbjct: 1   MEEDFDIPAGDEMMMNDDVDLGDQSPILKVGEEKEIGKQGLKKKLVKEGEGWDTPDNGDE 60

Query: 59  VEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
           VEVHYTGTLLDGTQFDSSRDR TPFKFTLGQG VIKGWD GIKTMKKGENA+FTIPPELA
Sbjct: 61  VEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDQGIKTMKKGENAIFTIPPELA 120

Query: 119 YGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVN 178
           YG SGSPPTIPPNATLQFDVELLSWTSVKDICKDGGI KKIL EGEKWENPKDLDEVLVN
Sbjct: 121 YGASGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKILVEGEKWENPKDLDEVLVN 180

Query: 179 YEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA 238
           +EA+LEDG VV K+DGVEF VK+GHFCP LAKAVKTMKK EKVLL VKPQYGFGEKGK A
Sbjct: 181 FEAQLEDGTVVAKSDGVEFAVKEGHFCPALAKAVKTMKKKEKVLLTVKPQYGFGEKGKPA 240

Query: 239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIG 298
           S  EGAVPPNATLQI LELVSWKTVSE+TDDKKV+KKILKEG+G+ERPN+G++VK+KLIG
Sbjct: 241 SNGEGAVPPNATLQITLELVSWKTVSEVTDDKKVMKKILKEGEGYERPNDGSLVKLKLIG 300

Query: 299 KLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358
           KLQDGTVF+KKGH  EE+LFEF TDEEQVI+GLDRAV+ MKK EVAL+TIAPEYAFG++E
Sbjct: 301 KLQDGTVFLKKGHDNEEELFEFTTDEEQVIEGLDRAVLAMKKGEVALVTIAPEYAFGASE 360

Query: 359 SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARA 418
           S+QELAV+PPNSTV+YEVELVSF KEKESWDMNT+EKIEAAGKKKE+GN LFKAGKYARA
Sbjct: 361 SKQELAVIPPNSTVYYEVELVSFVKEKESWDMNTQEKIEAAGKKKEEGNILFKAGKYARA 420

Query: 419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473
           SKRYEKAVK+IEYD+SF +EEKKQAKALKVACNLNNAACKL+LK+YK+AEKLCTK
Sbjct: 421 SKRYEKAVKHIEYDSSFSEEEKKQAKALKVACNLNNAACKLRLKEYKEAEKLCTK 475

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065421|ref|XP_002301809.1| predicted protein [Populus trichocarpa] gi|222843535|gb|EEE81082.1| predicted protein [Populus trichocarpa]

 Score =  833 bits (2153), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/480 (84%), Positives = 443/480 (92%), Gaps = 5/480 (1%)

Query: 1   MDEDFDIPAANEMDAD----MDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENG 56
           M+EDF++P  +EM  +    +DLPD+ PM+KVGEEKEIGNQGLKKKL+KEGEGWDTP+NG
Sbjct: 1   MEEDFELPTGDEMMMNNGDQLDLPDEGPMLKVGEEKEIGNQGLKKKLLKEGEGWDTPDNG 60

Query: 57  DEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPE 116
           DEVEVHYTGTLLDGTQFDSSRDR TPFKFTLGQG VIKGWD+GIKTMKKGENA+FTIP +
Sbjct: 61  DEVEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDLGIKTMKKGENALFTIPAD 120

Query: 117 LAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVL 176
           LAYG SGSPPTIPPNATLQFDVELLSW+S+KDICKDGGI KKIL EGEKWENPKDLDEVL
Sbjct: 121 LAYGSSGSPPTIPPNATLQFDVELLSWSSIKDICKDGGIFKKILVEGEKWENPKDLDEVL 180

Query: 177 VNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGK 236
           V YEA+LEDG V+ ++DGVEFTVKDGHFCP LA+AVKTMK GEKVLL VKPQYGFGEKGK
Sbjct: 181 VRYEAQLEDGSVIARSDGVEFTVKDGHFCPALARAVKTMKMGEKVLLTVKPQYGFGEKGK 240

Query: 237 SASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKL 296
            ASG+E AVPPNA +QI LELV+WKTV+E+TDDKKVIKKILKEGDG++RPNEGAVVKVKL
Sbjct: 241 PASGDESAVPPNANIQITLELVAWKTVTEVTDDKKVIKKILKEGDGYDRPNEGAVVKVKL 300

Query: 297 IGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGS 356
           IGKLQDGTVF KKG  + E LFEFKTDEEQVIDGLDRAV TMKK E+ALLTIAPEYAFGS
Sbjct: 301 IGKLQDGTVFFKKGQDDSE-LFEFKTDEEQVIDGLDRAVSTMKKGELALLTIAPEYAFGS 359

Query: 357 AESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYA 416
           +ESQQELAVVPPNSTV YE+ELVSF+KEKESWDMNT+EKIEAAGKKKE+GN LFKAGKYA
Sbjct: 360 SESQQELAVVPPNSTVCYEIELVSFDKEKESWDMNTDEKIEAAGKKKEEGNVLFKAGKYA 419

Query: 417 RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE 476
           +ASKRYEKAVKYIEYD+SF +EEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  E
Sbjct: 420 KASKRYEKAVKYIEYDSSFSEEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLE 479

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587695|ref|XP_002534361.1| peptidylprolyl isomerase, putative [Ricinus communis] gi|223525436|gb|EEF28026.1| peptidylprolyl isomerase, putative [Ricinus communis]

 Score =  830 bits (2144), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/475 (85%), Positives = 444/475 (93%), Gaps = 2/475 (0%)

Query: 1   MDEDFDIPAANEM--DADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDE 58
           M+EDFDIPA +EM  + D+DL D +P++KVGEEKEIG QGLKKKLVKEGEGWDTP+NGDE
Sbjct: 1   MEEDFDIPAGDEMMMNDDVDLGDQSPILKVGEEKEIGKQGLKKKLVKEGEGWDTPDNGDE 60

Query: 59  VEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
           VEVHYTGTLLDGTQFDSSRDR TPFKFTLGQG VIKGWD GIKTMKKGENA+FTIPPELA
Sbjct: 61  VEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDQGIKTMKKGENAIFTIPPELA 120

Query: 119 YGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVN 178
           YG SGSPPTIPPNATLQFDVELLSWTSVKDICKDGGI KKIL EGEKWENPKDLDEVLVN
Sbjct: 121 YGASGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKILVEGEKWENPKDLDEVLVN 180

Query: 179 YEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA 238
           +EA+LEDG VV K+DGVEF VK+GHFCP LAKAVKTMKK EKVLL VKPQYGFGEKGK A
Sbjct: 181 FEAQLEDGTVVAKSDGVEFAVKEGHFCPALAKAVKTMKKKEKVLLTVKPQYGFGEKGKPA 240

Query: 239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIG 298
           S  EGAVPPNATLQI LELVSWKTVSE+TDDKKV+KKILKEG+G+ERPN+G++VK+KLIG
Sbjct: 241 SNGEGAVPPNATLQITLELVSWKTVSEVTDDKKVMKKILKEGEGYERPNDGSLVKLKLIG 300

Query: 299 KLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358
           KLQDGTVF+KKGH  EE+LFEF TDEEQVI+GLDRAV+ MKK EVAL+TIAPEYAFG++E
Sbjct: 301 KLQDGTVFLKKGHDNEEELFEFTTDEEQVIEGLDRAVLAMKKGEVALVTIAPEYAFGASE 360

Query: 359 SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARA 418
           S+QELAV+PPNSTV+YEVELVSF KEKESWDMNT+EKIEAAGKKKE+GN LFKAGKYARA
Sbjct: 361 SKQELAVIPPNSTVYYEVELVSFVKEKESWDMNTQEKIEAAGKKKEEGNILFKAGKYARA 420

Query: 419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473
           SKRYEKAVK+IEYD+SF +EEKKQAKALKVACNLNNAACKL+LK+YK+AEKLCTK
Sbjct: 421 SKRYEKAVKHIEYDSSFSEEEKKQAKALKVACNLNNAACKLRLKEYKEAEKLCTK 475

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|355329948|dbj|BAL14273.1| FK506-binding protein [Nicotiana tabacum]

 Score =  827 bits (2136), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/478 (85%), Positives = 438/478 (91%), Gaps = 3/478 (0%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
           M+EDFDIP A  MD DMDLPDD P+MKVGEEKEIGNQGLKKKLVKEGEGW+TPE GDEVE
Sbjct: 1   MEEDFDIPPAEGMDEDMDLPDD-PIMKVGEEKEIGNQGLKKKLVKEGEGWETPEAGDEVE 59

Query: 61  VHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYG 120
           VHYTGTLLDGT+FDSSRDR  PFKFTLGQG VIKGWD GIKTMKKGENA+FTIPPELAYG
Sbjct: 60  VHYTGTLLDGTKFDSSRDRGDPFKFTLGQGQVIKGWDQGIKTMKKGENAIFTIPPELAYG 119

Query: 121 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYE 180
           ESGSPPTIPPNATLQFDVELLSW SVKDICKDGGI KKIL EGEKWENPKD DEVLV YE
Sbjct: 120 ESGSPPTIPPNATLQFDVELLSWVSVKDICKDGGIFKKILAEGEKWENPKDFDEVLVKYE 179

Query: 181 ARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASG 240
           A LE+G VVGK+DGVEFTV+DG+FCP LAKAVKTMKKGEKV L VKPQYGFGEKGK AS 
Sbjct: 180 ALLENGTVVGKSDGVEFTVQDGYFCPALAKAVKTMKKGEKVQLTVKPQYGFGEKGKPASS 239

Query: 241 NEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKL 300
           + GAVP NATLQI LELVSWK VS +TDDKKV+KKILKEG+G+E+PNEGAVVK+KLIGKL
Sbjct: 240 DGGAVPSNATLQINLELVSWKIVSSVTDDKKVVKKILKEGEGYEKPNEGAVVKLKLIGKL 299

Query: 301 QDGTVFVKKGHS--EEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358
           QDGTVF+KKGH    E++LFEFKTDEEQVIDGLDRAV+TMKK EVALLTIAPEYAFGS+E
Sbjct: 300 QDGTVFIKKGHDGENEDELFEFKTDEEQVIDGLDRAVMTMKKGEVALLTIAPEYAFGSSE 359

Query: 359 SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARA 418
           S+Q+LAV+PPNSTVHYEVELVSF K+KESWDMNT EKIEAAGKKKE+GN LFKAGKY RA
Sbjct: 360 SKQDLAVIPPNSTVHYEVELVSFVKDKESWDMNTPEKIEAAGKKKEEGNALFKAGKYTRA 419

Query: 419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE 476
           SKRYEKA K+IEYDTSF +EEKKQ+KALK++CNLNNAACKLKLKDYKQAEKLCTK  E
Sbjct: 420 SKRYEKAAKFIEYDTSFSEEEKKQSKALKISCNLNNAACKLKLKDYKQAEKLCTKVLE 477

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527318|ref|XP_003532258.1| PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Glycine max]

 Score =  812 bits (2097), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/473 (83%), Positives = 434/473 (91%), Gaps = 8/473 (1%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
           M+EDFDIP   EMD   D        KVGEE+EIG++GLKKKL+KEG+GW+TPE GDEV+
Sbjct: 1   MEEDFDIPGGEEMDLGED--------KVGEEREIGSRGLKKKLLKEGQGWETPEVGDEVQ 52

Query: 61  VHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYG 120
           VHYTGTLLDGT+FDSSRDR +PF FTLGQG VIKGWD GIKTMKKGENA+FTIPPELAYG
Sbjct: 53  VHYTGTLLDGTKFDSSRDRDSPFSFTLGQGQVIKGWDEGIKTMKKGENAIFTIPPELAYG 112

Query: 121 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYE 180
           ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGI KKI+ EG+KWENPKD DEVLV YE
Sbjct: 113 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKIVTEGDKWENPKDPDEVLVKYE 172

Query: 181 ARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASG 240
             LE+G +V K+DGVEFTV++GH+CP L+KAVKTMKKGEKVLL VKPQYGFGEKGK   G
Sbjct: 173 VHLENGKLVAKSDGVEFTVREGHYCPALSKAVKTMKKGEKVLLTVKPQYGFGEKGKPEQG 232

Query: 241 NEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKL 300
           +EGAVPPNATLQI LELVSWKTVSE+TDDKKVIKKILKEG+G+ERPNEGA+VKVKLIGKL
Sbjct: 233 DEGAVPPNATLQITLELVSWKTVSEVTDDKKVIKKILKEGEGYERPNEGAIVKVKLIGKL 292

Query: 301 QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQ 360
           QDG  F+KKGH EEE+LFEFKTDEEQV+DGLDRAV+TMKK EVALLTIAPEYAFGS+ESQ
Sbjct: 293 QDGAAFLKKGHDEEEKLFEFKTDEEQVVDGLDRAVLTMKKGEVALLTIAPEYAFGSSESQ 352

Query: 361 QELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASK 420
           QELAVVPPNSTV++EVELVSFEKEKESWD+NTEEK+EAAGKKKE+GN LFKAGK+ARASK
Sbjct: 353 QELAVVPPNSTVYFEVELVSFEKEKESWDLNTEEKLEAAGKKKEEGNVLFKAGKHARASK 412

Query: 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473
           RYEKAVKYIEYD+SFG+EEKKQAK LKVACNLNNAACKLKLKDYK+AEKLCTK
Sbjct: 413 RYEKAVKYIEYDSSFGEEEKKQAKTLKVACNLNNAACKLKLKDYKEAEKLCTK 465

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567794|ref|XP_003552100.1| PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Glycine max]

 Score =  806 bits (2082), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/473 (82%), Positives = 432/473 (91%), Gaps = 8/473 (1%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
           M+EDFDIP   EMD   D        +VGEE+EIG+ GLKKKL+KEG+GW+TPE GDEV+
Sbjct: 1   MEEDFDIPGGEEMDLGED--------EVGEEREIGSGGLKKKLLKEGQGWETPEVGDEVQ 52

Query: 61  VHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYG 120
           VHYTGTLLDGT+FDSSRDR +PF FTLGQG VIKGWD GIKTMKKGENA+FTIPPELAYG
Sbjct: 53  VHYTGTLLDGTKFDSSRDRDSPFSFTLGQGQVIKGWDEGIKTMKKGENAIFTIPPELAYG 112

Query: 121 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYE 180
           ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGI KKI+ EGEKWENPKD DEVLV YE
Sbjct: 113 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKIITEGEKWENPKDPDEVLVKYE 172

Query: 181 ARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASG 240
             LE+G ++ K+DG EFTV++GH+CP L+KAVKTMKKGEKVLL VKPQYGFGEKGK   G
Sbjct: 173 VHLENGKLLAKSDGEEFTVREGHYCPALSKAVKTMKKGEKVLLTVKPQYGFGEKGKPEQG 232

Query: 241 NEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKL 300
           +EGAVPPNATLQI LELVSWKTVSE+TDDKKVIKKILKEG+G+ERPNEGA+VKVKLIGKL
Sbjct: 233 DEGAVPPNATLQITLELVSWKTVSEVTDDKKVIKKILKEGEGYERPNEGAIVKVKLIGKL 292

Query: 301 QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQ 360
           QDGT F+KKGH EEE+LFEFKTDEEQV+DGLDRAV+TMKK EVALLTIAP+YAFG++ESQ
Sbjct: 293 QDGTAFLKKGHDEEEKLFEFKTDEEQVVDGLDRAVLTMKKGEVALLTIAPDYAFGTSESQ 352

Query: 361 QELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASK 420
           QELAVVPPNSTV++EVELVSFEKEKESWD+NTEEK+EAAGKKKE+GN LFKA KYARASK
Sbjct: 353 QELAVVPPNSTVYFEVELVSFEKEKESWDLNTEEKLEAAGKKKEEGNVLFKASKYARASK 412

Query: 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473
           RYEKAVKYIEYD+SFG+EEKKQAK LKVACNLNNAACKLKLKDYK+AEKLCTK
Sbjct: 413 RYEKAVKYIEYDSSFGEEEKKQAKTLKVACNLNNAACKLKLKDYKEAEKLCTK 465

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463204|ref|XP_004149324.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Cucumis sativus] gi|449515125|ref|XP_004164600.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Cucumis sativus]

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/476 (82%), Positives = 438/476 (92%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
           MDEDFDIPAA +M  D+DLPD    +KVGEEKEIGNQGLKKKL+KEGEGW TPE+GDEVE
Sbjct: 1   MDEDFDIPAAPDMPDDLDLPDQTVPLKVGEEKEIGNQGLKKKLLKEGEGWVTPESGDEVE 60

Query: 61  VHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYG 120
           VHYTGTLLDGTQFDSSRDR TPFKFTLGQG VIKGWD+GIKTMKK E A+FTIPP+LAYG
Sbjct: 61  VHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDLGIKTMKKNEKALFTIPPDLAYG 120

Query: 121 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYE 180
           ESGSPPTIPP+ATLQFDVELLSWTSVKDICKDGGI KKIL EG+KWENPKDLDEVLVN+E
Sbjct: 121 ESGSPPTIPPSATLQFDVELLSWTSVKDICKDGGIFKKILTEGDKWENPKDLDEVLVNFE 180

Query: 181 ARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASG 240
           A+LEDG ++ KADGVEFTV DG+FCP LAKAVKTMK GEK LL VKPQYGFGEKGKSA G
Sbjct: 181 AKLEDGTLIAKADGVEFTVADGYFCPALAKAVKTMKLGEKALLTVKPQYGFGEKGKSARG 240

Query: 241 NEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKL 300
           NEGAVPPNA+L I LELVSWKTVSE+T DKKVIKKILKEG+G+E+PN+GA+VKVKLIGKL
Sbjct: 241 NEGAVPPNASLDITLELVSWKTVSEVTPDKKVIKKILKEGEGYEKPNDGAIVKVKLIGKL 300

Query: 301 QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQ 360
            DG +F++KGH + E+ +EFKTDEEQVIDGLD+AV+TMKK E+ALLTIAPEYAFGS+ESQ
Sbjct: 301 GDGKIFLRKGHEDGEEPYEFKTDEEQVIDGLDKAVVTMKKGEIALLTIAPEYAFGSSESQ 360

Query: 361 QELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASK 420
           Q+LAVVPPNSTV+YEVELV+F+KEKESWDMN +EKIEAAGKKKE+GN LFK+GK+ARASK
Sbjct: 361 QDLAVVPPNSTVYYEVELVAFDKEKESWDMNNQEKIEAAGKKKEEGNVLFKSGKFARASK 420

Query: 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE 476
           RYEKAVK+IEYD+SF +EEKKQAKALKVACNLNNAACKLKLK Y +AEKLCTK  E
Sbjct: 421 RYEKAVKFIEYDSSFSEEEKKQAKALKVACNLNNAACKLKLKLYNEAEKLCTKVLE 476

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831424|ref|XP_002883594.1| peptidylprolyl isomerase [Arabidopsis lyrata subsp. lyrata] gi|297329434|gb|EFH59853.1| peptidylprolyl isomerase [Arabidopsis lyrata subsp. lyrata]

 Score =  796 bits (2056), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/476 (82%), Positives = 430/476 (90%), Gaps = 2/476 (0%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
           MD DF++P   + D +MD  D A  +KVGEEKEI  QGLKKKLVKEGEG++TPENGDEVE
Sbjct: 1   MDNDFEMPPVGD-DDEMDFGDAASFLKVGEEKEI-QQGLKKKLVKEGEGYETPENGDEVE 58

Query: 61  VHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYG 120
           VHYTGTLLDGT+FDSSRDR TPFKFTLGQG VIKGWDIGIKTMKKGENAVFTIP ELAYG
Sbjct: 59  VHYTGTLLDGTKFDSSRDRGTPFKFTLGQGQVIKGWDIGIKTMKKGENAVFTIPSELAYG 118

Query: 121 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYE 180
           E+GSPPTIP NATLQFDVELL+W SVKDICKDGG+ KKIL  GEKWENPKDLDEVLV +E
Sbjct: 119 ETGSPPTIPANATLQFDVELLTWVSVKDICKDGGVFKKILAVGEKWENPKDLDEVLVKFE 178

Query: 181 ARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASG 240
           A+LEDG VVGK+DGVEFTVKDGHFCP L KAVKTMKKGEKVLL VKPQYGFGEKGK AS 
Sbjct: 179 AKLEDGTVVGKSDGVEFTVKDGHFCPALTKAVKTMKKGEKVLLTVKPQYGFGEKGKPASA 238

Query: 241 NEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKL 300
            +GAVPPNATL+I LELVSWKTVSE+TDD KV+KKILKEG+G+ERPNEGA VKVKLIGKL
Sbjct: 239 GDGAVPPNATLEINLELVSWKTVSEVTDDNKVMKKILKEGEGYERPNEGAAVKVKLIGKL 298

Query: 301 QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQ 360
           QDGTVF+KKGH E E+ FEFKTDEEQV+DGLDRAV+ MKK EVAL+TI PEYAFGS ESQ
Sbjct: 299 QDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNESQ 358

Query: 361 QELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASK 420
           QELAVVPPNSTV YEV+L++F+KE+ESWDM+TEEKIEAA KKKE+GN+ FKAGKYA ASK
Sbjct: 359 QELAVVPPNSTVTYEVDLLTFDKERESWDMSTEEKIEAASKKKEEGNSKFKAGKYALASK 418

Query: 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE 476
           RYEKAVK+IEYDTSF +EEKKQAKALKVACNLN+AACKLKLKDYKQAEKLCTK  E
Sbjct: 419 RYEKAVKFIEYDTSFSEEEKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTKVLE 474

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9294180|dbj|BAB02082.1| peptidylprolyl isomerase; FK506-binding protein [Arabidopsis thaliana]

 Score =  785 bits (2028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/478 (82%), Positives = 429/478 (89%), Gaps = 3/478 (0%)

Query: 1   MDEDFDIPAANEMDADMDLPDD--APMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDE 58
           MD +F++P    M+ D D+     A  +KVGEEKEI  QGLKKKL+KEGEG++TPENGDE
Sbjct: 1   MDANFEMPPVGGMNDDDDMDFGDGASFLKVGEEKEI-QQGLKKKLLKEGEGYETPENGDE 59

Query: 59  VEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
           VEVHYTGTLLDGT+FDSSRDR+TPFKFTLGQG VIKGWDIGIKTMKKGENAVFTIP ELA
Sbjct: 60  VEVHYTGTLLDGTKFDSSRDRATPFKFTLGQGQVIKGWDIGIKTMKKGENAVFTIPAELA 119

Query: 119 YGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVN 178
           YGESGSPPTIP NATLQFDVELL W SVKDICKDGG+ KKIL  GEKWENPKDLDEVLV 
Sbjct: 120 YGESGSPPTIPANATLQFDVELLKWDSVKDICKDGGVFKKILAVGEKWENPKDLDEVLVK 179

Query: 179 YEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA 238
           +EA+LEDG VVGK+DGVEFTVKDGHFCP L KAVKTMKKGEKVLL VKPQYGFGEKGK A
Sbjct: 180 FEAKLEDGTVVGKSDGVEFTVKDGHFCPALTKAVKTMKKGEKVLLTVKPQYGFGEKGKPA 239

Query: 239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIG 298
           S  EGAVPPNATL+I LELVSWKTVSE+TDD KV+KK+LKEGDG+ERPNEGAVVKVKLIG
Sbjct: 240 SAGEGAVPPNATLEINLELVSWKTVSEVTDDNKVVKKVLKEGDGYERPNEGAVVKVKLIG 299

Query: 299 KLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358
           KLQDGTVF+KKGH E E+ FEFKTDEEQV+DGLDRAV+ MKK EVAL+TI PEYAFGS E
Sbjct: 300 KLQDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNE 359

Query: 359 SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARA 418
           SQQELAVVPPNSTV YEV+L++F+KE+ESWDMNTEEKIEAA KKKE+GN+ FK GKY+ A
Sbjct: 360 SQQELAVVPPNSTVTYEVDLLTFDKERESWDMNTEEKIEAASKKKEEGNSKFKGGKYSLA 419

Query: 419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE 476
           SKRYEKAVK+IEYDTSF +EEKKQAKALKVACNLN+AACKLKLKDYKQAEKLCTK  E
Sbjct: 420 SKRYEKAVKFIEYDTSFSEEEKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTKVLE 477

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	496
TAIR|locus:2090265	562	ROF1 "AT3G25230" [Arabidopsis	0.957	0.845	0.736	3.5e-185
TAIR|locus:2152561	578	ROF2 "AT5G48570" [Arabidopsis	0.907	0.778	0.734	5e-179
UNIPROTKB|Q7F1F2	580	OJ1191_A10.119 "cDNA clone:J03	0.925	0.791	0.715	3.6e-176
UNIPROTKB|Q9XFE4	585	OSJNBa0091C07.4 "OSJNBa0091C07	0.905	0.767	0.705	2.7e-171
UNIPROTKB|Q6K5Q1	682	P0579G08.8 "Putative peptidylp	0.905	0.658	0.658	1.7e-162
UNIPROTKB|Q657L6	422	P0468H06.14-3 "Peptidyl-prolyl	0.645	0.758	0.457	3.3e-70
UNIPROTKB|A8J0I6	569	FKB62 "Peptidyl-prolyl cis-tra	0.552	0.481	0.434	1.2e-67
UNIPROTKB|F1NIM4	442	FKBP4 "Uncharacterized protein	0.608	0.683	0.372	9.8e-48
UNIPROTKB|F1NP08	464	FKBP4 "Uncharacterized protein	0.608	0.650	0.372	9.8e-48
UNIPROTKB|P27124	458	FKBP4 "Peptidyl-prolyl cis-tra	0.604	0.655	0.360	5.6e-45

TAIR|locus:2090265 ROF1 "AT3G25230" [Arabidopsis thaliana (taxid:3702)]

 Score = 1796 (637.3 bits), Expect = 3.5e-185, P = 3.5e-185
 Identities = 352/478 (73%), Positives = 383/478 (80%)

Query:     1 MDEDFDIPAAN--EXXXXXXXXXXXXXXKVGEEKEIGNQXXXXXXXXXXXXWDTPENGDE 58
             MD +F++P                    KVGEEKEI  Q            ++TPENGDE
Sbjct:     1 MDANFEMPPVGGMNDDDDMDFGDGASFLKVGEEKEI-QQGLKKKLLKEGEGYETPENGDE 59

Query:    59 VEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
             VEVHYTGTLLDGT+FDSSRDR+TPFKFTLGQG VIKGWDIGIKTMKKGENAVFTIP ELA
Sbjct:    60 VEVHYTGTLLDGTKFDSSRDRATPFKFTLGQGQVIKGWDIGIKTMKKGENAVFTIPAELA 119

Query:   119 YGESGSPPTIPPNATLQFDVELLSWTSVXXXXXXXXXXXXXXXXXXXWENPKDLDEVLVN 178
             YGESGSPPTIP NATLQFDVELL W SV                   WENPKDLDEVLV 
Sbjct:   120 YGESGSPPTIPANATLQFDVELLKWDSVKDICKDGGVFKKILAVGEKWENPKDLDEVLVK 179

Query:   179 YEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA 238
             +EA+LEDG VVGK+DGVEFTVKDGHFCP L KAVKTMKKGEKVLL VKPQYGFGEKGK A
Sbjct:   180 FEAKLEDGTVVGKSDGVEFTVKDGHFCPALTKAVKTMKKGEKVLLTVKPQYGFGEKGKPA 239

Query:   239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIG 298
             S  EGAVPPNATL+I LELVSWKTVSE+TDD KV+KK+LKEGDG+ERPNEGAVVKVKLIG
Sbjct:   240 SAGEGAVPPNATLEINLELVSWKTVSEVTDDNKVVKKVLKEGDGYERPNEGAVVKVKLIG 299

Query:   299 KLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358
             KLQDGTVF+KKGH E E+ FEFKTDEEQV+DGLDRAV+ MKK EVAL+TI PEYAFGS E
Sbjct:   300 KLQDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNE 359

Query:   359 SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXXXXXXXQGNTLFKAGKYARA 418
             SQQELAVVPPNSTV YEV+L++F+KE+ESWDMNT            +GN+ FK GKY+ A
Sbjct:   360 SQQELAVVPPNSTVTYEVDLLTFDKERESWDMNTEEKIEAASKKKEEGNSKFKGGKYSLA 419

Query:   419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE 476
             SKRYEKAVK+IEYDTSF +EEKKQAKALKVACNLN+AACKLKLKDYKQAEKLCTK  E
Sbjct:   420 SKRYEKAVKFIEYDTSFSEEEKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTKVLE 477

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0009408 "response to heat" evidence=RCA;IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IDA

GO:0071944 "cell periphery" evidence=IDA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2152561 ROF2 "AT5G48570" [Arabidopsis thaliana (taxid:3702)]

 Score = 1738 (616.9 bits), Expect = 5.0e-179, P = 5.0e-179
 Identities = 332/452 (73%), Positives = 376/452 (83%)

Query:    27 KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
             K+GEE EIG              WDTPENGDEVEVHYTGTLLDGT+FDSSRDR TPFKFT
Sbjct:    36 KIGEEMEIGKSGLKKKLVKECEKWDTPENGDEVEVHYTGTLLDGTKFDSSRDRGTPFKFT 95

Query:    87 LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
             LGQG+VIKGWD+GIKTMKKGENA+FTIPPELAYGE+GSPPTIPPNATLQFDVEL++W SV
Sbjct:    96 LGQGHVIKGWDLGIKTMKKGENAIFTIPPELAYGETGSPPTIPPNATLQFDVELIAWRSV 155

Query:   147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
                                WE PKDLDEV V YEARLEDG +VGK+DGVEFTVK+GHFCP
Sbjct:   156 KDICGDGGVSKKIIVEGEKWEKPKDLDEVYVKYEARLEDGTIVGKSDGVEFTVKEGHFCP 215

Query:   207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSAS-GNEGAVPPNATLQIALELVSWKTVSE 265
              L+KAVKTMK+GEKVLL VKPQYGFGE G+ AS G + A+PPNATLQI LELVSWKTV E
Sbjct:   216 ALSKAVKTMKRGEKVLLTVKPQYGFGEFGRPASDGLQAAIPPNATLQIDLELVSWKTVVE 275

Query:   266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGT-VFVKKGHSEEEQLFEFKTDE 324
             +TDD+KVIKKILKEG+G+ERPNEGA+VK+KLIGKLQDGT VFVKKGH E+E+ FEFK DE
Sbjct:   276 VTDDRKVIKKILKEGEGYERPNEGAIVKLKLIGKLQDGTTVFVKKGHEEDEEPFEFKIDE 335

Query:   325 EQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
             EQVI+GL++AV+ MKK EVAL+TI+PEYAFGS+ES+QELAV+PPNSTV+YEVELVSF KE
Sbjct:   336 EQVIEGLEKAVMGMKKGEVALITISPEYAFGSSESKQELAVIPPNSTVYYEVELVSFIKE 395

Query:   385 KESWDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAK 444
             KESWDMNT            +GN LFKAGKYARASKRYE+ VKYIEYD++F +EEKK++K
Sbjct:   396 KESWDMNTQERIEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEYDSTFDEEEKKKSK 455

Query:   445 ALKVACNLNNAACKLKLKDYKQAEKLCTKKCE 476
              LK+ACNLN+AACKLKLKDYK+A KL TK  E
Sbjct:   456 DLKIACNLNDAACKLKLKDYKEAAKLSTKVLE 487

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;RCA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

UNIPROTKB|Q7F1F2 OJ1191_A10.119 "cDNA clone:J033121G16, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1711 (607.4 bits), Expect = 3.6e-176, P = 3.6e-176
 Identities = 329/460 (71%), Positives = 363/460 (78%)

Query:    27 KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
             KVGEEKEIG Q            W+TPE GDEVEVHYTGTLLDG +FDSSRDR TPFKF 
Sbjct:    35 KVGEEKEIGKQGLRKKLLKEGEGWETPEVGDEVEVHYTGTLLDGKKFDSSRDRGTPFKFK 94

Query:    87 LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
             LGQG VIKGWD+GIKTMKKGENAVFTIPP+LAYGESGSPPTIP +ATLQFDVELLSWTSV
Sbjct:    95 LGQGQVIKGWDLGIKTMKKGENAVFTIPPDLAYGESGSPPTIPASATLQFDVELLSWTSV 154

Query:   147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
                                WENPKDLDEV V YEARLEDG V+ K++G EFTVKDG FCP
Sbjct:   155 KDICQDGGIFKKILKEGEKWENPKDLDEVFVKYEARLEDGTVISKSEGAEFTVKDGFFCP 214

Query:   207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
              LAKAVKTMKK EKVLL VKPQYGFGE G+ A+G EGAVPPNATL + LELVSWKTV+EI
Sbjct:   215 ALAKAVKTMKKAEKVLLTVKPQYGFGENGRPAAGEEGAVPPNATLLVNLELVSWKTVTEI 274

Query:   267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
              DDKK++KK+L EG G+ERPNEGAVVKVK+ GKLQDGT+F KKGH E E  FEFKTDEE+
Sbjct:   275 GDDKKILKKVLTEGTGYERPNEGAVVKVKITGKLQDGTIFTKKGHDEPEP-FEFKTDEEE 333

Query:   327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
             VIDG+DRAV+ MK  EVAL+TI PEYAFGS ES+Q+LAVVPPNSTV YEVELVSF K+KE
Sbjct:   334 VIDGIDRAVLNMKNGEVALVTIPPEYAFGSTESKQDLAVVPPNSTVIYEVELVSFVKDKE 393

Query:   387 SWDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKAL 446
             SWD+N             +GN LFK GKY RASKRYEKA K+IEYD+SF ++EKKQ+K L
Sbjct:   394 SWDLNNTEKIETAGAKKEEGNALFKLGKYVRASKRYEKAAKFIEYDSSFSEDEKKQSKQL 453

Query:   447 KVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIH 486
             KV CNLNNAACKLKLKDYKQAEKLCTK  E   Q    ++
Sbjct:   454 KVTCNLNNAACKLKLKDYKQAEKLCTKVLELDSQNVKALY 493

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q9XFE4 OSJNBa0091C07.4 "OSJNBa0091C07.4 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1665 (591.2 bits), Expect = 2.7e-171, P = 2.7e-171
 Identities = 318/451 (70%), Positives = 364/451 (80%)

Query:    27 KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
             KVGEEKEIG Q            WD PE+GDEV+VHYTGTLLDGT+FDSSRDR TPFKF+
Sbjct:    39 KVGEEKEIGKQGLRKRLLKEGEGWDRPESGDEVQVHYTGTLLDGTKFDSSRDRGTPFKFS 98

Query:    87 LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
             LGQG VIKGWD GIKTMKKGE AVFT+PPELAYGE+GSPP IPPNATL+FDVELLSW SV
Sbjct:    99 LGQGEVIKGWDEGIKTMKKGEQAVFTVPPELAYGEAGSPPAIPPNATLRFDVELLSWASV 158

Query:   147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
                                WENPKDLDEVLV YEARLEDG VV K+DGVEF VKDG+FCP
Sbjct:   159 KDICKDGGIFKKVLAEGHKWENPKDLDEVLVKYEARLEDGTVVSKSDGVEFAVKDGYFCP 218

Query:   207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
              L+KAVKTMKKGEKVLL VKPQYGFGE+GK ASG E AVPPNATL + LEL+SWKTV+ I
Sbjct:   219 ALSKAVKTMKKGEKVLLTVKPQYGFGEQGKPASGAEAAVPPNATLYVDLELLSWKTVTLI 278

Query:   267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
              DDK+++KK+LKEG+G+ERPN+GAVV+V+ IGKL+DGTVF KKGH  +E  FEF+TDEEQ
Sbjct:   279 GDDKRILKKVLKEGEGYERPNDGAVVRVRFIGKLEDGTVFSKKGHDGDEP-FEFRTDEEQ 337

Query:   327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
             VI+GLDR V+TMKK EVAL+ + P++AFGS E++Q+LAVVP NSTV YEVELVSFEKEKE
Sbjct:   338 VIEGLDRTVVTMKKGEVALVRLPPQHAFGSTETKQDLAVVPANSTVWYEVELVSFEKEKE 397

Query:   387 SWDM-NTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKA 445
             SWD+ +             +GN  FK GKYA+ASKRYEKA KYIEYD+SF D+EKKQ+KA
Sbjct:   398 SWDLKDNAEKIEAAAKKKDEGNVWFKMGKYAKASKRYEKAAKYIEYDSSFTDDEKKQSKA 457

Query:   446 LKVACNLNNAACKLKLKDYKQAEKLCTKKCE 476
             LKV+C LNNAACKLKLK+Y++AEKLCTK  E
Sbjct:   458 LKVSCKLNNAACKLKLKEYREAEKLCTKVLE 488

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q6K5Q1 P0579G08.8 "Putative peptidylprolyl isomerase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1582 (562.0 bits), Expect = 1.7e-162, P = 1.7e-162
 Identities = 297/451 (65%), Positives = 356/451 (78%)

Query:    27 KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
             +VGEEKEIG +            W+ P+ GDEV+VHYTGTLLDGT+FDSSRDR  PFKFT
Sbjct:    84 EVGEEKEIGKEGLRKKLVKEGEGWERPDAGDEVQVHYTGTLLDGTKFDSSRDRDAPFKFT 143

Query:    87 LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
             LGQG VIKGWD+GIKTMKKGENA+FTIPPELAYGE GSPP IPPNATLQFDVEL+SW SV
Sbjct:   144 LGQGQVIKGWDLGIKTMKKGENAIFTIPPELAYGEDGSPPVIPPNATLQFDVELISWESV 203

Query:   147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
                                WENP+D DEV V YE RLEDG VV ++DGVEFTVKDGHFCP
Sbjct:   204 KDICKDGGILKKVLAEGTKWENPRDRDEVFVKYEVRLEDGTVVAESDGVEFTVKDGHFCP 263

Query:   207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
              ++KAVKTMKK EK LL VKPQYGFGE+G+ A+ +E A+PPNATL I LELVSWK V+EI
Sbjct:   264 AISKAVKTMKKNEKALLTVKPQYGFGEQGRPAARDEAAIPPNATLHINLELVSWKAVTEI 323

Query:   267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
              +DKK++KKIL EG+G+ERP++  +V+VKLIGKL+DGT+FV +GH  +E  FEFKTDE+Q
Sbjct:   324 GNDKKILKKILHEGEGYERPSDCTLVRVKLIGKLEDGTIFVTRGHDGDEP-FEFKTDEDQ 382

Query:   327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
             V++GLD+AV++MKK EVAL+TI PEYAFGS E++Q+L+VVPPNSTV+YEVELVSF+KEKE
Sbjct:   383 VVEGLDKAVLSMKKGEVALVTIPPEYAFGSDETRQDLSVVPPNSTVYYEVELVSFDKEKE 442

Query:   387 SWDMN-TXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKA 445
             SWDM               +GN  FK  KYARASKRY KA+ +I+YD+SF +EEK+ +K 
Sbjct:   443 SWDMKENTEKIEAAAKKKDEGNAWFKMEKYARASKRYGKALNFIQYDSSFSEEEKQLSKP 502

Query:   446 LKVACNLNNAACKLKLKDYKQAEKLCTKKCE 476
             LKV+C LNNAACKLKLKDYK+A++LCT+  E
Sbjct:   503 LKVSCKLNNAACKLKLKDYKEAKELCTEVLE 533

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q657L6 P0468H06.14-3 "Peptidyl-prolyl cis-trans isomerase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
 Identities = 151/330 (45%), Positives = 216/330 (65%)

Query:    58 EVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL 117
             EV+VH+TG L+DGTQF SSR+   P +F LGQ +V+ G+++ + +M+ GE A+FTIP  L
Sbjct:    75 EVQVHFTGELVDGTQFVSSRENDIPERFILGQEDVMHGFNLAVSSMQPGEKAIFTIPSAL 134

Query:   118 AYGESGSP---PT-IPPNATLQFDVELLS-WTSVXXXXXXXXXXXXXXXXXXXWENPKDL 172
                ++GSP   P+ IPPN TL+F++EL++ +T +                    +     
Sbjct:   135 TMTKAGSPASIPSNIPPNQTLRFEIELIAMFTIIDIFKDEGILKKIVKNAEPDRKQSHSS 194

Query:   173 DEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFG 232
             D V V Y+A L DG  V K++GVEF++ DG FCP  A AV TMK+GE+ +L VKP+Y FG
Sbjct:   195 DFVFVKYDACLMDGTSVSKSEGVEFSLTDGFFCPAFAHAVHTMKEGEEAVLIVKPKYAFG 254

Query:   233 EKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEG-AV 291
             E+G+ + G E AVPP+ATL + L  V W  +  I +D+ + KK L+ G+      +  AV
Sbjct:   255 EQGRPSQGEEAAVPPDATLYVHLLFVCW--IRRIGEDQAIAKKTLRIGNSQRIHTQSQAV 312

Query:   292 VKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPE 351
             VKV+L+GKLQDGTVF ++G+ ++E  FEF  DE QVIDGLD +V+TM++ EVA  TI P+
Sbjct:   313 VKVRLLGKLQDGTVFDRRGYGDDEP-FEFVVDEGQVIDGLDESVMTMEEGEVAEFTIPPQ 371

Query:   352 YAFGSAESQQ-ELAVVPPNSTVHYEVELVS 380
             +AF +  S Q + A VP N+TV Y++EL+S
Sbjct:   372 HAFDAVGSDQHQFAFVPRNATVVYKIELLS 401

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|A8J0I6 FKB62 "Peptidyl-prolyl cis-trans isomerase, FKBP-type" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 535 (193.4 bits), Expect = 1.2e-67, Sum P(2) = 1.2e-67
 Identities = 125/288 (43%), Positives = 165/288 (57%)

Query:   192 ADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATL 251
             A+ V FTV +G   P +  AVKTMK+GE+V L VKP+YGFG  G S  G    VPP A L
Sbjct:   171 AEAVTFTVSEGLLVPAVRVAVKTMKRGERVQLKVKPEYGFGAAGSSEYG----VPPGADL 226

Query:   252 QIALELVSWKTVSEITDDKKVIKKILKEGDG-FERPNEGAVVKVKLIGK-LQDGTVFVKK 309
             +I L L+ W  V    ++  V+KK L E D  + RPNEGA V +++ GK L DG VF+K 
Sbjct:   227 EIELTLLGWNNVEYCNNENTVVKKTLVECDNEYRRPNEGASVTLRVTGKVLPDGPVFMKH 286

Query:   310 GHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIA-PEYAFGSAE---SQQELAV 365
             G   E     F T+EEQV +GL+ AV+ MKK E A++T+  P Y +G      S +   V
Sbjct:   287 GEGSE---LRFVTEEEQVPEGLELAVMKMKKGETAVVTVNDPAYGYGDKPRTVSVEGSEV 343

Query:   366 -VPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEK 424
              VP  S + +EV+LV F   KE+W+M+             +GN  FK+GK ARA   +++
Sbjct:   344 EVPAGSRLQFEVDLVDFTNAKETWEMSDIEKAHAAKQRKDKGNAFFKSGKLARAQSCWDR 403

Query:   425 AVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472
             AV  + YD SF DE K   K +K +C LN AA  LK   +K A K CT
Sbjct:   404 AVAAVSYDKSFPDEAKAIGKEVKRSCWLNLAALDLKRAHWKDAVKHCT 451

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|F1NIM4 FKBP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 121/325 (37%), Positives = 187/325 (57%)

Query:   167 ENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
             E+P   D+V V+Y   L DG      + + D   F +  G        AV TMK GE   
Sbjct:    38 ESPMIGDKVTVHYTGWLLDGTKFDSSLDRRDKFSFDLGKGEVIKAWDIAVATMKVGEICQ 97

Query:   223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKK--VIKKILKEG 280
             +  KP+Y +G      +G+   +PPNATL   +EL  +K   ++TDD+   +I++I K+G
Sbjct:    98 ITCKPEYAYG-----LAGSPPKIPPNATLIFEIELFEFKG-EDLTDDEDGGIIRRIRKKG 151

Query:   281 DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEF-KTDEEQVIDGLDRAVITMK 339
             +G+ +PNEGA+V+++  G+ +D   F K+     E  FE  + D   +  GL++A+  M+
Sbjct:   152 EGYLKPNEGALVEIQFEGRYRD-RAFDKR-----ELRFEIGEGDNYDLPHGLEKAIQKME 205

Query:   340 KNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXX 399
             K+E ++  + P Y FGS  + +E   +PP++ + YEV+L SFEK KESW+MNT       
Sbjct:   206 KSEESIFYLKPNYGFGS--TGKEKFQIPPDAELQYEVKLKSFEKAKESWEMNTEEKLEQS 263

Query:   400 XXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKL 459
                  +G   FK GKY RA+ +Y+K V ++E+++   DEE  +AK+L++A +LN A C L
Sbjct:   264 CMVKERGTQYFKEGKYKRAALQYKKIVLWLEHESGLSDEEDTKAKSLRLAAHLNLAMCHL 323

Query:   460 KLKDYKQAEKLCTKKCE--SSVQKG 482
             KLK+Y QA + C K  E  SS +KG
Sbjct:   324 KLKEYSQALENCNKALELDSSNEKG 348

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1NP08 FKBP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 121/325 (37%), Positives = 187/325 (57%)

Query:   167 ENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
             E+P   D+V V+Y   L DG      + + D   F +  G        AV TMK GE   
Sbjct:    38 ESPMIGDKVTVHYTGWLLDGTKFDSSLDRRDKFSFDLGKGEVIKAWDIAVATMKVGEICQ 97

Query:   223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKK--VIKKILKEG 280
             +  KP+Y +G      +G+   +PPNATL   +EL  +K   ++TDD+   +I++I K+G
Sbjct:    98 ITCKPEYAYG-----LAGSPPKIPPNATLIFEIELFEFKG-EDLTDDEDGGIIRRIRKKG 151

Query:   281 DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEF-KTDEEQVIDGLDRAVITMK 339
             +G+ +PNEGA+V+++  G+ +D   F K+     E  FE  + D   +  GL++A+  M+
Sbjct:   152 EGYLKPNEGALVEIQFEGRYRD-RAFDKR-----ELRFEIGEGDNYDLPHGLEKAIQKME 205

Query:   340 KNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXX 399
             K+E ++  + P Y FGS  + +E   +PP++ + YEV+L SFEK KESW+MNT       
Sbjct:   206 KSEESIFYLKPNYGFGS--TGKEKFQIPPDAELQYEVKLKSFEKAKESWEMNTEEKLEQS 263

Query:   400 XXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKL 459
                  +G   FK GKY RA+ +Y+K V ++E+++   DEE  +AK+L++A +LN A C L
Sbjct:   264 CMVKERGTQYFKEGKYKRAALQYKKIVLWLEHESGLSDEEDTKAKSLRLAAHLNLAMCHL 323

Query:   460 KLKDYKQAEKLCTKKCE--SSVQKG 482
             KLK+Y QA + C K  E  SS +KG
Sbjct:   324 KLKEYSQALENCNKALELDSSNEKG 348

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006463 "steroid hormone receptor complex assembly" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0030850 "prostate gland development" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0031503 "protein complex localization" evidence=IEA

GO:0035259 "glucocorticoid receptor binding" evidence=IEA

GO:0046661 "male sex differentiation" evidence=IEA

GO:0051219 "phosphoprotein binding" evidence=IEA

UNIPROTKB|P27124 FKBP4 "Peptidyl-prolyl cis-trans isomerase FKBP4" [Oryctolagus cuniculus (taxid:9986)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 118/327 (36%), Positives = 184/327 (56%)

Query:   167 ENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
             E P   D V V+Y   L DG      + + D   F +  G        AV TMK GE   
Sbjct:    45 ETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGELCR 104

Query:   223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKK--VIKKILKEG 280
             +  KP+Y +G     ++G+   +PPNATL   +EL  +K   ++TDD+   +I++I   G
Sbjct:   105 ITCKPEYAYG-----SAGSPPKIPPNATLVFEVELFEFKG-EDLTDDEDGGIIRRIRTRG 158

Query:   281 DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID---GLDRAVIT 337
             +G+ RPN+GA+V+V L G  +D  +F      ++ +L  F+  E + +D   GL++A+  
Sbjct:   159 EGYARPNDGAIVEVALEGYYKD-RLF------DQREL-RFEVGEGESLDLPCGLEKAIQR 210

Query:   338 MKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXX 397
             M+K E ++L + P YAFG+A   +E   +PP + + YEV L SFEK KESW+M++     
Sbjct:   211 MEKGEHSILYLKPSYAFGNAG--KEKFQIPPYAELKYEVHLKSFEKAKESWEMSSEEKLE 268

Query:   398 XXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAAC 457
                    +G   FK GKY +A  +Y+K V ++EY++SF  EE ++A+AL++A +LN A C
Sbjct:   269 QSAIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSSEEVQKAQALRLASHLNLAMC 328

Query:   458 KLKLKDYKQAEKLCTKKCE--SSVQKG 482
              LKL+ +  A + C K  E  S+ +KG
Sbjct:   329 HLKLQAFSAAVESCNKALELDSNNEKG 355

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=ISS

GO:0010977 "negative regulation of neuron projection development" evidence=IDA

GO:0031111 "negative regulation of microtubule polymerization or depolymerization" evidence=IDA

GO:0044295 "axonal growth cone" evidence=ISS

GO:0048156 "tau protein binding" evidence=IPI

GO:0061077 "chaperone-mediated protein folding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q43207	FKB70_WHEAT	5, ., 2, ., 1, ., 8	0.7833	0.9556	0.8479	N/A	no
Q38931	FKB62_ARATH	5, ., 2, ., 1, ., 8	0.8221	0.9576	0.8620	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.983
4th Layer	5.2.1.8	0.979

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00011129001 SubName- Full=Chromosome undetermined scaffold_2180, whole genome shotgun sequence; (571 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	496
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	2e-41
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	2e-40
PRK10902	269	PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-	1e-23
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	4e-23
PRK11570	206	PRK11570, PRK11570, peptidyl-prolyl cis-trans isom	1e-22
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	2e-16
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	1e-14
COG1047	174	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans	4e-13
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	4e-09
TIGR03516	177	TIGR03516, ppisom_GldI, peptidyl-prolyl isomerase,	8e-09
PRK15095	156	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-	2e-06
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-05
COG1047	174	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans	6e-05
COG1047	174	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans	3e-04
PRK10902	269	PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-	4e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	6e-04
PRK11570	206	PRK11570, PRK11570, peptidyl-prolyl cis-trans isom	0.002
PRK11570	206	PRK11570, PRK11570, peptidyl-prolyl cis-trans isom	0.003

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score =  142 bits (361), Expect = 2e-41
 Identities = 59/94 (62%), Positives = 65/94 (69%), Gaps = 1/94 (1%)

Query: 49  GWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGEN 108
           G +  + GD V VHYTG L DGT FDSS+DR  PF+FTLG G VI GWD G+  MK GE 
Sbjct: 1   GPEKAKKGDTVTVHYTGKLEDGTVFDSSKDRGKPFEFTLGSGQVIPGWDEGLLGMKVGEK 60

Query: 109 AVFTIPPELAYGESGS-PPTIPPNATLQFDVELL 141
              TIPPELAYGE G     IPPNATL F+VELL
Sbjct: 61  RKLTIPPELAYGEEGLAGGVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score =  144 bits (364), Expect = 2e-40
 Identities = 62/105 (59%), Positives = 73/105 (69%), Gaps = 3/105 (2%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL+ K++K G+G   P+ GD V VHYTGTL+DGT FDSS DR  P +F LG   VI GWD
Sbjct: 102 GLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLGG--VIPGWD 158

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
            G++ MK G     TIPPELAYGE G P  IPPN+TL F+VELL 
Sbjct: 159 EGLQGMKVGGKRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLD 203

Length = 205

>gnl|CDD|236791 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 99.8 bits (249), Expect = 1e-23
 Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 4/105 (3%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL  K+ KEG G + P++ D V V+Y GTL+DG +FD+S  R  P  F L    VI GW 
Sbjct: 147 GLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWT 203

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
            G+K +KKG      IPPELAYG++G  P IP N+TL FDVELL 
Sbjct: 204 EGLKNIKKGGKIKLVIPPELAYGKAGV-PGIPANSTLVFDVELLD 247

Length = 269

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 93.1 bits (232), Expect = 4e-23
 Identities = 39/96 (40%), Positives = 51/96 (53%), Gaps = 4/96 (4%)

Query: 284 ERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEV 343
           E+  +G  V V   GKL+DGTVF         + FEF     QVI G D  ++ MK  E 
Sbjct: 3   EKAKKGDTVTVHYTGKLEDGTVFDSSKD--RGKPFEFTLGSGQVIPGWDEGLLGMKVGEK 60

Query: 344 ALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
             LTI PE A+G         V+PPN+T+ +EVEL+
Sbjct: 61  RKLTIPPELAYGEEGLAG--GVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|183207 PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 95.6 bits (238), Expect = 1e-22
 Identities = 50/104 (48%), Positives = 63/104 (60%), Gaps = 3/104 (2%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL+ +++ +GEG   P   D V VHYTG L+DGT FDSS  R  P +F +    VI GW 
Sbjct: 103 GLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWI 159

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELL 141
             +  M  G     TIP ELAYGE G+  +IPP +TL F+VELL
Sbjct: 160 EALTLMPVGSKWELTIPHELAYGERGAGASIPPFSTLVFEVELL 203

Length = 206

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 74.2 bits (183), Expect = 2e-16
 Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 8/98 (8%)

Query: 165 KWENPKDLDEVLVNYEARLEDGMVV----GKADGVEFTVKDGHFCPTLAKAVKTMKKGEK 220
             E  K  D V V+Y  +LEDG V      +    EFT+  G   P   + +  MK GEK
Sbjct: 1   GPEKAKKGDTVTVHYTGKLEDGTVFDSSKDRGKPFEFTLGSGQVIPGWDEGLLGMKVGEK 60

Query: 221 VLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
             L + P+  +GE+G       G +PPNATL   +EL+
Sbjct: 61  RKLTIPPELAYGEEGL----AGGVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 72.4 bits (178), Expect = 1e-14
 Identities = 44/114 (38%), Positives = 55/114 (48%), Gaps = 14/114 (12%)

Query: 271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQV 327
            +  K+LK GDG   P +G  V V   G L DGTVF     +G     Q  EF      V
Sbjct: 102 GLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRG-----QPAEFPLG--GV 153

Query: 328 IDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
           I G D  +  MK      LTI PE A+G    +    V+PPNST+ +EVEL+  
Sbjct: 154 IPGWDEGLQGMKVGGKRKLTIPPELAYG---ERGVPGVIPPNSTLVFEVELLDV 204

Length = 205

>gnl|CDD|223976 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

 Score = 67.3 bits (165), Expect = 4e-13
 Identities = 25/68 (36%), Positives = 36/68 (52%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
           E GD V +HYT  + DG   D++ +   P  F +G G +I G +  +   + GE     I
Sbjct: 4   EKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEI 63

Query: 114 PPELAYGE 121
           PPE A+GE
Sbjct: 64  PPEDAFGE 71

Length = 174

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 56.3 bits (136), Expect = 4e-09
 Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 8/109 (7%)

Query: 153 GGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVV--GKADGVEFTVKDGHFCPTLAK 210
            G+  K+LK G+    PK  D V V+Y   L DG V       G       G   P   +
Sbjct: 101 SGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLGGVIPGWDE 159

Query: 211 AVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
            ++ MK G K  L + P+  +GE+G       G +PPN+TL   +EL+ 
Sbjct: 160 GLQGMKVGGKRKLTIPPELAYGERGVP-----GVIPPNSTLVFEVELLD 203

Length = 205

>gnl|CDD|132555 TIGR03516, ppisom_GldI, peptidyl-prolyl isomerase, gliding motility-associated

 Score = 54.8 bits (132), Expect = 8e-09
 Identities = 33/91 (36%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 52  TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVF 111
           TPE GD V   Y    LDG    S  +   P  + + Q ++  G   G+K MK+GE A F
Sbjct: 85  TPEFGDLVTFEYDIRALDGDVIYSEEELG-PQTYKVDQQDLFSGLRDGLKLMKEGETATF 143

Query: 112 TIPPELAYGESGSPPTIPPNATLQFDVELLS 142
             P   AYG  G    I PN  +   V LL+
Sbjct: 144 LFPSHKAYGYYGDQNKIGPNLPIISTVTLLN 174

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype. Length = 177

>gnl|CDD|237908 PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
           ++   V VH+T  L DG+  +S+R+   P  F LG G++ +G +  +  +K G+   F++
Sbjct: 6   QSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSL 65

Query: 114 PPELAYGESGSPPTI 128
            PE A+G   SP  I
Sbjct: 66  EPEAAFGVP-SPDLI 79

Length = 156

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 16/78 (20%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA 456
           + A   K  GN LFK G Y  A + YEKA++           +   A+A       N A 
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALEL----------DPDNAEAY-----YNLAL 45

Query: 457 CKLKL-KDYKQAEKLCTK 473
             LKL KDY++A +   K
Sbjct: 46  AYLKLGKDYEEALEDLEK 63

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 15/71 (21%)

Query: 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK 462
              GN  +K G Y  A + YEKA++           +   A A       N AA   KL 
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALEL----------DPDNADAY-----YNLAAAYYKLG 48

Query: 463 DYKQAEKLCTK 473
            Y++A +   K
Sbjct: 49  KYEEALEDYEK 59

Length = 100

>gnl|CDD|223976 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 173 DEVLVNYEARLEDGMVVGKADG----VEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQ 228
           D V ++Y  ++EDG VV   D     + F V  G   P L +A+   + GE+  + + P+
Sbjct: 7   DVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPE 66

Query: 229 YGFGE 233
             FGE
Sbjct: 67  DAFGE 71

Length = 174

>gnl|CDD|223976 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 287 NEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL 346
            +G VV +    K++DG V       E      F     Q+I GL+ A++  +  E   +
Sbjct: 4   EKGDVVSLHYTLKVEDGEVVDTTD--ENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTV 61

Query: 347 TIAPEYAFG 355
            I PE AFG
Sbjct: 62  EIPPEDAFG 70

Length = 174

>gnl|CDD|236791 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 9/110 (8%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKA 211
           G++ K+ KEG   E PKD D V+VNY+  L DG     +   G   + +     P   + 
Sbjct: 147 GLLYKVEKEG-TGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEG 205

Query: 212 VKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
           +K +KKG K+ L + P+  +G+ G         +P N+TL   +EL+  K
Sbjct: 206 LKNIKKGGKIKLVIPPELAYGKAGVP------GIPANSTLVFDVELLDVK 249

Length = 269

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
              L + G Y  A +  EKA++        G++  + A+AL      N A   L L DY 
Sbjct: 12  ALVLRRLGDYDEALELLEKALELAR---ELGEDHPETARAL-----NNLARLYLALGDYD 63

Query: 466 QAEKLCTK 473
           +A +   K
Sbjct: 64  EALEYLEK 71

Length = 78

>gnl|CDD|183207 PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 12/111 (10%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPT 207
           + G+  ++L +GE    P   D V V+Y  +L DG V    V + +  EF V      P 
Sbjct: 101 ESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPV--NGVIPG 157

Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
             +A+  M  G K  L +  +  +GE+G  AS     +PP +TL   +EL+
Sbjct: 158 WIEALTLMPVGSKWELTIPHELAYGERGAGAS-----IPPFSTLVFEVELL 203

Length = 206

>gnl|CDD|183207 PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 38/108 (35%), Positives = 53/108 (49%), Gaps = 14/108 (12%)

Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGL 331
           ++L +G+G   P     V+V   GKL DGTVF   V +G     +  EF  +   VI G 
Sbjct: 107 RVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARG-----EPAEFPVN--GVIPGW 158

Query: 332 DRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
             A+  M       LTI  E A+G   +    A +PP ST+ +EVEL+
Sbjct: 159 IEALTLMPVGSKWELTIPHELAYGERGAG---ASIPPFSTLVFEVELL 203

Length = 206

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	496
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	100.0
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	100.0
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.97
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.97
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.95
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.95
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.94
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.93
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.9
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.89
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.87
KOG0552	226	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.86
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.83
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.8
KOG0552	226	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.8
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.8
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.8
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.8
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.79
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.76
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.75
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.72
KOG4234	271	consensus TPR repeat-containing protein [General f	99.68
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.66
KOG0553	304	consensus TPR repeat-containing protein [General f	99.62
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.55
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.48
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.47
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.44
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.36
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.34
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.33
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.27
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.24
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.21
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.1
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.0
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.92
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	98.78
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	98.75
PRK01490	435	tig trigger factor; Provisional	98.68
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.66
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.65
PRK15359	144	type III secretion system chaperone protein SscB;	98.58
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	98.58
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.55
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.51
PRK15359	144	type III secretion system chaperone protein SscB;	98.48
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	98.45
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.45
KOG1310	758	consensus WD40 repeat protein [General function pr	98.42
PRK01490	435	tig trigger factor; Provisional	98.32
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.32
PF13371	73	TPR_9: Tetratricopeptide repeat	98.29
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.27
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.26
PRK11189	296	lipoprotein NlpI; Provisional	98.14
KOG4555	175	consensus TPR repeat-containing protein [Function	98.14
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.12
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.09
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.04
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.99
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.99
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	97.97
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.96
PF13512	142	TPR_18: Tetratricopeptide repeat	97.94
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.88
PRK15331	165	chaperone protein SicA; Provisional	97.87
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.86
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	97.84
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.84
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.82
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.82
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.82
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.76
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.74
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.73
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	97.71
PF13428	44	TPR_14: Tetratricopeptide repeat	97.7
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.65
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.61
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.6
KOG4234	271	consensus TPR repeat-containing protein [General f	97.55
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.53
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.49
KOG1125	579	consensus TPR repeat-containing protein [General f	97.48
PRK11189	296	lipoprotein NlpI; Provisional	97.44
KOG0553	304	consensus TPR repeat-containing protein [General f	97.44
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.43
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.43
PRK12370	553	invasion protein regulator; Provisional	97.37
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.34
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.29
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.28
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.26
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.26
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.25
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.2
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.17
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	97.13
PRK12370	553	invasion protein regulator; Provisional	97.12
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.12
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.1
PLN02789	320	farnesyltranstransferase	97.09
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.07
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.07
PLN02789	320	farnesyltranstransferase	97.06
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.06
KOG0547	606	consensus Translocase of outer mitochondrial membr	97.05
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.0
PRK10370	198	formate-dependent nitrite reductase complex subuni	96.99
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.96
PRK10803	263	tol-pal system protein YbgF; Provisional	96.89
KOG1128	777	consensus Uncharacterized conserved protein, conta	96.87
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	96.86
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	96.85
COG4783	484	Putative Zn-dependent protease, contains TPR repea	96.82
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	96.77
KOG2076	895	consensus RNA polymerase III transcription factor	96.76
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.76
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.74
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	96.71
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	96.71
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.67
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	96.66
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.65
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.59
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	96.58
KOG1126	638	consensus DNA-binding cell division cycle control	96.57
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.56
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.55
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.51
KOG1125	579	consensus TPR repeat-containing protein [General f	96.51
PRK11788	389	tetratricopeptide repeat protein; Provisional	96.5
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.46
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.43
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	96.42
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	96.42
KOG4648	536	consensus Uncharacterized conserved protein, conta	96.41
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.31
KOG2003	840	consensus TPR repeat-containing protein [General f	96.31
KOG2003	840	consensus TPR repeat-containing protein [General f	96.3
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	96.26
PF12688	120	TPR_5: Tetratrico peptide repeat	96.24
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	96.23
PF13431	34	TPR_17: Tetratricopeptide repeat	96.22
PF13371	73	TPR_9: Tetratricopeptide repeat	96.18
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	96.17
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	96.15
PRK10803	263	tol-pal system protein YbgF; Provisional	96.14
PRK11788	389	tetratricopeptide repeat protein; Provisional	96.1
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	96.08
KOG1126	638	consensus DNA-binding cell division cycle control	96.07
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.04
PF13431	34	TPR_17: Tetratricopeptide repeat	96.01
KOG2076	895	consensus RNA polymerase III transcription factor	95.99
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.96
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	95.93
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	95.92
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.74
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	95.64
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	95.58
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	95.57
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	95.57
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	95.54
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	95.38
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.2
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	95.16
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.09
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	94.99
PRK14574	822	hmsH outer membrane protein; Provisional	94.98
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	94.81
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	94.69
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	94.66
PRK15331	165	chaperone protein SicA; Provisional	94.64
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	94.58
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	94.55
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	94.49
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.31
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	94.3
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	94.22
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	94.19
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	94.09
KOG1129	478	consensus TPR repeat-containing protein [General f	94.05
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	94.04
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	94.03
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	93.75
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	93.71
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	93.26
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.14
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	93.0
KOG3364	149	consensus Membrane protein involved in organellar	92.99
KOG3785	557	consensus Uncharacterized conserved protein [Funct	92.86
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	92.7
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	92.57
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	92.45
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	92.44
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	92.41
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.36
KOG3060	289	consensus Uncharacterized conserved protein [Funct	92.2
KOG1941	518	consensus Acetylcholine receptor-associated protei	92.16
PRK14720	906	transcript cleavage factor/unknown domain fusion p	92.15
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	91.94
KOG1128	777	consensus Uncharacterized conserved protein, conta	91.8
PRK14720	906	transcript cleavage factor/unknown domain fusion p	91.71
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	91.59
PRK14574	822	hmsH outer membrane protein; Provisional	91.58
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	91.43
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	91.33
KOG2376	652	consensus Signal recognition particle, subunit Srp	90.89
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	90.88
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	90.88
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	90.87
KOG2796	366	consensus Uncharacterized conserved protein [Funct	90.75
COG4976	287	Predicted methyltransferase (contains TPR repeat)	90.59
PF04212	69	MIT: MIT (microtubule interacting and transport) d	90.42
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	90.17
COG4700	251	Uncharacterized protein conserved in bacteria cont	90.09
KOG1129	478	consensus TPR repeat-containing protein [General f	90.07
PF12688	120	TPR_5: Tetratrico peptide repeat	89.83
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	89.73
PRK11906	458	transcriptional regulator; Provisional	89.67
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	89.61
KOG1586	288	consensus Protein required for fusion of vesicles	89.35
cd02656	75	MIT MIT: domain contained within Microtubule Inter	89.3
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	89.28
PF13512	142	TPR_18: Tetratricopeptide repeat	88.63
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	88.62
PF13428	44	TPR_14: Tetratricopeptide repeat	88.41
PF03704	146	BTAD: Bacterial transcriptional activator domain;	88.41
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	88.03
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	87.44
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	87.36
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	87.31
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	87.02
COG4783	484	Putative Zn-dependent protease, contains TPR repea	86.89
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	86.79
KOG3785	557	consensus Uncharacterized conserved protein [Funct	86.46
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	86.4
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	86.19
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	85.98
KOG2471	696	consensus TPR repeat-containing protein [General f	85.98
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	85.61
PRK10941	269	hypothetical protein; Provisional	85.1
COG3947	361	Response regulator containing CheY-like receiver a	84.78
PRK10941	269	hypothetical protein; Provisional	84.23
KOG3060	289	consensus Uncharacterized conserved protein [Funct	83.55
KOG2796	366	consensus Uncharacterized conserved protein [Funct	83.49
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	82.39
KOG4340	459	consensus Uncharacterized conserved protein [Funct	82.35
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	82.3
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	82.09
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	81.98
PRK11906	458	transcriptional regulator; Provisional	81.62
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	81.39
KOG4555	175	consensus TPR repeat-containing protein [Function	81.32
COG0457	291	NrfG FOG: TPR repeat [General function prediction	81.04
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	80.99
KOG2376	652	consensus Signal recognition particle, subunit Srp	80.98
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	80.37
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	80.34

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.7e-56  Score=428.09  Aligned_cols=297  Identities=48%  Similarity=0.761  Sum_probs=276.5

Q ss_pred             ccccccCCCCCCeEEEEEEEEeCCCceeeec---cceEEEecCCCCcchHHHHHhccccCcEEEEEecCCCccCCCCCCC
Q 011003          162 EGEKWENPKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA  238 (496)
Q Consensus       162 ~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~ge~~~v~vp~~~~~g~~~~~~  238 (496)
                      +|+|+.+|..||.|.+||++++.+|+.|+++   ++..|.+|.+.++.||..++.+|+.              |+.+.  
T Consensus         2 eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~--   65 (397)
T KOG0543|consen    2 EGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRDGDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGS--   65 (397)
T ss_pred             CCCCccCCCCCceeEEEEeEEecCCeecccccCCCceeeecCCCccccccccccccccc--------------cccCC--
Confidence            6889999999999999999999999999987   4789999999999999999999987              33333  


Q ss_pred             CCCCCCCCCCceEEEEEEeeeecceeeeccCcceEEEEEecCCC-cCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCccc
Q 011003          239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDG-FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQL  317 (496)
Q Consensus       239 ~~~~~~i~~~~~l~~ev~l~~~~~~~d~~~d~~~~k~il~~G~g-~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~  317 (496)
                         .+.||++++|.|+|+|+          |++++|+|+++|.| ..+|..|..|.+||.+.+.|+ +|+++     ...
T Consensus        66 ---pp~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~-----~~~  126 (397)
T KOG0543|consen   66 ---PPKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQR-----ELR  126 (397)
T ss_pred             ---CCCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceecc-----ccc
Confidence               36789999999999998          89999999999999 799999999999999999998 66654     344


Q ss_pred             EEEEcCc-cchhhHHHHHHhccccCcEEEEEEcCCCccCCccccccccCCCCCCeEEEEEEEeeee-ccccccccChHHH
Q 011003          318 FEFKTDE-EQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE-KEKESWDMNTEEK  395 (496)
Q Consensus       318 ~~~~lg~-~~~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~-~~~~~~~~~~~e~  395 (496)
                      |.|.+|+ ..++.||+.||+.|++||++.|+|+|+|+||+.+..  .+.|||+++|.|+|+|++|. .....|.|..+++
T Consensus       127 fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~--~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~  204 (397)
T KOG0543|consen  127 FEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGE--PPLIPPNATLLYEVELLDFELKEDESWKMFAEER  204 (397)
T ss_pred             eEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCC--CCCCCCCceEEEEEEEEeeecCcccccccchHHH
Confidence            8888888 589999999999999999999999999999966554  38899999999999999999 7888999999999


Q ss_pred             HHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHh
Q 011003          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKC  475 (496)
Q Consensus       396 ~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  475 (496)
                      ++.|.+.|++||.+||+|+|..|...|.+|+++|+++...++++.+.+..++..||+|+|+||+|+++|.+|+..|++||
T Consensus       205 l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL  284 (397)
T KOG0543|consen  205 LEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL  284 (397)
T ss_pred             HHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCcchhcccccccccc
Q 011003          476 ESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       476 ~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      +++|+|+|||||||+||+.+
T Consensus       285 e~~~~N~KALyRrG~A~l~~  304 (397)
T KOG0543|consen  285 ELDPNNVKALYRRGQALLAL  304 (397)
T ss_pred             hcCCCchhHHHHHHHHHHhh
Confidence            99999999999999999875

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3e-34  Score=276.15  Aligned_cols=316  Identities=40%  Similarity=0.622  Sum_probs=239.2

Q ss_pred             EcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCcccCCCCC
Q 011003           45 KEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS  124 (496)
Q Consensus        45 ~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ayg~~~~  124 (496)
                      ++|+|+..|..||.|.+||++++.||+.||||.+ +.|+.|.+|.+.++.||..++..|+.              |..+.
T Consensus         1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~   65 (397)
T KOG0543|consen    1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGS   65 (397)
T ss_pred             CCCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCccccccccccccccc--------------cccCC
Confidence            4799999999999999999999999999999998 89999999999999999999999998              66777


Q ss_pred             CCCCCCCCceEEEEEEEEEeecceeccCccceeEeeecccc-ccCCCCCCeEEEEEEEEeCCCceeeecc-ceEEEecC-
Q 011003          125 PPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEK-WENPKDLDEVLVNYEARLEDGMVVGKAD-GVEFTVKD-  201 (496)
Q Consensus       125 ~~~ip~~~~l~~~v~l~~~~~~~~~~~d~~~~k~i~~~g~g-~~~~~~~d~V~v~y~~~~~~g~~~~~~~-~~~~~~g~-  201 (496)
                      ++.||+++++.|+|+|+          |+.++++|++.|.| ..+|..+-.|.+||.+.+.++ +|+++. .+.|.+|. 
T Consensus        66 pp~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~~~fe~~~Ge~  134 (397)
T KOG0543|consen   66 PPKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRELRFEFGEGED  134 (397)
T ss_pred             CCCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccccceEEecCCc
Confidence            88999999999999997          89999999999999 899999999999999999988 666653 46777888 


Q ss_pred             CCCcchHHHHHhccccCcEEEEEecCCCccCCCCCCCCCCCCCCCCCceEEEEEEeeeecceeeeccCcceEEEEEecCC
Q 011003          202 GHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGD  281 (496)
Q Consensus       202 ~~~~~gl~~~l~~m~~ge~~~v~vp~~~~~g~~~~~~~~~~~~i~~~~~l~~ev~l~~~~~~~d~~~d~~~~k~il~~G~  281 (496)
                      ..+|.||+.+|..|++||.+.|+|+|+|+||+.+..    .+.|||+++|.|+|+|+++....+.....           
T Consensus       135 ~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~----~p~IPPnA~l~yEVeL~~f~~~~~~s~~~-----------  199 (397)
T KOG0543|consen  135 IDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGE----PPLIPPNATLLYEVELLDFELKEDESWKM-----------  199 (397)
T ss_pred             cchhHHHHHHHHhcCccceEEEEeCcccccCCCCCC----CCCCCCCceEEEEEEEEeeecCccccccc-----------
Confidence            479999999999999999999999999999954432    48899999999999999987222111100           


Q ss_pred             CcCCCCCCCeEEEEEEEE-EcCCcEEEEcCCCCCcccEEEEcCcc-chhhHHHHHHhccccCcEEEEEEcCCCccCCccc
Q 011003          282 GFERPNEGAVVKVKLIGK-LQDGTVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAES  359 (496)
Q Consensus       282 g~~~p~~~~~V~v~y~~~-~~~g~~~~~~~~~~~~~~~~~~lg~~-~~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~  359 (496)
                             ....++.+..+ -+.|+.+             |.-|.- ....-.+.|+.-|.          ...       
T Consensus       200 -------~~~e~l~~A~~~ke~Gn~~-------------fK~gk~~~A~~~Yerav~~l~----------~~~-------  242 (397)
T KOG0543|consen  200 -------FAEERLEAADRKKERGNVL-------------FKEGKFKLAKKRYERAVSFLE----------YRR-------  242 (397)
T ss_pred             -------chHHHHHHHHHHHHhhhHH-------------HhhchHHHHHHHHHHHHHHhh----------ccc-------
Confidence                   00000000000 0112221             111110 11222222222110          000       


Q ss_pred             cccccCCCCCCeEEEEEEEeeeeccccccccChHHHHHHH---hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCC
Q 011003          360 QQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAA---GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG  436 (496)
Q Consensus       360 ~~~~~~ip~~~~l~f~v~l~~~~~~~~~~~~~~~e~~~~a---~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~  436 (496)
                                                 .++. .+++...+   ..+..-+-.+.|.++|..|+..-.++|.+        
T Consensus       243 ---------------------------~~~~-ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--------  286 (397)
T KOG0543|consen  243 ---------------------------SFDE-EEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL--------  286 (397)
T ss_pred             ---------------------------cCCH-HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--------
Confidence                                       0010 11222222   22334555667899999999999999998        


Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003          437 DEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK  481 (496)
Q Consensus       437 ~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~  481 (496)
                             ++...+++.-++.|++.+++|+.|+.++.+|++++|+|
T Consensus       287 -------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N  324 (397)
T KOG0543|consen  287 -------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN  324 (397)
T ss_pred             -------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence                   55568899999999999999999999999999999999

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=6.8e-31  Score=224.90  Aligned_cols=176  Identities=28%  Similarity=0.473  Sum_probs=147.7

Q ss_pred             EEecCCCCcchHHHHHhccccCcEEEEEecCCCccCCCCCCCCCCCCCCCCCceEEEEEEeeeec---ceeeeccCcceE
Q 011003          197 FTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK---TVSEITDDKKVI  273 (496)
Q Consensus       197 ~~~g~~~~~~gl~~~l~~m~~ge~~~v~vp~~~~~g~~~~~~~~~~~~i~~~~~l~~ev~l~~~~---~~~d~~~d~~~~  273 (496)
                      +++|.+.++++++.++.+|+.||++.+++||+++||..+..         ....+++.+.++...   ..+.+.....+.
T Consensus         1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~   71 (188)
T KOG0549|consen    1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG---------DLNILVITILLVLLFRASAAEKWNPDEELQ   71 (188)
T ss_pred             CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc---------cccceEEEeeeeehhhhhhhhhcCCCCcee
Confidence            46788899999999999999999999999999999954432         233456666666543   333444556666


Q ss_pred             EEEEecCC-CcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCC
Q 011003          274 KKILKEGD-GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEY  352 (496)
Q Consensus       274 k~il~~G~-g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~  352 (496)
                      -.++++-. +..+...||.+.+||++.+.||++||+++.  +++|++|.+|.+++|+||+++|.+||+||++.++|||++
T Consensus        72 I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~--rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~L  149 (188)
T KOG0549|consen   72 IGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYS--RGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHL  149 (188)
T ss_pred             EEEEECCccccccccCCCEEEEEEEEEecCCCEEeeecc--CCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccc
Confidence            66666522 667889999999999999999999999876  789999999999999999999999999999999999999


Q ss_pred             ccCCccccccccCCCCCCeEEEEEEEeeeecccc
Q 011003          353 AFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE  386 (496)
Q Consensus       353 ~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~~~~~  386 (496)
                      |||++|.+   +.||++++|+|+|||+++.+.+.
T Consensus       150 gYG~~G~~---~~IP~~A~LiFdiELv~i~~~~~  180 (188)
T KOG0549|consen  150 GYGERGAP---PKIPGDAVLIFDIELVKIERGPP  180 (188)
T ss_pred             cCccCCCC---CCCCCCeeEEEEEEEEEeecCCC
Confidence            99999986   45999999999999999987543

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=8.7e-31  Score=234.03  Aligned_cols=223  Identities=22%  Similarity=0.302  Sum_probs=189.1

Q ss_pred             CcceEEEEEecCCCcCCC--CCCCeEEEEEEEEEcC--CcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEE
Q 011003          269 DKKVIKKILKEGDGFERP--NEGAVVKVKLIGKLQD--GTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVA  344 (496)
Q Consensus       269 d~~~~k~il~~G~g~~~p--~~~~~V~v~y~~~~~~--g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~  344 (496)
                      ..++.|+|+..|+| +-|  ..|..|.+||.....+  ++++|+++.  -++|+.+++|...-.+.||.+|.+|+++|.+
T Consensus         9 ~~gv~Kril~~G~g-~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk--~gkPmeiiiGkkFkL~VwE~il~tM~v~Eva   85 (329)
T KOG0545|consen    9 VEGVKKRILHGGTG-ELPEFIDGTRVIFHFRTLKCDEERTVIDDSRK--VGKPMEIIIGKKFKLEVWEIILTTMRVHEVA   85 (329)
T ss_pred             chhhhHhhccCCCc-cCccccCCceEEEEEEecccCcccccccchhh--cCCCeEEeeccccccHHHHHHHHHHhhhhHH
Confidence            45789999999999 555  6699999999988764  678988865  7899999999999999999999999999999


Q ss_pred             EEEEcCCC--------------ccCCc--------------------cccccccCCCCCCeEEEEEEEeeeec----ccc
Q 011003          345 LLTIAPEY--------------AFGSA--------------------ESQQELAVVPPNSTVHYEVELVSFEK----EKE  386 (496)
Q Consensus       345 ~v~i~~~~--------------~yg~~--------------------~~~~~~~~ip~~~~l~f~v~l~~~~~----~~~  386 (496)
                      .|+|....              +-|..                    |..........-++|+|.|+|+++..    ..+
T Consensus        86 qF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~e  165 (329)
T KOG0545|consen   86 QFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRE  165 (329)
T ss_pred             HhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhccc
Confidence            99986421              11111                    00000011123378999999999986    467


Q ss_pred             ccccChHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccC---CCCChHHHHHHHHHHHHhhhHHHHHHHhccC
Q 011003          387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD---TSFGDEEKKQAKALKVACNLNNAACKLKLKD  463 (496)
Q Consensus       387 ~~~~~~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~---~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~  463 (496)
                      .|+|+.+||+.....++++||.+|+.|+|.+|..+|..|+-.+..-   ....++++.+++.....+++|.|+|+++.++
T Consensus       166 ~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e  245 (329)
T KOG0545|consen  166 TWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEE  245 (329)
T ss_pred             cccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHH
Confidence            8999999999999999999999999999999999999999887543   4556789999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003          464 YKQAEKLCTKKCESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       464 ~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~  494 (496)
                      |.++++.|+.+|..+|.|+|||||||+|+.+
T Consensus       246 ~yevleh~seiL~~~~~nvKA~frRakAhaa  276 (329)
T KOG0545|consen  246 YYEVLEHCSEILRHHPGNVKAYFRRAKAHAA  276 (329)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Confidence            9999999999999999999999999999865

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.8e-27  Score=203.92  Aligned_cols=169  Identities=32%  Similarity=0.470  Sum_probs=139.2

Q ss_pred             EEeCCCcccHHHHHHHccCcCCcEEEEEecCCcccCCCCCCCCCCCCCceEEEEEEEEEeecc---eeccCccceeEeee
Q 011003           85 FTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVK---DICKDGGIIKKILK  161 (496)
Q Consensus        85 ~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~~~---~~~~d~~~~k~i~~  161 (496)
                      |.+|.+++++|.+.++.||+.|+++.+.+||+++||..+..    .-..++|.+.++....+.   ....+..+...+..
T Consensus         1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~~   76 (188)
T KOG0549|consen    1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG----DLNILVITILLVLLFRASAAEKWNPDEELQIGVLK   76 (188)
T ss_pred             CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc----cccceEEEeeeeehhhhhhhhhcCCCCceeEEEEE
Confidence            45788899999999999999999999999999999955432    112456666666554332   22234445555555


Q ss_pred             cc-ccccCCCCCCeEEEEEEEEeCCCceeeec----cceEEEecCCCCcchHHHHHhccccCcEEEEEecCCCccCCCCC
Q 011003          162 EG-EKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGK  236 (496)
Q Consensus       162 ~g-~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~ge~~~v~vp~~~~~g~~~~  236 (496)
                      +- ....+.+.||.+.+||++.+.||++|++|    +|+.|.+|.+++++||+++|.+||+||++.++|||++|||++|.
T Consensus        77 ~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~  156 (188)
T KOG0549|consen   77 KPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGYGERGA  156 (188)
T ss_pred             CCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccCccCCC
Confidence            53 25568889999999999999999999987    58999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCCCCceEEEEEEeeeecc
Q 011003          237 SASGNEGAVPPNATLQIALELVSWKT  262 (496)
Q Consensus       237 ~~~~~~~~i~~~~~l~~ev~l~~~~~  262 (496)
                      +     +.||++++|+|+|+|+.+..
T Consensus       157 ~-----~~IP~~A~LiFdiELv~i~~  177 (188)
T KOG0549|consen  157 P-----PKIPGDAVLIFDIELVKIER  177 (188)
T ss_pred             C-----CCCCCCeeEEEEEEEEEeec
Confidence            5     56999999999999998864

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3.5e-27  Score=177.59  Aligned_cols=106  Identities=58%  Similarity=1.029  Sum_probs=103.4

Q ss_pred             CeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCc
Q 011003           38 GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL  117 (496)
Q Consensus        38 g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~  117 (496)
                      |+.++++.+|+|...|++||.|++||++.+.||+.||||.+++.|+.|.+|.+++|+||++++..|.+|+++++.|+|++
T Consensus         2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd~   81 (108)
T KOG0544|consen    2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPDY   81 (108)
T ss_pred             CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeecccc
Confidence            68899999999988999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCceEEEEEEEEE
Q 011003          118 AYGESGSPPTIPPNATLQFDVELLSW  143 (496)
Q Consensus       118 ayg~~~~~~~ip~~~~l~~~v~l~~~  143 (496)
                      |||..+.+..||+|++|+|+|||+++
T Consensus        82 aYG~~G~p~~IppNatL~FdVEll~v  107 (108)
T KOG0544|consen   82 AYGPRGHPGGIPPNATLVFDVELLKV  107 (108)
T ss_pred             ccCCCCCCCccCCCcEEEEEEEEEec
Confidence            99999999999999999999999986

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=9.6e-27  Score=204.35  Aligned_cols=108  Identities=57%  Similarity=0.977  Sum_probs=104.5

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEE
Q 011003           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (496)
Q Consensus        33 ~~~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~  112 (496)
                      ..+++|++|++++.|+| ..|..+|.|.+||++++.||++||||+++++|+.|.+|  ++|+||.++|.+|++|++++++
T Consensus        97 ~~~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~  173 (205)
T COG0545          97 KTLPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLT  173 (205)
T ss_pred             eECCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEE
Confidence            66899999999999999 89999999999999999999999999999999999999  9999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCceEEEEEEEEE
Q 011003          113 IPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (496)
Q Consensus       113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~  143 (496)
                      |||++|||..+.++.||||++|+|+|+|+++
T Consensus       174 IP~~laYG~~g~~g~Ippns~LvFeVeLl~v  204 (205)
T COG0545         174 IPPELAYGERGVPGVIPPNSTLVFEVELLDV  204 (205)
T ss_pred             eCchhccCcCCCCCCCCCCCeEEEEEEEEec
Confidence            9999999999987779999999999999986

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.3e-25  Score=169.16  Aligned_cols=106  Identities=38%  Similarity=0.638  Sum_probs=100.3

Q ss_pred             ceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcC
Q 011003          271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAP  350 (496)
Q Consensus       271 ~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~  350 (496)
                      ++.+.++.+|+|...|..|++|++||.+.+.||+.||++..  ++.||.|.+|.+++|+||++++..|.+||++.++|+|
T Consensus         2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~d--r~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~p   79 (108)
T KOG0544|consen    2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRD--RGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISP   79 (108)
T ss_pred             CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccc--cCCCeeEEecCcceeechhhcchhccccccceeeecc
Confidence            36788999999999999999999999999999999999865  7899999999999999999999999999999999999


Q ss_pred             CCccCCccccccccCCCCCCeEEEEEEEeee
Q 011003          351 EYAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (496)
Q Consensus       351 ~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~  381 (496)
                      ++|||..|.+   ..||||++|+|+|||+++
T Consensus        80 d~aYG~~G~p---~~IppNatL~FdVEll~v  107 (108)
T KOG0544|consen   80 DYAYGPRGHP---GGIPPNATLVFDVELLKV  107 (108)
T ss_pred             ccccCCCCCC---CccCCCcEEEEEEEEEec
Confidence            9999999965   689999999999999986

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2.7e-23  Score=182.64  Aligned_cols=107  Identities=41%  Similarity=0.576  Sum_probs=100.3

Q ss_pred             ccCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEE
Q 011003          267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL  346 (496)
Q Consensus       267 ~~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v  346 (496)
                      +..+++.+++++.|+| ..|..+++|++||.|++.||++||+++.  +++|+.|.+|  ++|+||.++|++|++|++|++
T Consensus        98 ~~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~--rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l  172 (205)
T COG0545          98 TLPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYD--RGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKL  172 (205)
T ss_pred             ECCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccc--cCCCceeecC--CeeehHHHHHhhCCCCceEEE
Confidence            4577999999999999 8999999999999999999999999865  8999999999  999999999999999999999


Q ss_pred             EEcCCCccCCccccccccCCCCCCeEEEEEEEeee
Q 011003          347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (496)
Q Consensus       347 ~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~  381 (496)
                      +|||++|||..+.+   ..|||+++|+|+|+|+++
T Consensus       173 ~IP~~laYG~~g~~---g~Ippns~LvFeVeLl~v  204 (205)
T COG0545         173 TIPPELAYGERGVP---GVIPPNSTLVFEVELLDV  204 (205)
T ss_pred             EeCchhccCcCCCC---CCCCCCCeEEEEEEEEec
Confidence            99999999999865   459999999999999986

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.89  E-value=1.9e-22  Score=184.20  Aligned_cols=108  Identities=46%  Similarity=0.776  Sum_probs=103.6

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEE
Q 011003           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (496)
Q Consensus        33 ~~~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~  112 (496)
                      ..+++|++|+++++|+| ..|..+|.|.|||++++.||++|++|+.+++|+.|.+|  ++++||+++|.+|++|+++.|+
T Consensus        98 ~~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~  174 (206)
T PRK11570         98 NSTESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELT  174 (206)
T ss_pred             EECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEE
Confidence            66899999999999999 78999999999999999999999999988899999997  7999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCceEEEEEEEEE
Q 011003          113 IPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (496)
Q Consensus       113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~  143 (496)
                      |||++|||..+.++.||++++|+|+|+|+++
T Consensus       175 IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i  205 (206)
T PRK11570        175 IPHELAYGERGAGASIPPFSTLVFEVELLEI  205 (206)
T ss_pred             ECHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence            9999999999988899999999999999987

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.87  E-value=1.7e-21  Score=173.69  Aligned_cols=110  Identities=35%  Similarity=0.511  Sum_probs=102.6

Q ss_pred             eecCCCeEEEEEEc--ccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEE
Q 011003           33 EIGNQGLKKKLVKE--GEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV  110 (496)
Q Consensus        33 ~~~~~g~~~~~l~~--G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~  110 (496)
                      ..+++|++|.+++.  |+| ..|+.||.|.+||++++.||++|++++.. .|+.|.+|.+++++||+++|.+|++||+++
T Consensus        65 ~~t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~-~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~  142 (177)
T TIGR03516        65 ETSQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEEL-GPQTYKVDQQDLFSGLRDGLKLMKEGETAT  142 (177)
T ss_pred             eECCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCC-CCEEEEeCCcchhHHHHHHHcCCCCCCEEE
Confidence            55889999999976  666 67899999999999999999999999874 699999999999999999999999999999


Q ss_pred             EEecCCcccCCCCCCCCCCCCCceEEEEEEEEEe
Q 011003          111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (496)
Q Consensus       111 i~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~  144 (496)
                      |+|||++|||..+.+..||+|++|+|+|+|+++.
T Consensus       143 ~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       143 FLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             EEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence            9999999999999888999999999999999985

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=2.1e-21  Score=175.34  Aligned_cols=108  Identities=49%  Similarity=0.872  Sum_probs=103.0

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEc-CCCEEEeecCCCccEE-EEeCCCcccHHHHHHHccCcCCcEEE
Q 011003           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFK-FTLGQGNVIKGWDIGIKTMKKGENAV  110 (496)
Q Consensus        33 ~~~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~-dg~~~~~t~~~~~p~~-~~~G~~~~~~gle~~l~~m~~Ge~~~  110 (496)
                      .+.++||.|+.++.|+| ..+..|+.|.+||.+++. +|++|++++.. .|+. |.+|.+++|+||+.+|.||++|++++
T Consensus       116 ~tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~-kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRr  193 (226)
T KOG0552|consen  116 RTLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGG-KPFKLFRLGSGEVIKGWDVGVEGMKVGGKRR  193 (226)
T ss_pred             eecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCC-CCccccccCCCCCCchHHHhhhhhccCCeeE
Confidence            56899999999999999 899999999999999999 99999999984 7888 99999999999999999999999999


Q ss_pred             EEecCCcccCCCCCCCCCCCCCceEEEEEEEEE
Q 011003          111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (496)
Q Consensus       111 i~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~  143 (496)
                      |+|||++|||..+.+ .||+|++|+|+|+|+.+
T Consensus       194 viIPp~lgYg~~g~~-~IppnstL~fdVEL~~v  225 (226)
T KOG0552|consen  194 VIIPPELGYGKKGVP-EIPPNSTLVFDVELLSV  225 (226)
T ss_pred             EEeCccccccccCcC-cCCCCCcEEEEEEEEec
Confidence            999999999999987 89999999999999876

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.83  E-value=7e-20  Score=173.43  Aligned_cols=109  Identities=50%  Similarity=0.883  Sum_probs=102.8

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEE
Q 011003           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (496)
Q Consensus        33 ~~~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~  112 (496)
                      ..+++|++|+|+++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.++  +++|||+++|.+|++|++++|+
T Consensus       142 ~~t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~~l~  218 (269)
T PRK10902        142 KTTSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLV  218 (269)
T ss_pred             EECCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--CcchHHHHHHhcCCCCcEEEEE
Confidence            55899999999999999 78999999999999999999999999988899999996  6999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCceEEEEEEEEEee
Q 011003          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (496)
Q Consensus       113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~  145 (496)
                      ||++++||..+.+ .||+|++|+|+|+|+++.+
T Consensus       219 IP~~laYG~~g~~-gIppns~LvfeVeLl~V~~  250 (269)
T PRK10902        219 IPPELAYGKAGVP-GIPANSTLVFDVELLDVKP  250 (269)
T ss_pred             ECchhhCCCCCCC-CCCCCCcEEEEEEEEEecc
Confidence            9999999999865 7999999999999999875

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.80  E-value=4.8e-19  Score=161.89  Aligned_cols=107  Identities=34%  Similarity=0.474  Sum_probs=98.3

Q ss_pred             ccCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEE
Q 011003          267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL  346 (496)
Q Consensus       267 ~~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v  346 (496)
                      +.++++.++++++|+| ..|..++.|.|||.+++.||++|++++.  .+.|+.|.++  .+++||+++|.+|++|+++.|
T Consensus        99 ~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~--~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~  173 (206)
T PRK11570         99 STESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVA--RGEPAEFPVN--GVIPGWIEALTLMPVGSKWEL  173 (206)
T ss_pred             ECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccC--CCCCeEEEee--chhhHHHHHHcCCCCCCEEEE
Confidence            3467899999999999 7899999999999999999999998754  5789999986  699999999999999999999


Q ss_pred             EEcCCCccCCccccccccCCCCCCeEEEEEEEeee
Q 011003          347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (496)
Q Consensus       347 ~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~  381 (496)
                      +||+++|||+.+.+   +.|||+++|+|+|+|+++
T Consensus       174 ~IP~~lAYG~~g~~---~~Ipp~s~Lif~veLl~i  205 (206)
T PRK11570        174 TIPHELAYGERGAG---ASIPPFSTLVFEVELLEI  205 (206)
T ss_pred             EECHHHcCCCCCCC---CCcCCCCeEEEEEEEEEE
Confidence            99999999998864   579999999999999987

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=3.2e-19  Score=161.27  Aligned_cols=109  Identities=33%  Similarity=0.499  Sum_probs=101.1

Q ss_pred             eccCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEc-CCcEEEEcCCCCCcccEE-EEcCccchhhHHHHHHhccccCcE
Q 011003          266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQ-DGTVFVKKGHSEEEQLFE-FKTDEEQVIDGLDRAVITMKKNEV  343 (496)
Q Consensus       266 ~~~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~-~g~~~~~~~~~~~~~~~~-~~lg~~~~~~gle~~l~~M~~Ge~  343 (496)
                      .+..++++++.++-|+| ..|..|++|.+||.+++. +|++||++   ..+.|+. |.+|.+++|+||+.++.+|++|.+
T Consensus       116 ~tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~---~~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGk  191 (226)
T KOG0552|consen  116 RTLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSN---FGGKPFKLFRLGSGEVIKGWDVGVEGMKVGGK  191 (226)
T ss_pred             eecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecc---cCCCCccccccCCCCCCchHHHhhhhhccCCe
Confidence            45678999999999999 999999999999999998 89999988   3588888 999999999999999999999999


Q ss_pred             EEEEEcCCCccCCccccccccCCCCCCeEEEEEEEeeee
Q 011003          344 ALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (496)
Q Consensus       344 ~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~  382 (496)
                      ++|+|||.+|||..+..    .|||+++|+|+|+|+.+.
T Consensus       192 RrviIPp~lgYg~~g~~----~IppnstL~fdVEL~~v~  226 (226)
T KOG0552|consen  192 RRVIIPPELGYGKKGVP----EIPPNSTLVFDVELLSVK  226 (226)
T ss_pred             eEEEeCccccccccCcC----cCCCCCcEEEEEEEEecC
Confidence            99999999999998875    699999999999999863

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.80  E-value=6.1e-19  Score=142.29  Aligned_cols=93  Identities=56%  Similarity=0.979  Sum_probs=87.0

Q ss_pred             CCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCcccCCCCC-CCC
Q 011003           49 GWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS-PPT  127 (496)
Q Consensus        49 G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ayg~~~~-~~~  127 (496)
                      |.++|+.||.|.+||++++.+|+++++++..+.|+.|.+|.+++++||+++|.+|++|++++|.||++++||..+. +..
T Consensus         1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~   80 (94)
T PF00254_consen    1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPK   80 (94)
T ss_dssp             SSSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTT
T ss_pred             CCccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCC
Confidence            4457999999999999999999999999877899999999999999999999999999999999999999999887 456


Q ss_pred             CCCCCceEEEEEEE
Q 011003          128 IPPNATLQFDVELL  141 (496)
Q Consensus       128 ip~~~~l~~~v~l~  141 (496)
                      ||++++++|+|+|+
T Consensus        81 ip~~~~l~f~Iell   94 (94)
T PF00254_consen   81 IPPNSTLVFEIELL   94 (94)
T ss_dssp             BTTTSEEEEEEEEE
T ss_pred             cCCCCeEEEEEEEC
Confidence            99999999999986

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=1.7e-19  Score=156.17  Aligned_cols=136  Identities=26%  Similarity=0.361  Sum_probs=102.8

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCcccCCCCCCCCCCCC
Q 011003           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (496)
Q Consensus        52 ~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~  131 (496)
                      ++++||.|++||++++.||++||+|.....|+.|++|.+++++|||+||.||.+|++..|.|||+.|||.++.       
T Consensus         2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~~-------   74 (174)
T COG1047           2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYDP-------   74 (174)
T ss_pred             cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCCh-------
Confidence            5789999999999999999999999886789999999999999999999999999999999999999999884       


Q ss_pred             CceEEEEEEEEEeecceeccCccceeEeeecc-----ccccCCCCCCeEEEEEEEEeCCCceeeeccceEEEe
Q 011003          132 ATLQFDVELLSWTSVKDICKDGGIIKKILKEG-----EKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTV  199 (496)
Q Consensus       132 ~~l~~~v~l~~~~~~~~~~~d~~~~k~i~~~g-----~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~~  199 (496)
                       .++-.+.+-.+....    +-.+..++...+     .+..+...++.|++||||+||+.++.|+-+-+...-
T Consensus        75 -~lvq~vp~~~F~~~~----~~~vGm~~~~~~~~~~~~~~V~~V~~~~V~VDfNHpLAGktL~feveVv~v~~  142 (174)
T COG1047          75 -DLVQRVPRDEFQGVG----ELEVGMEVEAEGGDGEIPGVVTEVSGDRVTVDFNHPLAGKTLHFEVEVVEVRE  142 (174)
T ss_pred             -HHeEEecHHHhCcCC----CCCCCcEEEEcCCCceeeEEEEEEcCCEEEEeCCCcCCCCeEEEEEEEEEEec
Confidence             333333332222111    111222222222     223344456899999999999999999876554443

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.80  E-value=2.2e-19  Score=157.05  Aligned_cols=126  Identities=24%  Similarity=0.384  Sum_probs=97.6

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCcccCCCCCCCCCCCC
Q 011003           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (496)
Q Consensus        52 ~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~  131 (496)
                      .++.|+.|.+||++++.||++|++|+..++|+.|.+|.+++++||+++|.+|++|+++.|.|||++|||.++.       
T Consensus         4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d~-------   76 (156)
T PRK15095          4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPSP-------   76 (156)
T ss_pred             ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh-------
Confidence            5789999999999999999999999877799999999999999999999999999999999999999998873       


Q ss_pred             CceEEEEEEEEEeeccee---------ccCcc-ceeEeeeccccccCCCCCCeEEEEEEEEeCCCceeeecc
Q 011003          132 ATLQFDVELLSWTSVKDI---------CKDGG-IIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKAD  193 (496)
Q Consensus       132 ~~l~~~v~l~~~~~~~~~---------~~d~~-~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~  193 (496)
                       .++..+....+......         ..++. +..+|+.        ..++.|++|+||+|||.++.|.-+
T Consensus        77 -~~v~~vp~~~f~~~~~~~~G~~~~~~~~~G~~~~~~V~~--------i~~~~v~vD~NHPLAGk~L~f~v~  139 (156)
T PRK15095         77 -DLIQYFSRRDFMDAGEPEIGAIMLFTAMDGSEMPGVIRE--------INGDSITVDFNHPLAGQTVHFDIE  139 (156)
T ss_pred             -HHEEEecHHHCCcccCCCCCCEEEEECCCCCEEEEEEEE--------EcCCEEEEECCCcCCCCEEEEEEE
Confidence             33444433333210000         01221 1223333        345899999999999999988754

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.79  E-value=1.1e-18  Score=155.72  Aligned_cols=109  Identities=22%  Similarity=0.321  Sum_probs=97.5

Q ss_pred             ccCcceEEEEEec--CCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEE
Q 011003          267 TDDKKVIKKILKE--GDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVA  344 (496)
Q Consensus       267 ~~d~~~~k~il~~--G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~  344 (496)
                      ....++.++++..  |+| ..|..||.|.+||.+++.||++|++++.   ..|+.|.+|.+++++||+++|.+|++||++
T Consensus        66 ~t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~---~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~  141 (177)
T TIGR03516        66 TSQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEE---LGPQTYKVDQQDLFSGLRDGLKLMKEGETA  141 (177)
T ss_pred             ECCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCC---CCCEEEEeCCcchhHHHHHHHcCCCCCCEE
Confidence            3456888888866  555 7899999999999999999999998753   459999999999999999999999999999


Q ss_pred             EEEEcCCCccCCccccccccCCCCCCeEEEEEEEeeee
Q 011003          345 LLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (496)
Q Consensus       345 ~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~  382 (496)
                      +|++|+++|||..+..   ..|||+++|+|+|+|+++.
T Consensus       142 ~~~iP~~~AYG~~g~~---~~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       142 TFLFPSHKAYGYYGDQ---NKIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             EEEECHHHcCCCCCCC---CCcCcCCcEEEEEEEEEec
Confidence            9999999999998764   5799999999999999985

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.76  E-value=6.5e-18  Score=136.30  Aligned_cols=94  Identities=39%  Similarity=0.668  Sum_probs=86.2

Q ss_pred             CcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCCccCCccccc
Q 011003          282 GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQ  361 (496)
Q Consensus       282 g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~  361 (496)
                      |+.+|..||.|.|||.+++.+|++|++++.  ...|+.|.+|.+.+++||+.+|.+|++||++.|+||++++||+.+...
T Consensus         1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~--~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~   78 (94)
T PF00254_consen    1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQ--EGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEP   78 (94)
T ss_dssp             SSSSBSTTSEEEEEEEEEETTSEEEEETTT--TTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCT
T ss_pred             CCccCCCCCEEEEEEEEEECCCcEEEEeee--cCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCC
Confidence            446799999999999999999999998854  688999999999999999999999999999999999999999988743


Q ss_pred             cccCCCCCCeEEEEEEEe
Q 011003          362 ELAVVPPNSTVHYEVELV  379 (496)
Q Consensus       362 ~~~~ip~~~~l~f~v~l~  379 (496)
                        ..||++++|+|+|+|+
T Consensus        79 --~~ip~~~~l~f~Iell   94 (94)
T PF00254_consen   79 --PKIPPNSTLVFEIELL   94 (94)
T ss_dssp             --TTBTTTSEEEEEEEEE
T ss_pred             --CCcCCCCeEEEEEEEC
Confidence              4599999999999986

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.75  E-value=5.4e-18  Score=151.92  Aligned_cols=126  Identities=20%  Similarity=0.261  Sum_probs=97.4

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCcccCCCCCCCCCCCC
Q 011003           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (496)
Q Consensus        52 ~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~  131 (496)
                      +++++++|+|+|++++.||++|++|+. ..|+.|++|.++++|+||++|.+|++|++++|.|||+.|||.++.       
T Consensus         2 kI~~~~vV~l~Y~l~~~dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d~-------   73 (196)
T PRK10737          2 KVAKDLVVSLAYQVRTEDGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDE-------   73 (196)
T ss_pred             ccCCCCEEEEEEEEEeCCCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh-------
Confidence            468999999999999999999999986 489999999999999999999999999999999999999999884       


Q ss_pred             CceEEEEEEEEEeeccee---------ccCccceeEeeeccccccCCCCCCeEEEEEEEEeCCCceeeeccc
Q 011003          132 ATLQFDVELLSWTSVKDI---------CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADG  194 (496)
Q Consensus       132 ~~l~~~v~l~~~~~~~~~---------~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~  194 (496)
                       .++..+....+.....+         ..++.+..+|++.        .++.|+||||||||+.++.|+-+.
T Consensus        74 -~lV~~vpr~~F~~~~~l~~G~~~~~~~~~G~~~~~V~ev--------~~d~V~vD~NHPLAG~~L~F~veV  136 (196)
T PRK10737         74 -NLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITAV--------EDDHVVVDGNHMLAGQNLKFNVEV  136 (196)
T ss_pred             -HHEEEecHHHCCCccCCCCCCEEEEeCCCCcEEEEEEEE--------cCCEEEEECCCcCCCCEEEEEEEE
Confidence             33443333222211111         1222233333333        448999999999999999887543

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.72  E-value=7.6e-17  Score=152.78  Aligned_cols=107  Identities=33%  Similarity=0.517  Sum_probs=97.4

Q ss_pred             cCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEE
Q 011003          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT  347 (496)
Q Consensus       268 ~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~  347 (496)
                      .+++++++|+++|+| ..|..+|.|.|||.+++.||++|++++.  .+.|+.|.++  .+++||+.+|.+|++|+++.|+
T Consensus       144 t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~--~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~~l~  218 (269)
T PRK10902        144 TSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYT--RGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLV  218 (269)
T ss_pred             CCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeecccc--CCCceEEecC--CcchHHHHHHhcCCCCcEEEEE
Confidence            467899999999999 7899999999999999999999998754  5678888875  6999999999999999999999


Q ss_pred             EcCCCccCCccccccccCCCCCCeEEEEEEEeeeec
Q 011003          348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (496)
Q Consensus       348 i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~~  383 (496)
                      ||++++||..+.    ..|||+++|+|+|+|+++..
T Consensus       219 IP~~laYG~~g~----~gIppns~LvfeVeLl~V~~  250 (269)
T PRK10902        219 IPPELAYGKAGV----PGIPANSTLVFDVELLDVKP  250 (269)
T ss_pred             ECchhhCCCCCC----CCCCCCCcEEEEEEEEEecc
Confidence            999999999875    35999999999999999975

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.68  E-value=5.9e-17  Score=141.55  Aligned_cols=90  Identities=26%  Similarity=0.352  Sum_probs=83.4

Q ss_pred             HHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHH
Q 011003          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKK  474 (496)
Q Consensus       395 ~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  474 (496)
                      .+..+.++|.+||.+|+.|+|.+|..+|+.||.+++...          ...+..||+|||+|.+|++.|..||.+|.+|
T Consensus        91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~----------~e~rsIly~Nraaa~iKl~k~e~aI~dcsKa  160 (271)
T KOG4234|consen   91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS----------TEERSILYSNRAAALIKLRKWESAIEDCSKA  160 (271)
T ss_pred             HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc----------HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhh
Confidence            378899999999999999999999999999999986542          4678999999999999999999999999999


Q ss_pred             hcccCCCcchhccccccccc
Q 011003          475 CESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       475 l~~dp~~~Ka~~rrg~a~~~  494 (496)
                      |+++|.+.||+-|||.||-.
T Consensus       161 iel~pty~kAl~RRAeayek  180 (271)
T KOG4234|consen  161 IELNPTYEKALERRAEAYEK  180 (271)
T ss_pred             HhcCchhHHHHHHHHHHHHh
Confidence            99999999999999999854

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=7.5e-17  Score=157.88  Aligned_cols=95  Identities=25%  Similarity=0.285  Sum_probs=88.1

Q ss_pred             ccccChHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHH
Q 011003          387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ  466 (496)
Q Consensus       387 ~~~~~~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~  466 (496)
                      .-.++.++++..|..+|.+||.+|+.|+|.+||.+|++||.+++..               ...|+|||+||..+|+|++
T Consensus       103 ~~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e---------------piFYsNraAcY~~lgd~~~  167 (606)
T KOG0547|consen  103 KKAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDE---------------PIFYSNRAACYESLGDWEK  167 (606)
T ss_pred             hhccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCC---------------chhhhhHHHHHHHHhhHHH
Confidence            3467888999999999999999999999999999999999986542               7889999999999999999


Q ss_pred             HHHHHHHHhcccCCCcchhccccccccccC
Q 011003          467 AEKLCTKKCESSVQKGSGIHSDGRFRFGRV  496 (496)
Q Consensus       467 Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l~  496 (496)
                      .+++|++||+++|+++|||||||.|+-+|.
T Consensus       168 Vied~TkALEl~P~Y~KAl~RRA~A~E~lg  197 (606)
T KOG0547|consen  168 VIEDCTKALELNPDYVKALLRRASAHEQLG  197 (606)
T ss_pred             HHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999998763

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.62  E-value=2.3e-16  Score=147.01  Aligned_cols=90  Identities=24%  Similarity=0.293  Sum_probs=84.1

Q ss_pred             ChHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHH
Q 011003          391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL  470 (496)
Q Consensus       391 ~~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~  470 (496)
                      ++++-...|+++|.+||.+++.++|.+|+.+|++||++               .+..+.+|+|||++|++|++|..|++|
T Consensus        73 ~~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l---------------~P~nAVyycNRAAAy~~Lg~~~~AVkD  137 (304)
T KOG0553|consen   73 TPEEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL---------------DPTNAVYYCNRAAAYSKLGEYEDAVKD  137 (304)
T ss_pred             ChHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---------------CCCcchHHHHHHHHHHHhcchHHHHHH
Confidence            33377889999999999999999999999999999999               445599999999999999999999999


Q ss_pred             HHHHhcccCCCcchhcccccccccc
Q 011003          471 CTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       471 ~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      |..||.+||++.|||-|.|.||+.+
T Consensus       138 ce~Al~iDp~yskay~RLG~A~~~~  162 (304)
T KOG0553|consen  138 CESALSIDPHYSKAYGRLGLAYLAL  162 (304)
T ss_pred             HHHHHhcChHHHHHHHHHHHHHHcc
Confidence            9999999999999999999999876

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=4.1e-15  Score=139.58  Aligned_cols=88  Identities=25%  Similarity=0.303  Sum_probs=81.8

Q ss_pred             HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE  476 (496)
Q Consensus       397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  476 (496)
                      +.|..+|++||.+||.++|+.|..+|+++|+.=+.+           ..+.+.||+|||+|++-+++|..||.||.+||.
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D-----------~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~  147 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCAD-----------PDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK  147 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCC-----------ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            378999999999999999999999999999975554           567799999999999999999999999999999


Q ss_pred             ccCCCcchhcccccccccc
Q 011003          477 SSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       477 ~dp~~~Ka~~rrg~a~~~l  495 (496)
                      ++|.|.||+||-|+|++.|
T Consensus       148 ~~P~h~Ka~~R~Akc~~eL  166 (390)
T KOG0551|consen  148 LKPTHLKAYIRGAKCLLEL  166 (390)
T ss_pred             cCcchhhhhhhhhHHHHHH
Confidence            9999999999999998765

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.48  E-value=1.9e-13  Score=119.62  Aligned_cols=72  Identities=21%  Similarity=0.373  Sum_probs=66.8

Q ss_pred             CCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCCccCCcc
Q 011003          285 RPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE  358 (496)
Q Consensus       285 ~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~  358 (496)
                      .+..++.|.+||.+++.||++|++++.  .+.|+.|.+|.+++++||+.+|.+|++||++.|.|||+.|||..+
T Consensus         4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~--~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d   75 (156)
T PRK15095          4 SVQSNSAVLVHFTLKLDDGSTAESTRN--NGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS   75 (156)
T ss_pred             ccCCCCEEEEEEEEEeCCCCEEEECCC--CCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence            467899999999999999999999853  478999999999999999999999999999999999999999875

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=2.3e-14  Score=142.54  Aligned_cols=84  Identities=32%  Similarity=0.361  Sum_probs=78.1

Q ss_pred             HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE  476 (496)
Q Consensus       397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  476 (496)
                      +.+.+.|.+||.+|+.|+|..|+..|++||+.               ++....+|+|||+||+|++++..|+.||+++|+
T Consensus       356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr---------------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie  420 (539)
T KOG0548|consen  356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR---------------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIE  420 (539)
T ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---------------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            45788899999999999999999999999998               455599999999999999999999999999999


Q ss_pred             ccCCCcchhcccccccccc
Q 011003          477 SSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       477 ~dp~~~Ka~~rrg~a~~~l  495 (496)
                      +||+++|+|+|+|.|+..+
T Consensus       421 L~p~~~kgy~RKg~al~~m  439 (539)
T KOG0548|consen  421 LDPNFIKAYLRKGAALRAM  439 (539)
T ss_pred             cCchHHHHHHHHHHHHHHH
Confidence            9999999999999998753

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.44  E-value=2.2e-14  Score=134.96  Aligned_cols=89  Identities=27%  Similarity=0.315  Sum_probs=82.0

Q ss_pred             hHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHH
Q 011003          392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC  471 (496)
Q Consensus       392 ~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~  471 (496)
                      .++.+..+.++|++||.+||+|+|.+||.+|++++...+               ....+|.|||++|+|++.|..|..||
T Consensus        90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P---------------~NpV~~~NRA~AYlk~K~FA~AE~DC  154 (536)
T KOG4648|consen   90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYP---------------HNPVYHINRALAYLKQKSFAQAEEDC  154 (536)
T ss_pred             HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCC---------------CCccchhhHHHHHHHHHHHHHHHHhH
Confidence            456678889999999999999999999999999999844               34788999999999999999999999


Q ss_pred             HHHhcccCCCcchhcccccccccc
Q 011003          472 TKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       472 ~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      +.|+.+|..++|||-||+.|+..|
T Consensus       155 ~~AiaLd~~Y~KAYSRR~~AR~~L  178 (536)
T KOG4648|consen  155 EAAIALDKLYVKAYSRRMQARESL  178 (536)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998766

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=3.9e-12  Score=110.59  Aligned_cols=72  Identities=28%  Similarity=0.398  Sum_probs=66.3

Q ss_pred             CCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCCccCCccc
Q 011003          286 PNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAES  359 (496)
Q Consensus       286 p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~  359 (496)
                      ...++.|+++|.+++.||++||+|..  ...|+.|.+|.+++++|||+||.+|.+||+..|.|||+.|||....
T Consensus         3 i~k~~~V~i~Y~~~~~dg~v~Dtt~e--~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~~   74 (174)
T COG1047           3 IEKGDVVSLHYTLKVEDGEVVDTTDE--NYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYDP   74 (174)
T ss_pred             ccCCCEEEEEEEEEecCCcEEEcccc--cCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCCh
Confidence            46789999999999999999998733  4789999999999999999999999999999999999999999753

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.34  E-value=5.2e-12  Score=113.48  Aligned_cols=71  Identities=14%  Similarity=0.236  Sum_probs=65.8

Q ss_pred             CCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCCccCCccc
Q 011003          286 PNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAES  359 (496)
Q Consensus       286 p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~  359 (496)
                      ...++.|+|+|++++.+|++|+++.   ...|+.|.+|.++++|+||.+|.+|.+|++..|.|||+.|||....
T Consensus         3 I~~~~vV~l~Y~l~~~dG~v~dst~---~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d~   73 (196)
T PRK10737          3 VAKDLVVSLAYQVRTEDGVLVDESP---VSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDE   73 (196)
T ss_pred             cCCCCEEEEEEEEEeCCCCEEEecC---CCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh
Confidence            4678999999999999999999873   4789999999999999999999999999999999999999999753

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.33  E-value=1.5e-12  Score=141.03  Aligned_cols=114  Identities=25%  Similarity=0.302  Sum_probs=99.7

Q ss_pred             CCCCCCeEEEEEEEeeeeccccccccChHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHH
Q 011003          365 VVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAK  444 (496)
Q Consensus       365 ~ip~~~~l~f~v~l~~~~~~~~~~~~~~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~  444 (496)
                      ..|+...+....++..+. ....|.++.+++...+..+|+.||.+|+.|+|.+|+..|++||++.+.             
T Consensus        94 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-------------  159 (615)
T TIGR00990        94 TAPKNAPVEPADELPEID-ESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-------------  159 (615)
T ss_pred             CCCCCCCCCccccccccc-hhhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-------------
Confidence            356666677766666554 456799999999999999999999999999999999999999997431             


Q ss_pred             HHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003          445 ALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       445 ~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                         ..+|+|+|.||+++++|.+|+.+|++||+++|++.++|+|+|.+|..+
T Consensus       160 ---~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l  207 (615)
T TIGR00990       160 ---PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL  207 (615)
T ss_pred             ---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence               346999999999999999999999999999999999999999998765

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=2.1e-12  Score=124.75  Aligned_cols=91  Identities=20%  Similarity=0.231  Sum_probs=83.0

Q ss_pred             HHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHH
Q 011003          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (496)
Q Consensus       394 e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~  473 (496)
                      -..+..+.+|++||.+|++|+|..|.++|+.||.+-++.           ....+.||.|||.+..++++..+||.+|+.
T Consensus       244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n-----------~~~naklY~nra~v~~rLgrl~eaisdc~~  312 (486)
T KOG0550|consen  244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN-----------KKTNAKLYGNRALVNIRLGRLREAISDCNE  312 (486)
T ss_pred             hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc-----------cchhHHHHHHhHhhhcccCCchhhhhhhhh
Confidence            345778899999999999999999999999999985443           556699999999999999999999999999


Q ss_pred             HhcccCCCcchhcccccccccc
Q 011003          474 KCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       474 al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      |+++||..+|||.|||+||+.|
T Consensus       313 Al~iD~syikall~ra~c~l~l  334 (486)
T KOG0550|consen  313 ALKIDSSYIKALLRRANCHLAL  334 (486)
T ss_pred             hhhcCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999865

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=2.1e-12  Score=116.36  Aligned_cols=83  Identities=27%  Similarity=0.362  Sum_probs=78.1

Q ss_pred             HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE  476 (496)
Q Consensus       397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  476 (496)
                      ..++++|++||.+|..++|..|+.+|.+||..               ++.-++.|.|||+||+|+++|..+..+|.+||+
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~---------------nP~~~~Y~tnralchlk~~~~~~v~~dcrralq   72 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICI---------------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ   72 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhc---------------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh
Confidence            45789999999999999999999999999998               777799999999999999999999999999999


Q ss_pred             ccCCCcchhccccccccc
Q 011003          477 SSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       477 ~dp~~~Ka~~rrg~a~~~  494 (496)
                      ++|+.+|++|-.|++++.
T Consensus        73 l~~N~vk~h~flg~~~l~   90 (284)
T KOG4642|consen   73 LDPNLVKAHYFLGQWLLQ   90 (284)
T ss_pred             cChHHHHHHHHHHHHHHh
Confidence            999999999999987753

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=5.3e-12  Score=125.94  Aligned_cols=83  Identities=25%  Similarity=0.297  Sum_probs=78.1

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+|++||.+|..|+|..|+.+|+.||.+               .+....+|+||++||.++++|.+|+.|+.++.+++
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l---------------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~   66 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIML---------------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN   66 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHcc---------------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            567899999999999999999999999998               44468999999999999999999999999999999


Q ss_pred             CCCcchhccccccccccC
Q 011003          479 VQKGSGIHSDGRFRFGRV  496 (496)
Q Consensus       479 p~~~Ka~~rrg~a~~~l~  496 (496)
                      |+|+|+|.|+|-|+++|.
T Consensus        67 p~w~kgy~r~Gaa~~~lg   84 (539)
T KOG0548|consen   67 PDWAKGYSRKGAALFGLG   84 (539)
T ss_pred             CchhhHHHHhHHHHHhcc
Confidence            999999999999999874

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.10  E-value=1.7e-11  Score=121.48  Aligned_cols=83  Identities=19%  Similarity=0.134  Sum_probs=78.0

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      .++.+|.++|.+|+.+.|..|+..|+|||++               ++..+.++.|||++|+|.++|..|+.||++||++
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~l---------------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~   67 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIEL---------------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL   67 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhc---------------CCcceeeechhhhhheeechhhhHHHHHHhhhhc
Confidence            5778999999999999999999999999998               5556889999999999999999999999999999


Q ss_pred             cCCCcchhcccccccccc
Q 011003          478 SVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       478 dp~~~Ka~~rrg~a~~~l  495 (496)
                      +|...|||||||.|++.+
T Consensus        68 dP~~~K~Y~rrg~a~m~l   85 (476)
T KOG0376|consen   68 DPTYIKAYVRRGTAVMAL   85 (476)
T ss_pred             CchhhheeeeccHHHHhH
Confidence            999999999999988765

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.00  E-value=6.6e-10  Score=83.74  Aligned_cols=66  Identities=24%  Similarity=0.302  Sum_probs=61.2

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhcc-CHHHHHHHHHHHhcc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKKCES  477 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~-~~~~Ai~~~~~al~~  477 (496)
                      +..+...|+.++..++|.+|+..|++|+++               ++....++.|||.||++++ +|.+|+.++++||++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---------------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL---------------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---------------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            567889999999999999999999999998               4455889999999999999 799999999999999


Q ss_pred             cC
Q 011003          478 SV  479 (496)
Q Consensus       478 dp  479 (496)
                      +|
T Consensus        68 ~P   69 (69)
T PF13414_consen   68 DP   69 (69)
T ss_dssp             ST
T ss_pred             Cc
Confidence            98

...

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.92  E-value=8.3e-10  Score=111.01  Aligned_cols=82  Identities=16%  Similarity=0.173  Sum_probs=74.8

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..++.+|+.+|..++|..|+..|.+||++-+.               ...+|.|||.||+++++|.+|+.+|++||+++
T Consensus         2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~---------------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~   66 (356)
T PLN03088          2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPN---------------NAELYADRAQANIKLGNFTEAVADANKAIELD   66 (356)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            356889999999999999999999999998433               36789999999999999999999999999999


Q ss_pred             CCCcchhcccccccccc
Q 011003          479 VQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       479 p~~~Ka~~rrg~a~~~l  495 (496)
                      |++..+||++|.+|+.+
T Consensus        67 P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088         67 PSLAKAYLRKGTACMKL   83 (356)
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            99999999999998765

>TIGR00115 tig trigger factor

Probab=98.78  E-value=2.1e-08  Score=103.03  Aligned_cols=101  Identities=23%  Similarity=0.402  Sum_probs=86.3

Q ss_pred             CCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCcccCCCCCCCCCCC
Q 011003           51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP  130 (496)
Q Consensus        51 ~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~  130 (496)
                      +.++.||.|.++|+++. +|+.++++..  .++.|.+|.+.+++||+++|.||++|+++.|.+++...|+..+.     +
T Consensus       145 ~~~~~gD~V~v~~~~~~-dg~~~~~~~~--~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~-----~  216 (408)
T TIGR00115       145 RAAEKGDRVTIDFEGFI-DGEAFEGGKA--ENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL-----A  216 (408)
T ss_pred             cccCCCCEEEEEEEEEE-CCEECcCCCC--CCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC-----C
Confidence            35789999999999976 8988888654  78999999999999999999999999999999999889987664     5


Q ss_pred             CCceEEEEEEEEEeecceeccCccceeEe
Q 011003          131 NATLQFDVELLSWTSVKDICKDGGIIKKI  159 (496)
Q Consensus       131 ~~~l~~~v~l~~~~~~~~~~~d~~~~k~i  159 (496)
                      |.++.|.|++.++........+..+.+.+
T Consensus       217 gk~~~f~v~i~~I~~~~~peldDefak~~  245 (408)
T TIGR00115       217 GKEATFKVTVKEVKEKELPELDDEFAKEL  245 (408)
T ss_pred             CCeEEEEEEEEEeccCCCCCCCHHHHHhc
Confidence            78999999999998766555566666653

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=1.5e-09  Score=103.68  Aligned_cols=105  Identities=24%  Similarity=0.259  Sum_probs=90.0

Q ss_pred             ChHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCCh---HH-HHHHHHHHHHhhhHHHHHHHhccCHHH
Q 011003          391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD---EE-KKQAKALKVACNLNNAACKLKLKDYKQ  466 (496)
Q Consensus       391 ~~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~---~~-~~~~~~~~~~~~~N~a~~~~kl~~~~~  466 (496)
                      +....++.++.+|+.||..|++++|..|..+|.+++++++.......   ++ ...+...+..++.|+|+|-+|++.|..
T Consensus       214 ~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~  293 (372)
T KOG0546|consen  214 DFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGG  293 (372)
T ss_pred             ccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCc
Confidence            34456788889999999999999999999999999999875222111   12 345788889999999999999999999


Q ss_pred             HHHHHHHHhcccCCCcchhcccccccccc
Q 011003          467 AEKLCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       467 Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      |+..|..+|+.++++.||||||+++++.+
T Consensus       294 a~~~~~~~~~~~~s~tka~~Rr~~~~~~~  322 (372)
T KOG0546|consen  294 ARFRTNEALRDERSKTKAHYRRGQAYKLL  322 (372)
T ss_pred             ceeccccccccChhhCcHHHHHHhHHHhh
Confidence            99999999999999999999999998765

>PRK01490 tig trigger factor; Provisional

Probab=98.68  E-value=6.6e-08  Score=100.18  Aligned_cols=99  Identities=25%  Similarity=0.445  Sum_probs=84.0

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCcccCCCCCCCCCCCC
Q 011003           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (496)
Q Consensus        52 ~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~  131 (496)
                      .++.||.|.++|+++. ||..++++..  .++.|.+|.+++++||+++|.||++|+++.|.+++...|+....     +|
T Consensus       157 ~~~~gD~V~vd~~~~~-~g~~~~~~~~--~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l-----ag  228 (435)
T PRK01490        157 PAENGDRVTIDFVGSI-DGEEFEGGKA--EDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL-----AG  228 (435)
T ss_pred             cCCCCCEEEEEEEEEE-CCEECcCCCC--CceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC-----CC
Confidence            5799999999999997 8888887654  68999999999999999999999999999999999888977664     56


Q ss_pred             CceEEEEEEEEEeecceeccCccceeE
Q 011003          132 ATLQFDVELLSWTSVKDICKDGGIIKK  158 (496)
Q Consensus       132 ~~l~~~v~l~~~~~~~~~~~d~~~~k~  158 (496)
                      .++.|.|+|.++........+..+.+.
T Consensus       229 k~~~f~v~v~~V~~~~~pel~Defak~  255 (435)
T PRK01490        229 KEATFKVTVKEVKEKELPELDDEFAKK  255 (435)
T ss_pred             CeEEEEEEEEEeccCCCCCCCHHHHHh
Confidence            899999999999865555555555553

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.66  E-value=3.7e-09  Score=100.52  Aligned_cols=90  Identities=22%  Similarity=0.213  Sum_probs=84.9

Q ss_pred             ChHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHH
Q 011003          391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL  470 (496)
Q Consensus       391 ~~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~  470 (496)
                      ..+++++.+...|.++..++..|.+..|+..|.+||.+               ++-.+.+|.+|+.+++|++++..||+|
T Consensus       106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~l---------------np~~a~l~~kr~sv~lkl~kp~~airD  170 (377)
T KOG1308|consen  106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIEL---------------NPPLAILYAKRASVFLKLKKPNAAIRD  170 (377)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCcchhhhhccccccccc---------------CCchhhhcccccceeeeccCCchhhhh
Confidence            45688999999999999999999999999999999998               666799999999999999999999999


Q ss_pred             HHHHhcccCCCcchhcccccccccc
Q 011003          471 CTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       471 ~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      |+.||+++|+..|.|-.|++|++.|
T Consensus       171 ~d~A~ein~Dsa~~ykfrg~A~rll  195 (377)
T KOG1308|consen  171 CDFAIEINPDSAKGYKFRGYAERLL  195 (377)
T ss_pred             hhhhhccCcccccccchhhHHHHHh
Confidence            9999999999999999999998876

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.65  E-value=5.4e-08  Score=84.06  Aligned_cols=83  Identities=10%  Similarity=0.109  Sum_probs=77.0

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      ..+.+-.-|..++..|+|++|.+.|+-...+               ++.....|.|+++|+-.+++|.+||..+.+|+.+
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~---------------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L   98 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY---------------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI   98 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            3466778899999999999999999999998               6667999999999999999999999999999999


Q ss_pred             cCCCcchhcccccccccc
Q 011003          478 SVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       478 dp~~~Ka~~rrg~a~~~l  495 (496)
                      +|+++.++|..|.|++.+
T Consensus        99 ~~ddp~~~~~ag~c~L~l  116 (157)
T PRK15363         99 KIDAPQAPWAAAECYLAC  116 (157)
T ss_pred             CCCCchHHHHHHHHHHHc
Confidence            999999999999999875

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.58  E-value=5.7e-08  Score=84.64  Aligned_cols=79  Identities=15%  Similarity=0.132  Sum_probs=59.3

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK  481 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~  481 (496)
                      +...|..++..|+|.+|+..|.+++..               ++.....+.|+|.++.++|+|.+|+..++++++++|++
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~---------------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~   91 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMA---------------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH   91 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc---------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            345688889999999999999999987               33446667777777777777777777777777777777


Q ss_pred             cchhcccccccccc
Q 011003          482 GSGIHSDGRFRFGR  495 (496)
Q Consensus       482 ~Ka~~rrg~a~~~l  495 (496)
                      +.+|+++|.++..+
T Consensus        92 ~~a~~~lg~~l~~~  105 (144)
T PRK15359         92 PEPVYQTGVCLKMM  105 (144)
T ss_pred             cHHHHHHHHHHHHc
Confidence            77777777766543

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=1.3e-07  Score=96.45  Aligned_cols=108  Identities=25%  Similarity=0.423  Sum_probs=88.9

Q ss_pred             EEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCcccCC
Q 011003           42 KLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGE  121 (496)
Q Consensus        42 ~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ayg~  121 (496)
                      .++.+=++ . ++.||.|+|+|.++. ||..|.....  ..+.|.+|+++++|||+.+|.||+.|+...|.+.....|..
T Consensus       149 a~~~~~e~-~-a~~gD~v~IDf~g~i-Dg~~fegg~a--e~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a  223 (441)
T COG0544         149 ATLEPVEG-A-AENGDRVTIDFEGSV-DGEEFEGGKA--ENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHA  223 (441)
T ss_pred             Cccccccc-c-cccCCEEEEEEEEEE-cCeeccCccc--cCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccch
Confidence            34444444 3 899999999999965 8998888654  67999999999999999999999999999998888888887


Q ss_pred             CCCCCCCCCCCceEEEEEEEEEeecceeccCccceeEe
Q 011003          122 SGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKI  159 (496)
Q Consensus       122 ~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~d~~~~k~i  159 (496)
                      ...     +|....|.|.|..+........|..+.+.+
T Consensus       224 ~~L-----aGK~a~F~V~vkeVk~~elpEldDEfAk~~  256 (441)
T COG0544         224 EEL-----AGKEATFKVKVKEVKKRELPELDDEFAKKL  256 (441)
T ss_pred             hHh-----CCCceEEEEEEEEEeecCCCCCCHHHHHhc
Confidence            775     568999999999998777666666665544

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=5.9e-08  Score=94.41  Aligned_cols=89  Identities=21%  Similarity=0.285  Sum_probs=82.7

Q ss_pred             hHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHH
Q 011003          392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC  471 (496)
Q Consensus       392 ~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~  471 (496)
                      ..+-...++..+++||.++++.+|..|+..|+.|+++++.+               +..|.|||+|++.+++|.+|+-++
T Consensus        42 ~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~---------------a~yy~nRAa~~m~~~~~~~a~~da  106 (486)
T KOG0550|consen   42 SQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN---------------ASYYSNRAATLMMLGRFEEALGDA  106 (486)
T ss_pred             cchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc---------------hhhhchhHHHHHHHHhHhhcccch
Confidence            34567889999999999999999999999999999997653               889999999999999999999999


Q ss_pred             HHHhcccCCCcchhcccccccccc
Q 011003          472 TKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       472 ~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      .+.++++|...|++.|-++|+.++
T Consensus       107 r~~~r~kd~~~k~~~r~~~c~~a~  130 (486)
T KOG0550|consen  107 RQSVRLKDGFSKGQLREGQCHLAL  130 (486)
T ss_pred             hhheecCCCccccccchhhhhhhh
Confidence            999999999999999999999875

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.51  E-value=1.9e-07  Score=69.30  Aligned_cols=64  Identities=16%  Similarity=0.170  Sum_probs=57.2

Q ss_pred             HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCc
Q 011003          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKG  482 (496)
Q Consensus       404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~  482 (496)
                      ..|..+++.|+|.+|+..|+++++.               .+....++.+++.|++.+|+|.+|+..++++++++|+|+
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~---------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQ---------------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCC---------------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            4688999999999999999999998               444588999999999999999999999999999999974

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.48  E-value=1e-07  Score=83.03  Aligned_cols=80  Identities=13%  Similarity=0.016  Sum_probs=72.1

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      ...+...|..+.+.|+|++|+..|.+|+.+-               +.....+.|++.|+.++|++.+|+..+++||+++
T Consensus        58 ~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~---------------p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359         58 WRAHIALAGTWMMLKEYTTAINFYGHALMLD---------------ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS  122 (144)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            4556779999999999999999999999983               3448899999999999999999999999999999


Q ss_pred             CCCcchhcccccccc
Q 011003          479 VQKGSGIHSDGRFRF  493 (496)
Q Consensus       479 p~~~Ka~~rrg~a~~  493 (496)
                      |+++.++..||.++.
T Consensus       123 p~~~~~~~~~~~~~~  137 (144)
T PRK15359        123 YADASWSEIRQNAQI  137 (144)
T ss_pred             CCChHHHHHHHHHHH
Confidence            999999999987754

>TIGR00115 tig trigger factor

Probab=98.45  E-value=1.7e-06  Score=88.93  Aligned_cols=87  Identities=17%  Similarity=0.340  Sum_probs=75.1

Q ss_pred             CCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCCccCCcccccccc
Q 011003          285 RPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELA  364 (496)
Q Consensus       285 ~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~  364 (496)
                      .+..||.|.++|.+.. +|..|+++    ...++.|.+|.+.+++||+.+|.+|++|+++.|.++....|+....     
T Consensus       146 ~~~~gD~V~v~~~~~~-dg~~~~~~----~~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~-----  215 (408)
T TIGR00115       146 AAEKGDRVTIDFEGFI-DGEAFEGG----KAENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL-----  215 (408)
T ss_pred             ccCCCCEEEEEEEEEE-CCEECcCC----CCCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC-----
Confidence            4678999999999976 88888654    4678999999999999999999999999999999998878875432     


Q ss_pred             CCCCCCeEEEEEEEeeeecc
Q 011003          365 VVPPNSTVHYEVELVSFEKE  384 (496)
Q Consensus       365 ~ip~~~~l~f~v~l~~~~~~  384 (496)
                         +|.++.|+|+|.++...
T Consensus       216 ---~gk~~~f~v~i~~I~~~  232 (408)
T TIGR00115       216 ---AGKEATFKVTVKEVKEK  232 (408)
T ss_pred             ---CCCeEEEEEEEEEeccC
Confidence               57899999999999863

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=3.7e-08  Score=89.51  Aligned_cols=114  Identities=26%  Similarity=0.390  Sum_probs=88.9

Q ss_pred             cCCCeEEEEEEcccCCCCC--CCCCEEEEEEEEEEcC--CCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEE
Q 011003           35 GNQGLKKKLVKEGEGWDTP--ENGDEVEVHYTGTLLD--GTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV  110 (496)
Q Consensus        35 ~~~g~~~~~l~~G~G~~~~--~~gd~V~v~Y~~~~~d--g~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~  110 (496)
                      .-.||+++|+..|.| +-|  ..|..|.+||.....+  ++++|+|+..|+|+.+++|.-.-++-||..|..|+++|.+.
T Consensus         8 ~~~gv~Kril~~G~g-~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~Evaq   86 (329)
T KOG0545|consen    8 NVEGVKKRILHGGTG-ELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVAQ   86 (329)
T ss_pred             cchhhhHhhccCCCc-cCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHHH
Confidence            446899999999999 555  5899999999987764  56899999999999999999999999999999999999988


Q ss_pred             EEecCCc--------------ccCC-----------------------CCCCCCCCCCCceEEEEEEEEEeeccee
Q 011003          111 FTIPPEL--------------AYGE-----------------------SGSPPTIPPNATLQFDVELLSWTSVKDI  149 (496)
Q Consensus       111 i~ip~~~--------------ayg~-----------------------~~~~~~ip~~~~l~~~v~l~~~~~~~~~  149 (496)
                      |++.-..              +-|.                       .+......-.++|+|.|+|+.+..+.++
T Consensus        87 F~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qY  162 (329)
T KOG0545|consen   87 FWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQY  162 (329)
T ss_pred             hhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhh
Confidence            8664321              1121                       1111112234789999999999876654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.42  E-value=1.5e-07  Score=94.07  Aligned_cols=88  Identities=20%  Similarity=0.073  Sum_probs=79.6

Q ss_pred             HHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhc---cCHHHHHH
Q 011003          393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL---KDYKQAEK  469 (496)
Q Consensus       393 ~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl---~~~~~Ai~  469 (496)
                      -+..+.+++.|.+||..|-.+.+..|+..|++++.+               .+....+|.|||++++|.   ++.-.|+.
T Consensus       368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~---------------~~~~~~~l~nraa~lmkRkW~~d~~~Alr  432 (758)
T KOG1310|consen  368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQY---------------VPDAIYLLENRAAALMKRKWRGDSYLALR  432 (758)
T ss_pred             hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhh---------------ccchhHHHHhHHHHHHhhhccccHHHHHH
Confidence            356678899999999999999999999999999998               556689999999999995   57789999


Q ss_pred             HHHHHhcccCCCcchhcccccccccc
Q 011003          470 LCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       470 ~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      ||..||++||...|||||.++|+..|
T Consensus       433 Dch~Alrln~s~~kah~~la~aL~el  458 (758)
T KOG1310|consen  433 DCHVALRLNPSIQKAHFRLARALNEL  458 (758)
T ss_pred             hHHhhccCChHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998654

>PRK01490 tig trigger factor; Provisional

Probab=98.32  E-value=5.1e-06  Score=86.15  Aligned_cols=87  Identities=15%  Similarity=0.359  Sum_probs=74.3

Q ss_pred             CCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCCccCCcccccccc
Q 011003          285 RPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELA  364 (496)
Q Consensus       285 ~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~  364 (496)
                      .+..||.|.++|.+.. +|..|+.+    ...++.|.+|.+.+++||+.+|.+|++|+++.|.++....|+....     
T Consensus       157 ~~~~gD~V~vd~~~~~-~g~~~~~~----~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l-----  226 (435)
T PRK01490        157 PAENGDRVTIDFVGSI-DGEEFEGG----KAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL-----  226 (435)
T ss_pred             cCCCCCEEEEEEEEEE-CCEECcCC----CCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC-----
Confidence            4688999999999997 78887654    4578999999999999999999999999999999988777765332     


Q ss_pred             CCCCCCeEEEEEEEeeeecc
Q 011003          365 VVPPNSTVHYEVELVSFEKE  384 (496)
Q Consensus       365 ~ip~~~~l~f~v~l~~~~~~  384 (496)
                         +|..+.|.|+|.++...
T Consensus       227 ---agk~~~f~v~v~~V~~~  243 (435)
T PRK01490        227 ---AGKEATFKVTVKEVKEK  243 (435)
T ss_pred             ---CCCeEEEEEEEEEeccC
Confidence               57889999999999863

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.32  E-value=3.2e-07  Score=68.62  Aligned_cols=66  Identities=26%  Similarity=0.263  Sum_probs=56.5

Q ss_pred             hHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccc
Q 011003          409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSD  488 (496)
Q Consensus       409 ~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rr  488 (496)
                      +++.|+|.+|++.|++++...+.               ...++.++|.||+++|++.+|...+++++..+|++...+.-+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~   65 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPD---------------NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL   65 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTT---------------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            57899999999999999998443               478888999999999999999999999999999986665444


Q ss_pred             c
Q 011003          489 G  489 (496)
Q Consensus       489 g  489 (496)
                      |
T Consensus        66 a   66 (68)
T PF14559_consen   66 A   66 (68)
T ss_dssp             H
T ss_pred             h
Confidence            3

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.29  E-value=1.1e-06  Score=66.62  Aligned_cols=68  Identities=18%  Similarity=0.196  Sum_probs=60.8

Q ss_pred             hhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhc
Q 011003          407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIH  486 (496)
Q Consensus       407 n~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~  486 (496)
                      +.++++++|..|+..+.+++.+               .+....++.++|.|+.++|+|.+|+.+++++|+.+|++..+..
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~---------------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~   67 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALEL---------------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA   67 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHh---------------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence            5678999999999999999998               4445889999999999999999999999999999999988765


Q ss_pred             ccc
Q 011003          487 SDG  489 (496)
Q Consensus       487 rrg  489 (496)
                      -++
T Consensus        68 ~~a   70 (73)
T PF13371_consen   68 LRA   70 (73)
T ss_pred             HHH
Confidence            544

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.27  E-value=3.6e-06  Score=64.78  Aligned_cols=74  Identities=22%  Similarity=0.236  Sum_probs=61.2

Q ss_pred             HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE  476 (496)
Q Consensus       397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  476 (496)
                      ..+..+...|..++..|+|++|+..|++|+++......        -.+....++.|+|.||..+|++++|+..+++|++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD--------DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT--------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            45667788999999999999999999999998433211        1445588999999999999999999999999998


Q ss_pred             cc
Q 011003          477 SS  478 (496)
Q Consensus       477 ~d  478 (496)
                      +.
T Consensus        75 i~   76 (78)
T PF13424_consen   75 IF   76 (78)
T ss_dssp             HH
T ss_pred             hh
Confidence            63

...

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.26  E-value=1.1e-06  Score=75.41  Aligned_cols=81  Identities=17%  Similarity=0.197  Sum_probs=65.1

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      .......|..+++.++|.+|++.|++++...+               ....++.|+|.|++++++|.+|+..++++++++
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDP---------------YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD   81 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC---------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            34567888999999999999999999988733               236777788888888888888888888888888


Q ss_pred             CCCcchhccccccccc
Q 011003          479 VQKGSGIHSDGRFRFG  494 (496)
Q Consensus       479 p~~~Ka~~rrg~a~~~  494 (496)
                      |++...+|.+|.++..
T Consensus        82 p~~~~~~~~la~~~~~   97 (135)
T TIGR02552        82 PDDPRPYFHAAECLLA   97 (135)
T ss_pred             CCChHHHHHHHHHHHH
Confidence            8888888888877654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.14  E-value=2.6e-06  Score=83.67  Aligned_cols=81  Identities=12%  Similarity=-0.018  Sum_probs=67.4

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +.-+-.+|..+...|++.+|+..|++|+++-               +....+|+|++.++..+++|.+|+..++++|+++
T Consensus        64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~---------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~  128 (296)
T PRK11189         64 AQLHYERGVLYDSLGLRALARNDFSQALALR---------------PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD  128 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            3446678999999999999999999999983               3336788888888888888888888888888888


Q ss_pred             CCCcchhccccccccc
Q 011003          479 VQKGSGIHSDGRFRFG  494 (496)
Q Consensus       479 p~~~Ka~~rrg~a~~~  494 (496)
                      |++..+|+++|.+++.
T Consensus       129 P~~~~a~~~lg~~l~~  144 (296)
T PRK11189        129 PTYNYAYLNRGIALYY  144 (296)
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            8888888888877653

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.14  E-value=5.8e-06  Score=68.24  Aligned_cols=86  Identities=16%  Similarity=0.064  Sum_probs=72.8

Q ss_pred             HHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHH
Q 011003          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (496)
Q Consensus       394 e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~  473 (496)
                      ..++....+.-+|..+-..|+...|+++|.+||.+++.               +.++|+|||+++.-.++..+|+++.++
T Consensus        38 ~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~---------------raSayNNRAQa~RLq~~~e~ALdDLn~  102 (175)
T KOG4555|consen   38 QAIKASRELELKAIALAEAGDLDGALELFGQALCLAPE---------------RASAYNNRAQALRLQGDDEEALDDLNK  102 (175)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccc---------------chHhhccHHHHHHHcCChHHHHHHHHH
Confidence            45777788888999999999999999999999999544               489999999999999999999999999


Q ss_pred             HhcccCCCc----chhccccccccc
Q 011003          474 KCESSVQKG----SGIHSDGRFRFG  494 (496)
Q Consensus       474 al~~dp~~~----Ka~~rrg~a~~~  494 (496)
                      ||++-..-.    .||..||..|+.
T Consensus       103 AleLag~~trtacqa~vQRg~lyRl  127 (175)
T KOG4555|consen  103 ALELAGDQTRTACQAFVQRGLLYRL  127 (175)
T ss_pred             HHHhcCccchHHHHHHHHHHHHHHH
Confidence            999975544    366666665543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.12  E-value=2.9e-06  Score=53.90  Aligned_cols=33  Identities=18%  Similarity=0.237  Sum_probs=30.3

Q ss_pred             HhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003          449 ACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK  481 (496)
Q Consensus       449 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~  481 (496)
                      .+|.|+|.||+.+++|.+|+.+|++||+++|+|
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            578999999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.09  E-value=7.1e-06  Score=73.76  Aligned_cols=88  Identities=18%  Similarity=0.092  Sum_probs=74.2

Q ss_pred             HHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHH
Q 011003          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKK  474 (496)
Q Consensus       395 ~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  474 (496)
                      +...+..+...|..++..|+|.+|+..|.++++.....            .....++.|+|.++.++++|.+|+..+.++
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a   98 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP------------NDRSYILYNMGIIYASNGEHDKALEYYHQA   98 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc------------chHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            44566677889999999999999999999999863221            112568899999999999999999999999


Q ss_pred             hcccCCCcchhccccccccc
Q 011003          475 CESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       475 l~~dp~~~Ka~~rrg~a~~~  494 (496)
                      ++++|++..+++.+|.++..
T Consensus        99 l~~~p~~~~~~~~lg~~~~~  118 (172)
T PRK02603         99 LELNPKQPSALNNIAVIYHK  118 (172)
T ss_pred             HHhCcccHHHHHHHHHHHHH
Confidence            99999999999888877654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.04  E-value=2e-06  Score=64.53  Aligned_cols=48  Identities=15%  Similarity=0.060  Sum_probs=45.1

Q ss_pred             HHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003          448 VACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       448 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      +..|.++|.+++++++|.+|+.+++++|+++|+++.+|+++|.++..+
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~   50 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKL   50 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence            567899999999999999999999999999999999999999998764

...

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.99  E-value=1.6e-05  Score=71.19  Aligned_cols=86  Identities=13%  Similarity=-0.000  Sum_probs=72.6

Q ss_pred             HHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHh
Q 011003          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKC  475 (496)
Q Consensus       396 ~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  475 (496)
                      ...+..+...|..++..++|.+|+..|.+|+.+...            ......++.|+|.++.+++++.+|+..|.+|+
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~------------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al   99 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID------------PYDRSYILYNIGLIHTSNGEHTKALEYYFQAL   99 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc------------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345677778899999999999999999999987432            11234589999999999999999999999999


Q ss_pred             cccCCCcchhcccccccc
Q 011003          476 ESSVQKGSGIHSDGRFRF  493 (496)
Q Consensus       476 ~~dp~~~Ka~~rrg~a~~  493 (496)
                      +++|.+..+++.+|.++.
T Consensus       100 ~~~~~~~~~~~~la~i~~  117 (168)
T CHL00033        100 ERNPFLPQALNNMAVICH  117 (168)
T ss_pred             HhCcCcHHHHHHHHHHHH
Confidence            999999988888877665

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.99  E-value=2.7e-06  Score=66.61  Aligned_cols=70  Identities=23%  Similarity=0.194  Sum_probs=59.7

Q ss_pred             cccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccc
Q 011003          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRF  491 (496)
Q Consensus       412 ~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a  491 (496)
                      +++|+.|+..|.+++..-+.            ++ ....+.++|.||+++++|.+|+..+++ ++.++.+..++|-.|+|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~------------~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~   67 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPT------------NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARC   67 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCG------------TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCC------------Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence            58999999999999997432            11 466788899999999999999999999 99999999999999999


Q ss_pred             cccc
Q 011003          492 RFGR  495 (496)
Q Consensus       492 ~~~l  495 (496)
                      ++.+
T Consensus        68 ~~~l   71 (84)
T PF12895_consen   68 LLKL   71 (84)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            8765

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=6.1e-05  Score=77.12  Aligned_cols=85  Identities=18%  Similarity=0.348  Sum_probs=68.7

Q ss_pred             CCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCCccCCccccccccC
Q 011003          286 PNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAV  365 (496)
Q Consensus       286 p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~  365 (496)
                      ...||+|+|+|.|.. ||..|..    .....+.|.+|.|+++|||+.+|.||+.||...|.+.....|.....      
T Consensus       158 a~~gD~v~IDf~g~i-Dg~~feg----g~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L------  226 (441)
T COG0544         158 AENGDRVTIDFEGSV-DGEEFEG----GKAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL------  226 (441)
T ss_pred             cccCCEEEEEEEEEE-cCeeccC----ccccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh------
Confidence            788999999999954 7777754    35778999999999999999999999999998865544444443322      


Q ss_pred             CCCCCeEEEEEEEeeeec
Q 011003          366 VPPNSTVHYEVELVSFEK  383 (496)
Q Consensus       366 ip~~~~l~f~v~l~~~~~  383 (496)
                        .|....|.|+|..+..
T Consensus       227 --aGK~a~F~V~vkeVk~  242 (441)
T COG0544         227 --AGKEATFKVKVKEVKK  242 (441)
T ss_pred             --CCCceEEEEEEEEEee
Confidence              4678999999999985

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.96  E-value=8e-06  Score=82.25  Aligned_cols=78  Identities=14%  Similarity=0.144  Sum_probs=69.2

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp  479 (496)
                      ..+..+|..+++.|+|.+|+..|.+|+++               ++....+|+++|.+|+++|+|.+|+.+++++|+++|
T Consensus        37 ~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---------------~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P  101 (356)
T PLN03088         37 ELYADRAQANIKLGNFTEAVADANKAIEL---------------DPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAP  101 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence            44567888999999999999999999998               344477899999999999999999999999999999


Q ss_pred             CCcchhccccccc
Q 011003          480 QKGSGIHSDGRFR  492 (496)
Q Consensus       480 ~~~Ka~~rrg~a~  492 (496)
                      ++..+..+.++|.
T Consensus       102 ~~~~~~~~l~~~~  114 (356)
T PLN03088        102 GDSRFTKLIKECD  114 (356)
T ss_pred             CCHHHHHHHHHHH
Confidence            9999888877664

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.94  E-value=1.7e-05  Score=67.55  Aligned_cols=83  Identities=14%  Similarity=0.131  Sum_probs=69.7

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp  479 (496)
                      ..+-.+|...+++|+|..|+..++....-++.            .+....+.++++-+|++.++|.+|+..+++-|+++|
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~------------g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP   78 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPF------------GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP   78 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            35667888999999999999999887776544            233356778999999999999999999999999999


Q ss_pred             CCcc---hhccccccccc
Q 011003          480 QKGS---GIHSDGRFRFG  494 (496)
Q Consensus       480 ~~~K---a~~rrg~a~~~  494 (496)
                      +|++   |||++|.+++.
T Consensus        79 ~hp~vdYa~Y~~gL~~~~   96 (142)
T PF13512_consen   79 THPNVDYAYYMRGLSYYE   96 (142)
T ss_pred             CCCCccHHHHHHHHHHHH
Confidence            9987   88999977654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.88  E-value=3.5e-05  Score=73.16  Aligned_cols=80  Identities=10%  Similarity=0.051  Sum_probs=68.4

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .+-.+|..++++|+|.+|+..|++.+...+..            +.......++|.+|+++++|.+|+..+++.+++.|+
T Consensus        34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s------------~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~  101 (243)
T PRK10866         34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFG------------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT  101 (243)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence            35578889999999999999999999976542            344555789999999999999999999999999998


Q ss_pred             Ccc---hhccccccc
Q 011003          481 KGS---GIHSDGRFR  492 (496)
Q Consensus       481 ~~K---a~~rrg~a~  492 (496)
                      |.+   |+|.+|.++
T Consensus       102 ~~~~~~a~Y~~g~~~  116 (243)
T PRK10866        102 HPNIDYVLYMRGLTN  116 (243)
T ss_pred             CCchHHHHHHHHHhh
Confidence            865   789999775

>PRK15331 chaperone protein SicA; Provisional

Probab=97.87  E-value=2.4e-05  Score=68.06  Aligned_cols=83  Identities=11%  Similarity=0.074  Sum_probs=73.2

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      ..+.+-..|-.+|.+|+|.+|...|+-...+               +......+..+|+|+..+++|++|+..+..|..+
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~---------------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l  100 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIY---------------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL  100 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3556777899999999999999999877765               3344667899999999999999999999999999


Q ss_pred             cCCCcchhcccccccccc
Q 011003          478 SVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       478 dp~~~Ka~~rrg~a~~~l  495 (496)
                      +++++...|+.|+|++.+
T Consensus       101 ~~~dp~p~f~agqC~l~l  118 (165)
T PRK15331        101 LKNDYRPVFFTGQCQLLM  118 (165)
T ss_pred             ccCCCCccchHHHHHHHh
Confidence            999999999999999876

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.86  E-value=1.5e-05  Score=62.06  Aligned_cols=78  Identities=26%  Similarity=0.258  Sum_probs=66.8

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK  481 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~  481 (496)
                      +...|..++..|++.+|+..+.++++..+..               ..++.++|.|+...+++.+|+..+++++.+.|.+
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   67 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDN---------------ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN   67 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            4567888899999999999999999874322               3678899999999999999999999999999999


Q ss_pred             cchhccccccccc
Q 011003          482 GSGIHSDGRFRFG  494 (496)
Q Consensus       482 ~Ka~~rrg~a~~~  494 (496)
                      ..+++..|.++..
T Consensus        68 ~~~~~~~~~~~~~   80 (100)
T cd00189          68 AKAYYNLGLAYYK   80 (100)
T ss_pred             hhHHHHHHHHHHH
Confidence            8888888876643

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.84  E-value=2.4e-05  Score=80.09  Aligned_cols=51  Identities=6%  Similarity=-0.188  Sum_probs=46.7

Q ss_pred             HHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccc
Q 011003          443 AKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRF  493 (496)
Q Consensus       443 ~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~  493 (496)
                      +++..+.+++|+|..|--.|+..+||..+..||+++|+.+.|+..++.|+.
T Consensus       451 ~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq  501 (966)
T KOG4626|consen  451 INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ  501 (966)
T ss_pred             cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence            378889999999999999999999999999999999999999999887753

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.84  E-value=3.6e-05  Score=72.79  Aligned_cols=85  Identities=16%  Similarity=0.175  Sum_probs=72.5

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      .+..+...|..+++.|+|..|+..|.++++..+..            +.....+.++|.||+++++|.+|+..++++++.
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~------------~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~   99 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS------------PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL   99 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            34567789999999999999999999999875432            233567899999999999999999999999999


Q ss_pred             cCCCcc---hhccccccccc
Q 011003          478 SVQKGS---GIHSDGRFRFG  494 (496)
Q Consensus       478 dp~~~K---a~~rrg~a~~~  494 (496)
                      +|++..   ++|.+|.++..
T Consensus       100 ~p~~~~~~~a~~~~g~~~~~  119 (235)
T TIGR03302       100 HPNHPDADYAYYLRGLSNYN  119 (235)
T ss_pred             CcCCCchHHHHHHHHHHHHH
Confidence            999987   79998887754

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.82  E-value=2.3e-05  Score=72.10  Aligned_cols=81  Identities=11%  Similarity=0.027  Sum_probs=57.7

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHH-HhccC--HHHHHHHHHHHh
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK-LKLKD--YKQAEKLCTKKC  475 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~-~kl~~--~~~Ai~~~~~al  475 (496)
                      +..+...|..+...|+|..|+..|.+|+++-+.               ...++.|+|.|+ ...++  +.+|+..++++|
T Consensus        73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~---------------~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al  137 (198)
T PRK10370         73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGE---------------NAELYAALATVLYYQAGQHMTPQTREMIDKAL  137 (198)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            445667788899999999999999999998433               366666666663 45555  366777777777


Q ss_pred             cccCCCcchhccccccccc
Q 011003          476 ESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       476 ~~dp~~~Ka~~rrg~a~~~  494 (496)
                      +++|++..+++.+|.+++.
T Consensus       138 ~~dP~~~~al~~LA~~~~~  156 (198)
T PRK10370        138 ALDANEVTALMLLASDAFM  156 (198)
T ss_pred             HhCCCChhHHHHHHHHHHH
Confidence            7777777666666655543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.82  E-value=3.3e-05  Score=64.21  Aligned_cols=82  Identities=13%  Similarity=0.069  Sum_probs=55.2

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .+-..|..+++.|+|.+|+..|.++++..+.+            .....++.+++.++++.++|.+|+..+.+++..+|+
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~   71 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKS------------TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK   71 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc------------cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC
Confidence            34567777888888888888888887753221            122445667777777777777777777777777766


Q ss_pred             C---cchhccccccccc
Q 011003          481 K---GSGIHSDGRFRFG  494 (496)
Q Consensus       481 ~---~Ka~~rrg~a~~~  494 (496)
                      +   ..+++..|.++..
T Consensus        72 ~~~~~~~~~~~~~~~~~   88 (119)
T TIGR02795        72 SPKAPDALLKLGMSLQE   88 (119)
T ss_pred             CCcccHHHHHHHHHHHH
Confidence            5   3456666666543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.82  E-value=3e-05  Score=49.00  Aligned_cols=33  Identities=15%  Similarity=0.118  Sum_probs=30.3

Q ss_pred             HhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003          449 ACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK  481 (496)
Q Consensus       449 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~  481 (496)
                      .++.++|.+++++++|++|+.+++++++++|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            568899999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.76  E-value=3.6e-05  Score=77.38  Aligned_cols=71  Identities=20%  Similarity=0.247  Sum_probs=60.0

Q ss_pred             HHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHH
Q 011003          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKK  474 (496)
Q Consensus       395 ~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  474 (496)
                      ....+..+...|+.+|+.|+|++|+..|++||++-+.+            .....+|+|+|.||.+++++++|+.++.+|
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~------------aeA~~A~yNLAcaya~LGr~dEAla~LrrA  138 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNP------------DEAQAAYYNKACCHAYREEGKKAADCLRTA  138 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34556777889999999999999999999999984432            111256999999999999999999999999


Q ss_pred             hcc
Q 011003          475 CES  477 (496)
Q Consensus       475 l~~  477 (496)
                      |++
T Consensus       139 Lel  141 (453)
T PLN03098        139 LRD  141 (453)
T ss_pred             HHh
Confidence            998

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.74  E-value=3.4e-05  Score=83.89  Aligned_cols=95  Identities=15%  Similarity=0.047  Sum_probs=64.7

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCC-----------CCCh-H-------HHHHHHHHHHHhhhHHHHHHHh
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-----------SFGD-E-------EKKQAKALKVACNLNNAACKLK  460 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~-----------~~~~-~-------~~~~~~~~~~~~~~N~a~~~~k  460 (496)
                      ..+...|..++..|++.+|+..|.++++.-+...           ...+ +       ...+.++....++.+++.+++.
T Consensus       332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~  411 (615)
T TIGR00990       332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI  411 (615)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            3456677888889999999999999987633211           0000 0       0012233346677788888888


Q ss_pred             ccCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003          461 LKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       461 l~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~  494 (496)
                      +|+|.+|+.+++++|+++|++..+++.+|.++..
T Consensus       412 ~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~  445 (615)
T TIGR00990       412 KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK  445 (615)
T ss_pred             cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH
Confidence            8888888888888888888888888877777654

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.73  E-value=3.8e-05  Score=73.52  Aligned_cols=82  Identities=18%  Similarity=0.136  Sum_probs=61.7

Q ss_pred             HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE  476 (496)
Q Consensus       397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  476 (496)
                      ..+++..+.|++++.+++|..|+-.|..|++.               ++.....+..||.+|+.+|+-+.|+.|.+++|+
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~---------------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle  100 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG---------------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE  100 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC---------------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh
Confidence            34678889999999999999999999999987               555556666666666666666666666666666


Q ss_pred             ccCCCcchhcccccccc
Q 011003          477 SSVQKGSGIHSDGRFRF  493 (496)
Q Consensus       477 ~dp~~~Ka~~rrg~a~~  493 (496)
                      +.|+..-|...||..++
T Consensus       101 lKpDF~~ARiQRg~vll  117 (504)
T KOG0624|consen  101 LKPDFMAARIQRGVVLL  117 (504)
T ss_pred             cCccHHHHHHHhchhhh
Confidence            66666666666665554

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.71  E-value=4.8e-05  Score=78.00  Aligned_cols=93  Identities=13%  Similarity=0.055  Sum_probs=68.7

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCC--------------CChH-----HHHHHHHHHHHhhhHHHHHHHhc
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS--------------FGDE-----EKKQAKALKVACNLNNAACKLKL  461 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~--------------~~~~-----~~~~~~~~~~~~~~N~a~~~~kl  461 (496)
                      .+-..||.+-..|+..+|.++|.+||+++.....              ..+.     ..-++.+..+..++|+|..|-.+
T Consensus       322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqq  401 (966)
T KOG4626|consen  322 AYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQ  401 (966)
T ss_pred             HHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhc
Confidence            4445566666668888888888888887643211              0110     11234556688899999999999


Q ss_pred             cCHHHHHHHHHHHhcccCCCcchhcccccccc
Q 011003          462 KDYKQAEKLCTKKCESSVQKGSGIHSDGRFRF  493 (496)
Q Consensus       462 ~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~  493 (496)
                      |++++|+.++.+||+++|..+.||-.+|..|.
T Consensus       402 gnl~~Ai~~YkealrI~P~fAda~~NmGnt~k  433 (966)
T KOG4626|consen  402 GNLDDAIMCYKEALRIKPTFADALSNMGNTYK  433 (966)
T ss_pred             ccHHHHHHHHHHHHhcCchHHHHHHhcchHHH
Confidence            99999999999999999999999999887653

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.70  E-value=4.5e-05  Score=51.56  Aligned_cols=43  Identities=16%  Similarity=0.098  Sum_probs=39.8

Q ss_pred             HhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccc
Q 011003          449 ACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRF  491 (496)
Q Consensus       449 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a  491 (496)
                      .++.++|.+|..+|++++|++.++++|+.+|+|..+|+..|++
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL   44 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence            3578999999999999999999999999999999999998864

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.65  E-value=2.3e-05  Score=74.91  Aligned_cols=89  Identities=11%  Similarity=0.126  Sum_probs=67.8

Q ss_pred             HHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHH
Q 011003          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKK  474 (496)
Q Consensus       395 ~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  474 (496)
                      +++.+.+..+.+.+....++|.+++..+++.++.-+..           ...+...+--+|.||.+-+++.+||..|+++
T Consensus       265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~-----------~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev  333 (504)
T KOG0624|consen  265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEE-----------TMIRYNGFRVLCTCYREDEQFGEAIQQCKEV  333 (504)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcc-----------cceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence            45667777888999999999999999999999862221           2223344445677888888888888888888


Q ss_pred             hcccCCCcchhccccccccc
Q 011003          475 CESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       475 l~~dp~~~Ka~~rrg~a~~~  494 (496)
                      |+++|+++.+|..||.||++
T Consensus       334 L~~d~~dv~~l~dRAeA~l~  353 (504)
T KOG0624|consen  334 LDIDPDDVQVLCDRAEAYLG  353 (504)
T ss_pred             HhcCchHHHHHHHHHHHHhh
Confidence            88888888888888888764

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.61  E-value=7.8e-05  Score=63.79  Aligned_cols=70  Identities=16%  Similarity=-0.006  Sum_probs=60.9

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp  479 (496)
                      ..+...|..+++.++|.+|+..|.++++..+               .....+.++|.||+.++++.+|+..++++++++|
T Consensus        52 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  116 (135)
T TIGR02552        52 RYWLGLAACCQMLKEYEEAIDAYALAAALDP---------------DDPRPYFHAAECLLALGEPESALKALDLAIEICG  116 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            3445678888999999999999999998733               3377889999999999999999999999999999


Q ss_pred             CCcch
Q 011003          480 QKGSG  484 (496)
Q Consensus       480 ~~~Ka  484 (496)
                      ++.+.
T Consensus       117 ~~~~~  121 (135)
T TIGR02552       117 ENPEY  121 (135)
T ss_pred             ccchH
Confidence            98773

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.60  E-value=8.3e-05  Score=68.73  Aligned_cols=84  Identities=17%  Similarity=0.119  Sum_probs=67.9

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+-..|..+|..|+|.+|+..|++.+...+..            +....+.+.+|.|+++.++|.+|+..+++.++..
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s------------~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y   72 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNS------------PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY   72 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            4567789999999999999999999999876653            2335667899999999999999999999999999


Q ss_pred             CCCcc---hhccccccccc
Q 011003          479 VQKGS---GIHSDGRFRFG  494 (496)
Q Consensus       479 p~~~K---a~~rrg~a~~~  494 (496)
                      |++.+   |+|++|.+++.
T Consensus        73 P~~~~~~~A~Y~~g~~~~~   91 (203)
T PF13525_consen   73 PNSPKADYALYMLGLSYYK   91 (203)
T ss_dssp             TT-TTHHHHHHHHHHHHHH
T ss_pred             CCCcchhhHHHHHHHHHHH
Confidence            99865   89999988654

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.55  E-value=0.00013  Score=64.89  Aligned_cols=77  Identities=18%  Similarity=0.145  Sum_probs=66.5

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +.-+-.+|..+.|.+.++.|+...++||.+               .+.+..++.-||.+|-++..|.+|+.|+.+++++|
T Consensus       134 sIly~Nraaa~iKl~k~e~aI~dcsKaiel---------------~pty~kAl~RRAeayek~ek~eealeDyKki~E~d  198 (271)
T KOG4234|consen  134 SILYSNRAAALIKLRKWESAIEDCSKAIEL---------------NPTYEKALERRAEAYEKMEKYEEALEDYKKILESD  198 (271)
T ss_pred             HHHHhhhHHHHHHhhhHHHHHHHHHhhHhc---------------CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence            445567888999999999999999999998               66778888899999999999999999999999999


Q ss_pred             CCCcchhccccccc
Q 011003          479 VQKGSGIHSDGRFR  492 (496)
Q Consensus       479 p~~~Ka~~rrg~a~  492 (496)
                      |.+-.|  |+|.++
T Consensus       199 Ps~~ea--r~~i~r  210 (271)
T KOG4234|consen  199 PSRREA--REAIAR  210 (271)
T ss_pred             cchHHH--HHHHHh
Confidence            988743  555544

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.53  E-value=5e-05  Score=80.26  Aligned_cols=93  Identities=27%  Similarity=0.358  Sum_probs=83.9

Q ss_pred             ChHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHh--ccCHHHHH
Q 011003          391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK--LKDYKQAE  468 (496)
Q Consensus       391 ~~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~k--l~~~~~Ai  468 (496)
                      +...-+..+...+++||.+|.+++|..|.-.|..++.+++.+           +.....+++|++.|++.  +++|.+++
T Consensus        45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~-----------~~~~a~~~~~~~s~~m~~~l~~~~~~~  113 (748)
T KOG4151|consen   45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKD-----------HHVVATLRSNQASCYMQLGLGEYPKAI  113 (748)
T ss_pred             chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheecccc-----------chhhhhHHHHHHHHHhhcCccchhhhc
Confidence            456778889999999999999999999999999999998765           56678999999999986  67899999


Q ss_pred             HHHHHHhcccCCCcchhccccccccc
Q 011003          469 KLCTKKCESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       469 ~~~~~al~~dp~~~Ka~~rrg~a~~~  494 (496)
                      .+|+-|+...|...+++++|+.+|..
T Consensus       114 ~E~~la~~~~p~i~~~Ll~r~~~y~a  139 (748)
T KOG4151|consen  114 PECELALESQPRISKALLKRARKYEA  139 (748)
T ss_pred             CchhhhhhccchHHHHHhhhhhHHHH
Confidence            99999999999999999999988754

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.49  E-value=0.00016  Score=67.01  Aligned_cols=80  Identities=16%  Similarity=0.146  Sum_probs=54.0

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+...|..++..|+|.+|+..|.++++..+.               ...++.+++.++..++++.+|+..++++++++
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~   95 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD---------------DYLAYLALALYYQQLGELEKAEDSFRRALTLN   95 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            455556788888888888888888888876322               24456666666666666666666666666666


Q ss_pred             CCCcchhcccccccc
Q 011003          479 VQKGSGIHSDGRFRF  493 (496)
Q Consensus       479 p~~~Ka~~rrg~a~~  493 (496)
                      |++..+++..|.+++
T Consensus        96 ~~~~~~~~~~~~~~~  110 (234)
T TIGR02521        96 PNNGDVLNNYGTFLC  110 (234)
T ss_pred             CCCHHHHHHHHHHHH
Confidence            666666665555443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.48  E-value=9.3e-05  Score=75.50  Aligned_cols=77  Identities=13%  Similarity=-0.051  Sum_probs=70.2

Q ss_pred             hhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcch
Q 011003          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSG  484 (496)
Q Consensus       405 ~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka  484 (496)
                      -|.-++-.++|++|+.+|+.||..               ++....+|+-+++++..-.+..+||..+++||+|.|..+.+
T Consensus       436 LGVLy~ls~efdraiDcf~~AL~v---------------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~  500 (579)
T KOG1125|consen  436 LGVLYNLSGEFDRAVDCFEAALQV---------------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRV  500 (579)
T ss_pred             hHHHHhcchHHHHHHHHHHHHHhc---------------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeee
Confidence            566788899999999999999998               66668999999999999999999999999999999999999


Q ss_pred             hccccccccccC
Q 011003          485 IHSDGRFRFGRV  496 (496)
Q Consensus       485 ~~rrg~a~~~l~  496 (496)
                      .|..|.+++.|+
T Consensus       501 RyNlgIS~mNlG  512 (579)
T KOG1125|consen  501 RYNLGISCMNLG  512 (579)
T ss_pred             ehhhhhhhhhhh
Confidence            999999988763

>PRK11189 lipoprotein NlpI; Provisional

Probab=97.44  E-value=0.00021  Score=70.14  Aligned_cols=69  Identities=14%  Similarity=0.097  Sum_probs=61.7

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+...|..+...|+|..|+..|.+|+++               ++.....+.|++.++..+++|.+|+.+++++++++
T Consensus        98 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~  162 (296)
T PRK11189         98 ADAYNYLGIYLTQAGNFDAAYEAFDSVLEL---------------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD  162 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            345667899999999999999999999998               33347789999999999999999999999999999


Q ss_pred             CCCc
Q 011003          479 VQKG  482 (496)
Q Consensus       479 p~~~  482 (496)
                      |++.
T Consensus       163 P~~~  166 (296)
T PRK11189        163 PNDP  166 (296)
T ss_pred             CCCH
Confidence            9986

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.44  E-value=0.00028  Score=66.83  Aligned_cols=64  Identities=20%  Similarity=0.175  Sum_probs=59.5

Q ss_pred             HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCc
Q 011003          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKG  482 (496)
Q Consensus       404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~  482 (496)
                      .++-.+.+.|.|..|++-..+||.+               ++....+|.-++.+|+-+++|.+|++.+.+||++||+|.
T Consensus       120 NRAAAy~~Lg~~~~AVkDce~Al~i---------------Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne  183 (304)
T KOG0553|consen  120 NRAAAYSKLGEYEDAVKDCESALSI---------------DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE  183 (304)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhc---------------ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence            5677778899999999999999998               888899999999999999999999999999999999996

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.43  E-value=0.00021  Score=70.23  Aligned_cols=92  Identities=10%  Similarity=0.109  Sum_probs=76.0

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCC---ChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---GDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~---~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      ....|...|++++|..|+..|..||++++.-...   .......+..+..-+...++.||+++++..-|+.+.-+.|.++
T Consensus       179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln  258 (569)
T PF15015_consen  179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN  258 (569)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence            3457889999999999999999999998653222   2234455566777788899999999999999999999999999


Q ss_pred             CCCcchhcccccccc
Q 011003          479 VQKGSGIHSDGRFRF  493 (496)
Q Consensus       479 p~~~Ka~~rrg~a~~  493 (496)
                      |.+..-+.|+|-+.+
T Consensus       259 P~~frnHLrqAavfR  273 (569)
T PF15015_consen  259 PSYFRNHLRQAAVFR  273 (569)
T ss_pred             cchhhHHHHHHHHHH
Confidence            999999998886654

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.43  E-value=0.00016  Score=50.67  Aligned_cols=37  Identities=22%  Similarity=0.327  Sum_probs=31.8

Q ss_pred             hhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhc
Q 011003          450 CNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIH  486 (496)
Q Consensus       450 ~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~  486 (496)
                      ++..+|.++.|+++|.+|...|+.+|+++|+|..|.-
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~   39 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS   39 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            5678999999999999999999999999999987643

>PRK12370 invasion protein regulator; Provisional

Probab=97.37  E-value=0.00022  Score=76.36  Aligned_cols=71  Identities=7%  Similarity=-0.062  Sum_probs=56.4

Q ss_pred             HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcc
Q 011003          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGS  483 (496)
Q Consensus       404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~K  483 (496)
                      ..|..+...|++++|+..|++|+++               ++....++.++|.++..+|++.+|+..++++++++|.+..
T Consensus       343 ~lg~~~~~~g~~~~A~~~~~~Al~l---------------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~  407 (553)
T PRK12370        343 LLGLINTIHSEYIVGSLLFKQANLL---------------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA  407 (553)
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh
Confidence            4566677788888888888888887               3344677888999999999999999999999999998876


Q ss_pred             hhcccc
Q 011003          484 GIHSDG  489 (496)
Q Consensus       484 a~~rrg  489 (496)
                      +++.++
T Consensus       408 ~~~~~~  413 (553)
T PRK12370        408 AGITKL  413 (553)
T ss_pred             hHHHHH
Confidence            655444

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.34  E-value=0.00021  Score=80.62  Aligned_cols=76  Identities=7%  Similarity=-0.028  Sum_probs=47.7

Q ss_pred             HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcc
Q 011003          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGS  483 (496)
Q Consensus       404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~K  483 (496)
                      ..|..+.+.|++.+|+..|.+++.+               ++....+++|++.++..++++.+|+..+++||+++|+++.
T Consensus       614 ~LA~~l~~lG~~deA~~~l~~AL~l---------------~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~  678 (987)
T PRK09782        614 ARATIYRQRHNVPAAVSDLRAALEL---------------EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA  678 (987)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            3455555556666666666666655               2333556667777777777777777777777777777777


Q ss_pred             hhccccccccc
Q 011003          484 GIHSDGRFRFG  494 (496)
Q Consensus       484 a~~rrg~a~~~  494 (496)
                      +++.+|.++..
T Consensus       679 a~~nLA~al~~  689 (987)
T PRK09782        679 LIRQLAYVNQR  689 (987)
T ss_pred             HHHHHHHHHHH
Confidence            77666666554

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.29  E-value=0.00039  Score=64.41  Aligned_cols=78  Identities=23%  Similarity=0.316  Sum_probs=55.4

Q ss_pred             HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcc
Q 011003          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGS  483 (496)
Q Consensus       404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~K  483 (496)
                      ..|..++..|+|.+|+..|.++++...             .......+.|++.|+.+++++.+|+..++++++.+|++..
T Consensus       104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  170 (234)
T TIGR02521       104 NYGTFLCQQGKYEQAMQQFEQAIEDPL-------------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPE  170 (234)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhccc-------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChH
Confidence            345555666666666666666665311             1122456778899999999999999999999999988888


Q ss_pred             hhccccccccc
Q 011003          484 GIHSDGRFRFG  494 (496)
Q Consensus       484 a~~rrg~a~~~  494 (496)
                      +++.+|.++..
T Consensus       171 ~~~~la~~~~~  181 (234)
T TIGR02521       171 SLLELAELYYL  181 (234)
T ss_pred             HHHHHHHHHHH
Confidence            88888776654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.28  E-value=0.00024  Score=77.18  Aligned_cols=81  Identities=7%  Similarity=-0.140  Sum_probs=60.9

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +......++.+++.+++++|+..+.+++..               .+.....++++|.|+.++|+|++|+..++++|..+
T Consensus       120 ~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---------------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~  184 (694)
T PRK15179        120 SEAFILMLRGVKRQQGIEAGRAEIELYFSG---------------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQH  184 (694)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhhc---------------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC
Confidence            334445666666666666666666666665               44447788888999999999999999999998888


Q ss_pred             CCCcchhccccccccc
Q 011003          479 VQKGSGIHSDGRFRFG  494 (496)
Q Consensus       479 p~~~Ka~~rrg~a~~~  494 (496)
                      |++.++|..+|.+|..
T Consensus       185 p~~~~~~~~~a~~l~~  200 (694)
T PRK15179        185 PEFENGYVGWAQSLTR  200 (694)
T ss_pred             CCcHHHHHHHHHHHHH
Confidence            8888888888888763

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.26  E-value=0.00022  Score=61.84  Aligned_cols=78  Identities=12%  Similarity=-0.015  Sum_probs=59.7

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK  481 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~  481 (496)
                      +..-|-.+=..|+|.+|+..|.+|+.+-.               .....+.|++.|++++|+...|++.+..||..--.+
T Consensus        72 ~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~---------------ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~  136 (157)
T PRK15363         72 WFRLGECCQAQKHWGEAIYAYGRAAQIKI---------------DAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEV  136 (157)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhcCC---------------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence            34455555578999999999999999843               348889999999999999999999999999875222


Q ss_pred             --cchhccccccccc
Q 011003          482 --GSGIHSDGRFRFG  494 (496)
Q Consensus       482 --~Ka~~rrg~a~~~  494 (496)
                        -..+-.||++++.
T Consensus       137 ~~~~~l~~~A~~~L~  151 (157)
T PRK15363        137 SEHQILRQRAEKMLQ  151 (157)
T ss_pred             hhHHHHHHHHHHHHH
Confidence              2344555655543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.26  E-value=0.00039  Score=43.85  Aligned_cols=33  Identities=21%  Similarity=0.177  Sum_probs=30.4

Q ss_pred             HhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003          449 ACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK  481 (496)
Q Consensus       449 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~  481 (496)
                      .+|.++|.+|.+++++.+|++.+.++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            568899999999999999999999999999965

...

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.25  E-value=0.001  Score=54.13  Aligned_cols=94  Identities=13%  Similarity=0.098  Sum_probs=70.1

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc--
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES--  477 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~--  477 (496)
                      --...+|...+..|-|.+|...|.+|+..-.   ....++.-...-...-||.-+|.++.++++|.+|+..++++|..  
T Consensus        10 Y~aLs~ae~ql~~g~~~eAa~s~r~AM~~sr---tiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN   86 (144)
T PF12968_consen   10 YMALSDAERQLQDGAYEEAAASCRKAMEVSR---TIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN   86 (144)
T ss_dssp             HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHT---TS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc---cCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence            3445678888999999999999999998732   23333333445667889999999999999999999999999964  


Q ss_pred             -----cC----CCcchhccccccccccC
Q 011003          478 -----SV----QKGSGIHSDGRFRFGRV  496 (496)
Q Consensus       478 -----dp----~~~Ka~~rrg~a~~~l~  496 (496)
                           +.    -|+.|.|+||.|+-+++
T Consensus        87 RRGEL~qdeGklWIaaVfsra~Al~~~G  114 (144)
T PF12968_consen   87 RRGELHQDEGKLWIAAVFSRAVALEGLG  114 (144)
T ss_dssp             HH--TTSTHHHHHHHHHHHHHHHHHHTT
T ss_pred             hccccccccchhHHHHHHHHHHHHHhcC
Confidence                 33    36788899998887653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.20  E-value=0.00034  Score=63.85  Aligned_cols=81  Identities=20%  Similarity=0.195  Sum_probs=62.9

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+..-|..++.+|+|++|...|.+|+.--.             .......+-|++.|.+|+|++..|.+++.++|++|
T Consensus       103 GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~-------------Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d  169 (250)
T COG3063         103 GDVLNNYGAFLCAQGRPEEAMQQFERALADPA-------------YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD  169 (250)
T ss_pred             cchhhhhhHHHHhCCChHHHHHHHHHHHhCCC-------------CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence            34455667778888888888888888887411             12236678899999999999999999999999999


Q ss_pred             CCCcchhccccccc
Q 011003          479 VQKGSGIHSDGRFR  492 (496)
Q Consensus       479 p~~~Ka~~rrg~a~  492 (496)
                      |++.-++.-+++-+
T Consensus       170 p~~~~~~l~~a~~~  183 (250)
T COG3063         170 PQFPPALLELARLH  183 (250)
T ss_pred             cCCChHHHHHHHHH
Confidence            99987666555444

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.17  E-value=0.00092  Score=55.30  Aligned_cols=71  Identities=18%  Similarity=0.156  Sum_probs=59.8

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK  481 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~  481 (496)
                      ....|..+++.++|..|+..|.+++...+..            .....++.+++.|+.+++++.+|+..++++++..|++
T Consensus        42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  109 (119)
T TIGR02795        42 HYWLGEAYYAQGKYADAAKAFLAVVKKYPKS------------PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGS  109 (119)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHCCCC------------CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence            4457888999999999999999999874331            1225668999999999999999999999999999998


Q ss_pred             cch
Q 011003          482 GSG  484 (496)
Q Consensus       482 ~Ka  484 (496)
                      ..+
T Consensus       110 ~~~  112 (119)
T TIGR02795       110 SAA  112 (119)
T ss_pred             hhH
Confidence            654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.13  E-value=0.00043  Score=69.02  Aligned_cols=74  Identities=9%  Similarity=-0.009  Sum_probs=68.8

Q ss_pred             hhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcch
Q 011003          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSG  484 (496)
Q Consensus       405 ~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka  484 (496)
                      .||-+--+++.++|+..|++|+++               ++....+|.=++.=|+.|++-..|++.++.|++++|.+-+|
T Consensus       336 IaNYYSlr~eHEKAv~YFkRALkL---------------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA  400 (559)
T KOG1155|consen  336 IANYYSLRSEHEKAVMYFKRALKL---------------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA  400 (559)
T ss_pred             ehhHHHHHHhHHHHHHHHHHHHhc---------------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH
Confidence            577777889999999999999998               77789999999999999999999999999999999999999


Q ss_pred             hcccccccc
Q 011003          485 IHSDGRFRF  493 (496)
Q Consensus       485 ~~rrg~a~~  493 (496)
                      ||-.||||-
T Consensus       401 WYGLGQaYe  409 (559)
T KOG1155|consen  401 WYGLGQAYE  409 (559)
T ss_pred             HhhhhHHHH
Confidence            999999984

>PRK12370 invasion protein regulator; Provisional

Probab=97.12  E-value=0.00031  Score=75.32  Aligned_cols=70  Identities=13%  Similarity=-0.096  Sum_probs=61.8

Q ss_pred             hcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccc
Q 011003          411 KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGR  490 (496)
Q Consensus       411 k~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~  490 (496)
                      ..+++.+|+..+.+|+++               ++....++.++|.++..+++|.+|+..+++||+++|+++.+|+.+|.
T Consensus       316 ~~~~~~~A~~~~~~Al~l---------------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~  380 (553)
T PRK12370        316 KQNAMIKAKEHAIKATEL---------------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGW  380 (553)
T ss_pred             cchHHHHHHHHHHHHHhc---------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            456689999999999998               34447788999999999999999999999999999999999999998


Q ss_pred             ccccc
Q 011003          491 FRFGR  495 (496)
Q Consensus       491 a~~~l  495 (496)
                      +|..+
T Consensus       381 ~l~~~  385 (553)
T PRK12370        381 NLFMA  385 (553)
T ss_pred             HHHHC
Confidence            87653

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.12  E-value=0.0005  Score=63.92  Aligned_cols=78  Identities=15%  Similarity=0.104  Sum_probs=68.3

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      -++..|..++..|+|..|+..+.+|..+               .+....+|+-++.||.++|++..|...+.+++++.|+
T Consensus       102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l---------------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~  166 (257)
T COG5010         102 LLAAQGKNQIRNGNFGEAVSVLRKAARL---------------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN  166 (257)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHhcc---------------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC
Confidence            3445999999999999999999999998               3444788999999999999999999999999999999


Q ss_pred             Ccchhcccccccc
Q 011003          481 KGSGIHSDGRFRF  493 (496)
Q Consensus       481 ~~Ka~~rrg~a~~  493 (496)
                      ++.++-+.|..|+
T Consensus       167 ~p~~~nNlgms~~  179 (257)
T COG5010         167 EPSIANNLGMSLL  179 (257)
T ss_pred             CchhhhhHHHHHH
Confidence            9988877765443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.10  E-value=0.00022  Score=52.58  Aligned_cols=44  Identities=14%  Similarity=0.106  Sum_probs=40.7

Q ss_pred             hHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003          452 LNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       452 ~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      +++|..+++.|+|.+|+..++++++.+|++..+|+.+|.++..+
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~   44 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQ   44 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence            36899999999999999999999999999999999999988754

>PLN02789 farnesyltranstransferase

Probab=97.09  E-value=0.00059  Score=67.43  Aligned_cols=50  Identities=12%  Similarity=0.038  Sum_probs=45.8

Q ss_pred             HHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccc
Q 011003          444 KALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRF  493 (496)
Q Consensus       444 ~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~  493 (496)
                      ++....++++|+.++.++++|.+|+++|+++|++||+|..||+.|+.++.
T Consensus       138 dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~  187 (320)
T PLN02789        138 DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVIT  187 (320)
T ss_pred             CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHH
Confidence            55668899999999999999999999999999999999999999987653

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.07  E-value=0.0016  Score=59.58  Aligned_cols=84  Identities=24%  Similarity=0.253  Sum_probs=73.0

Q ss_pred             HHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHH
Q 011003          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKK  474 (496)
Q Consensus       395 ~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  474 (496)
                      .-+.+....+.|-.++.+|++..|..-..+||+.               ++.....|+-||..|.++|+.+.|-+.+.+|
T Consensus        31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~---------------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkA   95 (250)
T COG3063          31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH---------------DPSYYLAHLVRAHYYQKLGENDLADESYRKA   95 (250)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------CcccHHHHHHHHHHHHHcCChhhHHHHHHHH
Confidence            3455667778999999999999999999999998               5666888999999999999999999999999


Q ss_pred             hcccCCCcchhcccccccc
Q 011003          475 CESSVQKGSGIHSDGRFRF  493 (496)
Q Consensus       475 l~~dp~~~Ka~~rrg~a~~  493 (496)
                      |.++|+|...+.+-|.-|.
T Consensus        96 lsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          96 LSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HhcCCCccchhhhhhHHHH
Confidence            9999999887776665443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.07  E-value=0.0012  Score=51.45  Aligned_cols=58  Identities=28%  Similarity=0.326  Sum_probs=46.0

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHH
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKK  474 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  474 (496)
                      -+...|..+|+.|+|.+|+..+++ ++.               .+....++.-+|.|++++++|++|+....+|
T Consensus        27 ~~~~la~~~~~~~~y~~A~~~~~~-~~~---------------~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   27 YLYNLAQCYFQQGKYEEAIELLQK-LKL---------------DPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHC-HTH---------------HHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHH-hCC---------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            344479999999999999999998 554               3333556666799999999999999998875

>PLN02789 farnesyltranstransferase

Probab=97.06  E-value=0.00057  Score=67.55  Aligned_cols=66  Identities=11%  Similarity=0.035  Sum_probs=35.9

Q ss_pred             hHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhcc-CHHHHHHHHHHHhcccCCCcchhcc
Q 011003          409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKKCESSVQKGSGIHS  487 (496)
Q Consensus       409 ~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~-~~~~Ai~~~~~al~~dp~~~Ka~~r  487 (496)
                      +.+.+++.+|+..+.++|++-               +....++++|+.|+.+++ ++.+|+..|+++++.+|+|..+|+.
T Consensus        47 l~~~e~serAL~lt~~aI~ln---------------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~  111 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLN---------------PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH  111 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHC---------------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence            345678999999999999873               233344444444444443 2344444444444444444444443


Q ss_pred             cc
Q 011003          488 DG  489 (496)
Q Consensus       488 rg  489 (496)
                      |+
T Consensus       112 R~  113 (320)
T PLN02789        112 RR  113 (320)
T ss_pred             HH
Confidence            33

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.06  E-value=0.00054  Score=74.50  Aligned_cols=82  Identities=4%  Similarity=-0.167  Sum_probs=73.3

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+.--|......|+|++|...|..++.+.+               ....++.|+|.+..+++++++|+..|+++|..+
T Consensus        86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P---------------d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~  150 (694)
T PRK15179         86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFP---------------DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG  150 (694)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC---------------CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence            45556677778899999999999999999944               448999999999999999999999999999999


Q ss_pred             CCCcchhcccccccccc
Q 011003          479 VQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       479 p~~~Ka~~rrg~a~~~l  495 (496)
                      |+|..+++.+|.++..+
T Consensus       151 p~~~~~~~~~a~~l~~~  167 (694)
T PRK15179        151 SSSAREILLEAKSWDEI  167 (694)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999988765

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.05  E-value=0.00062  Score=68.31  Aligned_cols=97  Identities=12%  Similarity=0.063  Sum_probs=72.2

Q ss_pred             HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCC-------------CChH------HHHHHHHHHHHhhhHHHHH
Q 011003          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-------------FGDE------EKKQAKALKVACNLNNAAC  457 (496)
Q Consensus       397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~-------------~~~~------~~~~~~~~~~~~~~N~a~~  457 (496)
                      ..+..+.-+|...|-.|++..|-..+.++|++.+....             .+++      .-..+++....+|..|++.
T Consensus       324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm  403 (606)
T KOG0547|consen  324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQM  403 (606)
T ss_pred             HHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHH
Confidence            44778888999999999999999999999987543211             1111      1234556667778888888


Q ss_pred             HHhccCHHHHHHHHHHHhcccCCCcchhcccccccc
Q 011003          458 KLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRF  493 (496)
Q Consensus       458 ~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~  493 (496)
                      ++-+++|.+|+.++++|++++|+|+-+|-.+|-|++
T Consensus       404 ~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Y  439 (606)
T KOG0547|consen  404 RFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALY  439 (606)
T ss_pred             HHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHH
Confidence            888888888888888888888888888877776554

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.00  E-value=0.00051  Score=69.25  Aligned_cols=53  Identities=11%  Similarity=-0.057  Sum_probs=48.4

Q ss_pred             HHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcch---hcccccccccc
Q 011003          443 AKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSG---IHSDGRFRFGR  495 (496)
Q Consensus       443 ~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka---~~rrg~a~~~l  495 (496)
                      .++.....|+|++.+|.++++|++|+..|++||+++|++..|   ||.+|.||..+
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~L  125 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYR  125 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHc
Confidence            466778999999999999999999999999999999999965   99999988765

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=96.99  E-value=0.00064  Score=62.50  Aligned_cols=67  Identities=6%  Similarity=-0.097  Sum_probs=59.2

Q ss_pred             hcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccc
Q 011003          411 KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGR  490 (496)
Q Consensus       411 k~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~  490 (496)
                      ..++..+++..|.++++.               ++.....|.++|.+|+.++++.+|+..+++|++++|+|..+++..|.
T Consensus        51 ~~~~~~~~i~~l~~~L~~---------------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~  115 (198)
T PRK10370         51 SQQTPEAQLQALQDKIRA---------------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALAT  115 (198)
T ss_pred             CchhHHHHHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            467778888888888887               44458899999999999999999999999999999999999999888


Q ss_pred             cc
Q 011003          491 FR  492 (496)
Q Consensus       491 a~  492 (496)
                      ++
T Consensus       116 aL  117 (198)
T PRK10370        116 VL  117 (198)
T ss_pred             HH
Confidence            75

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.96  E-value=0.0044  Score=53.84  Aligned_cols=96  Identities=16%  Similarity=0.099  Sum_probs=73.8

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccC-------CCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHH
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-------TSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC  471 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~-------~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~  471 (496)
                      ...+...|...-..++...++..|.+|+.++...       ..+.......+......++..++..++..++|.+|+..|
T Consensus         6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~   85 (146)
T PF03704_consen    6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL   85 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            3445556777778889999999999999987432       123345667888899999999999999999999999999


Q ss_pred             HHHhcccCCCcchhccccccccc
Q 011003          472 TKKCESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       472 ~~al~~dp~~~Ka~~rrg~a~~~  494 (496)
                      .+++.+||-+..+|...-++|..
T Consensus        86 ~~~l~~dP~~E~~~~~lm~~~~~  108 (146)
T PF03704_consen   86 QRALALDPYDEEAYRLLMRALAA  108 (146)
T ss_dssp             HHHHHHSTT-HHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHH
Confidence            99999999998888776666544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.89  E-value=0.0021  Score=61.73  Aligned_cols=80  Identities=9%  Similarity=0.000  Sum_probs=59.5

Q ss_pred             HHhhhhh-HhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003          403 KEQGNTL-FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK  481 (496)
Q Consensus       403 k~~Gn~~-fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~  481 (496)
                      -..+-.+ ++.++|.+|+..|++.++..+.+            .....++.-+|.+|+..++|.+|+..+.++++..|++
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s------------~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s  213 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDS------------TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS  213 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence            3344444 56789999999999999886543            1224566788888999999999999999998888775


Q ss_pred             ---cchhccccccccc
Q 011003          482 ---GSGIHSDGRFRFG  494 (496)
Q Consensus       482 ---~Ka~~rrg~a~~~  494 (496)
                         ..|||+.|.++..
T Consensus       214 ~~~~dAl~klg~~~~~  229 (263)
T PRK10803        214 PKAADAMFKVGVIMQD  229 (263)
T ss_pred             cchhHHHHHHHHHHHH
Confidence               5577777776643

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=96.87  E-value=0.00099  Score=69.96  Aligned_cols=78  Identities=10%  Similarity=0.147  Sum_probs=68.2

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK  481 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~  481 (496)
                      .+..|+-.+.+++|.+|.++++.++++               +++....|.+++.|++++++|+.|.+++..++.++|+|
T Consensus       488 ~r~~~~~~~~~~~fs~~~~hle~sl~~---------------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~  552 (777)
T KOG1128|consen  488 QRSLALLILSNKDFSEADKHLERSLEI---------------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN  552 (777)
T ss_pred             HHhhccccccchhHHHHHHHHHHHhhc---------------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc
Confidence            344555567778899999999988888               78889999999999999999999999999999999999


Q ss_pred             cchhccccccccc
Q 011003          482 GSGIHSDGRFRFG  494 (496)
Q Consensus       482 ~Ka~~rrg~a~~~  494 (496)
                      ..||...+.||+-
T Consensus       553 ~eaWnNls~ayi~  565 (777)
T KOG1128|consen  553 AEAWNNLSTAYIR  565 (777)
T ss_pred             hhhhhhhhHHHHH
Confidence            9999988877753

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=96.86  E-value=0.0024  Score=66.43  Aligned_cols=77  Identities=22%  Similarity=0.153  Sum_probs=64.9

Q ss_pred             HHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHH
Q 011003          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKK  474 (496)
Q Consensus       395 ~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  474 (496)
                      .+..+..++.-|+.+...++|.+|+..|++|+...+......       ++.....+.|+|..|.+.|+|.+|..+|++|
T Consensus       237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~-------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A  309 (508)
T KOG1840|consen  237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED-------HPAVAATLNNLAVLYYKQGKFAEAEEYCERA  309 (508)
T ss_pred             CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence            345566667789999999999999999999999876432222       6677899999999999999999999999999


Q ss_pred             hccc
Q 011003          475 CESS  478 (496)
Q Consensus       475 l~~d  478 (496)
                      +++-
T Consensus       310 l~I~  313 (508)
T KOG1840|consen  310 LEIY  313 (508)
T ss_pred             HHHH
Confidence            9874

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=96.85  E-value=0.0015  Score=73.89  Aligned_cols=75  Identities=15%  Similarity=0.082  Sum_probs=64.9

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .+...|..+...|++++|+..|.+|++..+               ....++.|+|.++.++|++.+|+..+++|++++|+
T Consensus       645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P---------------~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~  709 (987)
T PRK09782        645 YQAALGYALWDSGDIAQSREMLERAHKGLP---------------DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN  709 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            345677888999999999999999999844               34788999999999999999999999999999999


Q ss_pred             Ccchhccccc
Q 011003          481 KGSGIHSDGR  490 (496)
Q Consensus       481 ~~Ka~~rrg~  490 (496)
                      +++..+-.|.
T Consensus       710 ~a~i~~~~g~  719 (987)
T PRK09782        710 QALITPLTPE  719 (987)
T ss_pred             CchhhhhhhH
Confidence            9877655543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=96.82  E-value=0.0013  Score=66.36  Aligned_cols=76  Identities=20%  Similarity=0.105  Sum_probs=66.1

Q ss_pred             hhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcch
Q 011003          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSG  484 (496)
Q Consensus       405 ~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka  484 (496)
                      .+.-+++.+++.+|++.+++++.+.               +....+..|+|.+++++|++.+|+...+..+.-+|+++-.
T Consensus       346 ~~~i~~~~nk~~~A~e~~~kal~l~---------------P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~  410 (484)
T COG4783         346 AGDILLEANKAKEAIERLKKALALD---------------PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNG  410 (484)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHhcC---------------CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchH
Confidence            3445667889999999999999884               4447889999999999999999999999999999999999


Q ss_pred             hcccccccccc
Q 011003          485 IHSDGRFRFGR  495 (496)
Q Consensus       485 ~~rrg~a~~~l  495 (496)
                      |...|+||-.+
T Consensus       411 w~~LAqay~~~  421 (484)
T COG4783         411 WDLLAQAYAEL  421 (484)
T ss_pred             HHHHHHHHHHh
Confidence            99999987543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=96.77  E-value=0.0016  Score=71.24  Aligned_cols=78  Identities=8%  Similarity=-0.037  Sum_probs=53.4

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .+-..|..+++.|++++|+..|+++++.-+               ....++.|++.++.++|+|.+|+..++++++.+|+
T Consensus       286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P---------------~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~  350 (656)
T PRK15174        286 IVTLYADALIRTGQNEKAIPLLQQSLATHP---------------DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV  350 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            334567777788888888888888887632               22455667777777777777777777777777777


Q ss_pred             Ccchhcccccccc
Q 011003          481 KGSGIHSDGRFRF  493 (496)
Q Consensus       481 ~~Ka~~rrg~a~~  493 (496)
                      +..+++++|.++.
T Consensus       351 ~~~~~~~~a~al~  363 (656)
T PRK15174        351 TSKWNRYAAAALL  363 (656)
T ss_pred             chHHHHHHHHHHH
Confidence            7665555555543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=96.76  E-value=0.0022  Score=68.85  Aligned_cols=84  Identities=14%  Similarity=0.104  Sum_probs=70.8

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      ...=+.+-+..+...|+|..|++.|..++..-..              ...-+|.++|.||+.++++++|++.+.+||.+
T Consensus       413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~--------------~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~  478 (895)
T KOG2076|consen  413 DVDLYLDLADALTNIGKYKEALRLLSPITNREGY--------------QNAFVWYKLARCYMELGEYEEAIEFYEKVLIL  478 (895)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc--------------cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            3445677788888999999999999998875221              11678999999999999999999999999999


Q ss_pred             cCCCcchhcccccccccc
Q 011003          478 SVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       478 dp~~~Ka~~rrg~a~~~l  495 (496)
                      +|+|..|..+.+..+.++
T Consensus       479 ~p~~~D~Ri~Lasl~~~~  496 (895)
T KOG2076|consen  479 APDNLDARITLASLYQQL  496 (895)
T ss_pred             CCCchhhhhhHHHHHHhc
Confidence            999999999888776654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.76  E-value=0.0014  Score=76.62  Aligned_cols=75  Identities=19%  Similarity=0.233  Sum_probs=65.4

Q ss_pred             HHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCc
Q 011003          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKG  482 (496)
Q Consensus       403 k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~  482 (496)
                      ...|..+++.|++.+|+..|+++++.-+.               ...++.++|.++++++++.+|+..++++|+++|++.
T Consensus       355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~---------------~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~  419 (1157)
T PRK11447        355 IQQGDAALKANNLAQAERLYQQARQVDNT---------------DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT  419 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            45688899999999999999999998432               256788999999999999999999999999999999


Q ss_pred             chhccccccc
Q 011003          483 SGIHSDGRFR  492 (496)
Q Consensus       483 Ka~~rrg~a~  492 (496)
                      .++...+.++
T Consensus       420 ~a~~~L~~l~  429 (1157)
T PRK11447        420 NAVRGLANLY  429 (1157)
T ss_pred             HHHHHHHHHH
Confidence            8887666554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.74  E-value=0.0038  Score=55.98  Aligned_cols=69  Identities=13%  Similarity=0.051  Sum_probs=57.7

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccC--------------H
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD--------------Y  464 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~--------------~  464 (496)
                      +..+...|..+++.|+|.+|+..|.+|++..+               .....+.+++.++..+++              |
T Consensus        72 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~  136 (172)
T PRK02603         72 SYILYNMGIIYASNGEHDKALEYYHQALELNP---------------KQPSALNNIAVIYHKRGEKAEEAGDQDEAEALF  136 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---------------ccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHH
Confidence            34567788999999999999999999999833               336677889999988887              6


Q ss_pred             HHHHHHHHHHhcccCCCc
Q 011003          465 KQAEKLCTKKCESSVQKG  482 (496)
Q Consensus       465 ~~Ai~~~~~al~~dp~~~  482 (496)
                      .+|++.+++++.++|+|.
T Consensus       137 ~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        137 DKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHHHHHHHHHHhhCchhH
Confidence            889999999999999874

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=96.71  E-value=0.0016  Score=71.19  Aligned_cols=50  Identities=10%  Similarity=-0.152  Sum_probs=42.2

Q ss_pred             HHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003          446 LKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       446 ~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      ....++.|+|.+++++++|.+|+..++++++++|++..+++..|.+|..+
T Consensus       282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~  331 (656)
T PRK15174        282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQV  331 (656)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            34678889999999999999999999999999999998888888776543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=96.71  E-value=0.0039  Score=58.77  Aligned_cols=83  Identities=11%  Similarity=-0.026  Sum_probs=60.9

Q ss_pred             ccHHHHHHHHHHHhhhhccCCCCChH--HHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC---cchhcc
Q 011003          413 GKYARASKRYEKAVKYIEYDTSFGDE--EKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK---GSGIHS  487 (496)
Q Consensus       413 ~~y~~A~~~Y~~al~~~~~~~~~~~~--~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~---~Ka~~r  487 (496)
                      +++..|++.|.++++..+........  ..............++|.+|++.|+|.+|+..+.++++..|++   .+|+++
T Consensus       129 ~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~  208 (235)
T TIGR03302       129 TAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALAR  208 (235)
T ss_pred             HHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHH
Confidence            88999999999999875443111110  1112222333445689999999999999999999999997764   589999


Q ss_pred             cccccccc
Q 011003          488 DGRFRFGR  495 (496)
Q Consensus       488 rg~a~~~l  495 (496)
                      +|.++..+
T Consensus       209 l~~~~~~l  216 (235)
T TIGR03302       209 LVEAYLKL  216 (235)
T ss_pred             HHHHHHHc
Confidence            99998765

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.67  E-value=0.005  Score=47.31  Aligned_cols=65  Identities=25%  Similarity=0.272  Sum_probs=55.6

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .+...|..++..+++..|+..|.++++..+..               ..++.+++.++..++++.+|+..+.++++.+|+
T Consensus        36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDN---------------AKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---------------hhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            35567888888999999999999999874432               367889999999999999999999999998874

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.66  E-value=0.0023  Score=65.40  Aligned_cols=67  Identities=16%  Similarity=0.083  Sum_probs=60.3

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      -+-.-|..+-|.+.|.+|+..|++||.+.+.               ....|.-+|.||..+|+++.|++++.+||-++|+
T Consensus       457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k---------------~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~  521 (611)
T KOG1173|consen  457 TLNNLGHAYRKLNKYEEAIDYYQKALLLSPK---------------DASTHASIGYIYHLLGNLDKAIDHFHKALALKPD  521 (611)
T ss_pred             HHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC---------------chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence            3456788888999999999999999999444               4888999999999999999999999999999999


Q ss_pred             Cc
Q 011003          481 KG  482 (496)
Q Consensus       481 ~~  482 (496)
                      |.
T Consensus       522 n~  523 (611)
T KOG1173|consen  522 NI  523 (611)
T ss_pred             cH
Confidence            94

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.65  E-value=0.0021  Score=75.17  Aligned_cols=77  Identities=16%  Similarity=0.117  Sum_probs=67.3

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .+...|+.+...|++.+|+..|++|++..+.               ...++.++|.+|.+++++.+|+..++++++++|+
T Consensus       463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~---------------~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~  527 (1157)
T PRK11447        463 RLAQQAEALENQGKWAQAAELQRQRLALDPG---------------SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN  527 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            4556888999999999999999999998443               3667899999999999999999999999999999


Q ss_pred             Ccchhccccccc
Q 011003          481 KGSGIHSDGRFR  492 (496)
Q Consensus       481 ~~Ka~~rrg~a~  492 (496)
                      ++.++|.+|..+
T Consensus       528 ~~~~~~a~al~l  539 (1157)
T PRK11447        528 DPEQVYAYGLYL  539 (1157)
T ss_pred             CHHHHHHHHHHH
Confidence            999888776543

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.59  E-value=0.0059  Score=63.27  Aligned_cols=75  Identities=21%  Similarity=0.184  Sum_probs=65.2

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      =.-+...+..+|+.++|..|++.|...++++..+.         .+...+++..|++.||+++.+.++|++...+|=+.|
T Consensus       354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~---------~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d  424 (872)
T KOG4814|consen  354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDN---------YSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD  424 (872)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchh---------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence            34567889999999999999999999999987651         133448899999999999999999999999999999


Q ss_pred             CCCc
Q 011003          479 VQKG  482 (496)
Q Consensus       479 p~~~  482 (496)
                      |.++
T Consensus       425 ~~~~  428 (872)
T KOG4814|consen  425 RQSP  428 (872)
T ss_pred             cccH
Confidence            9875

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=96.58  E-value=0.0013  Score=64.01  Aligned_cols=94  Identities=18%  Similarity=0.082  Sum_probs=67.2

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCC-----------CCh-HH-HHHHH------HHHHHhhhHHHHHHHhc
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-----------FGD-EE-KKQAK------ALKVACNLNNAACKLKL  461 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~-----------~~~-~~-~~~~~------~~~~~~~~N~a~~~~kl  461 (496)
                      -+...|+.+.+.|++.+|++.|++|++.-+.+..           ..+ ++ ...+.      +....++..+|.+|+.+
T Consensus       148 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l  227 (280)
T PF13429_consen  148 FWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL  227 (280)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence            3456777888999999999999999998654321           111 11 11111      22245678999999999


Q ss_pred             cCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003          462 KDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       462 ~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~  494 (496)
                      |++++|+..++++++.+|+|+..+...|.++..
T Consensus       228 g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~  260 (280)
T PF13429_consen  228 GRYEEALEYLEKALKLNPDDPLWLLAYADALEQ  260 (280)
T ss_dssp             T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-
T ss_pred             ccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999888877776654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.57  E-value=0.0019  Score=67.24  Aligned_cols=81  Identities=16%  Similarity=0.073  Sum_probs=59.5

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp  479 (496)
                      ..+-.-|..+.|+++|+.|.-.|++|+++               ++....+.+-.+..+.++|+.++|+..+++|+-+||
T Consensus       490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~I---------------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~  554 (638)
T KOG1126|consen  490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEI---------------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP  554 (638)
T ss_pred             HHHHhhhhheeccchhhHHHHHHHhhhcC---------------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC
Confidence            34444555555666666666666666665               666677777788888888888888888888888888


Q ss_pred             CCcchhcccccccccc
Q 011003          480 QKGSGIHSDGRFRFGR  495 (496)
Q Consensus       480 ~~~Ka~~rrg~a~~~l  495 (496)
                      .|+-..|.||+.|+++
T Consensus       555 kn~l~~~~~~~il~~~  570 (638)
T KOG1126|consen  555 KNPLCKYHRASILFSL  570 (638)
T ss_pred             CCchhHHHHHHHHHhh
Confidence            8888888888877664

>smart00028 TPR Tetratricopeptide repeats

Probab=96.56  E-value=0.0036  Score=37.76  Aligned_cols=33  Identities=27%  Similarity=0.253  Sum_probs=30.1

Q ss_pred             HhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003          449 ACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK  481 (496)
Q Consensus       449 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~  481 (496)
                      .++.++|.|++.++++.+|+..+.++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            467899999999999999999999999998864

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.55  E-value=0.0018  Score=41.49  Aligned_cols=29  Identities=14%  Similarity=0.033  Sum_probs=24.9

Q ss_pred             hhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          450 CNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       450 ~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +|+|+|.+|.++|+|++|+..+.++|.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            47899999999999999999999976554

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=96.51  E-value=0.003  Score=71.10  Aligned_cols=81  Identities=19%  Similarity=0.108  Sum_probs=69.1

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+...|+.++++|+|.+|+..|.++++..+.               ...++..+|.+++++|+|.+|+..++++++..
T Consensus        22 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~   86 (899)
T TIGR02917        22 PESLIEAAKSYLQKNKYKAAIIQLKNALQKDPN---------------DAEARFLLGKIYLALGDYAAAEKELRKALSLG   86 (899)
T ss_pred             HHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            345778899999999999999999999997433               36788899999999999999999999999999


Q ss_pred             CCCcchhccccccccc
Q 011003          479 VQKGSGIHSDGRFRFG  494 (496)
Q Consensus       479 p~~~Ka~~rrg~a~~~  494 (496)
                      |.+..+++..|+++..
T Consensus        87 ~~~~~~~~~~a~~~~~  102 (899)
T TIGR02917        87 YPKNQVLPLLARAYLL  102 (899)
T ss_pred             CChhhhHHHHHHHHHH
Confidence            9888777777666543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.51  E-value=0.0005  Score=70.33  Aligned_cols=64  Identities=20%  Similarity=0.203  Sum_probs=56.9

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      +-.-|-.+-...++.+|+..|++|+.+               .+-.+.+.+|+|.||+.+|.|++|++++-.||.+.+.
T Consensus       467 WNRLGAtLAN~~~s~EAIsAY~rALqL---------------qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  467 WNRLGATLANGNRSEEAISAYNRALQL---------------QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             HHHhhHHhcCCcccHHHHHHHHHHHhc---------------CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            345677777788999999999999999               6666999999999999999999999999999999775

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=96.50  E-value=0.0065  Score=61.87  Aligned_cols=46  Identities=17%  Similarity=0.011  Sum_probs=33.5

Q ss_pred             HhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003          449 ACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       449 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~  494 (496)
                      .++.+++.++++.+++.+|+..++++++.+|++..+++..|.++..
T Consensus       181 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  226 (389)
T PRK11788        181 HFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALA  226 (389)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH
Confidence            3566777777777777778777777777777777777776666543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=96.46  E-value=0.0034  Score=70.69  Aligned_cols=96  Identities=18%  Similarity=0.067  Sum_probs=57.4

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCC-----------CCh--HHH------HHHHHHHHHhhhHHHHHH
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-----------FGD--EEK------KQAKALKVACNLNNAACK  458 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~-----------~~~--~~~------~~~~~~~~~~~~N~a~~~  458 (496)
                      .+..+...|..+++.|+|.+|+..|.++++..+....           ..+  +-.      .+..+....++..++.++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  203 (899)
T TIGR02917       124 AAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLL  203 (899)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            3455667889999999999999999999886432210           000  000      011112234455566666


Q ss_pred             HhccCHHHHHHHHHHHhcccCCCcchhcccccccc
Q 011003          459 LKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRF  493 (496)
Q Consensus       459 ~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~  493 (496)
                      .+++++.+|+..++++++++|++..+++.++.+++
T Consensus       204 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~  238 (899)
T TIGR02917       204 LSLGNIELALAAYRKAIALRPNNPAVLLALATILI  238 (899)
T ss_pred             HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            66666666666666666666666666666655543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.43  E-value=0.0049  Score=55.85  Aligned_cols=80  Identities=13%  Similarity=-0.022  Sum_probs=68.3

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      |.-+-++|+-+=.-|-+..|...|++++.+               ++....+++-++.-+...++|+.|.+.++.++++|
T Consensus        65 A~l~fERGvlYDSlGL~~LAR~DftQaLai---------------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD  129 (297)
T COG4785          65 AQLLFERGVLYDSLGLRALARNDFSQALAI---------------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD  129 (297)
T ss_pred             HHHHHHhcchhhhhhHHHHHhhhhhhhhhc---------------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC
Confidence            444556676666677778888888888888               66678999999999999999999999999999999


Q ss_pred             CCCcchhcccccccc
Q 011003          479 VQKGSGIHSDGRFRF  493 (496)
Q Consensus       479 p~~~Ka~~rrg~a~~  493 (496)
                      |.+--|+.+||.+++
T Consensus       130 p~y~Ya~lNRgi~~Y  144 (297)
T COG4785         130 PTYNYAHLNRGIALY  144 (297)
T ss_pred             CcchHHHhccceeee
Confidence            999999999998764

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.42  E-value=0.003  Score=64.68  Aligned_cols=85  Identities=22%  Similarity=0.158  Sum_probs=67.1

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .+++.|...|..+.|.+|...|++++.-.+....       + .......++|++.++.|++.|.+||..+++||.+.|.
T Consensus       416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~-------e-~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k  487 (611)
T KOG1173|consen  416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN-------E-KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK  487 (611)
T ss_pred             hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc-------c-ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence            4578888999999999999999999954332110       0 1135778999999999999999999999999999999


Q ss_pred             Ccchhcccccccc
Q 011003          481 KGSGIHSDGRFRF  493 (496)
Q Consensus       481 ~~Ka~~rrg~a~~  493 (496)
                      ++.+|---|-+|.
T Consensus       488 ~~~~~asig~iy~  500 (611)
T KOG1173|consen  488 DASTHASIGYIYH  500 (611)
T ss_pred             chhHHHHHHHHHH
Confidence            9887765554443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=96.42  E-value=0.0064  Score=67.86  Aligned_cols=78  Identities=8%  Similarity=-0.139  Sum_probs=65.7

Q ss_pred             HHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCc
Q 011003          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKG  482 (496)
Q Consensus       403 k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~  482 (496)
                      ...|..+...|++.+|+..+.+++...+..               ..++.++|.++.+++++.+|+..++++++++|++.
T Consensus       363 ~~~a~~l~~~g~~~eA~~~l~~al~~~P~n---------------~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~  427 (765)
T PRK10049        363 SLLSQVAKYSNDLPQAEMRARELAYNAPGN---------------QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNI  427 (765)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh
Confidence            456777788999999999999999884433               67889999999999999999999999999999998


Q ss_pred             chhcccccccccc
Q 011003          483 SGIHSDGRFRFGR  495 (496)
Q Consensus       483 Ka~~rrg~a~~~l  495 (496)
                      .+++-+|.+++++
T Consensus       428 ~l~~~~a~~al~~  440 (765)
T PRK10049        428 NLEVEQAWTALDL  440 (765)
T ss_pred             HHHHHHHHHHHHh
Confidence            8888887766543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=96.41  E-value=0.0071  Score=58.34  Aligned_cols=65  Identities=17%  Similarity=0.177  Sum_probs=59.5

Q ss_pred             HHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCc
Q 011003          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKG  482 (496)
Q Consensus       403 k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~  482 (496)
                      -.++-.+|+.++|..|-...+.|+.+               +..+..+|+.|+++...+|+..+|.+||+.||++.|++.
T Consensus       135 ~NRA~AYlk~K~FA~AE~DC~~AiaL---------------d~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~  199 (536)
T KOG4648|consen  135 INRALAYLKQKSFAQAEEDCEAAIAL---------------DKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNI  199 (536)
T ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHh---------------hHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence            35677888999999999999999988               889999999999999999999999999999999999874

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.31  E-value=0.0091  Score=55.85  Aligned_cols=84  Identities=18%  Similarity=0.142  Sum_probs=68.6

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      -+..+-++|....+.|+|.+|+..|++..+-.+.            .+....+.+.++.+++|-++|..|+...++-+++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~------------s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l  100 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPF------------SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL  100 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------------CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            3567888999999999999999999988865443            2233566778999999999999999999999999


Q ss_pred             cCCCcc---hhcccccccc
Q 011003          478 SVQKGS---GIHSDGRFRF  493 (496)
Q Consensus       478 dp~~~K---a~~rrg~a~~  493 (496)
                      .|.+..   ++|-+|.+++
T Consensus       101 yP~~~n~dY~~YlkgLs~~  119 (254)
T COG4105         101 YPTHPNADYAYYLKGLSYF  119 (254)
T ss_pred             CCCCCChhHHHHHHHHHHh
Confidence            998875   6677776543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.31  E-value=0.0016  Score=64.60  Aligned_cols=78  Identities=17%  Similarity=0.114  Sum_probs=64.9

Q ss_pred             HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcc
Q 011003          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGS  483 (496)
Q Consensus       404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~K  483 (496)
                      ..||.+|++.+|.+|++.|.-||.-.+..   +       ..+++++++|++.++.++|.|..||..++.+.+..|+-.-
T Consensus       242 nigni~~kkr~fskaikfyrmaldqvpsi---n-------k~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a  311 (840)
T KOG2003|consen  242 NIGNIHFKKREFSKAIKFYRMALDQVPSI---N-------KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIA  311 (840)
T ss_pred             eecceeeehhhHHHHHHHHHHHHhhcccc---c-------hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHh
Confidence            57999999999999999999999875442   1       5678999999999999999999999999999999996544


Q ss_pred             hhccccccc
Q 011003          484 GIHSDGRFR  492 (496)
Q Consensus       484 a~~rrg~a~  492 (496)
                      | |..-.|+
T Consensus       312 ~-~nl~i~~  319 (840)
T KOG2003|consen  312 A-LNLIICA  319 (840)
T ss_pred             h-hhhhhhh
Confidence            4 4443333

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.30  E-value=0.0025  Score=63.39  Aligned_cols=92  Identities=17%  Similarity=0.096  Sum_probs=57.0

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCC------CCC-------hHHHHHHHH------HHHHhhhHHHHHHHh
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT------SFG-------DEEKKQAKA------LKVACNLNNAACKLK  460 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~------~~~-------~~~~~~~~~------~~~~~~~N~a~~~~k  460 (496)
                      ..+-.+||..|..|+|.+|.+.|+.||+--..+.      .+.       ++...-+-.      ..+.++..+|..|--
T Consensus       491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~  570 (840)
T KOG2003|consen  491 AALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL  570 (840)
T ss_pred             HHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3456789999999999999999999997421110      000       111111111      223334455666666


Q ss_pred             ccCHHHHHHHHHHHhcccCCCcchhcccccc
Q 011003          461 LKDYKQAEKLCTKKCESSVQKGSGIHSDGRF  491 (496)
Q Consensus       461 l~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a  491 (496)
                      +++...||+.+.+|..+-|+++..|-..|..
T Consensus       571 led~aqaie~~~q~~slip~dp~ilskl~dl  601 (840)
T KOG2003|consen  571 LEDPAQAIELLMQANSLIPNDPAILSKLADL  601 (840)
T ss_pred             hhCHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence            7777777777777777777777666555543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=96.26  E-value=0.012  Score=51.09  Aligned_cols=81  Identities=20%  Similarity=0.200  Sum_probs=61.0

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .....|..++..|+|++|+..|.+++..-. +           ..+...+.+++|.+++.+++|.+|+..++.+ .-.+-
T Consensus        50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~-d-----------~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~  116 (145)
T PF09976_consen   50 AALQLAKAAYEQGDYDEAKAALEKALANAP-D-----------PELKPLARLRLARILLQQGQYDEALATLQQI-PDEAF  116 (145)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-C-----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcch
Confidence            345578889999999999999999998531 1           4566778889999999999999999999763 22333


Q ss_pred             Ccchhccccccccc
Q 011003          481 KGSGIHSDGRFRFG  494 (496)
Q Consensus       481 ~~Ka~~rrg~a~~~  494 (496)
                      ...++..+|.+|+.
T Consensus       117 ~~~~~~~~Gdi~~~  130 (145)
T PF09976_consen  117 KALAAELLGDIYLA  130 (145)
T ss_pred             HHHHHHHHHHHHHH
Confidence            34455566666554

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.24  E-value=0.014  Score=48.75  Aligned_cols=67  Identities=18%  Similarity=0.024  Sum_probs=54.8

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      +-+.+..+-..|+.++|+..|.+|+..-..            .+....++.++|.++..+|++++|+...++++...|+
T Consensus         4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~------------~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~   70 (120)
T PF12688_consen    4 LYELAWAHDSLGREEEAIPLYRRALAAGLS------------GADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD   70 (120)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            345677778899999999999999985211            3344568889999999999999999999999988777

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=96.23  E-value=0.027  Score=42.57  Aligned_cols=69  Identities=14%  Similarity=0.221  Sum_probs=57.7

Q ss_pred             HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE  476 (496)
Q Consensus       397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  476 (496)
                      ..+....++|-.+|.+.+.++|+++++++|+-...            .+.+-.++.-++.+|...|+|.++++.+..=++
T Consensus         4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~------------~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~   71 (80)
T PF10579_consen    4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITD------------REDRFRVLGYLIQAHMEWGKYREMLAFALQQLE   71 (80)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667789999999999999999999999998654            334567778899999999999999998877555


Q ss_pred             c
Q 011003          477 S  477 (496)
Q Consensus       477 ~  477 (496)
                      +
T Consensus        72 ~   72 (80)
T PF10579_consen   72 I   72 (80)
T ss_pred             H
Confidence            4

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.22  E-value=0.0019  Score=40.87  Aligned_cols=34  Identities=26%  Similarity=0.275  Sum_probs=29.6

Q ss_pred             HHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHH
Q 011003          421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK  469 (496)
Q Consensus       421 ~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~  469 (496)
                      +|++||++               ++....+|+|+|.+|...|++.+|++
T Consensus         1 ~y~kAie~---------------~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIEL---------------NPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHH---------------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            37889988               56669999999999999999999973

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.18  E-value=0.0026  Score=47.82  Aligned_cols=41  Identities=17%  Similarity=0.136  Sum_probs=37.6

Q ss_pred             HHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003          455 AACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       455 a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      +..|++.++|.+|++.+++++.++|+++.+|+.+|.++..+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~   42 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQL   42 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHh
Confidence            56789999999999999999999999999999999888654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=96.17  E-value=0.0059  Score=68.16  Aligned_cols=91  Identities=10%  Similarity=-0.100  Sum_probs=57.6

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCC-------------CChHH------HHHHHHHHHHhhhHHHHHHHhcc
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-------------FGDEE------KKQAKALKVACNLNNAACKLKLK  462 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~-------------~~~~~------~~~~~~~~~~~~~N~a~~~~kl~  462 (496)
                      +...|..+.+.|++.+|+..|+++++.-+....             ..++-      ..+..+.... +.++|.++..++
T Consensus        52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g  130 (765)
T PRK10049         52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAG  130 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCC
Confidence            556777888999999999999999887432210             00000      0111222234 666777777777


Q ss_pred             CHHHHHHHHHHHhcccCCCcchhcccccccc
Q 011003          463 DYKQAEKLCTKKCESSVQKGSGIHSDGRFRF  493 (496)
Q Consensus       463 ~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~  493 (496)
                      ++.+|+..++++++++|++..+++.+|.++.
T Consensus       131 ~~~~Al~~l~~al~~~P~~~~~~~~la~~l~  161 (765)
T PRK10049        131 RHWDELRAMTQALPRAPQTQQYPTEYVQALR  161 (765)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            7777777777777777777777666665543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=96.15  E-value=0.0044  Score=65.58  Aligned_cols=82  Identities=18%  Similarity=0.028  Sum_probs=67.2

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHH--HHHHHhc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK--LCTKKCE  476 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~--~~~~al~  476 (496)
                      +..+...|..+-.+|++.+|.+.|..|+.+               ++....+..-+|.|+++.|+-.-|.+  -...+++
T Consensus       684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~l---------------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr  748 (799)
T KOG4162|consen  684 ASVYYLRGLLLEVKGQLEEAKEAFLVALAL---------------DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR  748 (799)
T ss_pred             HHHHHHhhHHHHHHHhhHHHHHHHHHHHhc---------------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence            344567778888889999999999999988               44457777788999999998888877  8888999


Q ss_pred             ccCCCcchhcccccccccc
Q 011003          477 SSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       477 ~dp~~~Ka~~rrg~a~~~l  495 (496)
                      +||.|.+|||..|+.+..+
T Consensus       749 ~dp~n~eaW~~LG~v~k~~  767 (799)
T KOG4162|consen  749 LDPLNHEAWYYLGEVFKKL  767 (799)
T ss_pred             hCCCCHHHHHHHHHHHHHc
Confidence            9999999999888876654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.14  E-value=0.015  Score=55.90  Aligned_cols=71  Identities=11%  Similarity=0.049  Sum_probs=61.1

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .+.-.|..+|..|+|..|+..|.+.++.++..            +....++.+++.|+.+++++.+|+..++++++..|+
T Consensus       182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s------------~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~  249 (263)
T PRK10803        182 ANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS------------PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG  249 (263)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------------cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            34567888999999999999999999886653            344677888999999999999999999999999998


Q ss_pred             Ccc
Q 011003          481 KGS  483 (496)
Q Consensus       481 ~~K  483 (496)
                      +.-
T Consensus       250 s~~  252 (263)
T PRK10803        250 TDG  252 (263)
T ss_pred             CHH
Confidence            764

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=96.10  E-value=0.013  Score=59.54  Aligned_cols=34  Identities=9%  Similarity=-0.026  Sum_probs=18.6

Q ss_pred             HHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003          448 VACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK  481 (496)
Q Consensus       448 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~  481 (496)
                      ..++.+++.++.+.++|.+|++.+.++++.+|.+
T Consensus       141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  174 (389)
T PRK11788        141 EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS  174 (389)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc
Confidence            3445555555555555555555555555555443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=96.08  E-value=0.0067  Score=65.83  Aligned_cols=78  Identities=15%  Similarity=0.085  Sum_probs=64.4

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      -+..+..++.-+|.+++|..|+..|++|++..+...              +-...-++.|+.|+++-+.|+....+||++
T Consensus       163 Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~--------------aD~rIgig~Cf~kl~~~~~a~~a~~ralqL  228 (1018)
T KOG2002|consen  163 NILALLGKARIAYNKKDYRGALKYYKKALRINPACK--------------ADVRIGIGHCFWKLGMSEKALLAFERALQL  228 (1018)
T ss_pred             chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC--------------CCccchhhhHHHhccchhhHHHHHHHHHhc
Confidence            345667788899999999999999999999865432              233445789999999999999999999999


Q ss_pred             cCCCcchhcccc
Q 011003          478 SVQKGSGIHSDG  489 (496)
Q Consensus       478 dp~~~Ka~~rrg  489 (496)
                      ||.++.|+.-.|
T Consensus       229 dp~~v~alv~L~  240 (1018)
T KOG2002|consen  229 DPTCVSALVALG  240 (1018)
T ss_pred             ChhhHHHHHHHH
Confidence            999988876554

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.07  E-value=0.0031  Score=65.69  Aligned_cols=95  Identities=16%  Similarity=0.042  Sum_probs=71.9

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCC--------C--CChHHHH---------HHHHHHHHhhhHHHHHHHh
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT--------S--FGDEEKK---------QAKALKVACNLNNAACKLK  460 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~--------~--~~~~~~~---------~~~~~~~~~~~N~a~~~~k  460 (496)
                      +.+...||-+--+++++.|+++|++|+.+-+...        +  ..+|-..         .+++-...+|.-++.+|+|
T Consensus       422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K  501 (638)
T KOG1126|consen  422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK  501 (638)
T ss_pred             HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec
Confidence            4677889999999999999999999998744210        1  1112111         1233446678899999999


Q ss_pred             ccCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003          461 LKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       461 l~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~  494 (496)
                      +++++.|..++.+|+++||.|.-.+..-|+.+..
T Consensus       502 qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~  535 (638)
T KOG1126|consen  502 QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ  535 (638)
T ss_pred             cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH
Confidence            9999999999999999999998777766665543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.04  E-value=0.0074  Score=37.37  Aligned_cols=32  Identities=22%  Similarity=0.259  Sum_probs=29.7

Q ss_pred             hhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003          450 CNLNNAACKLKLKDYKQAEKLCTKKCESSVQK  481 (496)
Q Consensus       450 ~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~  481 (496)
                      ++.++|.||.++|++.+|+..++++++..|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            57899999999999999999999999999874

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.01  E-value=0.0017  Score=41.08  Aligned_cols=26  Identities=8%  Similarity=0.071  Sum_probs=23.1

Q ss_pred             HHHHHhcccCCCcchhcccccccccc
Q 011003          470 LCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       470 ~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      .|++||+++|+|+.||+++|.+|..+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~   26 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQ   26 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHC
Confidence            37899999999999999999988654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=95.99  E-value=0.01  Score=63.95  Aligned_cols=95  Identities=13%  Similarity=0.031  Sum_probs=68.9

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCC----------CChHHHHHHHHHHH---------HhhhHHHHHHH
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS----------FGDEEKKQAKALKV---------ACNLNNAACKL  459 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~----------~~~~~~~~~~~~~~---------~~~~N~a~~~~  459 (496)
                      +..+..++|.+|.+|++.+|.+....+|+.-+....          .-.+..+.+.....         ..|.-+|--..
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~  218 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE  218 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            678889999999999999999999999987432210          00011112222222         33334555566


Q ss_pred             hccCHHHHHHHHHHHhcccCCCcchhcccccccc
Q 011003          460 KLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRF  493 (496)
Q Consensus       460 kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~  493 (496)
                      ++++|++|+-++++||+++|.|.+-+|+|+..|.
T Consensus       219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~  252 (895)
T KOG2076|consen  219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQ  252 (895)
T ss_pred             hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            7889999999999999999999999999987765

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.96  E-value=0.0031  Score=48.23  Aligned_cols=51  Identities=14%  Similarity=0.087  Sum_probs=39.3

Q ss_pred             HHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc-------CCCcchhcccccccccc
Q 011003          445 ALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS-------VQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       445 ~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d-------p~~~Ka~~rrg~a~~~l  495 (496)
                      +....+++|+|.+|..+++|.+|+..+++||++.       |.-+.++++.|.++..+
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~   59 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRL   59 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc
Confidence            3557889999999999999999999999999762       12256777777776543

...

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=95.93  E-value=0.025  Score=55.09  Aligned_cols=71  Identities=24%  Similarity=0.315  Sum_probs=54.1

Q ss_pred             HHhhhHHhhhhhHhc-ccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003          398 AAGKKKEQGNTLFKA-GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE  476 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~-~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  476 (496)
                      .+..++..|..+... +++++|+..|++|+.++....         .......++.+.|.++.++++|.+|++.++++..
T Consensus       113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~---------~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~  183 (282)
T PF14938_consen  113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG---------SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK  183 (282)
T ss_dssp             HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC---------ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            345555666666667 899999999999999976532         1445578899999999999999999999999876


Q ss_pred             c
Q 011003          477 S  477 (496)
Q Consensus       477 ~  477 (496)
                      .
T Consensus       184 ~  184 (282)
T PF14938_consen  184 K  184 (282)
T ss_dssp             T
T ss_pred             H
Confidence            4

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=95.92  E-value=0.021  Score=50.85  Aligned_cols=75  Identities=13%  Similarity=-0.028  Sum_probs=52.4

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHH-------
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT-------  472 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~-------  472 (496)
                      ..+...|..+...|++.+|+..|.+|+++-+..        .........++.|++..+.+++++.+|+.+++       
T Consensus        73 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~--------~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  144 (168)
T CHL00033         73 YILYNIGLIHTSNGEHTKALEYYFQALERNPFL--------PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWK  144 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--------HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHH
Confidence            356677889999999999999999999872221        11233445556666666669999886665555       


Q ss_pred             HHhcccCCCc
Q 011003          473 KKCESSVQKG  482 (496)
Q Consensus       473 ~al~~dp~~~  482 (496)
                      +++..+|.+.
T Consensus       145 ~a~~~~p~~~  154 (168)
T CHL00033        145 QAIALAPGNY  154 (168)
T ss_pred             HHHHhCcccH
Confidence            5677788654

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.74  E-value=0.009  Score=56.64  Aligned_cols=64  Identities=22%  Similarity=0.314  Sum_probs=55.4

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      |..+...|.-+|+.|+|+.|+++|+.|+..               ......+-.|+|+|+++.++|..|++...+.++.
T Consensus       144 Ad~~in~gCllykegqyEaAvqkFqaAlqv---------------sGyqpllAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  144 ADGQINLGCLLYKEGQYEAAVQKFQAALQV---------------SGYQPLLAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             cchhccchheeeccccHHHHHHHHHHHHhh---------------cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            456677899999999999999999999997               3334667789999999999999999999998864

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=95.64  E-value=0.021  Score=57.94  Aligned_cols=71  Identities=17%  Similarity=0.005  Sum_probs=48.2

Q ss_pred             HhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccc
Q 011003          410 FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDG  489 (496)
Q Consensus       410 fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg  489 (496)
                      +..++..+|++..+++++..+.+               ..++.-.|..+++.++++.|+..+.+|.++.|++.++||..|
T Consensus       211 l~~~~E~~AI~ll~~aL~~~p~d---------------~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La  275 (395)
T PF09295_consen  211 LLMNEEVEAIRLLNEALKENPQD---------------SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLA  275 (395)
T ss_pred             HhcCcHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            34455566666666666542222               556666777777777777777777777777777777777777


Q ss_pred             cccccc
Q 011003          490 RFRFGR  495 (496)
Q Consensus       490 ~a~~~l  495 (496)
                      ++|..+
T Consensus       276 ~~Yi~~  281 (395)
T PF09295_consen  276 ECYIQL  281 (395)
T ss_pred             HHHHhc
Confidence            777654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=95.58  E-value=0.0048  Score=45.62  Aligned_cols=38  Identities=18%  Similarity=0.129  Sum_probs=34.7

Q ss_pred             HHhccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003          458 KLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       458 ~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      .++.|+|.+|+..++++++.+|+|..+++..|++|+..
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~   38 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQ   38 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHT
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence            36789999999999999999999999999999988754

...

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=95.57  E-value=0.036  Score=57.86  Aligned_cols=75  Identities=27%  Similarity=0.210  Sum_probs=62.5

Q ss_pred             HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE  476 (496)
Q Consensus       397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  476 (496)
                      +.+..+.+.+..+-..++|++|...|+++++++......       .+......+.|+|.+|+++|+|++|.+.+.+||.
T Consensus       323 ~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~-------~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~  395 (508)
T KOG1840|consen  323 EVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE-------DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ  395 (508)
T ss_pred             HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc-------cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            456667778888888999999999999999997633222       1456688999999999999999999999999998


Q ss_pred             cc
Q 011003          477 SS  478 (496)
Q Consensus       477 ~d  478 (496)
                      +.
T Consensus       396 ~~  397 (508)
T KOG1840|consen  396 IL  397 (508)
T ss_pred             HH
Confidence            64

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=95.57  E-value=0.0094  Score=52.69  Aligned_cols=66  Identities=17%  Similarity=0.096  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccC----------HHHHHHHHHHHhcccCCCcch
Q 011003          415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD----------YKQAEKLCTKKCESSVQKGSG  484 (496)
Q Consensus       415 y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~----------~~~Ai~~~~~al~~dp~~~Ka  484 (496)
                      |+.|.+.|+.+...               ++.....++|-+.+++.+-+          +++|+.-+++||.++|+...|
T Consensus         7 FE~ark~aea~y~~---------------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdA   71 (186)
T PF06552_consen    7 FEHARKKAEAAYAK---------------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDA   71 (186)
T ss_dssp             HHHHHHHHHHHHHH----------------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred             HHHHHHHHHHHHHh---------------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence            56677777776665               55557777777777776633          678899999999999999999


Q ss_pred             hcccccccccc
Q 011003          485 IHSDGRFRFGR  495 (496)
Q Consensus       485 ~~rrg~a~~~l  495 (496)
                      +|..|.||..+
T Consensus        72 lw~lGnA~ts~   82 (186)
T PF06552_consen   72 LWCLGNAYTSL   82 (186)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=95.54  E-value=0.029  Score=61.05  Aligned_cols=82  Identities=16%  Similarity=0.156  Sum_probs=69.6

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK  481 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~  481 (496)
                      +---+|.+|-+|+|..+...+..|+...            ....+.+..+.++|.||..+|+|.+|..++-++++.+++|
T Consensus       273 l~~LAn~fyfK~dy~~v~~la~~ai~~t------------~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~  340 (1018)
T KOG2002|consen  273 LNHLANHFYFKKDYERVWHLAEHAIKNT------------ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN  340 (1018)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhh------------hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC
Confidence            3446788999999999999999999863            2256777889999999999999999999999999999999


Q ss_pred             -cchhcccccccccc
Q 011003          482 -GSGIHSDGRFRFGR  495 (496)
Q Consensus       482 -~Ka~~rrg~a~~~l  495 (496)
                       +=++|..||.++..
T Consensus       341 ~~l~~~GlgQm~i~~  355 (1018)
T KOG2002|consen  341 FVLPLVGLGQMYIKR  355 (1018)
T ss_pred             ccccccchhHHHHHh
Confidence             88888888877643

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=95.38  E-value=0.038  Score=56.04  Aligned_cols=74  Identities=19%  Similarity=0.089  Sum_probs=59.1

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +.-+..++..+.++++|+.|+...++|+++.               +.....|..+|.||.++++|++|+..++.+= +.
T Consensus       234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls---------------P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P-m~  297 (395)
T PF09295_consen  234 SELLNLQAEFLLSKKKYELALEIAKKAVELS---------------PSEFETWYQLAECYIQLGDFENALLALNSCP-ML  297 (395)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---------------chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc-CC
Confidence            4455678889999999999999999999994               4448889999999999999999998888554 33


Q ss_pred             CCCcchhccc
Q 011003          479 VQKGSGIHSD  488 (496)
Q Consensus       479 p~~~Ka~~rr  488 (496)
                      +.+.|-.++|
T Consensus       298 ~~~~k~~~~~  307 (395)
T PF09295_consen  298 TYKDKYKLKR  307 (395)
T ss_pred             CCccchhhhc
Confidence            4444544443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.20  E-value=0.029  Score=36.69  Aligned_cols=31  Identities=19%  Similarity=0.069  Sum_probs=27.2

Q ss_pred             HHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          448 VACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       448 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +.+++|+|.+|..+++|.+|+..+.+++++-
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            4678999999999999999999999998763

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=95.16  E-value=0.029  Score=49.69  Aligned_cols=60  Identities=13%  Similarity=0.118  Sum_probs=45.6

Q ss_pred             ccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccC-----------HHHHHHHHHHHhcccCCC
Q 011003          413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD-----------YKQAEKLCTKKCESSVQK  481 (496)
Q Consensus       413 ~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~-----------~~~Ai~~~~~al~~dp~~  481 (496)
                      .-+++|+.+|++||.+               ++.+..++.|++.+|..++.           |++|..++.+|.+.+|+|
T Consensus        49 ~miedAisK~eeAL~I---------------~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n  113 (186)
T PF06552_consen   49 KMIEDAISKFEEALKI---------------NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN  113 (186)
T ss_dssp             HHHHHHHHHHHHHHHH----------------TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred             HHHHHHHHHHHHHHhc---------------CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            3478888888888888               77778889999999987644           899999999999999997


Q ss_pred             cchhcccc
Q 011003          482 GSGIHSDG  489 (496)
Q Consensus       482 ~Ka~~rrg  489 (496)
                      .  +||++
T Consensus       114 e--~Y~ks  119 (186)
T PF06552_consen  114 E--LYRKS  119 (186)
T ss_dssp             H--HHHHH
T ss_pred             H--HHHHH
Confidence            4  45543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.09  E-value=0.033  Score=52.65  Aligned_cols=81  Identities=15%  Similarity=0.128  Sum_probs=64.7

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK  481 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~  481 (496)
                      +-+.+-.+++.|+|..|...|..-++-++...            ....++.=|+.|++.+++|.+|...+..+.+-.|++
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~------------~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s  211 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNST------------YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS  211 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc------------ccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC
Confidence            77888899999999999999999998877642            224455567889999999999999999999888888


Q ss_pred             cch---hccccccccc
Q 011003          482 GSG---IHSDGRFRFG  494 (496)
Q Consensus       482 ~Ka---~~rrg~a~~~  494 (496)
                      .||   +|..|.++..
T Consensus       212 ~KApdallKlg~~~~~  227 (262)
T COG1729         212 PKAPDALLKLGVSLGR  227 (262)
T ss_pred             CCChHHHHHHHHHHHH
Confidence            764   7777766543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.99  E-value=0.03  Score=56.30  Aligned_cols=97  Identities=15%  Similarity=0.106  Sum_probs=76.5

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCC----CCChH---------------HHHHHHHHHHHhhhHHHHHHH
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT----SFGDE---------------EKKQAKALKVACNLNNAACKL  459 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~----~~~~~---------------~~~~~~~~~~~~~~N~a~~~~  459 (496)
                      ...+--.|.++..-++-..|+..|.+|+++.+.+.    .+.+.               ...++.+....++.-++.||.
T Consensus       364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~  443 (559)
T KOG1155|consen  364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYE  443 (559)
T ss_pred             hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            33444578888889999999999999999876542    22221               113445566788889999999


Q ss_pred             hccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003          460 KLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       460 kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      |+++..+||+++..|+...-.+.-||+|.|++|-.|
T Consensus       444 kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l  479 (559)
T KOG1155|consen  444 KLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEEL  479 (559)
T ss_pred             HhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            999999999999999999888899999999987543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=94.98  E-value=0.037  Score=61.62  Aligned_cols=96  Identities=14%  Similarity=-0.024  Sum_probs=68.1

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCC-C----------CCh--HHHHHHH------HHHHHhhhHHHHHH
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-S----------FGD--EEKKQAK------ALKVACNLNNAACK  458 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~-~----------~~~--~~~~~~~------~~~~~~~~N~a~~~  458 (496)
                      .+....+++-..+++|+|..|+..|.++++.-+... .          ...  +-...++      ......+..+|.+|
T Consensus        33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly  112 (822)
T PRK14574         33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY  112 (822)
T ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence            344677889999999999999999999998755431 1          000  0001111      11133445567899


Q ss_pred             HhccCHHHHHHHHHHHhcccCCCcchhcccccccc
Q 011003          459 LKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRF  493 (496)
Q Consensus       459 ~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~  493 (496)
                      ..+++|.+|++.++++|+.+|+|+.+++-.+.++.
T Consensus       113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~  147 (822)
T PRK14574        113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQA  147 (822)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Confidence            99999999999999999999999998875554443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=94.81  E-value=0.036  Score=53.83  Aligned_cols=76  Identities=16%  Similarity=0.055  Sum_probs=54.4

Q ss_pred             hhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcch
Q 011003          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSG  484 (496)
Q Consensus       405 ~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka  484 (496)
                      ....++..+++.++.....++.....             .+....++.-+|.++.+.|++.+|+.++.+||+++|+|..+
T Consensus       116 ~l~~~~~~~~~~~~~~~l~~~~~~~~-------------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~  182 (280)
T PF13429_consen  116 ALQLYYRLGDYDEAEELLEKLEELPA-------------APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDA  182 (280)
T ss_dssp             --H-HHHTT-HHHHHHHHHHHHH-T----------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhccC-------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence            34456677888888888888664311             12336778899999999999999999999999999999998


Q ss_pred             hcccccccc
Q 011003          485 IHSDGRFRF  493 (496)
Q Consensus       485 ~~rrg~a~~  493 (496)
                      +...+.++.
T Consensus       183 ~~~l~~~li  191 (280)
T PF13429_consen  183 RNALAWLLI  191 (280)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHH
Confidence            877766655

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=94.69  E-value=0.067  Score=56.57  Aligned_cols=65  Identities=11%  Similarity=-0.032  Sum_probs=56.0

Q ss_pred             hhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcch
Q 011003          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSG  484 (496)
Q Consensus       405 ~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka  484 (496)
                      .|-.+..+|++++|...|++|+.+               ++ ....|..++.++...|++++|++.+.+|++++|.++.-
T Consensus       426 la~~~~~~g~~~~A~~~l~rAl~L---------------~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~  489 (517)
T PRK10153        426 LAVQALVKGKTDEAYQAINKAIDL---------------EM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL  489 (517)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc---------------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence            455556789999999999999998               33 25689999999999999999999999999999998753


Q ss_pred             h
Q 011003          485 I  485 (496)
Q Consensus       485 ~  485 (496)
                      |
T Consensus       490 ~  490 (517)
T PRK10153        490 Y  490 (517)
T ss_pred             H
Confidence            3

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=94.66  E-value=0.034  Score=55.80  Aligned_cols=62  Identities=16%  Similarity=0.034  Sum_probs=43.8

Q ss_pred             HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      ..|..+...|++.+|...|.++++.-+.+               ..++.++|.+++.++++++|+..+++++...|.
T Consensus       119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~---------------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~  180 (355)
T cd05804         119 MLAFGLEEAGQYDRAEEAARRALELNPDD---------------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC  180 (355)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence            45667788899999999999999874332               455666666666666666666666666666553

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK15331 chaperone protein SicA; Provisional

Probab=94.64  E-value=0.046  Score=47.87  Aligned_cols=74  Identities=11%  Similarity=0.152  Sum_probs=55.7

Q ss_pred             HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcc
Q 011003          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGS  483 (496)
Q Consensus       404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~K  483 (496)
                      .-|-.+-..++|++|+..|..|..+-..+               ...+...|.||+.+++...|+.++..|++ .|. -.
T Consensus        76 GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d---------------p~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~-~~  138 (165)
T PRK15331         76 GLAAVCQLKKQFQKACDLYAVAFTLLKND---------------YRPVFFTGQCQLLMRKAAKARQCFELVNE-RTE-DE  138 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccCC---------------CCccchHHHHHHHhCCHHHHHHHHHHHHh-Ccc-hH
Confidence            34444456889999999999998874433               34467899999999999999999999998 354 33


Q ss_pred             hhccccccccc
Q 011003          484 GIHSDGRFRFG  494 (496)
Q Consensus       484 a~~rrg~a~~~  494 (496)
                      .+-+||++++.
T Consensus       139 ~l~~~A~~~L~  149 (165)
T PRK15331        139 SLRAKALVYLE  149 (165)
T ss_pred             HHHHHHHHHHH
Confidence            45566766653

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=94.58  E-value=0.15  Score=41.86  Aligned_cols=70  Identities=19%  Similarity=0.210  Sum_probs=56.1

Q ss_pred             HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      .....+.+.|+|.+++..-.+||.|++...++++++.    .+.+.+-.|||.++--+|+..+|+..+.++-++
T Consensus        60 ~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG----klWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   60 GLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG----KLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH----HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc----hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            3445667899999999999999999998888877764    456778889999999999999999999998764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=94.55  E-value=0.097  Score=52.51  Aligned_cols=93  Identities=13%  Similarity=0.028  Sum_probs=68.4

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCC-------------CCh--HH-HHH------HHHHHHHhhhHHHHHHH
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-------------FGD--EE-KKQ------AKALKVACNLNNAACKL  459 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~-------------~~~--~~-~~~------~~~~~~~~~~N~a~~~~  459 (496)
                      ..-++..++..|++.+|+..+.++++..+.+..             ...  .. ...      ..+.....+.++|.+++
T Consensus        46 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~  125 (355)
T cd05804          46 AHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLE  125 (355)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHH
Confidence            334677889999999999999999987543320             000  00 011      11222456678999999


Q ss_pred             hccCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003          460 KLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       460 kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~  494 (496)
                      .+|++.+|+..|+++++++|++.-+++..|.++..
T Consensus       126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~  160 (355)
T cd05804         126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM  160 (355)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence            99999999999999999999999888888877654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.49  E-value=0.026  Score=55.10  Aligned_cols=64  Identities=20%  Similarity=0.176  Sum_probs=48.7

Q ss_pred             cHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccccc
Q 011003          414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFR  492 (496)
Q Consensus       414 ~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~  492 (496)
                      +|.+|...|+.....+.               ....+++.+|.|++.+++|.+|...+.+||+.+|+++.++..++.+.
T Consensus       182 ~~~~A~y~f~El~~~~~---------------~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~  245 (290)
T PF04733_consen  182 KYQDAFYIFEELSDKFG---------------STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCS  245 (290)
T ss_dssp             CCCHHHHHHHHHHCCS-----------------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccC---------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            57777777777544322               12567888999999999999999999999999999999888876543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.31  E-value=0.2  Score=39.80  Aligned_cols=64  Identities=14%  Similarity=0.190  Sum_probs=49.1

Q ss_pred             hHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       409 ~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      ..+.++|..|+....+...+.........      .......++|+|.++...|++++|+..+++|+++-
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            45789999999999998887433211110      23345568899999999999999999999999874

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.30  E-value=0.076  Score=32.93  Aligned_cols=31  Identities=23%  Similarity=0.333  Sum_probs=26.0

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhc
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIE  430 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~  430 (496)
                      ..+...|..+++.|+|++|+..|.+|+++.+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            4456789999999999999999999999743

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=94.22  E-value=0.35  Score=39.88  Aligned_cols=83  Identities=18%  Similarity=0.040  Sum_probs=64.7

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHH----HHhc
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT----KKCE  476 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~----~al~  476 (496)
                      ++--.|+..++.+++-.|+-.|++|+.+.+.....++.+..++-...+...-|+|.-+..+++-+-.+++..    +++.
T Consensus         3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt   82 (140)
T PF10952_consen    3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT   82 (140)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence            344578999999999999999999999866543334445555666677778899999999999998888764    5677


Q ss_pred             ccCCCcc
Q 011003          477 SSVQKGS  483 (496)
Q Consensus       477 ~dp~~~K  483 (496)
                      +-|.+++
T Consensus        83 LiPQCp~   89 (140)
T PF10952_consen   83 LIPQCPN   89 (140)
T ss_pred             hccCCCC
Confidence            7787654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=94.19  E-value=0.23  Score=42.96  Aligned_cols=89  Identities=19%  Similarity=0.128  Sum_probs=66.3

Q ss_pred             HHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHH
Q 011003          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKK  474 (496)
Q Consensus       395 ~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  474 (496)
                      +.+.+...-+.....+..+++..+...+.+.++-.+.            ........+.+|.+++..++|.+|+..++++
T Consensus         7 ~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~   74 (145)
T PF09976_consen    7 QAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPS------------SPYAALAALQLAKAAYEQGDYDEAKAALEKA   74 (145)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3455666666777777788888877777776665332            2234666788999999999999999999999


Q ss_pred             hcccCCC---cchhcccccccccc
Q 011003          475 CESSVQK---GSGIHSDGRFRFGR  495 (496)
Q Consensus       475 l~~dp~~---~Ka~~rrg~a~~~l  495 (496)
                      +...|+.   ..|.+|.|++++.+
T Consensus        75 ~~~~~d~~l~~~a~l~LA~~~~~~   98 (145)
T PF09976_consen   75 LANAPDPELKPLARLRLARILLQQ   98 (145)
T ss_pred             HhhCCCHHHHHHHHHHHHHHHHHc
Confidence            9987655   45888888887653

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=94.09  E-value=0.074  Score=50.80  Aligned_cols=81  Identities=14%  Similarity=0.097  Sum_probs=64.8

Q ss_pred             HHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHh
Q 011003          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKC  475 (496)
Q Consensus       396 ~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  475 (496)
                      ...|......+...++.|+.++|...|..|+.+.+.               ...++.-++...-.-++.-+|-.++.+||
T Consensus       113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~---------------~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL  177 (472)
T KOG3824|consen  113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPT---------------NPQILIEMGQFREMHNEIVEADQCYVKAL  177 (472)
T ss_pred             hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCC---------------CHHHHHHHhHHHHhhhhhHhhhhhhheee
Confidence            334444445667788999999999999999998443               35666667776666778889999999999


Q ss_pred             cccCCCcchhcccccc
Q 011003          476 ESSVQKGSGIHSDGRF  491 (496)
Q Consensus       476 ~~dp~~~Ka~~rrg~a  491 (496)
                      .++|.|.+|+-.|++.
T Consensus       178 tisP~nseALvnR~RT  193 (472)
T KOG3824|consen  178 TISPGNSEALVNRART  193 (472)
T ss_pred             eeCCCchHHHhhhhcc
Confidence            9999999999999864

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.05  E-value=0.065  Score=51.65  Aligned_cols=72  Identities=13%  Similarity=0.043  Sum_probs=47.5

Q ss_pred             hhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC---CCcch
Q 011003          408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV---QKGSG  484 (496)
Q Consensus       408 ~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp---~~~Ka  484 (496)
                      .+|-.++-+-|++.|.+.|.+               -.....+++|+++|++--++|+-++..+.+||..--   .-...
T Consensus       333 ~yfY~~~PE~AlryYRRiLqm---------------G~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDv  397 (478)
T KOG1129|consen  333 GYFYDNNPEMALRYYRRILQM---------------GAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADV  397 (478)
T ss_pred             ccccCCChHHHHHHHHHHHHh---------------cCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhh
Confidence            344444555555555555554               222367888999999888888888888888887643   23567


Q ss_pred             hccccccccc
Q 011003          485 IHSDGRFRFG  494 (496)
Q Consensus       485 ~~rrg~a~~~  494 (496)
                      ||+.|....+
T Consensus       398 WYNlg~vaV~  407 (478)
T KOG1129|consen  398 WYNLGFVAVT  407 (478)
T ss_pred             hhccceeEEe
Confidence            8887766543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=94.04  E-value=0.063  Score=51.40  Aligned_cols=83  Identities=12%  Similarity=0.074  Sum_probs=53.3

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCC----------------CCChH------HHHHHHHHHHHhhhHHHH
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT----------------SFGDE------EKKQAKALKVACNLNNAA  456 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~----------------~~~~~------~~~~~~~~~~~~~~N~a~  456 (496)
                      ++.+---|..++..+++..|...|.+|+++.....                ..+.+      +-...++......+=+|.
T Consensus       156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~  235 (287)
T COG4235         156 AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAF  235 (287)
T ss_pred             chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence            45556678889999999999999999999854321                11111      112233344555555666


Q ss_pred             HHHhccCHHHHHHHHHHHhcccCCC
Q 011003          457 CKLKLKDYKQAEKLCTKKCESSVQK  481 (496)
Q Consensus       457 ~~~kl~~~~~Ai~~~~~al~~dp~~  481 (496)
                      .++..++|.+|+......|+..|.+
T Consensus       236 ~afe~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         236 AAFEQGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             HHHHcccHHHHHHHHHHHHhcCCCC
Confidence            6666666666666666666666654

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.03  E-value=0.13  Score=51.17  Aligned_cols=76  Identities=13%  Similarity=0.070  Sum_probs=66.3

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      ...+.-+|+.+...++..+|+-.|..|..+               .+.+..+|--+-.||+..+.+++|...++.+++.-
T Consensus       334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~L---------------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~  398 (564)
T KOG1174|consen  334 HEALILKGRLLIALERHTQAVIAFRTAQML---------------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF  398 (564)
T ss_pred             chHHHhccHHHHhccchHHHHHHHHHHHhc---------------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh
Confidence            455667888888999999999999988888               66778999999999999999999999999999999


Q ss_pred             CCCcchhcccc
Q 011003          479 VQKGSGIHSDG  489 (496)
Q Consensus       479 p~~~Ka~~rrg  489 (496)
                      |++++++---|
T Consensus       399 ~~sA~~LtL~g  409 (564)
T KOG1174|consen  399 QNSARSLTLFG  409 (564)
T ss_pred             hcchhhhhhhc
Confidence            99999876554

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=93.75  E-value=0.069  Score=52.99  Aligned_cols=75  Identities=13%  Similarity=0.174  Sum_probs=56.3

Q ss_pred             HHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHH
Q 011003          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (496)
Q Consensus       394 e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~  473 (496)
                      ++..+...+-..||.+|-.|+|..|+..-+.-|++.....         -+...-.+++|++.||.-+++|..|++++.+
T Consensus       190 Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG---------DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~  260 (639)
T KOG1130|consen  190 DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG---------DRAAERRAHSNLGNCHIFLGNFELAIEHYKL  260 (639)
T ss_pred             hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh---------hHHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence            3444555566678999999999999999988887743221         0334467789999999999999999999888


Q ss_pred             Hhcc
Q 011003          474 KCES  477 (496)
Q Consensus       474 al~~  477 (496)
                      +|.+
T Consensus       261 tl~L  264 (639)
T KOG1130|consen  261 TLNL  264 (639)
T ss_pred             HHHH
Confidence            7654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.71  E-value=0.11  Score=32.41  Aligned_cols=30  Identities=27%  Similarity=0.457  Sum_probs=25.8

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhh
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYI  429 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~  429 (496)
                      ..+-..|..++..++|.+|+..|++|+++-
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   31 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence            456678999999999999999999999973

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=93.26  E-value=0.26  Score=47.90  Aligned_cols=60  Identities=23%  Similarity=0.231  Sum_probs=38.2

Q ss_pred             hHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhc-cCHHHHHHHHHHHhcc
Q 011003          409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-KDYKQAEKLCTKKCES  477 (496)
Q Consensus       409 ~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl-~~~~~Ai~~~~~al~~  477 (496)
                      +|++.++.+|+..|.+|++++.....         ...-..++.++|..|.+. +++++|++.+.+|+++
T Consensus        84 ~~k~~~~~~Ai~~~~~A~~~y~~~G~---------~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~  144 (282)
T PF14938_consen   84 CYKKGDPDEAIECYEKAIEIYREAGR---------FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL  144 (282)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHCT----------HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred             HHHhhCHHHHHHHHHHHHHHHHhcCc---------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34444555555555555554422110         234477888999999998 9999999999999886

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.14  E-value=0.2  Score=52.39  Aligned_cols=74  Identities=18%  Similarity=0.234  Sum_probs=60.6

Q ss_pred             HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcc
Q 011003          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGS  483 (496)
Q Consensus       404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~K  483 (496)
                      .+|.-+..+|+.++|++.|++|+..           ..+...+...++..++.|++-+.+|.+|.+++.+.++.+ +|.|
T Consensus       272 ~~gR~~~~~g~~~~Ai~~~~~a~~~-----------q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSk  339 (468)
T PF10300_consen  272 FEGRLERLKGNLEEAIESFERAIES-----------QSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSK  339 (468)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHhccc-----------hhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHH
Confidence            4566667888999999999988853           123466778899999999999999999999999999864 7899


Q ss_pred             hhcccc
Q 011003          484 GIHSDG  489 (496)
Q Consensus       484 a~~rrg  489 (496)
                      |+|.-.
T Consensus       340 a~Y~Y~  345 (468)
T PF10300_consen  340 AFYAYL  345 (468)
T ss_pred             HHHHHH
Confidence            988653

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=93.00  E-value=0.07  Score=54.10  Aligned_cols=66  Identities=12%  Similarity=0.107  Sum_probs=60.1

Q ss_pred             hhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcch
Q 011003          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSG  484 (496)
Q Consensus       405 ~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka  484 (496)
                      ++-..++.++|..|++-..+|++.               .+....+|.-+|.+++++++|.+|+.++++...+.|+.++|
T Consensus        44 Ra~a~lK~e~~~~Al~Da~kaie~---------------dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~  108 (476)
T KOG0376|consen   44 RALAHLKVESFGGALHDALKAIEL---------------DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDA  108 (476)
T ss_pred             hhhhheeechhhhHHHHHHhhhhc---------------CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHH
Confidence            455677899999999999999998               67889999999999999999999999999999999998776


Q ss_pred             h
Q 011003          485 I  485 (496)
Q Consensus       485 ~  485 (496)
                      .
T Consensus       109 ~  109 (476)
T KOG0376|consen  109 T  109 (476)
T ss_pred             H
Confidence            3

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=92.99  E-value=0.17  Score=42.51  Aligned_cols=40  Identities=15%  Similarity=0.275  Sum_probs=35.1

Q ss_pred             HHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhc
Q 011003          447 KVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIH  486 (496)
Q Consensus       447 ~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~  486 (496)
                      +-.|..-+|..|.++++|.+++.+|+..|+.+|+|..|.-
T Consensus        70 rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~  109 (149)
T KOG3364|consen   70 RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE  109 (149)
T ss_pred             chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            3556777999999999999999999999999999987653

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.86  E-value=0.26  Score=48.16  Aligned_cols=77  Identities=13%  Similarity=0.122  Sum_probs=61.4

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp  479 (496)
                      +.....+...|.+-.|++||..|++.|.-               ++....+-.|+|+||.|+.=|.-+-+-..--|+.-|
T Consensus       152 EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---------------n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~p  216 (557)
T KOG3785|consen  152 EDQLSLASVHYMRMHYQEAIDVYKRVLQD---------------NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFP  216 (557)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHhc---------------ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCC
Confidence            44445666778888999999999999876               666788888999999999999888888777788888


Q ss_pred             CCcchhcccccc
Q 011003          480 QKGSGIHSDGRF  491 (496)
Q Consensus       480 ~~~Ka~~rrg~a  491 (496)
                      +..=|..-++..
T Consensus       217 dStiA~NLkacn  228 (557)
T KOG3785|consen  217 DSTIAKNLKACN  228 (557)
T ss_pred             CcHHHHHHHHHH
Confidence            877665555443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=92.70  E-value=0.16  Score=32.25  Aligned_cols=27  Identities=26%  Similarity=0.454  Sum_probs=23.0

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhh
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKY  428 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~  428 (496)
                      +...|+.+.+.|+|++|+..|+++|.+
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            456789999999999999999998865

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=92.57  E-value=0.3  Score=48.67  Aligned_cols=66  Identities=11%  Similarity=-0.044  Sum_probs=55.7

Q ss_pred             HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcc
Q 011003          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGS  483 (496)
Q Consensus       404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~K  483 (496)
                      ..+.-+-..|++..++....++|..+.+                ..+|.-++..+...+++++|++++.+||++||+|-+
T Consensus       443 ~~AEL~~~Eg~~~D~i~LLe~~L~~~~D----------------~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~  506 (564)
T KOG1174|consen  443 LIAELCQVEGPTKDIIKLLEKHLIIFPD----------------VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR  506 (564)
T ss_pred             HHHHHHHhhCccchHHHHHHHHHhhccc----------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence            3445556788888898888888886544                578889999999999999999999999999999987


Q ss_pred             hh
Q 011003          484 GI  485 (496)
Q Consensus       484 a~  485 (496)
                      ++
T Consensus       507 sl  508 (564)
T KOG1174|consen  507 TL  508 (564)
T ss_pred             HH
Confidence            65

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=92.45  E-value=0.67  Score=35.16  Aligned_cols=62  Identities=16%  Similarity=0.138  Sum_probs=40.6

Q ss_pred             HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccC--CCCChHHHHHHHHHHHHhhhHHHHHH
Q 011003          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD--TSFGDEEKKQAKALKVACNLNNAACK  458 (496)
Q Consensus       397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~N~a~~~  458 (496)
                      +.|..+-.++..+=+.|+|.+|+.+|.+|+.+|...  .+..++.....-..++.=|.+||...
T Consensus         4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eYl~RAE~L   67 (76)
T cd02681           4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDRAQAL   67 (76)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Confidence            346677778888889999999999999999987542  22122222222244455566666543

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=92.44  E-value=0.67  Score=34.97  Aligned_cols=64  Identities=17%  Similarity=0.098  Sum_probs=45.4

Q ss_pred             HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCC-CChHHHHHHHHHHHHhhhHHHHHHHh
Q 011003          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-FGDEEKKQAKALKVACNLNNAACKLK  460 (496)
Q Consensus       397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~N~a~~~~k  460 (496)
                      +.|..+-.++..+=+.|+|.+|+.+|++|+..|..... ..++....+-..++.=|.|||...-+
T Consensus         4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~   68 (75)
T cd02682           4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEK   68 (75)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677778888999999999999999999998754322 23333444455556667777765543

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=92.41  E-value=0.11  Score=50.19  Aligned_cols=67  Identities=18%  Similarity=0.329  Sum_probs=57.0

Q ss_pred             HHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCc
Q 011003          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKG  482 (496)
Q Consensus       403 k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~  482 (496)
                      -.++...+--|+|..|+.--++|+.+               ++...+++.--|.|++.|+.|.+|...|+..|+++-.+-
T Consensus       123 ~NRAAa~~~l~NyRs~l~Dcs~al~~---------------~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K  187 (390)
T KOG0551|consen  123 TNRAAAQLYLGNYRSALNDCSAALKL---------------KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK  187 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhc---------------CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            34555566678999999999999998               777899999999999999999999999999998875544


Q ss_pred             ch
Q 011003          483 SG  484 (496)
Q Consensus       483 Ka  484 (496)
                      +|
T Consensus       188 ~~  189 (390)
T KOG0551|consen  188 KA  189 (390)
T ss_pred             HH
Confidence            43

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.36  E-value=0.71  Score=41.48  Aligned_cols=69  Identities=20%  Similarity=0.219  Sum_probs=56.9

Q ss_pred             HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE  476 (496)
Q Consensus       397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  476 (496)
                      +.-..+.+.|+.+++-|++..|++.|.++..++..            ......+++|+..+.+-.++|..+....++|-.
T Consensus        34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~------------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS------------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            34456778999999999999999999999887543            455677788888889999999999998888855


Q ss_pred             c
Q 011003          477 S  477 (496)
Q Consensus       477 ~  477 (496)
                      +
T Consensus       102 ~  102 (177)
T PF10602_consen  102 L  102 (177)
T ss_pred             H
Confidence            4

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.20  E-value=0.24  Score=46.23  Aligned_cols=72  Identities=10%  Similarity=0.081  Sum_probs=45.3

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhc---cCHHHHHHHHHHHhc
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL---KDYKQAEKLCTKKCE  476 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl---~~~~~Ai~~~~~al~  476 (496)
                      +.+.+-++-++..++|++|.-+|.+.+-.               .|....++.-+|..++-+   .++.-|.+++.++|+
T Consensus       155 EAW~eLaeiY~~~~~f~kA~fClEE~ll~---------------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk  219 (289)
T KOG3060|consen  155 EAWHELAEIYLSEGDFEKAAFCLEELLLI---------------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK  219 (289)
T ss_pred             HHHHHHHHHHHhHhHHHHHHHHHHHHHHc---------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            34455566666777777777777776655               444455555556555543   456667777777777


Q ss_pred             ccCCCcchhc
Q 011003          477 SSVQKGSGIH  486 (496)
Q Consensus       477 ~dp~~~Ka~~  486 (496)
                      ++|.|..|||
T Consensus       220 l~~~~~ral~  229 (289)
T KOG3060|consen  220 LNPKNLRALF  229 (289)
T ss_pred             hChHhHHHHH
Confidence            7777766665

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=92.16  E-value=0.36  Score=47.39  Aligned_cols=98  Identities=16%  Similarity=0.225  Sum_probs=70.9

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCC-------CC----Ch----HH-------------HHHHHHHHHH
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------SF----GD----EE-------------KKQAKALKVA  449 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~-------~~----~~----~~-------------~~~~~~~~~~  449 (496)
                      ...+..+.|.++|...++++|+..|++.|.-+.+..       ..    .+    ++             ..+-......
T Consensus         5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e   84 (518)
T KOG1941|consen    5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE   84 (518)
T ss_pred             hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677899999999999999999999998764310       00    00    00             0122345677


Q ss_pred             hhhHHHHHHHhccCHHHHHHHHHHHhcccCCCc-----chhcccccccccc
Q 011003          450 CNLNNAACKLKLKDYKQAEKLCTKKCESSVQKG-----SGIHSDGRFRFGR  495 (496)
Q Consensus       450 ~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~-----Ka~~rrg~a~~~l  495 (496)
                      .|+|+|..+.++.+|.+++.+|...+.+-...+     .++.-.|.|+++|
T Consensus        85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgl  135 (518)
T KOG1941|consen   85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGL  135 (518)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhH
Confidence            899999999999999999999999998854333     4555566666664

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=92.15  E-value=0.28  Score=54.71  Aligned_cols=43  Identities=14%  Similarity=-0.001  Sum_probs=38.4

Q ss_pred             hHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003          452 LNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       452 ~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~  494 (496)
                      .=+=.||-++++|++++.....+|+++|.|.+|.+..+.+|++
T Consensus       227 ~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~  269 (906)
T PRK14720        227 EDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE  269 (906)
T ss_pred             HHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence            3344899999999999999999999999999999999988864

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.94  E-value=0.59  Score=35.60  Aligned_cols=62  Identities=19%  Similarity=0.210  Sum_probs=42.5

Q ss_pred             HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCC-CCChHHHHHHHHHHHHhhhHHHHHH
Q 011003          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-SFGDEEKKQAKALKVACNLNNAACK  458 (496)
Q Consensus       397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~N~a~~~  458 (496)
                      ..+..+-.+|..+=+.|+|.+|+.+|.+||.+|...- ...++.....-..+..-|.+||...
T Consensus         4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~L   66 (77)
T cd02683           4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEAI   66 (77)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677788899999999999999999999875432 1223344444455555666666543

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=91.80  E-value=0.2  Score=53.25  Aligned_cols=71  Identities=15%  Similarity=0.064  Sum_probs=60.9

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .+-..|....+.++++.|...|.+++.+               ++.....|+|++.+|+++++-.+|.....+||+.+-.
T Consensus       521 ~wf~~G~~ALqlek~q~av~aF~rcvtL---------------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~  585 (777)
T KOG1128|consen  521 TWFGLGCAALQLEKEQAAVKAFHRCVTL---------------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ  585 (777)
T ss_pred             HHHhccHHHHHHhhhHHHHHHHHHHhhc---------------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence            3445777778889999999999999988               5566889999999999999999999999999999987


Q ss_pred             Ccchhc
Q 011003          481 KGSGIH  486 (496)
Q Consensus       481 ~~Ka~~  486 (496)
                      |.+.|-
T Consensus       586 ~w~iWE  591 (777)
T KOG1128|consen  586 HWQIWE  591 (777)
T ss_pred             CCeeee
Confidence            777654

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=91.71  E-value=0.23  Score=55.27  Aligned_cols=44  Identities=9%  Similarity=-0.016  Sum_probs=38.9

Q ss_pred             HhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccccc
Q 011003          449 ACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFR  492 (496)
Q Consensus       449 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~  492 (496)
                      -++..+|.||-+++++++|+..++++|++||+|+-|+-+.|-.|
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~  160 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSY  160 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence            37888999999999999999999999999999999888777544

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=91.59  E-value=0.4  Score=50.64  Aligned_cols=70  Identities=26%  Similarity=0.177  Sum_probs=54.2

Q ss_pred             hhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhc
Q 011003          407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIH  486 (496)
Q Consensus       407 n~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~  486 (496)
                      .-+...|+|++|+....+..+.+.+               +..++--+|.+++++|++++|...+...|+.||+|..-|.
T Consensus        12 ~il~e~g~~~~AL~~L~~~~~~I~D---------------k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~   76 (517)
T PF12569_consen   12 SILEEAGDYEEALEHLEKNEKQILD---------------KLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYR   76 (517)
T ss_pred             HHHHHCCCHHHHHHHHHhhhhhCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence            3345678888888888776655332               3677788999999999999999999999999999986554


Q ss_pred             ccccc
Q 011003          487 SDGRF  491 (496)
Q Consensus       487 rrg~a  491 (496)
                      ....|
T Consensus        77 ~L~~~   81 (517)
T PF12569_consen   77 GLEEA   81 (517)
T ss_pred             HHHHH
Confidence            44333

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK14574 hmsH outer membrane protein; Provisional

Probab=91.58  E-value=0.23  Score=55.51  Aligned_cols=30  Identities=7%  Similarity=0.056  Sum_probs=23.7

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhhhcc
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~  431 (496)
                      ++..|..+...|+|.+|+..|+++++.-+.
T Consensus       105 llalA~ly~~~gdyd~Aiely~kaL~~dP~  134 (822)
T PRK14574        105 LASAARAYRNEKRWDQALALWQSSLKKDPT  134 (822)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            344466777889999999999999997543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=91.43  E-value=0.22  Score=52.59  Aligned_cols=52  Identities=15%  Similarity=-0.061  Sum_probs=46.3

Q ss_pred             HHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003          444 KALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       444 ~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      ......++..+|++|-.+|++++|++..++||+..|..+..|+.||+.|...
T Consensus       190 p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~  241 (517)
T PF12569_consen  190 PSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHA  241 (517)
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC
Confidence            4455677889999999999999999999999999999999999999887543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.33  E-value=0.62  Score=44.16  Aligned_cols=69  Identities=14%  Similarity=0.131  Sum_probs=59.4

Q ss_pred             hhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcch
Q 011003          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSG  484 (496)
Q Consensus       405 ~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka  484 (496)
                      -|..+|.+|+|..|...|.++++-++.....            ...++-++.|+..+++-++|...+.++++--|+...|
T Consensus       184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA------------pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA  251 (262)
T COG1729         184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKA------------PDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAA  251 (262)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHhCCCCCCC------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence            5778899999999999999999987664332            4567789999999999999999999999999988766


Q ss_pred             h
Q 011003          485 I  485 (496)
Q Consensus       485 ~  485 (496)
                      -
T Consensus       252 ~  252 (262)
T COG1729         252 K  252 (262)
T ss_pred             H
Confidence            4

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.89  E-value=0.89  Score=47.43  Aligned_cols=82  Identities=13%  Similarity=0.069  Sum_probs=64.0

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .+-..+..+...|+|.+|++...+|++++....+.++...+++......+...+|.++..+|+-.+|...+..+|+.+|-
T Consensus       177 l~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~  256 (652)
T KOG2376|consen  177 LLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA  256 (652)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC
Confidence            34456677778999999999999998887544333333344555666778889999999999999999999999999875


Q ss_pred             Cc
Q 011003          481 KG  482 (496)
Q Consensus       481 ~~  482 (496)
                      +.
T Consensus       257 D~  258 (652)
T KOG2376|consen  257 DE  258 (652)
T ss_pred             Cc
Confidence            53

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.88  E-value=0.83  Score=34.60  Aligned_cols=36  Identities=25%  Similarity=0.118  Sum_probs=31.1

Q ss_pred             HHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhcc
Q 011003          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (496)
Q Consensus       396 ~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~  431 (496)
                      ++.|..+-.+|...=..|+|++|+.+|..||.+|..
T Consensus         3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~   38 (75)
T cd02684           3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            456777778888899999999999999999998754

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.88  E-value=1.1  Score=33.93  Aligned_cols=61  Identities=21%  Similarity=0.201  Sum_probs=42.2

Q ss_pred             HHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccC-CCCChHHHHHHHHHHHHhhhHHHH
Q 011003          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-TSFGDEEKKQAKALKVACNLNNAA  456 (496)
Q Consensus       396 ~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~N~a~  456 (496)
                      +..|..+-.+|...=+.|+|.+|+.+|..|++++... ....++...+.-..+..=|++||.
T Consensus         3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~RAE   64 (75)
T cd02677           3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLKRAE   64 (75)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence            3456667777888888999999999999999987553 222334444445555555666663

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=90.87  E-value=0.79  Score=44.47  Aligned_cols=87  Identities=20%  Similarity=0.185  Sum_probs=67.6

Q ss_pred             ccChHHHHHHHhhhHHhhhhhHhcc-cHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHH
Q 011003          389 DMNTEEKIEAAGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQA  467 (496)
Q Consensus       389 ~~~~~e~~~~a~~~k~~Gn~~fk~~-~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~A  467 (496)
                      .+++....+.+..+-.-|..+++++ +|..|+...++|.++++... ..+.......+++..++..+|.||+..+.++..
T Consensus        25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~-~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~  103 (278)
T PF08631_consen   25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPG-KMDKLSPDGSELRLSILRLLANAYLEWDTYESV  103 (278)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhh-hccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            5567777888999999999999999 99999999999999986521 111223445678899999999999999987654


Q ss_pred             HHHHHHHhcc
Q 011003          468 EKLCTKKCES  477 (496)
Q Consensus       468 i~~~~~al~~  477 (496)
                      .+ |..+++.
T Consensus       104 ~k-a~~~l~~  112 (278)
T PF08631_consen  104 EK-ALNALRL  112 (278)
T ss_pred             HH-HHHHHHH
Confidence            44 6665543

It is also involved in sporulation [].

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.75  E-value=0.24  Score=46.55  Aligned_cols=64  Identities=17%  Similarity=0.216  Sum_probs=51.8

Q ss_pred             HHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK  481 (496)
Q Consensus       403 k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~  481 (496)
                      +..+-.+.-+++|..|.+.|.++++.               ++..+.+-+|-|+|++-+++..+|++..+.+++.+|..
T Consensus       256 ~n~a~i~lg~nn~a~a~r~~~~i~~~---------------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  256 MNSAFLHLGQNNFAEAHRFFTEILRM---------------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hhhhhheecccchHHHHHHHhhcccc---------------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            44444455688899999999988887               33347778899999999999999999999999999863

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=90.59  E-value=0.43  Score=43.96  Aligned_cols=61  Identities=15%  Similarity=0.095  Sum_probs=53.3

Q ss_pred             hhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCc
Q 011003          407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKG  482 (496)
Q Consensus       407 n~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~  482 (496)
                      ..+++.+++..|.+.|.+|+.+.+.+               ..-|..++....|.+++..|.+.++++|++||.+.
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w---------------~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEW---------------AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchh---------------hhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            34678899999999999999985544               67788889999999999999999999999999764

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=90.42  E-value=1.2  Score=33.02  Aligned_cols=35  Identities=23%  Similarity=0.332  Sum_probs=29.4

Q ss_pred             HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhcc
Q 011003          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (496)
Q Consensus       397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~  431 (496)
                      +.|..+-.+|..+=+.|+|.+|+.+|.+|+.+|..
T Consensus         3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~   37 (69)
T PF04212_consen    3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQ   37 (69)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            45666777888888899999999999999998754

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>TIGR00540 hemY_coli hemY protein

Probab=90.17  E-value=0.55  Score=48.36  Aligned_cols=100  Identities=16%  Similarity=0.137  Sum_probs=69.2

Q ss_pred             HHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCC-----------CCCh-HH-HHHHHH------HH-HHhhhHH
Q 011003          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-----------SFGD-EE-KKQAKA------LK-VACNLNN  454 (496)
Q Consensus       395 ~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~-----------~~~~-~~-~~~~~~------~~-~~~~~N~  454 (496)
                      +.+.+.+.-.+|-..+..|+|..|.+...++.+..+...           ...+ +. ...+..      .. ..+..-+
T Consensus        80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~  159 (409)
T TIGR00540        80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIAR  159 (409)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHH
Confidence            455677777888888999999999999988887643210           0000 00 001111      11 1234445


Q ss_pred             HHHHHhccCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003          455 AACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       455 a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~  494 (496)
                      |..++..++|+.|+..+++.++..|+|..+++..+.++..
T Consensus       160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~  199 (409)
T TIGR00540       160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIR  199 (409)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            8888899999999999999999999999998888877654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=90.09  E-value=1.2  Score=39.81  Aligned_cols=65  Identities=20%  Similarity=0.258  Sum_probs=54.0

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      ...-||.+...|+|.+|...|.+++.-+-.              -...+++.+|.+++..+++..|....++..+.+|.
T Consensus        92 r~rLa~al~elGr~~EA~~hy~qalsG~fA--------------~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa  156 (251)
T COG4700          92 RYRLANALAELGRYHEAVPHYQQALSGIFA--------------HDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA  156 (251)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhccccC--------------CCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence            345788999999999999999999975321              11677888999999999999999999999998874

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=90.07  E-value=0.22  Score=48.13  Aligned_cols=74  Identities=12%  Similarity=0.121  Sum_probs=61.3

Q ss_pred             HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcc
Q 011003          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGS  483 (496)
Q Consensus       404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~K  483 (496)
                      ..|--++-.++|.-++..|.+|+.....            ....+.+|.|++.+..-.|++.-|..++.-||..|++|..
T Consensus       363 NigLCC~yaqQ~D~~L~sf~RAlstat~------------~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e  430 (478)
T KOG1129|consen  363 NIGLCCLYAQQIDLVLPSFQRALSTATQ------------PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE  430 (478)
T ss_pred             hHHHHHHhhcchhhhHHHHHHHHhhccC------------cchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence            4455567889999999999999998653            2344778999999999999999999999999999999988


Q ss_pred             hhcccc
Q 011003          484 GIHSDG  489 (496)
Q Consensus       484 a~~rrg  489 (496)
                      ||.+.|
T Consensus       431 alnNLa  436 (478)
T KOG1129|consen  431 ALNNLA  436 (478)
T ss_pred             HHHhHH
Confidence            887665

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=89.83  E-value=0.76  Score=38.38  Aligned_cols=76  Identities=17%  Similarity=0.071  Sum_probs=58.3

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp  479 (496)
                      ..+...|..+...|++++|+...++++.-.+.            .+....+...+|.|...+|++++|+..+-.+|.-..
T Consensus        39 ~a~i~lastlr~LG~~deA~~~L~~~~~~~p~------------~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~~~  106 (120)
T PF12688_consen   39 RALIQLASTLRNLGRYDEALALLEEALEEFPD------------DELNAALRVFLALALYNLGRPKEALEWLLEALAETL  106 (120)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------------ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            34556788888999999999999999876543            123456667789999999999999999998885332


Q ss_pred             CCcchhcccccc
Q 011003          480 QKGSGIHSDGRF  491 (496)
Q Consensus       480 ~~~Ka~~rrg~a  491 (496)
                      .    -|+|+..
T Consensus       107 ~----~y~ra~~  114 (120)
T PF12688_consen  107 P----RYRRAIR  114 (120)
T ss_pred             H----HHHHHHH
Confidence            2    6776644

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.73  E-value=1.7  Score=32.93  Aligned_cols=62  Identities=19%  Similarity=0.186  Sum_probs=40.7

Q ss_pred             HHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCC-CCChHHHHHHHHHHHHhhhHHHHH
Q 011003          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-SFGDEEKKQAKALKVACNLNNAAC  457 (496)
Q Consensus       396 ~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~N~a~~  457 (496)
                      ++.+..+-.+|...=..|+|++|+.+|.+|+..|.... ...++.....-..++.=|.+||..
T Consensus         3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~RaE~   65 (75)
T cd02678           3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYLDRAEK   65 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHH
Confidence            45677778888889999999999999999999875432 112222333333344445555543

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>PRK11906 transcriptional regulator; Provisional

Probab=89.67  E-value=0.32  Score=49.58  Aligned_cols=67  Identities=18%  Similarity=0.224  Sum_probs=49.9

Q ss_pred             cHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhc---------cCHHHHHHHHHHHhcccCCCcch
Q 011003          414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL---------KDYKQAEKLCTKKCESSVQKGSG  484 (496)
Q Consensus       414 ~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl---------~~~~~Ai~~~~~al~~dp~~~Ka  484 (496)
                      ..+.|+..+.+|+..            .++++....+|.=+|.||+.+         .+-.+|+..+++|+++||+|+.|
T Consensus       273 ~~~~Al~lf~ra~~~------------~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a  340 (458)
T PRK11906        273 SIYRAMTIFDRLQNK------------SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKI  340 (458)
T ss_pred             HHHHHHHHHHHHhhc------------ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHH
Confidence            345666777777732            122666688888888888865         23567889999999999999999


Q ss_pred             hccccccc
Q 011003          485 IHSDGRFR  492 (496)
Q Consensus       485 ~~rrg~a~  492 (496)
                      ++..|.++
T Consensus       341 ~~~~g~~~  348 (458)
T PRK11906        341 LAIMGLIT  348 (458)
T ss_pred             HHHHHHHH
Confidence            99998754

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=89.61  E-value=0.64  Score=43.65  Aligned_cols=68  Identities=19%  Similarity=0.189  Sum_probs=54.0

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .+-..|-.+-+.|++..|...|.+|+++....               ..+.+|++..|+-.|++..|......+-..-+.
T Consensus       136 ~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~---------------p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a  200 (257)
T COG5010         136 AWNLLGAALDQLGRFDEARRAYRQALELAPNE---------------PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA  200 (257)
T ss_pred             hhhHHHHHHHHccChhHHHHHHHHHHHhccCC---------------chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC
Confidence            44568888999999999999999999995443               677888888888888888888888877655554


Q ss_pred             Ccc
Q 011003          481 KGS  483 (496)
Q Consensus       481 ~~K  483 (496)
                      +..
T Consensus       201 d~~  203 (257)
T COG5010         201 DSR  203 (257)
T ss_pred             chH
Confidence            443

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.35  E-value=1.3  Score=41.08  Aligned_cols=89  Identities=18%  Similarity=0.317  Sum_probs=60.7

Q ss_pred             HHHHhhhHHhhhhhHhc--ccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHH
Q 011003          396 IEAAGKKKEQGNTLFKA--GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (496)
Q Consensus       396 ~~~a~~~k~~Gn~~fk~--~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~  473 (496)
                      +..+.+++.+--+.|..  .++++||.+|++|-+++...         +....-..|++--|.-...+++|.+||.-+++
T Consensus       109 f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e---------es~ssANKC~lKvA~yaa~leqY~~Ai~iyeq  179 (288)
T KOG1586|consen  109 FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE---------ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQ  179 (288)
T ss_pred             HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch---------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444445543  58999999999999997542         22445566777777777789999999999999


Q ss_pred             HhcccCCC------cchhccc-ccccc
Q 011003          474 KCESSVQK------GSGIHSD-GRFRF  493 (496)
Q Consensus       474 al~~dp~~------~Ka~~rr-g~a~~  493 (496)
                      +....-+|      +|.||-+ |.||+
T Consensus       180 va~~s~~n~LLKys~KdyflkAgLChl  206 (288)
T KOG1586|consen  180 VARSSLDNNLLKYSAKDYFLKAGLCHL  206 (288)
T ss_pred             HHHHhccchHHHhHHHHHHHHHHHHhH
Confidence            87654444      5777655 45554

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.30  E-value=1.7  Score=32.78  Aligned_cols=61  Identities=20%  Similarity=0.210  Sum_probs=39.5

Q ss_pred             HHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCC-CChHHHHHHHHHHHHhhhHHHH
Q 011003          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-FGDEEKKQAKALKVACNLNNAA  456 (496)
Q Consensus       396 ~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~N~a~  456 (496)
                      ++.+..+-.+|...=+.|+|++|+..|..|+..|..... ..++.....-..++.-|.+||.
T Consensus         3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl~RaE   64 (75)
T cd02656           3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEYLDRAE   64 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence            345566667788888889999999999999998754322 2223333333444445555554

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=89.28  E-value=0.44  Score=48.89  Aligned_cols=41  Identities=10%  Similarity=-0.001  Sum_probs=35.3

Q ss_pred             HHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003          454 NAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       454 ~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~  494 (496)
                      .+..++..+++..|+..++++++.+|+|+.++...+.+|..
T Consensus       159 ~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~  199 (398)
T PRK10747        159 RVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR  199 (398)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            47788999999999999999999999999888877776653

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=88.63  E-value=0.99  Score=38.69  Aligned_cols=69  Identities=10%  Similarity=0.104  Sum_probs=55.5

Q ss_pred             HHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccC---------------HHHH
Q 011003          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD---------------YKQA  467 (496)
Q Consensus       403 k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~---------------~~~A  467 (496)
                      ...|-.+|++++|..|+..|.+-|++-+.....            .-++.-+++|++++..               ...|
T Consensus        51 L~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v------------dYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A  118 (142)
T PF13512_consen   51 LDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV------------DYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQA  118 (142)
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc------------cHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHH
Confidence            456778999999999999999999986554322            3445567888888776               8999


Q ss_pred             HHHHHHHhcccCCCcc
Q 011003          468 EKLCTKKCESSVQKGS  483 (496)
Q Consensus       468 i~~~~~al~~dp~~~K  483 (496)
                      +.++.++++.-|++.-
T Consensus       119 ~~~f~~lv~~yP~S~y  134 (142)
T PF13512_consen  119 FRDFEQLVRRYPNSEY  134 (142)
T ss_pred             HHHHHHHHHHCcCChh
Confidence            9999999999998753

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=88.62  E-value=0.73  Score=46.00  Aligned_cols=95  Identities=14%  Similarity=0.089  Sum_probs=55.2

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCC---------------CCChHHHHH---------H------HHHHH
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT---------------SFGDEEKKQ---------A------KALKV  448 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~---------------~~~~~~~~~---------~------~~~~~  448 (496)
                      ..++-.+|..++|.|++...+..|+.|+..=..+.               -+.+ -.+.         +      ..-.+
T Consensus        17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~D-Y~kAl~yH~hDltlar~lgdklGEA   95 (639)
T KOG1130|consen   17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKD-YEKALKYHTHDLTLARLLGDKLGEA   95 (639)
T ss_pred             HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhh-HHHHHhhhhhhHHHHHHhcchhccc
Confidence            45666789999999999999999999987521110               0000 0000         0      01113


Q ss_pred             HhhhHHHHHHHhccCHHHHHHHHHHHhcccC------CCcchhccccccccc
Q 011003          449 ACNLNNAACKLKLKDYKQAEKLCTKKCESSV------QKGSGIHSDGRFRFG  494 (496)
Q Consensus       449 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp------~~~Ka~~rrg~a~~~  494 (496)
                      +..-|++..+--+|.|.+|+.+|.+-|.+-.      ....|||..|.+|..
T Consensus        96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYha  147 (639)
T KOG1130|consen   96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHA  147 (639)
T ss_pred             cccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhh
Confidence            3344666666666677777777776655421      234677777666543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=88.41  E-value=0.94  Score=30.11  Aligned_cols=31  Identities=13%  Similarity=0.058  Sum_probs=26.0

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhhhccC
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYD  432 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~  432 (496)
                      +...|..+...|++++|++.|+++++..+.+
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~   34 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALDPDD   34 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            3456788899999999999999999985543

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=88.41  E-value=1.6  Score=37.52  Aligned_cols=74  Identities=12%  Similarity=0.135  Sum_probs=55.7

Q ss_pred             ccccChHHHH--HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCH
Q 011003          387 SWDMNTEEKI--EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY  464 (496)
Q Consensus       387 ~~~~~~~e~~--~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~  464 (496)
                      .|.....+.+  .....+...+..+...|+|..|+..+.+++..               ++..-.+|..+-.||..+|++
T Consensus        48 ~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~---------------dP~~E~~~~~lm~~~~~~g~~  112 (146)
T PF03704_consen   48 EWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL---------------DPYDEEAYRLLMRALAAQGRR  112 (146)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---------------STT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---------------CCCCHHHHHHHHHHHHHCcCH
Confidence            4544444443  34566677777888999999999999999998               555577888899999999999


Q ss_pred             HHHHHHHHHHh
Q 011003          465 KQAEKLCTKKC  475 (496)
Q Consensus       465 ~~Ai~~~~~al  475 (496)
                      .+|+..+.++-
T Consensus       113 ~~A~~~Y~~~~  123 (146)
T PF03704_consen  113 AEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999888763

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=88.03  E-value=0.3  Score=51.27  Aligned_cols=68  Identities=13%  Similarity=0.080  Sum_probs=45.7

Q ss_pred             hHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccc
Q 011003          409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSD  488 (496)
Q Consensus       409 ~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rr  488 (496)
                      .-..++|.+|+.+|+.|+++               .+....++.-+|.-+.+|++|+-..+.=.+-|+++|.+---|+--
T Consensus        85 ~R~dK~Y~eaiKcy~nAl~~---------------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~  149 (700)
T KOG1156|consen   85 QRSDKKYDEAIKCYRNALKI---------------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGF  149 (700)
T ss_pred             HhhhhhHHHHHHHHHHHHhc---------------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHH
Confidence            33567888888888888887               344466666677777777777777776666777776665555544


Q ss_pred             ccc
Q 011003          489 GRF  491 (496)
Q Consensus       489 g~a  491 (496)
                      |.+
T Consensus       150 Avs  152 (700)
T KOG1156|consen  150 AVA  152 (700)
T ss_pred             HHH
Confidence            433

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=87.44  E-value=1.2  Score=43.13  Aligned_cols=50  Identities=16%  Similarity=0.040  Sum_probs=42.4

Q ss_pred             HHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003          445 ALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       445 ~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~  494 (496)
                      -..+.+|+-+|+.++-..+++.|+....+|++-||+++.|=.-.|+.+++
T Consensus       177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~  226 (389)
T COG2956         177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELA  226 (389)
T ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh
Confidence            34577889999999999999999999999999999999887777766554

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=87.36  E-value=3.7  Score=31.03  Aligned_cols=36  Identities=25%  Similarity=0.341  Sum_probs=30.2

Q ss_pred             HHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhcc
Q 011003          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (496)
Q Consensus       396 ~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~  431 (496)
                      +..|..+..+|...=+.|+|++|+.+|.+|++.|..
T Consensus         5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~   40 (77)
T smart00745        5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLE   40 (77)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            455666777888888899999999999999998754

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=87.31  E-value=2.7  Score=44.63  Aligned_cols=45  Identities=11%  Similarity=-0.172  Sum_probs=38.1

Q ss_pred             HhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003          449 ACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       449 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~  494 (496)
                      .+|.=+|..++..++|.+|...+++|++++|+ .-+|+.+|+++..
T Consensus       421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~  465 (517)
T PRK10153        421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYEL  465 (517)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHH
Confidence            44666788888899999999999999999994 6799999887654

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.02  E-value=3.4  Score=31.22  Aligned_cols=35  Identities=23%  Similarity=0.062  Sum_probs=29.0

Q ss_pred             HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhcc
Q 011003          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (496)
Q Consensus       397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~  431 (496)
                      +.+..+-.+|+..=..|+|++|++.|..|++++..
T Consensus         4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~   38 (75)
T cd02680           4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN   38 (75)
T ss_pred             HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence            34556667777778899999999999999999765

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=86.89  E-value=0.87  Score=46.48  Aligned_cols=48  Identities=8%  Similarity=-0.206  Sum_probs=41.2

Q ss_pred             HHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003          448 VACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       448 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      ..++.=++..+++.++.++|++.+.+++.++|+..-..+..|++|+..
T Consensus       340 ~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~  387 (484)
T COG4783         340 PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKG  387 (484)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc
Confidence            556666888999999999999999999999999877777788887654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=86.79  E-value=1.4  Score=40.55  Aligned_cols=84  Identities=12%  Similarity=0.019  Sum_probs=61.1

Q ss_pred             cccHHHHHHHHHHHhhhhccCCCCCh--HHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCc---chhc
Q 011003          412 AGKYARASKRYEKAVKYIEYDTSFGD--EEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKG---SGIH  486 (496)
Q Consensus       412 ~~~y~~A~~~Y~~al~~~~~~~~~~~--~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~---Ka~~  486 (496)
                      .+...+|+..|+..++.++.+.-..+  .....+......--...|.-|++.+.|..|+..|+.+|+.-|+..   .|++
T Consensus       103 ~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~  182 (203)
T PF13525_consen  103 QTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALA  182 (203)
T ss_dssp             -HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHH
Confidence            34566888888888887766533322  223455666666778899999999999999999999999988763   5788


Q ss_pred             ccccccccc
Q 011003          487 SDGRFRFGR  495 (496)
Q Consensus       487 rrg~a~~~l  495 (496)
                      +.+.++..|
T Consensus       183 ~l~~~y~~l  191 (203)
T PF13525_consen  183 RLAEAYYKL  191 (203)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            887777654

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.46  E-value=0.51  Score=46.14  Aligned_cols=56  Identities=23%  Similarity=0.352  Sum_probs=45.5

Q ss_pred             hhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHh
Q 011003          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKC  475 (496)
Q Consensus       405 ~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  475 (496)
                      .|--.|..|+|++|+..|+-+..-               +.-...+..|+|-|++-+|.|.+|.....+|-
T Consensus        63 ia~C~fhLgdY~~Al~~Y~~~~~~---------------~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~  118 (557)
T KOG3785|consen   63 IAHCYFHLGDYEEALNVYTFLMNK---------------DDAPAELGVNLACCKFYLGQYIEAKSIAEKAP  118 (557)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhcc---------------CCCCcccchhHHHHHHHHHHHHHHHHHHhhCC
Confidence            355678999999999999988773               11226788999999999999999998877764

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=86.40  E-value=1.2  Score=27.42  Aligned_cols=29  Identities=24%  Similarity=0.339  Sum_probs=25.4

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhh
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKY  428 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~  428 (496)
                      +.+-..|..+.+.|++.+|+..|++++++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            34556788899999999999999999997

...

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=86.19  E-value=2.9  Score=39.71  Aligned_cols=64  Identities=19%  Similarity=0.175  Sum_probs=52.9

Q ss_pred             HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE  476 (496)
Q Consensus       404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  476 (496)
                      +.|..+|+.|+|.+|+..|+.+...+...         .-..+...++.++..|+.++++.+..+..|-+.+.
T Consensus       183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~e---------gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLls  246 (247)
T PF11817_consen  183 EMAEEYFRLGDYDKALKLLEPAASSYRRE---------GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELLS  246 (247)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhC---------CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            78999999999999999999997664321         01456788889999999999999999999887653

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=85.98  E-value=3.6  Score=42.04  Aligned_cols=88  Identities=19%  Similarity=0.321  Sum_probs=53.0

Q ss_pred             HHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccC-------------------------------CCCCh---HHH
Q 011003          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-------------------------------TSFGD---EEK  440 (496)
Q Consensus       395 ~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~-------------------------------~~~~~---~~~  440 (496)
                      .+.........|-++|+.|+|.+|+..|...|..+.-.                               ....+   ++.
T Consensus       200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~  279 (422)
T PF06957_consen  200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQ  279 (422)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence            44445555667999999999999999999999865211                               11110   000


Q ss_pred             H------------HHHHHHHHhhhHHHHH-HHhccCHHHHHHHHHHHhcccCCCc
Q 011003          441 K------------QAKALKVACNLNNAAC-KLKLKDYKQAEKLCTKKCESSVQKG  482 (496)
Q Consensus       441 ~------------~~~~~~~~~~~N~a~~-~~kl~~~~~Ai~~~~~al~~dp~~~  482 (496)
                      +            .+.+....+-++.|+. .+|++||.-|-..|.+.|++.|+..
T Consensus       280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~  334 (422)
T PF06957_consen  280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE  334 (422)
T ss_dssp             HHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence            0            1122223333344443 3589999999999999999998764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=85.98  E-value=0.56  Score=47.81  Aligned_cols=94  Identities=11%  Similarity=-0.041  Sum_probs=70.6

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhh-hhccC-CCCChHHH-HHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVK-YIEYD-TSFGDEEK-KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE  476 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~-~~~~~-~~~~~~~~-~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  476 (496)
                      .-....|..+|+-+.|..++..|.+||+ .+..- ..+..... .-.......+++|.+..|+..|+...|.+++.++..
T Consensus       284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~  363 (696)
T KOG2471|consen  284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH  363 (696)
T ss_pred             eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence            3445678888999999999999999996 33211 11111110 111223467789999999999999999999999999


Q ss_pred             ccCCCcchhcccccccc
Q 011003          477 SSVQKGSGIHSDGRFRF  493 (496)
Q Consensus       477 ~dp~~~Ka~~rrg~a~~  493 (496)
                      .--.|+.-|.|.|.|++
T Consensus       364 vfh~nPrlWLRlAEcCi  380 (696)
T KOG2471|consen  364 VFHRNPRLWLRLAECCI  380 (696)
T ss_pred             HHhcCcHHHHHHHHHHH
Confidence            98899999999998764

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.61  E-value=1.2  Score=28.70  Aligned_cols=29  Identities=17%  Similarity=0.029  Sum_probs=26.0

Q ss_pred             hhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          450 CNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       450 ~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +|.-++-+.+..++|.+|+.|+.+||++.
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            57778888999999999999999999875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PRK10941 hypothetical protein; Provisional

Probab=85.10  E-value=1  Score=43.27  Aligned_cols=52  Identities=10%  Similarity=-0.095  Sum_probs=43.0

Q ss_pred             HHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003          444 KALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       444 ~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      ..+....+.|+=.+|++.++|..|+.+++..|.++|+++--+--||-+|..|
T Consensus       177 ~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL  228 (269)
T PRK10941        177 IEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQL  228 (269)
T ss_pred             HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            4466778889999999999999999999999999999887666677666554

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=84.78  E-value=2.2  Score=40.89  Aligned_cols=51  Identities=12%  Similarity=0.092  Sum_probs=44.2

Q ss_pred             CCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcch
Q 011003          434 SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSG  484 (496)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka  484 (496)
                      .+.+++.+.+..+..+++.--|..|++.+.+++|+..|.++|.+||-+...
T Consensus       265 ~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~  315 (361)
T COG3947         265 PWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQD  315 (361)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHH
Confidence            345567788888999999999999999999999999999999999976543

>PRK10941 hypothetical protein; Provisional

Probab=84.23  E-value=3.2  Score=39.98  Aligned_cols=68  Identities=10%  Similarity=-0.082  Sum_probs=57.0

Q ss_pred             hhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchh
Q 011003          406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGI  485 (496)
Q Consensus       406 Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~  485 (496)
                      -+.+.+.++|..|+++-...+.+.+.+               ..-+.-|+.+|.+++.+..|+.|.+.-|+..|+.+.|-
T Consensus       188 K~~~~~~~~~~~AL~~~e~ll~l~P~d---------------p~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~  252 (269)
T PRK10941        188 KAALMEEKQMELALRASEALLQFDPED---------------PYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE  252 (269)
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence            345678999999999999999986554               44455699999999999999999999999999987765


Q ss_pred             ccc
Q 011003          486 HSD  488 (496)
Q Consensus       486 ~rr  488 (496)
                      .-|
T Consensus       253 ~ik  255 (269)
T PRK10941        253 MIR  255 (269)
T ss_pred             HHH
Confidence            544

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.55  E-value=2.2  Score=40.13  Aligned_cols=92  Identities=15%  Similarity=0.011  Sum_probs=64.0

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhhhccC-------------CCCChHHHHHHHH------HHHHhhhHHHHHHHhcc
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYD-------------TSFGDEEKKQAKA------LKVACNLNNAACKLKLK  462 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~-------------~~~~~~~~~~~~~------~~~~~~~N~a~~~~kl~  462 (496)
                      .+-+|-.+-..|+|++|++.|...++--+.+             ...+.+-.++++.      ....+|.-+|..|+.++
T Consensus        89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~  168 (289)
T KOG3060|consen   89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEG  168 (289)
T ss_pred             HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh
Confidence            3446666777899999999998877532111             0111111222222      22667889999999999


Q ss_pred             CHHHHHHHHHHHhcccCCCcchhcccccccc
Q 011003          463 DYKQAEKLCTKKCESSVQKGSGIHSDGRFRF  493 (496)
Q Consensus       463 ~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~  493 (496)
                      +|.+|..++++++-++|.|+--+-|.|..++
T Consensus       169 ~f~kA~fClEE~ll~~P~n~l~f~rlae~~Y  199 (289)
T KOG3060|consen  169 DFEKAAFCLEELLLIQPFNPLYFQRLAEVLY  199 (289)
T ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            9999999999999999999876666665543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.49  E-value=1.4  Score=41.46  Aligned_cols=48  Identities=13%  Similarity=0.140  Sum_probs=42.6

Q ss_pred             HHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003          447 KVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       447 ~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~  494 (496)
                      ...++.|.|..|+-.++|.+|...++++++.||.++-|...||.|++-
T Consensus       251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY  298 (366)
T KOG2796|consen  251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY  298 (366)
T ss_pred             hHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence            366788999999999999999999999999999999888888877654

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=82.39  E-value=2.7  Score=41.85  Aligned_cols=92  Identities=17%  Similarity=0.091  Sum_probs=61.7

Q ss_pred             HHhhhhhHhcccHHHHHHHHHHHhh-hhccCCCCC------------------hHHHHHHHHHHHHhhhHHHHHHHhc--
Q 011003          403 KEQGNTLFKAGKYARASKRYEKAVK-YIEYDTSFG------------------DEEKKQAKALKVACNLNNAACKLKL--  461 (496)
Q Consensus       403 k~~Gn~~fk~~~y~~A~~~Y~~al~-~~~~~~~~~------------------~~~~~~~~~~~~~~~~N~a~~~~kl--  461 (496)
                      -+.++-++.+|+-.+|+......++ .+.......                  .............+++-+|.-...+  
T Consensus       188 ~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~  267 (352)
T PF02259_consen  188 LEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYS  267 (352)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhcc
Confidence            3456666777777888888877777 332210000                  0012223445566666666666666  


Q ss_pred             ----cCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003          462 ----KDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       462 ----~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~  494 (496)
                          +.+.+++..+.+|++++|++.|+|++.|..+..
T Consensus       268 ~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~  304 (352)
T PF02259_consen  268 KLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDK  304 (352)
T ss_pred             ccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence                788999999999999999999999998876543

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.35  E-value=0.96  Score=43.33  Aligned_cols=69  Identities=12%  Similarity=0.057  Sum_probs=47.6

Q ss_pred             hHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccc
Q 011003          409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSD  488 (496)
Q Consensus       409 ~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rr  488 (496)
                      +.+..+|..||++...-.+-               .+.....++-++.||+..++|..|-.++++...+-|...+--+--
T Consensus        20 lI~d~ry~DaI~~l~s~~Er---------------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~   84 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELER---------------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ   84 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhc---------------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence            34566666666655443332               233355677799999999999999999999999999876543333


Q ss_pred             cccc
Q 011003          489 GRFR  492 (496)
Q Consensus       489 g~a~  492 (496)
                      |+.+
T Consensus        85 AQSL   88 (459)
T KOG4340|consen   85 AQSL   88 (459)
T ss_pred             HHHH
Confidence            4433

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=82.30  E-value=2.2  Score=27.39  Aligned_cols=32  Identities=25%  Similarity=0.304  Sum_probs=26.3

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIE  430 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~  430 (496)
                      +..+-..|+.++..|+|.+|...|.+++.+..
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~   33 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRE   33 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence            44566789999999999999999999999854

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=82.09  E-value=2  Score=41.38  Aligned_cols=37  Identities=19%  Similarity=0.181  Sum_probs=31.0

Q ss_pred             HHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhcc
Q 011003          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (496)
Q Consensus       395 ~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~  431 (496)
                      -++.+..+-.++...=+.++|.+|+..|..|++|+..
T Consensus         6 ~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~~   42 (439)
T KOG0739|consen    6 FLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFLH   42 (439)
T ss_pred             HHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHHH
Confidence            4666777777788888899999999999999999754

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.98  E-value=11  Score=28.87  Aligned_cols=67  Identities=16%  Similarity=0.117  Sum_probs=48.9

Q ss_pred             HHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCC------CCChHHHHHHHHHHHHhhhHHHHHHHhcc
Q 011003          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT------SFGDEEKKQAKALKVACNLNNAACKLKLK  462 (496)
Q Consensus       396 ~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~------~~~~~~~~~~~~~~~~~~~N~a~~~~kl~  462 (496)
                      .+.|-..-++|-.+=..|+.++|+..|+++++.+..-.      ....+++..+..+..+...|+..+-.++.
T Consensus         5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL~   77 (79)
T cd02679           5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRLQ   77 (79)
T ss_pred             HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34555666677777777999999999999999885421      23446778888888888888877765543

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>PRK11906 transcriptional regulator; Provisional

Probab=81.62  E-value=2.8  Score=42.95  Aligned_cols=33  Identities=9%  Similarity=0.022  Sum_probs=16.7

Q ss_pred             HHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          448 VACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       448 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      +..+.-+|..+.-.|+..+|++..++||+++|.
T Consensus       372 A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~  404 (458)
T PRK11906        372 ASLYYYRALVHFHNEKIEEARICIDKSLQLEPR  404 (458)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence            444444444444555555555555555555553

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=81.39  E-value=1.2  Score=49.38  Aligned_cols=70  Identities=16%  Similarity=0.107  Sum_probs=61.8

Q ss_pred             hhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcch
Q 011003          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSG  484 (496)
Q Consensus       405 ~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka  484 (496)
                      +|--+.+.+++..|+..++.|++.               .+....++.-++.+|...|.|..|++.+++|..++|.+.-+
T Consensus       568 rG~yyLea~n~h~aV~~fQsALR~---------------dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~  632 (1238)
T KOG1127|consen  568 RGPYYLEAHNLHGAVCEFQSALRT---------------DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG  632 (1238)
T ss_pred             ccccccCccchhhHHHHHHHHhcC---------------CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence            566667889999999999999998               55668899999999999999999999999999999998777


Q ss_pred             hcccc
Q 011003          485 IHSDG  489 (496)
Q Consensus       485 ~~rrg  489 (496)
                      -|..|
T Consensus       633 ~fk~A  637 (1238)
T KOG1127|consen  633 RFKEA  637 (1238)
T ss_pred             HHHHH
Confidence            76655

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=81.32  E-value=5.1  Score=33.77  Aligned_cols=73  Identities=12%  Similarity=0.037  Sum_probs=58.3

Q ss_pred             HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE  476 (496)
Q Consensus       397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  476 (496)
                      +.++.+..++..+--+|+-++|+.-.++|+++....           .......|..|+..|.++++-..|..++..|-+
T Consensus        75 ~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-----------trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~  143 (175)
T KOG4555|consen   75 ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-----------TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQ  143 (175)
T ss_pred             cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-----------chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHH
Confidence            445566677777778899999999999999985432           334567789999999999999999999999877


Q ss_pred             ccCC
Q 011003          477 SSVQ  480 (496)
Q Consensus       477 ~dp~  480 (496)
                      +-..
T Consensus       144 LGS~  147 (175)
T KOG4555|consen  144 LGSK  147 (175)
T ss_pred             hCCH
Confidence            6543

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=81.04  E-value=3.4  Score=36.74  Aligned_cols=44  Identities=20%  Similarity=0.167  Sum_probs=30.2

Q ss_pred             HHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccc
Q 011003          448 VACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRF  491 (496)
Q Consensus       448 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a  491 (496)
                      ...+.+++.++...+++..|+..+.+++...|.....++..+..
T Consensus       202 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  245 (291)
T COG0457         202 AEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALL  245 (291)
T ss_pred             hHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHH
Confidence            45567777777777788888888888887777644444444433

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=80.99  E-value=1.5  Score=46.39  Aligned_cols=42  Identities=12%  Similarity=-0.024  Sum_probs=37.5

Q ss_pred             HHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccc
Q 011003          448 VACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDG  489 (496)
Q Consensus       448 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg  489 (496)
                      ..||.=++..+..-++|.+||+++..||.++|+|...|+-.+
T Consensus        75 ~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDls  116 (700)
T KOG1156|consen   75 HVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLS  116 (700)
T ss_pred             chhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            567888999999999999999999999999999988776554

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.98  E-value=2.6  Score=44.16  Aligned_cols=70  Identities=23%  Similarity=0.239  Sum_probs=49.9

Q ss_pred             HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHH-------------------HHHHHHHHHHhhhHHHHHHHhccCH
Q 011003          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEE-------------------KKQAKALKVACNLNNAACKLKLKDY  464 (496)
Q Consensus       404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~N~a~~~~kl~~~  464 (496)
                      -+|..+|+.++|.+|+..|+..++--..+   .+++                   ..+.......++.|+|-.++..++|
T Consensus       115 L~AQvlYrl~~ydealdiY~~L~kn~~dd---~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky  191 (652)
T KOG2376|consen  115 LRAQVLYRLERYDEALDIYQHLAKNNSDD---QDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY  191 (652)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence            47888999999999999998876531110   0010                   0111122456788999999999999


Q ss_pred             HHHHHHHHHHhc
Q 011003          465 KQAEKLCTKKCE  476 (496)
Q Consensus       465 ~~Ai~~~~~al~  476 (496)
                      .+|++-..+|++
T Consensus       192 ~qA~elL~kA~~  203 (652)
T KOG2376|consen  192 NQAIELLEKALR  203 (652)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988844

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=80.37  E-value=2.7  Score=45.35  Aligned_cols=73  Identities=8%  Similarity=-0.020  Sum_probs=58.6

Q ss_pred             hhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcc
Q 011003          408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHS  487 (496)
Q Consensus       408 ~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~r  487 (496)
                      .+.+.++-.+|..+..+|-++               .+.....|.-++.++...+++.+|.+.+..||.+||+++-+.--
T Consensus       659 ~~~~~~~~~~a~~CL~Ea~~~---------------~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~A  723 (799)
T KOG4162|consen  659 LFLLSGNDDEARSCLLEASKI---------------DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTA  723 (799)
T ss_pred             HHHhcCCchHHHHHHHHHHhc---------------chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHH
Confidence            334455556676777777776               56668889999999999999999999999999999999988777


Q ss_pred             cccccccc
Q 011003          488 DGRFRFGR  495 (496)
Q Consensus       488 rg~a~~~l  495 (496)
                      .|++|+.+
T Consensus       724 la~~lle~  731 (799)
T KOG4162|consen  724 LAELLLEL  731 (799)
T ss_pred             HHHHHHHh
Confidence            77776543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=80.34  E-value=5.8  Score=40.61  Aligned_cols=73  Identities=21%  Similarity=0.160  Sum_probs=53.8

Q ss_pred             HHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHH
Q 011003          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKK  474 (496)
Q Consensus       395 ~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  474 (496)
                      +.+.+.+.-.+|-..+..|+|..|.+...++-+..+               .....+...|.+..++|++..|...+.++
T Consensus        80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~---------------~p~l~~llaA~aA~~~g~~~~A~~~l~~A  144 (398)
T PRK10747         80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAE---------------QPVVNYLLAAEAAQQRGDEARANQHLERA  144 (398)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc---------------chHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            455666667778888888999988866666554311               11333555566779999999999999999


Q ss_pred             hcccCCCc
Q 011003          475 CESSVQKG  482 (496)
Q Consensus       475 l~~dp~~~  482 (496)
                      .+.+|++.
T Consensus       145 ~~~~~~~~  152 (398)
T PRK10747        145 AELADNDQ  152 (398)
T ss_pred             HhcCCcch
Confidence            99999885

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	496
3jym_A	377	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		1e-148
3jxv_A	356	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		1e-145
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		4e-37
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		3e-36
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		2e-35
3o5d_A	264	Crystal Structure Of A Fragment Of Fkbp51 Comprisin		4e-34
3o5d_A	264	Crystal Structure Of A Fragment Of Fkbp51 Comprisin		2e-23
3o5d_A	264	Crystal Structure Of A Fragment Of Fkbp51 Comprisin		1e-12
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		1e-33
1q1c_A	280	Crystal Structure Of N(1-260) Of Human Fkbp52 Lengt		6e-33
1q1c_A	280	Crystal Structure Of N(1-260) Of Human Fkbp52 Lengt		1e-26
1q1c_A	280	Crystal Structure Of N(1-260) Of Human Fkbp52 Lengt		8e-13
2lgo_A	130	Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prol		8e-29
2lgo_A	130	Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prol		3e-09
1r9h_A	135	Structural Genomics Of C.Elegans: Fkbp-Type Peptidy		6e-28
1r9h_A	135	Structural Genomics Of C.Elegans: Fkbp-Type Peptidy		2e-12
1rot_A	149	Structure Of Fkbp59-I, The N-Terminal Domain Of A 5		5e-27
1rot_A	149	Structure Of Fkbp59-I, The N-Terminal Domain Of A 5		6e-13
1n1a_A	140	Crystal Structure Of The N-Terminal Domain Of Human		7e-27
1n1a_A	140	Crystal Structure Of The N-Terminal Domain Of Human		3e-13
4drj_A	144	O-crystal Structure Of The Ppiase Domain Of Fkbp52,		7e-27
4drj_A	144	O-crystal Structure Of The Ppiase Domain Of Fkbp52,		2e-13
3o5e_A	144	Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144		8e-26
3o5e_A	144	Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144		1e-12
3o5g_A	128	Fk1 Domain Of Fkbp51, Crystal Form I Length = 128		8e-26
3o5g_A	128	Fk1 Domain Of Fkbp51, Crystal Form I Length = 128		1e-12
4drh_A	144	Co-crystal Structure Of The Ppiase Domain Of Fkbp51		9e-26
4drh_A	144	Co-crystal Structure Of The Ppiase Domain Of Fkbp51		1e-12
3o5l_A	128	Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Le		9e-26
3o5l_A	128	Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Le		1e-12
1fkk_A	107	Atomic Structure Of Fkbp12, An Immunophilin Binding		1e-24
1fkk_A	107	Atomic Structure Of Fkbp12, An Immunophilin Binding		3e-09
3uqi_A	108	Crystallographic Structure Of Fkbp12 From Aedes Aeg		2e-24
3uqi_A	108	Crystallographic Structure Of Fkbp12 From Aedes Aeg		1e-08
4dz3_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		3e-24
4dz3_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		2e-06
3h9r_B	109	Crystal Structure Of The Kinase Domain Of Type I Ac		3e-24
3h9r_B	109	Crystal Structure Of The Kinase Domain Of Type I Ac		8e-09
1fkb_A	107	Atomic Structure Of The Rapamycin Human Immunophili		4e-24
1fkb_A	107	Atomic Structure Of The Rapamycin Human Immunophili		9e-09
2fap_A	107	The Structure Of The Immunophilin-Immunosuppressant		4e-24
2fap_A	107	The Structure Of The Immunophilin-Immunosuppressant		8e-09
3uf8_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		4e-24
3uf8_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		5e-06
3uqa_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		5e-24
3uqa_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-06
1tco_C	107	Ternary Complex Of A Calcineurin A Fragment, Calcin		6e-24
1tco_C	107	Ternary Complex Of A Calcineurin A Fragment, Calcin		1e-08
1yat_A	113	Improved Calcineurin Inhibition By Yeast Fkbp12-Dru		6e-24
1yat_A	113	Improved Calcineurin Inhibition By Yeast Fkbp12-Dru		5e-06
2ppp_A	107	Crystal Structure Of E60q Mutant Of Fkbp12 Length =		6e-24
2ppp_A	107	Crystal Structure Of E60q Mutant Of Fkbp12 Length =		1e-08
3vaw_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		6e-24
3vaw_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		6e-06
4ggq_C	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		6e-24
4ggq_C	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		6e-06
2y78_A	133	Crystal Structure Of Bpss1823, A Mip-Like Chaperone		6e-24
2y78_A	133	Crystal Structure Of Bpss1823, A Mip-Like Chaperone		2e-06
2ke0_A	117	Solution Structure Of Peptidyl-Prolyl Cis-Trans Iso		7e-24
2ke0_A	117	Solution Structure Of Peptidyl-Prolyl Cis-Trans Iso		1e-06
2ppo_A	107	Crystal Structure Of E60a Mutant Of Fkbp12 Length =		8e-24
2ppo_A	107	Crystal Structure Of E60a Mutant Of Fkbp12 Length =		1e-08
1eym_A	107	Fk506 Binding Protein Mutant, Homodimeric Complex L		2e-23
1eym_A	107	Fk506 Binding Protein Mutant, Homodimeric Complex L		3e-08
1bkf_A	107	Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX		2e-23
1bkf_A	107	Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX		1e-08
1bl4_A	107	Fkbp Mutant F36v Complexed With Remodeled Synthetic		2e-23
1bl4_A	107	Fkbp Mutant F36v Complexed With Remodeled Synthetic		4e-08
3uqb_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		4e-23
3uqb_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		4e-06
2dg4_A	107	Fk506-Binding Protein Mutant Wf59 Complexed With Ra		4e-23
2dg4_A	107	Fk506-Binding Protein Mutant Wf59 Complexed With Ra		5e-09
2dg9_A	107	Fk506-Binding Protein Mutant Wl59 Complexed With Ra		7e-23
2dg9_A	107	Fk506-Binding Protein Mutant Wl59 Complexed With Ra		2e-09
2pbc_A	102	Fk506-Binding Protein 2 Length = 102		2e-22
2pbc_A	102	Fk506-Binding Protein 2 Length = 102		5e-05
1c9h_A	107	Crystal Structure Of Fkbp12.6 In Complex With Rapam		3e-22
1c9h_A	107	Crystal Structure Of Fkbp12.6 In Complex With Rapam		3e-08
4dz2_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		6e-21
4dz2_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		1e-04
2ki3_A	126	Structural And Biochemical Characterization Of Fk50		8e-21
2ki3_A	126	Structural And Biochemical Characterization Of Fk50		2e-09
2vn1_A	129	Crystal Structure Of The Fk506-Binding Domain Of Pl		6e-20
2vn1_A	129	Crystal Structure Of The Fk506-Binding Domain Of Pl		5e-10
2ofn_A	135	Solution Structure Of Fk506-Binding Domain (Fkbd)of		6e-20
2ofn_A	135	Solution Structure Of Fk506-Binding Domain (Fkbd)of		5e-10
1pbk_A	116	Homologous Domain Of Human Fkbp25 Length = 116		7e-18
1pbk_A	116	Homologous Domain Of Human Fkbp25 Length = 116		3e-13
1q6h_A	224	Crystal Structure Of A Truncated Form Of Fkpa From		3e-17
1q6u_A	245	Crystal Structure Of Fkpa From Escherichia Coli Len		3e-17
1jvw_A	167	Trypanosoma Cruzi Macrophage Infectivity Potentiato		5e-17
3kz7_A	119	C-Terminal Domain Of Murine Fkbp25 Rapamycin Comple		8e-17
3kz7_A	119	C-Terminal Domain Of Murine Fkbp25 Rapamycin Comple		1e-12
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		3e-15
1u79_A	129	Crystal Structure Of Atfkbp13 Length = 129		1e-13
3b7x_A	134	Crystal Structure Of Human Fk506-Binding Protein 6		1e-11
3b7x_A	134	Crystal Structure Of Human Fk506-Binding Protein 6		3e-06
4dip_A	125	Crystal Structure Of Human Peptidyl-Prolyl Cis-Tran		2e-11
1fd9_A	213	Crystal Structure Of The Macrophage Infectivity Pot		3e-10
2uz5_A	137	Solution Structure Of The Fkbp-Domain Of Legionella		5e-10
3oe2_A	219	1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Tran		3e-07
2f2d_A	121	Solution Structure Of The Fk506-Binding Domain Of H		3e-07
2f2d_A	121	Solution Structure Of The Fk506-Binding Domain Of H		6e-04
2awg_A	118	Structure Of The Ppiase Domain Of The Human Fk506-B		4e-07
2awg_A	118	Structure Of The Ppiase Domain Of The Human Fk506-B		7e-04
2jwx_A	157	Solution Structure Of The N-Terminal Domain Of Huma		3e-06
2jwx_A	157	Solution Structure Of The N-Terminal Domain Of Huma		4e-04
2d9f_A	135	Solution Structure Of Ruh-047, An Fkbp Domain From		3e-06
2d9f_A	135	Solution Structure Of Ruh-047, An Fkbp Domain From		5e-04
2f4e_A	180	N-Terminal Domain Of Fkbp42 From Arabidopsis Thalia		9e-06
2f4e_A	180	N-Terminal Domain Of Fkbp42 From Arabidopsis Thalia		6e-04
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		1e-05
4dt4_A	169	Crystal Structure Of The Ppiase-Chaperone Slpa With		5e-04

>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 377

Iteration: 1
 Score =  521 bits (1343), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 269/363 (74%), Positives = 293/363 (80%), Gaps = 2/363 (0%)
Query: 27  KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
           KVGEE EIG Q            WDTPE GDEVEVHYTGTLLDG +FDSSRDR   FKF 
Sbjct: 17  KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFK 76
Query: 87  LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
           LGQG VIKGWD GIKTMKKGENA+FTIPPELAYGESGSPPTIP NATLQFDVELLSWTSV
Sbjct: 77  LGQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSV 136
Query: 147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
                              WENPKD DEV V YEARLEDG VV K++GVEFTVKDGH CP
Sbjct: 137 RDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCP 196
Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
            LAKAVKTMKKGEKVLLAVKPQYGFGE G+ A+G  GAVPPNA+L I LELVSWKTV+EI
Sbjct: 197 ALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEI 256
Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
            DDKK++KK+LKE +G+ERPNEGAVV VK+ GKLQDGTVF+KKGH E+E  FEFKTDEE 
Sbjct: 257 GDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEP-FEFKTDEEA 315
Query: 327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
           VI+GLDRAV+ MKK EVAL+TI PEYA+GS ES+Q+ A+VPPNSTV YEVELVSF K+KE
Sbjct: 316 VIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQD-AIVPPNSTVIYEVELVSFVKDKE 374
Query: 387 SWD 389
           SWD
Sbjct: 375 SWD 377

>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 356

Iteration: 1
 Score =  511 bits (1315), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 264/358 (73%), Positives = 288/358 (80%), Gaps = 2/358 (0%)
Query: 27  KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
           KVGEE EIG Q            WDTPE GDEVEVHYTGTLLDG +FDSSRDR   FKF 
Sbjct: 1   KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFK 60
Query: 87  LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
           LGQG VIKGWD GIKTMKKGENA+FTIPPELAYGESGSPPTIP NATLQFDVELLSWTSV
Sbjct: 61  LGQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSV 120
Query: 147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
                              WENPKD DEV V YEARLEDG VV K++GVEFTVKDGH CP
Sbjct: 121 RDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCP 180
Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
            LAKAVKTMKKGEKVLLAVKPQYGFGE G+ A+G  GAVPPNA+L I LELVSWKTV+EI
Sbjct: 181 ALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEI 240
Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
            DDKK++KK+LKE +G+ERPNEGAVV VK+ GKLQDGTVF+KKGH E+E  FEFKTDEE 
Sbjct: 241 GDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEP-FEFKTDEEA 299
Query: 327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
           VI+GLDRAV+ MKK EVAL+TI PEYA+GS ES+Q+ A+VPPNSTV YEVELVSF K+
Sbjct: 300 VIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQD-AIVPPNSTVIYEVELVSFVKD 356

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score =  152 bits (384), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 102/312 (32%), Positives = 162/312 (51%), Gaps = 19/312 (6%)
Query: 167 ENPKDLDEVLVNYEARLEDGMVVG----KADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
           E P   D V V+Y  +L +G        + +   F++  G         V TMKKGE   
Sbjct: 45  ETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICH 104
Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDG 282
           L  KP+Y +G     A+G+   +P NATL   +EL+ +K   ++ +D  +I++  + G+G
Sbjct: 105 LLCKPEYAYG-----ATGSLPKIPSNATLFFEVELLDFKG-EDLLEDGGIIRRTKRRGEG 158
Query: 283 FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID-GLDRAVITMKKN 341
           +  PNEGA V++ L G+   G VF  +     +  F     E+  I  G+D+A+  M++ 
Sbjct: 159 YSNPNEGARVQIHLEGRC-GGRVFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQRE 212
Query: 342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXXXX 401
           E  +L + P Y FG  E+ +    + PN+ + YEV L SFEK KESW+M+T         
Sbjct: 213 EQCILHLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAI 270
Query: 402 XXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL 461
              +G   FK GKY +A  +Y K V ++E +    ++E K +++  +A  LN A C LKL
Sbjct: 271 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330
Query: 462 KDYKQAEKLCTK 473
           ++Y +A + C K
Sbjct: 331 REYTKAVECCDK 342

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score =  149 bits (377), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 99/312 (31%), Positives = 165/312 (52%), Gaps = 19/312 (6%)
Query: 167 ENPKDLDEVLVNYEARLEDGMVVG----KADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
           E P   D+V V+Y+ +L +G        + +   F++  G         V TMK+GE   
Sbjct: 45  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICH 104
Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDG 282
           L  KP+Y +G     ++G+   +P NATL   +EL+ +K   ++ +D  +I++  ++G+G
Sbjct: 105 LLCKPEYAYG-----SAGSLPKIPSNATLFFEIELLDFKG-EDLFEDGGIIRRTKRKGEG 158
Query: 283 FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID-GLDRAVITMKKN 341
           +  PNEGA V++ L G+   G +F  +     +  F     E+  I  G+D+A+  M++ 
Sbjct: 159 YSNPNEGATVEIHLEGRC-GGRMFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQRE 212
Query: 342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXXXX 401
           E  +L + P Y FG  E+ +    + PN+ + YEV L SFEK KESW+M+T         
Sbjct: 213 EQCILYLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAI 270
Query: 402 XXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL 461
              +G   FK GKY +A  +Y K V ++E +    ++E K +++  +A  LN A C LKL
Sbjct: 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330
Query: 462 KDYKQAEKLCTK 473
           ++Y +A + C K
Sbjct: 331 REYTKAVECCDK 342

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/229 (35%), Positives = 132/229 (57%), Gaps = 13/229 (5%)
Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
           S + +D  +I++I   G+G+ +PNEGA+V+V L G  +D           +++   F+  
Sbjct: 19  SHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------DQRELRFEIG 70
Query: 324 EEQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
           E + +D   GL+RA+  M+K E +++ + P YAFGS    +E   +PPN+ + YE+ L S
Sbjct: 71  EGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSV--GKEKFQIPPNAELKYELHLKS 128
Query: 381 FEKEKESWDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEK 440
           FEK KESW+MN+            +G   FK GKY +A  +Y+K V ++EY++SF +EE 
Sbjct: 129 FEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA 188
Query: 441 KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDG 489
           ++A+AL++A +LN A C LKL+ +  A + C K  E       G+   G
Sbjct: 189 QKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRG 237

>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264

Iteration: 1
 Score =  142 bits (358), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 88/218 (40%), Positives = 118/218 (54%), Gaps = 10/218 (4%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           +TP  GD+V VHY G L +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE   
Sbjct: 49  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 108
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVXXXXXXXXXXXXXXXXXXXWENPK 170
               PE AYG +GS P IP NATL F++ELL +                      + NP 
Sbjct: 109 LLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKG-EDLFEDGGIIRRTKRKGEGYSNPN 167
Query: 171 DLDEVLVNYEARLEDGMVVGKADGVEFTVKDG--HFCPT-LAKAVKTMKKGEKVLLAVKP 227
           +   V ++ E R    M       V FTV +G  H  P  + KA++ M++ E+ +L + P
Sbjct: 168 EGATVEIHLEGRCGGRMF--DCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGP 225
Query: 228 QYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSE 265
           +YGFGE GK   G    + PNA L   + L S++   E
Sbjct: 226 RYGFGEAGKPKFG----IEPNAELIYEVTLKSFEKAKE 259

>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 123/230 (53%), Gaps = 19/230 (8%)
Query: 167 ENPKDLDEVLVNYEARLEDGMVVG----KADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
           E P   D+V V+Y+ +L +G        + +   F++  G         V TMKKGE   
Sbjct: 49  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 108
Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDG 282
           L  KP+Y +G     ++G+   +P NATL   +EL+ +K   ++ +D  +I++  ++G+G
Sbjct: 109 LLCKPEYAYG-----SAGSLPKIPSNATLFFEIELLDFKG-EDLFEDGGIIRRTKRKGEG 162
Query: 283 FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID-GLDRAVITMKKN 341
           +  PNEGA V++ L G+   G +F  +     +  F     E+  I  G+D+A+  M++ 
Sbjct: 163 YSNPNEGATVEIHLEGRC-GGRMFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQRE 216
Query: 342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMN 391
           E  +L + P Y FG  E+ +    + PN+ + YEV L SFEK KESW+M+
Sbjct: 217 EQCILYLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMD 264

>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K + + G+G E P  G  V V   GKL +G  F    H   E  F F   + QVI
Sbjct: 34  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKF-DSSHDRNEP-FVFSLGKGQVI 91
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D  V TMKK E+  L   PEYA+GSA S   L  +P N+T+ +E+EL+ F+ E
Sbjct: 92  KAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKGE 144

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 130/229 (56%), Gaps = 13/229 (5%)
Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
           S + +D  +I++I   G+G+ +PNEGA+V+V L G  +D           +++   F+  
Sbjct: 19  SHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------DQRELRFEIG 70
Query: 324 EEQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
           E + +D   GL+RA+   +K E +++ + P YAFGS    +E   +PPN+ + YE+ L S
Sbjct: 71  EGENLDLPYGLERAIQRXEKGEHSIVYLKPSYAFGSV--GKEKFQIPPNAELKYELHLKS 128
Query: 381 FEKEKESWDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEK 440
           FEK KESW+ N+            +G   FK GKY +A  +Y+K V ++EY++SF +EE 
Sbjct: 129 FEKAKESWEXNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA 188
Query: 441 KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDG 489
           ++A+AL++A +LN A C LKL+ +  A + C K  E       G+   G
Sbjct: 189 QKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRG 237

>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52 Length = 280

Iteration: 1
 Score =  138 bits (348), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 87/219 (39%), Positives = 112/219 (51%), Gaps = 10/219 (4%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           + P  GD V VHYTG LLDGT+FDSS DR   F F LG+G VIK WDI I TMK GE   
Sbjct: 65  EMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH 124
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVXXXXXXX-XXXXXXXXXXXXWENP 169
            T  PE AYG +GSPP IPPNATL F+VEL  +                       +  P
Sbjct: 125 ITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKP 184
Query: 170 KDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGH---FCPTLAKAVKTMKKGEKVLLAVK 226
            +   V V  E   +D +   +   + F + +G        L +A++ M+KGE  ++ +K
Sbjct: 185 NEGAIVEVALEGYYKDKLFDQRE--LRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLK 242
Query: 227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSE 265
           P Y FG  GK        +PPNA L+  L L S++   E
Sbjct: 243 PSYAFGSVGKEKF----QIPPNAELKYELHLKSFEKAKE 277

>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52 Length = 280

Iteration: 1
 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 124/232 (53%), Gaps = 25/232 (10%)
Query: 167 ENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
           E P   D V V+Y   L DG      + + D   F +  G        A+ TMK GE   
Sbjct: 65  EMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH 124
Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITD--DKKVIKKILKEG 280
           +  KP+Y +G     ++G+   +PPNATL   +EL  +K   ++T+  D  +I++I   G
Sbjct: 125 ITCKPEYAYG-----SAGSPPKIPPNATLVFEVELFEFKG-EDLTEEEDGGIIRRIQTRG 178
Query: 281 DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID---GLDRAVIT 337
           +G+ +PNEGA+V+V L G  +D           +++   F+  E + +D   GL+RA+  
Sbjct: 179 EGYAKPNEGAIVEVALEGYYKDKLF--------DQRELRFEIGEGENLDLPYGLERAIQR 230
Query: 338 MKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWD 389
           M+K E +++ + P YAFGS    +E   +PPN+ + YE+ L SFEK KESW+
Sbjct: 231 MEKGEHSIVYLKPSYAFGSV--GKEKFQIPPNAELKYELHLKSFEKAKESWE 280

>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52 Length = 280

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K I +EG G E P  G  V V   G L DGT F      + +  F F   + +VI
Sbjct: 50  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKF--DSSLDRKDKFSFDLGKGEVI 107
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D A+ TMK  EV  +T  PEYA+GSA S  +   +PPN+T+ +EVEL  F+ E
Sbjct: 108 KAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPK---IPPNATLVFEVELFEFKGE 160

>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase From Giardia Lamblia, Seattle Structural Genomics Center For Infectious Disease Target Gilaa.00840.A Length = 130

Iteration: 1
 Score =  125 bits (313), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 58/90 (64%), Positives = 66/90 (73%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G +V VHY G   DG QFDSSR R  PF+FTLG G VIKGWD G+ TM  GE A+FT
Sbjct: 40  PQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFT 99
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLS 142
           IP +LAYGE G PP IPP ATL F+VELL+
Sbjct: 100 IPYQLAYGERGYPPVIPPKATLVFEVELLA 129

>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase From Giardia Lamblia, Seattle Structural Genomics Center For Infectious Disease Target Gilaa.00840.A Length = 130

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 274 KKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDR 333
           KK+L  GDG  +P  G  V V   G+  DG  F         + F+F     +VI G D+
Sbjct: 28  KKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQF--DSSRSRGKPFQFTLGAGEVIKGWDQ 85
Query: 334 AVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
            V TM   E AL TI  + A+G    +    V+PP +T+ +EVEL++
Sbjct: 86  GVATMTLGEKALFTIPYQLAYG---ERGYPPVIPPKATLVFEVELLA 129

>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl Isomerase Length = 135

Iteration: 1
 Score =  122 bits (305), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 56/93 (60%), Positives = 68/93 (73%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P  G  V+VHY GTL +GT+FDSSRDR   F F LG+GNVIKGWD+G+ TM KGE A FT
Sbjct: 30  PTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFT 89
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLSWTS 145
           I  +  YG++GSPP IP  ATL F+VEL  W++
Sbjct: 90  IRSDYGYGDAGSPPKIPGGATLIFEVELFEWSA 122

>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl Isomerase Length = 135

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D  V+K I KEG G  +P  G  VKV  +G L++GT F      +    F F      VI
Sbjct: 13  DGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKF--DSSRDRGDQFSFNLGRGNVI 70
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESW 388
            G D  V TM K EVA  TI  +Y +G A S  +   +P  +T+ +EVEL  +  E  S 
Sbjct: 71  KGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPK---IPGGATLIFEVELFEWSAEDISP 127
Query: 389 DMN 391
           D +
Sbjct: 128 DRD 130

>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda Fk506-Binding Protein, Nmr, Minimized Average Structure Length = 149

Iteration: 1
 Score =  119 bits (297), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 65/93 (69%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           +TP  GD V VHYTG LLDGT+FDSS DR   F F LG+G VIK WDI + TMK GE   
Sbjct: 44  ETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGELCR 103
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
            T  PE AYG +GSPP IPPNATL F+VEL  +
Sbjct: 104 ITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 136

>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda Fk506-Binding Protein, Nmr, Minimized Average Structure Length = 149

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K I +EG G E P  G  V V   G L DGT F      + +  F F   + +VI
Sbjct: 29  DEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKF--DSSLDRKDKFSFDLGKGEVI 86
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D AV TMK  E+  +T  PEYA+GSA S  +   +PPN+T+ +EVEL  F+ E
Sbjct: 87  KAWDIAVATMKVGELCRITCKPEYAYGSAGSPPK---IPPNATLVFEVELFEFKGE 139

>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52 Length = 140

Iteration: 1
 Score =  118 bits (296), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 64/93 (68%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           + P  GD V VHYTG LLDGT+FDSS DR   F F LG+G VIK WDI I TMK GE   
Sbjct: 45  EMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH 104
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
            T  PE AYG +GSPP IPPNATL F+VEL  +
Sbjct: 105 ITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 137

>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52 Length = 140

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K I +EG G E P  G  V V   G L DGT F      + +  F F   + +VI
Sbjct: 30  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKF--DSSLDRKDKFSFDLGKGEVI 87
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D A+ TMK  EV  +T  PEYA+GSA S  +   +PPN+T+ +EVEL  F+ E
Sbjct: 88  KAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPK---IPPNATLVFEVELFEFKGE 140

>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52, Rapamycin And The Frb Fragment Of Mtor Length = 144

Iteration: 1
 Score =  118 bits (296), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 64/93 (68%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           + P  GD V VHYTG LLDGT+FDSS DR   F F LG+G VIK WDI I TMK GE   
Sbjct: 49  EMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH 108
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
            T  PE AYG +GSPP IPPNATL F+VEL  +
Sbjct: 109 ITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 141

>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52, Rapamycin And The Frb Fragment Of Mtor Length = 144

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K I +EG G E P  G  V V   G L DGT F      + +  F F   + +VI
Sbjct: 34  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKF--DSSLDRKDKFSFDLGKGEVI 91
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D A+ TMK  EV  +T  PEYA+GSA S  +   +PPN+T+ +EVEL  F+ E
Sbjct: 92  KAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPK---IPPNATLVFEVELFEFKGE 144

>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144

Iteration: 1
 Score =  115 bits (287), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 66/93 (70%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           +TP  GD+V VHY G L +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE   
Sbjct: 49  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 108
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
               PE AYG +GS P IP NATL F++ELL +
Sbjct: 109 LLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141

>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K + + G+G E P  G  V V   GKL +G  F    H   E  F F   + QVI
Sbjct: 34  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKF-DSSHDRNEP-FVFSLGKGQVI 91
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D  V TMKK E+  L   PEYA+GSA S   L  +P N+T+ +E+EL+ F+ E
Sbjct: 92  KAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKGE 144

>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score =  114 bits (286), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 66/93 (70%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           +TP  GD+V VHY G L +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE   
Sbjct: 33  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 92
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
               PE AYG +GS P IP NATL F++ELL +
Sbjct: 93  LLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 125

>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K + + G+G E P  G  V V   GKL +G  F    H   E  F F   + QVI
Sbjct: 18  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKF-DSSHDRNEP-FVFSLGKGQVI 75
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D  V TMKK E+  L   PEYA+GSA S   L  +P N+T+ +E+EL+ F+ E
Sbjct: 76  KAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKGE 128

>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51, Rapamycin And The Frb Fragment Of Mtor At Low Ph Length = 144

Iteration: 1
 Score =  114 bits (286), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 66/93 (70%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           +TP  GD+V VHY G L +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE   
Sbjct: 49  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 108
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
               PE AYG +GS P IP NATL F++ELL +
Sbjct: 109 LLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141

>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51, Rapamycin And The Frb Fragment Of Mtor At Low Ph Length = 144

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K + + G+G E P  G  V V   GKL +G  F    H   E  F F   + QVI
Sbjct: 34  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKF-DSSHDRNEP-FVFSLGKGQVI 91
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D  V TMKK E+  L   PEYA+GSA S   L  +P N+T+ +E+EL+ F+ E
Sbjct: 92  KAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKGE 144

>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score =  114 bits (286), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 66/93 (70%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           +TP  GD+V VHY G L +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE   
Sbjct: 33  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 92
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
               PE AYG +GS P IP NATL F++ELL +
Sbjct: 93  LLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 125

>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K + + G+G E P  G  V V   GKL +G  F    H   E  F F   + QVI
Sbjct: 18  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKF-DSSHDRNEP-FVFSLGKGQVI 75
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D  V TMKK E+  L   PEYA+GSA S   L  +P N+T+ +E+EL+ F+ E
Sbjct: 76  KAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKGE 128

>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding Protein Length = 107

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPPNATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPNATLIFDVELL 104

>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding Protein Length = 107

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G +  V 
Sbjct: 7   ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFVLGKQEVIRGWEEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LTI+P+YA+G+        ++PPN+T+ ++VEL+  E
Sbjct: 65  QMSVGQRAKLTISPDYAYGATGHP---GIIPPNATLIFDVELLKLE 107

>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti Length = 108

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/89 (57%), Positives = 59/89 (66%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTGTL DG  FDSSR R  PF+FT+G+G VI+GWD G+  M  G+ A   
Sbjct: 17  PKAGQVAVVHYTGTLADGKVFDSSRTRGKPFRFTVGRGEVIRGWDEGVAQMSVGQRAKLV 76
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
             P+ AYG  G P  IPPNATL FDVELL
Sbjct: 77  CSPDYAYGSRGHPGVIPPNATLTFDVELL 105

>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti Length = 108

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/106 (34%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L  GD    P  G V  V   G L DG VF         + F F     +VI G D  V 
Sbjct: 8   LAAGDEATYPKAGQVAVVHYTGTLADGKVF--DSSRTRGKPFRFTVGRGEVIRGWDEGVA 65
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A L  +P+YA+G   S+    V+PPN+T+ ++VEL+  E
Sbjct: 66  QMSVGQRAKLVCSPDYAYG---SRGHPGVIPPNATLTFDVELLRVE 108

>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation M61h From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 61/86 (70%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G+VIKGWD G++ MK G     TIPP
Sbjct: 26  GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGHVIKGWDEGVQGMKVGGVRRLTIPP 85
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 86  QLGYGARGAGGVIPPNATLVFEVELL 111

>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation M61h From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L EG G E    G  V V   G L DG  F      +    F F      VI G D  V 
Sbjct: 15  LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGHVIKGWDEGVQ 71
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
            MK   V  LTI P+  +G+  +     V+PPN+T+ +EVEL+
Sbjct: 72  GMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 111

>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 109

Iteration: 1
 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 18  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 77
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 78  ISPDYAYGATGHPGIIPPHATLVFDVELL 106

>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 109

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G +  V 
Sbjct: 9   ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWEEGVA 66
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 67  QMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 109

>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp- 12 Complex Length = 107

Iteration: 1
 Score =  109 bits (272), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp- 12 Complex Length = 107

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G +  V 
Sbjct: 7   ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWEEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 65  QMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With Huma Length = 107

Iteration: 1
 Score =  109 bits (272), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With Huma Length = 107

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G +  V 
Sbjct: 7   ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWEEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 65  QMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With A G95a Surface Mutation From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score =  109 bits (272), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 181
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 182 QLGYGARGAAGVIPPNATLVFEVELL 207

>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With A G95a Surface Mutation From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L EG G E    G  V V   G L DG  F      +    F F      VI G D  V 
Sbjct: 111 LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGMVIKGWDEGVQ 167
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
            MK   V  LTI P+  +G   ++    V+PPN+T+ +EVEL+
Sbjct: 168 GMKVGGVRRLTIPPQLGYG---ARGAAGVIPPNATLVFEVELL 207

>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation A54e From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 61/86 (70%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF+F LG G VIKGWD G++ MK G     TIPP
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFEFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 181
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 182 QLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation A54e From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L EG G E    G  V V   G L DG  F      +    FEF      VI G D  V 
Sbjct: 111 LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFEFVLGGGMVIKGWDEGVQ 167
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
            MK   V  LTI P+  +G+  +     V+PPN+T+ +EVEL+
Sbjct: 168 GMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 207

>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin B, Fkbp12 And The Immunosuppressant Drug Fk506 (tacrolimus) Length = 107

Iteration: 1
 Score =  108 bits (271), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKAGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin B, Fkbp12 And The Immunosuppressant Drug Fk506 (tacrolimus) Length = 107

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G +  V 
Sbjct: 7   ISPGDGRTFPKAGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWEEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 65  QMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug Complexes. Crystallographic And Functional Analysis Length = 113

Iteration: 1
 Score =  108 bits (271), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ GD V +HYTGTL +G +FDSS DR +PF+  +G G VIKGWD+GI  +  GE A  T
Sbjct: 22  PKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLT 81
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           IP   AYG  G P  IPPN+TL FDVELL
Sbjct: 82  IPGPYAYGPRGFPGLIPPNSTLVFDVELL 110

>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug Complexes. Crystallographic And Functional Analysis Length = 113

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
           SE+ +    I +I   GDG   P  G +V +   G L++G  F      +    F+    
Sbjct: 1   SEVIEGNVKIDRI-SPGDGATFPKTGDLVTIHYTGTLENGQKF--DSSVDRGSPFQCNIG 57
Query: 324 EEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
             QVI G D  +  +   E A LTI   YA+G    +    ++PPNST+ ++VEL+
Sbjct: 58  VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYG---PRGFPGLIPPNSTLVFDVELL 110

>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score =  108 bits (271), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 61/89 (68%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW  G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWQEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G    V 
Sbjct: 7   ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWQEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 65  QMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation V3i From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score =  108 bits (270), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 181
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 182 QLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation V3i From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L EG G E    G  V V   G L DG  F      +    F F      VI G D  V 
Sbjct: 111 LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGMVIKGWDEGVQ 167
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
            MK   V  LTI P+  +G+  +     V+PPN+T+ +EVEL+
Sbjct: 168 GMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 207

>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed With Cj40 Length = 209

Iteration: 1
 Score =  108 bits (270), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 181
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 182 QLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed With Cj40 Length = 209

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L EG G E    G  V V   G L DG  F      +    F F      VI G D  V 
Sbjct: 111 LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGMVIKGWDEGVQ 167
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
            MK   V  LTI P+  +G+  +     V+PPN+T+ +EVEL+
Sbjct: 168 GMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 207

>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From Burkholderia Pseudomallei Length = 133

Iteration: 1
 Score =  108 bits (270), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 46  GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 105
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 106 QLGYGARGAGGVIPPNATLVFEVELL 131

>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From Burkholderia Pseudomallei Length = 133

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L EG G E    G  V V   G L DG  F      +    F F      VI G D  V 
Sbjct: 35  LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGMVIKGWDEGVQ 91
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
            MK   V  LTI P+  +G+  +     V+PPN+T+ +EVEL+
Sbjct: 92  GMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 131

>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 117

Iteration: 1
 Score =  108 bits (270), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 30  GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 89
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 90  QLGYGARGAGGVIPPNATLVFEVELL 115

>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 117

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 262 TVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFK 321
           +++ +T +  +  + L EG G E    G  V V   G L DG  F      +    F F 
Sbjct: 4   SMTVVTTESGLKYEDLTEGSGAEA-RAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFV 60
Query: 322 TDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
                VI G D  V  MK   V  LTI P+  +G+  +     V+PPN+T+ +EVEL+
Sbjct: 61  LGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 115

>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score =  108 bits (270), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 61/89 (68%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW  G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWAEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G    V 
Sbjct: 7   ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWAEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 65  QMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex Length = 107

Iteration: 1
 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 61/89 (68%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG + DSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex Length = 107

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 9/108 (8%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQ--LFEFKTDEEQVIDGLDRA 334
           +  GDG   P  G    V   G L+DG    KK  S  ++   F+F   +++VI G +  
Sbjct: 7   ISPGDGRTFPKRGQTCVVHYTGMLEDG----KKMDSSRDRNKPFKFMLGKQEVIRGWEEG 62
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 63  VAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH Immunosuppressant Fk506 Length = 107

Iteration: 1
 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRD++ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGVPGIIPPHATLVFDVELL 104

>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH Immunosuppressant Fk506 Length = 107

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P  G    V   G L+DG  F      ++ + F+F   +++VI G +  V 
Sbjct: 7   ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDKNKPFKFMLGKQEVIRGWEEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 65  QMSVGQRAKLTISPDYAYGATGVP---GIIPPHATLVFDVELLKLE 107

>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand Length = 107

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 61/89 (68%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG + DSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand Length = 107

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 9/108 (8%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQ--LFEFKTDEEQVIDGLDRA 334
           +  GDG   P  G    V   G L+DG    KK  S  ++   F+F   +++VI G +  
Sbjct: 7   ISPGDGRTFPKRGQTCVVHYTGMLEDG----KKVDSSRDRNKPFKFMLGKQEVIRGWEEG 62
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 63  VAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation D44g From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score =  106 bits (264), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 59/86 (68%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +F SS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 122 GQTVSVHYTGWLTDGQKFGSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 181
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 182 QLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation D44g From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQ-LFEFKTDEEQVIDGLDRAV 335
           L EG G E    G  V V   G L DG  F   G S++    F F      VI G D  V
Sbjct: 111 LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF---GSSKDRNDPFAFVLGGGMVIKGWDEGV 166
Query: 336 ITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
             MK   V  LTI P+  +G+  +     V+PPN+T+ +EVEL+
Sbjct: 167 QGMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 207

>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score =  105 bits (263), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+G++ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGFEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G +  V 
Sbjct: 7   ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGFEEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 65  QMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score =  105 bits (261), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 61/89 (68%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+G + G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGLEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI GL+  V 
Sbjct: 7   ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGLEEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 65  QMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|2PBC|A Chain A, Fk506-Binding Protein 2 Length = 102

Iteration: 1
 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           GD + +HYTG L DGT+FDSS  ++ PF F+LG G VIKGWD G+  M +GE     IP 
Sbjct: 9   GDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPS 68
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           EL YGE G+PP IP  ATL F+VELL
Sbjct: 69  ELGYGERGAPPKIPGGATLVFEVELL 94

>pdb|2PBC|A Chain A, Fk506-Binding Protein 2 Length = 102

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 287 NEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL 346
            +G V+ +   GKL+DGT F       + Q F F     QVI G D+ ++ M + E   L
Sbjct: 7   RKGDVLHMHYTGKLEDGTEF--DSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKL 64
Query: 347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
            I  E  +G   +  +   +P  +T+ +EVEL+  E+  E
Sbjct: 65  VIPSELGYGERGAPPK---IPGGATLVFEVELLKIERRTE 101

>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin Length = 107

Iteration: 1
 Score =  103 bits (256), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 62/91 (68%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L +G +FDSSRDR+ PFKF +G+  VIKG++ G   M  G+ A  T
Sbjct: 16  PKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLSW 143
             P++AYG +G P  IPPNATL FDVELL+ 
Sbjct: 76  CTPDVAYGATGHPGVIPPNATLIFDVELLNL 106

>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin Length = 107

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P +G    V   G LQ+G  F      +  + F+F+  +++VI G +    
Sbjct: 7   ISPGDGRTFPKKGQTCVVHYTGMLQNGKKF--DSSRDRNKPFKFRIGKQEVIKGFEEGAA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LT  P+ A+G+        V+PPN+T+ ++VEL++ E
Sbjct: 65  QMSLGQRAKLTCTPDVAYGATGHP---GVIPPNATLIFDVELLNLE 107

>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation R92g From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score = 98.6 bits (244), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 26  GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 85
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 86  QLGYGAGGAGGVIPPNATLVFEVELL 111

>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation R92g From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L EG G E    G  V V   G L DG  F      +    F F      VI G D  V 
Sbjct: 15  LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGMVIKGWDEGVQ 71
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
            MK   V  LTI P+       +     V+PPN+T+ +EVEL+
Sbjct: 72  GMKVGGVRRLTIPPQLG---YGAGGAGGVIPPNATLVFEVELL 111

>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506 Binding Domain From Plasmodium Vivax Length = 126

Iteration: 1
 Score = 98.2 bits (243), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Query: 51  DTPENGDEVEVHYTGTL-LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA 109
           + P+ G+EV VHY G L   G  FDSSR+R+ PFKF LGQG VIKGWDI + +M K E  
Sbjct: 31  NAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEVIKGWDICVASMTKNEKC 90
Query: 110 VFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
              +  +  YGE G   +IP N+ L F++EL+S+
Sbjct: 91  SVRLDSKYGYGEEGCGESIPGNSVLIFEIELISF 124

>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506 Binding Domain From Plasmodium Vivax Length = 126

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 8/119 (6%)
Query: 266 ITDDKKVIKKILKEGDGFER--PNEGAVVKVKLIGKLQD-GTVFVKKGHSEEEQLFEFKT 322
           +T+D  V+K IL++G+G E   P +G  V V  +GKL+  G VF      E    F+F  
Sbjct: 11  LTEDGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVF--DSSRERNVPFKFHL 68
Query: 323 DEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            + +VI G D  V +M KNE   + +  +Y +G     +    +P NS + +E+EL+SF
Sbjct: 69  GQGEVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGES---IPGNSVLIFEIELISF 124

>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Plasmodium Falciparum Fkbp35 In Complex With Fk506 Length = 129

Iteration: 1
 Score = 95.5 bits (236), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 51  DTPENGDEVEVHYTGTLLD-GTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA 109
           + P+ G+EV VHY G L   G  FDSS DR+ PFKF L QG VIKGWDI + +M+K E  
Sbjct: 32  NIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKC 91
Query: 110 VFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
           +  I     YG+ G   +IP N+ L F++ELLS+
Sbjct: 92  LVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Plasmodium Falciparum Fkbp35 In Complex With Fk506 Length = 129

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 8/120 (6%)
Query: 265 EITDDKKVIKKILKEGDGFER--PNEGAVVKVKLIGKLQD-GTVFVKKGHSEEEQLFEFK 321
           E+T D  VIK ILK+GD  E   P +G  V V  +GKL+  G VF      +    F+F 
Sbjct: 11  ELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVF--DSSFDRNVPFKFH 68
Query: 322 TDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            ++ +VI G D  V +M+KNE  L+ I   Y +G     +    +P NS + +E+EL+SF
Sbjct: 69  LEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGES---IPGNSVLLFEIELLSF 125

>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35 From Plasmodium Falciparum Length = 135

Iteration: 1
 Score = 95.5 bits (236), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 51  DTPENGDEVEVHYTGTLLD-GTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA 109
           + P+ G+EV VHY G L   G  FDSS DR+ PFKF L QG VIKGWDI + +M+K E  
Sbjct: 32  NIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKC 91
Query: 110 VFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
           +  I     YG+ G   +IP N+ L F++ELLS+
Sbjct: 92  LVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35 From Plasmodium Falciparum Length = 135

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 8/120 (6%)
Query: 265 EITDDKKVIKKILKEGDGFER--PNEGAVVKVKLIGKLQD-GTVFVKKGHSEEEQLFEFK 321
           E+T D  VIK ILK+GD  E   P +G  V V  +GKL+  G VF      +    F+F 
Sbjct: 11  ELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVF--DSSFDRNVPFKFH 68
Query: 322 TDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            ++ +VI G D  V +M+KNE  L+ I   Y +G     +    +P NS + +E+EL+SF
Sbjct: 69  LEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGES---IPGNSVLLFEIELLSF 125

>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25 Length = 116

Iteration: 1
 Score = 88.6 bits (218), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSS-------RDRSTPFKFTLGQGNVIKGWDIGIKTMKK 105
           P+ GD V   YTGTL DGT FD++       +  + P  F +G G VI+GWD  + TM K
Sbjct: 17  PKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSK 76
Query: 106 GENAVFTIPPELAYGESGSPPT-IPPNATLQFDVELL 141
           GE A   I PE AYG+ G P   IPPNA L F+VEL+
Sbjct: 77  GEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELV 113

>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25 Length = 116

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Query: 271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF-----VKKGHSEEEQLFEFKTDEE 325
           K  K +LK+GD    P +G VV     G LQDGTVF           +  +   FK    
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVG 61
Query: 326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           +VI G D A++TM K E A L I PE+A+G  +  Q  A +PPN+ + +EVELV  +
Sbjct: 62  KVIRGWDEALLTMSKGEKARLEIEPEWAYG--KKGQPDAKIPPNAKLTFEVELVDID 116

>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From Escherichia Coli Length = 224

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           + P++ D V V+Y GTL+DG +FD+S  R  P  F L    VI GW  G+K +KKG    
Sbjct: 134 EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIK 191
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELL 141
             IPPELAYG++G  P IPPN+TL FDVELL
Sbjct: 192 LVIPPELAYGKAGV-PGIPPNSTLVFDVELL 221

>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli Length = 245

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           + P++ D V V+Y GTL+DG +FD+S  R  P  F L    VI GW  G+K +KKG    
Sbjct: 134 EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIK 191
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELL 141
             IPPELAYG++G  P IPPN+TL FDVELL
Sbjct: 192 LVIPPELAYGKAGV-PGIPPNSTLVFDVELL 221

>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator (Tcmip) Length = 167

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Query: 52  TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVF 111
            P   D+ EVHYTG L DGT FDSSR+R  P  F   +  VIKGW   ++ M++G+    
Sbjct: 52  APAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPNE--VIKGWTEALQLMREGDRWRL 109
Query: 112 TIPPELAYGESGSPPTIPPNATLQFDVELLS 142
            IP +LAYG +G    IPP + L+FDVEL+S
Sbjct: 110 FIPYDLAYGVTGGGGMIPPYSPLEFDVELIS 140

>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex Length = 119

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 57/97 (58%), Gaps = 8/97 (8%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRST-------PFKFTLGQGNVIKGWDIGIKTMKK 105
           P+ GD V   YTGTL DGT FD++   S+       P  F +G G VI+GWD  + TM K
Sbjct: 20  PKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSK 79
Query: 106 GENAVFTIPPELAYGESGSPPT-IPPNATLQFDVELL 141
           GE A   I PE AYG+ G P   IPPN  L F+VEL+
Sbjct: 80  GEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELV 116

>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex Length = 119

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF-----VKKGHSEEEQLFEFKTDEE 325
           K  K ILK+GD    P +G VV     G L DGTVF           +  +   FK    
Sbjct: 5   KYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVG 64
Query: 326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           +VI G D A++TM K E A L I PE+A+G  +  Q  A +PPN+ + +EVELV  +
Sbjct: 65  KVIRGWDEALLTMSKGEKARLEIEPEWAYG--KKGQPDAKIPPNTKLIFEVELVDID 119

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 111/241 (46%), Gaps = 19/241 (7%)
Query: 237 SASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKL 296
           S    EG VPP              + +E+ D+K V K+I+KEG G  +P++ +   +  
Sbjct: 28  SEPSQEGNVPPKVD-----------SEAEVLDEK-VSKQIIKEGHG-SKPSKYSTCFLHY 74
Query: 297 IGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGS 356
               ++     +    E++ +      E++ + GL   V +MK  E AL+ +  E A+G 
Sbjct: 75  RAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK 134
Query: 357 AESQQELAVVPPNSTVHYEVELVSFEKEKE---SWDMNTXXXXXXXXXXXXQGNTLFKAG 413
            E       VPP + + YEVE++ F++ KE     DM               GN+LFK  
Sbjct: 135 -EGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEE 193
Query: 414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKV--ACNLNNAACKLKLKDYKQAEKLC 471
           K   A ++YE A+ Y+  D  F    K Q  AL V   C+LN AAC +KLK Y +A   C
Sbjct: 194 KLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHC 253
Query: 472 T 472
Sbjct: 254 N 254

>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13 Length = 129

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/97 (42%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDI------GIKTMKKGENA 109
           G  ++ HY G L +G  FDSS +R  P  F +G G VIKGWD       GI  M  G   
Sbjct: 30  GQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKR 89
Query: 110 VFTIPPELAYGESGS-----PPTIPPNATLQFDVELL 141
              IPPELAYG+ G+        IPP + L FD+E +
Sbjct: 90  TLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 126

>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6 Length = 134

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 59  VEVHYTGTLLDGTQ-FDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL 117
           V V Y+G L    + FDS+  R TP    LG+   + G ++G+ +M++GE A F   P  
Sbjct: 47  VLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNY 106
Query: 118 AYGESGSPPTIPPNATLQFDVELLSW 143
           AYG  G PP IPPN T+ F++ELL +
Sbjct: 107 AYGTLGCPPLIPPNTTVLFEIELLDF 132

>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6 Length = 134

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 19/124 (15%)
Query: 265 EITDDKKVIKKILKEGDG-FERPNEGAVVKVKLIGKLQ------DGTVFVKKGHSEEEQL 317
           +I+ D+ V+K +++EG G    P+  A V VK  G L+      D   F K         
Sbjct: 21  DISGDRGVLKDVIREGAGDLVAPD--ASVLVKYSGYLEHMDRPFDSNYFRKTPRL----- 73
Query: 318 FEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVE 377
              K  E+  + G++  +++M++ E+A     P YA+G+        ++PPN+TV +E+E
Sbjct: 74  --MKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCP---PLIPPNTTVLFEIE 128
Query: 378 LVSF 381
           L+ F
Sbjct: 129 LLDF 132

>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans Isomerase Fkbp14 Length = 125

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/91 (43%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 54  ENGDEVEVHYTGTL-LDGTQFDSSR--DRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           + GD + VHY G L  DG+ F S+   +   P  FTLG    +KGWD G+K M  GE   
Sbjct: 30  KGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRK 89
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELL 141
             IPP L YG+ G    IPP +TL F+++LL
Sbjct: 90  LIIPPALGYGKEGK-GKIPPESTLIFNIDLL 119

>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity Potentiator Protein (Mip) A Major Virulence Factor From Legionella Pneumophila Length = 213

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P   D V V YTG L+DGT FDS+     P  F + Q  VI GW   ++ M  G      
Sbjct: 121 PGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQ--VIPGWTEALQLMPAGSTWEIY 178
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLS 142
           +P  LAYG       I PN TL F + L+S
Sbjct: 179 VPSGLAYGPRSVGGPIGPNETLIFKIHLIS 208

>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella Pneumophila Mip Length = 137

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P   D V V YTG L+DGT FDS+     P  F + Q  VI GW   ++ M  G      
Sbjct: 45  PGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQ--VIPGWTEALQLMPAGSTWEIY 102
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLS 142
           +P  LAYG       I PN TL F + L+S
Sbjct: 103 VPSGLAYGPRSVGGPIGPNETLIFKIHLIS 132

>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato Str. Dc3000 (Pspto Dc3000) Length = 219

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+    VEV Y G L DG  FD S   + P  F L   +VI GW   ++ M  G      
Sbjct: 132 PDANGRVEVRYVGRLPDGKIFDQS---TQPQWFRLD--SVISGWTSALQNMPTGAKWRLV 186
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLS 142
           IP + AYG  G+   I P   L F++EL++
Sbjct: 187 IPSDQAYGAEGAGDLIDPFTPLVFEIELIA 216

>pdb|2F2D|A Chain A, Solution Structure Of The Fk506-Binding Domain Of Human Fkbp38 Length = 121

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P  G  V VH   +L +GT+     +      FTLG  +VI+  D+ +  M  GE A+ T
Sbjct: 28  PVKGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSVPLMDVGETAMVT 83
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVEL 140
              +  YG  G  P IPP+A L  +V L
Sbjct: 84  ADSKYCYGPQGRSPYIPPHAALCLEVTL 111

>pdb|2F2D|A Chain A, Solution Structure Of The Fk506-Binding Domain Of Human Fkbp38 Length = 121

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 274 KKILKEGD-GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLD 332
           KK L  G  G  RP +G VV V L   L++GT        +EE    F   +  VI  LD
Sbjct: 15  KKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT------RVQEEPELVFTLGDCDVIQALD 68
Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
            +V  M   E A++T   +Y +G    Q     +PP++ +  EV L
Sbjct: 69  LSVPLMDVGETAMVTADSKYCYG---PQGRSPYIPPHAALCLEVTL 111

>pdb|2AWG|A Chain A, Structure Of The Ppiase Domain Of The Human Fk506-Binding Protein 8 Length = 118

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P  G  V VH   +L +GT+     +      FTLG  +VI+  D+ +  M  GE A+ T
Sbjct: 30  PVKGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSVPLMDVGETAMVT 85
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVEL 140
              +  YG  G  P IPP+A L  +V L
Sbjct: 86  ADSKYCYGPQGRSPYIPPHAALCLEVTL 113

>pdb|2AWG|A Chain A, Structure Of The Ppiase Domain Of The Human Fk506-Binding Protein 8 Length = 118

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 274 KKILKEGD-GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLD 332
           KK L  G  G  RP +G VV V L   L++GT        +EE    F   +  VI  LD
Sbjct: 17  KKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT------RVQEEPELVFTLGDCDVIQALD 70
Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
            +V  M   E A++T   +Y +G    Q     +PP++ +  EV L
Sbjct: 71  LSVPLMDVGETAMVTADSKYCYG---PQGRSPYIPPHAALCLEVTL 113

>pdb|2JWX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human Fkbp38 (Fkbp38ntd) Length = 157

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P  G  V VH   +L +GT+     +      FTLG  +VI+  D+ +  M  GE A+ T
Sbjct: 60  PVKGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSVPLMDVGETAMVT 115
Query: 113 IPPELAYGESGS-PPTIPPNATLQFDVEL 140
              +  YG  GS  P IPP+A L  +V L
Sbjct: 116 ADSKYCYGPQGSRSPYIPPHAALCLEVTL 144

>pdb|2JWX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human Fkbp38 (Fkbp38ntd) Length = 157

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 274 KKILKEGD-GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLD 332
           KK L  G  G  RP +G VV V L   L++GT        +EE    F   +  VI  LD
Sbjct: 47  KKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT------RVQEEPELVFTLGDCDVIQALD 100
Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
            +V  M   E A++T   +Y +G   S+     +PP++ +  EV L
Sbjct: 101 LSVPLMDVGETAMVTADSKYCYGPQGSRS--PYIPPHAALCLEVTL 144

>pdb|2D9F|A Chain A, Solution Structure Of Ruh-047, An Fkbp Domain From Human Cdna Length = 135

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P  G  V VH   +L +GT+     +      FTLG  +VI+  D+ +  M  GE A+ T
Sbjct: 34  PVKGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSVPLMDVGETAMVT 89
Query: 113 IPPELAYGESGS-PPTIPPNATLQFDVEL 140
              +  YG  GS  P IPP+A L  +V L
Sbjct: 90  ADSKYCYGPQGSRSPYIPPHAALCLEVTL 118

>pdb|2D9F|A Chain A, Solution Structure Of Ruh-047, An Fkbp Domain From Human Cdna Length = 135

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 274 KKILKEGD-GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLD 332
           KK L  G  G  RP +G VV V L   L++GT        +EE    F   +  VI  LD
Sbjct: 21  KKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT------RVQEEPELVFTLGDCDVIQALD 74
Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
            +V  M   E A++T   +Y +G   S+     +PP++ +  EV L
Sbjct: 75  LSVPLMDVGETAMVTADSKYCYGPQGSRS--PYIPPHAALCLEVTL 118

>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana Length = 180

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 72  QFDSSRDRSTPFKFTLG-QGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESG--SPPTI 128
           +F+ +     P +  LG +   + G  IG+ +MK GE A+  +  ELAYG+ G  S P +
Sbjct: 84  KFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNV 143
Query: 129 PPNATLQFDVELL 141
           PP A L ++VE++
Sbjct: 144 PPMADLLYEVEVI 156

>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana Length = 180

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 237 SASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKL 296
           S    EG VPP    +           +E+ D+K V K+I+KEG G  +P++ +   +  
Sbjct: 28  SEPSQEGNVPPKVDSE-----------AEVLDEK-VSKQIIKEGHG-SKPSKYSTCFLHY 74
Query: 297 IGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGS 356
               ++     +    E++ +      E++ + GL   V +MK  E AL+ +  E A+G 
Sbjct: 75  RAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK 134
Query: 357 AESQQELAVVPPNSTVHYEVELVSFEKEKE 386
            E       VPP + + YEVE++ F++ KE
Sbjct: 135 -EGNFSFPNVPPMADLLYEVEVIGFDETKE 163

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFG-DEEKKQAKALKVACNLNNAACKLKLKDY 464
           GNT FK+  +  A K+Y K ++Y+E   +   D +  + + + ++C LN  ACKLK+ D+
Sbjct: 230 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDW 289
Query: 465 KQAEKLCTKKCE 476
           + A   C +  E
Sbjct: 290 QGAVDSCLEALE 301

>pdb|4DT4|A Chain A, Crystal Structure Of The Ppiase-Chaperone Slpa With The Chaperone Binding Site Occupied By The Linker Of The Purification Tag Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 59  VEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
           V VH+T  L DGT  +S+R+   P  F LG  ++ +G +  +  +K G+   F++ P+ A
Sbjct: 31  VLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAA 90
Query: 119 YG 120
           +G
Sbjct: 91  FG 92

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	496
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	1e-159
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	4e-57
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	1e-94
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	5e-58
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	7e-29
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-87
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-64
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	9e-67
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	7e-25
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	4e-19
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	3e-66
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	7e-26
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	3e-19
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	3e-63
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	2e-26
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	1e-18
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	4e-63
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	4e-24
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	4e-17
2ppn_A	107	FK506-binding protein 1A; high resolution protein	9e-63
2ppn_A	107	FK506-binding protein 1A; high resolution protein	4e-25
2ppn_A	107	FK506-binding protein 1A; high resolution protein	6e-17
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	2e-61
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	7e-23
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	1e-15
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	5e-61
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	8e-25
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	7e-18
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	6e-59
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	1e-22
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	1e-15
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	3e-58
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	2e-26
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	8e-17
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	9e-58
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	2e-20
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	4e-12
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-56
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	9e-32
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	1e-21
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	2e-56
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	9e-26
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	8e-16
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	2e-55
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	1e-31
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	2e-25
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	2e-55
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	2e-29
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	7e-25
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	3e-55
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	5e-19
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	8e-12
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	2e-53
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	4e-28
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	5e-20
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	2e-52
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	1e-19
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	1e-15
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	4e-52
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	2e-29
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	2e-22
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	7e-52
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	3e-16
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	6e-12
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	4e-51
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	1e-18
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	2e-13
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	8e-49
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	2e-17
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	3e-10
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	1e-39
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	2e-14
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	3e-09
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	5e-38
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	3e-13
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	2e-09
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	1e-37
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	1e-14
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	5e-09
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-32
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	3e-27
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-19
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	4e-19
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	9e-06
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	3e-05
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	3e-16
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	3e-16
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	9e-05
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	4e-16
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	4e-06
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	1e-04
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	2e-15
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	6e-06
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	1e-04
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	9e-15
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	3e-05
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	3e-14
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	3e-13
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	4e-12
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-09
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	4e-09
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	6e-09
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	8e-09
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-08
2l6j_A	111	TPR repeat-containing protein associated with HSP;	1e-08
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-08
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-08
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	3e-08
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	6e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-07
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	3e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-06
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	2e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-05
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	9e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-04

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score =  455 bits (1172), Expect = e-159
 Identities = 289/358 (80%), Positives = 318/358 (88%), Gaps = 2/358 (0%)

Query: 27  KVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
           KVGEE EIG QGLKKKL+KEGEGWDTPE GDEVEVHYTGTLLDG +FDSSRDR   FKF 
Sbjct: 1   KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFK 60

Query: 87  LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
           LGQG VIKGWD GIKTMKKGENA+FTIPPELAYGESGSPPTIP NATLQFDVELLSWTSV
Sbjct: 61  LGQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSV 120

Query: 147 KDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
           +DI KDGGI KKILKEG+KWENPKD DEV V YEARLEDG VV K++GVEFTVKDGH CP
Sbjct: 121 RDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCP 180

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
            LAKAVKTMKKGEKVLLAVKPQYGFGE G+ A+G  GAVPPNA+L I LELVSWKTV+EI
Sbjct: 181 ALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEI 240

Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
            DDKK++KK+LKE +G+ERPNEGAVV VK+ GKLQDGTVF+KKGH +E++ FEFKTDEE 
Sbjct: 241 GDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGH-DEQEPFEFKTDEEA 299

Query: 327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
           VI+GLDRAV+ MKK EVAL+TI PEYA+GS ES+Q+ A+VPPNSTV YEVELVSF K+
Sbjct: 300 VIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQD-AIVPPNSTVIYEVELVSFVKD 356

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score =  192 bits (490), Expect = 4e-57
 Identities = 91/250 (36%), Positives = 128/250 (51%), Gaps = 17/250 (6%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPT 207
             G+ KK+LKEGE W+ P+  DEV V+Y   L DG        + D  +F +  G     
Sbjct: 10  KQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKG 69

Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEIT 267
             + +KTMKKGE  L  + P+  +GE G         +P NATLQ  +EL+SW +V +I 
Sbjct: 70  WDQGIKTMKKGENALFTIPPELAYGESGSP-----PTIPANATLQFDVELLSWTSVRDIA 124

Query: 268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQV 327
            D  + KKILKEGD +E P +   V VK   +L+DGTV        + +  EF   +  +
Sbjct: 125 KDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVV------SKSEGVEFTVKDGHL 178

Query: 328 IDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELA--VVPPNSTVHYEVELVSFEKEK 385
              L +AV TMKK E  LL + P+Y FG            VPPN+++  ++ELVS++   
Sbjct: 179 CPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVT 238

Query: 386 ESWDMNTEEK 395
           E  D     K
Sbjct: 239 EIGDDKKILK 248

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score =  287 bits (736), Expect = 1e-94
 Identities = 107/262 (40%), Positives = 142/262 (54%), Gaps = 11/262 (4%)

Query: 9   AANEMDADMDLPDDAPMMKVGEEKEI-GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTL 67
            A EM A       AP+   G +     ++G+ K + +EG G + P  GD V VHYTG L
Sbjct: 22  TAEEMKATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWL 81

Query: 68  LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPT 127
           LDGT+FDSS DR   F F LG+G VIK WDI I TMK GE    T  PE AYG +GSPP 
Sbjct: 82  LDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPK 141

Query: 128 IPPNATLQFDVELLS-WTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDG 186
           IPPNATL F+VEL           +DGGII++I   GE +  P +   V V  E   +D 
Sbjct: 142 IPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDK 201

Query: 187 MVVGKADGVEFTVKDGH---FCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEG 243
           +   +   + F + +G        L +A++ M+KGE  ++ +KP Y FG  GK     + 
Sbjct: 202 LFDQR--ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKE----KF 255

Query: 244 AVPPNATLQIALELVSWKTVSE 265
            +PPNA L+  L L S++   E
Sbjct: 256 QIPPNAELKYELHLKSFEKAKE 277

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score =  192 bits (490), Expect = 5e-58
 Identities = 86/283 (30%), Positives = 134/283 (47%), Gaps = 35/283 (12%)

Query: 127 TIPPNATLQFDVELLSWTSVK------------DICKDGGIIKKILKEGEKWENPKDLDE 174
            + P  +     E+ +  S                 +D G++K I +EG   E P   D 
Sbjct: 13  GLVPRGSHMTAEEMKATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGTGTEMPMIGDR 72

Query: 175 VLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYG 230
           V V+Y   L DG      + + D   F +  G        A+ TMK GE   +  KP+Y 
Sbjct: 73  VFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYA 132

Query: 231 FGEKGKSASGNEGAVPPNATLQIALELVS-WKTVSEITDDKKVIKKILKEGDGFERPNEG 289
           +G  G         +PPNATL   +EL           +D  +I++I   G+G+ +PNEG
Sbjct: 133 YGSAGSP-----PKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEG 187

Query: 290 AVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID---GLDRAVITMKKNEVALL 346
           A+V+V L G  +D  +F ++          F+  E + +D   GL+RA+  M+K E +++
Sbjct: 188 AIVEVALEGYYKDK-LFDQRE-------LRFEIGEGENLDLPYGLERAIQRMEKGEHSIV 239

Query: 347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWD 389
            + P YAFGS   ++    +PPN+ + YE+ L SFEK KESW+
Sbjct: 240 YLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSFEKAKESWE 280

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score =  114 bits (287), Expect = 7e-29
 Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 23/179 (12%)

Query: 234 KGKSASGNEGAVPPNATLQIALELVSWKTVSE------------ITDDKKVIKKILKEGD 281
                  +   + P  +   A E+ + ++ ++               D+ V+K I +EG 
Sbjct: 3   SSHHHHHHSSGLVPRGSHMTAEEMKATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGT 62

Query: 282 GFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGLDRAVITM 338
           G E P  G  V V   G L DGT F   + +        F F   + +VI   D A+ TM
Sbjct: 63  GTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRK-----DKFSFDLGKGEVIKAWDIAIATM 117

Query: 339 KKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIE 397
           K  EV  +T  PEYA+GSA S      +PPN+T+ +EVEL  F+ E  + + +      
Sbjct: 118 KVGEVCHITCKPEYAYGSAGSP---PKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRR 173

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  275 bits (704), Expect = 1e-87
 Identities = 109/332 (32%), Positives = 179/332 (53%), Gaps = 19/332 (5%)

Query: 147 KDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVV----GKADGVEFTVKDG 202
               KD G++K + + G   E P   D+V V+Y+ +L +G        + +   F++  G
Sbjct: 25  ITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKG 84

Query: 203 HFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKT 262
                    V TMK+GE   L  KP+Y +G  G         +P NATL   +EL+ +K 
Sbjct: 85  QVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGS-----LPKIPSNATLFFEIELLDFKG 139

Query: 263 VSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKT 322
             ++ +D  +I++  ++G+G+  PNEGA V++ L G+   G +F  +  +     F    
Sbjct: 140 -EDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRC-GGRMFDCRDVA-----FTVGE 192

Query: 323 DEEQ-VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            E+  +  G+D+A+  M++ E  +L + P Y FG  E+ +    + PN+ + YEV L SF
Sbjct: 193 GEDHDIPIGIDKALEKMQREEQCILYLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSF 250

Query: 382 EKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKK 441
           EK KESW+M+T+EK+E A   KE+G   FK GKY +A  +Y K V ++E +    ++E K
Sbjct: 251 EKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESK 310

Query: 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473
            +++  +A  LN A C LKL++Y +A + C K
Sbjct: 311 ASESFLLAAFLNLAMCYLKLREYTKAVECCDK 342

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  215 bits (548), Expect = 1e-64
 Identities = 100/262 (38%), Positives = 151/262 (57%), Gaps = 11/262 (4%)

Query: 9   AANEMDADMDLPDDAPMMKVGEEKEI-GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTL 67
             +E   + +    A + + GE+     ++G+ K + + G G +TP  GD+V VHY G L
Sbjct: 2   TTDEGAKNNEESPTATVAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL 61

Query: 68  LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPT 127
            +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMK+GE       PE AYG +GS P 
Sbjct: 62  SNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGSLPK 121

Query: 128 IPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM 187
           IP NATL F++ELL +   +D+ +DGGII++  ++GE + NP +   V ++ E R    M
Sbjct: 122 IPSNATLFFEIELLDFK-GEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCGGRM 180

Query: 188 VVGKADGVEFTVKDGHF---CPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGA 244
              +   V FTV +G        + KA++ M++ E+ +L + P+YGFGE GK     +  
Sbjct: 181 FDCR--DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKP----KFG 234

Query: 245 VPPNATLQIALELVSWKTVSEI 266
           + PNA L   + L S++   E 
Sbjct: 235 IEPNAELIYEVTLKSFEKAKES 256

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  217 bits (554), Expect = 9e-67
 Identities = 84/213 (39%), Positives = 135/213 (63%), Gaps = 13/213 (6%)

Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
           S + +D  +I++I   G+G+ +PNEGA+V+V L G  +D           +++   F+  
Sbjct: 19  SHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------DQRELRFEIG 70

Query: 324 EEQ---VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
           E +   +  GL+RA+  M+K E +++ + P YAFGS    +E   +PPN+ + YE+ L S
Sbjct: 71  EGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGS--VGKEKFQIPPNAELKYELHLKS 128

Query: 381 FEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEK 440
           FEK KESW+MN+EEK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF +EE 
Sbjct: 129 FEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA 188

Query: 441 KQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473
           ++A+AL++A +LN A C LKL+ +  A + C K
Sbjct: 189 QKAQALRLASHLNLAMCHLKLQAFSAAIESCNK 221

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  104 bits (260), Expect = 7e-25
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 10/119 (8%)

Query: 35  GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQG---N 91
            + G+ +++   GEG+  P  G  VEV   G   D   FD         +F +G+G   +
Sbjct: 23  EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKL-FDQR-----ELRFEIGEGENLD 76

Query: 92  VIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPT-IPPNATLQFDVELLSWTSVKDI 149
           +  G +  I+ M+KGE+++  + P  A+G  G     IPPNA L++++ L S+   K+ 
Sbjct: 77  LPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKES 135

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 87.6 bits (217), Expect = 4e-19
 Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 9/124 (7%)

Query: 148 DICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDG---HF 204
            + +DGGII++I   GE +  P +   V V  E   +D +   +   + F + +G     
Sbjct: 20  HMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQR--ELRFEIGEGENLDL 77

Query: 205 CPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVS 264
              L +A++ M+KGE  ++ +KP Y FG  GK     +  +PPNA L+  L L S++   
Sbjct: 78  PYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKE----KFQIPPNAELKYELHLKSFEKAK 133

Query: 265 EITD 268
           E  +
Sbjct: 134 ESWE 137

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score =  209 bits (533), Expect = 3e-66
 Identities = 71/134 (52%), Positives = 91/134 (67%), Gaps = 6/134 (4%)

Query: 29  GEEKEI---GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKF 85
           GE+ +I    + G+ K + KEG+G   P  G  V+VHY GTL +GT+FDSSRDR   F F
Sbjct: 3   GEKIDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSF 62

Query: 86  TLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTS 145
            LG+GNVIKGWD+G+ TM KGE A FTI  +  YG++GSPP IP  ATL F+VEL  W S
Sbjct: 63  NLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEW-S 121

Query: 146 VKDIC--KDGGIIK 157
            +DI   +DG I++
Sbjct: 122 AEDISPDRDGTILR 135

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score =  101 bits (254), Expect = 7e-26
 Identities = 47/129 (36%), Positives = 61/129 (47%), Gaps = 11/129 (8%)

Query: 266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKT 322
              D  V+K I KEG G  +P  G  VKV  +G L++GT F     +G       F F  
Sbjct: 10  PKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRG-----DQFSFNL 64

Query: 323 DEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
               VI G D  V TM K EVA  TI  +Y +G A S      +P  +T+ +EVEL  + 
Sbjct: 65  GRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSP---PKIPGGATLIFEVELFEWS 121

Query: 383 KEKESWDMN 391
            E  S D +
Sbjct: 122 AEDISPDRD 130

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score = 82.7 bits (205), Expect = 3e-19
 Identities = 39/129 (30%), Positives = 54/129 (41%), Gaps = 9/129 (6%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCP 206
           KDGG++K I KEG+    P     V V+Y   LE+G        + D   F +  G+   
Sbjct: 12  KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIK 71

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
                V TM KGE     ++  YG+G+ G   S     +P  ATL   +EL  W      
Sbjct: 72  GWDLGVATMTKGEVAEFTIRSDYGYGDAG---SP--PKIPGGATLIFEVELFEWSAEDIS 126

Query: 267 TDDKKVIKK 275
            D    I +
Sbjct: 127 PDRDGTILR 135

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score =  200 bits (512), Expect = 3e-63
 Identities = 61/123 (49%), Positives = 81/123 (65%), Gaps = 1/123 (0%)

Query: 22  DAPMMKVGEEKEI-GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRS 80
            A + + GE+     ++G+ K + + G G +TP  GD+V VHY G L +G +FDSS DR+
Sbjct: 3   PATVTEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRN 62

Query: 81  TPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVEL 140
            PF F+LG+G VIK WDIG+ TMKKGE       PE AYG +GS P IP NATL F++EL
Sbjct: 63  EPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIEL 122

Query: 141 LSW 143
           L +
Sbjct: 123 LDF 125

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score =  103 bits (258), Expect = 2e-26
 Identities = 44/122 (36%), Positives = 62/122 (50%), Gaps = 11/122 (9%)

Query: 266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKT 322
              D+ V+K + + G+G E P  G  V V   GKL +G  F     +      + F F  
Sbjct: 15  SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRN-----EPFVFSL 69

Query: 323 DEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            + QVI   D  V TMKK E+  L   PEYA+GSA S      +P N+T+ +E+EL+ F+
Sbjct: 70  GKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSL---PKIPSNATLFFEIELLDFK 126

Query: 383 KE 384
            E
Sbjct: 127 GE 128

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score = 81.1 bits (201), Expect = 1e-18
 Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 9/115 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCP 206
           KD G++K + + G   E P   D+V V+Y+ +L +G        + +   F++  G    
Sbjct: 17  KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIK 76

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
                V TMKKGE   L  KP+Y +G  G   S     +P NATL   +EL+ +K
Sbjct: 77  AWDIGVATMKKGEICHLLCKPEYAYGSAG---SL--PKIPSNATLFFEIELLDFK 126

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score =  200 bits (510), Expect = 4e-63
 Identities = 56/111 (50%), Positives = 70/111 (63%)

Query: 33  EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNV 92
           E+    +K   +  G+G   P+ GD V +HYTGTL +G +FDSS DR +PF+  +G G V
Sbjct: 2   EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQV 61

Query: 93  IKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
           IKGWD+GI  +  GE A  TIP   AYG  G P  IPPN+TL FDVELL  
Sbjct: 62  IKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLKV 112

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score = 96.1 bits (240), Expect = 4e-24
 Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 12/120 (10%)

Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEF 320
           SE+ +   V    +  GDG   P  G +V +   G L++G  F   V +G       F+ 
Sbjct: 1   SEVIEGN-VKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRG-----SPFQC 54

Query: 321 KTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
                QVI G D  +  +   E A LTI   YA+G         ++PPNST+ ++VEL+ 
Sbjct: 55  NIGVGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFP---GLIPPNSTLVFDVELLK 111

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score = 76.1 bits (188), Expect = 4e-17
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 9/113 (7%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPT 207
           +G +    +  G+    PK  D V ++Y   LE+G      V +    +  +  G     
Sbjct: 5   EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKG 64

Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260
               +  +  GEK  L +   Y +G +G       G +PPN+TL   +EL+  
Sbjct: 65  WDVGIPKLSVGEKARLTIPGPYAYGPRG---FP--GLIPPNSTLVFDVELLKV 112

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score =  198 bits (507), Expect = 9e-63
 Identities = 54/106 (50%), Positives = 70/106 (66%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           G++ + +  G+G   P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
            G+  M  G+ A  TI P+ AYG +G P  IPP+ATL FDVELL  
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score = 98.4 bits (246), Expect = 4e-25
 Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 11/114 (9%)

Query: 272 VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVI 328
           V  + +  GDG   P  G    V   G L+DG  F     +      + F+F   +++VI
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRN-----KPFKFMLGKQEVI 56

Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            G +  V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 57  RGWEEGVAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score = 75.7 bits (187), Expect = 6e-17
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 9/112 (8%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLA 209
           G+  + +  G+    PK     +V+Y   LEDG        +    +F +          
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
           + V  M  G++  L + P Y +G  G       G +PP+ATL   +EL+  +
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATG---HP--GIIPPHATLVFDVELLKLE 107

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score =  195 bits (499), Expect = 2e-61
 Identities = 63/105 (60%), Positives = 75/105 (71%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
            L+KK++  G+G   P+ G +V VHY G   DG QFDSSR R  PF+FTLG G VIKGWD
Sbjct: 25  QLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWD 84

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
            G+ TM  GE A+FTIP +LAYGE G PP IPP ATL F+VELL+
Sbjct: 85  QGVATMTLGEKALFTIPYQLAYGERGYPPVIPPKATLVFEVELLA 129

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score = 93.1 bits (232), Expect = 7e-23
 Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 11/123 (8%)

Query: 261 KTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQL 317
           +T    +   ++ KK+L  GDG  +P  G  V V   G+  DG  F     +G     + 
Sbjct: 15  QTQGPGSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRG-----KP 69

Query: 318 FEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVE 377
           F+F     +VI G D+ V TM   E AL TI  + A+G         V+PP +T+ +EVE
Sbjct: 70  FQFTLGAGEVIKGWDQGVATMTLGEKALFTIPYQLAYGERGYP---PVIPPKATLVFEVE 126

Query: 378 LVS 380
           L++
Sbjct: 127 LLA 129

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score = 72.3 bits (178), Expect = 1e-15
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 9/112 (8%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPT 207
              + KK+L  G+    P+   +V V+Y+ R  DG        +    +FT+  G     
Sbjct: 23  SAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKG 82

Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
             + V TM  GEK L  +  Q  +GE+G         +PP ATL   +EL++
Sbjct: 83  WDQGVATMTLGEKALFTIPYQLAYGERG---YP--PVIPPKATLVFEVELLA 129

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score =  195 bits (498), Expect = 5e-61
 Identities = 62/136 (45%), Positives = 85/136 (62%), Gaps = 1/136 (0%)

Query: 9   AANEMDADMDLPDDAPMMKVGEEKEI-GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTL 67
             +E   + +    A + + GE+     ++G+ K + + G G +TP  GD+V VHY G L
Sbjct: 6   TTDEGAKNNEESPTATVAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL 65

Query: 68  LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPT 127
            +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE       PE AYG +GS P 
Sbjct: 66  SNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPK 125

Query: 128 IPPNATLQFDVELLSW 143
           IP NATL F++ELL +
Sbjct: 126 IPSNATLFFEIELLDF 141

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score = 98.9 bits (247), Expect = 8e-25
 Identities = 45/122 (36%), Positives = 63/122 (51%), Gaps = 11/122 (9%)

Query: 266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKT 322
              D+ V+K + + G+G E P  G  V V   GKL +G  F     +      + F F  
Sbjct: 31  SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRN-----EPFVFSL 85

Query: 323 DEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            + QVI   D  V TMKK E+  L   PEYA+GSA S   L  +P N+T+ +E+EL+ F+
Sbjct: 86  GKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFK 142

Query: 383 KE 384
            E
Sbjct: 143 GE 144

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score = 79.3 bits (196), Expect = 7e-18
 Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 9/115 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCP 206
           KD G++K + + G   E P   D+V V+Y+ +L +G        + +   F++  G    
Sbjct: 33  KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIK 92

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
                V TMKKGE   L  KP+Y +G  G   S     +P NATL   +EL+ +K
Sbjct: 93  AWDIGVATMKKGEICHLLCKPEYAYGSAG---SL--PKIPSNATLFFEIELLDFK 142

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score =  189 bits (482), Expect = 6e-59
 Identities = 53/129 (41%), Positives = 76/129 (58%), Gaps = 7/129 (5%)

Query: 26  MKVGEEKE----IGNQGLKKKLVKEGEGWD--TPENGDEVEVHYTGTLLD-GTQFDSSRD 78
           M   +E E      + G+ K ++K+G+  +   P+ G+EV VHY G L   G  FDSS D
Sbjct: 1   MTTEQEFEKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFD 60

Query: 79  RSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDV 138
           R+ PFKF L QG VIKGWDI + +M+K E  +  I     YG+ G   +IP N+ L F++
Sbjct: 61  RNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEI 120

Query: 139 ELLSWTSVK 147
           ELLS+  ++
Sbjct: 121 ELLSFRELE 129

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score = 92.7 bits (231), Expect = 1e-22
 Identities = 45/127 (35%), Positives = 66/127 (51%), Gaps = 14/127 (11%)

Query: 265 EITDDKKVIKKILKEGDGFER--PNEGAVVKVKLIGKLQD-GTVF---VKKGHSEEEQLF 318
           E+T D  VIK ILK+GD  E   P +G  V V  +GKL+  G VF     +        F
Sbjct: 11  ELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRN-----VPF 65

Query: 319 EFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
           +F  ++ +VI G D  V +M+KNE  L+ I   Y +G          +P NS + +E+EL
Sbjct: 66  KFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCG---ESIPGNSVLLFEIEL 122

Query: 379 VSFEKEK 385
           +SF + +
Sbjct: 123 LSFRELE 129

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score = 72.3 bits (178), Expect = 1e-15
 Identities = 39/124 (31%), Positives = 68/124 (54%), Gaps = 12/124 (9%)

Query: 147 KDICKDGGIIKKILKEGEKWE--NPKDLDEVLVNYEARLED-GMV----VGKADGVEFTV 199
            ++  DGG+IK ILK+G++ E   PK  +EV V+Y  +LE  G V      +    +F +
Sbjct: 10  VELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHL 69

Query: 200 KDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
           + G         V +M+K EK L+ ++  YG+G++G    G   ++P N+ L   +EL+S
Sbjct: 70  EQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEG---CG--ESIPGNSVLLFEIELLS 124

Query: 260 WKTV 263
           ++ +
Sbjct: 125 FREL 128

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score =  188 bits (479), Expect = 3e-58
 Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 4/128 (3%)

Query: 20  PDDAPMMKVGEEKEI--GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLD-GTQFDSS 76
           P  +   ++ +      G++G+ K +++EG G D       V V Y+G L      FDS+
Sbjct: 7   PGQSLYERLSQRMLDISGDRGVLKDVIREGAG-DLVAPDASVLVKYSGYLEHMDRPFDSN 65

Query: 77  RDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQF 136
             R TP    LG+   + G ++G+ +M++GE A F   P  AYG  G PP IPPN T+ F
Sbjct: 66  YFRKTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLF 125

Query: 137 DVELLSWT 144
           ++ELL + 
Sbjct: 126 EIELLDFL 133

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score =  102 bits (257), Expect = 2e-26
 Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 17/144 (11%)

Query: 242 EGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQ 301
           EG   P  +L   L     + + +I+ D+ V+K +++EG G +     A V VK  G L+
Sbjct: 2   EGDDAPGQSLYERLS----QRMLDISGDRGVLKDVIREGAG-DLVAPDASVLVKYSGYLE 56

Query: 302 D-GTVF---VKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSA 357
                F     +           K  E+  + G++  +++M++ E+A     P YA+G+ 
Sbjct: 57  HMDRPFDSNYFRK-----TPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTL 111

Query: 358 ESQQELAVVPPNSTVHYEVELVSF 381
                  ++PPN+TV +E+EL+ F
Sbjct: 112 GCP---PLIPPNTTVLFEIELLDF 132

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score = 76.1 bits (188), Expect = 8e-17
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 11/118 (9%)

Query: 148 DICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLED-GMV----VGKADGVEFTVKDG 202
           DI  D G++K +++EG   +       VLV Y   LE           +       + + 
Sbjct: 21  DISGDRGVLKDVIREGA-GDLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGED 79

Query: 203 HFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260
                +   + +M++GE      KP Y +G  G         +PPN T+   +EL+ +
Sbjct: 80  ITLWGMELGLLSMRRGELARFLFKPNYAYGTLG---CP--PLIPPNTTVLFEIELLDF 132

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score =  185 bits (472), Expect = 9e-58
 Identities = 51/103 (49%), Positives = 63/103 (61%), Gaps = 1/103 (0%)

Query: 47  GEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKG 106
           G        GD + +HYTG L DGT+FDSS  ++ PF F+LG G VIKGWD G+  M +G
Sbjct: 1   GSP-IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEG 59

Query: 107 ENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDI 149
           E     IP EL YGE G+PP IP  ATL F+VELL      ++
Sbjct: 60  EKRKLVIPSELGYGERGAPPKIPGGATLVFEVELLKIERRTEL 102

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score = 85.3 bits (212), Expect = 2e-20
 Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 280 GDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           G    +  +G V+ +   GKL+DGT F   + +      Q F F     QVI G D+ ++
Sbjct: 1   GSP-IKSRKGDVLHMHYTGKLEDGTEFDSSLPQN-----QPFVFSLGTGQVIKGWDQGLL 54

Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
            M + E   L I  E  +G   +      +P  +T+ +EVEL+  E+  E
Sbjct: 55  GMCEGEKRKLVIPSELGYGERGAP---PKIPGGATLVFEVELLKIERRTE 101

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score = 61.8 bits (151), Expect = 4e-12
 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 9/104 (8%)

Query: 167 ENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
              +  D + ++Y  +LEDG      + +     F++  G       + +  M +GEK  
Sbjct: 4   IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRK 63

Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
           L +  + G+GE+G   +     +P  ATL   +EL+  +  +E+
Sbjct: 64  LVIPSELGYGERG---AP--PKIPGGATLVFEVELLKIERRTEL 102

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  190 bits (484), Expect = 2e-56
 Identities = 76/264 (28%), Positives = 120/264 (45%), Gaps = 26/264 (9%)

Query: 216 KKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKK 275
              E  ++         E  +     EG VPP    +                D+KV K+
Sbjct: 12  HDQESEIVTEGSAVVHSEPSQ-----EGNVPPKVDSEA------------EVLDEKVSKQ 54

Query: 276 ILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKT-DEEQVIDGLDRA 334
           I+KEG G  +P++ +   +      ++     +    E++   E     E++ + GL   
Sbjct: 55  IIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQP-IELVLGKEKKELAGLAIG 112

Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV---SFEKEKESWDMN 391
           V +MK  E AL+ +  E A+G  E       VPP + + YEVE++     ++ K   DM 
Sbjct: 113 VASMKSGERALVHVGWELAYGK-EGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMT 171

Query: 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG--DEEKKQAKALKVA 449
            EE+I AA ++K  GN+LFK  K   A ++YE A+ Y+  D  F    + +  A A+K  
Sbjct: 172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNP 231

Query: 450 CNLNNAACKLKLKDYKQAEKLCTK 473
           C+LN AAC +KLK Y +A   C  
Sbjct: 232 CHLNIAACLIKLKRYDEAIGHCNI 255

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  123 bits (311), Expect = 9e-32
 Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 5/150 (3%)

Query: 2   DEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEV 61
            E   +   + +       +     KV  E E+ ++ + K+++KEG G   P       +
Sbjct: 14  QESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHG-SKPSKYSTCFL 72

Query: 62  HYTGTLLDGTQ-FDSSRDRSTPFKFTLGQ-GNVIKGWDIGIKTMKKGENAVFTIPPELAY 119
           HY     +    F+ +     P +  LG+    + G  IG+ +MK GE A+  +  ELAY
Sbjct: 73  HYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAY 132

Query: 120 GESGSPP--TIPPNATLQFDVELLSWTSVK 147
           G+ G+     +PP A L ++VE++ +   K
Sbjct: 133 GKEGNFSFPNVPPMADLLYEVEVIGFDETK 162

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 94.7 bits (235), Expect = 1e-21
 Identities = 34/174 (19%), Positives = 63/174 (36%), Gaps = 22/174 (12%)

Query: 104 KKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEG 163
              E+ + T    + + E      +PP    + +V             D  + K+I+KEG
Sbjct: 12  HDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVL------------DEKVSKQIIKEG 59

Query: 164 EKWENPKDLDEVLVNYEARLEDGMVV---GKADGVEFTV---KDGHFCPTLAKAVKTMKK 217
                P       ++Y A  ++          +     +   K+      LA  V +MK 
Sbjct: 60  H-GSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKS 118

Query: 218 GEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKK 271
           GE+ L+ V  +  +G++G  +      VPP A L   +E++ +    E      
Sbjct: 119 GERALVHVGWELAYGKEGNFS---FPNVPPMADLLYEVEVIGFDETKEGKARSD 169

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score =  182 bits (465), Expect = 2e-56
 Identities = 50/117 (42%), Positives = 66/117 (56%), Gaps = 8/117 (6%)

Query: 35  GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSS-------RDRSTPFKFTL 87
           G     K ++K+G+  + P+ GD V   YTGTL DGT FD++       +  + P  F +
Sbjct: 2   GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKV 61

Query: 88  GQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSP-PTIPPNATLQFDVELLSW 143
           G G VI+GWD  + TM KGE A   I PE AYG+ G P   IPPN  L F+VEL+  
Sbjct: 62  GVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI 118

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score =  100 bits (252), Expect = 9e-26
 Identities = 45/119 (37%), Positives = 59/119 (49%), Gaps = 7/119 (5%)

Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF-----VKKGHSEEEQLFEFKTD 323
             K  K ILK+GD    P +G VV     G L DGTVF           +  +   FK  
Sbjct: 3   PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVG 62

Query: 324 EEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
             +VI G D A++TM K E A L I PE+A+G        A +PPN+ + +EVELV  +
Sbjct: 63  VGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPD--AKIPPNTKLIFEVELVDID 119

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score = 72.7 bits (179), Expect = 8e-16
 Identities = 38/120 (31%), Positives = 52/120 (43%), Gaps = 15/120 (12%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV-----------VGKADGVEFTVK 200
                K ILK+G+K   PK  D V   Y   L DG V              A  + F V 
Sbjct: 3   PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVG 62

Query: 201 DGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260
            G       +A+ TM KGEK  L ++P++ +G+KG+        +PPN  L   +ELV  
Sbjct: 63  VGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPD----AKIPPNTKLIFEVELVDI 118

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score =  180 bits (460), Expect = 2e-55
 Identities = 44/129 (34%), Positives = 60/129 (46%), Gaps = 8/129 (6%)

Query: 29  GEEKE--IGNQGLKKKLVKEG-EGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKF 85
           GEE    +GN  L+KK +  G  G   P  G  V VH   +L +GT+            F
Sbjct: 7   GEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEP----ELVF 62

Query: 86  TLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS-PPTIPPNATLQFDVELLSWT 144
           TLG  +VI+  D+ +  M  GE A+ T   +  YG  GS  P IPP+A L  +V L +  
Sbjct: 63  TLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAV 122

Query: 145 SVKDICKDG 153
              D+   G
Sbjct: 123 DRPDLEMSG 131

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score =  117 bits (294), Expect = 1e-31
 Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 9/123 (7%)

Query: 265 EITDDKKVIKKILKEG-DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
           +I  +  + KK L  G  G  RP +G VV V L   L++GT        +EE    F   
Sbjct: 12  DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRV------QEEPELVFTLG 65

Query: 324 EEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383
           +  VI  LD +V  M   E A++T   +Y +G   S+     +PP++ +  EV L +   
Sbjct: 66  DCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRS--PYIPPHAALCLEVTLKTAVD 123

Query: 384 EKE 386
             +
Sbjct: 124 RPD 126

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score =  100 bits (250), Expect = 2e-25
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 5/123 (4%)

Query: 148 DICKDGGIIKKILKEG-EKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
           DI  +G + KK L  G      P     V V+ +  LE+G  V +   + FT+ D     
Sbjct: 12  DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQ 71

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
            L  +V  M  GE  ++    +Y +G +G         +PP+A L + + L +     ++
Sbjct: 72  ALDLSVPLMDVGETAMVTADSKYCYGPQG----SRSPYIPPHAALCLEVTLKTAVDRPDL 127

Query: 267 TDD 269
              
Sbjct: 128 EMS 130

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score =  180 bits (458), Expect = 2e-55
 Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 5/111 (4%)

Query: 35  GNQGLKKKLVKEGEG-WDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVI 93
           GN  L+KK +  G      P  G  V VH   +L +GT+            FTLG  +VI
Sbjct: 11  GNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEP----ELVFTLGDCDVI 66

Query: 94  KGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWT 144
           +  D+ +  M  GE A+ T   +  YG  G  P IPP+A L  +V L +  
Sbjct: 67  QALDLSVPLMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV 117

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score =  110 bits (278), Expect = 2e-29
 Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 10/119 (8%)

Query: 265 EITDDKKVIKKILKEGDG-FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
           +I  +  + KK L  G     RP +G VV V L   L++GT        +EE    F   
Sbjct: 8   DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRV------QEEPELVFTLG 61

Query: 324 EEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           +  VI  LD +V  M   E A++T   +Y +G          +PP++ +  EV L +  
Sbjct: 62  DCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRS---PYIPPHAALCLEVTLKTAV 117

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score = 98.1 bits (245), Expect = 7e-25
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 6/115 (5%)

Query: 148 DICKDGGIIKKILKEGE-KWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
           DI  +G + KK L  G      P     V V+ +  LE+G  V +   + FT+ D     
Sbjct: 8   DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQ 67

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
            L  +V  M  GE  ++    +Y +G +G+        +PP+A L + + L +  
Sbjct: 68  ALDLSVPLMDVGETAMVTADSKYCYGPQGR-----SPYIPPHAALCLEVTLKTAV 117

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score =  180 bits (458), Expect = 3e-55
 Identities = 58/105 (55%), Positives = 68/105 (64%), Gaps = 1/105 (0%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GLK + + EG G      G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD
Sbjct: 29  GLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWD 87

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
            G++ MK G     TIPP+L YG  G+   IPPNATL F+VELL 
Sbjct: 88  EGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLD 132

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score = 82.3 bits (204), Expect = 5e-19
 Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 12/123 (9%)

Query: 261 KTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQL 317
             ++ +T +  +  + L EG G      G  V V   G L DG  F     +        
Sbjct: 19  SHMTVVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRN-----DP 72

Query: 318 FEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVE 377
           F F      VI G D  V  MK   V  LTI P+  +G+  +     V+PPN+T+ +EVE
Sbjct: 73  FAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVE 129

Query: 378 LVS 380
           L+ 
Sbjct: 130 LLD 132

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score = 61.9 bits (151), Expect = 8e-12
 Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 10/112 (8%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPT 207
           + G+  + L EG      +    V V+Y   L DG        + D   F +  G     
Sbjct: 27  ESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKG 85

Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
             + V+ MK G    L + PQ G+G +G   +G  G +PPNATL   +EL+ 
Sbjct: 86  WDEGVQGMKVGGVRRLTIPPQLGYGARG---AG--GVIPPNATLVFEVELLD 132

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score =  176 bits (449), Expect = 2e-53
 Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 5/153 (3%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
             E   +   + +       +     KV  E E+ ++ + K+++KEG G   P       
Sbjct: 13  DQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHG-SKPSKYSTCF 71

Query: 61  VHYTGTLLDGT-QFDSSRDRSTPFKFTLG-QGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
           +HY     +   +F+ +     P +  LG +   + G  IG+ +MK GE A+  +  ELA
Sbjct: 72  LHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELA 131

Query: 119 YGESG--SPPTIPPNATLQFDVELLSWTSVKDI 149
           YG+ G  S P +PP A L ++VE++ +   K+ 
Sbjct: 132 YGKEGNFSFPNVPPMADLLYEVEVIGFDETKEG 164

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score =  109 bits (274), Expect = 4e-28
 Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 15/141 (10%)

Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGT-VF---VKKGHSEEEQLFEFK- 321
             D+KV K+I+KEG G  +P++ +   +      ++    F     +      Q  E   
Sbjct: 46  VLDEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQ-----QPIELVL 99

Query: 322 TDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
             E++ + GL   V +MK  E AL+ +  E A+G  E       VPP + + YEVE++ F
Sbjct: 100 GKEKKELAGLAIGVASMKSGERALVHVGWELAYG-KEGNFSFPNVPPMADLLYEVEVIGF 158

Query: 382 EKEKES---WDMNTEEKIEAA 399
           ++ KE     DM  EE+I AA
Sbjct: 159 DETKEGKARSDMTVEERIGAA 179

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score = 86.4 bits (214), Expect = 5e-20
 Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 22/174 (12%)

Query: 101 KTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKIL 160
                 E+ + T    + + E      +PP    + +V             D  + K+I+
Sbjct: 9   TQTHDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEV------------LDEKVSKQII 56

Query: 161 KEGEKWENPKDLDEVLVNYEARLEDGMVV-----GKADGVEFTV-KDGHFCPTLAKAVKT 214
           KEG     P       ++Y A  ++          +   +E  + K+      LA  V +
Sbjct: 57  KEGH-GSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVAS 115

Query: 215 MKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITD 268
           MK GE+ L+ V  +  +G++G   + +   VPP A L   +E++ +    E   
Sbjct: 116 MKSGERALVHVGWELAYGKEG---NFSFPNVPPMADLLYEVEVIGFDETKEGKA 166

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score =  175 bits (446), Expect = 2e-52
 Identities = 61/128 (47%), Positives = 73/128 (57%), Gaps = 1/128 (0%)

Query: 15  ADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFD 74
            D D+ +       G        GLK + + EG G      G  V VHYTG L DG +FD
Sbjct: 82  EDNDIIEAHREQIGGSTVVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFD 140

Query: 75  SSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATL 134
           SS+DR+ PF F LG G VIKGWD G++ MK G     TIPP+L YG  G+   IPPNATL
Sbjct: 141 SSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAAGVIPPNATL 200

Query: 135 QFDVELLS 142
            F+VELL 
Sbjct: 201 VFEVELLD 208

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 86.4 bits (214), Expect = 1e-19
 Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 14/168 (8%)

Query: 216 KKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKK 275
           K+  K + +++  Y         +  +  +  N  ++   E +   TV  +T +  +  +
Sbjct: 52  KRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGSTV--VTTESGLKYE 109

Query: 276 ILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGLD 332
            L EG G      G  V V   G L DG  F     +        F F      VI G D
Sbjct: 110 DLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRN-----DPFAFVLGGGMVIKGWD 163

Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
             V  MK   V  LTI P+  +G+  +     V+PPN+T+ +EVEL+ 
Sbjct: 164 EGVQGMKVGGVRRLTIPPQLGYGARGAA---GVIPPNATLVFEVELLD 208

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 74.9 bits (184), Expect = 1e-15
 Identities = 38/187 (20%), Positives = 68/187 (36%), Gaps = 11/187 (5%)

Query: 78  DRSTPFKFTLGQGNVIKGWDIGIKTM-KKGENAVFTIPPELAYGESGSPPTIPPNATLQF 136
           D S+   F + +   ++           K  +++  +   +      +P  +        
Sbjct: 28  DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDII 87

Query: 137 DVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKA 192
           +           +  + G+  + L EG   E  +    V V+Y   L DG        + 
Sbjct: 88  EAHREQIGGSTVVTTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKFDSSKDRN 146

Query: 193 DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQ 252
           D   F +  G       + V+ MK G    L + PQ G+G +G +     G +PPNATL 
Sbjct: 147 DPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAA-----GVIPPNATLV 201

Query: 253 IALELVS 259
             +EL+ 
Sbjct: 202 FEVELLD 208

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score =  173 bits (439), Expect = 4e-52
 Identities = 42/140 (30%), Positives = 60/140 (42%), Gaps = 6/140 (4%)

Query: 10  ANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEG-WDTPENGDEVEVHYTGTLL 68
           A E  A M+               +GN  L+KK +  G      P  G  V VH   +L 
Sbjct: 16  AREFLAAMEPEPAPAPAPEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLE 75

Query: 69  DGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS-PPT 127
           +GT+            FTLG  +VI+  D+ +  M  GE A+ T   +  YG  GS  P 
Sbjct: 76  NGTRVQEEP----ELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPY 131

Query: 128 IPPNATLQFDVELLSWTSVK 147
           IPP+A L  +V L +   ++
Sbjct: 132 IPPHAALCLEVTLKTAVDLE 151

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score =  112 bits (281), Expect = 2e-29
 Identities = 43/170 (25%), Positives = 67/170 (39%), Gaps = 14/170 (8%)

Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEG-D 281
           +   P     + G  A     A+ P      A E        +I  +  + KK L  G  
Sbjct: 1   MGQPPAEEAEQPGALAREFLAAMEPEPAPAPAPE-----EWLDILGNGLLRKKTLVPGPP 55

Query: 282 GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKN 341
           G  RP +G VV V L   L++GT        +EE    F   +  VI  LD +V  M   
Sbjct: 56  GSSRPVKGQVVTVHLQTSLENGTRV------QEEPELVFTLGDCDVIQALDLSVPLMDVG 109

Query: 342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMN 391
           E A++T   +Y +G   S+     +PP++ +  EV L +    +     +
Sbjct: 110 ETAMVTADSKYCYGPQGSRS--PYIPPHAALCLEVTLKTAVDLEHHHHHH 157

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score = 92.5 bits (230), Expect = 2e-22
 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 5/119 (4%)

Query: 148 DICKDGGIIKKILKEG-EKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
           DI  +G + KK L  G      P     V V+ +  LE+G  V +   + FT+ D     
Sbjct: 38  DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQ 97

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSE 265
            L  +V  M  GE  ++    +Y +G +G         +PP+A L + + L +   +  
Sbjct: 98  ALDLSVPLMDVGETAMVTADSKYCYGPQG----SRSPYIPPHAALCLEVTLKTAVDLEH 152

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score =  172 bits (438), Expect = 7e-52
 Identities = 57/148 (38%), Positives = 78/148 (52%), Gaps = 19/148 (12%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL  + +  G G   P   D+ EVHYTG L DGT FDSSR+R  P  F   +  VIKGW 
Sbjct: 38  GLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPNE--VIKGWT 95

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIK 157
             ++ M++G+     IP +LAYG +G    IPP + L+FDVEL+S               
Sbjct: 96  EALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELIS--------------- 140

Query: 158 KILKEGEKWENPKDLDEVLVNYEARLED 185
             +K+G K    +++DE+L   E   ED
Sbjct: 141 --IKDGGKGRTAEEVDEILRKAEEDRED 166

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score = 75.1 bits (185), Expect = 3e-16
 Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 13/134 (9%)

Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGL 331
           + +  G G   P      +V   G+L+DGTVF    ++G     +   F+ +  +VI G 
Sbjct: 42  QRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERG-----KPTTFRPN--EVIKGW 94

Query: 332 DRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMN 391
             A+  M++ +   L I  + A+G         ++PP S + ++VEL+S +   +     
Sbjct: 95  TEALQLMREGDRWRLFIPYDLAYGVTGGG---GMIPPYSPLEFDVELISIKDGGKGRTAE 151

Query: 392 TEEKIEAAGKKKEQ 405
             ++I    ++  +
Sbjct: 152 EVDEILRKAEEDRE 165

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score = 62.8 bits (153), Expect = 6e-12
 Identities = 27/136 (19%), Positives = 56/136 (41%), Gaps = 17/136 (12%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLA 209
           G++ + +  G     P   D+  V+Y  RL DG V      +     F            
Sbjct: 38  GLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRP--NEVIKGWT 95

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS------WKTV 263
           +A++ M++G++  L +     +G  G       G +PP + L+  +EL+S       +T 
Sbjct: 96  EALQLMREGDRWRLFIPYDLAYGVTGGG-----GMIPPYSPLEFDVELISIKDGGKGRTA 150

Query: 264 SEITDDKKVIKKILKE 279
            E+ +  +  ++  ++
Sbjct: 151 EEVDEILRKAEEDRED 166

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score =  169 bits (429), Expect = 4e-51
 Identities = 46/128 (35%), Positives = 56/128 (43%), Gaps = 12/128 (9%)

Query: 27  KVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
               E  +   GL       G G      G  ++ HY G L +G  FDSS +R  P  F 
Sbjct: 2   TTSCEFSVSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFR 60

Query: 87  LGQGNVIKGWDIGI------KTMKKGENAVFTIPPELAYGESG-----SPPTIPPNATLQ 135
           +G G VIKGWD GI        M  G      IPPELAYG+ G         IPP + L 
Sbjct: 61  IGVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLL 120

Query: 136 FDVELLSW 143
           FD+E +  
Sbjct: 121 FDIEYIGK 128

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score = 80.9 bits (200), Expect = 1e-18
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 17/120 (14%)

Query: 272 VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVI 328
           +       G G     +G ++K   +GKL++G VF     +G     +   F+    +VI
Sbjct: 14  LAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRG-----KPLTFRIGVGEVI 67

Query: 329 DGLDRAVI------TMKKNEVALLTIAPEYAFGS--AESQQELAVVPPNSTVHYEVELVS 380
            G D+ ++       M       L I PE A+G   A  +    ++PP S + +++E + 
Sbjct: 68  KGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIG 127

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score = 66.2 bits (162), Expect = 2e-13
 Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 11/119 (9%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCP- 206
             G+       G           +  +Y  +LE+G V      +   + F +  G     
Sbjct: 11  PSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKG 69

Query: 207 -----TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260
                  +  +  M  G K  L + P+  +G++G    G    +PP + L   +E +  
Sbjct: 70  WDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK 128

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score =  162 bits (413), Expect = 8e-49
 Identities = 41/109 (37%), Positives = 59/109 (54%), Gaps = 5/109 (4%)

Query: 38  GLKKKLVKEGEGW-DTPENGDEVEVHYTGTL-LDGTQFDSS--RDRSTPFKFTLGQGNVI 93
            +K +++++        + GD + VHY G L  DG+ F S+   +   P  FTLG    +
Sbjct: 13  EVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEAL 72

Query: 94  KGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
           KGWD G+K M  GE     IPP L YG+ G    IPP +TL F+++LL 
Sbjct: 73  KGWDQGLKGMCVGEKRKLIIPPALGYGKEGKGK-IPPESTLIFNIDLLE 120

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score = 77.7 bits (192), Expect = 2e-17
 Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 6/126 (4%)

Query: 260 WKTVSEITDDKKVIKKILKEGDGFER-PNEGAVVKVKLIGKLQ-DGTVFVKKGHSEEEQL 317
           ++++  +  + +V  ++L++     R    G ++ V   G L+ DG++F         Q 
Sbjct: 2   FQSMGALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQP 61

Query: 318 FEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVE 377
             F     + + G D+ +  M   E   L I P   +G     +    +PP ST+ + ++
Sbjct: 62  IWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPALGYGK----EGKGKIPPESTLIFNID 117

Query: 378 LVSFEK 383
           L+    
Sbjct: 118 LLEIRN 123

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score = 56.9 bits (138), Expect = 3e-10
 Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 14/129 (10%)

Query: 143 WTSVKDICKDGGIIKKILKEGEKW-ENPKDLDEVLVNYEARLE-DGMV----VGKADG-- 194
           + S+  +  +  +  ++L++        K  D +LV+YE  LE DG +        +G  
Sbjct: 2   FQSMGALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQP 61

Query: 195 VEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIA 254
           + FT+          + +K M  GEK  L + P  G+G++GK      G +PP +TL   
Sbjct: 62  IWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPALGYGKEGK------GKIPPESTLIFN 115

Query: 255 LELVSWKTV 263
           ++L+  +  
Sbjct: 116 IDLLEIRNG 124

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score =  142 bits (359), Expect = 1e-39
 Identities = 41/105 (39%), Positives = 52/105 (49%), Gaps = 3/105 (2%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL+ K++  G G   P   D V V YTG L+DGT FDS+     P  F + Q  VI GW 
Sbjct: 107 GLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQ--VIPGWT 163

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
             ++ M  G      +P  LAYG       I PN TL F + L+S
Sbjct: 164 EALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLIS 208

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score = 71.6 bits (176), Expect = 2e-14
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 14/112 (12%)

Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGL 331
           K++  G+G  +P +   V V+  G+L DGTVF    K G     +   F+    QVI G 
Sbjct: 111 KVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTG-----KPATFQVS--QVIPGW 162

Query: 332 DRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383
             A+  M       + +    A+G          + PN T+ +++ L+S +K
Sbjct: 163 TEALQLMPAGSTWEIYVPSGLAYGPRSVG---GPIGPNETLIFKIHLISVKK 211

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 27/106 (25%), Positives = 38/106 (35%), Gaps = 12/106 (11%)

Query: 158 KILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLAKAVK 213
           K++  G     P   D V V Y  RL DG V            F V      P   +A++
Sbjct: 111 KVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGWTEALQ 167

Query: 214 TMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
            M  G    + V     +G +        G + PN TL   + L+S
Sbjct: 168 LMPAGSTWEIYVPSGLAYGPRSVG-----GPIGPNETLIFKIHLIS 208

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score =  137 bits (348), Expect = 5e-38
 Identities = 53/105 (50%), Positives = 69/105 (65%), Gaps = 4/105 (3%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL  ++V+ G+G + P++ D V V+Y GTL+DG +FD+S  R  P  F L    VI GW 
Sbjct: 122 GLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIPGWT 178

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
            G+K +KKG      IPPELAYG++G P  IPPN+TL FDVELL 
Sbjct: 179 EGLKNIKKGGKIKLVIPPELAYGKAGVPG-IPPNSTLVFDVELLD 222

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score = 67.9 bits (166), Expect = 3e-13
 Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 15/111 (13%)

Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGL 331
           ++++ G G E P +   V V   G L DG  F     +G     +   F+ D   VI G 
Sbjct: 126 QVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRG-----EPLSFRLD--GVIPGW 177

Query: 332 DRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
              +  +KK     L I PE A+G A        +PPNST+ ++VEL+  +
Sbjct: 178 TEGLKNIKKGGKIKLVIPPELAYGKAGVPG----IPPNSTLVFDVELLDVK 224

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 13/112 (11%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLA 209
           G++ ++++ G+  E PKD D V+VNY+  L DG        + + + F +      P   
Sbjct: 122 GLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWT 178

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
           + +K +KKG K+ L + P+  +G+ G         +PPN+TL   +EL+  K
Sbjct: 179 EGLKNIKKGGKIKLVIPPELAYGKAGV------PGIPPNSTLVFDVELLDVK 224

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score =  136 bits (344), Expect = 1e-37
 Identities = 36/105 (34%), Positives = 47/105 (44%), Gaps = 6/105 (5%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           G+    +  G G   P+    VEV Y G L DG  FD S     P  F L    VI GW 
Sbjct: 118 GILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQSTQ---PQWFRLDS--VISGWT 171

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
             ++ M  G      IP + AYG  G+   I P   L F++EL++
Sbjct: 172 SALQNMPTGAKWRLVIPSDQAYGAEGAGDLIDPFTPLVFEIELIA 216

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score = 72.1 bits (177), Expect = 1e-14
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 11/109 (10%)

Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRA 334
             L  G G  +P+    V+V+ +G+L DG +F +       Q   F+ D   VI G   A
Sbjct: 122 TELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQST-----QPQWFRLD--SVISGWTSA 173

Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383
           +  M       L I  + A+G+   +    ++ P + + +E+EL++  +
Sbjct: 174 LQNMPTGAKWRLVIPSDQAYGA---EGAGDLIDPFTPLVFEIELIAVSQ 219

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score = 55.5 bits (134), Expect = 5e-09
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 9/107 (8%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA-DGVEFTVKDGHFCPTLAKAV 212
           GI+   L  G     P     V V Y  RL DG +  ++     F +           A+
Sbjct: 118 GILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQSTQPQWFRL--DSVISGWTSAL 174

Query: 213 KTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
           + M  G K  L +     +G +G         + P   L   +EL++
Sbjct: 175 QNMPTGAKWRLVIPSDQAYGAEGAG-----DLIDPFTPLVFEIELIA 216

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  121 bits (306), Expect = 2e-32
 Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 2/113 (1%)

Query: 363 LAVVPPNSTVHYEVELVSFEK-EKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKR 421
           +     +       E + F+  +K  +D   EEK+++A   KE+GN  FK  +   A  +
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVK 60

Query: 422 YEKAVKYIEYDTSFGDEEK-KQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473
           Y++A+ +  +   + D+    + K ++++CNLN A C  K KDY +A    +K
Sbjct: 61  YKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK 113

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  106 bits (266), Expect = 3e-27
 Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY---DTSFGDEEKKQAKAL 446
              ++K+++    +++GN LF    Y  A   Y  A+  ++        G+ E  +    
Sbjct: 2   NAEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK 61

Query: 447 KVACNLNNAACKLKLKDYKQAEKLCTK 473
            +    N + C L + D  +AE+  ++
Sbjct: 62  NIPLYANMSQCYLNIGDLHEAEETSSE 88

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 88.6 bits (220), Expect = 2e-19
 Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 1/101 (0%)

Query: 374 YEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT 433
                  F ++ +    + ++ +  +   K  GNT FK+  +  A K+Y K ++Y+E   
Sbjct: 198 SGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR 257

Query: 434 SFGDEEKKQA-KALKVACNLNNAACKLKLKDYKQAEKLCTK 473
           +  ++      + + ++C LN  ACKLK+ D++ A   C +
Sbjct: 258 AAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE 298

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 83.5 bits (207), Expect = 4e-19
 Identities = 21/68 (30%), Positives = 38/68 (55%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
           ++   V VH+T  L DGT  +S+R+   P  F LG  ++ +G +  +  +K G+   F++
Sbjct: 26  QSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSL 85

Query: 114 PPELAYGE 121
            P+ A+G 
Sbjct: 86  EPDAAFGV 93

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 288 EGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT 347
             + V V    KL DGT           +   F+  +  + +GL++ ++ +K  +    +
Sbjct: 27  SNSAVLVHFTLKLDDGTTAEST--RNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFS 84

Query: 348 IAPEYAFG 355
           + P+ AFG
Sbjct: 85  LEPDAAFG 92

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 173 DEVLVNYEARLEDGMVV----GKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQ 228
             VLV++  +L+DG              F + D      L + +  +K G+K   +++P 
Sbjct: 29  SAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPD 88

Query: 229 YGFGE 233
             FG 
Sbjct: 89  AAFGV 93

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 74.7 bits (184), Expect = 3e-16
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 12/85 (14%)

Query: 389 DMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKV 448
                    +  + +++GN LFK G Y  A   Y +A   +  D +  D         + 
Sbjct: 18  PRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQA---LGLDATPQD---------QA 65

Query: 449 ACNLNNAACKLKLKDYKQAEKLCTK 473
             + N AAC LKL+DY +AE   +K
Sbjct: 66  VLHRNRAACHLKLEDYDKAETEASK 90

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Length = 151

 Score = 74.7 bits (184), Expect = 3e-16
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 13/81 (16%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRST-------------PFKFTLGQGNVIKGWDIGI 100
           + G +++V Y G L  G  FD+S +                P +F +G+G +I+G++  +
Sbjct: 3   DKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAV 62

Query: 101 KTMKKGENAVFTIPPELAYGE 121
             M+ G+     IP E AYG 
Sbjct: 63  LDMEVGDEKTVKIPAEKAYGN 83

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Length = 151

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 11/79 (13%)

Query: 288 EGAVVKVKLIGKLQDGTVF-----------VKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +G  +KV  IGKL+ G VF                  E +  EF   E Q+I G + AV+
Sbjct: 4   KGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVL 63

Query: 337 TMKKNEVALLTIAPEYAFG 355
            M+  +   + I  E A+G
Sbjct: 64  DMEVGDEKTVKIPAEKAYG 82

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171

 Score = 75.0 bits (185), Expect = 4e-16
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
                V + Y     DG   D S     P  +  G G++I G +  ++  + G+     +
Sbjct: 4   AKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDVAV 62

Query: 114 PPELAYGE 121
               AYG+
Sbjct: 63  GANDAYGQ 70

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 288 EGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT 347
           +  VV +    + +DG +  +   S      ++      +I GL+ A+   +  +   + 
Sbjct: 5   KDLVVSLAYQVRTEDGVLVDE---SPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVA 61

Query: 348 IAPEYAFG 355
           +    A+G
Sbjct: 62  VGANDAYG 69

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 173 DEVLVNYEARLEDGMVVGKADG---VEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQY 229
             V + Y+ R EDG++V ++     +++    G     L  A++  + G+K  +AV    
Sbjct: 7   LVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGAND 66

Query: 230 GFGE 233
            +G+
Sbjct: 67  AYGQ 70

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196

 Score = 74.0 bits (182), Expect = 2e-15
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
                V + Y     DG   D S     P  +  G G++I G +  ++  + G+     +
Sbjct: 4   AKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDVAV 62

Query: 114 PPELAYGE 121
               AYG+
Sbjct: 63  GANDAYGQ 70

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 288 EGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT 347
           +  VV +    + +DG +  +   S      ++      +I GL+ A+   +  +   + 
Sbjct: 5   KDLVVSLAYQVRTEDGVLVDE---SPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVA 61

Query: 348 IAPEYAFG 355
           +    A+G
Sbjct: 62  VGANDAYG 69

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 173 DEVLVNYEARLEDGMVVGKADG---VEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQY 229
             V + Y+ R EDG++V ++     +++    G     L  A++  + G+K  +AV    
Sbjct: 7   LVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGAND 66

Query: 230 GFGE 233
            +G+
Sbjct: 67  AYGQ 70

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Length = 151

 Score = 70.7 bits (174), Expect = 9e-15
 Identities = 16/74 (21%), Positives = 25/74 (33%)

Query: 48  EGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGE 107
           +  D         + Y       +    S     P +F +G   +I G +  +   + GE
Sbjct: 2   QNHDLESIKQAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGE 61

Query: 108 NAVFTIPPELAYGE 121
                I PE AYG 
Sbjct: 62  WEEVVIAPEEAYGV 75

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Length = 151

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 287 NEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL 346
           +      ++   + Q  ++ +    +  ++  EF     Q+I GL++AV+  +  E   +
Sbjct: 8   SIKQAALIEYEVREQGSSIVLDS--NISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEV 65

Query: 347 TIAPEYAFG 355
            IAPE A+G
Sbjct: 66  VIAPEEAYG 74

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} PDB: 3pra_A Length = 157

 Score = 69.3 bits (170), Expect = 3e-14
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 14/81 (17%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDR-------------STPFKFTLGQGNVIKGWDIGI 100
           E G  V++ Y G + DG  FD++ +                P     G+G V+ G D  I
Sbjct: 3   EKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAI 61

Query: 101 KTMKKGENAVFTIPPELAYGE 121
             M  GE     +PPE A+G+
Sbjct: 62  LEMDVGEEREVVLPPEKAFGK 82

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A* Length = 158

 Score = 66.5 bits (163), Expect = 3e-13
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
                V + YT  + +G   D          +  G  N+I G +  ++  ++GE     +
Sbjct: 4   GQDKVVTIRYTLQV-EGEVLDQG-----ELSYLHGHRNLIPGLEEALEGREEGEAFQAHV 57

Query: 114 PPELAYGE 121
           P E AYG 
Sbjct: 58  PAEKAYGP 65

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A Length = 231

 Score = 65.2 bits (159), Expect = 4e-12
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 14/81 (17%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDR-------------STPFKFTLGQGNVIKGWDIGI 100
           E G  V++ Y G + DG  FD++ +                P     G+G V+ G D  I
Sbjct: 3   EKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAI 61

Query: 101 KTMKKGENAVFTIPPELAYGE 121
             M  GE     +PPE A+G+
Sbjct: 62  LEMDVGEEREVVLPPEKAFGK 82

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 15/84 (17%)

Query: 390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVA 449
           + +EE    A + K +GN   K   +  A   Y KA   IE + +        A      
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKA---IELNPAN-------AVYF--- 49

Query: 450 CNLNNAACKLKLKDYKQAEKLCTK 473
              N AA   KL +Y  A + C +
Sbjct: 50  --CNRAAAYSKLGNYAGAVQDCER 71

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 54.7 bits (132), Expect = 4e-09
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 15/82 (18%)

Query: 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACN 451
            +  ++ A + K Q N  FKA  Y  A K Y +A   IE +          A        
Sbjct: 6   ADGALKRAEELKTQANDYFKAKDYENAIKFYSQA---IELN-------PSNAIYYG---- 51

Query: 452 LNNAACKLKLKDYKQAEKLCTK 473
            N +   L+ + Y  A    T+
Sbjct: 52  -NRSLAYLRTECYGYALGDATR 72

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 53.4 bits (129), Expect = 6e-09
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 385 KESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAK 444
                 ++    + A   K +GN  F+ G Y +A K Y +A   I+ +        K AK
Sbjct: 2   GHHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEA---IKRN-------PKDAK 51

Query: 445 ALKVACNLNNAACKLKLKDYKQAEKLCTK 473
                   N AAC  KL +++ A K C +
Sbjct: 52  LYS-----NRAACYTKLLEFQLALKDCEE 75

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 53.0 bits (128), Expect = 8e-09
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 15/77 (19%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA 456
           E A ++K +GN  FK G Y  A + Y +A   ++ D        + A         N AA
Sbjct: 11  ELAQEEKNKGNEYFKKGDYPTAMRHYNEA---VKRD-------PENAILYS-----NRAA 55

Query: 457 CKLKLKDYKQAEKLCTK 473
           C  KL ++++A   C  
Sbjct: 56  CLTKLMEFQRALDDCDT 72

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 15/81 (18%)

Query: 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNL 452
             K  +A + KEQGN LF   KY  A+  Y +A   I  +          A         
Sbjct: 3   HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRA---ITRN-------PLVAVYYT----- 47

Query: 453 NNAACKLKLKDYKQAEKLCTK 473
           N A C LK++  +QA   C +
Sbjct: 48  NRALCYLKMQQPEQALADCRR 68

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 15/78 (19%)

Query: 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNA 455
           +    K+KEQGN+LFK G Y  A   Y++    I           +           N A
Sbjct: 1   MSQFEKQKEQGNSLFKQGLYREAVHCYDQL---ITAQ-------PQNPVGYS-----NKA 45

Query: 456 ACKLKLKDYKQAEKLCTK 473
              +KL +Y QA ++C +
Sbjct: 46  MALIKLGEYTQAIQMCQQ 63

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 17/83 (20%)

Query: 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACN 451
           +    +AA  +K+ GN  +K   + +A   Y+KA++    + +F                
Sbjct: 1   SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITF---------------- 44

Query: 452 LNN-AACKLKLKDYKQAEKLCTK 473
            NN AA   + K + +  + C K
Sbjct: 45  YNNKAAVYFEEKKFAECVQFCEK 67

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 15/78 (19%)

Query: 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNA 455
           +E   + KE+GN     G    A + Y +A   I+ D                    N +
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEA---IKLD-------PHNHVLYS-----NRS 45

Query: 456 ACKLKLKDYKQAEKLCTK 473
           A   K  DY++A +   K
Sbjct: 46  AAYAKKGDYQKAYEDGCK 63

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 17/78 (21%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN-A 455
           + A K+KE GN  +K   +  A K Y+KA +    + ++                + N A
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTY----------------ITNQA 45

Query: 456 ACKLKLKDYKQAEKLCTK 473
           A   +  DY +  +LC K
Sbjct: 46  AVYFEKGDYNKCRELCEK 63

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 50.4 bits (121), Expect = 6e-08
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 15/75 (20%)

Query: 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK 458
           A + + +G   F    +  A K Y +    I+          + A+        N AA  
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEM---IKRA-------PEDARGYS-----NRAAAL 48

Query: 459 LKLKDYKQAEKLCTK 473
            KL  + +A   C K
Sbjct: 49  AKLMSFPEAIADCNK 63

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 8e-08
 Identities = 92/624 (14%), Positives = 165/624 (26%), Gaps = 200/624 (32%)

Query: 4   DFDIPAANEMD---------------ADMDLPDDAPMMK-VGEEKEIGNQGLKKKLVKEG 47
           DF+     E                  + D  D   M K +  ++EI        ++   
Sbjct: 8   DFET---GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI------DHIIMSK 58

Query: 48  EG--------W---DTPEN------GDEVEVHYT-----------GTLLDGTQFDSSRDR 79
           +         W      E        + + ++Y               +    +   RDR
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118

Query: 80  --STPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPE---LAYGESGSPPTIPPNATL 134
             +    F   + NV +     ++   K   A+  + P    L  G  GS  T       
Sbjct: 119 LYNDNQVFA--KYNVSR-----LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171

Query: 135 QFDVELLS-------WTSVKDICKDGGIIKKILK-----------EGEKWENPK----DL 172
               ++         W ++K+      +++ + K             +   N K     +
Sbjct: 172 L-SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 173 DEVLVNY--EARLEDGMVVGKADGVE-------FTVKDGHFCPTLAKAVKTMKKG----- 218
              L         E+ ++V     V+       F +     C  L   + T  K      
Sbjct: 231 QAELRRLLKSKPYENCLLV--LLNVQNAKAWNAFNLS----CKIL---LTTRFKQVTDFL 281

Query: 219 ----EKVLLAVKPQYGFGEK------GKSASGNEGAVPPNAT----LQIAL--ELVS--- 259
                  +                   K        +P         ++++  E +    
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341

Query: 260 --WKTVSEITDDK--KVIKKILKEGDGFERPNEG-------AV----VKV--KLIGKL-- 300
             W     +  DK   +I+  L   +    P E        +V      +   L+  +  
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLE----PAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397

Query: 301 ----QDGTVFVKKGHSE---EEQLFEFKTDEEQVIDGLDRAVITMKKNEVAL-LTIAPEY 352
                D  V V K H     E+Q  E        I  +   +    +NE AL  +I   Y
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTI----SIPSIYLELKVKLENEYALHRSIVDHY 453

Query: 353 AFGSAESQQELAVVPPNSTV------HYEVELVSFEKEKESWDMNT---------EEKIE 397
                    +L     +         H    L + E   E   +           E+KI 
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHH----LKNIEHP-ERMTLFRMVFLDFRFLEQKIR 508

Query: 398 AAG----KKKEQGNTLFKAGKY----ARASKRYEKAVKYIEYDTSFGDEEK----KQAKA 445
                        NTL +   Y         +YE+ V  I  D     EE     K    
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL-DFLPKIEENLICSKYTDL 567

Query: 446 LKVACNLNNAACKLKLKDYKQAEK 469
           L++A  L      +  + +KQ ++
Sbjct: 568 LRIA--LMAEDEAIFEEAHKQVQR 589

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 17/84 (20%)

Query: 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVAC 450
            +      + K K +GN      +Y++A   Y +A   +                     
Sbjct: 3   RSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQA---LSIAP-------------ANPI 46

Query: 451 NLNN-AACKLKLKDYKQAEKLCTK 473
            L+N AA       +++A +    
Sbjct: 47  YLSNRAAAYSASGQHEKAAEDAEL 70

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 15/76 (19%)

Query: 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAAC 457
           +A + KEQGN LF   KY  A+  Y +A+        +                 N A C
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY---------------YTNRALC 47

Query: 458 KLKLKDYKQAEKLCTK 473
            LK++  +QA   C +
Sbjct: 48  YLKMQQPEQALADCRR 63

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 11/79 (13%)

Query: 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN 454
           +++   K  E    L + G+Y  A+ +YE     ++ + S  +      ++      +  
Sbjct: 230 QVKKLNKLIESAEELIRDGRYTDATSKYESV---MKTEPSVAEY---TVRSK---ERI-- 278

Query: 455 AACKLKLKDYKQAEKLCTK 473
             C  K +   +A ++C++
Sbjct: 279 CHCFSKDEKPVEAIRICSE 297

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 15/81 (18%)

Query: 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNA 455
           ++ A + K Q N  FKA  Y  A K Y +A++    +  +                 N +
Sbjct: 3   LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY---------------YGNRS 47

Query: 456 ACKLKLKDYKQAEKLCTKKCE 476
              L+ + Y  A    T+  E
Sbjct: 48  LAYLRTECYGYALGDATRAIE 68

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 11/79 (13%)

Query: 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN 454
           +++   K  E    L + G+Y  A+ +YE     ++ + S             V      
Sbjct: 253 QVKKLNKLIESAEELIRDGRYTDATSKYESV---MKTEPSI--------AEYTVRSKERI 301

Query: 455 AACKLKLKDYKQAEKLCTK 473
             C  K +   +A ++C++
Sbjct: 302 CHCFSKDEKPVEAIRVCSE 320

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 16/82 (19%), Positives = 24/82 (29%), Gaps = 17/82 (20%)

Query: 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNL 452
            + +    K  E G  L  AG+ A A  ++  A   ++ D                    
Sbjct: 20  FQSMADVEKHLELGKKLLAAGQLADALSQFHAA---VDGDPDN-------------YIAY 63

Query: 453 NN-AACKLKLKDYKQAEKLCTK 473
              A   L +   K A    TK
Sbjct: 64  YRRATVFLAMGKSKAALPDLTK 85

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 42.2 bits (98), Expect = 9e-05
 Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 3/84 (3%)

Query: 390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVA 449
           M   +++  A            AG+Y  A+    +A   +E   +   EE          
Sbjct: 2   MKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRA---MEISHTMPPEEAFDHAGFDAF 58

Query: 450 CNLNNAACKLKLKDYKQAEKLCTK 473
           C+   A     L+ + +A     K
Sbjct: 59  CHAGLAEALAGLRSFDEALHSADK 82

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 18/100 (18%)

Query: 374 YEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT 433
           +        + K    ++  ++   A + K +GN  F A  +  A K Y+ A   IE D 
Sbjct: 3   HMNGEPDIAQLKG---LSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYA---IELDP 56

Query: 434 SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473
           +                  N +AC +   D ++  +  TK
Sbjct: 57  NEPV------------FYSNISACYISTGDLEKVIEFTTK 84

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 16/80 (20%)

Query: 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLN 453
           EK + A   K++GN  F+  KY  A K Y  A++            K+           N
Sbjct: 1   EKDKYALALKDKGNQFFRNKKYDDAIKYYNWALEL-----------KEDPVFY-----SN 44

Query: 454 NAACKLKLKDYKQAEKLCTK 473
            +AC + + D K+  ++ TK
Sbjct: 45  LSACYVSVGDLKKVVEMSTK 64

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 40.2 bits (95), Expect = 8e-04
 Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 17/98 (17%)

Query: 377 ELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG 436
           +L + EKE +  +       E A + + +G   F    +  A K Y +    I+      
Sbjct: 117 KLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEM---IKRAPED- 172

Query: 437 DEEKKQAKALKVACNLNN-AACKLKLKDYKQAEKLCTK 473
                 A+        +N AA   KL  + +A   C K
Sbjct: 173 ------ARG------YSNRAAALAKLMSFPEAIADCNK 198

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	496
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	100.0
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	100.0
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	100.0
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	100.0
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	100.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	100.0
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.97
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.91
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.91
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.91
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.91
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.91
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.91
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.91
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.91
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.9
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.9
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.9
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.9
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.9
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.9
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.89
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.89
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.89
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.89
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.88
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.88
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.88
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.88
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.88
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.88
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.88
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.88
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.87
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.86
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.86
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.86
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.86
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.86
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.86
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.85
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.85
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.85
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.85
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.84
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.84
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.84
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.83
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.83
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.83
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.82
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.81
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.81
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	99.8
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.8
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	99.79
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.79
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	99.79
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	99.78
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.78
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	99.77
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	99.76
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	99.75
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	99.7
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	99.62
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	99.55
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	99.53
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.52
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	99.5
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	99.48
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.47
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	99.44
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	99.44
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	99.43
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	99.43
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.41
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	99.34
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.33
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.27
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	99.22
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.17
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.13
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	99.11
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.02
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.0
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	98.97
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.96
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	98.83
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.82
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.79
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.78
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.77
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.77
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.75
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.7
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.69
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.67
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.66
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.61
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.59
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.58
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.57
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.56
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.54
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.52
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.5
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.48
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.47
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.47
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.46
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.46
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.45
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.45
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.44
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.42
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.4
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.39
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.37
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.34
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.33
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.32
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.32
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.31
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.28
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.27
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.27
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.26
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.26
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.25
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.25
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.22
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.2
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.19
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.19
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.18
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.18
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.17
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.17
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.16
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.15
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.14
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.14
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.09
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.08
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.08
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.08
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.07
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.06
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.05
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.04
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.03
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.02
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.99
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.99
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.98
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.96
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.92
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	97.91
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.9
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.89
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.89
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.89
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.89
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.88
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.88
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.88
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.87
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.86
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.86
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.85
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.85
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.84
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.83
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.83
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.82
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.82
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.81
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.81
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.81
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.8
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.79
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.79
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.79
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.79
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.77
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.76
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.73
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.73
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.72
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.72
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.71
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.7
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	97.7
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.69
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.68
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.67
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.67
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.67
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.65
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.65
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.64
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.63
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.63
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.63
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.6
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.59
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.58
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.58
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.58
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.56
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.5
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.47
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.46
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	97.42
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.41
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.41
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.39
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.39
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.38
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.36
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	97.33
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.31
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.28
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.26
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.26
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.24
4g1t_A	472	Interferon-induced protein with tetratricopeptide	97.2
4g1t_A	472	Interferon-induced protein with tetratricopeptide	97.19
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.16
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.08
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.07
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.05
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.03
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.02
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.02
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.0
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	96.97
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	96.93
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	96.92
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	96.89
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	96.82
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.81
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.8
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	96.79
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.78
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	96.77
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.76
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.76
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.72
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	96.72
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	96.68
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.67
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	96.63
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	96.6
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	96.57
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	96.37
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.36
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	96.28
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	96.23
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	96.2
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	96.12
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.05
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	95.96
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	95.91
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	95.81
1klx_A	138	Cysteine rich protein B; structural genomics, heli	95.8
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	95.63
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	95.5
1klx_A	138	Cysteine rich protein B; structural genomics, heli	95.33
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	94.52
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.46
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	94.45
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	94.38
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	94.23
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	93.91
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	93.89
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	93.76
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	93.68
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	93.42
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.22
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.2
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	92.97
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	92.5
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	92.28
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	91.95
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	91.17
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	91.13
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	90.92
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	90.86
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	90.66
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	90.42
1pc2_A	152	Mitochondria fission protein; unknown function; NM	90.08
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	89.83
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	89.4
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	87.96
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	86.58
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	86.23
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	84.63
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	82.89
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	82.47

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=100.00  E-value=1.3e-68  Score=535.74  Aligned_cols=354  Identities=81%  Similarity=1.271  Sum_probs=223.4

Q ss_pred             cCceeeecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCc
Q 011003           28 VGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGE  107 (496)
Q Consensus        28 ~~~~~~~~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge  107 (496)
                      ++++..++++||+|+++++|+|+..|+.||.|.+||++++.||++|++|+.+++|+.|.+|.+++++||+++|.+|++|+
T Consensus         2 ~~~~~~~~~~Gl~~~i~~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~~~lG~g~~i~g~e~~l~gm~~Ge   81 (356)
T 3jxv_A            2 VGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGE   81 (356)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCccceECCCCeEEEEEEeecCCccCCCCCEEEEEEEEEECCCCEEEEcccCCCcEEEEeCCCccchHHHHHHhcCCCCC
Confidence            56677889999999999999997789999999999999999999999999888999999999999999999999999999


Q ss_pred             EEEEEecCCcccCCCCCCCCCCCCCceEEEEEEEEEeecceeccCccceeEeeeccccccCCCCCCeEEEEEEEEeCCCc
Q 011003          108 NAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM  187 (496)
Q Consensus       108 ~~~i~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~  187 (496)
                      +++|+|||++|||..+.++.||+|++|+|+|+|++|.++.++..|+.+.+++++.|.|+.+|..+|.|++||+++++||+
T Consensus        82 ~~~~~ip~~~aYG~~g~~~~Ip~~~~l~f~vel~~~~~~~di~~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~l~dgt  161 (356)
T 3jxv_A           82 NALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGT  161 (356)
T ss_dssp             ------------------------------------CCEEETTSSSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSC
T ss_pred             EEEEEEChHHhCCCCCCCCCcCCCCEEEEEeeEEeeecccccccCceeEEEEEecCcccCCCCCCCEEEEEEEEEECCCC
Confidence            99999999999999998889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeccceEEEecCCCCcchHHHHHhccccCcEEEEEecCCCccCCCCCCCCCCCCCCCCCceEEEEEEeeeecceeeec
Q 011003          188 VVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEIT  267 (496)
Q Consensus       188 ~~~~~~~~~~~~g~~~~~~gl~~~l~~m~~ge~~~v~vp~~~~~g~~~~~~~~~~~~i~~~~~l~~ev~l~~~~~~~d~~  267 (496)
                      +|+++.++.|.+|.+++++||+++|.+|++||+++++|||+++||+.|++..+....||++++|+|+|+|++|..+.+++
T Consensus       162 ~~~~~~~~~f~~g~~~v~~gl~~~l~~m~~GE~~~~~v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~v~dv~  241 (356)
T 3jxv_A          162 VVSKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIG  241 (356)
T ss_dssp             EEEEEEEEEEEGGGCSSSHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEECEEEES
T ss_pred             EEeccCCEEEEeCCCCcchHHHHHHhhCCCCCEEEEEEChHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEecccccc
Confidence            99999999999999999999999999999999999999999999999998777777899999999999999999999999


Q ss_pred             cCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEE
Q 011003          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT  347 (496)
Q Consensus       268 ~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~  347 (496)
                      .|.+++++++++|+|..+|..|+.|+|||.+++.||++|+++.. ...+|+.|.+|.+++++||+.+|.+|++||+++|+
T Consensus       242 ~d~~~~~~i~~~g~g~~~~~~gd~V~v~y~g~l~dG~~fd~~~~-~~~~p~~f~~G~g~~i~G~e~~l~gm~~Ge~~~v~  320 (356)
T 3jxv_A          242 DDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGH-DEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVT  320 (356)
T ss_dssp             TTCCEEEEEEECCBSSCCCCTTCEEEEEEEEEESSSCEEEEESC-TTSCCCEEETTTTSSCHHHHHHHTTCCBTCEEEEE
T ss_pred             cccceeEEeeecccccCCCCCCCEEEEEEEEEECCCCEEeeccc-cCCcCEEEEECCCccchHHHHHHhCCCCCCEEEEE
Confidence            99999999999999988999999999999999999999998743 35789999999999999999999999999999999


Q ss_pred             EcCCCccCCccccccccCCCCCCeEEEEEEEeeeec
Q 011003          348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (496)
Q Consensus       348 i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~~  383 (496)
                      |||++|||+.+... ...||++++|+|+|+|+++.+
T Consensus       321 ip~~~aYG~~~~~~-~~~Ip~~~~l~f~vel~~~~~  355 (356)
T 3jxv_A          321 IPPEYAYGSTESKQ-DAIVPPNSTVIYEVELVSFVK  355 (356)
T ss_dssp             ECGGGTTTTSCEES-SSEECTTCCEEEEEEEEEEEC
T ss_pred             EChHHccCCCCcCC-CCcCCcCCeEEEEEEEEEEEc
Confidence            99999999987532 356999999999999999874

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=100.00  E-value=5e-51  Score=424.41  Aligned_cols=333  Identities=40%  Similarity=0.711  Sum_probs=285.0

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEec
Q 011003           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (496)
Q Consensus        35 ~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip  114 (496)
                      +++||+|+++++|+|...|..||.|.|||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++|++++|+||
T Consensus        29 ~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~g~~~dss~~~~~p~~~~~g~~~~i~g~~~~l~~m~~Ge~~~~~i~  108 (457)
T 1kt0_A           29 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCK  108 (457)
T ss_dssp             ----CEEEC--------CCCBTCEEEEEEEEEC-----CBC------CEEEETTSTTSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEeccCCCCCCeEEEeCCcchhhHHHHHHhhCCCCCEEEEEEC
Confidence            68899999999999955599999999999999989999999988788999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCceEEEEEEEEEeecceeccCccceeEeeeccccccCCCCCCeEEEEEEEEeCCCceeeeccc
Q 011003          115 PELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADG  194 (496)
Q Consensus       115 ~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~  194 (496)
                      |+++||..+.++.||++++++|+|+|+++...                                                
T Consensus       109 ~~~~yg~~g~~~~i~~~~~l~~~v~l~~~~~~------------------------------------------------  140 (457)
T 1kt0_A          109 PEYAYGSAGSLPKIPSNATLFFEIELLDFKGE------------------------------------------------  140 (457)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEECE------------------------------------------------
T ss_pred             hHHhccccCCCCCCCCCCcEEEEEeeceeecc------------------------------------------------
Confidence            99999999987889999999999999887420                                                


Q ss_pred             eEEEecCCCCcchHHHHHhccccCcEEEEEecCCCccCCCCCCCCCCCCCCCCCceEEEEEEeeeecceeeeccCcceEE
Q 011003          195 VEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIK  274 (496)
Q Consensus       195 ~~~~~g~~~~~~gl~~~l~~m~~ge~~~v~vp~~~~~g~~~~~~~~~~~~i~~~~~l~~ev~l~~~~~~~d~~~d~~~~k  274 (496)
                                                                                            ++..|+++++
T Consensus       141 ----------------------------------------------------------------------~~~~dg~~~k  150 (457)
T 1kt0_A          141 ----------------------------------------------------------------------DLFEDGGIIR  150 (457)
T ss_dssp             ----------------------------------------------------------------------ETTSSSSEEE
T ss_pred             ----------------------------------------------------------------------cccCCcceEE
Confidence                                                                                  0112456778


Q ss_pred             EEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCcc---chhhHHHHHHhccccCcEEEEEEcCC
Q 011003          275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEE---QVIDGLDRAVITMKKNEVALLTIAPE  351 (496)
Q Consensus       275 ~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~---~~~~gle~~l~~M~~Ge~~~v~i~~~  351 (496)
                      +++++|.|..+|..|+.|++||.+++ +|++|+++       ++.|.+|+|   .++++|+.|+..|+.||++.+.++|.
T Consensus       151 ~i~~~g~~~~~p~~g~~V~v~y~g~~-~g~~f~~~-------~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~  222 (457)
T 1kt0_A          151 RTKRKGEGYSNPNEGATVEIHLEGRC-GGRMFDCR-------DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPR  222 (457)
T ss_dssp             EEEECCBCSCCCCTTCEEEEEEEEEE-TTEEEEEE-------EEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGG
T ss_pred             EEEecCCCCCCCCCCCEEEEEEEEEe-CCeEEecC-------ceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcc
Confidence            88889998889999999999999999 89999753       589999977   48999999999999999999999999


Q ss_pred             CccCCccccccccCCCCCCeEEEEEEEeeeeccccccccChHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhcc
Q 011003          352 YAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (496)
Q Consensus       352 ~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~~~~~~~~~~~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~  431 (496)
                      ++|+..+...  ..||+++.+.|++.|.++.+....|.+..+++...+..++.+|+.+|+.|+|.+|+..|++|+++.+.
T Consensus       223 ~ay~~~g~~~--~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~  300 (457)
T 1kt0_A          223 YGFGEAGKPK--FGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEM  300 (457)
T ss_dssp             GTTCSSCBGG--GTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             cccCCCCCcc--cCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc
Confidence            9999988753  46999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003          432 DTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      ...+.+++..++.+....+|+|+|.||+++++|.+|+.+|++||+++|+|++|||++|.+|+.+
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~  364 (457)
T 1kt0_A          301 EYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLM  364 (457)
T ss_dssp             CCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT
T ss_pred             cccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc
Confidence            7667777888889999999999999999999999999999999999999999999999998765

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=100.00  E-value=4.6e-40  Score=316.28  Aligned_cols=234  Identities=42%  Similarity=0.718  Sum_probs=208.9

Q ss_pred             cccccCceeee--cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHc
Q 011003           24 PMMKVGEEKEI--GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIK  101 (496)
Q Consensus        24 ~~~~~~~~~~~--~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~  101 (496)
                      ++.......+.  +++||+|+++++|+|...|+.||.|.|||++++.||++|+++++++.|+.|.+|.+++++||+++|.
T Consensus        36 ~~~~~~~~di~~~~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~  115 (280)
T 1q1c_A           36 APLPMEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIA  115 (280)
T ss_dssp             -----CCEECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHT
T ss_pred             cccCccccccccCCCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECCCCEEEecccCCCCEEEEECCcChhHHHHHHHh
Confidence            34445555555  6889999999999996559999999999999999999999998777899999999999999999999


Q ss_pred             cCcCCcEEEEEecCCcccCCCCCCCCCCCCCceEEEEEEEEEeecceec--cCccceeEeeeccccccCCCCCCeEEEEE
Q 011003          102 TMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDIC--KDGGIIKKILKEGEKWENPKDLDEVLVNY  179 (496)
Q Consensus       102 ~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~--~d~~~~k~i~~~g~g~~~~~~~d~V~v~y  179 (496)
                      +|++|++++|.|||++|||..+.++.||++++++|+|+|+++... ++.  .++.+.+++++.|+|...|..||.|++||
T Consensus       116 gm~~Ge~~~v~ipp~~aYG~~g~~~~Ip~~~~lvf~Vel~~i~~~-~~~~~~d~gl~~~il~~G~G~~~~~~gd~V~i~y  194 (280)
T 1q1c_A          116 TMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGE-DLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVAL  194 (280)
T ss_dssp             TCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEECE-ECCTTCSSSEEEEEEECCSCSCCCCTTCEEEEEE
T ss_pred             cCCCCCEEEEEECcHHhCCCcCccCCCCCCCcEEEEEEeeeeccc-ccccccccceeEEeeecccccccccCCceEEEEE
Confidence            999999999999999999999988899999999999999999863 454  67889999999999988899999999999


Q ss_pred             EEEeCCCceeeeccceEEEecCCC---CcchHHHHHhccccCcEEEEEecCCCccCCCCCCCCCCCCCCCCCceEEEEEE
Q 011003          180 EARLEDGMVVGKADGVEFTVKDGH---FCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALE  256 (496)
Q Consensus       180 ~~~~~~g~~~~~~~~~~~~~g~~~---~~~gl~~~l~~m~~ge~~~v~vp~~~~~g~~~~~~~~~~~~i~~~~~l~~ev~  256 (496)
                      ++++ +|++|++ +++.|.+|.+.   +++||+++|.+|++||+++++|||+++||+.+.+    ...||++++++|+|+
T Consensus       195 ~g~~-dG~~fd~-~~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~~~~yG~~~~~----~~~IP~~~~l~f~V~  268 (280)
T 1q1c_A          195 EGYY-KDKLFDQ-RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKE----KFQIPPNAELKYELH  268 (280)
T ss_dssp             EEEE-TTEEEEE-EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBG----GGTBCTTCCEEEEEE
T ss_pred             EEEe-CCEEEec-CCeEEEecCCcccccchhHHHHHhCCCCCcEEEEEEChhHcCCcCCCc----cCccCCCCeEEEEEE
Confidence            9999 8888887 68999999998   5999999999999999999999999999988754    236999999999999


Q ss_pred             eeeeccee
Q 011003          257 LVSWKTVS  264 (496)
Q Consensus       257 l~~~~~~~  264 (496)
                      |+++...+
T Consensus       269 L~~i~~~~  276 (280)
T 1q1c_A          269 LKSFEKAK  276 (280)
T ss_dssp             EEEEECCC
T ss_pred             EEEEeCCC
Confidence            99987544

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=100.00  E-value=4.8e-37  Score=295.26  Aligned_cols=223  Identities=37%  Similarity=0.671  Sum_probs=202.0

Q ss_pred             cCccceeEeeeccccccCCCCCCeEEEEEEEEeCCCceeeec----cceEEEecCCCCcchHHHHHhccccCcEEEEEec
Q 011003          151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK  226 (496)
Q Consensus       151 ~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~ge~~~v~vp  226 (496)
                      .++++.+++++.|.|..+|..+|.|++||++++.+|++|+++    +++.|.+|.+.+++||+++|.+|++||+++++||
T Consensus        49 ~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~ip  128 (280)
T 1q1c_A           49 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCK  128 (280)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECCCCEEEecccCCCCEEEEECCcChhHHHHHHHhcCCCCCEEEEEEC
Confidence            578899999999999878999999999999999999999986    5899999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCCCCCCCCCCCceEEEEEEeeeecceeeec--cCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCc
Q 011003          227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEIT--DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGT  304 (496)
Q Consensus       227 ~~~~~g~~~~~~~~~~~~i~~~~~l~~ev~l~~~~~~~d~~--~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~  304 (496)
                      |++|||+.+.+     ..||++++|+|+|+|+++.. .++.  .|++++++++++|+|...|..|+.|+|||.+++ +|+
T Consensus       129 p~~aYG~~g~~-----~~Ip~~~~lvf~Vel~~i~~-~~~~~~~d~gl~~~il~~G~G~~~~~~gd~V~i~y~g~~-dG~  201 (280)
T 1q1c_A          129 PEYAYGSAGSP-----PKIPPNATLVFEVELFEFKG-EDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDK  201 (280)
T ss_dssp             GGGTTTTTCBT-----TTBCTTCCEEEEEEEEEEEC-EECCTTCSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEE-TTE
T ss_pred             cHHhCCCcCcc-----CCCCCCCcEEEEEEeeeecc-cccccccccceeEEeeecccccccccCCceEEEEEEEEe-CCE
Confidence            99999998764     57999999999999999875 3566  788999999999999768999999999999998 899


Q ss_pred             EEEEcCCCCCcccEEEEcCccc---hhhHHHHHHhccccCcEEEEEEcCCCccCCccccccccCCCCCCeEEEEEEEeee
Q 011003          305 VFVKKGHSEEEQLFEFKTDEEQ---VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (496)
Q Consensus       305 ~~~~~~~~~~~~~~~~~lg~~~---~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~  381 (496)
                      +|++       .++.|.+|.++   +++||+.+|.+|++||+++|+|||+++||..+.+.  -.||++++++|+|+|+++
T Consensus       202 ~fd~-------~~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~~~~yG~~~~~~--~~IP~~~~l~f~V~L~~i  272 (280)
T 1q1c_A          202 LFDQ-------RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSF  272 (280)
T ss_dssp             EEEE-------EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBGG--GTBCTTCCEEEEEEEEEE
T ss_pred             EEec-------CCeEEEecCCcccccchhHHHHHhCCCCCcEEEEEEChhHcCCcCCCcc--CccCCCCeEEEEEEEEEE
Confidence            9975       48999999998   59999999999999999999999999999887542  259999999999999999


Q ss_pred             eccccccc
Q 011003          382 EKEKESWD  389 (496)
Q Consensus       382 ~~~~~~~~  389 (496)
                      .+.++.|+
T Consensus       273 ~~~~~~W~  280 (280)
T 1q1c_A          273 EKAKESWE  280 (280)
T ss_dssp             ECCCC---
T ss_pred             eCCCCCCC
Confidence            99888874

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=100.00  E-value=1.7e-36  Score=303.17  Aligned_cols=220  Identities=39%  Similarity=0.690  Sum_probs=205.5

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEec
Q 011003           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (496)
Q Consensus        35 ~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip  114 (496)
                      .+.++.++++++|+|+..|..||.|.+||++++.||++|+++.    ++.|.+|.+++++||+.+|.+|++||+++|+||
T Consensus       125 ~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~l~dgt~~~~~~----~~~f~~g~~~v~~gl~~~l~~m~~GE~~~~~v~  200 (356)
T 3jxv_A          125 KDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSE----GVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVK  200 (356)
T ss_dssp             SSSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEEE----EEEEEGGGCSSSHHHHHHHTTCCBTCEEEEEEC
T ss_pred             cCceeEEEEEecCcccCCCCCCCEEEEEEEEEECCCCEEeccC----CEEEEeCCCCcchHHHHHHhhCCCCCEEEEEEC
Confidence            5689999999999999999999999999999999999999873    799999999999999999999999999999999


Q ss_pred             CCcccCCCCCCC-----CCCCCCceEEEEEEEEEeecceeccCccceeEeeeccccccCCCCCCeEEEEEEEEeCCCcee
Q 011003          115 PELAYGESGSPP-----TIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVV  189 (496)
Q Consensus       115 ~~~ayg~~~~~~-----~ip~~~~l~~~v~l~~~~~~~~~~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~  189 (496)
                      |+++||..+.+.     .||++++|.|+|+|++|..+.++..+..+.+++++.|+|+..|..+|.|++||++++.+|++|
T Consensus       201 p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~v~dv~~d~~~~~~i~~~g~g~~~~~~gd~V~v~y~g~l~dG~~f  280 (356)
T 3jxv_A          201 PQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVF  280 (356)
T ss_dssp             GGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEECEEEESTTCCEEEEEEECCBSSCCCCTTCEEEEEEEEEESSSCEE
T ss_pred             hHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEecccccccccceeEEeeecccccCCCCCCCEEEEEEEEEECCCCEE
Confidence            999999988753     699999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eec-----cceEEEecCCCCcchHHHHHhccccCcEEEEEecCCCccCCCCCCCCCCCCCCCCCceEEEEEEeeeec
Q 011003          190 GKA-----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK  261 (496)
Q Consensus       190 ~~~-----~~~~~~~g~~~~~~gl~~~l~~m~~ge~~~v~vp~~~~~g~~~~~~~~~~~~i~~~~~l~~ev~l~~~~  261 (496)
                      +++     +++.|.+|.+++++||+++|.+|++||+++++|||++|||+.+..   ....||++++|+|+|+|+++.
T Consensus       281 d~~~~~~~~p~~f~~G~g~~i~G~e~~l~gm~~Ge~~~v~ip~~~aYG~~~~~---~~~~Ip~~~~l~f~vel~~~~  354 (356)
T 3jxv_A          281 LKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESK---QDAIVPPNSTVIYEVELVSFV  354 (356)
T ss_dssp             EEESCTTSCCCEEETTTTSSCHHHHHHHTTCCBTCEEEEEECGGGTTTTSCEE---SSSEECTTCCEEEEEEEEEEE
T ss_pred             eeccccCCcCEEEEECCCccchHHHHHHhCCCCCCEEEEEEChHHccCCCCcC---CCCcCCcCCeEEEEEEEEEEE
Confidence            865     579999999999999999999999999999999999999987642   125689999999999999875

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=100.00  E-value=3.6e-33  Score=278.53  Aligned_cols=223  Identities=32%  Similarity=0.487  Sum_probs=196.3

Q ss_pred             CcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcC-CcEEEEcCCCCCcccEEEEcCcc-chhhHHHHHHhccccCcEEEE
Q 011003          269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQD-GTVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRAVITMKKNEVALL  346 (496)
Q Consensus       269 d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~-g~~~~~~~~~~~~~~~~~~lg~~-~~~~gle~~l~~M~~Ge~~~v  346 (496)
                      +.++.++++++|.| ..|..|+.|+|||.+++.+ |++|++++.  .+.|+.|.+|.+ ++++||+.+|.+|++||++.|
T Consensus        48 ~~~~~~~~~~~g~g-~~~~~gd~v~v~y~g~~~~~g~~fd~~~~--~~~~~~~~lg~~~~~i~g~e~~l~~m~~Ge~~~~  124 (338)
T 2if4_A           48 DEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWH--EQQPIELVLGKEKKELAGLAIGVASMKSGERALV  124 (338)
T ss_dssp             ETTEEEEEEECCBS-CCCCTTCEEEEEEEEEETTTCCCCEEHHH--HTCCEEEETTSCCGGGHHHHHHHHHCCBTCEEEE
T ss_pred             CCCeEEEEEeCCCC-CCCCCCCEEEEEEEEEEcCCCcEeecccC--CCCCeEEEcCCCCcccHHHHHHHhcCCCCCeEEE
Confidence            56899999999999 6899999999999999985 999998743  468999999999 999999999999999999999


Q ss_pred             EEcCCCccCCccccccccCCCCCCeEEEEEEEeeeeccc---cccccChHHHHHHHhhhHHhhhhhHhcccHHHHHHHHH
Q 011003          347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEK---ESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYE  423 (496)
Q Consensus       347 ~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~~~~---~~~~~~~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~  423 (496)
                      +||+.++||..+... .+.||++++++|+|+|+++....   ..|.++.+++++.+..++..|+.+|+.++|.+|+..|.
T Consensus       125 ~i~~~~~yg~~~~~~-~~~ip~~~~l~f~v~L~~~~~~~e~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~  203 (338)
T 2if4_A          125 HVGWELAYGKEGNFS-FPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYE  203 (338)
T ss_dssp             EECGGGSSCSSCCCS-SSCCCTTCCEEEEEEEEEEECCCCCBTTTBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHH
T ss_pred             EECHHHhcCCCCCCC-CCCCCCCCcEEEEEEEEEecCCccccccccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            999999999987631 25699999999999999998644   47889999999999999999999999999999999999


Q ss_pred             HHhhhhccCC--CCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003          424 KAVKYIEYDT--SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       424 ~al~~~~~~~--~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      +|+++.+...  ............+...+|+|+|.||+++++|.+|+.+|++||+++|+|.++||++|.+|+.+
T Consensus       204 ~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~  277 (338)
T 2if4_A          204 MAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAEL  277 (338)
T ss_dssp             HHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            9999865432  11222333445566679999999999999999999999999999999999999999998765

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.97  E-value=1.3e-30  Score=259.77  Aligned_cols=223  Identities=39%  Similarity=0.700  Sum_probs=204.6

Q ss_pred             eeeeccCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccc---hhhHHHHHHhccc
Q 011003          263 VSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ---VIDGLDRAVITMK  339 (496)
Q Consensus       263 ~~d~~~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~---~~~gle~~l~~M~  339 (496)
                      ..+++.|++++|+|+++|.|..+|..|+.|+|||.+++ +|++||++       |+.|.+|.|.   ++++|+.||..|+
T Consensus        18 ~~~~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~-~g~~fd~~-------~~~f~lG~g~~~~~~~~~e~al~~~~   89 (336)
T 1p5q_A           18 GSHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQR-------ELRFEIGEGENLDLPYGLERAIQRME   89 (336)
T ss_dssp             ----CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEE-TTEEEEEE-------EEEEETTCGGGGTCCHHHHHHHTTCC
T ss_pred             ceeecCCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE-CCEEEecC-------CeEEEeCCCCccccchHHHHHHhcCC
Confidence            45667899999999999999768999999999999999 99999864       8999999887   5899999999999


Q ss_pred             cCcEEEEEEcCCCccCCccccccccCCCCCCeEEEEEEEeeeeccccccccChHHHHHHHhhhHHhhhhhHhcccHHHHH
Q 011003          340 KNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARAS  419 (496)
Q Consensus       340 ~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~~~~~~~~~~~~e~~~~a~~~k~~Gn~~fk~~~y~~A~  419 (496)
                      +||++.+.++|+++||..|...  ..||+++.+.|+++|.++......+.+..+.....+..+...|+.+++.|+|.+|+
T Consensus        90 ~Ge~~~l~i~p~~ayg~~g~~~--~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~  167 (336)
T 1p5q_A           90 KGEHSIVYLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQAL  167 (336)
T ss_dssp             TTCEEEEEECTTTTTTTTCBGG--GTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCeEEEEECCccccCcCCCCc--cCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            9999999999999999988753  36999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003          420 KRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       420 ~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      ..|++|+++.+.......+...++.+....+|+|+|.||+++++|.+|+.+|++||+++|+++++||++|.+|+.+
T Consensus       168 ~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  243 (336)
T 1p5q_A          168 LQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAV  243 (336)
T ss_dssp             HHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence            9999999998877666677788889999999999999999999999999999999999999999999999998765

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.91  E-value=4.7e-24  Score=177.10  Aligned_cols=111  Identities=50%  Similarity=0.855  Sum_probs=103.9

Q ss_pred             ecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEe
Q 011003           34 IGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI  113 (496)
Q Consensus        34 ~~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~i  113 (496)
                      .+++|++|+++++|+|...++.||.|.+||++++.||++|++++.+++|+.|.+|.+++++||+++|.+|++|++++|.|
T Consensus         3 ~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~v~i   82 (113)
T 1yat_A            3 VIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTI   82 (113)
T ss_dssp             ECGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEE
T ss_pred             CCCCCeEEEEEECCCCcccCCCCCEEEEEEEEEECCCCEEEecCCCCCcEEEEeCCCCccHHHHHHHhCCCCCCEEEEEE
Confidence            47899999999999994339999999999999999999999998777899999999999999999999999999999999


Q ss_pred             cCCcccCCCCCCCCCCCCCceEEEEEEEEEe
Q 011003          114 PPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (496)
Q Consensus       114 p~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~  144 (496)
                      ||++|||..+.++.||+|++++|+|+|++++
T Consensus        83 p~~~ayG~~~~~~~Ip~~~~l~f~vel~~ik  113 (113)
T 1yat_A           83 PGPYAYGPRGFPGLIPPNSTLVFDVELLKVN  113 (113)
T ss_dssp             CGGGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             CHHHCcCCCCCCCCcCCCCeEEEEEEEEEeC
Confidence            9999999998877899999999999998873

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.91  E-value=5.3e-24  Score=178.59  Aligned_cols=109  Identities=46%  Similarity=0.832  Sum_probs=102.0

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCC-------CccEEEEeCCCcccHHHHHHHccCcCCc
Q 011003           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDR-------STPFKFTLGQGNVIKGWDIGIKTMKKGE  107 (496)
Q Consensus        35 ~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~-------~~p~~~~~G~~~~~~gle~~l~~m~~Ge  107 (496)
                      .|+|++|+++++|+|...|+.||.|.+||++++.||++|++|+..       +.|+.|.+|.+++++||+++|.+|++|+
T Consensus         2 ~p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge   81 (119)
T 3kz7_A            2 GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGE   81 (119)
T ss_dssp             CSCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTC
T ss_pred             CCCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCCCEEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCC
Confidence            589999999999999667999999999999999999999999753       4899999999999999999999999999


Q ss_pred             EEEEEecCCcccCCCCCCC-CCCCCCceEEEEEEEEE
Q 011003          108 NAVFTIPPELAYGESGSPP-TIPPNATLQFDVELLSW  143 (496)
Q Consensus       108 ~~~i~ip~~~ayg~~~~~~-~ip~~~~l~~~v~l~~~  143 (496)
                      +++|.|||++|||..+.+. .||++++|+|+|+|+++
T Consensus        82 ~~~v~ip~~~aYG~~g~~~~~Ip~~~~l~f~veL~~i  118 (119)
T 3kz7_A           82 KARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI  118 (119)
T ss_dssp             EEEEEECGGGTTCTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred             EEEEEECcHHhcCCCCCCCCccCcCCeEEEEEEEEEe
Confidence            9999999999999998754 79999999999999986

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.91  E-value=3.7e-24  Score=183.13  Aligned_cols=121  Identities=55%  Similarity=0.993  Sum_probs=105.3

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEec
Q 011003           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (496)
Q Consensus        35 ~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip  114 (496)
                      +++|++|+++++|+|...|+.||.|.+||++++.||++|++++.+++|+.|.+|.+++++||+++|.+|++|++++|.||
T Consensus        12 ~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~~~v~ip   91 (135)
T 1r9h_A           12 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIR   91 (135)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred             CCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCCCEEEecCcCCCCEEEEeCCCCccHHHHHHHhcCCCCCEEEEEEC
Confidence            67899999999999955799999999999999999999999986668999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCceEEEEEEEEEeecceec--cCccce
Q 011003          115 PELAYGESGSPPTIPPNATLQFDVELLSWTSVKDIC--KDGGII  156 (496)
Q Consensus       115 ~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~--~d~~~~  156 (496)
                      |++|||..+.+..||++++++|+|+|+++... ++.  .|+.++
T Consensus        92 ~~~aYG~~g~~~~Ip~~~~l~f~v~l~~i~~~-~l~~~~d~~v~  134 (135)
T 1r9h_A           92 SDYGYGDAGSPPKIPGGATLIFEVELFEWSAE-DISPDRDGTIL  134 (135)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC-------------
T ss_pred             hHHcCCCCCCCCCcCcCCcEEEEEEEEEeecC-CcCcCCCCccc
Confidence            99999999987899999999999999999763 333  455544

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.91  E-value=6.6e-25  Score=187.51  Aligned_cols=126  Identities=36%  Similarity=0.638  Sum_probs=106.0

Q ss_pred             CCCCCCcccccCcee--eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEc-CCCEEEeecCCCccEEEEeCCCcccH
Q 011003           18 DLPDDAPMMKVGEEK--EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFKFTLGQGNVIK   94 (496)
Q Consensus        18 ~~~~~~~~~~~~~~~--~~~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~-dg~~~~~t~~~~~p~~~~~G~~~~~~   94 (496)
                      +.++..|+.+++.+.  +.+++||+|+++++|+| ..+..||.|.+||++++. +|++|++++.+++|+.|.+|.+++++
T Consensus         5 ~~~~~~~~~~~~~~~~~v~~~~gl~~~vl~~G~g-~~~~~gd~V~v~Y~g~l~~~G~~fdss~~~~~p~~f~lG~g~~i~   83 (134)
T 3b7x_A            5 DAPGQSLYERLSQRMLDISGDRGVLKDVIREGAG-DLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLW   83 (134)
T ss_dssp             ----CCHHHHHTTTCEESSSSSSEEEEEEECCEE-EECCTTCEEEEEEEEECTTCSSCSEEC-------CEEC-CCCCCH
T ss_pred             cCCCCChhHHhccccceeeCCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCeEEEecCCCCCCEEEEcCCcchhH
Confidence            456778888777666  56889999999999999 678899999999999988 69999999877789999999999999


Q ss_pred             HHHHHHccCcCCcEEEEEecCCcccCCCCCCCCCCCCCceEEEEEEEEEe
Q 011003           95 GWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (496)
Q Consensus        95 gle~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~  144 (496)
                      ||+++|.+|++|++++|.|||++|||..+.++.||+|++++|+|+|+++.
T Consensus        84 G~e~aL~gm~~Ge~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A           84 GMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             HHHHHHHTCEETCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             HHHHHHhCCCCCCEEEEEECHHHCcCCCCCCCCcCcCCeEEEEEEEEEEe
Confidence            99999999999999999999999999999877899999999999999875

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.91  E-value=4.5e-24  Score=181.02  Aligned_cols=111  Identities=52%  Similarity=0.906  Sum_probs=105.3

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEec
Q 011003           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (496)
Q Consensus        35 ~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip  114 (496)
                      +++|++|+++++|+|...|+.||.|.+||++++.||++|++++.+++|+.|.+|.+++++||+++|.+|++|++++|.||
T Consensus        17 ~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ip   96 (128)
T 3o5q_A           17 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCK   96 (128)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHhcCCCCCEEEEEEC
Confidence            67899999999999965799999999999999999999999987678999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCceEEEEEEEEEee
Q 011003          115 PELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (496)
Q Consensus       115 ~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~  145 (496)
                      |++|||..+.++.||++++|+|+|+|+++..
T Consensus        97 ~~~aYG~~g~~~~Ip~~~~l~f~vel~~i~~  127 (128)
T 3o5q_A           97 PEYAYGSAGSLPKIPSNATLFFEIELLDFKG  127 (128)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             hHHcCCCCCCCCCcCCCCEEEEEEEEEEecC
Confidence            9999999998889999999999999999863

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.91  E-value=5.8e-24  Score=183.88  Aligned_cols=110  Identities=53%  Similarity=0.913  Sum_probs=105.4

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEec
Q 011003           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (496)
Q Consensus        35 ~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip  114 (496)
                      .++|++|+++++|+|...|..||.|.|||++++.||++|++++.++.|+.|.+|.+++++||+++|.+|++|++++|.||
T Consensus        33 ~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ip  112 (144)
T 3o5e_A           33 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCK  112 (144)
T ss_dssp             CSSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTTSCEEEESGGGTSCEEEETTSSSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred             CCCeEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEeecccCCCeEEEeCCCcccHHHHHHHhCCCCCCEEEEEEC
Confidence            68899999999999965899999999999999999999999988789999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCceEEEEEEEEEe
Q 011003          115 PELAYGESGSPPTIPPNATLQFDVELLSWT  144 (496)
Q Consensus       115 ~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~  144 (496)
                      |++|||..+.++.||++++|+|+|+|+++.
T Consensus       113 p~~aYG~~g~~~~Ipp~~~L~f~VeL~~ik  142 (144)
T 3o5e_A          113 PEYAYGSAGSLPKIPSNATLFFEIELLDFK  142 (144)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             hHHCcCCCCCCCCcCCCCeEEEEEEEEEec
Confidence            999999999888999999999999999986

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.91  E-value=1e-23  Score=173.39  Aligned_cols=106  Identities=51%  Similarity=0.943  Sum_probs=100.0

Q ss_pred             CeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCc
Q 011003           38 GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL  117 (496)
Q Consensus        38 g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~  117 (496)
                      ||+|+++++|+|...++.||.|.+||++++.||++|++++.+++|+.|.+|.+++++||+++|.+|++|++++|.|||++
T Consensus         1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~ip~~~   80 (107)
T 2ppn_A            1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY   80 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred             CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEEEECHHH
Confidence            79999999999944499999999999999999999999987668999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCceEEEEEEEEE
Q 011003          118 AYGESGSPPTIPPNATLQFDVELLSW  143 (496)
Q Consensus       118 ayg~~~~~~~ip~~~~l~~~v~l~~~  143 (496)
                      |||..+.++.||++++++|+|+|+++
T Consensus        81 ayG~~~~~~~Ip~~~~l~f~v~l~~v  106 (107)
T 2ppn_A           81 AYGATGHPGIIPPHATLVFDVELLKL  106 (107)
T ss_dssp             TTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             ccCCCCCCCCcCCCCeEEEEEEEEEe
Confidence            99999887789999999999999886

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.91  E-value=1.6e-23  Score=178.34  Aligned_cols=110  Identities=53%  Similarity=0.881  Sum_probs=104.6

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEE
Q 011003           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (496)
Q Consensus        33 ~~~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~  112 (496)
                      ..+++|++|+++++|+| ..++.||.|.+||++++.||++|++++++++|+.|.+|.+++++||+++|.+|++|++++|.
T Consensus        24 ~~~~~gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~eeaL~gmk~Ge~~~v~  102 (133)
T 2y78_A           24 VTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLT  102 (133)
T ss_dssp             EECTTSCEEEEEECCSS-CBCCTTSEEEEEEEEEETTSCEEEETTTTTCCEEEETTSSSSCHHHHHHSTTCBTTCEEEEE
T ss_pred             EECCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEeccCcCCCCEEEEeCCCChhHHHHHHHcCCCCCCEEEEE
Confidence            55889999999999999 78999999999999999999999999877789999999999999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCceEEEEEEEEE
Q 011003          113 IPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (496)
Q Consensus       113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~  143 (496)
                      |||++|||..+.++.||+|++++|+|+|+++
T Consensus       103 ip~~~aYG~~~~~~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A          103 IPPQLGYGARGAGGVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             ECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred             ECcHHhCCCCCCCCCCCCCCeEEEEEEEEEC
Confidence            9999999999987789999999999999874

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.90  E-value=6.5e-24  Score=211.49  Aligned_cols=118  Identities=31%  Similarity=0.616  Sum_probs=107.3

Q ss_pred             ccCceeeecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcC-CCEEEeecCCCccEEEEeCCC-cccHHHHHHHccCc
Q 011003           27 KVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLD-GTQFDSSRDRSTPFKFTLGQG-NVIKGWDIGIKTMK  104 (496)
Q Consensus        27 ~~~~~~~~~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~d-g~~~~~t~~~~~p~~~~~G~~-~~~~gle~~l~~m~  104 (496)
                      ++......+++|+.|+++++|+| ..|..||.|.|||++++.+ |++|++++.++.|+.|.+|.+ ++++||+++|.+|+
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~g~g-~~~~~gd~v~v~y~g~~~~~g~~fd~~~~~~~~~~~~lg~~~~~i~g~e~~l~~m~  117 (338)
T 2if4_A           39 KVDSEAEVLDEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMK  117 (338)
T ss_dssp             CCCSCCEEEETTEEEEEEECCBS-CCCCTTCEEEEEEEEEETTTCCCCEEHHHHTCCEEEETTSCCGGGHHHHHHHHHCC
T ss_pred             CCCcCceeCCCCeEEEEEeCCCC-CCCCCCCEEEEEEEEEEcCCCcEeecccCCCCCeEEEcCCCCcccHHHHHHHhcCC
Confidence            45555667889999999999999 6899999999999999985 999999987678999999999 89999999999999


Q ss_pred             CCcEEEEEecCCcccCCCCC--CCCCCCCCceEEEEEEEEEee
Q 011003          105 KGENAVFTIPPELAYGESGS--PPTIPPNATLQFDVELLSWTS  145 (496)
Q Consensus       105 ~Ge~~~i~ip~~~ayg~~~~--~~~ip~~~~l~~~v~l~~~~~  145 (496)
                      +|++++|.|||+++||..+.  .+.||++++++|.|+|+++..
T Consensus       118 ~Ge~~~~~i~~~~~yg~~~~~~~~~ip~~~~l~f~v~L~~~~~  160 (338)
T 2if4_A          118 SGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDE  160 (338)
T ss_dssp             BTCEEEEEECGGGSSCSSCCCSSSCCCTTCCEEEEEEEEEEEC
T ss_pred             CCCeEEEEECHHHhcCCCCCCCCCCCCCCCcEEEEEEEEEecC
Confidence            99999999999999999886  357999999999999988764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.90  E-value=1.4e-24  Score=225.13  Aligned_cols=226  Identities=25%  Similarity=0.284  Sum_probs=142.6

Q ss_pred             eec--cCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCc
Q 011003          265 EIT--DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNE  342 (496)
Q Consensus       265 d~~--~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge  342 (496)
                      +++  .++++.++++++|+|...|..|+.|+|||.+++.||++|++++.  .+.|+.|.+|.+.+++||+.+|.+|++||
T Consensus        24 ~~~~~~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~g~~~dss~~--~~~p~~~~~g~~~~i~g~~~~l~~m~~Ge  101 (457)
T 1kt0_A           24 DITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHD--RNEPFVFSLGKGQVIKAWDIGVATMKRGE  101 (457)
T ss_dssp             ---------CEEEC--------CCCBTCEEEEEEEEEC-----CBC--------CEEEETTSTTSCHHHHHHHTTCCTTC
T ss_pred             cccCCCCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEeccCC--CCCCeEEEeCCcchhhHHHHHHhhCCCCC
Confidence            455  68899999999999966699999999999999999999998743  56899999999999999999999999999


Q ss_pred             EEEEEEcCCCccCCccccccccCCCCCCeEEEEEEEeeeeccccc---------------cccChH-HH--HHHH-----
Q 011003          343 VALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKES---------------WDMNTE-EK--IEAA-----  399 (496)
Q Consensus       343 ~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~~~~~~---------------~~~~~~-e~--~~~a-----  399 (496)
                      ++.|+|||+++||..+.+   +.||++++++|+|+|+++....-.               +..... ..  ....     
T Consensus       102 ~~~~~i~~~~~yg~~g~~---~~i~~~~~l~~~v~l~~~~~~~~~~dg~~~k~i~~~g~~~~~p~~g~~V~v~y~g~~~g  178 (457)
T 1kt0_A          102 ICHLLCKPEYAYGSAGSL---PKIPSNATLFFEIELLDFKGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCGG  178 (457)
T ss_dssp             EEEEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEECEETTSSSSEEEEEEECCBCSCCCCTTCEEEEEEEEEETT
T ss_pred             EEEEEEChHHhccccCCC---CCCCCCCcEEEEEeeceeecccccCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEeCC
Confidence            999999999999998865   579999999999999998753100               000000 00  0000     


Q ss_pred             hh--------hHHhhhhhHhcccHHHHHHHHHH----HhhhhccC----------------------------CCCCh-H
Q 011003          400 GK--------KKEQGNTLFKAGKYARASKRYEK----AVKYIEYD----------------------------TSFGD-E  438 (496)
Q Consensus       400 ~~--------~k~~Gn~~fk~~~y~~A~~~Y~~----al~~~~~~----------------------------~~~~~-~  438 (496)
                      ..        ...+|+..--...++.|+..+++    ++.+-+..                            ..... +
T Consensus       179 ~~f~~~~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~  258 (457)
T 1kt0_A          179 RMFDCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWE  258 (457)
T ss_dssp             EEEEEEEEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGG
T ss_pred             eEEecCceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhh
Confidence            00        00011111111245555555544    22210000                            00000 1


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC---------------cchhcccccccccc
Q 011003          439 EKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK---------------GSGIHSDGRFRFGR  495 (496)
Q Consensus       439 ~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~---------------~Ka~~rrg~a~~~l  495 (496)
                      ......+.....+.|++.+++++++|.+|+..+++||+++|++               ..+|+++|.||+.+
T Consensus       259 ~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~  330 (457)
T 1kt0_A          259 MDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL  330 (457)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1123466778899999999999999999999999999999999               68999999988764

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.90  E-value=4.9e-24  Score=185.98  Aligned_cols=118  Identities=25%  Similarity=0.359  Sum_probs=99.6

Q ss_pred             eecCCCeEEEEEEcccCCC-CCCCCCEEEEEEEEEEcC--CCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEE
Q 011003           33 EIGNQGLKKKLVKEGEGWD-TPENGDEVEVHYTGTLLD--GTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA  109 (496)
Q Consensus        33 ~~~~~g~~~~~l~~G~G~~-~~~~gd~V~v~Y~~~~~d--g~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~  109 (496)
                      .++++||+|+++++|+|.. .+..||.|.+||++++.|  |++||||+++++|+.|.+|.+++|+||+++|.+|++|+++
T Consensus         6 ~~~~~Gv~~~vl~~G~G~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS~~rg~P~~f~lG~g~vI~Gwd~gl~~M~~Ge~~   85 (165)
T 2lkn_A            6 RLREDGIQKRVIQEGRGELPDFQDGTKATFHYRTLHSDDEGTVLDDSRARGKPMELIIGKKFKLPVWETIVCTMREGEIA   85 (165)
T ss_dssp             HHHTTSCCCCEEECCSSCCCCCCTTCEEEEECEEECSSSSCCEEEESTTTTCCEEEESSSSCSCSHHHHHHTTCCTTCEE
T ss_pred             cccCCCeEEEEEECCcCCCCCCCCCCEEEEEEEEEEeCCCccEEEecccCCCCEEEEecCCCccHHHHHHHhcCccCceE
Confidence            3578999999999999942 236899999999999965  9999999999999999999999999999999999999999


Q ss_pred             EEEecCCcccCCC--------CCCCC-----------------------------CCCCCceEEEEEEEEEeecceec
Q 011003          110 VFTIPPELAYGES--------GSPPT-----------------------------IPPNATLQFDVELLSWTSVKDIC  150 (496)
Q Consensus       110 ~i~ip~~~ayg~~--------~~~~~-----------------------------ip~~~~l~~~v~l~~~~~~~~~~  150 (496)
                      +|+|||++|||..        .....                             ++++++|+|+|||+++..+....
T Consensus        86 ~~~ipp~laYG~p~v~~~~r~~~~~~~p~~~~~~~~g~~~~~~~~~~g~~d~~~li~~p~~L~FeIELl~Ve~P~eye  163 (165)
T 2lkn_A           86 QFLCDIKHVVLYPLVAKSLRNIAVGKDPLEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHMEMLKVESPGTYQ  163 (165)
T ss_dssp             EEECCHHHHSSHHHHHHHHTTGGGSSTTTTTCSCCSSCCSCCCCCCCCCSTTTHHHHSCCCCEEEEEEEEEECTTTCC
T ss_pred             EEEECHHHhcCCcchhhhhhhccccCCCccccccceeeeeccccccccccccccccCCCCCeEEEEEEEEEcCCcccc
Confidence            9999999999921        00111                             23447899999999998765543

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.90  E-value=3.7e-23  Score=185.21  Aligned_cols=129  Identities=29%  Similarity=0.558  Sum_probs=113.2

Q ss_pred             CCCCCcccccCceeeecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEc-CCCEEEeecCCCccEEEEeCCC-cccHHH
Q 011003           19 LPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFKFTLGQG-NVIKGW   96 (496)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~-dg~~~~~t~~~~~p~~~~~G~~-~~~~gl   96 (496)
                      ++.+....+..+....+++|++|+++++|+| ..|..||.|.|||++++. ||++|++|+.++.|+.|.+|.+ ++++||
T Consensus        31 ~~~~~~p~~~~~~~~~~~~gl~~~vl~~G~G-~~~~~Gd~V~v~Y~g~l~~dG~~fdss~~~~~p~~f~lG~g~~vi~G~  109 (180)
T 2f4e_A           31 SQEGNVPPKVDSEAEVLDEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGL  109 (180)
T ss_dssp             ---CCSCCCCCSCCEEEETTEEEEEEECCBS-CCBCTTCEEEEEEEEEETTTCCEEEETTTTTCCEEEETTSCCGGGHHH
T ss_pred             CCcccCCcccCCCcEECCCceEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCcEEeccCccCCCEEEEeCCCCchhHHH
Confidence            3333334456666778999999999999999 689999999999999998 5999999988789999999999 999999


Q ss_pred             HHHHccCcCCcEEEEEecCCcccCCCCC--CCCCCCCCceEEEEEEEEEeecce
Q 011003           97 DIGIKTMKKGENAVFTIPPELAYGESGS--PPTIPPNATLQFDVELLSWTSVKD  148 (496)
Q Consensus        97 e~~l~~m~~Ge~~~i~ip~~~ayg~~~~--~~~ip~~~~l~~~v~l~~~~~~~~  148 (496)
                      +++|.+|++|++++|.|||+++||..+.  .+.||+|++++|+|+|+++.....
T Consensus       110 eeaL~gMk~Ge~~~v~iPp~~aYG~~g~~~~~~Ip~~s~l~F~VeL~~v~~~~e  163 (180)
T 2f4e_A          110 AIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKE  163 (180)
T ss_dssp             HHHHTTCCBTCEEEEEECGGGTTTTTCBSSSSCBCTTCCEEEEEEEEEESCBCC
T ss_pred             HHHHhCCCCCCEEEEEECchHhCCcCCcccCCCcCCCCeEEEEEEEEEEecCcc
Confidence            9999999999999999999999999886  357999999999999999976543

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.90  E-value=1.9e-23  Score=177.27  Aligned_cols=113  Identities=54%  Similarity=0.963  Sum_probs=104.6

Q ss_pred             eeeecCCCeEEE--EEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcE
Q 011003           31 EKEIGNQGLKKK--LVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGEN  108 (496)
Q Consensus        31 ~~~~~~~g~~~~--~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~  108 (496)
                      ....+++|++|+  ++++|+|...++.||.|.+||++++.||++|++++.+++|+.|.+|.+++++||+++|.+|++|++
T Consensus        16 ~~~~~~~Gl~~~K~~l~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~   95 (130)
T 2lgo_A           16 TQGPGSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEK   95 (130)
T ss_dssp             SCSSSSSSCCCCEEEEECCCSSCCCCTTSEEEEEEEEECTTSCEEECTTTTTCCEEEETTSTTSCHHHHHHHHHSCTTEE
T ss_pred             cceeCCCceEEEEEEEeccCCCccCCCCCEEEEEEEEEECCCCEEEccCcCCCCEEEEeCCCCccHHHHHHHhCCCCCCE
Confidence            345578999999  999999943399999999999999989999999988778999999999999999999999999999


Q ss_pred             EEEEecCCcccCCCCCCCCCCCCCceEEEEEEEEE
Q 011003          109 AVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (496)
Q Consensus       109 ~~i~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~  143 (496)
                      ++|.|||++|||..+.++.||+|++++|+|+|+++
T Consensus        96 ~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A           96 ALFTIPYQLAYGERGYPPVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             EEEEECTTTSTTTTCCSTTSCSSCCEEEEEEEEEC
T ss_pred             EEEEECcHHHCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence            99999999999999987789999999999999874

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.90  E-value=5e-23  Score=174.05  Aligned_cols=111  Identities=38%  Similarity=0.668  Sum_probs=103.9

Q ss_pred             eecCCCeEEEEEEccc--CCCCCCCCCEEEEEEEEEEc-CCCEEEeecC--CCccEEEEeCCCcccHHHHHHHccCcCCc
Q 011003           33 EIGNQGLKKKLVKEGE--GWDTPENGDEVEVHYTGTLL-DGTQFDSSRD--RSTPFKFTLGQGNVIKGWDIGIKTMKKGE  107 (496)
Q Consensus        33 ~~~~~g~~~~~l~~G~--G~~~~~~gd~V~v~Y~~~~~-dg~~~~~t~~--~~~p~~~~~G~~~~~~gle~~l~~m~~Ge  107 (496)
                      +++++|++|+++++|+  | ..++.||.|.+||++++. ||++|++++.  .+.|+.|.+|.+++++||+++|.+|++|+
T Consensus         8 ~~~~~gl~~~~l~~g~~~g-~~~~~gd~V~v~Y~g~~~~dG~~fdss~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge   86 (125)
T 4dip_A            8 LIPEPEVKIEVLQKPFICH-RKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGE   86 (125)
T ss_dssp             GCCCCCCEEEEEECCSCCS-CCCCTTCEEEEEEEEEETTTCCEEEEHHHHTTTCCEEEETTSCSSCHHHHHHSTTCCTTC
T ss_pred             EECCCCeEEEEEEcCCCCC-CcCCCCCEEEEEEEEEECCCCcEEEEcccCCCCcCEEEEeCCCChhHHHHHHHhCCCCCC
Confidence            4678999999999998  5 789999999999999999 9999999973  46899999999999999999999999999


Q ss_pred             EEEEEecCCcccCCCCCCCCCCCCCceEEEEEEEEEee
Q 011003          108 NAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (496)
Q Consensus       108 ~~~i~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~  145 (496)
                      +++|.|||++|||..+.+ .||++++|+|+|+|+++..
T Consensus        87 ~~~~~ip~~~aYG~~g~~-~Ip~~~~l~f~vel~~i~~  123 (125)
T 4dip_A           87 KRKLIIPPALGYGKEGKG-KIPPESTLIFNIDLLEIRN  123 (125)
T ss_dssp             EEEEEECGGGTTTTTCBT-TBCTTCCEEEEEEEEEEEC
T ss_pred             EEEEEEChHHhcCCCCCC-CCCCCCeEEEEEEEEEEEc
Confidence            999999999999999966 8999999999999999864

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.89  E-value=1.2e-22  Score=186.15  Aligned_cols=111  Identities=52%  Similarity=0.873  Sum_probs=105.5

Q ss_pred             eeecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEE
Q 011003           32 KEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVF  111 (496)
Q Consensus        32 ~~~~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i  111 (496)
                      ...+++|++|+++++|+| ..|..||.|.+||++++.||++|+++++++.|+.|.+|.+++++||+++|.+|++|++++|
T Consensus        99 ~~~~~sGl~~~vl~~G~G-~~~~~gd~V~v~Y~g~l~dG~~fdss~~~~~P~~f~lG~g~vi~G~eeaL~gM~~Ge~~~v  177 (209)
T 3uf8_A           99 VVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRL  177 (209)
T ss_dssp             CEECTTSCEEEEEECCCS-CBCCTTCEEEEEEEEEETTSCEEEESGGGTCCEEEETTSSSSCHHHHHHHTTCBTTCEEEE
T ss_pred             ccCCCCceEEEEEEcCCC-CcCCCCCEEEEEEEEEECCCCEEEEccccCCCEEEEeCCCccchhHHHHHhCCCCCCEEEE
Confidence            356899999999999999 6799999999999999999999999988789999999999999999999999999999999


Q ss_pred             EecCCcccCCCCCCCCCCCCCceEEEEEEEEE
Q 011003          112 TIPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (496)
Q Consensus       112 ~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~  143 (496)
                      .|||++|||..+.++.||+|++|+|+|+|+++
T Consensus       178 ~Ipp~~aYG~~g~~~~IP~~s~LvF~VeL~~I  209 (209)
T 3uf8_A          178 TIPPQLGYGARGAAGVIPPNATLVFEVELLDV  209 (209)
T ss_dssp             EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred             EECcHHhCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence            99999999999988789999999999999874

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.89  E-value=5.3e-23  Score=181.24  Aligned_cols=111  Identities=43%  Similarity=0.712  Sum_probs=104.4

Q ss_pred             eeecCCCeEEEEEEcccCCCC-CCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEE
Q 011003           32 KEIGNQGLKKKLVKEGEGWDT-PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV  110 (496)
Q Consensus        32 ~~~~~~g~~~~~l~~G~G~~~-~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~  110 (496)
                      ...+++||+|+++++|+| .. |..||.|.|||++++.||++|++++.++.|+.|.+|  ++++||+++|.+|++|++++
T Consensus        32 ~~~~~sGl~~~vl~~G~G-~~~~~~gd~V~v~Y~g~l~dG~~fdss~~~g~p~~f~lg--~vI~G~eeaL~gMk~Ge~~~  108 (167)
T 1jvw_A           32 AVKLPSGLVFQRIARGSG-KRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPN--EVIKGWTEALQLMREGDRWR  108 (167)
T ss_dssp             EEECTTSCEEEEEECCCC-SBCCCTTCCEEEEEEEECTTSCEEEEHHHHTSCEEECGG--GSCHHHHHHHTTCCTTCEEE
T ss_pred             cEECCCCEEEEEEEcCCC-CcCCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEeC--chhHHHHHHHcCCCCCCEEE
Confidence            467899999999999999 66 999999999999999999999999876789999995  89999999999999999999


Q ss_pred             EEecCCcccCCCCCCCCCCCCCceEEEEEEEEEee
Q 011003          111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (496)
Q Consensus       111 i~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~  145 (496)
                      |+|||++|||..+.++.||+|++|+|+|+|+++..
T Consensus       109 ~~Ip~~laYG~~g~~~~Ipp~s~LiF~VeL~~i~~  143 (167)
T 1jvw_A          109 LFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKD  143 (167)
T ss_dssp             EEECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGG
T ss_pred             EEECchhhCCCCCCCCCcCCCCeEEEEEEEEEEEc
Confidence            99999999999998778999999999999999974

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.89  E-value=2.4e-22  Score=170.81  Aligned_cols=113  Identities=47%  Similarity=0.835  Sum_probs=101.4

Q ss_pred             eecCCCe-EEEEEEcc-cC-CCCCCCCCEEEEEEEEEE-cCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcE
Q 011003           33 EIGNQGL-KKKLVKEG-EG-WDTPENGDEVEVHYTGTL-LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGEN  108 (496)
Q Consensus        33 ~~~~~g~-~~~~l~~G-~G-~~~~~~gd~V~v~Y~~~~-~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~  108 (496)
                      .++++|+ +++++++| +| ...++.||.|.+||++++ .||++|++++.+++|+.|.+|.+++++||+++|.+|++|++
T Consensus        11 ~~~~~g~~~~~il~~G~~g~g~~~~~gd~V~v~Y~g~~~~dG~~fd~s~~~~~p~~f~lG~g~~i~g~e~~l~gm~~Ge~   90 (129)
T 2vn1_A           11 ELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEK   90 (129)
T ss_dssp             ECSTTSSEEEEEEECCCCSGGGSCCTTCEEEEEEEEEETTTCCEEEEGGGTTCCEEEETTSSSSCHHHHHHHTTCCTTCE
T ss_pred             EECCCCCEEEEEEeCCCCCCCCcCCCCCEEEEEEEEEECCCCeEEEecCCCCccEEEEeCCCCcCHHHHHHHhCCCCCCE
Confidence            4455655 55799976 44 278999999999999999 79999999987778999999999999999999999999999


Q ss_pred             EEEEecCCcccCCCCCCCCCCCCCceEEEEEEEEEee
Q 011003          109 AVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (496)
Q Consensus       109 ~~i~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~  145 (496)
                      ++|.|||++|||..+.++.||+|++++|+|+|+++..
T Consensus        91 ~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           91 CLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             EEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             EEEEEChHHcCCCCCCCCCcCCCCeEEEEEEEEEEec
Confidence            9999999999999988778999999999999999864

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.89  E-value=1.2e-22  Score=185.50  Aligned_cols=106  Identities=34%  Similarity=0.616  Sum_probs=101.1

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEE
Q 011003           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (496)
Q Consensus        33 ~~~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~  112 (496)
                      ..+++|++|+++++|+| ..|..||.|.|||++++.||++|++|   +.|+.|.+|  ++|+||+++|.+|++|++++|+
T Consensus       113 ~~~~sGl~y~vl~~G~G-~~p~~gd~V~V~Y~g~l~dG~vfDss---~~P~~f~lG--~vI~G~eeaL~gMk~Gek~~v~  186 (219)
T 3oe2_A          113 KELADGILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQS---TQPQWFRLD--SVISGWTSALQNMPTGAKWRLV  186 (219)
T ss_dssp             EECGGGCEEEEEECCCS-CCCCTTSEEEEEEEEECTTSCEEEEC---SSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEE
T ss_pred             EECCCCeEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEeecc---CCcEEEEec--chhHHHHHHHhCCCCCCEEEEE
Confidence            56899999999999999 78999999999999999999999999   589999998  8999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCceEEEEEEEEEe
Q 011003          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (496)
Q Consensus       113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~  144 (496)
                      |||++|||..+.++.||++++|+|+|+|+++.
T Consensus       187 IPp~lAYG~~g~~~~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          187 IPSDQAYGAEGAGDLIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             ECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             ECchhcCCCCCCCCCCCCCCeEEEEEEEEEEe
Confidence            99999999999887899999999999999985

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.88  E-value=2.5e-22  Score=173.64  Aligned_cols=116  Identities=39%  Similarity=0.593  Sum_probs=106.5

Q ss_pred             ceeeec--cCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccc
Q 011003          262 TVSEIT--DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMK  339 (496)
Q Consensus       262 ~~~d~~--~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~  339 (496)
                      ...|++  .|++++++++++|+|...|..++.|.|||.+++.||++|++++.  .+.|+.|.+|.+++++||+.+|.+|+
T Consensus        25 ~~~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~--~~~p~~f~lG~g~~i~G~e~~l~gm~  102 (144)
T 3o5e_A           25 QGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHD--RNEPFVFSLGKGQVIKAWDIGVATMK  102 (144)
T ss_dssp             HCEECCSSCSSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTTSCEEEESGG--GTSCEEEETTSSSSCHHHHHHHTTCC
T ss_pred             ccccccccCCCeEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEeecc--cCCCeEEEeCCCcccHHHHHHHhCCC
Confidence            456666  68899999999999966899999999999999999999998753  57899999999999999999999999


Q ss_pred             cCcEEEEEEcCCCccCCccccccccCCCCCCeEEEEEEEeeee
Q 011003          340 KNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (496)
Q Consensus       340 ~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~  382 (496)
                      +||+++|+|||++|||+.+.+   +.|||+++|+|+|+|+++.
T Consensus       103 ~Ge~~~v~ipp~~aYG~~g~~---~~Ipp~~~L~f~VeL~~ik  142 (144)
T 3o5e_A          103 KGEICHLLCKPEYAYGSAGSL---PKIPSNATLFFEIELLDFK  142 (144)
T ss_dssp             BTCEEEEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEE
T ss_pred             CCCEEEEEEChHHCcCCCCCC---CCcCCCCeEEEEEEEEEec
Confidence            999999999999999999875   5799999999999999986

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.88  E-value=4.8e-22  Score=173.10  Aligned_cols=110  Identities=34%  Similarity=0.559  Sum_probs=101.3

Q ss_pred             eecCCCe-EEEEEEcccCC-CCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEE
Q 011003           33 EIGNQGL-KKKLVKEGEGW-DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV  110 (496)
Q Consensus        33 ~~~~~g~-~~~~l~~G~G~-~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~  110 (496)
                      .++++|+ +|+++++|+|. ..|+.||.|.|||++++.||++|+++    +|+.|.+|.+++++||+++|.+|++|++++
T Consensus        38 ~~~~sG~v~~~vl~~G~G~~~~p~~gd~V~v~Y~g~l~dG~~fds~----~p~~f~lG~g~vi~G~eeaL~gMk~Ge~~~  113 (157)
T 2jwx_A           38 DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDVGETAM  113 (157)
T ss_dssp             ESSSSSSEEEEEEECCSTTSCCCCTTEEEEEEEEEECTTSCEEEEE----EEEEEETTTTSSCHHHHHHTTTSCTTCEEE
T ss_pred             eECCCCCEEEEEEEccCCCccCCCCCCEEEEEEEEEECCCCEeecC----CCEEEEeCCCChhHHHHHHHcCCCCCCEEE
Confidence            4677886 89999999992 38999999999999999999999984    799999999999999999999999999999


Q ss_pred             EEecCCcccCCCC-CCCCCCCCCceEEEEEEEEEeec
Q 011003          111 FTIPPELAYGESG-SPPTIPPNATLQFDVELLSWTSV  146 (496)
Q Consensus       111 i~ip~~~ayg~~~-~~~~ip~~~~l~~~v~l~~~~~~  146 (496)
                      |+||+++|||..+ .+..||+|++++|+|+|+++...
T Consensus       114 v~IP~~~aYG~~g~~~~~IPp~stLiF~VeL~~i~~~  150 (157)
T 2jwx_A          114 VTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDL  150 (157)
T ss_dssp             EEECGGGTTTTTCCSSSCCCTTCCEEEEEEEEEEEEC
T ss_pred             EEECchhcCCcccccCCCcCCCCeEEEEEEEEEEEcc
Confidence            9999999999998 66789999999999999998754

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.88  E-value=7.1e-23  Score=173.88  Aligned_cols=112  Identities=41%  Similarity=0.711  Sum_probs=103.6

Q ss_pred             eeeecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHcc------Cc
Q 011003           31 EKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKT------MK  104 (496)
Q Consensus        31 ~~~~~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~------m~  104 (496)
                      ....+++||+|+++++|+| ..++.||.|.+||++++.||++|++++.+++|+.|.+|.+++++||+++|.+      |+
T Consensus         6 ~~~~~~~Gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~~i~G~~~~L~G~~~~~~m~   84 (129)
T 1u79_A            6 EFSVSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPML   84 (129)
T ss_dssp             CCEECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCB
T ss_pred             ccEECCCCeEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCCccHHHHHHhcccccccccC
Confidence            3456889999999999999 7899999999999999999999999986568999999999999999999998      99


Q ss_pred             CCcEEEEEecCCcccCCCCCC-----CCCCCCCceEEEEEEEEE
Q 011003          105 KGENAVFTIPPELAYGESGSP-----PTIPPNATLQFDVELLSW  143 (496)
Q Consensus       105 ~Ge~~~i~ip~~~ayg~~~~~-----~~ip~~~~l~~~v~l~~~  143 (496)
                      +|++++|.|||++|||..+.+     ..||+|++++|+|+|+++
T Consensus        85 ~Ge~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           85 TGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             TTCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             CCCEEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            999999999999999998863     479999999999999876

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.88  E-value=3e-22  Score=179.28  Aligned_cols=128  Identities=34%  Similarity=0.497  Sum_probs=103.9

Q ss_pred             cCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEc-CCcEEEEcCCCCCcccEEEEcCcc-chhhHHHHHHhccccCcEEE
Q 011003          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQ-DGTVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRAVITMKKNEVAL  345 (496)
Q Consensus       268 ~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~-~g~~~~~~~~~~~~~~~~~~lg~~-~~~~gle~~l~~M~~Ge~~~  345 (496)
                      .++++.++++++|+| ..|..|+.|+|||.+++. +|++|++++.  ...|+.|.+|.+ ++++||+.+|.+|++||++.
T Consensus        47 ~~~gl~~~vl~~G~G-~~~~~Gd~V~v~Y~g~l~~dG~~fdss~~--~~~p~~f~lG~g~~vi~G~eeaL~gMk~Ge~~~  123 (180)
T 2f4e_A           47 LDEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWH--EQQPIELVLGKEKKELAGLAIGVASMKSGERAL  123 (180)
T ss_dssp             EETTEEEEEEECCBS-CCBCTTCEEEEEEEEEETTTCCEEEETTT--TTCCEEEETTSCCGGGHHHHHHHTTCCBTCEEE
T ss_pred             CCCceEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCcEEeccCc--cCCCEEEEeCCCCchhHHHHHHHhCCCCCCEEE
Confidence            356899999999999 689999999999999998 5999998854  568999999999 99999999999999999999


Q ss_pred             EEEcCCCccCCccccccccCCCCCCeEEEEEEEeeeecccc---ccccChHHHHHHH
Q 011003          346 LTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE---SWDMNTEEKIEAA  399 (496)
Q Consensus       346 v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~~~~~---~~~~~~~e~~~~a  399 (496)
                      |+|||++|||..+... .+.|||+++|+|+|+|+++....+   .|+|+.+|+++.|
T Consensus       124 v~iPp~~aYG~~g~~~-~~~Ip~~s~l~F~VeL~~v~~~~e~~~~~~mt~eErl~~A  179 (180)
T 2f4e_A          124 VHVGWELAYGKEGNFS-FPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAA  179 (180)
T ss_dssp             EEECGGGTTTTTCBSS-SSCBCTTCCEEEEEEEEEESCBCCC---------------
T ss_pred             EEECchHhCCcCCccc-CCCcCCCCeEEEEEEEEEEecCccccccccCCHHHHHhhc
Confidence            9999999999987531 246999999999999999998877   8999999999876

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.88  E-value=2.3e-22  Score=183.93  Aligned_cols=111  Identities=36%  Similarity=0.624  Sum_probs=104.4

Q ss_pred             eeecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEE
Q 011003           32 KEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVF  111 (496)
Q Consensus        32 ~~~~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i  111 (496)
                      ...+++|++|+++++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.+|  ++++||+++|.+|++|++++|
T Consensus       101 v~~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~lg--~vI~G~eeaL~gMk~Gek~~v  177 (213)
T 1fd9_A          101 VVVLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVS--QVIPGWTEALQLMPAGSTWEI  177 (213)
T ss_dssp             EEECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEGG--GSCHHHHHHHTTCCTTCEEEE
T ss_pred             cEECCCccEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEcC--chhhHHHHHHcCCCCCCEEEE
Confidence            366899999999999999 78999999999999999999999999877789999995  899999999999999999999


Q ss_pred             EecCCcccCCCCCCCCCCCCCceEEEEEEEEEee
Q 011003          112 TIPPELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (496)
Q Consensus       112 ~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~  145 (496)
                      +|||+++||..+.++.||+|++++|+|+|+++..
T Consensus       178 ~IP~~laYG~~g~~~~Ipp~stLiF~VeLl~v~~  211 (213)
T 1fd9_A          178 YVPSGLAYGPRSVGGPIGPNETLIFKIHLISVKK  211 (213)
T ss_dssp             EECGGGTTTTCCCSSSCCTTCCEEEEEEEEEEEC
T ss_pred             EECchhccCccCCCCCCCCCCeEEEEEEEEEEEc
Confidence            9999999999998778999999999999999863

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.88  E-value=7.1e-22  Score=165.56  Aligned_cols=112  Identities=40%  Similarity=0.627  Sum_probs=101.1

Q ss_pred             CcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCC-----CCcccEEEEcCccchhhHHHHHHhccccCcE
Q 011003          269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHS-----EEEQLFEFKTDEEQVIDGLDRAVITMKKNEV  343 (496)
Q Consensus       269 d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~-----~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~  343 (496)
                      +++++|+++++|+|...|..+|.|.|||.+++.||++|++++..     ....|+.|.+|.+++++||+++|.+|++||+
T Consensus         3 p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge~   82 (119)
T 3kz7_A            3 PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEK   82 (119)
T ss_dssp             SCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTCE
T ss_pred             CCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCCCEEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCCE
Confidence            56899999999999778999999999999999999999987531     1248999999999999999999999999999


Q ss_pred             EEEEEcCCCccCCccccccccCCCCCCeEEEEEEEeeee
Q 011003          344 ALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (496)
Q Consensus       344 ~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~  382 (496)
                      +.|+|||++|||+.+...  ..|||+++|+|+|+|++++
T Consensus        83 ~~v~ip~~~aYG~~g~~~--~~Ip~~~~l~f~veL~~i~  119 (119)
T 3kz7_A           83 ARLEIEPEWAYGKKGQPD--AKIPPNTKLIFEVELVDID  119 (119)
T ss_dssp             EEEEECGGGTTCTTCBGG--GTBCTTCCEEEEEEEEEEC
T ss_pred             EEEEECcHHhcCCCCCCC--CccCcCCeEEEEEEEEEeC
Confidence            999999999999988752  4699999999999999874

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.88  E-value=6.2e-22  Score=165.49  Aligned_cols=108  Identities=34%  Similarity=0.563  Sum_probs=99.6

Q ss_pred             eecCCC-eEEEEEEcccCC-CCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEE
Q 011003           33 EIGNQG-LKKKLVKEGEGW-DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV  110 (496)
Q Consensus        33 ~~~~~g-~~~~~l~~G~G~-~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~  110 (496)
                      .++++| ++|+++++|+|. ..|+.||.|.+||++++.||++|+++    +|+.|.+|.+++++||+++|.+|++|++++
T Consensus         8 ~~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~~dG~~~ds~----~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~   83 (118)
T 2awg_A            8 DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDVGETAM   83 (118)
T ss_dssp             ESSSSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEECTTSCEEEEE----EEEEEETTSSCSCHHHHHHGGGSCTTCEEE
T ss_pred             EECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEECC----CCEEEEECCCChhHHHHHHHhCCCCCCEEE
Confidence            445666 999999999993 27999999999999999899999984    799999999999999999999999999999


Q ss_pred             EEecCCcccCCCCCCCCCCCCCceEEEEEEEEEe
Q 011003          111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (496)
Q Consensus       111 i~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~  144 (496)
                      |.|||++|||..+.++.||++++++|+|+|+++.
T Consensus        84 ~~ip~~~ayG~~~~~~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           84 VTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             EEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             EEEChHHccCCCCCCCccCCCCeEEEEEEEEEec
Confidence            9999999999998877899999999999999875

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.88  E-value=6.3e-22  Score=167.78  Aligned_cols=111  Identities=39%  Similarity=0.598  Sum_probs=102.9

Q ss_pred             cCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEE
Q 011003          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT  347 (496)
Q Consensus       268 ~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~  347 (496)
                      .|++++++++++|+|...|..++.|.|||.+++.||++|+++..  ...|+.|.+|.+++++||+.+|.+|++||+++|+
T Consensus        17 ~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~--~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~   94 (128)
T 3o5q_A           17 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHD--RNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLL   94 (128)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEHHH--HTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEE
T ss_pred             CCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEecCC--CCCCEEEEECCCCccHHHHHHHhcCCCCCEEEEE
Confidence            67899999999999966899999999999999999999998743  4689999999999999999999999999999999


Q ss_pred             EcCCCccCCccccccccCCCCCCeEEEEEEEeeeec
Q 011003          348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (496)
Q Consensus       348 i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~~  383 (496)
                      |||++|||+.+..   +.|||+++|+|+|+|+++..
T Consensus        95 ip~~~aYG~~g~~---~~Ip~~~~l~f~vel~~i~~  127 (128)
T 3o5q_A           95 CKPEYAYGSAGSL---PKIPSNATLFFEIELLDFKG  127 (128)
T ss_dssp             ECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEEC
T ss_pred             EChHHcCCCCCCC---CCcCCCCEEEEEEEEEEecC
Confidence            9999999998875   57999999999999999863

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.87  E-value=1.2e-21  Score=180.49  Aligned_cols=107  Identities=50%  Similarity=0.923  Sum_probs=101.3

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEE
Q 011003           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (496)
Q Consensus        33 ~~~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~  112 (496)
                      ..+++|++|+++++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.+|  ++++||+++|.+|++|++++|+
T Consensus       117 ~~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~lg--~vI~G~eeaL~gMk~Gek~~v~  193 (224)
T 1q6h_A          117 KTSSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLV  193 (224)
T ss_dssp             EECTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEGG--GSCHHHHHHGGGSCTTCEEEEE
T ss_pred             EECCCceEEEEEecccC-ccccCCCEEEEEEEEEeCCCCEEeeccccCCCEEEEcC--CcchhHHHHHcCCCCCCEEEEE
Confidence            45789999999999999 78999999999999999999999999987789999995  8999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCceEEEEEEEEE
Q 011003          113 IPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (496)
Q Consensus       113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~  143 (496)
                      |||+++||..+.++ ||+|++++|+|+|+++
T Consensus       194 IP~~laYG~~g~~~-IPp~stLiF~VeL~~i  223 (224)
T 1q6h_A          194 IPPELAYGKAGVPG-IPPNSTLVFDVELLDV  223 (224)
T ss_dssp             ECGGGTTTTTCBTT-BCTTCCEEEEEEEEEE
T ss_pred             ECchhhcCcCCCCC-CCCCCEEEEEEEEEEe
Confidence            99999999998764 9999999999999987

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.86  E-value=2.7e-21  Score=165.23  Aligned_cols=115  Identities=39%  Similarity=0.625  Sum_probs=104.9

Q ss_pred             eeec--cCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccC
Q 011003          264 SEIT--DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKN  341 (496)
Q Consensus       264 ~d~~--~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~G  341 (496)
                      .|++  .+++++++++++|+|...|..++.|+|||.+++.||++|+++..  ...|+.|.+|.+++++||+.+|.+|++|
T Consensus         6 ~dv~~~~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG~~fdss~~--~~~p~~f~lG~~~vi~G~e~~l~gm~~G   83 (135)
T 1r9h_A            6 IDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRD--RGDQFSFNLGRGNVIKGWDLGVATMTKG   83 (135)
T ss_dssp             EECSTTCCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHH--HTSCEEEETTTTSSCHHHHHHHTTCCBT
T ss_pred             eecccCCCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCCCEEEecCc--CCCCEEEEeCCCCccHHHHHHHhcCCCC
Confidence            4556  68899999999999965799999999999999999999998742  3589999999999999999999999999


Q ss_pred             cEEEEEEcCCCccCCccccccccCCCCCCeEEEEEEEeeeec
Q 011003          342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (496)
Q Consensus       342 e~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~~  383 (496)
                      |+++|+|||++|||+.+.+   ..||++++|+|+|+|+++..
T Consensus        84 e~~~v~ip~~~aYG~~g~~---~~Ip~~~~l~f~v~l~~i~~  122 (135)
T 1r9h_A           84 EVAEFTIRSDYGYGDAGSP---PKIPGGATLIFEVELFEWSA  122 (135)
T ss_dssp             CEEEEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEEC
T ss_pred             CEEEEEEChHHcCCCCCCC---CCcCcCCcEEEEEEEEEeec
Confidence            9999999999999998864   57999999999999999975

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=1.6e-21  Score=166.69  Aligned_cols=112  Identities=34%  Similarity=0.550  Sum_probs=101.8

Q ss_pred             eecCCC-eEEEEEEcccCC-CCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEE
Q 011003           33 EIGNQG-LKKKLVKEGEGW-DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV  110 (496)
Q Consensus        33 ~~~~~g-~~~~~l~~G~G~-~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~  110 (496)
                      .++++| ++|+++++|+|. ..++.||.|.+||++++.||++|+++    +|+.|.+|.+++++||+++|.+|++|++++
T Consensus        12 ~~~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~~~dG~~fds~----~p~~f~lG~g~~i~G~e~~L~gm~~Ge~~~   87 (135)
T 2d9f_A           12 DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDVGETAM   87 (135)
T ss_dssp             ESSSSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEEESSSCEEEEE----EEEEEETTSCCSCTTTTTTGGGSCTTCEEE
T ss_pred             EECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEecC----CCEEEEeCCCChhHHHHHHHhCCCCCCEEE
Confidence            445666 999999999993 38999999999999999999999983    799999999999999999999999999999


Q ss_pred             EEecCCcccCCCC-CCCCCCCCCceEEEEEEEEEeecce
Q 011003          111 FTIPPELAYGESG-SPPTIPPNATLQFDVELLSWTSVKD  148 (496)
Q Consensus       111 i~ip~~~ayg~~~-~~~~ip~~~~l~~~v~l~~~~~~~~  148 (496)
                      |.|||++|||..+ .+..||++++++|+|+|+++....+
T Consensus        88 v~ip~~~aYG~~~~~~~~Ip~~~~l~f~vel~~v~~~~~  126 (135)
T 2d9f_A           88 VTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRPD  126 (135)
T ss_dssp             EEECHHHHTCTTCCSSSCCCTTCCEEEEEEEEEEESSCS
T ss_pred             EEEChhHccCcCCcCCCccCCCCeEEEEEEEEEeecCCc
Confidence            9999999999998 6678999999999999999986544

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.86  E-value=1.1e-21  Score=167.45  Aligned_cols=115  Identities=29%  Similarity=0.518  Sum_probs=99.1

Q ss_pred             ceeeeccCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEc-CCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhcccc
Q 011003          262 TVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQ-DGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKK  340 (496)
Q Consensus       262 ~~~d~~~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~-~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~  340 (496)
                      .+.+++.+++++++++++|+| ..+..++.|+|||.+++. +|++|++++.  ...|+.|.+|.+++++||+.+|.+|++
T Consensus        18 ~~~~v~~~~gl~~~vl~~G~g-~~~~~gd~V~v~Y~g~l~~~G~~fdss~~--~~~p~~f~lG~g~~i~G~e~aL~gm~~   94 (134)
T 3b7x_A           18 RMLDISGDRGVLKDVIREGAG-DLVAPDASVLVKYSGYLEHMDRPFDSNYF--RKTPRLMKLGEDITLWGMELGLLSMRR   94 (134)
T ss_dssp             TCEESSSSSSEEEEEEECCEE-EECCTTCEEEEEEEEECTTCSSCSEEC---------CEEC-CCCCCHHHHHHHHTCEE
T ss_pred             ccceeeCCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCeEEEecCC--CCCCEEEEcCCcchhHHHHHHHhCCCC
Confidence            467788899999999999999 677889999999999998 6999998743  468999999999999999999999999


Q ss_pred             CcEEEEEEcCCCccCCccccccccCCCCCCeEEEEEEEeeee
Q 011003          341 NEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (496)
Q Consensus       341 Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~  382 (496)
                      ||+++|+|||++|||+.+.+   +.|||+++|+|+|+|+++.
T Consensus        95 Ge~~~v~ip~~~aYG~~~~~---~~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A           95 GELARFLFKPNYAYGTLGCP---PLIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             TCEEEEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEC
T ss_pred             CCEEEEEECHHHCcCCCCCC---CCcCcCCeEEEEEEEEEEe
Confidence            99999999999999998765   4699999999999999885

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.86  E-value=7e-21  Score=157.91  Aligned_cols=109  Identities=30%  Similarity=0.498  Sum_probs=99.2

Q ss_pred             CcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEE
Q 011003          269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTI  348 (496)
Q Consensus       269 d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i  348 (496)
                      +.++.++++++|+|..+|..||.|.+||.+++.||++|++++.  ...|+.|.+|.+++++||+.+|.+|++||+++|.|
T Consensus         5 ~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~--~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~v~i   82 (113)
T 1yat_A            5 EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVD--RGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTI   82 (113)
T ss_dssp             GGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTT--TTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEE
T ss_pred             CCCeEEEEEECCCCcccCCCCCEEEEEEEEEECCCCEEEecCC--CCCcEEEEeCCCCccHHHHHHHhCCCCCCEEEEEE
Confidence            5689999999999954499999999999999999999998743  45899999999999999999999999999999999


Q ss_pred             cCCCccCCccccccccCCCCCCeEEEEEEEeeee
Q 011003          349 APEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (496)
Q Consensus       349 ~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~  382 (496)
                      ||++|||+.+.+   +.|||+++|+|+|+|+++.
T Consensus        83 p~~~ayG~~~~~---~~Ip~~~~l~f~vel~~ik  113 (113)
T 1yat_A           83 PGPYAYGPRGFP---GLIPPNSTLVFDVELLKVN  113 (113)
T ss_dssp             CGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEC
T ss_pred             CHHHCcCCCCCC---CCcCCCCeEEEEEEEEEeC
Confidence            999999998764   4699999999999999873

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.86  E-value=4.5e-22  Score=173.59  Aligned_cols=117  Identities=15%  Similarity=0.169  Sum_probs=95.3

Q ss_pred             ccCcceEEEEEecCCCcCC-CCCCCeEEEEEEEEEcC--CcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcE
Q 011003          267 TDDKKVIKKILKEGDGFER-PNEGAVVKVKLIGKLQD--GTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEV  343 (496)
Q Consensus       267 ~~d~~~~k~il~~G~g~~~-p~~~~~V~v~y~~~~~~--g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~  343 (496)
                      +.++++.|+++++|+|... +..|++|+|||.+++.|  |++||+++.  +++|++|.+|.+++|+||+.+|.+|++||+
T Consensus         7 ~~~~Gv~~~vl~~G~G~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS~~--rg~P~~f~lG~g~vI~Gwd~gl~~M~~Ge~   84 (165)
T 2lkn_A            7 LREDGIQKRVIQEGRGELPDFQDGTKATFHYRTLHSDDEGTVLDDSRA--RGKPMELIIGKKFKLPVWETIVCTMREGEI   84 (165)
T ss_dssp             HHTTSCCCCEEECCSSCCCCCCTTCEEEEECEEECSSSSCCEEEESTT--TTCCEEEESSSSCSCSHHHHHHTTCCTTCE
T ss_pred             ccCCCeEEEEEECCcCCCCCCCCCCEEEEEEEEEEeCCCccEEEeccc--CCCCEEEEecCCCccHHHHHHHhcCccCce
Confidence            3567899999999999422 35799999999999965  999999865  679999999999999999999999999999


Q ss_pred             EEEEEcCCCccCCcccc-----ccccC-----------------------------CCCCCeEEEEEEEeeeeccc
Q 011003          344 ALLTIAPEYAFGSAESQ-----QELAV-----------------------------VPPNSTVHYEVELVSFEKEK  385 (496)
Q Consensus       344 ~~v~i~~~~~yg~~~~~-----~~~~~-----------------------------ip~~~~l~f~v~l~~~~~~~  385 (496)
                      ++|+|||++|||+....     .....                             +++.++|+|+|||++++...
T Consensus        85 ~~~~ipp~laYG~p~v~~~~r~~~~~~~p~~~~~~~~g~~~~~~~~~~g~~d~~~li~~p~~L~FeIELl~Ve~P~  160 (165)
T 2lkn_A           85 AQFLCDIKHVVLYPLVAKSLRNIAVGKDPLEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHMEMLKVESPG  160 (165)
T ss_dssp             EEEECCHHHHSSHHHHHHHHTTGGGSSTTTTTCSCCSSCCSCCCCCCCCCSTTTHHHHSCCCCEEEEEEEEEECTT
T ss_pred             EEEEECHHHhcCCcchhhhhhhccccCCCccccccceeeeeccccccccccccccccCCCCCeEEEEEEEEEcCCc
Confidence            99999999999942100     00011                             23447899999999998643

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.86  E-value=4.7e-21  Score=157.43  Aligned_cols=107  Identities=32%  Similarity=0.597  Sum_probs=97.3

Q ss_pred             ceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcC
Q 011003          271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAP  350 (496)
Q Consensus       271 ~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~  350 (496)
                      ++.++++++|+|...|..||.|.+||.+++.||++|++++.  ...|+.|.+|.+++++||+.+|.+|++||+++|.|||
T Consensus         1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~--~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~ip~   78 (107)
T 2ppn_A            1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRD--RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISP   78 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHH--HTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECG
T ss_pred             CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCCCEEEecCC--CCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEEEECH
Confidence            47899999999955599999999999999999999998743  3479999999999999999999999999999999999


Q ss_pred             CCccCCccccccccCCCCCCeEEEEEEEeeee
Q 011003          351 EYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (496)
Q Consensus       351 ~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~  382 (496)
                      ++|||+.+.+   +.|||+++++|+|+|++++
T Consensus        79 ~~ayG~~~~~---~~Ip~~~~l~f~v~l~~v~  107 (107)
T 2ppn_A           79 DYAYGATGHP---GIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             GGTTTTTCBT---TTBCTTCCEEEEEEEEEEC
T ss_pred             HHccCCCCCC---CCcCCCCeEEEEEEEEEeC
Confidence            9999998764   4699999999999999873

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.85  E-value=4.5e-21  Score=162.04  Aligned_cols=115  Identities=21%  Similarity=0.372  Sum_probs=102.7

Q ss_pred             eccCcceEEEEEecCCC-cCCCCCCCeEEEEEEEEEc-CCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcE
Q 011003          266 ITDDKKVIKKILKEGDG-FERPNEGAVVKVKLIGKLQ-DGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEV  343 (496)
Q Consensus       266 ~~~d~~~~k~il~~G~g-~~~p~~~~~V~v~y~~~~~-~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~  343 (496)
                      .+.+.++.++++++|.+ ...|..+|.|.|||.+++. ||++|++++......|+.|.+|.+++++||+++|.+|++||+
T Consensus         8 ~~~~~gl~~~~l~~g~~~g~~~~~gd~V~v~Y~g~~~~dG~~fdss~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge~   87 (125)
T 4dip_A            8 LIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEK   87 (125)
T ss_dssp             GCCCCCCEEEEEECCSCCSCCCCTTCEEEEEEEEEETTTCCEEEEHHHHTTTCCEEEETTSCSSCHHHHHHSTTCCTTCE
T ss_pred             EECCCCeEEEEEEcCCCCCCcCCCCCEEEEEEEEEECCCCcEEEEcccCCCCcCEEEEeCCCChhHHHHHHHhCCCCCCE
Confidence            35577999999999982 2889999999999999998 999999885322468999999999999999999999999999


Q ss_pred             EEEEEcCCCccCCccccccccCCCCCCeEEEEEEEeeeecc
Q 011003          344 ALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE  384 (496)
Q Consensus       344 ~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~~~  384 (496)
                      +.|.|||++|||+.+.    +.|||+++|+|+|+|+++.+.
T Consensus        88 ~~~~ip~~~aYG~~g~----~~Ip~~~~l~f~vel~~i~~~  124 (125)
T 4dip_A           88 RKLIIPPALGYGKEGK----GKIPPESTLIFNIDLLEIRNG  124 (125)
T ss_dssp             EEEEECGGGTTTTTCB----TTBCTTCCEEEEEEEEEEECC
T ss_pred             EEEEEChHHhcCCCCC----CCCCCCCeEEEEEEEEEEEcC
Confidence            9999999999999875    369999999999999998753

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.85  E-value=9.3e-21  Score=166.88  Aligned_cols=124  Identities=25%  Similarity=0.393  Sum_probs=106.8

Q ss_pred             ccCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEE
Q 011003          267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL  346 (496)
Q Consensus       267 ~~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v  346 (496)
                      +.+++++++++++|+|..+|..||.|.|||.+++.||++|+++..  .+.|+.|.+  +++++||+.+|.+|++||+++|
T Consensus        34 ~~~sGl~~~vl~~G~G~~~~~~gd~V~v~Y~g~l~dG~~fdss~~--~g~p~~f~l--g~vI~G~eeaL~gMk~Ge~~~~  109 (167)
T 1jvw_A           34 KLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRE--RGKPTTFRP--NEVIKGWTEALQLMREGDRWRL  109 (167)
T ss_dssp             ECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHH--HTSCEEECG--GGSCHHHHHHHTTCCTTCEEEE
T ss_pred             ECCCCEEEEEEEcCCCCcCCCCCCEEEEEEEEEECCCCEEeeccc--cCCCEEEEe--CchhHHHHHHHcCCCCCCEEEE
Confidence            456789999999999943499999999999999999999998743  458999998  5899999999999999999999


Q ss_pred             EEcCCCccCCccccccccCCCCCCeEEEEEEEeeeeccccccccChHHHHHHH
Q 011003          347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAA  399 (496)
Q Consensus       347 ~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~~~~~~~~~~~~e~~~~a  399 (496)
                      +|||++|||+.+.+   +.|||+++|+|+|+|+++.+.  .+.++.+|.-+..
T Consensus       110 ~Ip~~laYG~~g~~---~~Ipp~s~LiF~VeL~~i~~~--~~~~~~~e~~~~l  157 (167)
T 1jvw_A          110 FIPYDLAYGVTGGG---GMIPPYSPLEFDVELISIKDG--GKGRTAEEVDEIL  157 (167)
T ss_dssp             EECGGGTTTTTCSS---SSSCTTCCEEEEEEEEEEGGG--CCSCBHHHHHHHH
T ss_pred             EECchhhCCCCCCC---CCcCCCCeEEEEEEEEEEEcC--CCCCCHHHHHHHH
Confidence            99999999998864   579999999999999999853  4556776654433

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.85  E-value=1.6e-20  Score=159.45  Aligned_cols=114  Identities=39%  Similarity=0.641  Sum_probs=101.8

Q ss_pred             eeccCcceEEEEEecC-CC-cCCCCCCCeEEEEEEEEE-cCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccC
Q 011003          265 EITDDKKVIKKILKEG-DG-FERPNEGAVVKVKLIGKL-QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKN  341 (496)
Q Consensus       265 d~~~d~~~~k~il~~G-~g-~~~p~~~~~V~v~y~~~~-~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~G  341 (496)
                      +.+.++.++++++++| .| ...|..||.|.|||.+++ .+|++|+++..  ...|+.|.+|.+++++||+.+|.+|++|
T Consensus        11 ~~~~~g~~~~~il~~G~~g~g~~~~~gd~V~v~Y~g~~~~dG~~fd~s~~--~~~p~~f~lG~g~~i~g~e~~l~gm~~G   88 (129)
T 2vn1_A           11 ELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFD--RNVPFKFHLEQGEVIKGWDICVSSMRKN   88 (129)
T ss_dssp             ECSTTSSEEEEEEECCCCSGGGSCCTTCEEEEEEEEEETTTCCEEEEGGG--TTCCEEEETTSSSSCHHHHHHHTTCCTT
T ss_pred             EECCCCCEEEEEEeCCCCCCCCcCCCCCEEEEEEEEEECCCCeEEEecCC--CCccEEEEeCCCCcCHHHHHHHhCCCCC
Confidence            4456778888999977 55 288999999999999999 79999998743  4689999999999999999999999999


Q ss_pred             cEEEEEEcCCCccCCccccccccCCCCCCeEEEEEEEeeeec
Q 011003          342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (496)
Q Consensus       342 e~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~~  383 (496)
                      |++.|+|||++|||+.+.+   +.|||+++|+|+|+|+++..
T Consensus        89 e~~~v~ip~~~aYG~~~~~---~~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           89 EKCLVRIESMYGYGDEGCG---ESIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             CEEEEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEEC
T ss_pred             CEEEEEEChHHcCCCCCCC---CCcCCCCeEEEEEEEEEEec
Confidence            9999999999999998764   46999999999999999874

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.85  E-value=1.7e-20  Score=156.79  Aligned_cols=112  Identities=29%  Similarity=0.410  Sum_probs=101.9

Q ss_pred             ceeeeccCcceEEEEEecCCCc-CCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhcccc
Q 011003          262 TVSEITDDKKVIKKILKEGDGF-ERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKK  340 (496)
Q Consensus       262 ~~~d~~~d~~~~k~il~~G~g~-~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~  340 (496)
                      .+.+++.++.+.++++++|+|. ..|..++.|++||.+++.+|++|++      ..|+.|.+|.+++++||+.+|.+|++
T Consensus         5 ~~~~~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~~dG~~~ds------~~p~~f~lG~~~~i~g~e~~l~gm~~   78 (118)
T 2awg_A            5 EWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE------EPELVFTLGDCDVIQALDLSVPLMDV   78 (118)
T ss_dssp             CEEESSSSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEECTTSCEEEE------EEEEEEETTSSCSCHHHHHHGGGSCT
T ss_pred             cceEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEEC------CCCEEEEECCCChhHHHHHHHhCCCC
Confidence            3466778888999999999984 3899999999999999999999976      37899999999999999999999999


Q ss_pred             CcEEEEEEcCCCccCCccccccccCCCCCCeEEEEEEEeeee
Q 011003          341 NEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (496)
Q Consensus       341 Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~  382 (496)
                      ||+++|.|||++|||+.+.+   +.|||+++++|+|+|+++.
T Consensus        79 Ge~~~~~ip~~~ayG~~~~~---~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           79 GETAMVTADSKYCYGPQGRS---PYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             TCEEEEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEE
T ss_pred             CCEEEEEEChHHccCCCCCC---CccCCCCeEEEEEEEEEec
Confidence            99999999999999998764   5699999999999999885

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.84  E-value=1.7e-20  Score=159.60  Aligned_cols=110  Identities=34%  Similarity=0.534  Sum_probs=100.7

Q ss_pred             eccCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEE
Q 011003          266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVAL  345 (496)
Q Consensus       266 ~~~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~  345 (496)
                      .+.+.++.++++++|+| ..|..||.|.|+|.+++.||++|++++.  ...|+.|.+|.+++++||+++|.+|++||+++
T Consensus        24 ~~~~~gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~--~~~p~~f~lG~g~vi~G~eeaL~gmk~Ge~~~  100 (133)
T 2y78_A           24 VTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKD--RNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRR  100 (133)
T ss_dssp             EECTTSCEEEEEECCSS-CBCCTTSEEEEEEEEEETTSCEEEETTT--TTCCEEEETTSSSSCHHHHHHSTTCBTTCEEE
T ss_pred             EECCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEeccCc--CCCCEEEEeCCCChhHHHHHHHcCCCCCCEEE
Confidence            34567899999999999 7899999999999999999999998753  46899999999999999999999999999999


Q ss_pred             EEEcCCCccCCccccccccCCCCCCeEEEEEEEeee
Q 011003          346 LTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (496)
Q Consensus       346 v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~  381 (496)
                      |+||+++|||+.+..   ..|||+++|+|+|+|+++
T Consensus       101 v~ip~~~aYG~~~~~---~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A          101 LTIPPQLGYGARGAG---GVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             EEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEC
T ss_pred             EEECcHHhCCCCCCC---CCCCCCCeEEEEEEEEEC
Confidence            999999999998764   469999999999999875

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.84  E-value=1.7e-20  Score=163.34  Aligned_cols=115  Identities=29%  Similarity=0.398  Sum_probs=102.4

Q ss_pred             eeeeccCcceEEEEEecCCCc-CCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccC
Q 011003          263 VSEITDDKKVIKKILKEGDGF-ERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKN  341 (496)
Q Consensus       263 ~~d~~~d~~~~k~il~~G~g~-~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~G  341 (496)
                      +.+.+.++.+.++++++|+|. ..|..||.|+|||.+++.||++|++      ..|+.|.+|.+++++||+.+|.+|++|
T Consensus        36 ~~~~~~sG~v~~~vl~~G~G~~~~p~~gd~V~v~Y~g~l~dG~~fds------~~p~~f~lG~g~vi~G~eeaL~gMk~G  109 (157)
T 2jwx_A           36 WLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE------EPELVFTLGDCDVIQALDLSVPLMDVG  109 (157)
T ss_dssp             CEESSSSSSEEEEEEECCSTTSCCCCTTEEEEEEEEEECTTSCEEEE------EEEEEEETTTTSSCHHHHHHTTTSCTT
T ss_pred             cceECCCCCEEEEEEEccCCCccCCCCCCEEEEEEEEEECCCCEeec------CCCEEEEeCCCChhHHHHHHHcCCCCC
Confidence            345566777789999999993 3899999999999999999999986      379999999999999999999999999


Q ss_pred             cEEEEEEcCCCccCCcc-ccccccCCCCCCeEEEEEEEeeeecccc
Q 011003          342 EVALLTIAPEYAFGSAE-SQQELAVVPPNSTVHYEVELVSFEKEKE  386 (496)
Q Consensus       342 e~~~v~i~~~~~yg~~~-~~~~~~~ip~~~~l~f~v~l~~~~~~~~  386 (496)
                      |+++|+||+++|||+.+ ..   ..|||+++|+|+|+|+++.....
T Consensus       110 e~~~v~IP~~~aYG~~g~~~---~~IPp~stLiF~VeL~~i~~~~~  152 (157)
T 2jwx_A          110 ETAMVTADSKYCYGPQGSRS---PYIPPHAALCLEVTLKTAVDLEH  152 (157)
T ss_dssp             CEEEEEECGGGTTTTTCCSS---SCCCTTCCEEEEEEEEEEEECSC
T ss_pred             CEEEEEECchhcCCcccccC---CCcCCCCeEEEEEEEEEEEcccc
Confidence            99999999999999987 43   56999999999999999986543

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.84  E-value=1.1e-20  Score=153.74  Aligned_cols=95  Identities=53%  Similarity=0.915  Sum_probs=90.2

Q ss_pred             CCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCcccCCCCCCCCCCC
Q 011003           51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP  130 (496)
Q Consensus        51 ~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~  130 (496)
                      ..++.||.|.+||++++.||++|++++.+++|+.|.+|.+++++||+++|.+|++|++++|.|||++|||..+.++.||+
T Consensus         4 ~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~~~~Ip~   83 (102)
T 2pbc_A            4 IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAPPKIPG   83 (102)
T ss_dssp             CCCCTTCEEEEEEEEECTTSCEEEESTTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCBTTTBCT
T ss_pred             CcCCCCCEEEEEEEEEECCCCEEEeCCCCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCCCCcCc
Confidence            67899999999999998899999999876789999999999999999999999999999999999999999988778999


Q ss_pred             CCceEEEEEEEEEee
Q 011003          131 NATLQFDVELLSWTS  145 (496)
Q Consensus       131 ~~~l~~~v~l~~~~~  145 (496)
                      +++++|+|+|+++..
T Consensus        84 ~~~l~f~v~l~~v~~   98 (102)
T 2pbc_A           84 GATLVFEVELLKIER   98 (102)
T ss_dssp             TCCEEEEEEEEEEGG
T ss_pred             CCeEEEEEEEEEecc
Confidence            999999999999865

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=1.4e-20  Score=160.87  Aligned_cols=121  Identities=27%  Similarity=0.360  Sum_probs=107.2

Q ss_pred             eeeeccCcceEEEEEecCCCc-CCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccC
Q 011003          263 VSEITDDKKVIKKILKEGDGF-ERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKN  341 (496)
Q Consensus       263 ~~d~~~d~~~~k~il~~G~g~-~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~G  341 (496)
                      +.+++.++.+.++++++|+|. ..|..|+.|.|||.+++.||++|++      ..|+.|.+|.+++++||+.+|.+|++|
T Consensus        10 ~~~~~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~~~dG~~fds------~~p~~f~lG~g~~i~G~e~~L~gm~~G   83 (135)
T 2d9f_A           10 WLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE------EPELVFTLGDCDVIQALDLSVPLMDVG   83 (135)
T ss_dssp             CEESSSSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEEESSSCEEEE------EEEEEEETTSCCSCTTTTTTGGGSCTT
T ss_pred             CcEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEec------CCCEEEEeCCCChhHHHHHHHhCCCCC
Confidence            456677888999999999993 3899999999999999999999975      479999999999999999999999999


Q ss_pred             cEEEEEEcCCCccCCcc-ccccccCCCCCCeEEEEEEEeeeeccccccccCh
Q 011003          342 EVALLTIAPEYAFGSAE-SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNT  392 (496)
Q Consensus       342 e~~~v~i~~~~~yg~~~-~~~~~~~ip~~~~l~f~v~l~~~~~~~~~~~~~~  392 (496)
                      |+++|+||+++|||+.+ ..   ..|||+++|+|+|+|+++....+...++.
T Consensus        84 e~~~v~ip~~~aYG~~~~~~---~~Ip~~~~l~f~vel~~v~~~~~~e~~s~  132 (135)
T 2d9f_A           84 ETAMVTADSKYCYGPQGSRS---PYIPPHAALCLEVTLKTAVDRPDLEMSGP  132 (135)
T ss_dssp             CEEEEEECHHHHTCTTCCSS---SCCCTTCCEEEEEEEEEEESSCSSSSCCC
T ss_pred             CEEEEEEChhHccCcCCcCC---CccCCCCeEEEEEEEEEeecCCchhhcCc
Confidence            99999999999999987 43   57999999999999999997665554443

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.83  E-value=2.9e-20  Score=157.56  Aligned_cols=108  Identities=34%  Similarity=0.570  Sum_probs=95.9

Q ss_pred             CcceEE--EEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEE
Q 011003          269 DKKVIK--KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL  346 (496)
Q Consensus       269 d~~~~k--~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v  346 (496)
                      +.++.+  +++++|+|...|..||.|.|+|.+++.||++|++++.  .+.|+.|.+|.+++++||+++|.+|++||+++|
T Consensus        21 ~~Gl~~~K~~l~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~--~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v   98 (130)
T 2lgo_A           21 SMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRS--RGKPFQFTLGAGEVIKGWDQGVATMTLGEKALF   98 (130)
T ss_dssp             SSSCCCCEEEEECCCSSCCCCTTSEEEEEEEEECTTSCEEECTTT--TTCCEEEETTSTTSCHHHHHHHHHSCTTEEEEE
T ss_pred             CCceEEEEEEEeccCCCccCCCCCEEEEEEEEEECCCCEEEccCc--CCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEE
Confidence            345544  4999999954499999999999999999999998743  458999999999999999999999999999999


Q ss_pred             EEcCCCccCCccccccccCCCCCCeEEEEEEEeee
Q 011003          347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (496)
Q Consensus       347 ~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~  381 (496)
                      .|||++|||+.+.+   +.|||+++|+|+|+|+++
T Consensus        99 ~ip~~~aYG~~~~~---~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A           99 TIPYQLAYGERGYP---PVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             EECTTTSTTTTCCS---TTSCSSCCEEEEEEEEEC
T ss_pred             EECcHHHCCCCCCC---CCcCCCCeEEEEEEEEEC
Confidence            99999999998764   469999999999999875

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.83  E-value=3.5e-20  Score=169.28  Aligned_cols=105  Identities=26%  Similarity=0.475  Sum_probs=98.0

Q ss_pred             ccCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEE
Q 011003          267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL  346 (496)
Q Consensus       267 ~~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v  346 (496)
                      +.++++.++++++|+| ..|..+|.|+|||.+++.||++||++     +.|+.|.+|  ++++||+.+|.+|++|++++|
T Consensus       114 ~~~sGl~y~vl~~G~G-~~p~~gd~V~V~Y~g~l~dG~vfDss-----~~P~~f~lG--~vI~G~eeaL~gMk~Gek~~v  185 (219)
T 3oe2_A          114 ELADGILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQS-----TQPQWFRLD--SVISGWTSALQNMPTGAKWRL  185 (219)
T ss_dssp             ECGGGCEEEEEECCCS-CCCCTTSEEEEEEEEECTTSCEEEEC-----SSCEEEEGG--GSCHHHHHHHTTCCTTCEEEE
T ss_pred             ECCCCeEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEeecc-----CCcEEEEec--chhHHHHHHHhCCCCCCEEEE
Confidence            4577899999999999 78999999999999999999999986     689999998  899999999999999999999


Q ss_pred             EEcCCCccCCccccccccCCCCCCeEEEEEEEeeee
Q 011003          347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (496)
Q Consensus       347 ~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~  382 (496)
                      +|||++|||+.+.+   +.|||+++|+|+|+|+++.
T Consensus       186 ~IPp~lAYG~~g~~---~~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          186 VIPSDQAYGAEGAG---DLIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             EECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEE
T ss_pred             EECchhcCCCCCCC---CCCCCCCeEEEEEEEEEEe
Confidence            99999999999875   4699999999999999986

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.82  E-value=2.2e-19  Score=164.50  Aligned_cols=111  Identities=33%  Similarity=0.526  Sum_probs=102.1

Q ss_pred             eeccCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEE
Q 011003          265 EITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVA  344 (496)
Q Consensus       265 d~~~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~  344 (496)
                      ..+.++++.++++++|+| ..|..|+.|.+||.+++.||++|++++.  .+.|+.|.+|.+++++||+.+|.+|++||++
T Consensus        99 ~~~~~sGl~~~vl~~G~G-~~~~~gd~V~v~Y~g~l~dG~~fdss~~--~~~P~~f~lG~g~vi~G~eeaL~gM~~Ge~~  175 (209)
T 3uf8_A           99 VVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKD--RNDPFAFVLGGGMVIKGWDEGVQGMKVGGVR  175 (209)
T ss_dssp             CEECTTSCEEEEEECCCS-CBCCTTCEEEEEEEEEETTSCEEEESGG--GTCCEEEETTSSSSCHHHHHHHTTCBTTCEE
T ss_pred             ccCCCCceEEEEEEcCCC-CcCCCCCEEEEEEEEEECCCCEEEEccc--cCCCEEEEeCCCccchhHHHHHhCCCCCCEE
Confidence            445678999999999999 6799999999999999999999998753  5789999999999999999999999999999


Q ss_pred             EEEEcCCCccCCccccccccCCCCCCeEEEEEEEeee
Q 011003          345 LLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (496)
Q Consensus       345 ~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~  381 (496)
                      +|+|||++|||+.+..   +.|||+++|+|+|+|+++
T Consensus       176 ~v~Ipp~~aYG~~g~~---~~IP~~s~LvF~VeL~~I  209 (209)
T 3uf8_A          176 RLTIPPQLGYGARGAA---GVIPPNATLVFEVELLDV  209 (209)
T ss_dssp             EEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEC
T ss_pred             EEEECcHHhCCCCCCC---CCcCCCCeEEEEEEEEEC
Confidence            9999999999998875   469999999999999875

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.81  E-value=1.8e-19  Score=164.77  Aligned_cols=110  Identities=25%  Similarity=0.435  Sum_probs=99.8

Q ss_pred             eccCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEE
Q 011003          266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVAL  345 (496)
Q Consensus       266 ~~~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~  345 (496)
                      .+.+.++.++++++|+| ..|..||.|+|||.+++.||++|++++.  .+.|+.|.+  +++++||+.+|.+|++||+++
T Consensus       102 ~~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~--~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~  176 (213)
T 1fd9_A          102 VVLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEK--TGKPATFQV--SQVIPGWTEALQLMPAGSTWE  176 (213)
T ss_dssp             EECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHH--HCSCEEEEG--GGSCHHHHHHHTTCCTTCEEE
T ss_pred             EECCCccEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEEeeccc--cCCCEEEEc--CchhhHHHHHHcCCCCCCEEE
Confidence            34567899999999999 8899999999999999999999998743  458999999  589999999999999999999


Q ss_pred             EEEcCCCccCCccccccccCCCCCCeEEEEEEEeeeec
Q 011003          346 LTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (496)
Q Consensus       346 v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~~  383 (496)
                      |+|||++|||+.+.+   +.|||+++|+|+|+|+++.+
T Consensus       177 v~IP~~laYG~~g~~---~~Ipp~stLiF~VeLl~v~~  211 (213)
T 1fd9_A          177 IYVPSGLAYGPRSVG---GPIGPNETLIFKIHLISVKK  211 (213)
T ss_dssp             EEECGGGTTTTCCCS---SSCCTTCCEEEEEEEEEEEC
T ss_pred             EEECchhccCccCCC---CCCCCCCeEEEEEEEEEEEc
Confidence            999999999998764   56999999999999999874

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.81  E-value=1.3e-19  Score=153.66  Aligned_cols=112  Identities=23%  Similarity=0.413  Sum_probs=99.4

Q ss_pred             ccCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhc------ccc
Q 011003          267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVIT------MKK  340 (496)
Q Consensus       267 ~~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~------M~~  340 (496)
                      +.+.++.++++++|+| ..|..||.|.|||.+++.||++|++++.  ...|+.|.+|.+++++||+.+|.+      |++
T Consensus         9 ~~~~Gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~--~~~p~~f~lG~~~~i~G~~~~L~G~~~~~~m~~   85 (129)
T 1u79_A            9 VSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYN--RGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLT   85 (129)
T ss_dssp             ECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHH--HTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBT
T ss_pred             ECCCCeEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEEecCC--CCCCEEEEeCCCCccHHHHHHhcccccccccCC
Confidence            3467899999999999 7899999999999999999999998742  357999999999999999999998      999


Q ss_pred             CcEEEEEEcCCCccCCccccc--cccCCCCCCeEEEEEEEeee
Q 011003          341 NEVALLTIAPEYAFGSAESQQ--ELAVVPPNSTVHYEVELVSF  381 (496)
Q Consensus       341 Ge~~~v~i~~~~~yg~~~~~~--~~~~ip~~~~l~f~v~l~~~  381 (496)
                      ||+++|.|||++|||+.+...  ....|||+++|+|+|+|+++
T Consensus        86 Ge~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           86 GGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             TCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             CCEEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            999999999999999987531  01469999999999999976

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=99.80  E-value=3.8e-20  Score=162.29  Aligned_cols=133  Identities=22%  Similarity=0.325  Sum_probs=99.2

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCcccCCCCCCCCCCCC
Q 011003           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (496)
Q Consensus        52 ~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~  131 (496)
                      .+++||.|.+||++++.||++|++|+.+++|+.|.+|.+++++||+++|.+|++|++++|.|||++|||.++        
T Consensus        24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~--------   95 (169)
T 4dt4_A           24 SVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPS--------   95 (169)
T ss_dssp             SCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCCC--------
T ss_pred             cCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC--------
Confidence            589999999999999999999999987668999999999999999999999999999999999999999987        


Q ss_pred             CceEEEEEEEEEeecceeccCccceeEeeeccc---cccCCCCCCeEEEEEEEEeCCCceeeecc
Q 011003          132 ATLQFDVELLSWTSVKDICKDGGIIKKILKEGE---KWENPKDLDEVLVNYEARLEDGMVVGKAD  193 (496)
Q Consensus       132 ~~l~~~v~l~~~~~~~~~~~d~~~~k~i~~~g~---g~~~~~~~d~V~v~y~~~~~~g~~~~~~~  193 (496)
                      ..+++.+..-.+.....+. .|.++.--...|.   +..+...++.|++|+||+||+.++.|.-+
T Consensus        96 ~~lv~~vp~~~f~~~~~~~-~G~~~~~~~~~G~~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~ve  159 (169)
T 4dt4_A           96 PDLIQYFSRREFMDAGEPE-IGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIE  159 (169)
T ss_dssp             GGGEEEEEGGGGTTTCCCC-TTCEEEEECTTSCEEEEEEEEEETTEEEEECSCTTTTCCEEEEEE
T ss_pred             hHHEEEeCHHHCCCcCCCC-CCcEEEEECCCCCEEEEEEEEEcCCEEEEeCCCccCCCEEEEEEE
Confidence            4555555544332111110 1111110011111   12223345899999999999999988754

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.80  E-value=4e-19  Score=176.65  Aligned_cols=254  Identities=21%  Similarity=0.302  Sum_probs=181.1

Q ss_pred             ceeccCccceeEeeeccccccCCCCCCeEEEEEEEEeCCCceeeeccceEEEecCCC---CcchHHHHHhccccCcEEEE
Q 011003          147 KDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGH---FCPTLAKAVKTMKKGEKVLL  223 (496)
Q Consensus       147 ~~~~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~~g~~~---~~~gl~~~l~~m~~ge~~~v  223 (496)
                      .+++.++++.++|+..|.|..+|..++.|+|||++++ +|++|+++ ++.|.+|.|.   ++++|+.+|.+|++||++.+
T Consensus        19 ~~~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~-~g~~fd~~-~~~f~lG~g~~~~~~~~~e~al~~~~~Ge~~~l   96 (336)
T 1p5q_A           19 SHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQR-ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIV   96 (336)
T ss_dssp             ---CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEE-TTEEEEEE-EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEE
T ss_pred             eeecCCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE-CCEEEecC-CeEEEeCCCCccccchHHHHHHhcCCCCCeEEE
Confidence            4556789999999999999889999999999999999 89998876 8999999886   58899999999999999999


Q ss_pred             EecCCCccCCCCCCCCCCCCCCCCCceEEEEEEeeeecceeeeccCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCC
Q 011003          224 AVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDG  303 (496)
Q Consensus       224 ~vp~~~~~g~~~~~~~~~~~~i~~~~~l~~ev~l~~~~~~~d~~~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g  303 (496)
                      .++|+++||..+...    ..||+++++.|++.+.++..-.......      +.     ..|....   .    +..-|
T Consensus        97 ~i~p~~ayg~~g~~~----~~i~~~~~l~f~~~L~~~~~A~~~~~~a------~~-----~~p~~a~---~----~~~~g  154 (336)
T 1p5q_A           97 YLKPSYAFGSVGKEK----FQIPPNAELKYELHLKSFEKAKESWEMN------SE-----EKLEQST---I----VKERG  154 (336)
T ss_dssp             EECTTTTTTTTCBGG----GTBCSSCCEEEEEEEEEEECCCCGGGCC------HH-----HHHHHHH---H----HHHHH
T ss_pred             EECCccccCcCCCCc----cCCCCCCeEEEEEEEeecccccchhcCC------HH-----HHHHHHH---H----HHHHH
Confidence            999999999988741    2588999999999999886322211100      00     0000000   0    00000


Q ss_pred             cEEEEcCCCCCcccEEEEcCc-cchhhHHHHHHhccccCcEEEEEEcCCCccCCccccccccCCCCCCeEEEEEEEeeee
Q 011003          304 TVFVKKGHSEEEQLFEFKTDE-EQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (496)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~lg~-~~~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~  382 (496)
                      ..             -+..|+ ...+..++.++.....                            ...         +.
T Consensus       155 ~~-------------~~~~g~~~~A~~~y~~Al~~~p~----------------------------~~~---------~~  184 (336)
T 1p5q_A          155 TV-------------YFKEGKYKQALLQYKKIVSWLEY----------------------------ESS---------FS  184 (336)
T ss_dssp             HH-------------HHHHTCHHHHHHHHHHHHHHTTT----------------------------CCC---------CC
T ss_pred             HH-------------HHHCCCHHHHHHHHHHHHHHhhc----------------------------ccc---------CC
Confidence            00             011111 1234445555543210                            000         00


Q ss_pred             ccccccccChHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhcc
Q 011003          383 KEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK  462 (496)
Q Consensus       383 ~~~~~~~~~~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~  462 (496)
                           .....+.....+..+...|..+++.|+|.+|+..|++|+++-+               ....+|.|+|.||++++
T Consensus       185 -----~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~a~~~lg~~~~~~g  244 (336)
T 1p5q_A          185 -----NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS---------------NNEKGLSRRGEAHLAVN  244 (336)
T ss_dssp             -----SHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHTT
T ss_pred             -----hHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CcHHHHHHHHHHHHHCC
Confidence                 0000111223456778899999999999999999999999843               33778999999999999


Q ss_pred             CHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003          463 DYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       463 ~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~  494 (496)
                      +|.+|+.++++||+++|++..+++.+|.++..
T Consensus       245 ~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~  276 (336)
T 1p5q_A          245 DFELARADFQKVLQLYPNNKAAKTQLAVCQQR  276 (336)
T ss_dssp             CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999887653

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=99.79  E-value=6.6e-20  Score=168.58  Aligned_cols=167  Identities=24%  Similarity=0.333  Sum_probs=116.4

Q ss_pred             CCCCCEEEEEEEEEEcCCCEEEeecCC-------------CccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCccc
Q 011003           53 PENGDEVEVHYTGTLLDGTQFDSSRDR-------------STPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAY  119 (496)
Q Consensus        53 ~~~gd~V~v~Y~~~~~dg~~~~~t~~~-------------~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ay  119 (496)
                      ++.||.|.+||++++ ||++|++|+..             +.|+.|.+|.++++|||+++|.+|++|++++|.|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~AY   80 (231)
T 3prb_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (231)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHHhc
Confidence            679999999999999 99999999752             3799999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCceEEEEEEEEEeecceecc-CccceeEeeecc-ccccCCCCCCeEEEEEEEEeCCCceeeeccceEE
Q 011003          120 GESGSPPTIPPNATLQFDVELLSWTSVKDICK-DGGIIKKILKEG-EKWENPKDLDEVLVNYEARLEDGMVVGKADGVEF  197 (496)
Q Consensus       120 g~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~-d~~~~k~i~~~g-~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~  197 (496)
                      |.++.        .++..+..-.+... ++.. .|..+.   ..+ .|..+...++.|++|+||+|||.++.|.-+-+..
T Consensus        81 Ge~~~--------~lv~~vp~~~f~~~-~~~~~vG~~~~---~~~~~g~V~~v~~~~V~vD~NHPLAGk~L~F~vev~~v  148 (231)
T 3prb_A           81 GKRDP--------SKIKLIPLSEFTKR-GIKPIKGLTIT---IDGIPGKIVSINSGRVLVDFNHELAGKEVKYRIKIEEV  148 (231)
T ss_dssp             CCCCG--------GGEEEEETHHHHTT-TCCCCTTCEEE---ETTEEEEEEEEETTEEEEECSCTTTTCCEEEEEEEEEE
T ss_pred             CCCCh--------HHEEecCHHHCCcc-cCCCCCCcEEE---ecCCCEEEEEEcCCEEEEeCCCccCCCEEEEEEEEEEE
Confidence            99873        44444443333210 1110 111111   111 2333444568999999999999999987654444


Q ss_pred             EecCCCCcchHHHHHh----ccc---cCcEEEEEecCCCccC
Q 011003          198 TVKDGHFCPTLAKAVK----TMK---KGEKVLLAVKPQYGFG  232 (496)
Q Consensus       198 ~~g~~~~~~gl~~~l~----~m~---~ge~~~v~vp~~~~~g  232 (496)
                      .-....-+.++-.-..    .|.   .++.+.|.+|+++.|-
T Consensus       149 ~eat~eei~~~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~~  190 (231)
T 3prb_A          149 VDDKKNIVKEIVKMYVPRLSDVKVTIRNGTVKIELPEFAPFI  190 (231)
T ss_dssp             CCSHHHHHHHHHHHHCTTCCCCEEEEETTEEEEECCTTGGGS
T ss_pred             ecCCHHHHHHHHHHhcCCccceEEEEeCCeEEEEcCHHHhhh
Confidence            3333333333333222    233   3678999999986653

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.79  E-value=1e-18  Score=160.89  Aligned_cols=106  Identities=30%  Similarity=0.535  Sum_probs=96.9

Q ss_pred             cCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEE
Q 011003          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT  347 (496)
Q Consensus       268 ~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~  347 (496)
                      .++++.++++++|+| ..|..||.|+|||.+++.||++|++++.  .+.|+.|.+  +++++||+.+|.+|++||+++|+
T Consensus       119 ~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~--~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v~  193 (224)
T 1q6h_A          119 SSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYT--RGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLV  193 (224)
T ss_dssp             CTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGG--GTSCEEEEG--GGSCHHHHHHGGGSCTTCEEEEE
T ss_pred             CCCceEEEEEecccC-ccccCCCEEEEEEEEEeCCCCEEeeccc--cCCCEEEEc--CCcchhHHHHHcCCCCCCEEEEE
Confidence            467899999999999 7899999999999999999999999854  458999998  58999999999999999999999


Q ss_pred             EcCCCccCCccccccccCCCCCCeEEEEEEEeeee
Q 011003          348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (496)
Q Consensus       348 i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~  382 (496)
                      |||+++||..+.+    .|||+++|+|+|+|+++.
T Consensus       194 IP~~laYG~~g~~----~IPp~stLiF~VeL~~ik  224 (224)
T 1q6h_A          194 IPPELAYGKAGVP----GIPPNSTLVFDVELLDVK  224 (224)
T ss_dssp             ECGGGTTTTTCBT----TBCTTCCEEEEEEEEEEC
T ss_pred             ECchhhcCcCCCC----CCCCCCEEEEEEEEEEeC
Confidence            9999999998764    399999999999999873

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=99.79  E-value=4.5e-19  Score=153.87  Aligned_cols=133  Identities=17%  Similarity=0.238  Sum_probs=99.8

Q ss_pred             CCCCCCCEEEEEEEEEEc-CCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCcccCCCCCCCCCC
Q 011003           51 DTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIP  129 (496)
Q Consensus        51 ~~~~~gd~V~v~Y~~~~~-dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip  129 (496)
                      +.++.||.|++||++++. ||++|++|+.. .|+.|.+|.++++|||+++|.+|++|++++|.|||++|||.++      
T Consensus         5 ~~i~~gd~V~v~Y~g~~~~dG~~fdss~~~-~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~------   77 (151)
T 2kr7_A            5 DLESIKQAALIEYEVREQGSSIVLDSNISK-EPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYE------   77 (151)
T ss_dssp             CCTTSCCEEEEEEEEEESSCSCEEEESTTT-CCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSC------
T ss_pred             cCCCCCCEEEEEEEEEECCCCCEEEeCCCC-cCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCCC------
Confidence            468899999999999988 99999999863 7999999999999999999999999999999999999999887      


Q ss_pred             CCCceEEEEEEEEEeecceeccCccceeEeeecc---ccccCCCCCCeEEEEEEEEeCCCceeeeccc
Q 011003          130 PNATLQFDVELLSWTSVKDICKDGGIIKKILKEG---EKWENPKDLDEVLVNYEARLEDGMVVGKADG  194 (496)
Q Consensus       130 ~~~~l~~~v~l~~~~~~~~~~~d~~~~k~i~~~g---~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~  194 (496)
                        ..+++.+....+ ....+ ..|..+.--...|   .+..+...++.|++|+||+|||.++.|.-+-
T Consensus        78 --~~~v~~v~~~~f-~~~~~-~~G~~~~~~~~~G~~~~~~V~~v~~~~v~vD~NHPLAG~~L~F~v~v  141 (151)
T 2kr7_A           78 --SSYLQEVPRDQF-EGIEL-EKGMSVFGQTEDNQTIQAIIKDFSATHVMVDYNHPLAGKTLAFRFKV  141 (151)
T ss_dssp             --SCEEEEEEGGGG-TTSCC-CTTCEEEEEETTTEEEEEEEEEECSSEEEEEECCTTSCCCEEEEEEE
T ss_pred             --cceEEEEcHHHc-CCCCC-ccCCEEEEECCCCCEEEEEEEEECCCEEEEECCCcCCCCEEEEEEEE
Confidence              456666665444 11111 1111111111111   1112334558999999999999999887543

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=99.78  E-value=1e-19  Score=158.09  Aligned_cols=130  Identities=27%  Similarity=0.390  Sum_probs=98.0

Q ss_pred             CCCCCEEEEEEEEEEcCCCEEEeecCC-------------CccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCccc
Q 011003           53 PENGDEVEVHYTGTLLDGTQFDSSRDR-------------STPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAY  119 (496)
Q Consensus        53 ~~~gd~V~v~Y~~~~~dg~~~~~t~~~-------------~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ay  119 (496)
                      +++||.|++||++++ ||++|++|+..             +.|+.|.+|.++++|||++||.+|++|++++|.|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aY   80 (157)
T 3pr9_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (157)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHHhc
Confidence            689999999999999 99999999752             3799999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCceEEEEEEEEEeecceecc-CccceeEeeecc-ccccCCCCCCeEEEEEEEEeCCCceeeeccce
Q 011003          120 GESGSPPTIPPNATLQFDVELLSWTSVKDICK-DGGIIKKILKEG-EKWENPKDLDEVLVNYEARLEDGMVVGKADGV  195 (496)
Q Consensus       120 g~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~-d~~~~k~i~~~g-~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~~  195 (496)
                      |.++        ..++..+..-.+... ++.. .|..+   ...+ .|..+...++.|++|+||+||+.++.|.-+-+
T Consensus        81 G~~~--------~~~V~~v~~~~f~~~-~~~~~~G~~~---~~~~~~~~V~~v~~~~V~vD~NHPLAG~~L~F~v~v~  146 (157)
T 3pr9_A           81 GKRD--------PSKIKLIPLSEFTKR-GIKPIKGLTI---TIDGIPGKIVSINSGRVLVDFNHELAGKEVKYRIKIE  146 (157)
T ss_dssp             CCCC--------GGGEEEEEHHHHHHT-TCCCCTTCEE---EETTEEEEEEEEETTEEEEECSCTTTTCCEEEEEEEE
T ss_pred             CCCC--------hHhEEEcCHHHCCcc-cCCcCCCcEE---EecCCCeEEEEEcCCEEEEECCCccCCCeEEEEEEEE
Confidence            9987        345555544333210 1111 11111   1111 23344445689999999999999998876533

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.78  E-value=1e-18  Score=142.03  Aligned_cols=96  Identities=31%  Similarity=0.518  Sum_probs=88.1

Q ss_pred             CCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCCccCCccccccc
Q 011003          284 ERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQEL  363 (496)
Q Consensus       284 ~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~  363 (496)
                      ..|..||.|+|||.+++.||++|++++.  ...|+.|.+|.+++++||+.+|.+|++||+++|.||+++|||+.+..   
T Consensus         4 ~~~~~gd~V~v~y~~~~~dG~~~d~s~~--~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~~---   78 (102)
T 2pbc_A            4 IKSRKGDVLHMHYTGKLEDGTEFDSSLP--QNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAP---   78 (102)
T ss_dssp             CCCCTTCEEEEEEEEECTTSCEEEESTT--TTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCBT---
T ss_pred             CcCCCCCEEEEEEEEEECCCCEEEeCCC--CCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCC---
Confidence            6789999999999999999999998743  46899999999999999999999999999999999999999998764   


Q ss_pred             cCCCCCCeEEEEEEEeeeecc
Q 011003          364 AVVPPNSTVHYEVELVSFEKE  384 (496)
Q Consensus       364 ~~ip~~~~l~f~v~l~~~~~~  384 (496)
                      +.||++++++|+|+|+++...
T Consensus        79 ~~Ip~~~~l~f~v~l~~v~~~   99 (102)
T 2pbc_A           79 PKIPGGATLVFEVELLKIERR   99 (102)
T ss_dssp             TTBCTTCCEEEEEEEEEEGGG
T ss_pred             CCcCcCCeEEEEEEEEEeccc
Confidence            469999999999999999753

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=99.77  E-value=4e-20  Score=160.47  Aligned_cols=129  Identities=25%  Similarity=0.421  Sum_probs=95.8

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEEeecC-------------CCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCcc
Q 011003           52 TPENGDEVEVHYTGTLLDGTQFDSSRD-------------RSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA  118 (496)
Q Consensus        52 ~~~~gd~V~v~Y~~~~~dg~~~~~t~~-------------~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~a  118 (496)
                      +++.||.|++||++++.||++|++|+.             ...|+.|.+|.+++++||+++|.+|++|++++|.|||++|
T Consensus         1 ~i~~gd~V~v~Y~g~~~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~a   80 (151)
T 1ix5_A            1 MVDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKA   80 (151)
T ss_dssp             CCCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTS
T ss_pred             CCCCCCEEEEEEEEEECCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHHH
Confidence            368999999999999889999999963             2379999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCceEEEEEEEEEeec-ceeccCccceeEeeec-cccccCCCCCCeEEEEEEEEeCCCceeeec
Q 011003          119 YGESGSPPTIPPNATLQFDVELLSWTSV-KDICKDGGIIKKILKE-GEKWENPKDLDEVLVNYEARLEDGMVVGKA  192 (496)
Q Consensus       119 yg~~~~~~~ip~~~~l~~~v~l~~~~~~-~~~~~d~~~~k~i~~~-g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~  192 (496)
                      ||.++        ..+++.+.+..+... ..+. .+..   +... -.+..+...++.|++||||+|||.++.|.-
T Consensus        81 YG~~~--------~~~v~~v~~~~f~~~~~~~~-~G~~---~~~~~~~~~V~~v~~~~v~vD~NHPLAG~~L~F~v  144 (151)
T 1ix5_A           81 YGNRN--------EMLIQKIPRDAFKEADFEPE-EGMV---ILAEGIPATITEVTDNEVTLDFNHELAGKDLVFTI  144 (151)
T ss_dssp             SCSCC--------STTBCCEETHHHHTSTTCCC-TTEE---EESSSCEEEEEEEETTEEEEECCCSSTTCCEEEEC
T ss_pred             CCCCC--------ccEEEEEEHHHcCccCCccc-ccCE---EEECCeEEEEEEEcCCEEEEeCCCCCCCCeEEEEE
Confidence            99877        345555555444210 0110 1111   1000 111122334589999999999999998864

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=99.76  E-value=6.1e-19  Score=158.60  Aligned_cols=132  Identities=18%  Similarity=0.207  Sum_probs=98.8

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCcccCCCCCCCCCCCC
Q 011003           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (496)
Q Consensus        52 ~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~  131 (496)
                      ++++||.|+|+|++++.||++|++|+.. +|+.|.+|.++++|||+++|.+|++|++++|.|||++|||.++.       
T Consensus         2 ~i~~gd~V~v~Y~g~~~dG~~fdss~~~-~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~-------   73 (196)
T 2kfw_A            2 KVAKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDE-------   73 (196)
T ss_dssp             CCCSSCEEEEEEEEEETTTEEEEECCTT-SCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCCT-------
T ss_pred             CCCCCCEEEEEEEEEECCCCEEEecCCC-CCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCCh-------
Confidence            3689999999999998899999999864 79999999999999999999999999999999999999998773       


Q ss_pred             CceEEEEEEEEEeecceeccCccceeEeeecc--ccccCCCCCCeEEEEEEEEeCCCceeeecc
Q 011003          132 ATLQFDVELLSWTSVKDICKDGGIIKKILKEG--EKWENPKDLDEVLVNYEARLEDGMVVGKAD  193 (496)
Q Consensus       132 ~~l~~~v~l~~~~~~~~~~~d~~~~k~i~~~g--~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~  193 (496)
                       .+++.|.+..+.....+. .+.++.-....|  .+..+...++.|++||||+||+.++.|+-+
T Consensus        74 -~lV~~vp~~~f~~~~~~~-~G~~~~~~~~~G~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~ve  135 (196)
T 2kfw_A           74 -NLVQRVPKDVFMGVDELQ-VGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVE  135 (196)
T ss_dssp             -TTCEEECGGGCCCSSCCC-TTCEEEEEETTEEEEEEBCCCCSSSEEECCCCTTSCCCCEEEEE
T ss_pred             -hhEEEEEHHHCCCccCcc-cCCEEEEECCCCcEEEEEEEEcCCEEEEeCCCCCCCCeEEEEEE
Confidence             344555444342111111 111111111111  122455567999999999999999988754

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=99.75  E-value=3.1e-18  Score=151.03  Aligned_cols=135  Identities=19%  Similarity=0.205  Sum_probs=97.9

Q ss_pred             CCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCcccCCCCCCCCCCCCC
Q 011003           53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNA  132 (496)
Q Consensus        53 ~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~~  132 (496)
                      ++.||.|+++|++++.||++|++|+.. +|+.|.+|.++++|||+++|.+|++|++++|.|||++|||.++.        
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~~-~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~--------   73 (171)
T 2k8i_A            3 VAKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDE--------   73 (171)
T ss_dssp             CCTTEEEEEEEEEEETTSCEEEECCSS-SCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCCT--------
T ss_pred             CCCCCEEEEEEEEEECCCCEEeeccCC-cCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCCh--------
Confidence            689999999999998899999999864 79999999999999999999999999999999999999998873        


Q ss_pred             ceEEEEEEEEEeecceeccCccceeEeeecc--ccccCCCCCCeEEEEEEEEeCCCceeeeccceEE
Q 011003          133 TLQFDVELLSWTSVKDICKDGGIIKKILKEG--EKWENPKDLDEVLVNYEARLEDGMVVGKADGVEF  197 (496)
Q Consensus       133 ~l~~~v~l~~~~~~~~~~~d~~~~k~i~~~g--~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~  197 (496)
                      .+++.+....+.....+. .+..+.-....|  .+..+...++.|++|+||+||+.++.|.-+-+..
T Consensus        74 ~~v~~v~~~~f~~~~~~~-~G~~~~~~~~~G~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~vev~~v  139 (171)
T 2k8i_A           74 NLVQRVPKDVFMGVDELQ-VGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVVAI  139 (171)
T ss_dssp             TSEEEEEGGGGTTSSCCC-TTCEEEEEETTEEEEEEEEEECSSEEEEESCCSSCCCEEEEEEEEEEE
T ss_pred             hhEEEeeHHHCCcccCcc-CCcEEEEECCCCcEEEEEEEEcCCEEEEeCCCCCCCCeEEEEEEEEEe
Confidence            445555443332110111 111111000011  0112223458999999999999999988654433

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=99.70  E-value=1.3e-17  Score=145.25  Aligned_cols=130  Identities=20%  Similarity=0.262  Sum_probs=97.2

Q ss_pred             CCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCcccCCCCCCCCCCCCC
Q 011003           53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNA  132 (496)
Q Consensus        53 ~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~~  132 (496)
                      ++.||.|++||+++ .||++|++|+     +.|.+|.++++|||+++|.+|++|++++|.|||++|||.++        .
T Consensus         3 i~~gd~V~v~Y~g~-~dG~~fdss~-----~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~--------~   68 (158)
T 3cgm_A            3 VGQDKVVTIRYTLQ-VEGEVLDQGE-----LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHD--------P   68 (158)
T ss_dssp             CCTTEEEEEEEEEE-ETTEEEEEEE-----EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTCCCC--------G
T ss_pred             CCCCCEEEEEEEEE-ECCEEEEeeE-----EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcCCCC--------c
Confidence            67999999999999 8999999987     89999999999999999999999999999999999999876        5


Q ss_pred             ceEEEEEEEEEeecceeccCccceeEeeeccc---cccCCCCCCeEEEEEEEEeCCCceeeeccceEE
Q 011003          133 TLQFDVELLSWTSVKDICKDGGIIKKILKEGE---KWENPKDLDEVLVNYEARLEDGMVVGKADGVEF  197 (496)
Q Consensus       133 ~l~~~v~l~~~~~~~~~~~d~~~~k~i~~~g~---g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~  197 (496)
                      .+++.+.+..+.....+. .|..+.--...|.   +..+...++.|++|+||+||+.++.|.-+-+..
T Consensus        69 ~lv~~v~~~~f~~~~~~~-~G~~~~~~~~~G~~~~~~V~~v~~~~v~vD~NHPLAGk~L~F~vev~~v  135 (158)
T 3cgm_A           69 EGVQVVPLSAFPEDAEVV-PGAQFYAQDMEGNPMPLTVVAVEGEEVTVDFNHPLAGKDLDFQVEVVKV  135 (158)
T ss_dssp             GGEEEEEGGGSCTTSCCC-TTCEEEEEETTTEEEEEEEEEEETTEEEEECSCTTTTCCEEEEEEEEEE
T ss_pred             ceEEEEEHHHCCCCCCCc-cCCEEEEECCCCCEEEEEEEEECCCEEEEeCCccccCCEEEEEEEEEEe
Confidence            677777765553211111 1111111111111   112333458999999999999999987654433

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=99.62  E-value=4.5e-16  Score=127.98  Aligned_cols=91  Identities=21%  Similarity=0.407  Sum_probs=75.3

Q ss_pred             EEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCcccCCCC
Q 011003           44 VKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESG  123 (496)
Q Consensus        44 l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ayg~~~  123 (496)
                      +++-++ +.++.||.|.+||++++ ||++|+++.  ++|+.|.+|.++++|||+++|.+|++|++++|.||+...||..+
T Consensus        22 ~~~v~~-~~~~~gD~V~v~Y~g~~-dG~~fdss~--~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~Yg~~~   97 (113)
T 1hxv_A           22 MVDVSD-KKLANGDIAIIDFTGIV-DNKKLASAS--AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKE   97 (113)
T ss_dssp             --------CCCSSEEEEEEEEEEE-TTEECSTTC--CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSG
T ss_pred             EEecCC-CCCCCCCEEEEEEEEEE-CCEEcccCC--ccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchhhCcCC
Confidence            333335 57899999999999998 999999986  48999999999999999999999999999999997333499766


Q ss_pred             CCCCCCCCCceEEEEEEEEE
Q 011003          124 SPPTIPPNATLQFDVELLSW  143 (496)
Q Consensus       124 ~~~~ip~~~~l~~~v~l~~~  143 (496)
                      .     ++++++|+|+|+++
T Consensus        98 ~-----~g~~l~F~V~l~~V  112 (113)
T 1hxv_A           98 L-----QSKPVTFEVVLKAI  112 (113)
T ss_dssp             G-----GSCCCEEEEEECCB
T ss_pred             C-----CCCEEEEEEEEEEE
Confidence            3     57999999999876

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=99.55  E-value=1.3e-14  Score=127.19  Aligned_cols=73  Identities=21%  Similarity=0.376  Sum_probs=67.2

Q ss_pred             CCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCCccCCccc
Q 011003          285 RPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAES  359 (496)
Q Consensus       285 ~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~  359 (496)
                      .+..|+.|+|||.+++.||++||+++.  .+.|+.|.+|.+++++||+++|.+|++||++.|.|||++|||+.+.
T Consensus        24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~--~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~   96 (169)
T 4dt4_A           24 SVQSNSAVLVHFTLKLDDGTTAESTRN--NGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSP   96 (169)
T ss_dssp             SCCTTCEEEEEEEEEETTSCEEEEHHH--HTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCCCG
T ss_pred             cCCCCCEEEEEEEEEECCCCEEEecCC--CCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh
Confidence            578899999999999999999998743  3589999999999999999999999999999999999999998653

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=99.53  E-value=3.2e-14  Score=123.41  Aligned_cols=73  Identities=29%  Similarity=0.439  Sum_probs=65.1

Q ss_pred             CCCCCeEEEEEEEEEcCCcEEEEcCCC-----------CCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCCcc
Q 011003          286 PNEGAVVKVKLIGKLQDGTVFVKKGHS-----------EEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAF  354 (496)
Q Consensus       286 p~~~~~V~v~y~~~~~~g~~~~~~~~~-----------~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~~y  354 (496)
                      ...|+.|+|||++++ +|++||+++..           ....|+.|.+|.+++++||+++|.+|++||+++|.|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aY   80 (157)
T 3pr9_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (157)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHHhc
Confidence            467999999999999 99999987531           113799999999999999999999999999999999999999


Q ss_pred             CCccc
Q 011003          355 GSAES  359 (496)
Q Consensus       355 g~~~~  359 (496)
                      |+.+.
T Consensus        81 G~~~~   85 (157)
T 3pr9_A           81 GKRDP   85 (157)
T ss_dssp             CCCCG
T ss_pred             CCCCh
Confidence            99764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.52  E-value=1.2e-14  Score=127.85  Aligned_cols=104  Identities=17%  Similarity=0.308  Sum_probs=90.3

Q ss_pred             hHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccC---CCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHH
Q 011003          392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD---TSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAE  468 (496)
Q Consensus       392 ~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~---~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai  468 (496)
                      .+++++.+..++.+|+.+|+.|+|.+|+..|++|++++...   ....+++...+.+....+|+|+|.||+++++|.+|+
T Consensus         4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~   83 (162)
T 3rkv_A            4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE   83 (162)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            45788999999999999999999999999999999986542   233445666778899999999999999999999999


Q ss_pred             HHHHHHhcccCCCcchhcccccccccc
Q 011003          469 KLCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       469 ~~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      .+|++||+++|+++++||++|.+|..+
T Consensus        84 ~~~~~al~~~p~~~~a~~~~g~~~~~~  110 (162)
T 3rkv_A           84 ETSSEVLKREETNEKALFRRAKARIAA  110 (162)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            999999999999999999999998765

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=99.50  E-value=3.6e-14  Score=116.55  Aligned_cols=84  Identities=21%  Similarity=0.412  Sum_probs=73.5

Q ss_pred             CCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEc-CCCccCCcccccc
Q 011003          284 ERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIA-PEYAFGSAESQQE  362 (496)
Q Consensus       284 ~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~-~~~~yg~~~~~~~  362 (496)
                      ..+..||.|+|+|.+++ ||++|+++    ...|+.|.+|.+++++||+++|.+|++||++.|.|+ |.. ||..+.   
T Consensus        28 ~~~~~gD~V~v~Y~g~~-dG~~fdss----~~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~-Yg~~~~---   98 (113)
T 1hxv_A           28 KKLANGDIAIIDFTGIV-DNKKLASA----SAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSD-YHVKEL---   98 (113)
T ss_dssp             -CCCSSEEEEEEEEEEE-TTEECSTT----CCSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTT-SSSSGG---
T ss_pred             CCCCCCCEEEEEEEEEE-CCEEcccC----CccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchh-hCcCCC---
Confidence            56889999999999999 99999876    368999999999999999999999999999999996 443 886542   


Q ss_pred             ccCCCCCCeEEEEEEEeee
Q 011003          363 LAVVPPNSTVHYEVELVSF  381 (496)
Q Consensus       363 ~~~ip~~~~l~f~v~l~~~  381 (496)
                           ++++++|+|+|+++
T Consensus        99 -----~g~~l~F~V~l~~V  112 (113)
T 1hxv_A           99 -----QSKPVTFEVVLKAI  112 (113)
T ss_dssp             -----GSCCCEEEEEECCB
T ss_pred             -----CCCEEEEEEEEEEE
Confidence                 56899999999876

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=99.48  E-value=1.9e-13  Score=118.37  Aligned_cols=73  Identities=26%  Similarity=0.327  Sum_probs=66.9

Q ss_pred             CCCCCCCeEEEEEEEEEc-CCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCCccCCccc
Q 011003          284 ERPNEGAVVKVKLIGKLQ-DGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAES  359 (496)
Q Consensus       284 ~~p~~~~~V~v~y~~~~~-~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~  359 (496)
                      ..+..|+.|++||.+++. +|++|++++.   ..|+.|.+|.+++++||+.+|.+|++||++.|.|||+.|||+.+.
T Consensus         5 ~~i~~gd~V~v~Y~g~~~~dG~~fdss~~---~~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~~   78 (151)
T 2kr7_A            5 DLESIKQAALIEYEVREQGSSIVLDSNIS---KEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYES   78 (151)
T ss_dssp             CCTTSCCEEEEEEEEEESSCSCEEEESTT---TCCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCS
T ss_pred             cCCCCCCEEEEEEEEEECCCCCEEEeCCC---CcCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCCCc
Confidence            456789999999999998 9999998843   589999999999999999999999999999999999999998753

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.47  E-value=7.4e-14  Score=121.30  Aligned_cols=103  Identities=15%  Similarity=0.105  Sum_probs=85.5

Q ss_pred             cChHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHH
Q 011003          390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK  469 (496)
Q Consensus       390 ~~~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~  469 (496)
                      |.+-.....+..++..||.+|+.|+|++|+.+|.+||++.+......   .....+....+|+|+|.|+.++++|.+|+.
T Consensus         2 ~~~~~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~---a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~   78 (159)
T 2hr2_A            2 MKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE---AFDHAGFDAFCHAGLAEALAGLRSFDEALH   78 (159)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS---CCCHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh---hhhhccchHHHHHHHHHHHHHCCCHHHHHH
Confidence            33434467899999999999999999999999999999976532211   111234456699999999999999999999


Q ss_pred             HHHHHhcc-------cCCCcchh----cccccccccc
Q 011003          470 LCTKKCES-------SVQKGSGI----HSDGRFRFGR  495 (496)
Q Consensus       470 ~~~~al~~-------dp~~~Ka~----~rrg~a~~~l  495 (496)
                      +|++||++       +|++.+||    ||||.||..|
T Consensus        79 ~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~l  115 (159)
T 2hr2_A           79 SADKALHYFNRRGELNQDEGKLWISAVYSRALALDGL  115 (159)
T ss_dssp             HHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHC
Confidence            99999999       99999999    9999999876

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=99.44  E-value=3e-13  Score=124.35  Aligned_cols=73  Identities=29%  Similarity=0.439  Sum_probs=65.0

Q ss_pred             CCCCCeEEEEEEEEEcCCcEEEEcCCC-----------CCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCCcc
Q 011003          286 PNEGAVVKVKLIGKLQDGTVFVKKGHS-----------EEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAF  354 (496)
Q Consensus       286 p~~~~~V~v~y~~~~~~g~~~~~~~~~-----------~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~~y  354 (496)
                      ...|+.|++||.+++ ||++||++...           ..+.|+.|.+|.+++++||+.+|.+|++||++.|.|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~AY   80 (231)
T 3prb_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (231)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHHhc
Confidence            467999999999999 99999988531           113799999999999999999999999999999999999999


Q ss_pred             CCccc
Q 011003          355 GSAES  359 (496)
Q Consensus       355 g~~~~  359 (496)
                      |+.+.
T Consensus        81 Ge~~~   85 (231)
T 3prb_A           81 GKRDP   85 (231)
T ss_dssp             CCCCG
T ss_pred             CCCCh
Confidence            99763

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=99.44  E-value=5.8e-13  Score=117.32  Aligned_cols=70  Identities=14%  Similarity=0.237  Sum_probs=64.9

Q ss_pred             CCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCCccCCcc
Q 011003          286 PNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE  358 (496)
Q Consensus       286 p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~  358 (496)
                      +..|+.|+++|.+++.+|++|++++.   ..|+.|.+|.+++++||+.+|.+|++||++.|.|||+.|||+.+
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~---~~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~   72 (171)
T 2k8i_A            3 VAKDLVVSLAYQVRTEDGVLVDESPV---SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD   72 (171)
T ss_dssp             CCTTEEEEEEEEEEETTSCEEEECCS---SSCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCC
T ss_pred             CCCCCEEEEEEEEEECCCCEEeeccC---CcCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCC
Confidence            56799999999999999999998743   48999999999999999999999999999999999999999874

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=99.43  E-value=9.4e-14  Score=120.30  Aligned_cols=74  Identities=32%  Similarity=0.534  Sum_probs=66.0

Q ss_pred             CCCCCeEEEEEEEEEcCCcEEEEcCC----------C-CCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCCcc
Q 011003          286 PNEGAVVKVKLIGKLQDGTVFVKKGH----------S-EEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAF  354 (496)
Q Consensus       286 p~~~~~V~v~y~~~~~~g~~~~~~~~----------~-~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~~y  354 (496)
                      +..|+.|++||.+++.+|++|++++.          . ....|+.|.+|.+++++||+.+|.+|++||++.|.|||+.||
T Consensus         2 i~~gd~V~v~Y~g~~~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~aY   81 (151)
T 1ix5_A            2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY   81 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHHHC
Confidence            56799999999999999999999842          0 124799999999999999999999999999999999999999


Q ss_pred             CCccc
Q 011003          355 GSAES  359 (496)
Q Consensus       355 g~~~~  359 (496)
                      |+.+.
T Consensus        82 G~~~~   86 (151)
T 1ix5_A           82 GNRNE   86 (151)
T ss_dssp             CSCCS
T ss_pred             CCCCc
Confidence            98764

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=99.43  E-value=4.5e-13  Score=120.38  Aligned_cols=70  Identities=14%  Similarity=0.237  Sum_probs=65.0

Q ss_pred             CCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCCccCCcc
Q 011003          286 PNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE  358 (496)
Q Consensus       286 p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~  358 (496)
                      +..++.|+|+|++++.+|++|++++.   ..|+.|.+|.+++++||+++|.+|++||+++|.|||+.|||+.+
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~---~~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~   72 (196)
T 2kfw_A            3 VAKDLVVSLAYQVRTEDGVLVDESPV---SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD   72 (196)
T ss_dssp             CCSSCEEEEEEEEEETTTEEEEECCT---TSCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCC
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecCC---CCCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCC
Confidence            56799999999999999999998843   48999999999999999999999999999999999999999865

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.41  E-value=1.1e-13  Score=116.63  Aligned_cols=84  Identities=27%  Similarity=0.339  Sum_probs=76.6

Q ss_pred             HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE  476 (496)
Q Consensus       397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  476 (496)
                      +.+..++++|+.+|++|+|.+|+..|++|+++-+               ....+|.|+|.||+++++|.+|+.+|++||+
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~   75 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP---------------ENAILYSNRAACLTKLMEFQRALDDCDTCIR   75 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHhhHHHhhccHHHHHHHHHHHHH
Confidence            4678899999999999999999999999999833               3478899999999999999999999999999


Q ss_pred             ccCCCcchhcccccccccc
Q 011003          477 SSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       477 ~dp~~~Ka~~rrg~a~~~l  495 (496)
                      ++|+++++|+++|.+|..+
T Consensus        76 ~~p~~~~a~~~lg~~~~~~   94 (126)
T 4gco_A           76 LDSKFIKGYIRKAACLVAM   94 (126)
T ss_dssp             HCTTCHHHHHHHHHHHHHT
T ss_pred             hhhhhhHHHHHHHHHHHHC
Confidence            9999999999999988765

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=99.34  E-value=3.2e-12  Score=111.16  Aligned_cols=66  Identities=18%  Similarity=0.335  Sum_probs=61.2

Q ss_pred             CCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCCccCCccc
Q 011003          286 PNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAES  359 (496)
Q Consensus       286 p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~  359 (496)
                      +..|+.|+++|.++ .+|++|++++       +.|.+|.+++++||+.+|.+|++||++.|.|||+.|||+.+.
T Consensus         3 i~~gd~V~v~Y~g~-~dG~~fdss~-------~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~   68 (158)
T 3cgm_A            3 VGQDKVVTIRYTLQ-VEGEVLDQGE-------LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHDP   68 (158)
T ss_dssp             CCTTEEEEEEEEEE-ETTEEEEEEE-------EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTCCCCG
T ss_pred             CCCCCEEEEEEEEE-ECCEEEEeeE-------EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcCCCCc
Confidence            46789999999999 8999999872       899999999999999999999999999999999999998753

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.33  E-value=4e-12  Score=115.47  Aligned_cols=123  Identities=25%  Similarity=0.326  Sum_probs=98.9

Q ss_pred             EEEEEEeeeeccccccccChHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChH-HHHHHHHHHHHhh
Q 011003          373 HYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDE-EKKQAKALKVACN  451 (496)
Q Consensus       373 ~f~v~l~~~~~~~~~~~~~~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~-~~~~~~~~~~~~~  451 (496)
                      .....+..+++.++.|+++.+++...+..++..|+.+++.|+|.+|+..|.+|+++.+........ .......+...++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (198)
T 2fbn_A           12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN   91 (198)
T ss_dssp             ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence            334556678889999999999999999999999999999999999999999999987655433222 2333355567899


Q ss_pred             hHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003          452 LNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       452 ~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      .|+|.||+++++|.+|+.+|+++|+++|++.++|+++|.+|..+
T Consensus        92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  135 (198)
T 2fbn_A           92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYF  135 (198)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999988654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.27  E-value=1.4e-12  Score=109.92  Aligned_cols=84  Identities=21%  Similarity=0.334  Sum_probs=72.8

Q ss_pred             HHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHH
Q 011003          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKK  474 (496)
Q Consensus       395 ~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  474 (496)
                      ..+.+..+++.||.+|++|+|.+|+..|++|+++-+               ....+|+|+|.||+++++|.+|+.+|++|
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p---------------~~~~~~~nlg~~~~~~~~~~~A~~~~~~a   68 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP---------------SNITFYNNKAAVYFEEKKFAECVQFCEKA   68 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence            456788899999999999999999999999999833               33788999999999999999999999999


Q ss_pred             hcccCCCcc-------hhcccccccc
Q 011003          475 CESSVQKGS-------GIHSDGRFRF  493 (496)
Q Consensus       475 l~~dp~~~K-------a~~rrg~a~~  493 (496)
                      |+++|++..       +|+++|.++.
T Consensus        69 l~~~~~~~~~~~~~a~~~~~lg~~~~   94 (127)
T 4gcn_A           69 VEVGRETRADYKLIAKAMSRAGNAFQ   94 (127)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHhCcccchhhHHHHHHHHHHHHHHH
Confidence            999998865       5566665554

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=99.22  E-value=9e-12  Score=126.71  Aligned_cols=99  Identities=25%  Similarity=0.441  Sum_probs=86.8

Q ss_pred             CCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCcccCCCCCCCCCCC
Q 011003           51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP  130 (496)
Q Consensus        51 ~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~  130 (496)
                      ..++.||.|.+||+++. ||+.|+++.  +.|+.|.+|.++++|||+++|.||++|+++.|.+|+..+||..+.     +
T Consensus       156 ~~~~~gD~V~i~y~g~~-dG~~fd~~~--~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~l-----a  227 (432)
T 1w26_A          156 GAVEAEDRVTIDFTGSV-DGEEFEGGK--ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL-----K  227 (432)
T ss_dssp             SCCCTTCEEEECEEEES-SSCBCSSCC--CSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTTT-----S
T ss_pred             CCCCCCCEEEEEEEEee-CCeEccCCC--ccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCCC-----C
Confidence            56899999999999995 999999987  489999999999999999999999999999999999999998764     5


Q ss_pred             CCceEEEEEEEEEeecceeccCcccee
Q 011003          131 NATLQFDVELLSWTSVKDICKDGGIIK  157 (496)
Q Consensus       131 ~~~l~~~v~l~~~~~~~~~~~d~~~~k  157 (496)
                      |.+++|.|+|.++........|..+.+
T Consensus       228 g~~~~F~V~v~~v~~~~lpeldDEfak  254 (432)
T 1w26_A          228 GKAAKFAINLKKVEERELPELTAEFIK  254 (432)
T ss_dssp             SCEEEEEEECCEECCEECCCCSHHHHT
T ss_pred             CceEEEEEEEEEEeccCCCCcchHHHH
Confidence            689999999999986555555555554

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.17  E-value=3e-11  Score=121.28  Aligned_cols=105  Identities=25%  Similarity=0.425  Sum_probs=90.9

Q ss_pred             ChHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCC-CCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHH
Q 011003          391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK  469 (496)
Q Consensus       391 ~~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~  469 (496)
                      +.++.++.+..++..|+.+++.|+|.+|+..|++|+++++... ....++.....+....+|+|+|.||+++++|.+|+.
T Consensus       215 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~  294 (370)
T 1ihg_A          215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD  294 (370)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence            5778899999999999999999999999999999999764421 112233334678889999999999999999999999


Q ss_pred             HHHHHhcccCCCcchhcccccccccc
Q 011003          470 LCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       470 ~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      +|++||+++|++.++||++|.+|..+
T Consensus       295 ~~~~al~~~p~~~~a~~~lg~~~~~~  320 (370)
T 1ihg_A          295 SCLEALEIDPSNTKALYRRAQGWQGL  320 (370)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHHc
Confidence            99999999999999999999998765

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.13  E-value=3.4e-11  Score=100.56  Aligned_cols=83  Identities=19%  Similarity=0.207  Sum_probs=76.1

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      .+..+...|+.+++.|+|.+|+..|++++++.+.               ...++.|+|.||+++++|.+|+.+++++|++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   67 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE---------------DARGYSNRAAALAKLMSFPEAIADCNKAIEK   67 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---------------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            4678899999999999999999999999998433               3688999999999999999999999999999


Q ss_pred             cCCCcchhcccccccccc
Q 011003          478 SVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       478 dp~~~Ka~~rrg~a~~~l  495 (496)
                      +|++.++|+++|.++..+
T Consensus        68 ~p~~~~~~~~lg~~~~~~   85 (126)
T 3upv_A           68 DPNFVRAYIRKATAQIAV   85 (126)
T ss_dssp             CTTCHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHHH
Confidence            999999999999988754

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=99.11  E-value=2.8e-11  Score=121.45  Aligned_cols=100  Identities=20%  Similarity=0.429  Sum_probs=86.5

Q ss_pred             CCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCcccCCCCCCCCCCC
Q 011003           51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP  130 (496)
Q Consensus        51 ~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~  130 (496)
                      ..++.||.|.+||+++ .||+.|+++.  +.|+.|.+|.++++|||+++|.||++|+++.|.|++...||..+.     +
T Consensus       159 ~~~~~gD~V~i~y~g~-~dG~~fd~~~--~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~l-----a  230 (392)
T 1t11_A          159 EAAENGKRVSIDFVGS-IDGVEFEGGK--AENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENL-----K  230 (392)
T ss_dssp             CCCCTTCEEEEEEEEE-SSSSCCTTCE--EEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTT-----S
T ss_pred             CCCCCCCEEEEEEEEE-ECCEEccCCC--ccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccCCC-----C
Confidence            4689999999999999 4999999885  479999999999999999999999999999999987778987653     6


Q ss_pred             CCceEEEEEEEEEeecceeccCccceeE
Q 011003          131 NATLQFDVELLSWTSVKDICKDGGIIKK  158 (496)
Q Consensus       131 ~~~l~~~v~l~~~~~~~~~~~d~~~~k~  158 (496)
                      |.++.|+|+|.++........|..+.+.
T Consensus       231 Gk~~~F~V~v~~i~~~~lpeldDEfak~  258 (392)
T 1t11_A          231 GKAAKFAIKVNKVEARELPELNDEFVAR  258 (392)
T ss_dssp             SCEEEECCCEEEEEEEECCCCSTGGGGG
T ss_pred             CCeEEEEEEEEEEEcCCCCCcCHHHHHH
Confidence            7999999999999876666666666653

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.02  E-value=2e-10  Score=99.91  Aligned_cols=84  Identities=12%  Similarity=0.124  Sum_probs=76.5

Q ss_pred             HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE  476 (496)
Q Consensus       397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  476 (496)
                      ..+..+...|..+++.|+|.+|+..|++++++               ++....+|.|+|.||.++++|.+|+.++++|++
T Consensus        34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---------------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~   98 (151)
T 3gyz_A           34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---------------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA   98 (151)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence            34567788999999999999999999999998               344488999999999999999999999999999


Q ss_pred             ccCCCcchhcccccccccc
Q 011003          477 SSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       477 ~dp~~~Ka~~rrg~a~~~l  495 (496)
                      ++|+++.+||++|.+|..+
T Consensus        99 l~P~~~~~~~~lg~~~~~l  117 (151)
T 3gyz_A           99 LGKNDYTPVFHTGQCQLRL  117 (151)
T ss_dssp             HSSSCCHHHHHHHHHHHHT
T ss_pred             hCCCCcHHHHHHHHHHHHc
Confidence            9999999999999998765

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.00  E-value=2.4e-10  Score=92.52  Aligned_cols=82  Identities=26%  Similarity=0.283  Sum_probs=73.5

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      .+..+...|+.+++.|+|.+|+..|.+|++..+.               ...++.|+|.|++++++|.+|+.+|+++|++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ---------------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            3566788999999999999999999999998433               2678999999999999999999999999999


Q ss_pred             cCCC------cchhccccccccc
Q 011003          478 SVQK------GSGIHSDGRFRFG  494 (496)
Q Consensus       478 dp~~------~Ka~~rrg~a~~~  494 (496)
                      +|++      .++++++|.++..
T Consensus        68 ~p~~~~~~~~~~~~~~~~~~~~~   90 (111)
T 2l6j_A           68 TSTAEHVAIRSKLQYRLELAQGA   90 (111)
T ss_dssp             CSSTTSHHHHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHHHHHHHH
Confidence            9999      9999999988754

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=98.97  E-value=6e-10  Score=113.26  Aligned_cols=87  Identities=14%  Similarity=0.245  Sum_probs=78.0

Q ss_pred             CCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCCccCCccccccc
Q 011003          284 ERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQEL  363 (496)
Q Consensus       284 ~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~  363 (496)
                      ..+..||.|++||.++ .||+.|+++    ...|+.|.+|.|.+++||+.+|.+|++||++.|.+|+..+||..+.    
T Consensus       156 ~~~~~gD~V~i~y~g~-~dG~~fd~~----~~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~l----  226 (432)
T 1w26_A          156 GAVEAEDRVTIDFTGS-VDGEEFEGG----KASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL----  226 (432)
T ss_dssp             SCCCTTCEEEECEEEE-SSSCBCSSC----CCSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTTT----
T ss_pred             CCCCCCCEEEEEEEEe-eCCeEccCC----CccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCCC----
Confidence            4578999999999999 499999765    3689999999999999999999999999999999999999996542    


Q ss_pred             cCCCCCCeEEEEEEEeeeec
Q 011003          364 AVVPPNSTVHYEVELVSFEK  383 (496)
Q Consensus       364 ~~ip~~~~l~f~v~l~~~~~  383 (496)
                          +|.+++|+|+|+++..
T Consensus       227 ----ag~~~~F~V~v~~v~~  242 (432)
T 1w26_A          227 ----KGKAAKFAINLKKVEE  242 (432)
T ss_dssp             ----SSCEEEEEEECCEECC
T ss_pred             ----CCceEEEEEEEEEEec
Confidence                5789999999999985

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.96  E-value=4.6e-10  Score=98.36  Aligned_cols=85  Identities=18%  Similarity=0.125  Sum_probs=73.8

Q ss_pred             HHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHh
Q 011003          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKC  475 (496)
Q Consensus       396 ~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  475 (496)
                      ...+..+...|+.+++.|+|.+|+..|.+++++.+.               ...++.|+|.||+++++|.+|+.+++++|
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al   72 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA---------------NPIYLSNRAAAYSASGQHEKAAEDAELAT   72 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---------------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            345778899999999999999999999999998433               36788899999999999999999999999


Q ss_pred             cccCCCcchhcccccccccc
Q 011003          476 ESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       476 ~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      +++|++..+|+++|.+|+.+
T Consensus        73 ~~~p~~~~~~~~lg~~~~~~   92 (164)
T 3sz7_A           73 VVDPKYSKAWSRLGLARFDM   92 (164)
T ss_dssp             HHCTTCHHHHHHHHHHHHHT
T ss_pred             HhCCCCHHHHHHHHHHHHHc
Confidence            99999999999998887654

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=98.83  E-value=1.5e-09  Score=108.89  Aligned_cols=130  Identities=12%  Similarity=0.206  Sum_probs=92.2

Q ss_pred             CCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCCccCCccccccc
Q 011003          284 ERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQEL  363 (496)
Q Consensus       284 ~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~  363 (496)
                      ..+..||.|++||.++ .||+.|+++    ...++.|.+|.|.+++||+.+|.+|++||++.|.++....||..+     
T Consensus       159 ~~~~~gD~V~i~y~g~-~dG~~fd~~----~~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~-----  228 (392)
T 1t11_A          159 EAAENGKRVSIDFVGS-IDGVEFEGG----KAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAEN-----  228 (392)
T ss_dssp             CCCCTTCEEEEEEEEE-SSSSCCTTC----EEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTT-----
T ss_pred             CCCCCCCEEEEEEEEE-ECCEEccCC----CccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccCC-----
Confidence            4578999999999999 589998764    468999999999999999999999999999999998656777532     


Q ss_pred             cCCCCCCeEEEEEEEeeeeccc--c---ccccChHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHh
Q 011003          364 AVVPPNSTVHYEVELVSFEKEK--E---SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAV  426 (496)
Q Consensus       364 ~~ip~~~~l~f~v~l~~~~~~~--~---~~~~~~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al  426 (496)
                         .+|.+++|+|+|+++....  +   .|.............+|+.-.....+..-..+......++
T Consensus       229 ---laGk~~~F~V~v~~i~~~~lpeldDEfak~~~~~~~tleelk~~ir~~l~~~~~~~~~~~~~~~v  293 (392)
T 1t11_A          229 ---LKGKAAKFAIKVNKVEARELPELNDEFVARFGVAEGGVDALKAEVRKNMERELKQAIKARIKEQA  293 (392)
T ss_dssp             ---TSSCEEEECCCEEEEEEEECCCCSTGGGGGGSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ---CCCCeEEEEEEEEEEEcCCCCCcCHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               2678999999999998521  1   1111111113445555555555554444444444444433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.82  E-value=3e-09  Score=91.87  Aligned_cols=83  Identities=10%  Similarity=0.077  Sum_probs=74.0

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      .+..+...|..+++.|+|.+|+..|.+++..-+               ....++.|+|.|+.++++|.+|+..+++++++
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l   84 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH---------------YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM   84 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc---------------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            455677889999999999999999999999833               33778899999999999999999999999999


Q ss_pred             cCCCcchhcccccccccc
Q 011003          478 SVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       478 dp~~~Ka~~rrg~a~~~l  495 (496)
                      +|+++.+||.+|.+|..+
T Consensus        85 ~p~~~~~~~~lg~~~~~~  102 (148)
T 2vgx_A           85 DIXEPRFPFHAAECLLQX  102 (148)
T ss_dssp             STTCTHHHHHHHHHHHHT
T ss_pred             CCCCchHHHHHHHHHHHc
Confidence            999999999999988754

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.79  E-value=4.3e-09  Score=88.26  Aligned_cols=80  Identities=11%  Similarity=0.158  Sum_probs=71.0

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+...|..+++.|+|.+|+..|++|+++               ++....+|.|+|.||.++++|.+|+.+++++|+++
T Consensus        47 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---------------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~  111 (126)
T 4gco_A           47 AILYSNRAACLTKLMEFQRALDDCDTCIRL---------------DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVD  111 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhHHHhhccHHHHHHHHHHHHHh---------------hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            344567899999999999999999999998               33347789999999999999999999999999999


Q ss_pred             CCCcchhcccccccc
Q 011003          479 VQKGSGIHSDGRFRF  493 (496)
Q Consensus       479 p~~~Ka~~rrg~a~~  493 (496)
                      |+|..|+...+.+++
T Consensus       112 P~~~~a~~~l~~~lr  126 (126)
T 4gco_A          112 PSNEEAREGVRNCLR  126 (126)
T ss_dssp             TTCHHHHHHHHHHCC
T ss_pred             cCCHHHHHHHHHhcC
Confidence            999999988887763

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.78  E-value=8.3e-09  Score=86.75  Aligned_cols=82  Identities=29%  Similarity=0.328  Sum_probs=74.3

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+...|..+++.|+|.+|+..|.++++..+.               ...++.|+|.|++++++|.+|+..++++++++
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~   73 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---------------VAVYYTNRALCYLKMQQPEQALADCRRALELD   73 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC---------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            566788999999999999999999999998433               26789999999999999999999999999999


Q ss_pred             CCCcchhcccccccccc
Q 011003          479 VQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       479 p~~~Ka~~rrg~a~~~l  495 (496)
                      |++..+|+++|.++..+
T Consensus        74 p~~~~~~~~l~~~~~~~   90 (137)
T 3q49_B           74 GQSVKAHFFLGQCQLEM   90 (137)
T ss_dssp             TTCHHHHHHHHHHHHHT
T ss_pred             chhHHHHHHHHHHHHHH
Confidence            99999999999888654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.77  E-value=5.4e-09  Score=89.27  Aligned_cols=83  Identities=16%  Similarity=0.141  Sum_probs=73.5

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      ....+...|..+++.|+|.+|+..|.++++.-+               ....++.++|.||.++++|.+|+..+++++++
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   81 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH---------------YDARYFLGLGACRQSLGLYEQALQSYSYGALM   81 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC---------------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            345667889999999999999999999999833               33778999999999999999999999999999


Q ss_pred             cCCCcchhcccccccccc
Q 011003          478 SVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       478 dp~~~Ka~~rrg~a~~~l  495 (496)
                      +|+++.+++.+|.+|..+
T Consensus        82 ~p~~~~~~~~lg~~~~~~   99 (142)
T 2xcb_A           82 DINEPRFPFHAAECHLQL   99 (142)
T ss_dssp             CTTCTHHHHHHHHHHHHT
T ss_pred             CCCCcHHHHHHHHHHHHc
Confidence            999999999999888754

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.77  E-value=4.1e-09  Score=91.19  Aligned_cols=82  Identities=9%  Similarity=-0.081  Sum_probs=70.8

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      ........|+.+++.|+|++|+..|++|+++-               +....+|.|+|.||.++++|.+|+.++.++|++
T Consensus        30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~---------------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~   94 (150)
T 4ga2_A           30 KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ---------------ERDPKAHRFLGLLYELEENTDKAVECYRRSVEL   94 (150)
T ss_dssp             HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence            34445567999999999999999999999983               334788999999999999999999999999999


Q ss_pred             cCCCcchhccccccccc
Q 011003          478 SVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       478 dp~~~Ka~~rrg~a~~~  494 (496)
                      +|+++.+|+++|.+|..
T Consensus        95 ~p~~~~~~~~la~~~~~  111 (150)
T 4ga2_A           95 NPTQKDLVLKIAELLCK  111 (150)
T ss_dssp             CTTCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999887754

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.75  E-value=9.8e-09  Score=98.68  Aligned_cols=82  Identities=29%  Similarity=0.328  Sum_probs=75.0

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..++..|+.+++.|+|.+|+..|++|++..+.               ...++.|+|.||+++++|.+|+.++++|++++
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~   68 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---------------VAVYYTNRALCYLKMQQPEQALADCRRALELD   68 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            457889999999999999999999999998443               37889999999999999999999999999999


Q ss_pred             CCCcchhcccccccccc
Q 011003          479 VQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       479 p~~~Ka~~rrg~a~~~l  495 (496)
                      |++.++|+++|.+|..+
T Consensus        69 p~~~~~~~~lg~~~~~~   85 (281)
T 2c2l_A           69 GQSVKAHFFLGQCQLEM   85 (281)
T ss_dssp             TTCHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHc
Confidence            99999999999988754

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.70  E-value=2.6e-08  Score=77.11  Aligned_cols=82  Identities=22%  Similarity=0.249  Sum_probs=72.4

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+...|..++..++|.+|+..|.++++..+..               ..++.|+|.|+.++++|.+|+..++++++++
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~   73 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD   73 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            4556778999999999999999999999974322               5678999999999999999999999999999


Q ss_pred             CCCcchhcccccccccc
Q 011003          479 VQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       479 p~~~Ka~~rrg~a~~~l  495 (496)
                      |++..+++.+|.++..+
T Consensus        74 p~~~~~~~~l~~~~~~~   90 (91)
T 1na3_A           74 PNNAEAKQNLGNAKQKQ   90 (91)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhc
Confidence            99999999999887653

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.69  E-value=9.2e-09  Score=85.49  Aligned_cols=79  Identities=9%  Similarity=-0.075  Sum_probs=71.4

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .+...|..+++.|+|.+|+..|.++++.-+               ....++.++|.|+.+++++.+|+..+++|++++|+
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P---------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~   83 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEP---------------EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK   83 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHST---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            456788999999999999999999999843               34788999999999999999999999999999999


Q ss_pred             Ccchhccccccccc
Q 011003          481 KGSGIHSDGRFRFG  494 (496)
Q Consensus       481 ~~Ka~~rrg~a~~~  494 (496)
                      +..+++.+|.+|..
T Consensus        84 ~~~~~~~la~~~~~   97 (121)
T 1hxi_A           84 DIAVHAALAVSHTN   97 (121)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999988764

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.67  E-value=3.1e-08  Score=83.95  Aligned_cols=84  Identities=27%  Similarity=0.355  Sum_probs=73.6

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+...|..++..|+|.+|+..|+++++..+.            ......++.|+|.||+++++|.+|+..|+++++++
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~   95 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDAT------------PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD   95 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc------------chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence            566788999999999999999999999987432            23457889999999999999999999999999999


Q ss_pred             CCCcchhccccccccc
Q 011003          479 VQKGSGIHSDGRFRFG  494 (496)
Q Consensus       479 p~~~Ka~~rrg~a~~~  494 (496)
                      |++..+|+++|.++..
T Consensus        96 ~~~~~~~~~~a~~~~~  111 (148)
T 2dba_A           96 GGDVKALYRRSQALEK  111 (148)
T ss_dssp             SCCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHH
Confidence            9999999999988764

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.66  E-value=4.5e-08  Score=84.69  Aligned_cols=89  Identities=21%  Similarity=0.184  Sum_probs=73.5

Q ss_pred             hHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHH
Q 011003          392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC  471 (496)
Q Consensus       392 ~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~  471 (496)
                      .....+.+..+...|+.++..|+|.+|+..|.++++..+..               ..++.|+|.|++++++|.+|+..+
T Consensus         6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~   70 (166)
T 1a17_A            6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---------------AIYYGNRSLAYLRTECYGYALGDA   70 (166)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHcCCHHHHHHHH
Confidence            45678889999999999999999999999999999974332               567778888888888888888888


Q ss_pred             HHHhcccCCCcchhcccccccccc
Q 011003          472 TKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       472 ~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      +++++++|++..+|+++|.++..+
T Consensus        71 ~~a~~~~~~~~~~~~~~a~~~~~~   94 (166)
T 1a17_A           71 TRAIELDKKYIKGYYRRAASNMAL   94 (166)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHh
Confidence            888888888888888888776543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.61  E-value=4.9e-08  Score=78.88  Aligned_cols=81  Identities=22%  Similarity=0.208  Sum_probs=56.8

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      .+..+...|..++..|+|.+|+..|.++++..+..               ..++.++|.|++++++|.+|+..+++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   67 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN---------------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   67 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---------------HHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            35566778888888888888888888888764322               455666666666667777777777777666


Q ss_pred             cCCCcchhcccccccc
Q 011003          478 SVQKGSGIHSDGRFRF  493 (496)
Q Consensus       478 dp~~~Ka~~rrg~a~~  493 (496)
                      +|++..+++.+|.++.
T Consensus        68 ~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A           68 KPDWGKGYSRKAAALE   83 (118)
T ss_dssp             CTTCHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHH
Confidence            6666666666666554

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.59  E-value=5e-08  Score=89.06  Aligned_cols=95  Identities=8%  Similarity=0.057  Sum_probs=52.9

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChH-HHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDE-EKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~-~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      +..+..+|..++..|+|.+|+..|+++++.-+......-. ...........++.|+|.||.++++|.+|+..++++|++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            4567789999999999999999999999873221000000 000000001111222555555555555555555555555


Q ss_pred             cCCCcchhcccccccc
Q 011003          478 SVQKGSGIHSDGRFRF  493 (496)
Q Consensus       478 dp~~~Ka~~rrg~a~~  493 (496)
                      +|+++.+|+.+|.+++
T Consensus        84 ~p~~~~~~~~lg~~~~   99 (208)
T 3urz_A           84 APNNVDCLEACAEMQV   99 (208)
T ss_dssp             CTTCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            5555555555555443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.58  E-value=2.4e-08  Score=86.21  Aligned_cols=75  Identities=12%  Similarity=-0.026  Sum_probs=67.1

Q ss_pred             hhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchh
Q 011003          406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGI  485 (496)
Q Consensus       406 Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~  485 (496)
                      |+.+..+|++++|+..|++++..               .+.....+.++|.+|+++++|.+|+..++++|+++|+++.+|
T Consensus         4 G~~~~~~~~~e~ai~~~~~a~~~---------------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~   68 (150)
T 4ga2_A            4 GSMRRSKADVERYIASVQGSTPS---------------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAH   68 (150)
T ss_dssp             ---CCCHHHHHHHHHHHHHHSCS---------------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHcChHHHHHHHHHHhccc---------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            66777899999999999999997               677788899999999999999999999999999999999999


Q ss_pred             cccccccccc
Q 011003          486 HSDGRFRFGR  495 (496)
Q Consensus       486 ~rrg~a~~~l  495 (496)
                      +.+|.+|..+
T Consensus        69 ~~lg~~~~~~   78 (150)
T 4ga2_A           69 RFLGLLYELE   78 (150)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            9999988654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.57  E-value=9.9e-08  Score=76.35  Aligned_cols=81  Identities=14%  Similarity=0.079  Sum_probs=71.5

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp  479 (496)
                      ..+...|..++..|+|.+|+..|.++++..+..               ..++.|+|.+++++++|.+|+..++++++++|
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~   71 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE---------------SKYWLMKGKALYNLERYEEAVDCYNYVINVIE   71 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence            345678889999999999999999999984432               56789999999999999999999999999999


Q ss_pred             C--Ccchhcccccccccc
Q 011003          480 Q--KGSGIHSDGRFRFGR  495 (496)
Q Consensus       480 ~--~~Ka~~rrg~a~~~l  495 (496)
                      +  +..+++.+|.++..+
T Consensus        72 ~~~~~~~~~~l~~~~~~~   89 (112)
T 2kck_A           72 DEYNKDVWAAKADALRYI   89 (112)
T ss_dssp             CTTCHHHHHHHHHHHTTC
T ss_pred             ccchHHHHHHHHHHHHHH
Confidence            9  999999999888764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.56  E-value=7.1e-08  Score=79.95  Aligned_cols=78  Identities=29%  Similarity=0.342  Sum_probs=43.9

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      ...+...|+.++..|+|.+|+..|.++++..+..               ..++.++|.|++++++|.+|+..++++++++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~   80 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD---------------AKLYSNRAACYTKLLEFQLALKDCEECIQLE   80 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC---------------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            4566777888888888888888888888763321               2334444444444444444444444444444


Q ss_pred             CCCcchhcccccc
Q 011003          479 VQKGSGIHSDGRF  491 (496)
Q Consensus       479 p~~~Ka~~rrg~a  491 (496)
                      |++..+++.+|.+
T Consensus        81 ~~~~~~~~~la~~   93 (133)
T 2lni_A           81 PTFIKGYTRKAAA   93 (133)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             CCchHHHHHHHHH
Confidence            4444444444433

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.54  E-value=1.2e-07  Score=74.93  Aligned_cols=70  Identities=13%  Similarity=0.030  Sum_probs=62.6

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHH-hhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVA-CNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      ...+|..+++.|+|.+|+..|+++++..+.+               .. ++.|+|.||+++++|.+|+..++++++++|+
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~   67 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVG---------------KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD   67 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSST---------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            3467899999999999999999999984332               55 8999999999999999999999999999999


Q ss_pred             Ccchhc
Q 011003          481 KGSGIH  486 (496)
Q Consensus       481 ~~Ka~~  486 (496)
                      +..+++
T Consensus        68 ~~~~~~   73 (99)
T 2kc7_A           68 SPALQA   73 (99)
T ss_dssp             STHHHH
T ss_pred             cHHHHH
Confidence            999884

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.52  E-value=1.6e-07  Score=77.19  Aligned_cols=84  Identities=23%  Similarity=0.211  Sum_probs=50.5

Q ss_pred             HHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHH
Q 011003          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (496)
Q Consensus       394 e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~  473 (496)
                      .....+..+...|..++..++|..|+..|.++++..+..               ..++.++|.|+.++++|.+|+..+++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~   71 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN---------------AVYFCNRAAAYSKLGNYAGAVQDCER   71 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHhhchHHHHHHHHH
Confidence            344566777888888888888888888888888763321               33444444444445555555555555


Q ss_pred             HhcccCCCcchhccccccc
Q 011003          474 KCESSVQKGSGIHSDGRFR  492 (496)
Q Consensus       474 al~~dp~~~Ka~~rrg~a~  492 (496)
                      +++++|++..+++.+|.++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           72 AICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHCTTCHHHHHHHHHHH
T ss_pred             HHhcCccCHHHHHHHHHHH
Confidence            5444444444444444443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.50  E-value=7.6e-08  Score=87.85  Aligned_cols=74  Identities=15%  Similarity=0.109  Sum_probs=68.7

Q ss_pred             hhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcch
Q 011003          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSG  484 (496)
Q Consensus       405 ~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka  484 (496)
                      .|..+++.|+|.+|+..|++++++-+.               ...++.|+|.+++++|+|.+|+..++++|+++|++..+
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a  124 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPN---------------NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA  124 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence            899999999999999999999998443               37889999999999999999999999999999999999


Q ss_pred             hcccccccc
Q 011003          485 IHSDGRFRF  493 (496)
Q Consensus       485 ~~rrg~a~~  493 (496)
                      |+.+|.+|+
T Consensus       125 ~~~lg~~~~  133 (208)
T 3urz_A          125 NIFLGNYYY  133 (208)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998764

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.48  E-value=4.2e-08  Score=101.69  Aligned_cols=85  Identities=22%  Similarity=0.178  Sum_probs=70.1

Q ss_pred             HHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHh
Q 011003          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKC  475 (496)
Q Consensus       396 ~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  475 (496)
                      .+.+..+...|+.+++.|+|++|+..|++|+++.+.               ...++.|+|.||+++++|.+|+.++++|+
T Consensus         3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al   67 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS---------------NAIYYGNRSLAYLRTECYGYALGDATRAI   67 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc---------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            356777888999999999999999999999987332               26778888888888888888888888888


Q ss_pred             cccCCCcchhcccccccccc
Q 011003          476 ESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       476 ~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      +++|++.++|+++|.+|..+
T Consensus        68 ~l~p~~~~~~~~lg~~~~~~   87 (477)
T 1wao_1           68 ELDKKYIKGYYRRAASNMAL   87 (477)
T ss_dssp             HSCTTCHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHc
Confidence            88888888888888877643

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.47  E-value=1.2e-07  Score=78.58  Aligned_cols=83  Identities=13%  Similarity=0.136  Sum_probs=65.3

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .+...|..+++.|+|.+|+..|.++++..+..            .....++.++|.|++++++|.+|+..++++++.+|+
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~   71 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNG------------VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT   71 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence            45567888889999999999999988874432            122367788888888888888888888888888888


Q ss_pred             C---cchhcccccccccc
Q 011003          481 K---GSGIHSDGRFRFGR  495 (496)
Q Consensus       481 ~---~Ka~~rrg~a~~~l  495 (496)
                      +   ..+++++|.++..+
T Consensus        72 ~~~~~~~~~~la~~~~~~   89 (129)
T 2xev_A           72 HDKAAGGLLKLGLSQYGE   89 (129)
T ss_dssp             STTHHHHHHHHHHHHHHT
T ss_pred             CcccHHHHHHHHHHHHHc
Confidence            8   77788888877643

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.47  E-value=5e-08  Score=101.57  Aligned_cols=94  Identities=18%  Similarity=0.202  Sum_probs=84.6

Q ss_pred             ccccChHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHH
Q 011003          387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ  466 (496)
Q Consensus       387 ~~~~~~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~  466 (496)
                      ...++.+++.+.+..+...|+.+++.|+|.+|+..|+++++..+.               ...++.|+|.||+++++|.+
T Consensus        13 ~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~   77 (537)
T 3fp2_A           13 LKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN---------------EPVFYSNISACYISTGDLEK   77 (537)
T ss_dssp             HTTSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHTCHHH
T ss_pred             hcCCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC---------------CcHHHHHHHHHHHHcCCHHH
Confidence            446788888999999999999999999999999999999998433               37889999999999999999


Q ss_pred             HHHHHHHHhcccCCCcchhcccccccccc
Q 011003          467 AEKLCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       467 Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      |+..|+++++++|++..+++++|.++..+
T Consensus        78 A~~~~~~al~~~p~~~~~~~~la~~~~~~  106 (537)
T 3fp2_A           78 VIEFTTKALEIKPDHSKALLRRASANESL  106 (537)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHc
Confidence            99999999999999999999999887653

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.46  E-value=1.7e-07  Score=86.20  Aligned_cols=81  Identities=20%  Similarity=0.264  Sum_probs=69.5

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhc-cCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIE-YDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      ..+...|..+++.|+|.+|+..|+++++..+ .+               ..++.|+|.|+.++++|.+|+..++++++++
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~   72 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD---------------SVTAYNCGVCADNIKKYKEAADYFDIAIKKN   72 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC---------------cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Confidence            4677899999999999999999999999843 22               4677889999999999999999999999999


Q ss_pred             CCCcchhcccccccccc
Q 011003          479 VQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       479 p~~~Ka~~rrg~a~~~l  495 (496)
                      |++..+|+.+|.+|..+
T Consensus        73 p~~~~~~~~l~~~~~~~   89 (228)
T 4i17_A           73 YNLANAYIGKSAAYRDM   89 (228)
T ss_dssp             CSHHHHHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHHHHc
Confidence            99999999998887654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.46  E-value=1.1e-07  Score=82.89  Aligned_cols=78  Identities=17%  Similarity=0.091  Sum_probs=69.4

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp  479 (496)
                      ..+...|..+++.|+|.+|+..|.+++++-+               ....+|.|+|.||+++++|.+|+.++.++|+++|
T Consensus        46 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  110 (164)
T 3sz7_A           46 IYLSNRAAAYSASGQHEKAAEDAELATVVDP---------------KYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEG  110 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            3456788999999999999999999999843               3378899999999999999999999999999999


Q ss_pred             CCcchhccccccc
Q 011003          480 QKGSGIHSDGRFR  492 (496)
Q Consensus       480 ~~~Ka~~rrg~a~  492 (496)
                      ++..+|++++.+.
T Consensus       111 ~~~~~~~~~~l~~  123 (164)
T 3sz7_A          111 NGGSDAMKRGLET  123 (164)
T ss_dssp             SSCCHHHHHHHHH
T ss_pred             CchHHHHHHHHHH
Confidence            9999999887653

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.45  E-value=1.6e-07  Score=77.26  Aligned_cols=83  Identities=28%  Similarity=0.366  Sum_probs=73.1

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      .+..+...|..++..|+|.+|+..|.++++..+..               ..++.|+|.|++++++|.+|+..+++++++
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   67 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN---------------MTYITNQAAVYFEKGDYNKCRELCEKAIEV   67 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            45677889999999999999999999999984332               678899999999999999999999999999


Q ss_pred             cCCC-------cchhcccccccccc
Q 011003          478 SVQK-------GSGIHSDGRFRFGR  495 (496)
Q Consensus       478 dp~~-------~Ka~~rrg~a~~~l  495 (496)
                      +|++       ..+++++|.++..+
T Consensus        68 ~~~~~~~~~~~~~~~~~la~~~~~~   92 (131)
T 1elr_A           68 GRENREDYRQIAKAYARIGNSYFKE   92 (131)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHh
Confidence            9987       88999999887653

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.45  E-value=1.1e-07  Score=84.29  Aligned_cols=75  Identities=15%  Similarity=-0.015  Sum_probs=61.5

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .+...|..+++.|+|++|+..|+++++.-+               ....++.|+|.||.++|++.+|+.++++||+++|+
T Consensus       109 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p---------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  173 (184)
T 3vtx_A          109 AYYKLGLVYDSMGEHDKAIEAYEKTISIKP---------------GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK  173 (184)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHhCCchhHHHHHHHHHHhcc---------------hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence            345678888899999999999999998733               33778999999999999999999999999999998


Q ss_pred             Ccchhccccccc
Q 011003          481 KGSGIHSDGRFR  492 (496)
Q Consensus       481 ~~Ka~~rrg~a~  492 (496)
                      +  +.|++|..+
T Consensus       174 ~--a~~~lali~  183 (184)
T 3vtx_A          174 K--AKYELALVP  183 (184)
T ss_dssp             H--HHHCSCCSC
T ss_pred             C--HHHHHHhhC
Confidence            6  457766544

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.44  E-value=9.8e-08  Score=103.67  Aligned_cols=99  Identities=14%  Similarity=0.072  Sum_probs=64.2

Q ss_pred             HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCC-----------CCh--H------HHHHHHHHHHHhhhHHHHH
Q 011003          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-----------FGD--E------EKKQAKALKVACNLNNAAC  457 (496)
Q Consensus       397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~-----------~~~--~------~~~~~~~~~~~~~~N~a~~  457 (496)
                      ..+..+...|+.+.++|+|++|+..|++|+++-+....           ..+  +      ...++++....+|+|+|.+
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~   86 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34566777788888888888888888888876432200           000  0      0112233446677777777


Q ss_pred             HHhccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003          458 KLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       458 ~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      +.++++|++|++.+++||+++|++..||+.+|.+|..+
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~  124 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS  124 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            77777777777777777777777777777777766543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.42  E-value=6.4e-08  Score=79.49  Aligned_cols=73  Identities=18%  Similarity=0.084  Sum_probs=58.2

Q ss_pred             hcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccc
Q 011003          411 KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGR  490 (496)
Q Consensus       411 k~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~  490 (496)
                      ..|+|.+|+..|.+|+++-..            ++....++.|+|.||+++++|.+|+..++++++++|++..+++.+|.
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   69 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQ------------GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM   69 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCC------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCC------------CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            358899999999999986110            34557889999999999999999999999999999999999999998


Q ss_pred             ccccc
Q 011003          491 FRFGR  495 (496)
Q Consensus       491 a~~~l  495 (496)
                      ++..+
T Consensus        70 ~~~~~   74 (117)
T 3k9i_A           70 VLYNL   74 (117)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            87653

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.40  E-value=1.5e-07  Score=97.17  Aligned_cols=85  Identities=26%  Similarity=0.268  Sum_probs=77.6

Q ss_pred             HHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHH
Q 011003          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKK  474 (496)
Q Consensus       395 ~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  474 (496)
                      +.+.+..+...|+.+++.|+|.+|+..|+++++..+                ...++.++|.|++++++|.+|+..|+++
T Consensus         2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p----------------~~~~~~~la~~~~~~g~~~~A~~~~~~a   65 (514)
T 2gw1_A            2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE----------------DPVFYSNLSACYVSVGDLKKVVEMSTKA   65 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc----------------cHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            567789999999999999999999999999999732                1578999999999999999999999999


Q ss_pred             hcccCCCcchhcccccccccc
Q 011003          475 CESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       475 l~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      ++++|++..+|+++|.++..+
T Consensus        66 l~~~p~~~~~~~~l~~~~~~~   86 (514)
T 2gw1_A           66 LELKPDYSKVLLRRASANEGL   86 (514)
T ss_dssp             HHHCSCCHHHHHHHHHHHHHT
T ss_pred             hccChHHHHHHHHHHHHHHHH
Confidence            999999999999999988654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.39  E-value=6.9e-07  Score=71.90  Aligned_cols=81  Identities=15%  Similarity=0.041  Sum_probs=67.0

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      ..-+.|+.+|+.++|..|+..|.+|++........        ......++.++|.|+.++|++..|+...+++|+++|+
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~--------~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~   78 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEIS--------TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE   78 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC--------SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCC--------cccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence            34478999999999999999999999986432111        1123577899999999999999999999999999999


Q ss_pred             Ccchhcccc
Q 011003          481 KGSGIHSDG  489 (496)
Q Consensus       481 ~~Ka~~rrg  489 (496)
                      +..++..++
T Consensus        79 ~~~~~~n~~   87 (104)
T 2v5f_A           79 HQRANGNLK   87 (104)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHhhHH
Confidence            988876654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.37  E-value=6.1e-08  Score=83.81  Aligned_cols=72  Identities=11%  Similarity=0.036  Sum_probs=63.6

Q ss_pred             hHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHH----------HHHHHHHHHhccc
Q 011003          409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK----------QAEKLCTKKCESS  478 (496)
Q Consensus       409 ~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~----------~Ai~~~~~al~~d  478 (496)
                      .-+.++|++|+..|.+|+++               ++.....|.|++.|++.+++++          +|+..+++||+++
T Consensus        12 ~~r~~~feeA~~~~~~Ai~l---------------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld   76 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYKS---------------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID   76 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhHHHHHHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC
Confidence            33567899999999999998               4445889999999999998764          9999999999999


Q ss_pred             CCCcchhcccccccccc
Q 011003          479 VQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       479 p~~~Ka~~rrg~a~~~l  495 (496)
                      |++..|||.+|.||..+
T Consensus        77 P~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           77 PKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHh
Confidence            99999999999998753

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.34  E-value=1.9e-07  Score=85.73  Aligned_cols=80  Identities=18%  Similarity=0.074  Sum_probs=72.3

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp  479 (496)
                      ..+...|..+++.|+|.+|+..|+++++.-+               ....++.|+|.++.++|++.+|+..++++++++|
T Consensus         6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P   70 (217)
T 2pl2_A            6 QNPLRLGVQLYALGRYDAALTLFERALKENP---------------QDPEALYWLARTQLKLGLVNPALENGKTLVARTP   70 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS---------------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            3456789999999999999999999999843               3378899999999999999999999999999999


Q ss_pred             CCcchhccccccccc
Q 011003          480 QKGSGIHSDGRFRFG  494 (496)
Q Consensus       480 ~~~Ka~~rrg~a~~~  494 (496)
                      ++..+++.+|.++..
T Consensus        71 ~~~~a~~~lg~~~~~   85 (217)
T 2pl2_A           71 RYLGGYMVLSEAYVA   85 (217)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHH
Confidence            999999999988764

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.33  E-value=1.7e-07  Score=94.24  Aligned_cols=93  Identities=8%  Similarity=-0.096  Sum_probs=48.2

Q ss_pred             hhHHhhhhhHhccc-HHHHHHHHHHHhhhhccC--------------CCCChH-----HHHHHHHHHHHhhhHHHHHHHh
Q 011003          401 KKKEQGNTLFKAGK-YARASKRYEKAVKYIEYD--------------TSFGDE-----EKKQAKALKVACNLNNAACKLK  460 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~-y~~A~~~Y~~al~~~~~~--------------~~~~~~-----~~~~~~~~~~~~~~N~a~~~~k  460 (496)
                      .+..+|..+++.|+ |.+|+..|.+|+++-+..              ....+.     ...++++....+|.||+.|+.+
T Consensus       133 a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~  212 (382)
T 2h6f_A          133 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE  212 (382)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH
Confidence            34556677777775 777777777777753221              000100     0112223334455555555555


Q ss_pred             ccCHHHHHHHHHHHhcccCCCcchhcccccccc
Q 011003          461 LKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRF  493 (496)
Q Consensus       461 l~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~  493 (496)
                      +++|.+|+.+++++|+++|+|..||+.+|.+|.
T Consensus       213 ~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~  245 (382)
T 2h6f_A          213 FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVIS  245 (382)
T ss_dssp             HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            555555555555555555555555555555543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.32  E-value=2.1e-07  Score=80.51  Aligned_cols=78  Identities=13%  Similarity=0.115  Sum_probs=65.7

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+...|..+++.|+|.+|+..|.+|+++-+.+               ..+|.|+|.||+++|++.+|+..+++||+++
T Consensus        70 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~---------------~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A           70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND---------------YTPVFHTGQCQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC---------------CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC---------------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            3345678999999999999999999999984433               6789999999999999999999999999999


Q ss_pred             CCCcchhcccccccc
Q 011003          479 VQKGSGIHSDGRFRF  493 (496)
Q Consensus       479 p~~~Ka~~rrg~a~~  493 (496)
                      |+..  +-.+|+.++
T Consensus       135 ~~~~--~~~~A~~ll  147 (151)
T 3gyz_A          135 NDEK--LKIKAQSYL  147 (151)
T ss_dssp             CCHH--HHHHHHHHH
T ss_pred             CCHH--HHHHHHHHH
Confidence            9864  555555544

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.32  E-value=2.6e-07  Score=92.82  Aligned_cols=96  Identities=10%  Similarity=-0.043  Sum_probs=60.2

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCC-----------CCC---hH------HHHHHHHHHHHhhhHHHHH
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-----------SFG---DE------EKKQAKALKVACNLNNAAC  457 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~-----------~~~---~~------~~~~~~~~~~~~~~N~a~~  457 (496)
                      .+..+...|..+++.|+|.+|+..|.+||++-+...           ...   ++      ...++++....+|.||+.+
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~  175 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL  175 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            355566788899999999999999999999743320           000   00      0112223334556666666


Q ss_pred             HHhccCHHHHHHHHHHHhcccCCCcchhcccccccc
Q 011003          458 KLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRF  493 (496)
Q Consensus       458 ~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~  493 (496)
                      +.++++|.+|+.+|++||+++|+|..||+.+|.++.
T Consensus       176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~  211 (382)
T 2h6f_A          176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQ  211 (382)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHH
Confidence            666666666666666666666666666666665554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.31  E-value=3.2e-07  Score=99.61  Aligned_cols=97  Identities=11%  Similarity=-0.002  Sum_probs=72.2

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCC-----------CCh--H------HHHHHHHHHHHhhhHHHHHHHh
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-----------FGD--E------EKKQAKALKVACNLNNAACKLK  460 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~-----------~~~--~------~~~~~~~~~~~~~~N~a~~~~k  460 (496)
                      ..+...|+.+++.|+|++|+..|++|+++-+....           ..+  +      ...++++....+|+|+|.+|.+
T Consensus        44 ~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~  123 (723)
T 4gyw_A           44 AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD  123 (723)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34456677777788888888888888776332100           000  0      1122344557889999999999


Q ss_pred             ccCHHHHHHHHHHHhcccCCCcchhccccccccccC
Q 011003          461 LKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGRV  496 (496)
Q Consensus       461 l~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l~  496 (496)
                      +|++++|+..+++||+++|++..+|+.+|.+|..++
T Consensus       124 ~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g  159 (723)
T 4gyw_A          124 SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVC  159 (723)
T ss_dssp             TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcc
Confidence            999999999999999999999999999999887653

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.28  E-value=5.7e-07  Score=82.54  Aligned_cols=79  Identities=11%  Similarity=-0.031  Sum_probs=68.5

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .+...|..++..|++.+|+..|++|+++- .               ...++.|+|.++.++|++.+|+..++++++++|+
T Consensus       120 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~  183 (217)
T 2pl2_A          120 LHLQRGLVYALLGERDKAEASLKQALALE-D---------------TPEIRSALAELYLSMGRLDEALAQYAKALEQAPK  183 (217)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcc-c---------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            34567888889999999999999999873 2               2677899999999999999999999999999999


Q ss_pred             Ccchhcccccccccc
Q 011003          481 KGSGIHSDGRFRFGR  495 (496)
Q Consensus       481 ~~Ka~~rrg~a~~~l  495 (496)
                      +..+++.+|.++..+
T Consensus       184 ~~~~~~~la~~~~~~  198 (217)
T 2pl2_A          184 DLDLRVRYASALLLK  198 (217)
T ss_dssp             CHHHHHHHHHHHTC-
T ss_pred             ChHHHHHHHHHHHHc
Confidence            999999999887654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.27  E-value=4.3e-07  Score=80.41  Aligned_cols=79  Identities=14%  Similarity=0.050  Sum_probs=54.2

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +.-+...|+.++++|+|++|+..|++|+++-+.               ...++.++|.||.+++++.+|+..+.+++..+
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~   69 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN---------------NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD   69 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            345667899999999999999999999998332               24555566666666666666666666666666


Q ss_pred             CCCcchhccccccc
Q 011003          479 VQKGSGIHSDGRFR  492 (496)
Q Consensus       479 p~~~Ka~~rrg~a~  492 (496)
                      |++..+++..|.++
T Consensus        70 ~~~~~~~~~~~~~~   83 (184)
T 3vtx_A           70 TTSAEAYYILGSAN   83 (184)
T ss_dssp             CCCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHH
Confidence            66655555555433

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.27  E-value=8.9e-07  Score=73.12  Aligned_cols=80  Identities=15%  Similarity=0.089  Sum_probs=70.4

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp  479 (496)
                      ..+...|..++..++|.+|+..|.++++..+.               ...++.|+|.|++++++|.+|+..++++++++|
T Consensus        51 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p  115 (133)
T 2lni_A           51 KLYSNRAACYTKLLEFQLALKDCEECIQLEPT---------------FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS  115 (133)
T ss_dssp             HHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---------------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence            34566788889999999999999999997433               267899999999999999999999999999999


Q ss_pred             CCcchhccccccccc
Q 011003          480 QKGSGIHSDGRFRFG  494 (496)
Q Consensus       480 ~~~Ka~~rrg~a~~~  494 (496)
                      ++..+++..+.++..
T Consensus       116 ~~~~~~~~l~~~~~~  130 (133)
T 2lni_A          116 SCKEAADGYQRCMMA  130 (133)
T ss_dssp             GGTHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHH
Confidence            999999999888764

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.26  E-value=1.1e-06  Score=76.01  Aligned_cols=77  Identities=14%  Similarity=0.007  Sum_probs=64.1

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhh----hHHHHHHHhccCHHHHHHHHHHH
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACN----LNNAACKLKLKDYKQAEKLCTKK  474 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~----~N~a~~~~kl~~~~~Ai~~~~~a  474 (496)
                      +..+-.+|..+.+.|+|++|+..|.+||++++...+.++        ....+|    +|++.|+.++++|.+|+.++++|
T Consensus        57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p--------d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA  128 (159)
T 2hr2_A           57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ--------DEGKLWISAVYSRALALDGLGRGAEAMPEFKKV  128 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS--------THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC--------chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence            447888999999999999999999999998544333322        235556    99999999999999999999999


Q ss_pred             hcccCCCcc
Q 011003          475 CESSVQKGS  483 (496)
Q Consensus       475 l~~dp~~~K  483 (496)
                      |+++|++.-
T Consensus       129 lel~p~d~~  137 (159)
T 2hr2_A          129 VEMIEERKG  137 (159)
T ss_dssp             HHHHHHCCS
T ss_pred             HhcCCCcHH
Confidence            999998753

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.26  E-value=4.5e-07  Score=75.04  Aligned_cols=79  Identities=13%  Similarity=0.029  Sum_probs=68.4

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc-
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS-  478 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d-  478 (496)
                      ..+...|..+++.|+|.+|+..|.+++++-+               ....++.|+|.|+.++++|.+|+.++.++++++ 
T Consensus        39 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  103 (126)
T 3upv_A           39 RGYSNRAAALAKLMSFPEAIADCNKAIEKDP---------------NFVRAYIRKATAQIAVKEYASALETLDAARTKDA  103 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---------------CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCc
Confidence            4566789999999999999999999999833               337789999999999999999999999999999 


Q ss_pred             -----CCCcchhcccccccc
Q 011003          479 -----VQKGSGIHSDGRFRF  493 (496)
Q Consensus       479 -----p~~~Ka~~rrg~a~~  493 (496)
                           |++..++...+++..
T Consensus       104 ~~~~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A          104 EVNNGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             HHHTTTTHHHHHHHHHHHHH
T ss_pred             ccCCchhHHHHHHHHHHHHH
Confidence                 988887777666543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.25  E-value=9.1e-07  Score=81.55  Aligned_cols=82  Identities=10%  Similarity=0.056  Sum_probs=70.7

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp  479 (496)
                      ..+...|..+++.|+|.+|+..|+++++..+..            +....++.++|.||+++++|.+|+..++++++++|
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~------------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P   72 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFG------------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP   72 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc
Confidence            456678999999999999999999999875432            22356789999999999999999999999999999


Q ss_pred             CCcc---hhcccccccc
Q 011003          480 QKGS---GIHSDGRFRF  493 (496)
Q Consensus       480 ~~~K---a~~rrg~a~~  493 (496)
                      ++..   |+|++|.++.
T Consensus        73 ~~~~~~~a~~~~g~~~~   89 (225)
T 2yhc_A           73 THPNIDYVMYMRGLTNM   89 (225)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHH
Confidence            9987   8999998764

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.25  E-value=9.9e-07  Score=79.86  Aligned_cols=80  Identities=14%  Similarity=0.089  Sum_probs=66.9

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      .+..+...|+.++..|+|.+|+..|.+++..                  ...++.|+|.||+++++|.+|+..+++++++
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   66 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQDP------------------HSRICFNIGCMYTILKNMTEAEKAFTRSINR   66 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSSC------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3455678899999999999999999988521                  1458889999999999999999999999999


Q ss_pred             cCCCcchhcccccccccc
Q 011003          478 SVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       478 dp~~~Ka~~rrg~a~~~l  495 (496)
                      +|++..+|+.+|.++..+
T Consensus        67 ~~~~~~~~~~lg~~~~~~   84 (213)
T 1hh8_A           67 DKHLAVAYFQRGMLYYQT   84 (213)
T ss_dssp             CTTCHHHHHHHHHHHHHT
T ss_pred             CccchHHHHHHHHHHHHc
Confidence            999999999998887653

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.22  E-value=9.1e-07  Score=80.11  Aligned_cols=81  Identities=7%  Similarity=-0.058  Sum_probs=70.9

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp  479 (496)
                      ..+...|..+++.|+|.+|+..|.+|++..+.               ...++.|+|.||+++++|.+|+..+++++++.|
T Consensus        38 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~  102 (213)
T 1hh8_A           38 RICFNIGCMYTILKNMTEAEKAFTRSINRDKH---------------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR  102 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---------------chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Confidence            45677899999999999999999999998432               367899999999999999999999999999998


Q ss_pred             CCc----------------chhcccccccccc
Q 011003          480 QKG----------------SGIHSDGRFRFGR  495 (496)
Q Consensus       480 ~~~----------------Ka~~rrg~a~~~l  495 (496)
                      ++.                .+++.+|.++..+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  134 (213)
T 1hh8_A          103 GNQLIDYKILGLQFKLFACEVLYNIAFMYAKK  134 (213)
T ss_dssp             TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT
T ss_pred             CccHHHHHHhccccCccchHHHHHHHHHHHHc
Confidence            887                8889888877653

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.20  E-value=3.5e-06  Score=68.83  Aligned_cols=74  Identities=20%  Similarity=0.156  Sum_probs=64.8

Q ss_pred             HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE  476 (496)
Q Consensus       397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  476 (496)
                      .....+...|..+++.|+|.+|+..|.++++..+..               ..++.|+|.|+.++|++.+|+..+.++|+
T Consensus        25 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~   89 (117)
T 3k9i_A           25 DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH---------------QALRVFYAMVLYNLGRYEQGVELLLKIIA   89 (117)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345567788999999999999999999999984433               77899999999999999999999999999


Q ss_pred             ccCCCcchh
Q 011003          477 SSVQKGSGI  485 (496)
Q Consensus       477 ~dp~~~Ka~  485 (496)
                      ++|++....
T Consensus        90 ~~p~~~~~~   98 (117)
T 3k9i_A           90 ETSDDETIQ   98 (117)
T ss_dssp             HHCCCHHHH
T ss_pred             hCCCcHHHH
Confidence            999987643

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.19  E-value=6.7e-07  Score=71.22  Aligned_cols=70  Identities=14%  Similarity=0.060  Sum_probs=60.5

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp  479 (496)
                      ..+...|..+++.|+|.+|+..|++++++-+.               ...+|.|+|.||.++++|.+|+..+++++++.|
T Consensus         8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A            8 FTRYALAQEHLKHDNASRALALFEELVETDPD---------------YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence            44567899999999999999999999998433               366899999999999999999999999999987


Q ss_pred             CCcch
Q 011003          480 QKGSG  484 (496)
Q Consensus       480 ~~~Ka  484 (496)
                      .+...
T Consensus        73 ~~~~~   77 (100)
T 3ma5_A           73 EEGTQ   77 (100)
T ss_dssp             HHSCH
T ss_pred             cCCch
Confidence            65443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.19  E-value=1.9e-06  Score=79.18  Aligned_cols=88  Identities=10%  Similarity=0.060  Sum_probs=72.0

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      ...+...|..+++.|+|.+|+..|+++++..+..        ..+......+|.|++.++.++++|.+|+..++++|+++
T Consensus        76 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~  147 (228)
T 4i17_A           76 ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN--------ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT  147 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc--------HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC
Confidence            3445667888888888888888888888874432        22344456789999999999999999999999999999


Q ss_pred             CC--Ccchhccccccccc
Q 011003          479 VQ--KGSGIHSDGRFRFG  494 (496)
Q Consensus       479 p~--~~Ka~~rrg~a~~~  494 (496)
                      |+  +..+|+.+|.+++.
T Consensus       148 p~~~~~~~~~~l~~~~~~  165 (228)
T 4i17_A          148 SKKWKTDALYSLGVLFYN  165 (228)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHH
Confidence            99  99999999988754

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.18  E-value=9.5e-07  Score=75.91  Aligned_cols=70  Identities=16%  Similarity=0.032  Sum_probs=61.4

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .+...|..+++.|+|.+|+..|.+|+++-+.               ...++.|+|.||+.+|++.+|+..++++++++|+
T Consensus        57 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  121 (148)
T 2vgx_A           57 FFLGLGACRQAMGQYDLAIHSYSYGAVMDIX---------------EPRFPFHAAECLLQXGELAEAESGLFLAQELIAN  121 (148)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---------------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            3456788899999999999999999998433               3678899999999999999999999999999999


Q ss_pred             Ccchh
Q 011003          481 KGSGI  485 (496)
Q Consensus       481 ~~Ka~  485 (496)
                      ++...
T Consensus       122 ~~~~~  126 (148)
T 2vgx_A          122 XPEFX  126 (148)
T ss_dssp             CGGGH
T ss_pred             CCcch
Confidence            87653

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.18  E-value=7.8e-07  Score=75.59  Aligned_cols=75  Identities=17%  Similarity=0.105  Sum_probs=63.8

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .+...|..+++.|+|.+|+..|.+|+++-+.               ...++.|+|.||+.+|+|.+|+..++++++++|+
T Consensus        54 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  118 (142)
T 2xcb_A           54 YFLGLGACRQSLGLYEQALQSYSYGALMDIN---------------EPRFPFHAAECHLQLGDLDGAESGFYSARALAAA  118 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            3456788899999999999999999998433               3677899999999999999999999999999999


Q ss_pred             Ccchhccccc
Q 011003          481 KGSGIHSDGR  490 (496)
Q Consensus       481 ~~Ka~~rrg~  490 (496)
                      ++.....+.+
T Consensus       119 ~~~~~~~~~~  128 (142)
T 2xcb_A          119 QPAHEALAAR  128 (142)
T ss_dssp             CGGGHHHHHH
T ss_pred             CcchHHHHHH
Confidence            8766554433

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.17  E-value=1.1e-06  Score=76.41  Aligned_cols=72  Identities=10%  Similarity=0.033  Sum_probs=63.9

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      .+..+...|..+++.|+|.+|+..|.+|+++               ++....+|.++|.||+.+++|.+|+.++.++|++
T Consensus        62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~---------------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKR---------------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---------------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            3456677899999999999999999999998               3334789999999999999999999999999999


Q ss_pred             cCCCcch
Q 011003          478 SVQKGSG  484 (496)
Q Consensus       478 dp~~~Ka  484 (496)
                      +|+|..+
T Consensus       127 ~p~~~~~  133 (162)
T 3rkv_A          127 HPAAASV  133 (162)
T ss_dssp             CGGGHHH
T ss_pred             CCCCHHH
Confidence            9998743

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.17  E-value=2.7e-06  Score=69.64  Aligned_cols=79  Identities=14%  Similarity=-0.032  Sum_probs=69.5

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .+...|..++..|+|.+|+..|.++++..+..               ..++.++|.++.++++|.+|+..++++++++|+
T Consensus        48 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  112 (131)
T 2vyi_A           48 YFCNRAAAYSKLGNYAGAVQDCERAICIDPAY---------------SKAYGRMGLALSSLNKHVEAVAYYKKALELDPD  112 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHhcCccC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc
Confidence            44567888899999999999999999973322               568899999999999999999999999999999


Q ss_pred             Ccchhccccccccc
Q 011003          481 KGSGIHSDGRFRFG  494 (496)
Q Consensus       481 ~~Ka~~rrg~a~~~  494 (496)
                      +..+++..|.++..
T Consensus       113 ~~~~~~~l~~~~~~  126 (131)
T 2vyi_A          113 NETYKSNLKIAELK  126 (131)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHH
Confidence            99999999888754

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.16  E-value=3.5e-06  Score=68.31  Aligned_cols=47  Identities=17%  Similarity=0.114  Sum_probs=36.7

Q ss_pred             HHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003          448 VACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       448 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~  494 (496)
                      ..++.++|.++.+++++.+|+..++++++++|++..+++.+|.++..
T Consensus        77 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           77 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            45677888888888888888888888888888888888877776543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.15  E-value=3.1e-06  Score=78.38  Aligned_cols=82  Identities=20%  Similarity=0.212  Sum_probs=70.9

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+...|..++..|+|.+|+..|.++++..+.               ...++.++|.|++++++|.+|+..++++++++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  203 (258)
T 3uq3_A          139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE---------------DARGYSNRAAALAKLMSFPEAIADCNKAIEKD  203 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc---------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            345567888899999999999999999987433               25789999999999999999999999999999


Q ss_pred             CCCcchhcccccccccc
Q 011003          479 VQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       479 p~~~Ka~~rrg~a~~~l  495 (496)
                      |++..+|+.+|.++..+
T Consensus       204 ~~~~~~~~~l~~~~~~~  220 (258)
T 3uq3_A          204 PNFVRAYIRKATAQIAV  220 (258)
T ss_dssp             TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999887653

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.14  E-value=1.3e-06  Score=78.48  Aligned_cols=80  Identities=11%  Similarity=-0.035  Sum_probs=70.6

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+...|..+++.|+|.+|+..|.+++++.+.               ...++.++|.||+++++|.+|+..+.++++++
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  152 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN---------------NVKALYKLGVANMYFGFLEEAKENLYKAASLN  152 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc---------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence            456677899999999999999999999998332               36789999999999999999999999999999


Q ss_pred             CCCcchhcccccccc
Q 011003          479 VQKGSGIHSDGRFRF  493 (496)
Q Consensus       479 p~~~Ka~~rrg~a~~  493 (496)
                      |++..++...+.++.
T Consensus       153 p~~~~~~~~l~~~~~  167 (198)
T 2fbn_A          153 PNNLDIRNSYELCVN  167 (198)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHH
Confidence            999998888776654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.14  E-value=4.5e-06  Score=66.96  Aligned_cols=77  Identities=13%  Similarity=0.035  Sum_probs=67.5

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .+...|..++..|+|.+|+..|.++++..+.               ...++.|+|.++.+++++.+|+..+.++++++|+
T Consensus        40 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~  104 (118)
T 1elw_A           40 LYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD---------------WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN  104 (118)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhCcc---------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence            4556788889999999999999999998433               2668899999999999999999999999999999


Q ss_pred             Ccchhccccccc
Q 011003          481 KGSGIHSDGRFR  492 (496)
Q Consensus       481 ~~Ka~~rrg~a~  492 (496)
                      +..+++..+.+.
T Consensus       105 ~~~~~~~l~~~~  116 (118)
T 1elw_A          105 NPQLKEGLQNME  116 (118)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhh
Confidence            999998877654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.09  E-value=2.4e-06  Score=70.57  Aligned_cols=70  Identities=14%  Similarity=-0.087  Sum_probs=55.5

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+...|..++..|++.+|+..|.+|+++-+               ....++.|+|.||.++|++.+|+..++++|+++
T Consensus        51 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           51 EEAWRSLGLTQAENEKDGLAIIALNHARMLDP---------------KDIAVHAALAVSHTNEHNANAALASLRAWLLSQ  115 (121)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            33455688889999999999999999999843               336789999999999999999999999999999


Q ss_pred             CCCcc
Q 011003          479 VQKGS  483 (496)
Q Consensus       479 p~~~K  483 (496)
                      |++.+
T Consensus       116 P~~~~  120 (121)
T 1hxi_A          116 PQYEQ  120 (121)
T ss_dssp             -----
T ss_pred             cCCCC
Confidence            98765

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.08  E-value=2.4e-06  Score=75.14  Aligned_cols=80  Identities=10%  Similarity=0.019  Sum_probs=62.4

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHH-HHhccCH--HHHHHHHHHHhc
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAAC-KLKLKDY--KQAEKLCTKKCE  476 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~-~~kl~~~--~~Ai~~~~~al~  476 (496)
                      ..+...|..++..|+|.+|+..|.+++++.+..               ..++.++|.+ +++.+++  .+|+..++++++
T Consensus        45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~  109 (177)
T 2e2e_A           45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN---------------AELYAALATVLYYQASQHMTAQTRAMIDKALA  109 (177)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC---------------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            456678889999999999999999999984332               5567777777 7777777  788888888888


Q ss_pred             ccCCCcchhccccccccc
Q 011003          477 SSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       477 ~dp~~~Ka~~rrg~a~~~  494 (496)
                      ++|++..+++.+|.++..
T Consensus       110 ~~p~~~~~~~~la~~~~~  127 (177)
T 2e2e_A          110 LDSNEITALMLLASDAFM  127 (177)
T ss_dssp             HCTTCHHHHHHHHHHHHH
T ss_pred             hCCCcHHHHHHHHHHHHH
Confidence            888777777777766653

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.08  E-value=3.1e-06  Score=79.59  Aligned_cols=84  Identities=13%  Similarity=0.126  Sum_probs=72.1

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+...|..+++.|+|.+|+..|.++++..+..            +....++.++|.||+++++|.+|+..++++++++
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~------------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~   82 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH------------EWAADAQFYLARAYYQNKEYLLAASEYERFIQIY   82 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------------cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC
Confidence            4567789999999999999999999999975432            2336789999999999999999999999999998


Q ss_pred             CCC---cchhccccccccc
Q 011003          479 VQK---GSGIHSDGRFRFG  494 (496)
Q Consensus       479 p~~---~Ka~~rrg~a~~~  494 (496)
                      |++   ..++|++|.+++.
T Consensus        83 p~~~~~~~a~~~lg~~~~~  101 (261)
T 3qky_A           83 QIDPRVPQAEYERAMCYYK  101 (261)
T ss_dssp             TTCTTHHHHHHHHHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHH
Confidence            865   5689999988754

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.08  E-value=5.3e-06  Score=67.22  Aligned_cols=81  Identities=22%  Similarity=0.247  Sum_probs=70.7

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+...|..++..|+|.+|+..|.++++..+..               ..++.++|.++.++++|.+|+..++++++++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   73 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD   73 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            3456678889999999999999999999874322               5678899999999999999999999999999


Q ss_pred             CCCcchhccccccccc
Q 011003          479 VQKGSGIHSDGRFRFG  494 (496)
Q Consensus       479 p~~~Ka~~rrg~a~~~  494 (496)
                      |++..+++..|.++..
T Consensus        74 ~~~~~~~~~la~~~~~   89 (125)
T 1na0_A           74 PNNAEAWYNLGNAYYK   89 (125)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHH
Confidence            9999999998887754

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.08  E-value=1.7e-06  Score=74.68  Aligned_cols=74  Identities=11%  Similarity=0.153  Sum_probs=60.6

Q ss_pred             HhhhHHhhhhhHhcccH----------HHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhcc------
Q 011003          399 AGKKKEQGNTLFKAGKY----------ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK------  462 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y----------~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~------  462 (496)
                      +..+...|+.+...+++          ++|+..|++||++               ++....+|.|++.+|.+++      
T Consensus        36 aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---------------dP~~~~A~~~LG~ay~~lg~l~P~~  100 (158)
T 1zu2_A           36 ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---------------DPKKDEAVWCIGNAYTSFAFLTPDE  100 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---------------CcCcHHHHHHHHHHHHHhcccCcch
Confidence            44556677777777665          5999999999998               5555889999999999985      


Q ss_pred             -----CHHHHHHHHHHHhcccCCCcchhcccc
Q 011003          463 -----DYKQAEKLCTKKCESSVQKGSGIHSDG  489 (496)
Q Consensus       463 -----~~~~Ai~~~~~al~~dp~~~Ka~~rrg  489 (496)
                           +|.+|+.++++||+++|+|.  .|+++
T Consensus       101 ~~a~g~~~eA~~~~~kAl~l~P~~~--~y~~a  130 (158)
T 1zu2_A          101 TEAKHNFDLATQFFQQAVDEQPDNT--HYLKS  130 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCH--HHHHH
T ss_pred             hhhhccHHHHHHHHHHHHHhCCCCH--HHHHH
Confidence                 89999999999999999985  44444

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.07  E-value=5.8e-06  Score=77.52  Aligned_cols=83  Identities=12%  Similarity=-0.064  Sum_probs=70.8

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      .+..+...|..++..|+|.+|+..|.++++..+..               ..++.++|.+|.++++|.+|+..+++++++
T Consensus        42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~  106 (275)
T 1xnf_A           42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM---------------PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL  106 (275)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            35566678999999999999999999999984332               667889999999999999999999999999


Q ss_pred             cCCCcchhcccccccccc
Q 011003          478 SVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       478 dp~~~Ka~~rrg~a~~~l  495 (496)
                      +|++..+|+.+|.++..+
T Consensus       107 ~~~~~~~~~~la~~~~~~  124 (275)
T 1xnf_A          107 DPTYNYAHLNRGIALYYG  124 (275)
T ss_dssp             CTTCTHHHHHHHHHHHHT
T ss_pred             CccccHHHHHHHHHHHHh
Confidence            999999999988887643

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.06  E-value=1.4e-05  Score=66.56  Aligned_cols=74  Identities=15%  Similarity=0.060  Sum_probs=61.8

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+...|..+++.|+|.+|+..|.+|+++.+....        .......+|.|++.|+.++++|.+|++.+.++|+.+
T Consensus        42 ~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~  113 (127)
T 4gcn_A           42 ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA--------DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF  113 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch--------hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            345667899999999999999999999998543211        134557789999999999999999999999999988


Q ss_pred             CC
Q 011003          479 VQ  480 (496)
Q Consensus       479 p~  480 (496)
                      |+
T Consensus       114 ~~  115 (127)
T 4gcn_A          114 RD  115 (127)
T ss_dssp             CC
T ss_pred             cC
Confidence            75

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.05  E-value=2.4e-06  Score=85.41  Aligned_cols=80  Identities=15%  Similarity=0.002  Sum_probs=69.3

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+...|..+++.++|.+|+..|++|+++-+               ....+|.|+|.||+++++|.+|+.++++|++++
T Consensus       273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~  337 (370)
T 1ihg_A          273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDP---------------SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA  337 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc---------------hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            34455688889999999999999999999733               337889999999999999999999999999999


Q ss_pred             CCCcchhcccccccc
Q 011003          479 VQKGSGIHSDGRFRF  493 (496)
Q Consensus       479 p~~~Ka~~rrg~a~~  493 (496)
                      |++..++...+.++.
T Consensus       338 P~~~~~~~~l~~~~~  352 (370)
T 1ihg_A          338 PEDKAIQAELLKVKQ  352 (370)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999988887776653

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.05  E-value=4.4e-06  Score=80.19  Aligned_cols=89  Identities=16%  Similarity=0.098  Sum_probs=73.0

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+...|+.++..|+|.+|+..|.+|++.+.....        .......++.|+|.+|.++++|.+|+..+++||++.
T Consensus       155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~  226 (293)
T 3u3w_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD--------NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS  226 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc--------chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            445677899999999999999999999987643211        145668899999999999999999999999999987


Q ss_pred             CCC------cchhcccccccccc
Q 011003          479 VQK------GSGIHSDGRFRFGR  495 (496)
Q Consensus       479 p~~------~Ka~~rrg~a~~~l  495 (496)
                      +.+      ..+|+.+|.++..+
T Consensus       227 ~~~~~~~~~~~~~~~lg~~~~~~  249 (293)
T 3u3w_A          227 CRINSMALIGQLYYQRGECLRKL  249 (293)
T ss_dssp             HHTTBCTTHHHHHHHHHHHHHHT
T ss_pred             HHcCcHHHHHHHHHHHHHHHHHh
Confidence            654      67888888877654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.04  E-value=3.3e-06  Score=78.17  Aligned_cols=83  Identities=23%  Similarity=0.283  Sum_probs=73.6

Q ss_pred             HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE  476 (496)
Q Consensus       397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  476 (496)
                      ..+..+...|+.++..|+|.+|+..|.++++.. ..               ..++.++|.|+.++++|.+|+..++++++
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~   66 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD---------------ITYLNNRAAAEYEKGEYETAISTLNDAVE   66 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC---------------THHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            357788999999999999999999999999984 22               56899999999999999999999999999


Q ss_pred             ccCCC-------cchhcccccccccc
Q 011003          477 SSVQK-------GSGIHSDGRFRFGR  495 (496)
Q Consensus       477 ~dp~~-------~Ka~~rrg~a~~~l  495 (496)
                      ++|++       ..+|+.+|.++..+
T Consensus        67 ~~~~~~~~~~~~~~~~~~l~~~~~~~   92 (258)
T 3uq3_A           67 QGREMRADYKVISKSFARIGNAYHKL   92 (258)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             hCcccccchHHHHHHHHHHHHHHHHc
Confidence            99987       68999988887643

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.03  E-value=1e-05  Score=67.97  Aligned_cols=79  Identities=15%  Similarity=0.028  Sum_probs=68.2

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      ...+...|..++..++|.+|+..|.++++..+..               ..++.|+|.|+.++++|.+|+..+.++++++
T Consensus        65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  129 (148)
T 2dba_A           65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD---------------VKALYRRSQALEKLGRLDQAVLDLQRCVSLE  129 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            4556677888999999999999999999984332               6788999999999999999999999999999


Q ss_pred             CCCcchhccccccc
Q 011003          479 VQKGSGIHSDGRFR  492 (496)
Q Consensus       479 p~~~Ka~~rrg~a~  492 (496)
                      |++..++...+++.
T Consensus       130 p~~~~~~~~l~~~~  143 (148)
T 2dba_A          130 PKNKVFQEALRNIS  143 (148)
T ss_dssp             SSCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHH
Confidence            99998887766554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.02  E-value=2.7e-06  Score=82.82  Aligned_cols=81  Identities=21%  Similarity=0.141  Sum_probs=71.6

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+...|+.++..|+|.+|+..|.++++..+.               ...++.++|.|++.+++|.+|+..++++++++
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~   67 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---------------NYIAYYRRATVFLAMGKSKAALPDLTKVIALK   67 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            456778999999999999999999999997433               25789999999999999999999999999999


Q ss_pred             CCCcchhccccccccc
Q 011003          479 VQKGSGIHSDGRFRFG  494 (496)
Q Consensus       479 p~~~Ka~~rrg~a~~~  494 (496)
                      |++..+++.+|.++..
T Consensus        68 ~~~~~~~~~l~~~~~~   83 (359)
T 3ieg_A           68 MDFTAARLQRGHLLLK   83 (359)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHH
Confidence            9999999999887754

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.99  E-value=2.9e-06  Score=91.90  Aligned_cols=79  Identities=14%  Similarity=0.054  Sum_probs=63.4

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .+...|..+++.|+|++|+..|+++++.-+               ....+|.|+|.+|+++++|.+|+.++++||+++|+
T Consensus       435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  499 (681)
T 2pzi_A          435 LPLMEVRALLDLGDVAKATRKLDDLAERVG---------------WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG  499 (681)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHC---------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhccCc---------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            345678888999999999999999999843               33667888888888888888888888888888888


Q ss_pred             Ccchhccccccccc
Q 011003          481 KGSGIHSDGRFRFG  494 (496)
Q Consensus       481 ~~Ka~~rrg~a~~~  494 (496)
                      +..+|+.+|.++..
T Consensus       500 ~~~~~~~lg~~~~~  513 (681)
T 2pzi_A          500 ELAPKLALAATAEL  513 (681)
T ss_dssp             CSHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHH
Confidence            88888887777654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.99  E-value=1.3e-05  Score=77.95  Aligned_cols=83  Identities=17%  Similarity=0.228  Sum_probs=62.7

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .....|+.+++.|+|.+|+..|.++++..+..           ......++.++|.|+.+++++.+|+..++++++++|+
T Consensus       236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  304 (359)
T 3ieg_A          236 KLIESAEELIRDGRYTDATSKYESVMKTEPSV-----------AEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD  304 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-----------hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            34456888999999999999999999875443           3344556777777777888888888888888777777


Q ss_pred             Ccchhccccccccc
Q 011003          481 KGSGIHSDGRFRFG  494 (496)
Q Consensus       481 ~~Ka~~rrg~a~~~  494 (496)
                      +..+|+.+|.++..
T Consensus       305 ~~~~~~~~~~~~~~  318 (359)
T 3ieg_A          305 NVNALKDRAEAYLI  318 (359)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH
Confidence            77777777776654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.98  E-value=6.4e-06  Score=81.17  Aligned_cols=81  Identities=10%  Similarity=-0.111  Sum_probs=69.0

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp  479 (496)
                      ..+...|..+++.|+|.+|+..|+++++..+.               ...++.+++.+|.++++|.+|+..++++++++|
T Consensus        66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  130 (365)
T 4eqf_A           66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPG---------------DAEAWQFLGITQAENENEQAAIVALQRCLELQP  130 (365)
T ss_dssp             TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            44667889999999999999999999987433               266788999999999999999999999999999


Q ss_pred             CCcchhcccccccccc
Q 011003          480 QKGSGIHSDGRFRFGR  495 (496)
Q Consensus       480 ~~~Ka~~rrg~a~~~l  495 (496)
                      ++..+|+.+|.+|..+
T Consensus       131 ~~~~~~~~l~~~~~~~  146 (365)
T 4eqf_A          131 NNLKALMALAVSYTNT  146 (365)
T ss_dssp             TCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHcc
Confidence            9999999888877543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.96  E-value=7.1e-06  Score=78.95  Aligned_cols=47  Identities=11%  Similarity=0.070  Sum_probs=43.7

Q ss_pred             HHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003          448 VACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       448 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~  494 (496)
                      ..+++|+|.|++++|+|.+|+..++++|+++|+|+.+|+.+|.++..
T Consensus       200 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~  246 (291)
T 3mkr_A          200 LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH  246 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999877654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.92  E-value=1.7e-05  Score=80.31  Aligned_cols=83  Identities=17%  Similarity=0.221  Sum_probs=61.8

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .....|+.+++.|+|.+|+..|.++++..+..           ......++.++|.++.+++++.+|+..|+++++++|+
T Consensus       259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~  327 (450)
T 2y4t_A          259 KLIESAEELIRDGRYTDATSKYESVMKTEPSI-----------AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD  327 (450)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSS-----------HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc-----------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            34556999999999999999999999875432           2333556777777777777777777777777777777


Q ss_pred             Ccchhccccccccc
Q 011003          481 KGSGIHSDGRFRFG  494 (496)
Q Consensus       481 ~~Ka~~rrg~a~~~  494 (496)
                      +..+|+.+|.++..
T Consensus       328 ~~~~~~~l~~~~~~  341 (450)
T 2y4t_A          328 NVNALKDRAEAYLI  341 (450)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH
Confidence            77777777766653

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=97.91  E-value=1.2e-05  Score=81.56  Aligned_cols=88  Identities=14%  Similarity=0.093  Sum_probs=73.2

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCcccCCCCCCCCCCCC
Q 011003           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (496)
Q Consensus        52 ~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~  131 (496)
                      .++.||.|.++|+++ .||..|+++..  .++.+.+|.++  + |+++|.||++|+.+.|.+..              +|
T Consensus       154 ~a~~gD~V~id~~~~-~dG~~~~~~~~--~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~vtF--------------aG  213 (433)
T 3gty_X          154 PAEAGDLVRVNMEVY-NEEGKKLTSRE--YEYVISEDEDR--P-FVKDLVGKKKGDVVEIEREY--------------EG  213 (433)
T ss_dssp             CCCTTSEEEEEEEEE-CTTSCEEEEEE--EEEECCSSCCC--T-THHHHTTCCTTCEEEEEEEE--------------TT
T ss_pred             ccCCCCEEEEEEEEE-ECCEECcCCCC--CCeEEEecCCc--h-HHHHhCCCCCCceEEEEEee--------------CC
Confidence            578999999999998 59999998764  68888999887  4 99999999999999999843              35


Q ss_pred             CceEEEEEEEEEeecceeccCccceeEe
Q 011003          132 ATLQFDVELLSWTSVKDICKDGGIIKKI  159 (496)
Q Consensus       132 ~~l~~~v~l~~~~~~~~~~~d~~~~k~i  159 (496)
                      .+..|.|++.++........|..+.+.+
T Consensus       214 k~a~F~VtV~~Ik~~~lPEldDEfak~~  241 (433)
T 3gty_X          214 KKYTYKLEVEEVYKRTLPEIGDELAKSV  241 (433)
T ss_dssp             EEEEEEEEEEEEEEECCCCSSHHHHHTT
T ss_pred             CeEEEEEEEEEEEEecCCcccHHHHHHh
Confidence            7999999999998766666666666543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.90  E-value=2.1e-06  Score=92.93  Aligned_cols=94  Identities=9%  Similarity=-0.000  Sum_probs=73.8

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCC--------------CCC-h---HHHHHHHHHHHHhhhHHHHHHHhcc
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT--------------SFG-D---EEKKQAKALKVACNLNNAACKLKLK  462 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~--------------~~~-~---~~~~~~~~~~~~~~~N~a~~~~kl~  462 (496)
                      .+...|..+++.|+|++|+..|++|+++-+...              ... .   +...++++....++.|+|.+++++|
T Consensus       469 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~~~~~~~al~~~P~~~~a~~~lg~~~~~~g  548 (681)
T 2pzi_A          469 LVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDEHKFYQTVWSTNDGVISAAFGLARARSAEG  548 (681)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCTTCHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhCCchHHHHHHHHHHHHHcC
Confidence            445688889999999999999999998743211              011 1   1112344555778999999999999


Q ss_pred             CHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003          463 DYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       463 ~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~  494 (496)
                      ++++|+.++++|++++|++..|++.+|.+++.
T Consensus       549 ~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~  580 (681)
T 2pzi_A          549 DRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS  580 (681)
T ss_dssp             CHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred             CHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence            99999999999999999999999999998764

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.89  E-value=4.5e-06  Score=88.12  Aligned_cols=95  Identities=7%  Similarity=-0.102  Sum_probs=52.5

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCC-----------CCh--H------HHHHHHHHHHHhhhHHHHHHHh
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-----------FGD--E------EKKQAKALKVACNLNNAACKLK  460 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~-----------~~~--~------~~~~~~~~~~~~~~N~a~~~~k  460 (496)
                      ..+...|..+++.|+|++|+..|++|+++.+....           ..+  +      ...++.+....++.|+|.||.+
T Consensus        24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  103 (568)
T 2vsy_A           24 VAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALED  103 (568)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            34556677777777777777777777775322100           000  0      0001112224556666666666


Q ss_pred             ccCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003          461 LKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       461 l~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~  494 (496)
                      ++++.+|+..++++++++|++..+++.+|.++..
T Consensus       104 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  137 (568)
T 2vsy_A          104 AGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR  137 (568)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            6666666666666666666666666666655543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.89  E-value=2.2e-05  Score=67.40  Aligned_cols=75  Identities=9%  Similarity=0.051  Sum_probs=64.4

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .+...|..++..|+|.+|+..|.++++..+.               ...++.|+|.|+.++++|.+|+..+.++++++|+
T Consensus        49 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~  113 (166)
T 1a17_A           49 YYGNRSLAYLRTECYGYALGDATRAIELDKK---------------YIKGYYRRAASNMALGKFRAALRDYETVVKVKPH  113 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            3456788889999999999999999998433               2668999999999999999999999999999999


Q ss_pred             Ccchhccccc
Q 011003          481 KGSGIHSDGR  490 (496)
Q Consensus       481 ~~Ka~~rrg~  490 (496)
                      +..++...+.
T Consensus       114 ~~~~~~~~~~  123 (166)
T 1a17_A          114 DKDAKMKYQE  123 (166)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            9888744443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.89  E-value=2.5e-05  Score=74.98  Aligned_cols=87  Identities=28%  Similarity=0.263  Sum_probs=69.0

Q ss_pred             HhhhHHhhhhhHhc-ccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          399 AGKKKEQGNTLFKA-GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       399 a~~~k~~Gn~~fk~-~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      +..+...|..+... |+|.+|+..|++|+++.+....         ......++.|++.++.++++|.+|+..+++++++
T Consensus       117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~---------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  187 (292)
T 1qqe_A          117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS---------VALSNKCFIKCADLKALDGQYIEASDIYSKLIKS  187 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC---------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            44566778888886 9999999999999998543210         2233678999999999999999999999999999


Q ss_pred             cCCCcc-------hhccccccccc
Q 011003          478 SVQKGS-------GIHSDGRFRFG  494 (496)
Q Consensus       478 dp~~~K-------a~~rrg~a~~~  494 (496)
                      +|++..       +|+++|.+++.
T Consensus       188 ~~~~~~~~~~~~~~~~~lg~~~~~  211 (292)
T 1qqe_A          188 SMGNRLSQWSLKDYFLKKGLCQLA  211 (292)
T ss_dssp             TSSCTTTGGGHHHHHHHHHHHHHH
T ss_pred             HhcCCcccHHHHHHHHHHHHHHHH
Confidence            998754       46777776654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.89  E-value=9.3e-06  Score=65.85  Aligned_cols=64  Identities=8%  Similarity=-0.017  Sum_probs=55.7

Q ss_pred             HHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003          417 RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       417 ~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      .|+..|.++++.-+.+               ..++.|+|.+|+++++|.+|+..++++++++|++..+|+.+|.++..+
T Consensus         3 ~a~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   66 (115)
T 2kat_A            3 AITERLEAMLAQGTDN---------------MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQ   66 (115)
T ss_dssp             CHHHHHHHHHTTTCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHc
Confidence            5788899999874433               678999999999999999999999999999999999999999887643

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.88  E-value=1.3e-05  Score=78.88  Aligned_cols=80  Identities=13%  Similarity=-0.022  Sum_probs=69.6

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .+...|..+++.|+|.+|+..|+++++..+.               ...++.|++.+|.++++|.+|+..++++++++|+
T Consensus       215 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  279 (365)
T 4eqf_A          215 LQTGLGVLFHLSGEFNRAIDAFNAALTVRPE---------------DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG  279 (365)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            4456788888999999999999999987433               2668999999999999999999999999999999


Q ss_pred             Ccchhcccccccccc
Q 011003          481 KGSGIHSDGRFRFGR  495 (496)
Q Consensus       481 ~~Ka~~rrg~a~~~l  495 (496)
                      +..+|+.+|.+|..+
T Consensus       280 ~~~~~~~l~~~~~~~  294 (365)
T 4eqf_A          280 FIRSRYNLGISCINL  294 (365)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHC
Confidence            999999999887643

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.88  E-value=1.7e-05  Score=80.36  Aligned_cols=84  Identities=20%  Similarity=0.147  Sum_probs=72.4

Q ss_pred             HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE  476 (496)
Q Consensus       397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  476 (496)
                      ..+..+...|+.+++.|+|.+|+..|+++++..+.               ...++.++|.|++++++|.+|+..++++++
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   88 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---------------NYIAYYRRATVFLAMGKSKAALPDLTKVIQ   88 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc---------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            45677888999999999999999999999987332               277888999999999999999999999999


Q ss_pred             ccCCCcchhcccccccccc
Q 011003          477 SSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       477 ~dp~~~Ka~~rrg~a~~~l  495 (496)
                      ++|++..+++.+|.+|..+
T Consensus        89 ~~p~~~~~~~~l~~~~~~~  107 (450)
T 2y4t_A           89 LKMDFTAARLQRGHLLLKQ  107 (450)
T ss_dssp             HCTTCHHHHHHHHHHHHHT
T ss_pred             cCCCcHHHHHHHHHHHHHc
Confidence            9999999999888877643

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.88  E-value=1.7e-05  Score=64.86  Aligned_cols=83  Identities=14%  Similarity=0.109  Sum_probs=66.2

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .+...|..++..|+|.+|+..|.++++..+.....        ......++.|+|.++.++++|.+|+..++++++++| 
T Consensus        40 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-  110 (131)
T 1elr_A           40 YITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED--------YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-  110 (131)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhccccchh--------HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-
Confidence            34567888999999999999999999984332110        223377899999999999999999999999999998 


Q ss_pred             Ccchhccccccc
Q 011003          481 KGSGIHSDGRFR  492 (496)
Q Consensus       481 ~~Ka~~rrg~a~  492 (496)
                      +..++...+.++
T Consensus       111 ~~~~~~~l~~~~  122 (131)
T 1elr_A          111 TPDVLKKCQQAE  122 (131)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            677776666544

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.87  E-value=6.1e-06  Score=77.38  Aligned_cols=76  Identities=14%  Similarity=0.117  Sum_probs=54.2

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK  481 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~  481 (496)
                      +...|..++..|+|.+|+..|.++++..+.               ...++.++|.||.++++|.+|+..++++++++|++
T Consensus        77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  141 (272)
T 3u4t_A           77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTT---------------RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD  141 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------------CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCcc---------------cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc
Confidence            455677777777777777777777776322               24567777777777777777777777777777777


Q ss_pred             cchhcccc-ccc
Q 011003          482 GSGIHSDG-RFR  492 (496)
Q Consensus       482 ~Ka~~rrg-~a~  492 (496)
                      ..+|+.+| .++
T Consensus       142 ~~~~~~l~~~~~  153 (272)
T 3u4t_A          142 PKVFYELGQAYY  153 (272)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            77777777 444

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.86  E-value=2.6e-05  Score=70.31  Aligned_cols=79  Identities=16%  Similarity=0.088  Sum_probs=43.0

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+...|..++..|++.+|+..|.++++..+..               ..++.++|.++..++++.+|+..++++++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~   72 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN---------------ELAWLVRAEIYQYLKVNDKAQESFRQALSIK   72 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc---------------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence            3445556667777777777777777777653221               2344445555555555555555555555555


Q ss_pred             CCCcchhccccccc
Q 011003          479 VQKGSGIHSDGRFR  492 (496)
Q Consensus       479 p~~~Ka~~rrg~a~  492 (496)
                      |++..+++.+|.++
T Consensus        73 ~~~~~~~~~l~~~~   86 (225)
T 2vq2_A           73 PDSAEINNNYGWFL   86 (225)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHH
Confidence            55444444444443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.86  E-value=1.5e-05  Score=65.52  Aligned_cols=74  Identities=7%  Similarity=0.008  Sum_probs=62.4

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .+...|..+++.|+|.+|+..|.++++..+..            .....++.++|.|+.+++++.+|+..++++++.+|+
T Consensus        41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  108 (129)
T 2xev_A           41 ALYWLGESYYATRNFQLAEAQFRDLVSRYPTH------------DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPG  108 (129)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            45567888999999999999999999974432            123567899999999999999999999999999999


Q ss_pred             Ccchhc
Q 011003          481 KGSGIH  486 (496)
Q Consensus       481 ~~Ka~~  486 (496)
                      +..+..
T Consensus       109 ~~~~~~  114 (129)
T 2xev_A          109 SDAARV  114 (129)
T ss_dssp             SHHHHH
T ss_pred             ChHHHH
Confidence            876544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.85  E-value=2.8e-05  Score=63.56  Aligned_cols=77  Identities=22%  Similarity=0.259  Sum_probs=61.7

Q ss_pred             HHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCc
Q 011003          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKG  482 (496)
Q Consensus       403 k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~  482 (496)
                      ...|..++..|++.+|+..|.++++..+.               ...++.++|.++.++++|.+|+..++++++.+|++.
T Consensus        39 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  103 (136)
T 2fo7_A           39 YNLGNAYYKQGDYDEAIEYYQKALELDPR---------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA  103 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHCCC---------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence            34566677778888888888888776322               245688999999999999999999999999999999


Q ss_pred             chhccccccccc
Q 011003          483 SGIHSDGRFRFG  494 (496)
Q Consensus       483 Ka~~rrg~a~~~  494 (496)
                      .+++..|.++..
T Consensus       104 ~~~~~la~~~~~  115 (136)
T 2fo7_A          104 EAWYNLGNAYYK  115 (136)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            988888877654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.85  E-value=7.1e-06  Score=80.59  Aligned_cols=80  Identities=11%  Similarity=-0.025  Sum_probs=68.0

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp  479 (496)
                      ..+...|..+++.|+|.+|+..|.++++..+.               ...++.++|.|+.++++|.+|+..++++++++|
T Consensus        65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  129 (368)
T 1fch_A           65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK---------------HMEAWQYLGTTQAENEQELLAISALRRCLELKP  129 (368)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC
Confidence            34557889999999999999999999987332               266788999999999999999999999999999


Q ss_pred             CCcchhccccccccc
Q 011003          480 QKGSGIHSDGRFRFG  494 (496)
Q Consensus       480 ~~~Ka~~rrg~a~~~  494 (496)
                      ++..+++.+|.++..
T Consensus       130 ~~~~~~~~l~~~~~~  144 (368)
T 1fch_A          130 DNQTALMALAVSFTN  144 (368)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999988887754

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.84  E-value=7.4e-06  Score=84.60  Aligned_cols=82  Identities=13%  Similarity=-0.012  Sum_probs=69.3

Q ss_pred             hhHHhhhhhHhc--------ccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHH
Q 011003          401 KKKEQGNTLFKA--------GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT  472 (496)
Q Consensus       401 ~~k~~Gn~~fk~--------~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~  472 (496)
                      .+...|+.++..        |+|.+|+..|++|+++-+.            ......+|.|+|.||.++++|.+|+..++
T Consensus       215 ~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  282 (474)
T 4abn_A          215 SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK------------ASSNPDLHLNRATLHKYEESYGEALEGFS  282 (474)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG------------GGGCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC------------cccCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            344567777777        9999999999999998330            00347889999999999999999999999


Q ss_pred             HHhcccCCCcchhccccccccc
Q 011003          473 KKCESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       473 ~al~~dp~~~Ka~~rrg~a~~~  494 (496)
                      +|++++|++..++++++.++..
T Consensus       283 ~al~l~p~~~~a~~~l~~~~~~  304 (474)
T 4abn_A          283 QAAALDPAWPEPQQREQQLLEF  304 (474)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999887654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.83  E-value=8.9e-06  Score=84.12  Aligned_cols=78  Identities=10%  Similarity=0.037  Sum_probs=69.0

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+...|..+++.|+|++|+..|++|+++-+               ....++.|+|.+|+++++|++|+..+++|++++
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p---------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~  104 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIELDK---------------KYIKGYYRRAASNMALGKFRAALRDYETVVKVK  104 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT---------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            34556788999999999999999999999833               336789999999999999999999999999999


Q ss_pred             CCCcchhcccccc
Q 011003          479 VQKGSGIHSDGRF  491 (496)
Q Consensus       479 p~~~Ka~~rrg~a  491 (496)
                      |++..+++..+.+
T Consensus       105 p~~~~~~~~l~~~  117 (477)
T 1wao_1          105 PHDKDAKMKYQEC  117 (477)
T ss_dssp             TTCTTHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            9999998888766

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.83  E-value=2.9e-06  Score=74.59  Aligned_cols=77  Identities=4%  Similarity=-0.068  Sum_probs=64.2

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp  479 (496)
                      .++...++.++..|+|.+|+..|.++++.-+..               ..++.++|.+|+.+++|.+|+..++++++++|
T Consensus        11 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p   75 (177)
T 2e2e_A           11 QRQRDPLHQFASQQNPEAQLQALQDKIRANPQN---------------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRG   75 (177)
T ss_dssp             CCSSTTTCCCC-----CCCCHHHHHHHHHCCSC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred             HHHhhhhhhhhhccCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            456667888999999999999999999974332               67899999999999999999999999999999


Q ss_pred             CCcchhcccccc
Q 011003          480 QKGSGIHSDGRF  491 (496)
Q Consensus       480 ~~~Ka~~rrg~a  491 (496)
                      ++..+++.+|.+
T Consensus        76 ~~~~~~~~la~~   87 (177)
T 2e2e_A           76 ENAELYAALATV   87 (177)
T ss_dssp             SCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            999999999988

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.82  E-value=8.9e-06  Score=84.02  Aligned_cols=81  Identities=16%  Similarity=-0.004  Sum_probs=71.4

Q ss_pred             HhhhHHhhhhhHhcccH-HHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          399 AGKKKEQGNTLFKAGKY-ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y-~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      +..+...|..++..|+| .+|+..|++|+++-+               ....++.++|.||+++++|.+|+..++++|++
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p---------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~  166 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP---------------ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH  166 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            34566788999999999 999999999999833               33678999999999999999999999999999


Q ss_pred             cCCCcchhcccccccccc
Q 011003          478 SVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       478 dp~~~Ka~~rrg~a~~~l  495 (496)
                      +|+ ..+|+.+|.+|..+
T Consensus       167 ~p~-~~~~~~lg~~~~~~  183 (474)
T 4abn_A          167 CKN-KVSLQNLSMVLRQL  183 (474)
T ss_dssp             CCC-HHHHHHHHHHHTTC
T ss_pred             CCC-HHHHHHHHHHHHHh
Confidence            999 69999999888754

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.82  E-value=9.5e-06  Score=65.78  Aligned_cols=68  Identities=10%  Similarity=-0.015  Sum_probs=59.0

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp  479 (496)
                      ..+...|..++..|+|.+|+..|.++++..+.               ...++.|+|.||.+++++.+|+..+.++++++|
T Consensus        20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~   84 (115)
T 2kat_A           20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPT---------------YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ   84 (115)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            34567888999999999999999999998433               366889999999999999999999999999998


Q ss_pred             CCc
Q 011003          480 QKG  482 (496)
Q Consensus       480 ~~~  482 (496)
                      .+.
T Consensus        85 ~~~   87 (115)
T 2kat_A           85 SRG   87 (115)
T ss_dssp             HHT
T ss_pred             ccc
Confidence            643

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.81  E-value=2.1e-05  Score=77.09  Aligned_cols=79  Identities=11%  Similarity=-0.051  Sum_probs=68.1

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .+...|..+++.|+|.+|+..|+++++..+.               ...++.|+|.++.++++|.+|+..++++++++|+
T Consensus       219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  283 (368)
T 1fch_A          219 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPN---------------DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG  283 (368)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            4456788888999999999999999987332               2568899999999999999999999999999999


Q ss_pred             Ccchhccccccccc
Q 011003          481 KGSGIHSDGRFRFG  494 (496)
Q Consensus       481 ~~Ka~~rrg~a~~~  494 (496)
                      +..+++.+|.++..
T Consensus       284 ~~~~~~~l~~~~~~  297 (368)
T 1fch_A          284 YIRSRYNLGISCIN  297 (368)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH
Confidence            99999999988764

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.81  E-value=3e-05  Score=63.37  Aligned_cols=78  Identities=22%  Similarity=0.241  Sum_probs=67.4

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK  481 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~  481 (496)
                      +...|..++..|++.+|+..|.++++..+.               ...++.++|.++...+++.+|+..++++++++|++
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~   68 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR---------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS   68 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc---------------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc
Confidence            445688889999999999999999987322               25678899999999999999999999999999999


Q ss_pred             cchhccccccccc
Q 011003          482 GSGIHSDGRFRFG  494 (496)
Q Consensus       482 ~Ka~~rrg~a~~~  494 (496)
                      ..+++..|.++..
T Consensus        69 ~~~~~~l~~~~~~   81 (136)
T 2fo7_A           69 AEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHH
Confidence            9999988877654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.81  E-value=2.2e-05  Score=73.57  Aligned_cols=94  Identities=10%  Similarity=0.065  Sum_probs=73.3

Q ss_pred             hhHHhhhhhHh--------cccHHHHHHHHHHHhhhhccCCCCCh--HHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHH
Q 011003          401 KKKEQGNTLFK--------AGKYARASKRYEKAVKYIEYDTSFGD--EEKKQAKALKVACNLNNAACKLKLKDYKQAEKL  470 (496)
Q Consensus       401 ~~k~~Gn~~fk--------~~~y~~A~~~Y~~al~~~~~~~~~~~--~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~  470 (496)
                      .+...|..+++        .|+|.+|+..|+++++..+.......  .....+.......+.++|.||+++|+|.+|+..
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  170 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT  170 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            35567888888        99999999999999998654422111  112333444555679999999999999999999


Q ss_pred             HHHHhcccCCC---cchhccccccccc
Q 011003          471 CTKKCESSVQK---GSGIHSDGRFRFG  494 (496)
Q Consensus       471 ~~~al~~dp~~---~Ka~~rrg~a~~~  494 (496)
                      ++++++.+|++   ..+++++|.+|..
T Consensus       171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~  197 (261)
T 3qky_A          171 YEAVFDAYPDTPWADDALVGAMRAYIA  197 (261)
T ss_dssp             HHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence            99999999984   5799999988864

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.80  E-value=2.1e-05  Score=75.33  Aligned_cols=89  Identities=16%  Similarity=0.088  Sum_probs=69.9

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+...|..++..|+|.+|+..|.+|++++......        ......+++|+|.+|.++++|.+|+..++++|++.
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~--------~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~  226 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS  226 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc--------ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            4566778999999999999999999999875432210        22234789999999999999999999999999886


Q ss_pred             CCC------cchhcccccccccc
Q 011003          479 VQK------GSGIHSDGRFRFGR  495 (496)
Q Consensus       479 p~~------~Ka~~rrg~a~~~l  495 (496)
                      ++.      ..+|+++|.++..+
T Consensus       227 ~~~~~~~~~~~~~~~lg~~y~~~  249 (293)
T 2qfc_A          227 CRINSMALIGQLYYQRGECLRKL  249 (293)
T ss_dssp             HHTTBCSSHHHHHHHHHHHHHHT
T ss_pred             HhcCcHHHHHHHHHHHHHHHHHc
Confidence            431      56778888776543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.79  E-value=3.3e-05  Score=72.23  Aligned_cols=81  Identities=12%  Similarity=0.045  Sum_probs=61.0

Q ss_pred             HHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCc
Q 011003          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKG  482 (496)
Q Consensus       403 k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~  482 (496)
                      ...|..++..|+|.+|+..|.++++ ....           ......++.++|.|+.++++|.+|+..++++++++|++.
T Consensus        41 ~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~-----------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~  108 (272)
T 3u4t_A           41 NRRAVCYYELAKYDLAQKDIETYFS-KVNA-----------TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL  108 (272)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHT-TSCT-----------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHh-ccCc-----------hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH
Confidence            3455556666666666666666666 2211           112355689999999999999999999999999999999


Q ss_pred             chhcccccccccc
Q 011003          483 SGIHSDGRFRFGR  495 (496)
Q Consensus       483 Ka~~rrg~a~~~l  495 (496)
                      .+|+.+|.++..+
T Consensus       109 ~~~~~l~~~~~~~  121 (272)
T 3u4t_A          109 DMYGQIGSYFYNK  121 (272)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHc
Confidence            9999999887653

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.79  E-value=6.4e-05  Score=59.43  Aligned_cols=69  Identities=14%  Similarity=0.090  Sum_probs=59.1

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhc-cCHHHHHHHHHHHhcccC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-KDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl-~~~~~Ai~~~~~al~~dp  479 (496)
                      .+...|..++..|+|.+|+..|.++++..+.             .....++.|+|.|+.++ +++.+|++.+++++..+|
T Consensus        42 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           42 YWLMKGKALYNLERYEEAVDCYNYVINVIED-------------EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-------------TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-------------cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence            3456788899999999999999999998443             00266889999999999 999999999999999999


Q ss_pred             CCc
Q 011003          480 QKG  482 (496)
Q Consensus       480 ~~~  482 (496)
                      ++.
T Consensus       109 ~~~  111 (112)
T 2kck_A          109 HHH  111 (112)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            864

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.79  E-value=3.3e-05  Score=67.10  Aligned_cols=47  Identities=6%  Similarity=-0.122  Sum_probs=35.1

Q ss_pred             HHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003          448 VACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       448 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~  494 (496)
                      ..++.++|.++.+++++.+|+..++++++.+|++..+++..|.++..
T Consensus       110 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (186)
T 3as5_A          110 FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ  156 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            45667777777778888888888888777777777777777766643

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.79  E-value=5.1e-05  Score=64.75  Aligned_cols=70  Identities=14%  Similarity=0.079  Sum_probs=53.2

Q ss_pred             hhhhhHhcc---cHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003          405 QGNTLFKAG---KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK  481 (496)
Q Consensus       405 ~Gn~~fk~~---~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~  481 (496)
                      -|..+.+..   ++++|+..++..++.-  .           ......++.|+|.+|+|+++|.+|+++|+++|+++|+|
T Consensus        38 ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~-----------p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n  104 (152)
T 1pc2_A           38 YAWCLVRSKYNDDIRKGIVLLEELLPKG--S-----------KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN  104 (152)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHS--C-----------HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhcC--C-----------ccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence            344455544   6667777777776641  0           11457789999999999999999999999999999999


Q ss_pred             cchhcc
Q 011003          482 GSGIHS  487 (496)
Q Consensus       482 ~Ka~~r  487 (496)
                      ..|..-
T Consensus       105 ~QA~~L  110 (152)
T 1pc2_A          105 NQAKEL  110 (152)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.77  E-value=3.7e-05  Score=66.83  Aligned_cols=34  Identities=12%  Similarity=-0.086  Sum_probs=17.0

Q ss_pred             HhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCc
Q 011003          449 ACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKG  482 (496)
Q Consensus       449 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~  482 (496)
                      .++.++|.++.+++++.+|+..++++++++|++.
T Consensus       145 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  178 (186)
T 3as5_A          145 KVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS  178 (186)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence            3444555555555555555555555555554443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.76  E-value=2.7e-05  Score=77.41  Aligned_cols=48  Identities=13%  Similarity=-0.055  Sum_probs=42.5

Q ss_pred             HHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003          448 VACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       448 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      ..++.|++.++.++|++.+|+..++++++++|++..+|+.+|.++..+
T Consensus       339 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~  386 (388)
T 1w3b_A          339 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM  386 (388)
T ss_dssp             HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHc
Confidence            567889999999999999999999999999999999999999877643

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.73  E-value=1.8e-05  Score=65.89  Aligned_cols=67  Identities=12%  Similarity=0.140  Sum_probs=59.1

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp  479 (496)
                      ..+...|..++..|+|.+|+..|.+++++.+.               ...++.|+|.|+.++++|.+|+..+.++++++|
T Consensus        44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p  108 (137)
T 3q49_B           44 VYYTNRALCYLKMQQPEQALADCRRALELDGQ---------------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK  108 (137)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch---------------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence            34566788999999999999999999998433               367899999999999999999999999999999


Q ss_pred             CC
Q 011003          480 QK  481 (496)
Q Consensus       480 ~~  481 (496)
                      ++
T Consensus       109 ~~  110 (137)
T 3q49_B          109 EQ  110 (137)
T ss_dssp             HT
T ss_pred             hH
Confidence            83

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.73  E-value=2.3e-05  Score=75.29  Aligned_cols=77  Identities=13%  Similarity=0.039  Sum_probs=69.0

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .+...|..+++.|+|.+|+..|+++++..+.               ...++.++|.|+.+++++.+|+..++++++++|+
T Consensus       238 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  302 (330)
T 3hym_B          238 LLNNLGHVCRKLKKYAEALDYHRQALVLIPQ---------------NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD  302 (330)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------------CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc---------------chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence            3456788889999999999999999998433               3678999999999999999999999999999999


Q ss_pred             Ccchhccccccc
Q 011003          481 KGSGIHSDGRFR  492 (496)
Q Consensus       481 ~~Ka~~rrg~a~  492 (496)
                      +..+++.+|.++
T Consensus       303 ~~~~~~~l~~~~  314 (330)
T 3hym_B          303 DTFSVTMLGHCI  314 (330)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             chHHHHHHHHHH
Confidence            999999999877

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.72  E-value=4.4e-05  Score=69.93  Aligned_cols=46  Identities=9%  Similarity=0.010  Sum_probs=27.1

Q ss_pred             HHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccc
Q 011003          448 VACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRF  493 (496)
Q Consensus       448 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~  493 (496)
                      ..++.++|.++++++++.+|+..++++++.+|++..+++.+|.++.
T Consensus       159 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  204 (243)
T 2q7f_A          159 TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYA  204 (243)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            3445556666666666666666666666666666666665555544

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.72  E-value=4.7e-05  Score=69.71  Aligned_cols=47  Identities=13%  Similarity=-0.072  Sum_probs=36.0

Q ss_pred             HHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003          448 VACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       448 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~  494 (496)
                      ..++.++|.+++++++|.+|+..++++++++|++..+++.+|.++..
T Consensus       125 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  171 (243)
T 2q7f_A          125 GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN  171 (243)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            45677788888888888888888888888888888887777776653

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.71  E-value=3.7e-05  Score=73.68  Aligned_cols=89  Identities=12%  Similarity=0.002  Sum_probs=67.9

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhc-cCHHHHHHHHHHHhc
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-KDYKQAEKLCTKKCE  476 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl-~~~~~Ai~~~~~al~  476 (496)
                      .+..+...|+.+.+.|+|.+|+..|.+|+++......         ......++.|+|.+|.++ +++.+|+.++++||+
T Consensus        76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~---------~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~  146 (292)
T 1qqe_A           76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ---------FRRGANFKFELGEILENDLHDYAKAIDCYELAGE  146 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            3556667788888888888888888888887532210         223367899999999995 999999999999999


Q ss_pred             ccCCC------cchhcccccccccc
Q 011003          477 SSVQK------GSGIHSDGRFRFGR  495 (496)
Q Consensus       477 ~dp~~------~Ka~~rrg~a~~~l  495 (496)
                      +.|.+      ..+|.+.|.++..+
T Consensus       147 ~~~~~~~~~~~~~~~~~lg~~~~~~  171 (292)
T 1qqe_A          147 WYAQDQSVALSNKCFIKCADLKALD  171 (292)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhCCChHHHHHHHHHHHHHHHHh
Confidence            98865      45677777766543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.70  E-value=2.1e-05  Score=83.04  Aligned_cols=88  Identities=9%  Similarity=-0.013  Sum_probs=61.6

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCC-----------CCh--HH------HHHHHHHHHHhhhHHHHHHHhc-
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-----------FGD--EE------KKQAKALKVACNLNNAACKLKL-  461 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~-----------~~~--~~------~~~~~~~~~~~~~N~a~~~~kl-  461 (496)
                      +...|..+++.|+|++|+..|++|++..+.+..           ..+  +-      ..++.+....++.|++.++.++ 
T Consensus        60 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  139 (568)
T 2vsy_A           60 VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC  139 (568)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Confidence            445666677777777777777777775332100           000  00      0112233467899999999999 


Q ss_pred             --cCHHHHHHHHHHHhcccCCCcchhcccc
Q 011003          462 --KDYKQAEKLCTKKCESSVQKGSGIHSDG  489 (496)
Q Consensus       462 --~~~~~Ai~~~~~al~~dp~~~Ka~~rrg  489 (496)
                        +++.+|+..++++|+.+|++..+|+..+
T Consensus       140 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A          140 DWRALDVLSAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             CCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred             ccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence              9999999999999999999999887655

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=97.70  E-value=4.7e-05  Score=75.71  Aligned_cols=90  Identities=12%  Similarity=0.094  Sum_probs=73.6

Q ss_pred             HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE  476 (496)
Q Consensus       397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  476 (496)
                      ..+..+...|..++..|+|.+|+..|.+|+++.+...         -......++.|+|.||.++++|.+|+..+++|++
T Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  252 (383)
T 3ulq_A          182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK---------QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA  252 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3445566778899999999999999999999865321         1445577899999999999999999999999999


Q ss_pred             -----cc-CCCcchhcccccccccc
Q 011003          477 -----SS-VQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       477 -----~d-p~~~Ka~~rrg~a~~~l  495 (496)
                           .+ |....+++..|.++..+
T Consensus       253 ~~~~~~~~~~~~~~~~~l~~~~~~~  277 (383)
T 3ulq_A          253 VFEESNILPSLPQAYFLITQIHYKL  277 (383)
T ss_dssp             HHHHTTCGGGHHHHHHHHHHHHHHT
T ss_pred             HHHhhccchhHHHHHHHHHHHHHHC
Confidence                 46 77788899888887654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.69  E-value=3.9e-05  Score=64.90  Aligned_cols=74  Identities=16%  Similarity=0.096  Sum_probs=42.6

Q ss_pred             HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE  476 (496)
Q Consensus       397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  476 (496)
                      ..+..+...|..++..|+|.+|+..|.+++++.+....         ......++.|+|.++..+++|.+|+..++++++
T Consensus         7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~   77 (164)
T 3ro3_A            7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERIAYSNLGNAYIFLGEFETASEYYKKTLL   77 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC---------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34455566677777777777777777777766432100         222344555666666666666666666666555


Q ss_pred             ccC
Q 011003          477 SSV  479 (496)
Q Consensus       477 ~dp  479 (496)
                      +.+
T Consensus        78 ~~~   80 (164)
T 3ro3_A           78 LAR   80 (164)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.68  E-value=5.1e-05  Score=75.41  Aligned_cols=90  Identities=11%  Similarity=-0.087  Sum_probs=74.1

Q ss_pred             HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE  476 (496)
Q Consensus       397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  476 (496)
                      ..+..+...|..++..|+|.+|+..|.+|+++.....         -......++.|+|.||..+++|.+|+..+++|++
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~---------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ---------NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3455666788999999999999999999999864321         0335677899999999999999999999999999


Q ss_pred             -----ccCCCcchhcccccccccc
Q 011003          477 -----SSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       477 -----~dp~~~Ka~~rrg~a~~~l  495 (496)
                           .+|....+++..|.++..+
T Consensus       251 ~~~~~~~~~~~~~~~~la~~~~~~  274 (378)
T 3q15_A          251 VSREKVPDLLPKVLFGLSWTLCKA  274 (378)
T ss_dssp             HHHHHCGGGHHHHHHHHHHHHHHT
T ss_pred             HHHhhCChhHHHHHHHHHHHHHHC
Confidence                 7888888999888887643

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.67  E-value=4.2e-05  Score=73.47  Aligned_cols=88  Identities=19%  Similarity=0.057  Sum_probs=67.8

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .+...|..+++.|+|.+|+..|.++++..+.......      .+....++.|+|.++.+++++.+|+..++++++++|+
T Consensus       195 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  268 (330)
T 3hym_B          195 VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT------VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ  268 (330)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT------TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            3445677777888888888888888877532211000      0122568899999999999999999999999999999


Q ss_pred             Ccchhccccccccc
Q 011003          481 KGSGIHSDGRFRFG  494 (496)
Q Consensus       481 ~~Ka~~rrg~a~~~  494 (496)
                      +..+|+.+|.++..
T Consensus       269 ~~~~~~~la~~~~~  282 (330)
T 3hym_B          269 NASTYSAIGYIHSL  282 (330)
T ss_dssp             CSHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHH
Confidence            99999999988764

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.67  E-value=1.8e-05  Score=73.32  Aligned_cols=95  Identities=11%  Similarity=0.034  Sum_probs=50.3

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCC-----------CCh--HHH------HHHHHHHHHhhhHHHHHHH
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-----------FGD--EEK------KQAKALKVACNLNNAACKL  459 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~-----------~~~--~~~------~~~~~~~~~~~~N~a~~~~  459 (496)
                      +..+...|..++..|+|.+|+..|.++++..+....           ..+  +-.      .+..+....++.++|.+++
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  116 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY  116 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence            455666777777777777777777777765321100           000  000      0001112345555666666


Q ss_pred             hccCHHHHHHHHHHHhc--ccCCCcchhcccccccc
Q 011003          460 KLKDYKQAEKLCTKKCE--SSVQKGSGIHSDGRFRF  493 (496)
Q Consensus       460 kl~~~~~Ai~~~~~al~--~dp~~~Ka~~rrg~a~~  493 (496)
                      ++++|.+|+..++++++  .+|.+..+++.+|.+++
T Consensus       117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~  152 (252)
T 2ho1_A          117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL  152 (252)
T ss_dssp             HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHH
Confidence            66666666666666665  55555555555555543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.67  E-value=4.2e-05  Score=73.37  Aligned_cols=81  Identities=9%  Similarity=-0.072  Sum_probs=61.4

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+...|..++..|+|.+|+..|+++++..+.               ...++.++|.++.++++|.+|+..++++++++
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~   85 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPE---------------REEAWRSLGLTQAENEKDGLAIIALNHARMLD   85 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            345567788888888899999988888886332               25567778888888888888888888888888


Q ss_pred             CCCcchhccccccccc
Q 011003          479 VQKGSGIHSDGRFRFG  494 (496)
Q Consensus       479 p~~~Ka~~rrg~a~~~  494 (496)
                      |++..+++.+|.++..
T Consensus        86 ~~~~~~~~~la~~~~~  101 (327)
T 3cv0_A           86 PKDIAVHAALAVSHTN  101 (327)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            8888777777766643

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.65  E-value=2.5e-05  Score=77.61  Aligned_cols=94  Identities=13%  Similarity=0.025  Sum_probs=56.5

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCC--------------CCChH-----HHHHHHHHHHHhhhHHHHHHHh
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT--------------SFGDE-----EKKQAKALKVACNLNNAACKLK  460 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~--------------~~~~~-----~~~~~~~~~~~~~~N~a~~~~k  460 (496)
                      ..+...|+.+++.|+|.+|+..|+++++.-+...              ...+.     ...+..+....++.+++.++.+
T Consensus        68 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  147 (388)
T 1w3b_A           68 EAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKA  147 (388)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            3466788889999999999999999998633220              00000     0001112223445566666666


Q ss_pred             ccCHHHHHHHHHHHhcccCCCcchhcccccccc
Q 011003          461 LKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRF  493 (496)
Q Consensus       461 l~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~  493 (496)
                      ++++.+|+..+.++++++|++..+|+.+|.++.
T Consensus       148 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  180 (388)
T 1w3b_A          148 LGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN  180 (388)
T ss_dssp             TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            666666666666666666666666666665554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.65  E-value=1.6e-05  Score=63.08  Aligned_cols=50  Identities=14%  Similarity=-0.047  Sum_probs=45.9

Q ss_pred             HHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003          446 LKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       446 ~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      ....++.|+|.+|+++++|.+|+..++++++++|++..+|+.+|.+|..+
T Consensus         5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~   54 (100)
T 3ma5_A            5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERL   54 (100)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence            34678999999999999999999999999999999999999999988654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.64  E-value=5.1e-05  Score=70.85  Aligned_cols=91  Identities=19%  Similarity=0.086  Sum_probs=73.9

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      .+..+...|..++..|+|.+|+..|.+++++.......+       .+....++.|+|.+|..+++|.+|+..+.+++++
T Consensus        42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  114 (283)
T 3edt_B           42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI  114 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc-------chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            455667789999999999999999999999853210000       3556789999999999999999999999999998


Q ss_pred             --------cCCCcchhcccccccccc
Q 011003          478 --------SVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       478 --------dp~~~Ka~~rrg~a~~~l  495 (496)
                              +|....+++..|.++..+
T Consensus       115 ~~~~~~~~~~~~~~~~~~la~~~~~~  140 (283)
T 3edt_B          115 REKVLGKFHPDVAKQLNNLALLCQNQ  140 (283)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCCChHHHHHHHHHHHHHHHc
Confidence                    577788888888877654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.63  E-value=4.5e-05  Score=70.53  Aligned_cols=79  Identities=16%  Similarity=0.132  Sum_probs=45.3

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK  481 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~  481 (496)
                      +...|..++..|+|.+|+..|.++++ ...            .+....++.++|.++++++++.+|+..++++++++|++
T Consensus       108 ~~~la~~~~~~g~~~~A~~~~~~~~~-~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  174 (252)
T 2ho1_A          108 LNNYGGFLYEQKRYEEAYQRLLEASQ-DTL------------YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ  174 (252)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTT-CTT------------CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHh-Ccc------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc
Confidence            34456677777888888888888776 100            11123445555555555555555555555555555555


Q ss_pred             cchhcccccccc
Q 011003          482 GSGIHSDGRFRF  493 (496)
Q Consensus       482 ~Ka~~rrg~a~~  493 (496)
                      ..+++.+|.++.
T Consensus       175 ~~~~~~la~~~~  186 (252)
T 2ho1_A          175 PSVALEMADLLY  186 (252)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            555555554443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.63  E-value=3.6e-05  Score=71.94  Aligned_cols=80  Identities=8%  Similarity=-0.124  Sum_probs=67.8

Q ss_pred             hhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcch
Q 011003          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSG  484 (496)
Q Consensus       405 ~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka  484 (496)
                      .+..+...++|++|+..|.++++.....           .+....++.++|.++..+++|.+|+..++++++++|++..+
T Consensus        11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~   79 (275)
T 1xnf_A           11 LAVPLQPTLQQEVILARMEQILASRALT-----------DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV   79 (275)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHHTSSCCC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH
T ss_pred             eeeccCccchHHHHHHHHHHHHhccccc-----------CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHH
Confidence            3445566799999999999999863322           45568889999999999999999999999999999999999


Q ss_pred             hcccccccccc
Q 011003          485 IHSDGRFRFGR  495 (496)
Q Consensus       485 ~~rrg~a~~~l  495 (496)
                      |+.+|.++..+
T Consensus        80 ~~~la~~~~~~   90 (275)
T 1xnf_A           80 FNYLGIYLTQA   90 (275)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            99999887643

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.63  E-value=3.8e-05  Score=69.21  Aligned_cols=79  Identities=18%  Similarity=0.179  Sum_probs=51.2

Q ss_pred             hHHhhhhhHhc-ccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          402 KKEQGNTLFKA-GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       402 ~k~~Gn~~fk~-~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      +...|..++.. |++.+|+..|.++++ ...            .+....++.++|.++.+++++.+|+..++++++.+|+
T Consensus        79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  145 (225)
T 2vq2_A           79 NNNYGWFLCGRLNRPAESMAYFDKALA-DPT------------YPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ  145 (225)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHHT-STT------------CSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHc-CcC------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            34456666777 777777777777776 111            1112455667777777777777777777777777777


Q ss_pred             Ccchhcccccccc
Q 011003          481 KGSGIHSDGRFRF  493 (496)
Q Consensus       481 ~~Ka~~rrg~a~~  493 (496)
                      +..+++..|.++.
T Consensus       146 ~~~~~~~la~~~~  158 (225)
T 2vq2_A          146 FPPAFKELARTKM  158 (225)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHH
Confidence            7777666666554

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.60  E-value=6.7e-05  Score=72.46  Aligned_cols=85  Identities=9%  Similarity=0.024  Sum_probs=55.6

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+...|..+.. |+|.+|+..|++|+++.+....         ......++.|+|.+|.++++|.+|+..+++++++.
T Consensus       116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~---------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  185 (307)
T 2ifu_A          116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER---------LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY  185 (307)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC---------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            3445556666666 8888888888888877543210         12335677788888888888888888888888776


Q ss_pred             CCCc------chhcccccccc
Q 011003          479 VQKG------SGIHSDGRFRF  493 (496)
Q Consensus       479 p~~~------Ka~~rrg~a~~  493 (496)
                      |.+.      .+++.+|.+++
T Consensus       186 ~~~~~~~~~~~~~~~~g~~~~  206 (307)
T 2ifu_A          186 KEMENYPTCYKKCIAQVLVQL  206 (307)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHcCChhHHHHHHHHHHHHHH
Confidence            6543      25555555544

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.59  E-value=2.7e-05  Score=68.49  Aligned_cols=69  Identities=19%  Similarity=0.152  Sum_probs=56.0

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp  479 (496)
                      ..+...|..++..|+|.+|+..|+++++.               ++....++.++|.+++++|++.+|+..++++++++|
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~---------------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p   71 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSDE---------------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ   71 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCHH---------------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC
Confidence            34567888899999999999999999987               555577888888888888888888888888777777


Q ss_pred             CCcch
Q 011003          480 QKGSG  484 (496)
Q Consensus       480 ~~~Ka  484 (496)
                       +...
T Consensus        72 -~~~~   75 (176)
T 2r5s_A           72 -DNSY   75 (176)
T ss_dssp             -CHHH
T ss_pred             -ChHH
Confidence             5543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.58  E-value=9e-05  Score=70.97  Aligned_cols=80  Identities=10%  Similarity=-0.080  Sum_probs=68.6

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .+...|..+++.|++.+|+..|.++++..+..               ..++.++|.++.+++++.+|+..++++++++|+
T Consensus       174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  238 (327)
T 3cv0_A          174 LHASLGVLYNLSNNYDSAAANLRRAVELRPDD---------------AQLWNKLGATLANGNRPQEALDAYNRALDINPG  238 (327)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            44567888889999999999999999874332               567899999999999999999999999999999


Q ss_pred             Ccchhcccccccccc
Q 011003          481 KGSGIHSDGRFRFGR  495 (496)
Q Consensus       481 ~~Ka~~rrg~a~~~l  495 (496)
                      +..+++.+|.++..+
T Consensus       239 ~~~~~~~l~~~~~~~  253 (327)
T 3cv0_A          239 YVRVMYNMAVSYSNM  253 (327)
T ss_dssp             CHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999988877643

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.58  E-value=5.6e-05  Score=75.45  Aligned_cols=86  Identities=14%  Similarity=0.067  Sum_probs=53.3

Q ss_pred             HHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHh
Q 011003          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKC  475 (496)
Q Consensus       396 ~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  475 (496)
                      ...+..+...|..++..|+|.+|+..|+++++..+.+           ......++.++|.+|+.+++|.+|+..+++++
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  113 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTED-----------LRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL  113 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC-----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccC-----------hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4556777789999999999999999999999874332           22223445555555555555555555555555


Q ss_pred             cc------cCCCcchhccccccc
Q 011003          476 ES------SVQKGSGIHSDGRFR  492 (496)
Q Consensus       476 ~~------dp~~~Ka~~rrg~a~  492 (496)
                      ++      +|....+|+.+|.++
T Consensus       114 ~~~~~~~~~~~~~~~~~~l~~~~  136 (411)
T 4a1s_A          114 TLAKSMNDRLGEAKSSGNLGNTL  136 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCchHHHHHHHHHHHHH
Confidence            44      344444444444443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.58  E-value=5.6e-05  Score=70.59  Aligned_cols=91  Identities=13%  Similarity=-0.052  Sum_probs=73.7

Q ss_pred             HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE  476 (496)
Q Consensus       397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  476 (496)
                      ..+..+...|..++..|+|.+|+..|.+|+++........       .+....++.|+|.+|..+++|.+|+..++++++
T Consensus        83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  155 (283)
T 3edt_B           83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF-------HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE  155 (283)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455667789999999999999999999999853211100       245678899999999999999999999999999


Q ss_pred             c--------cCCCcchhccccccccc
Q 011003          477 S--------SVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       477 ~--------dp~~~Ka~~rrg~a~~~  494 (496)
                      +        +|.+..+++..|.++..
T Consensus       156 ~~~~~~~~~~~~~~~~~~~la~~~~~  181 (283)
T 3edt_B          156 IYATRLGPDDPNVAKTKNNLASCYLK  181 (283)
T ss_dssp             HHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            8        77778888888887754

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.56  E-value=7.2e-05  Score=68.60  Aligned_cols=88  Identities=7%  Similarity=-0.129  Sum_probs=65.8

Q ss_pred             hhHhcccHHHHHHHHHHHhhhhccCCCCCh--HHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCc---
Q 011003          408 TLFKAGKYARASKRYEKAVKYIEYDTSFGD--EEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKG---  482 (496)
Q Consensus       408 ~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~--~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~---  482 (496)
                      .....|++.+|+..|+++++..+.+.....  .....+.........++|.+|++.++|.+|+..++++++..|++.   
T Consensus       105 ~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  184 (225)
T 2yhc_A          105 SDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATR  184 (225)
T ss_dssp             ---CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred             hhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccH
Confidence            334578999999999999998665432211  111223333445567899999999999999999999999999986   


Q ss_pred             chhcccccccccc
Q 011003          483 SGIHSDGRFRFGR  495 (496)
Q Consensus       483 Ka~~rrg~a~~~l  495 (496)
                      +|++++|.++..+
T Consensus       185 ~a~~~l~~~~~~~  197 (225)
T 2yhc_A          185 DALPLMENAYRQM  197 (225)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHc
Confidence            7899999988765

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.50  E-value=0.00014  Score=61.40  Aligned_cols=86  Identities=19%  Similarity=0.169  Sum_probs=65.5

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+...|..++..|+|.+|+..|.+++++.+....         ......++.|+|.++..+++|.+|+..+++++++.
T Consensus        49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  119 (164)
T 3ro3_A           49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA  119 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            345667889999999999999999999998654211         33457788999999999999999999999998874


Q ss_pred             CCC------cchhcccccccc
Q 011003          479 VQK------GSGIHSDGRFRF  493 (496)
Q Consensus       479 p~~------~Ka~~rrg~a~~  493 (496)
                      +..      ..+++..|.++.
T Consensus       120 ~~~~~~~~~~~~~~~la~~~~  140 (164)
T 3ro3_A          120 QELKDRIGEGRACWSLGNAYT  140 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHccchHhHHHHHHHHHHHHH
Confidence            322      345666665554

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.47  E-value=0.0001  Score=70.38  Aligned_cols=93  Identities=16%  Similarity=0.140  Sum_probs=50.1

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCC---------------CCh-HHH-------------HHHHHHHHHh
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS---------------FGD-EEK-------------KQAKALKVAC  450 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~---------------~~~-~~~-------------~~~~~~~~~~  450 (496)
                      ..+...|..++..|+|.+|+..|+++++..+.+..               ..+ ++-             ....+....+
T Consensus         6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   85 (338)
T 3ro2_A            6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   85 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            34556677777777777777777777775322100               000 000             0002333555


Q ss_pred             hhHHHHHHHhccCHHHHHHHHHHHhcccCCCcc------hhccccccc
Q 011003          451 NLNNAACKLKLKDYKQAEKLCTKKCESSVQKGS------GIHSDGRFR  492 (496)
Q Consensus       451 ~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~K------a~~rrg~a~  492 (496)
                      +.++|.+|..+++|.+|+..+.+++++.+....      +++..|.++
T Consensus        86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~  133 (338)
T 3ro2_A           86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVY  133 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence            666666666666666666666666666554322      555555444

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.46  E-value=5.6e-05  Score=72.35  Aligned_cols=80  Identities=13%  Similarity=0.046  Sum_probs=57.8

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHH---------
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL---------  470 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~---------  470 (496)
                      ..+...|..++..|++.+|+..|+++++.-+.+               ..++.++|.+++.+|++.+|+..         
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p  182 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN---------------GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ  182 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC---------------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc---------------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc
Confidence            456788999999999999999999999984332               55666666666666666666554         


Q ss_pred             -------------------------HHHHhcccCCCcchhccccccccc
Q 011003          471 -------------------------CTKKCESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       471 -------------------------~~~al~~dp~~~Ka~~rrg~a~~~  494 (496)
                                               +.++++++|++..+++.+|.+|..
T Consensus       183 ~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~  231 (287)
T 3qou_A          183 DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQ  231 (287)
T ss_dssp             SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence                                     445566677777777777766543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=97.42  E-value=0.0002  Score=71.09  Aligned_cols=90  Identities=12%  Similarity=0.031  Sum_probs=67.5

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      .+..+...|..++..|+|..|+..|.+|++++.....        .......+++|+|.||..+++|.+|+..+++|+++
T Consensus       142 ~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  213 (383)
T 3ulq_A          142 KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA--------YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM  213 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST--------THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc--------chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            4455566777777778888888888888877544311        13445789999999999999999999999999998


Q ss_pred             cCCCc------chhcccccccccc
Q 011003          478 SVQKG------SGIHSDGRFRFGR  495 (496)
Q Consensus       478 dp~~~------Ka~~rrg~a~~~l  495 (496)
                      .+...      .+++..|.+|..+
T Consensus       214 ~~~~~~~~~~~~~~~~lg~~y~~~  237 (383)
T 3ulq_A          214 AEAEKQPQLMGRTLYNIGLCKNSQ  237 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHcCChHHHHHHHHHHHHHHHHC
Confidence            66543      4788888776543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.41  E-value=6.2e-05  Score=71.84  Aligned_cols=70  Identities=11%  Similarity=0.122  Sum_probs=60.8

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp  479 (496)
                      ..+...|..+++.|+|.+|+..|.+|+++-+               ....+++|+|.+|.++++|.+|+..+.++++++|
T Consensus        39 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  103 (281)
T 2c2l_A           39 VYYTNRALCYLKMQQPEQALADCRRALELDG---------------QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK  103 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            3455688899999999999999999999833               3367899999999999999999999999999999


Q ss_pred             CCcch
Q 011003          480 QKGSG  484 (496)
Q Consensus       480 ~~~Ka  484 (496)
                      ++...
T Consensus       104 ~~~~~  108 (281)
T 2c2l_A          104 EQRLN  108 (281)
T ss_dssp             HTTCC
T ss_pred             cchhh
Confidence            87543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.41  E-value=0.00016  Score=74.70  Aligned_cols=95  Identities=13%  Similarity=0.089  Sum_probs=74.6

Q ss_pred             HHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHH
Q 011003          393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT  472 (496)
Q Consensus       393 ~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~  472 (496)
                      .+.++.+....+++..+..+|+|++|+..|.++|+........+       .+..+..++|+|.+|..+|+|.+|+..+.
T Consensus       303 ~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~  375 (490)
T 3n71_A          303 KEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADT-------NLYVLRLLSIASEVLSYLQAYEEASHYAR  375 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            35566777788888889999999999999999999865432222       45678899999999999999999999999


Q ss_pred             HHhccc-----CCC---cchhccccccccc
Q 011003          473 KKCESS-----VQK---GSGIHSDGRFRFG  494 (496)
Q Consensus       473 ~al~~d-----p~~---~Ka~~rrg~a~~~  494 (496)
                      ++|++.     |++   ..+|++.|.+|..
T Consensus       376 ~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~  405 (490)
T 3n71_A          376 RMVDGYMKLYHHNNAQLGMAVMRAGLTNWH  405 (490)
T ss_dssp             HHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            999763     444   4566666666654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.39  E-value=0.00024  Score=74.70  Aligned_cols=80  Identities=14%  Similarity=-0.073  Sum_probs=70.1

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp  479 (496)
                      ..+...|..+++.|++++|+..|+++++.-+.+               ..+|.+++.+|.++|+|++|+..++++++++|
T Consensus       517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p  581 (597)
T 2xpi_A          517 ATWANLGHAYRKLKMYDAAIDALNQGLLLSTND---------------ANVHTAIALVYLHKKIPGLAITHLHESLAISP  581 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence            345567888899999999999999999974332               67899999999999999999999999999999


Q ss_pred             CCcchhccccccccc
Q 011003          480 QKGSGIHSDGRFRFG  494 (496)
Q Consensus       480 ~~~Ka~~rrg~a~~~  494 (496)
                      ++..+++.++.+|..
T Consensus       582 ~~~~~~~~l~~~~~~  596 (597)
T 2xpi_A          582 NEIMASDLLKRALEE  596 (597)
T ss_dssp             TCHHHHHHHHHTTC-
T ss_pred             CChHHHHHHHHHHhc
Confidence            999999999988753

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.39  E-value=0.00016  Score=64.12  Aligned_cols=87  Identities=7%  Similarity=0.039  Sum_probs=68.8

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      .+..+...|..++..|+|.+|+..|.+++.++.....         ......++.|+|.+|..+++|.+|+..+.+++++
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   95 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---------HTAEHRALHQVGMVERMAGNWDAARRCFLEEREL   95 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3556677899999999999999999999998653211         4556788999999999999999999999999998


Q ss_pred             ---cCC----Ccchhcccccccc
Q 011003          478 ---SVQ----KGSGIHSDGRFRF  493 (496)
Q Consensus       478 ---dp~----~~Ka~~rrg~a~~  493 (496)
                         .++    ...+++..|.++.
T Consensus        96 ~~~~~~~~~~~~~~~~~lg~~~~  118 (203)
T 3gw4_A           96 LASLPEDPLAASANAYEVATVAL  118 (203)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHcCccHHHHHHHHHHHHHHHH
Confidence               332    2445666666554

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.38  E-value=0.00013  Score=72.22  Aligned_cols=29  Identities=24%  Similarity=0.281  Sum_probs=20.4

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhh
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKY  428 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~  428 (496)
                      ..+...|..+++.|+|.+|+..|+++++.
T Consensus        10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~   38 (406)
T 3sf4_A           10 LELALEGERLCKSGDCRAGVSFFEAAVQV   38 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence            34456677777777777777777777776

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.36  E-value=0.00011  Score=70.82  Aligned_cols=87  Identities=14%  Similarity=0.022  Sum_probs=64.7

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+...|+.+.+.|+|.+|+..|.+|+++......         ......++.|+|.+|.+ ++|.+|+..+++||++.
T Consensus        76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~---------~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~  145 (307)
T 2ifu_A           76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT---------PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVF  145 (307)
T ss_dssp             HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC---------HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH
Confidence            445556677777788888888888888887532210         22346789999999999 99999999999999988


Q ss_pred             CCC------cchhcccccccccc
Q 011003          479 VQK------GSGIHSDGRFRFGR  495 (496)
Q Consensus       479 p~~------~Ka~~rrg~a~~~l  495 (496)
                      +..      ..+|++.|.+|..+
T Consensus       146 ~~~~~~~~~~~~~~~lg~~~~~~  168 (307)
T 2ifu_A          146 ENEERLRQAAELIGKASRLLVRQ  168 (307)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HhCCChhHHHHHHHHHHHHHHHc
Confidence            754      46777777766543

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=97.33  E-value=0.00027  Score=71.61  Aligned_cols=74  Identities=16%  Similarity=0.238  Sum_probs=62.2

Q ss_pred             CCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCCccCCcccccccc
Q 011003          285 RPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELA  364 (496)
Q Consensus       285 ~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~  364 (496)
                      ....||.|+|+|.++ .||..|+++    ...++.+.+|.+.  + |+.+|.||++||...|.+..              
T Consensus       154 ~a~~gD~V~id~~~~-~dG~~~~~~----~~~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~vtF--------------  211 (433)
T 3gty_X          154 PAEAGDLVRVNMEVY-NEEGKKLTS----REYEYVISEDEDR--P-FVKDLVGKKKGDVVEIEREY--------------  211 (433)
T ss_dssp             CCCTTSEEEEEEEEE-CTTSCEEEE----EEEEEECCSSCCC--T-THHHHTTCCTTCEEEEEEEE--------------
T ss_pred             ccCCCCEEEEEEEEE-ECCEECcCC----CCCCeEEEecCCc--h-HHHHhCCCCCCceEEEEEee--------------
Confidence            357899999999988 589999764    3578888899887  3 99999999999999999843              


Q ss_pred             CCCCCCeEEEEEEEeeeec
Q 011003          365 VVPPNSTVHYEVELVSFEK  383 (496)
Q Consensus       365 ~ip~~~~l~f~v~l~~~~~  383 (496)
                         +|.+..|.|+|.++..
T Consensus       212 ---aGk~a~F~VtV~~Ik~  227 (433)
T 3gty_X          212 ---EGKKYTYKLEVEEVYK  227 (433)
T ss_dssp             ---TTEEEEEEEEEEEEEE
T ss_pred             ---CCCeEEEEEEEEEEEE
Confidence               3557999999999985

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.31  E-value=0.00015  Score=68.75  Aligned_cols=94  Identities=12%  Similarity=-0.012  Sum_probs=75.4

Q ss_pred             HHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHH
Q 011003          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKK  474 (496)
Q Consensus       395 ~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  474 (496)
                      ....+..+...|..++..|+|.+|+..|+++++++......       -.+....++.++|.+|..+++|.+|+..+.++
T Consensus        23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a   95 (311)
T 3nf1_A           23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGH-------DHPDVATMLNILALVYRDQNKYKDAANLLNDA   95 (311)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCS-------SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34556778889999999999999999999999975421100       03556788999999999999999999999999


Q ss_pred             hcc--------cCCCcchhcccccccccc
Q 011003          475 CES--------SVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       475 l~~--------dp~~~Ka~~rrg~a~~~l  495 (496)
                      +++        +|....+++..|.++..+
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (311)
T 3nf1_A           96 LAIREKTLGKDHPAVAATLNNLAVLYGKR  124 (311)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHHHHc
Confidence            987        456677888888777543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.28  E-value=0.00021  Score=67.80  Aligned_cols=90  Identities=14%  Similarity=0.003  Sum_probs=71.6

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      .+..+...|..++..|+|.+|+..|.+++++.......       -.+....++.|+|.++.++++|.+|+..+++++++
T Consensus       110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  182 (311)
T 3nf1_A          110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK-------DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI  182 (311)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC-------CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34456677888999999999999999999985221000       02456788999999999999999999999999998


Q ss_pred             --------cCCCcchhccccccccc
Q 011003          478 --------SVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       478 --------dp~~~Ka~~rrg~a~~~  494 (496)
                              +|....+++..|.++..
T Consensus       183 ~~~~~~~~~~~~~~~~~~la~~~~~  207 (311)
T 3nf1_A          183 YQTKLGPDDPNVAKTKNNLASCYLK  207 (311)
T ss_dssp             HHHTSCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHH
Confidence                    67777888888877654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.26  E-value=0.00028  Score=71.67  Aligned_cols=95  Identities=14%  Similarity=0.014  Sum_probs=70.9

Q ss_pred             HHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHH
Q 011003          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (496)
Q Consensus       394 e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~  473 (496)
                      +.+..+....+++...-..|+|.+|+..|.++|+........+       ++..+..++|+|.+|..+|+|++|+..+.+
T Consensus       293 ~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~  365 (433)
T 3qww_A          293 DMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDS-------NVYMLHMMYQAMGVCLYMQDWEGALKYGQK  365 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChh-------chHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            3344555566666666678999999999999999764432221       556688999999999999999999999999


Q ss_pred             Hhcc-----cCCC---cchhcccccccccc
Q 011003          474 KCES-----SVQK---GSGIHSDGRFRFGR  495 (496)
Q Consensus       474 al~~-----dp~~---~Ka~~rrg~a~~~l  495 (496)
                      +|++     -|++   ...|++.|.+|..+
T Consensus       366 aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~q  395 (433)
T 3qww_A          366 IIKPYSKHYPVYSLNVASMWLKLGRLYMGL  395 (433)
T ss_dssp             HHHHHHHHSCSSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHHHhc
Confidence            9976     2444   45677777766543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.26  E-value=0.00016  Score=74.83  Aligned_cols=79  Identities=13%  Similarity=0.037  Sum_probs=54.4

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .+...|..++..|+|.+|+..|.++++..+..               ..++.++|.++.++++|.+|+..++++++++|+
T Consensus       312 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  376 (537)
T 3fp2_A          312 TYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN---------------VYPYIQLACLLYKQGKFTESEAFFNETKLKFPT  376 (537)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            34456666777777777777777777753222               355677777777777777777777777777777


Q ss_pred             Ccchhccccccccc
Q 011003          481 KGSGIHSDGRFRFG  494 (496)
Q Consensus       481 ~~Ka~~rrg~a~~~  494 (496)
                      +..+++.+|.++..
T Consensus       377 ~~~~~~~l~~~~~~  390 (537)
T 3fp2_A          377 LPEVPTFFAEILTD  390 (537)
T ss_dssp             CTHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHH
Confidence            77777777766543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.24  E-value=0.00015  Score=57.48  Aligned_cols=48  Identities=10%  Similarity=0.025  Sum_probs=44.5

Q ss_pred             HHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003          448 VACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       448 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      ...+.++|.+++++++|.+|+..++++++++|++..+|+.+|.+++.+
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~   51 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKL   51 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence            567889999999999999999999999999999999999999988654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=97.20  E-value=0.00015  Score=73.89  Aligned_cols=84  Identities=11%  Similarity=-0.031  Sum_probs=63.3

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhcc--CHHHHHHHHHHHhcccC
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--DYKQAEKLCTKKCESSV  479 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~--~~~~Ai~~~~~al~~dp  479 (496)
                      +...|..++..|+|.+|+..|.+++++.+......       ......+++|++.++++++  +|++|+.++++||+++|
T Consensus        97 ~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p  169 (472)
T 4g1t_A           97 WGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY-------RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP  169 (472)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS-------CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc-------chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC
Confidence            34567788999999999999999999865432111       0112456778888877754  69999999999999999


Q ss_pred             CCcchhccccccc
Q 011003          480 QKGSGIHSDGRFR  492 (496)
Q Consensus       480 ~~~Ka~~rrg~a~  492 (496)
                      +|+.+++..|.++
T Consensus       170 ~~~~~~~~~~~~~  182 (472)
T 4g1t_A          170 KNPEFTSGLAIAS  182 (472)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            9998888777654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=97.19  E-value=0.00012  Score=74.54  Aligned_cols=85  Identities=14%  Similarity=-0.011  Sum_probs=63.1

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC--
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV--  479 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp--  479 (496)
                      +...|..++..|+|++|+..|++|++++......      ..++.....|.|+|.+|..+|+|.+|+.++++++++.+  
T Consensus        54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~------~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~  127 (472)
T 4g1t_A           54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHAD------QAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF  127 (472)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGG------GCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcc------ccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence            3456888899999999999999999985432110      00223367799999999999999999999999998754  


Q ss_pred             ------CCcchhccccccc
Q 011003          480 ------QKGSGIHSDGRFR  492 (496)
Q Consensus       480 ------~~~Ka~~rrg~a~  492 (496)
                            ....++..+|.++
T Consensus       128 ~~~~~~~~~~~~~~~g~~~  146 (472)
T 4g1t_A          128 SSPYRIESPELDCEEGWTR  146 (472)
T ss_dssp             CCSSCCCCHHHHHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHH
Confidence                  3344555555444

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.16  E-value=0.00047  Score=68.11  Aligned_cols=86  Identities=17%  Similarity=0.074  Sum_probs=60.4

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+...|..++..|+|.+|+..|.+++++.+....         ......++.|+|.+|.++++|.+|+..+++++++.
T Consensus       187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  257 (406)
T 3sf4_A          187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA  257 (406)
T ss_dssp             HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC---------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            345567788889999999999999999998654211         22335567777777777777777777777777766


Q ss_pred             CCC------cchhcccccccc
Q 011003          479 VQK------GSGIHSDGRFRF  493 (496)
Q Consensus       479 p~~------~Ka~~rrg~a~~  493 (496)
                      +..      ..+++..|.++.
T Consensus       258 ~~~~~~~~~~~~~~~la~~~~  278 (406)
T 3sf4_A          258 RQLKDRAVEAQSCYSLGNTYT  278 (406)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHH
T ss_pred             HhCcCchHHHHHHHHHHHHHH
Confidence            554      456666665554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.11  E-value=0.0006  Score=69.19  Aligned_cols=76  Identities=12%  Similarity=-0.055  Sum_probs=62.6

Q ss_pred             HHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHh
Q 011003          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKC  475 (496)
Q Consensus       396 ~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  475 (496)
                      ...+..+...|..+..+|+|++|+..|+++|...+.....+       .+.....++|+|..|..+|+|.+|+..+.+||
T Consensus       337 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-------Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          337 VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-------SLNVASMWLKLGRLYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            34566667788889999999999999999999865322211       55668889999999999999999999999999


Q ss_pred             ccc
Q 011003          476 ESS  478 (496)
Q Consensus       476 ~~d  478 (496)
                      ++-
T Consensus       410 ~i~  412 (433)
T 3qww_A          410 AIM  412 (433)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            863

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.08  E-value=0.00024  Score=72.75  Aligned_cols=82  Identities=12%  Similarity=0.145  Sum_probs=53.8

Q ss_pred             HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHh---ccCHHHHHHHHHHHhcccCC
Q 011003          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK---LKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~k---l~~~~~Ai~~~~~al~~dp~  480 (496)
                      ..|..+++.|+|.+|+..|.++++..+......         ....++.++|.++++   ++++.+|+..++++++++|+
T Consensus       377 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~  447 (514)
T 2gw1_A          377 FFAEILTDKNDFDKALKQYDLAIELENKLDGIY---------VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR  447 (514)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS---------SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH---------HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc
Confidence            345555556666666666666655432221100         002267888888888   88888888888888888888


Q ss_pred             Ccchhccccccccc
Q 011003          481 KGSGIHSDGRFRFG  494 (496)
Q Consensus       481 ~~Ka~~rrg~a~~~  494 (496)
                      +..+++.+|.++..
T Consensus       448 ~~~~~~~la~~~~~  461 (514)
T 2gw1_A          448 SEQAKIGLAQMKLQ  461 (514)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH
Confidence            88888888877654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.07  E-value=0.00015  Score=69.31  Aligned_cols=95  Identities=9%  Similarity=-0.069  Sum_probs=70.5

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccC--------------CCCChH-----HHHHHHHHHHHhhhHHHHHHHh
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD--------------TSFGDE-----EKKQAKALKVACNLNNAACKLK  460 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~--------------~~~~~~-----~~~~~~~~~~~~~~N~a~~~~k  460 (496)
                      ..+...|..+.+.|++++|+..|.+++..-+..              ....+.     .....++....++.|+|.+++.
T Consensus       152 ~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~  231 (287)
T 3qou_A          152 EIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQ  231 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            345568888999999999999999887643210              000100     0112234457789999999999


Q ss_pred             ccCHHHHHHHHHHHhcccCCC--cchhccccccccc
Q 011003          461 LKDYKQAEKLCTKKCESSVQK--GSGIHSDGRFRFG  494 (496)
Q Consensus       461 l~~~~~Ai~~~~~al~~dp~~--~Ka~~rrg~a~~~  494 (496)
                      +|++.+|+..+.++|+++|++  ..++.+.+.++..
T Consensus       232 ~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~  267 (287)
T 3qou_A          232 VGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA  267 (287)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence            999999999999999999999  8888888777654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.06  E-value=0.00057  Score=69.36  Aligned_cols=92  Identities=9%  Similarity=-0.020  Sum_probs=69.5

Q ss_pred             HHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHh
Q 011003          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKC  475 (496)
Q Consensus       396 ~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  475 (496)
                      +..+..+......+.++|+|++|+..|++++.........+       ++.....++|+|.+|..+|+|++|+..|.++|
T Consensus       284 ~~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~-------h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L  356 (429)
T 3qwp_A          284 WKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDI-------NIYQLKVLDCAMDACINLGLLEEALFYGTRTM  356 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTT-------SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCcc-------chHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            34455556666778889999999999999998754322211       45678899999999999999999999999999


Q ss_pred             ccc-----CCC---cchhccccccccc
Q 011003          476 ESS-----VQK---GSGIHSDGRFRFG  494 (496)
Q Consensus       476 ~~d-----p~~---~Ka~~rrg~a~~~  494 (496)
                      ++.     |++   ...|++.|.+|..
T Consensus       357 ~i~~~~lg~~Hp~~a~~l~nLa~~~~~  383 (429)
T 3qwp_A          357 EPYRIFFPGSHPVRGVQVMKVGKLQLH  383 (429)
T ss_dssp             HHHHHHSCSSCHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHcCCCChHHHHHHHHHHHHHHh
Confidence            763     444   4566777766654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.05  E-value=0.00033  Score=73.82  Aligned_cols=78  Identities=8%  Similarity=-0.034  Sum_probs=55.6

Q ss_pred             hhHHhhhhhHhccc----------HHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhcc--CHHHHH
Q 011003          401 KKKEQGNTLFKAGK----------YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--DYKQAE  468 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~----------y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~--~~~~Ai  468 (496)
                      .+.-++..+.+.++          |.+|+..|.++++.               ++....+|.+|+.+..+++  +|.+|+
T Consensus        65 aW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---------------~pK~y~aW~hR~w~l~~l~~~~~~~el  129 (567)
T 1dce_A           65 LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---------------NPKSYGTWHHRCWLLSRLPEPNWAREL  129 (567)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred             HHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHcccccHHHHH
Confidence            33445566666666          99999999999987               3344667777777777777  567777


Q ss_pred             HHHHHHhcccCCCcchhcccccccc
Q 011003          469 KLCTKKCESSVQKGSGIHSDGRFRF  493 (496)
Q Consensus       469 ~~~~~al~~dp~~~Ka~~rrg~a~~  493 (496)
                      +.|+++|++||+|..||+.|+.++.
T Consensus       130 ~~~~k~l~~d~~N~~aW~~R~~~l~  154 (567)
T 1dce_A          130 ELCARFLEADERNFHCWDYRRFVAA  154 (567)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccccccHHHHHHHHHH
Confidence            7777777777777777777765543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.05  E-value=0.00042  Score=68.98  Aligned_cols=87  Identities=13%  Similarity=0.185  Sum_probs=72.1

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc-
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES-  477 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~-  477 (496)
                      +..+...|..++..|+|.+|+..|.+++++.....         -.+....++.++|.+|..+++|.+|+..+.+++++ 
T Consensus        86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  156 (411)
T 4a1s_A           86 SAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN---------DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA  156 (411)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc---------CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            44567788999999999999999999999854321         14566889999999999999999999999999998 


Q ss_pred             -----cCCCcchhccccccccc
Q 011003          478 -----SVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       478 -----dp~~~Ka~~rrg~a~~~  494 (496)
                           .+....+++.+|.+|..
T Consensus       157 ~~~~~~~~~~~~~~~l~~~~~~  178 (411)
T 4a1s_A          157 RQLGDRLSEGRALYNLGNVYHA  178 (411)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhhchHHHHHHHHHHHHHHHH
Confidence                 56667788888877653

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.03  E-value=0.00023  Score=62.35  Aligned_cols=96  Identities=10%  Similarity=-0.009  Sum_probs=69.8

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCC---------------CCh--H---HHHHHHHHHHHhhhHHHHH
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS---------------FGD--E---EKKQAKALKVACNLNNAAC  457 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~---------------~~~--~---~~~~~~~~~~~~~~N~a~~  457 (496)
                      ....+...|..+++.|++++|+..|.++++.-+ +..               ..+  .   ...+..+....++.|+|.+
T Consensus        39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~  117 (176)
T 2r5s_A           39 RGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQ  117 (176)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            344566788888899999999999988876532 100               000  0   0011223346789999999


Q ss_pred             HHhccCHHHHHHHHHHHhcccCCC--cchhccccccccc
Q 011003          458 KLKLKDYKQAEKLCTKKCESSVQK--GSGIHSDGRFRFG  494 (496)
Q Consensus       458 ~~kl~~~~~Ai~~~~~al~~dp~~--~Ka~~rrg~a~~~  494 (496)
                      +.++|++.+|+..+.++|+++|++  ..+++..|.++..
T Consensus       118 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~  156 (176)
T 2r5s_A          118 YNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA  156 (176)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH
Confidence            999999999999999999999986  5588888877654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.02  E-value=0.00081  Score=64.09  Aligned_cols=85  Identities=7%  Similarity=-0.123  Sum_probs=62.9

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc---
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES---  477 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~---  477 (496)
                      -+...|..++..++|.+|+..|.+|+++.......         .....+++|+|.+|..+++|.+|+..+++||++   
T Consensus       117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  187 (293)
T 3u3w_A          117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA  187 (293)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence            33456777778889999999999999864322111         134668999999999999999999999999942   


Q ss_pred             ----cCCCcchhccccccccc
Q 011003          478 ----SVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       478 ----dp~~~Ka~~rrg~a~~~  494 (496)
                          .+....+|+..|.+|..
T Consensus       188 ~~~~~~~~~~~~~nlg~~y~~  208 (293)
T 3u3w_A          188 LHDNEEFDVKVRYNHAKALYL  208 (293)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHHH
Confidence                33345677877777654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.02  E-value=0.00082  Score=66.57  Aligned_cols=84  Identities=12%  Similarity=0.019  Sum_probs=66.8

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK  481 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~  481 (496)
                      +.-+|..++..|+|.+|+..|.+|++++.....         ......++.|+|.+|..++++..|+..+.+|+++.+.+
T Consensus       104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~  174 (378)
T 3q15_A          104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD---------DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH  174 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC---------hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence            445788889999999999999999998754311         34567899999999999999999999999999886542


Q ss_pred             -------cchhccccccccc
Q 011003          482 -------GSGIHSDGRFRFG  494 (496)
Q Consensus       482 -------~Ka~~rrg~a~~~  494 (496)
                             +.+++..|.++..
T Consensus       175 ~~~~~~~~~~~~~lg~~y~~  194 (378)
T 3q15_A          175 PLYSIRTIQSLFVIAGNYDD  194 (378)
T ss_dssp             TTCHHHHHHHHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHHH
Confidence                   3456666665543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.00  E-value=0.00039  Score=52.79  Aligned_cols=49  Identities=16%  Similarity=0.121  Sum_probs=44.8

Q ss_pred             HHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003          447 KVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       447 ~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      ...++.++|.+++++++|.+|+..++++++++|++..+++.+|.++..+
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~   56 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ   56 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            4677899999999999999999999999999999999999999887643

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=96.97  E-value=0.0015  Score=62.21  Aligned_cols=82  Identities=9%  Similarity=-0.079  Sum_probs=57.4

Q ss_pred             hhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHh---cccCCC
Q 011003          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKC---ESSVQK  481 (496)
Q Consensus       405 ~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al---~~dp~~  481 (496)
                      .|..+...|+|.+|+..|.+|++.......         ......+++|+|.+|..+++|.+|+..+++|+   +..|++
T Consensus       121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~  191 (293)
T 2qfc_A          121 VAAYVLKKVDYEYCILELKKLLNQQLTGID---------VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN  191 (293)
T ss_dssp             HHHHHHTSSCHHHHHHHHHHHHTTCCCSSC---------TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHhcCCc---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc
Confidence            444455666777777777777765432111         11236689999999999999999999999999   445553


Q ss_pred             c----chhcccccccccc
Q 011003          482 G----SGIHSDGRFRFGR  495 (496)
Q Consensus       482 ~----Ka~~rrg~a~~~l  495 (496)
                      .    .+|+..|.+|..+
T Consensus       192 ~~~~~~~~~nlg~~y~~~  209 (293)
T 2qfc_A          192 EEFDVKVRYNHAKALYLD  209 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             ccchHHHHHhHHHHHHHH
Confidence            2    6888888777543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.93  E-value=0.0012  Score=61.75  Aligned_cols=44  Identities=14%  Similarity=0.071  Sum_probs=32.5

Q ss_pred             HHhhhHHHHHHHh----ccCHHHHHHHHHHHhcccCCCcchhcccccccc
Q 011003          448 VACNLNNAACKLK----LKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRF  493 (496)
Q Consensus       448 ~~~~~N~a~~~~k----l~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~  493 (496)
                      ..++.|++.+|..    .+++.+|+..++++++++  +..+++..|.+|.
T Consensus        74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~  121 (273)
T 1ouv_A           74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYH  121 (273)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHH
Confidence            5567777777777    777888888888777763  6777777776664

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=96.92  E-value=0.00093  Score=63.60  Aligned_cols=86  Identities=17%  Similarity=0.074  Sum_probs=58.6

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+...|..++..|+|.+|+..|.+++++......         ......++.|+|.++.+++++.+|+..+++++++.
T Consensus       183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  253 (338)
T 3ro2_A          183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA  253 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            345566788889999999999999999988543211         23335566777777777777777777777777665


Q ss_pred             CCC------cchhcccccccc
Q 011003          479 VQK------GSGIHSDGRFRF  493 (496)
Q Consensus       479 p~~------~Ka~~rrg~a~~  493 (496)
                      +..      ..+++..|.++.
T Consensus       254 ~~~~~~~~~~~~~~~la~~~~  274 (338)
T 3ro2_A          254 RQLKDRAVEAQSCYSLGNTYT  274 (338)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHH
T ss_pred             HhhcchhHHHHHHHHHHHHHH
Confidence            544      445555555543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=96.89  E-value=0.0012  Score=68.12  Aligned_cols=75  Identities=9%  Similarity=-0.066  Sum_probs=61.8

Q ss_pred             HHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHh
Q 011003          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKC  475 (496)
Q Consensus       396 ~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  475 (496)
                      ...+..+...|..+..+|+|++|+..|.++|.........+       .+.....++|+|..|..+|+|.+|+..+.+||
T Consensus       348 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-------Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al  420 (490)
T 3n71_A          348 LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN-------NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY  420 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            34566666778888899999999999999999864322211       55668889999999999999999999999999


Q ss_pred             cc
Q 011003          476 ES  477 (496)
Q Consensus       476 ~~  477 (496)
                      ++
T Consensus       421 ~i  422 (490)
T 3n71_A          421 AI  422 (490)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=96.82  E-value=0.0013  Score=63.26  Aligned_cols=63  Identities=11%  Similarity=0.121  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHhh-hhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcc-hhccccccc
Q 011003          415 YARASKRYEKAVK-YIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGS-GIHSDGRFR  492 (496)
Q Consensus       415 y~~A~~~Y~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~K-a~~rrg~a~  492 (496)
                      +.+|+..|.+|++ +-+..               ..+|.+++..+.+++++.+|+..++++|+++|++.. +|+..|.++
T Consensus        80 ~~~A~~~~~rAl~~~~p~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  144 (308)
T 2ond_A           80 SDEAANIYERAISTLLKKN---------------MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFA  144 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHH
Confidence            4999999999999 43322               456666666666666777777777777766666665 666555443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.81  E-value=0.0024  Score=52.47  Aligned_cols=41  Identities=17%  Similarity=0.149  Sum_probs=37.1

Q ss_pred             HHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhc
Q 011003          446 LKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIH  486 (496)
Q Consensus       446 ~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~  486 (496)
                      ..-.|+..+|..|+|+++|.+|+..|+.+|+++|+|..|.-
T Consensus        72 ~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~  112 (126)
T 1nzn_A           72 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE  112 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence            45678899999999999999999999999999999987653

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.80  E-value=0.0021  Score=56.69  Aligned_cols=73  Identities=14%  Similarity=0.051  Sum_probs=58.2

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      .+..+...|..++..|+|.+|+..|.+|++++......        ......++.|+|.++..+++|.+|+..+.+++++
T Consensus        65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  136 (203)
T 3gw4_A           65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED--------PLAASANAYEVATVALHFGDLAGARQEYEKSLVY  136 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc--------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            45556678888999999999999999999986532110        2245678899999999999999999999999876


Q ss_pred             c
Q 011003          478 S  478 (496)
Q Consensus       478 d  478 (496)
                      .
T Consensus       137 ~  137 (203)
T 3gw4_A          137 A  137 (203)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=96.79  E-value=0.00095  Score=63.34  Aligned_cols=82  Identities=15%  Similarity=0.058  Sum_probs=61.3

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc--
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS--  478 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d--  478 (496)
                      ..-..|..+++.++|.+|+..|+++++.-.             +.....++.|++.++..+|+|.+|+..+++++...  
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d-------------~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~  203 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPD-------------KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAG  203 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC-------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccCC-------------cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCC
Confidence            445677788899999999999987766410             11234578888888888888888888888888554  


Q ss_pred             CC-Ccchhcccccccccc
Q 011003          479 VQ-KGSGIHSDGRFRFGR  495 (496)
Q Consensus       479 p~-~~Ka~~rrg~a~~~l  495 (496)
                      |. ...++|++|.|++.+
T Consensus       204 P~~~~da~~~~glaL~~l  221 (282)
T 4f3v_A          204 EACARAIAWYLAMARRSQ  221 (282)
T ss_dssp             TTTHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHc
Confidence            55 567888888887654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.78  E-value=0.0016  Score=65.99  Aligned_cols=77  Identities=9%  Similarity=-0.095  Sum_probs=64.0

Q ss_pred             HHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHH
Q 011003          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (496)
Q Consensus       394 e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~  473 (496)
                      +....+..+...|..+..+|+|++|+..|.++|..........       .+.....++|+|..|..+|+|.+|+..+.+
T Consensus       324 ~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~-------Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~  396 (429)
T 3qwp_A          324 INIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS-------HPVRGVQVMKVGKLQLHQGMFPQAMKNLRL  396 (429)
T ss_dssp             TSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            3456677777888889999999999999999999864322211       566788999999999999999999999999


Q ss_pred             Hhcc
Q 011003          474 KCES  477 (496)
Q Consensus       474 al~~  477 (496)
                      ||++
T Consensus       397 Al~i  400 (429)
T 3qwp_A          397 AFDI  400 (429)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9976

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=96.77  E-value=0.0016  Score=68.20  Aligned_cols=92  Identities=11%  Similarity=-0.072  Sum_probs=50.0

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCC-------------CChHHHHHH------HHHHHHhhhHHHHHHHhcc
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-------------FGDEEKKQA------KALKVACNLNNAACKLKLK  462 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~-------------~~~~~~~~~------~~~~~~~~~N~a~~~~kl~  462 (496)
                      +...|..+++.|++++|+..|.++++..+.+..             ..++-...+      .+....++++++.+|.+.|
T Consensus       376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  455 (597)
T 2xpi_A          376 WLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG  455 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC
Confidence            344667777888888888888888775322100             000000000      1112334556666666666


Q ss_pred             CHHHHHHHHHHHhcccCCCcchhcccccccc
Q 011003          463 DYKQAEKLCTKKCESSVQKGSGIHSDGRFRF  493 (496)
Q Consensus       463 ~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~  493 (496)
                      ++.+|+..++++++++|+++.+|+.+|.+|.
T Consensus       456 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  486 (597)
T 2xpi_A          456 NILLANEYLQSSYALFQYDPLLLNELGVVAF  486 (597)
T ss_dssp             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            6666666666666666666666665555543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.76  E-value=0.0018  Score=50.40  Aligned_cols=66  Identities=15%  Similarity=0.046  Sum_probs=55.7

Q ss_pred             hhHHhhhhhHhccc---HHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          401 KKKEQGNTLFKAGK---YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~---y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      .+-..|..+|-.++   ..+|...+.+||++               ++.....+..++..+++.++|.+|+....++|+.
T Consensus         8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~---------------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQL---------------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            44556777765444   79999999999998               4445888889999999999999999999999999


Q ss_pred             cCCC
Q 011003          478 SVQK  481 (496)
Q Consensus       478 dp~~  481 (496)
                      +|.+
T Consensus        73 ~p~~   76 (93)
T 3bee_A           73 NDPN   76 (93)
T ss_dssp             CCTT
T ss_pred             CCCC
Confidence            9983

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.76  E-value=0.00077  Score=71.04  Aligned_cols=88  Identities=8%  Similarity=-0.097  Sum_probs=71.4

Q ss_pred             HHHHHHHhhhHHhhhhhHhcccH-HHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccC--------
Q 011003          393 EEKIEAAGKKKEQGNTLFKAGKY-ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD--------  463 (496)
Q Consensus       393 ~e~~~~a~~~k~~Gn~~fk~~~y-~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~--------  463 (496)
                      ..|++.-.........+.+.++| ++|+..|.+++.+               ++....+|++|+.+..++++        
T Consensus        22 ~~k~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~---------------nP~~~taW~~R~~~l~~l~~~~~~~~~~   86 (567)
T 1dce_A           22 EQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGA---------------NPDFATLWNCRREVLQHLETEKSPEESA   86 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---------------CchhHHHHHHHHHHHHhcccccchhhhh
Confidence            34555555555555555666665 6779999999998               55558999999999999999        


Q ss_pred             --HHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003          464 --YKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       464 --~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                        +.+|++.+++||+.+|+|..||+.|+.++..+
T Consensus        87 ~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l  120 (567)
T 1dce_A           87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL  120 (567)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence              99999999999999999999999999876543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.72  E-value=0.00054  Score=53.30  Aligned_cols=45  Identities=9%  Similarity=-0.083  Sum_probs=41.3

Q ss_pred             hhHHHHHHHhccCHHHHHHHHHHHhcccCCCcc-hhcccccccccc
Q 011003          451 NLNNAACKLKLKDYKQAEKLCTKKCESSVQKGS-GIHSDGRFRFGR  495 (496)
Q Consensus       451 ~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~K-a~~rrg~a~~~l  495 (496)
                      ..++|.++++.++|.+|+..++++++++|++.. +|+.+|.+++.+
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~   48 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKL   48 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHc
Confidence            468999999999999999999999999999999 999999887643

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=96.72  E-value=0.0015  Score=62.51  Aligned_cols=68  Identities=9%  Similarity=0.015  Sum_probs=55.2

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHH-HHHHHHHHhcccCC
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ-AEKLCTKKCESSVQ  480 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~-Ai~~~~~al~~dp~  480 (496)
                      +...|..+.+.|+|.+|...|.+|++.-               +....++.|++.++..+|++.+ +...++++++++|+
T Consensus       203 ~~~la~~~~~~g~~~eA~~~l~~al~~~---------------p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~  267 (291)
T 3mkr_A          203 LNGQAACHMAQGRWEAAEGVLQEALDKD---------------SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS  267 (291)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence            3456777778888888888888888873               3347789999999999999987 56788999999999


Q ss_pred             Ccch
Q 011003          481 KGSG  484 (496)
Q Consensus       481 ~~Ka  484 (496)
                      ++.+
T Consensus       268 ~~~~  271 (291)
T 3mkr_A          268 HPFI  271 (291)
T ss_dssp             CHHH
T ss_pred             ChHH
Confidence            9754

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=96.68  E-value=0.002  Score=58.28  Aligned_cols=76  Identities=14%  Similarity=0.011  Sum_probs=59.1

Q ss_pred             HhhhhhHh----cccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHh----ccCHHHHHHHHHHHh
Q 011003          404 EQGNTLFK----AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----LKDYKQAEKLCTKKC  475 (496)
Q Consensus       404 ~~Gn~~fk----~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~k----l~~~~~Ai~~~~~al  475 (496)
                      ..|..++.    .+++.+|+..|++|++.-+.             .....++.|++.+|..    .+++.+|+..+.+|+
T Consensus        90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~-------------~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~  156 (212)
T 3rjv_A           90 VLARVLVNRQAGATDVAHAITLLQDAARDSES-------------DAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS  156 (212)
T ss_dssp             HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS-------------HHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC-------------cchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            34555555    67888888888888875110             0236788999999999    899999999999999


Q ss_pred             cccCCCcchhcccccccc
Q 011003          476 ESSVQKGSGIHSDGRFRF  493 (496)
Q Consensus       476 ~~dp~~~Ka~~rrg~a~~  493 (496)
                      ++ +.+..|+|..|.+|.
T Consensus       157 ~~-~~~~~a~~~Lg~~y~  173 (212)
T 3rjv_A          157 SL-SRTGYAEYWAGMMFQ  173 (212)
T ss_dssp             HT-SCTTHHHHHHHHHHH
T ss_pred             Hc-CCCHHHHHHHHHHHH
Confidence            98 778889999988774

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.67  E-value=0.0019  Score=53.24  Aligned_cols=41  Identities=15%  Similarity=0.087  Sum_probs=36.9

Q ss_pred             HHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhc
Q 011003          446 LKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIH  486 (496)
Q Consensus       446 ~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~  486 (496)
                      ..-.|+..+|.++.|+|+|.+|+.+|+.+|+++|+|..|.-
T Consensus        76 ~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~  116 (134)
T 3o48_A           76 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  116 (134)
T ss_dssp             GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence            45778889999999999999999999999999999987653

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=96.63  E-value=0.0014  Score=63.13  Aligned_cols=68  Identities=13%  Similarity=0.021  Sum_probs=60.4

Q ss_pred             HhcccH-HHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhcc--CHHHHHHHHHHHhcccCCCcchhc
Q 011003          410 FKAGKY-ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--DYKQAEKLCTKKCESSVQKGSGIH  486 (496)
Q Consensus       410 fk~~~y-~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~--~~~~Ai~~~~~al~~dp~~~Ka~~  486 (496)
                      .+++.| ++|+..+.++|.+               ++....++++|..+...++  ++.+++..++++|.++|+|..+|+
T Consensus        43 ~~~~e~s~~aL~~t~~~L~~---------------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~  107 (306)
T 3dra_A           43 MKAEEYSERALHITELGINE---------------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWN  107 (306)
T ss_dssp             HHTTCCSHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHH---------------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHH
Confidence            344444 6899999999998               4555899999999999999  999999999999999999999999


Q ss_pred             cccccc
Q 011003          487 SDGRFR  492 (496)
Q Consensus       487 rrg~a~  492 (496)
                      .|+.++
T Consensus       108 ~R~~iL  113 (306)
T 3dra_A          108 YRQLII  113 (306)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998877

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=96.60  E-value=0.00095  Score=64.44  Aligned_cols=95  Identities=8%  Similarity=-0.153  Sum_probs=63.5

Q ss_pred             hhhHHhhhhhHhcc--cHHHHHHHHHHHhhhhccC-----------------C---CCChHHH------HHHHHHHHHhh
Q 011003          400 GKKKEQGNTLFKAG--KYARASKRYEKAVKYIEYD-----------------T---SFGDEEK------KQAKALKVACN  451 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~--~y~~A~~~Y~~al~~~~~~-----------------~---~~~~~~~------~~~~~~~~~~~  451 (496)
                      ..+.-+|..+...+  ++.+|+..+.++|..-+..                 .   ...+++.      .+.++....++
T Consensus        68 taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW  147 (306)
T 3dra_A           68 TIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVW  147 (306)
T ss_dssp             HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            34456777777777  9999999999999863221                 0   0111221      12333446677


Q ss_pred             hHHHHHHHhccCHH--HHHHHHHHHhcccCCCcchhccccccccc
Q 011003          452 LNNAACKLKLKDYK--QAEKLCTKKCESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       452 ~N~a~~~~kl~~~~--~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~  494 (496)
                      ++|..+..+++.|.  ++++.|+++|+.||.|.-||..|+.++..
T Consensus       148 ~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~  192 (306)
T 3dra_A          148 SYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS  192 (306)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            77777777777777  78888888888888888888777766543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.57  E-value=0.0023  Score=59.85  Aligned_cols=45  Identities=20%  Similarity=0.254  Sum_probs=37.1

Q ss_pred             HHhhhHHHHHHHh----ccCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003          448 VACNLNNAACKLK----LKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       448 ~~~~~N~a~~~~k----l~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~  494 (496)
                      ..++.|++.+|.+    .+++.+|+..++++++++  +..++++.|.+|..
T Consensus       110 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~  158 (273)
T 1ouv_A          110 AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDA  158 (273)
T ss_dssp             HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHc
Confidence            5678889999998    899999999999998875  67888888877653

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=96.37  E-value=0.0026  Score=57.50  Aligned_cols=96  Identities=15%  Similarity=0.035  Sum_probs=66.9

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhc-----------cCCCC--ChHHH-----HHHHHHHHHhhhHHHHHHHh
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIE-----------YDTSF--GDEEK-----KQAKALKVACNLNNAACKLK  460 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~-----------~~~~~--~~~~~-----~~~~~~~~~~~~N~a~~~~k  460 (496)
                      +......|..++..+++.+|+..|++|++.-.           .....  +.++-     ..++.-...++.|++.+|+.
T Consensus        18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~   97 (212)
T 3rjv_A           18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVN   97 (212)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence            34555677778888999999999999887411           00111  11111     12233346678899999988


Q ss_pred             ----ccCHHHHHHHHHHHhcccC--CCcchhccccccccc
Q 011003          461 ----LKDYKQAEKLCTKKCESSV--QKGSGIHSDGRFRFG  494 (496)
Q Consensus       461 ----l~~~~~Ai~~~~~al~~dp--~~~Ka~~rrg~a~~~  494 (496)
                          .+++.+|+..+.+|++..+  +++.|++..|.+|..
T Consensus        98 g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~  137 (212)
T 3rjv_A           98 RQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS  137 (212)
T ss_dssp             GGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred             CCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence                8899999999999999887  458999998887754

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.36  E-value=0.0032  Score=52.58  Aligned_cols=39  Identities=15%  Similarity=0.117  Sum_probs=35.5

Q ss_pred             HHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchh
Q 011003          447 KVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGI  485 (496)
Q Consensus       447 ~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~  485 (496)
                      +-.|+..+|.+++|+++|.+|+.+|+.+|+++|+|..|.
T Consensus        76 ~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~  114 (144)
T 1y8m_A           76 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  114 (144)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred             hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence            466888999999999999999999999999999997654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=96.28  E-value=0.0027  Score=60.93  Aligned_cols=68  Identities=10%  Similarity=0.096  Sum_probs=37.4

Q ss_pred             HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcc
Q 011003          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGS  483 (496)
Q Consensus       404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~K  483 (496)
                      ..|+.+.+.|++.+|...|++|++.-+....              .+|.|++.++.+++++.+|+..+++|++++|.+..
T Consensus       104 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~  169 (308)
T 2ond_A          104 AYADYEESRMKYEKVHSIYNRLLAIEDIDPT--------------LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH  169 (308)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH--------------HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhccccCcc--------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH
Confidence            4555666788888999999988886332210              13444444444444444444444444444444433


Q ss_pred             hh
Q 011003          484 GI  485 (496)
Q Consensus       484 a~  485 (496)
                      +|
T Consensus       170 ~~  171 (308)
T 2ond_A          170 VY  171 (308)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=96.23  E-value=0.0021  Score=62.58  Aligned_cols=91  Identities=8%  Similarity=-0.053  Sum_probs=63.3

Q ss_pred             HHhhhhhHhcccHH-HHHHHHHHHhhhhccCCC---------------CC--------hHHH------HHHHHHHHHhhh
Q 011003          403 KEQGNTLFKAGKYA-RASKRYEKAVKYIEYDTS---------------FG--------DEEK------KQAKALKVACNL  452 (496)
Q Consensus       403 k~~Gn~~fk~~~y~-~A~~~Y~~al~~~~~~~~---------------~~--------~~~~------~~~~~~~~~~~~  452 (496)
                      .+.-....+.|+|. +|+..+.++|.+-+....               .+        +++.      ...++....+++
T Consensus        33 ~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~  112 (331)
T 3dss_A           33 TQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWH  112 (331)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence            33444444677776 799999999986432100               00        0111      122344567788


Q ss_pred             HHHHHHHhccC--HHHHHHHHHHHhcccCCCcchhcccccccc
Q 011003          453 NNAACKLKLKD--YKQAEKLCTKKCESSVQKGSGIHSDGRFRF  493 (496)
Q Consensus       453 N~a~~~~kl~~--~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~  493 (496)
                      +|..+..+++.  |.+++..|+++|++||.|..||+.|+.++.
T Consensus       113 hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~  155 (331)
T 3dss_A          113 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAA  155 (331)
T ss_dssp             HHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999  889999999999999999999998886654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=96.20  E-value=0.0021  Score=63.02  Aligned_cols=46  Identities=2%  Similarity=-0.240  Sum_probs=32.7

Q ss_pred             HHHhhhHHHHHHHhc-c-CHHHHHHHHHHHhcccCCCcchhccccccc
Q 011003          447 KVACNLNNAACKLKL-K-DYKQAEKLCTKKCESSVQKGSGIHSDGRFR  492 (496)
Q Consensus       447 ~~~~~~N~a~~~~kl-~-~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~  492 (496)
                      ...++++|..|..++ + ++.+++..|+++|++||.|..||+.|+.++
T Consensus       122 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl  169 (349)
T 3q7a_A          122 SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLY  169 (349)
T ss_dssp             CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            366677777777776 6 677777777777777777777777666544

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=96.12  E-value=0.0029  Score=61.56  Aligned_cols=80  Identities=8%  Similarity=-0.107  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHhhhhccC--------------CC-CChHHH------HHHHHHHHHhhhHHHHHHHhccC-HHHHHHHHH
Q 011003          415 YARASKRYEKAVKYIEYD--------------TS-FGDEEK------KQAKALKVACNLNNAACKLKLKD-YKQAEKLCT  472 (496)
Q Consensus       415 y~~A~~~Y~~al~~~~~~--------------~~-~~~~~~------~~~~~~~~~~~~N~a~~~~kl~~-~~~Ai~~~~  472 (496)
                      +.+++..+.+++..-+.+              .. .-+++.      .+.++....++++|..+..+++. +.+++++++
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~  169 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD  169 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence            778888888888753211              11 011222      23445557889999999999999 699999999


Q ss_pred             HHhcccCCCcchhccccccccc
Q 011003          473 KKCESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       473 ~al~~dp~~~Ka~~rrg~a~~~  494 (496)
                      ++|+.+|+|.-||+.|+.++..
T Consensus       170 ~~I~~~p~N~SAW~~R~~ll~~  191 (331)
T 3dss_A          170 SLITRNFSNYSSWHYRSCLLPQ  191 (331)
T ss_dssp             HHHHHCSCCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHH
Confidence            9999999999999999877654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.05  E-value=0.017  Score=49.64  Aligned_cols=76  Identities=16%  Similarity=0.156  Sum_probs=50.6

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCCh--------HHHH-H-HHHHHHHhhhHHHHHHHhccCHHHHH
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD--------EEKK-Q-AKALKVACNLNNAACKLKLKDYKQAE  468 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~--------~~~~-~-~~~~~~~~~~N~a~~~~kl~~~~~Ai  468 (496)
                      +..+---|+.+|.+++|.+|...|++||.....-.....        .... . -......+...+|.||++++++.+||
T Consensus        63 ~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai  142 (167)
T 3ffl_A           63 YQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAI  142 (167)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHH
Confidence            344556799999999999999999999987542211100        0000 0 00112356677999999999999999


Q ss_pred             HHHHHH
Q 011003          469 KLCTKK  474 (496)
Q Consensus       469 ~~~~~a  474 (496)
                      ...+.+
T Consensus       143 ~~Le~I  148 (167)
T 3ffl_A          143 AILDGI  148 (167)
T ss_dssp             HHHHTS
T ss_pred             HHHhcC
Confidence            986653

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=95.96  E-value=0.0046  Score=60.50  Aligned_cols=68  Identities=12%  Similarity=-0.031  Sum_probs=59.9

Q ss_pred             cccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhcc-CHHHHHHHHHHHhcccCCCcchhccccc
Q 011003          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKKCESSVQKGSGIHSDGR  490 (496)
Q Consensus       412 ~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~-~~~~Ai~~~~~al~~dp~~~Ka~~rrg~  490 (496)
                      .+...+|+..+.++|.+               ++....++++|..+...++ .+.+++..++++|..+|+|..||+-|+.
T Consensus        67 ~e~se~AL~lt~~~L~~---------------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~w  131 (349)
T 3q7a_A           67 EEKSERALELTEIIVRM---------------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLL  131 (349)
T ss_dssp             TCCSHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHh---------------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            34557899999999998               4455899999999999999 5999999999999999999999999987


Q ss_pred             cccc
Q 011003          491 FRFG  494 (496)
Q Consensus       491 a~~~  494 (496)
                      ++..
T Consensus       132 lL~~  135 (349)
T 3q7a_A          132 LLDR  135 (349)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=95.91  E-value=0.0098  Score=58.26  Aligned_cols=72  Identities=18%  Similarity=0.039  Sum_probs=54.2

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      +...|..++..|+|.+|+..|.++++.........       .+....++.|++.++..+|++.+|+..+.+++++.+.
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ-------LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT-------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc-------CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            34567778889999999999999988754221100       0234667888999999999999999999999988765

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=95.81  E-value=0.0095  Score=58.36  Aligned_cols=86  Identities=7%  Similarity=-0.034  Sum_probs=63.6

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+...|..++..|+|.+|...|.+++.+......         ......+++|++.++..+|+|.+|+..+++++++.
T Consensus        53 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  123 (373)
T 1hz4_A           53 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV---------WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI  123 (373)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc---------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            344566778888899999999999999987543211         22346678999999999999999999999999875


Q ss_pred             C--------CCcchhcccccccc
Q 011003          479 V--------QKGSGIHSDGRFRF  493 (496)
Q Consensus       479 p--------~~~Ka~~rrg~a~~  493 (496)
                      +        ....+++..|.++.
T Consensus       124 ~~~~~~~~~~~~~~~~~la~~~~  146 (373)
T 1hz4_A          124 NEQHLEQLPMHEFLVRIRAQLLW  146 (373)
T ss_dssp             HHTTCTTSTHHHHHHHHHHHHHH
T ss_pred             HHhccccCcHHHHHHHHHHHHHH
Confidence            3        23345555555543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=95.80  E-value=0.0076  Score=50.43  Aligned_cols=69  Identities=13%  Similarity=-0.023  Sum_probs=40.7

Q ss_pred             hhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHh----ccCHHHHHHHHHHHhcccCC
Q 011003          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----LKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       405 ~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~k----l~~~~~Ai~~~~~al~~dp~  480 (496)
                      .|..++..+.+.+|+..|++|.+.=                 ....+.|++.+|+.    .+++.+|+..+++|.+.  .
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g-----------------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g   91 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELN-----------------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--N   91 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTT-----------------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--T
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCC-----------------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--C
Confidence            3444455566666777777777641                 14455566666666    56666666666666554  4


Q ss_pred             Ccchhccccccc
Q 011003          481 KGSGIHSDGRFR  492 (496)
Q Consensus       481 ~~Ka~~rrg~a~  492 (496)
                      ++.|+++.|.+|
T Consensus        92 ~~~a~~~Lg~~y  103 (138)
T 1klx_A           92 DQDGCLILGYKQ  103 (138)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            555665555544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=95.63  E-value=0.014  Score=55.25  Aligned_cols=72  Identities=11%  Similarity=-0.050  Sum_probs=58.8

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHH-HHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKAL-KVACNLNNAACKLKLKDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp  479 (496)
                      ..--.|..+-..|++.+|+..|.+++.-- .            .+. ....+.|++.|+.++|+..+|...+++++..+|
T Consensus       173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~-~------------~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P  239 (282)
T 4f3v_A          173 AGVAHGVAAANLALFTEAERRLTEANDSP-A------------GEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP  239 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTST-T------------TTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhcCC-C------------CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            44556888889999999999999998531 0            011 466789999999999999999999999999999


Q ss_pred             CCcchhc
Q 011003          480 QKGSGIH  486 (496)
Q Consensus       480 ~~~Ka~~  486 (496)
                      + .+++.
T Consensus       240 ~-~~~~~  245 (282)
T 4f3v_A          240 E-PKVAA  245 (282)
T ss_dssp             C-HHHHH
T ss_pred             c-HHHHH
Confidence            8 66544

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.50  E-value=0.013  Score=58.50  Aligned_cols=83  Identities=12%  Similarity=0.108  Sum_probs=61.0

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCCh--HHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD--EEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~--~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp  479 (496)
                      ..++|..+++.|+|.+|++.|.++++..+.......  ............++.|++.+|.++|+|++|++...+++.+.+
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~   86 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM   86 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            446788899999999999999999987654322110  000111233456788999999999999999999999998877


Q ss_pred             CCcch
Q 011003          480 QKGSG  484 (496)
Q Consensus       480 ~~~Ka  484 (496)
                      ...++
T Consensus        87 ~~~~~   91 (434)
T 4b4t_Q           87 QFAKS   91 (434)
T ss_dssp             TSCHH
T ss_pred             Hccch
Confidence            65554

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=95.33  E-value=0.032  Score=46.50  Aligned_cols=69  Identities=19%  Similarity=0.094  Sum_probs=55.2

Q ss_pred             hHHhhhhhHh----cccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHh----ccCHHHHHHHHHH
Q 011003          402 KKEQGNTLFK----AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----LKDYKQAEKLCTK  473 (496)
Q Consensus       402 ~k~~Gn~~fk----~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~k----l~~~~~Ai~~~~~  473 (496)
                      ....|..++.    .+++.+|+..|++|.+.  .               ....+.|++.+|..    .+++.+|+..+.+
T Consensus        60 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g---------------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~  122 (138)
T 1klx_A           60 CRFLGDFYENGKYVKKDLRKAAQYYSKACGL--N---------------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEK  122 (138)
T ss_dssp             HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--T---------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--C---------------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence            3445556666    78999999999999875  1               16678999999999    9999999999999


Q ss_pred             HhcccCCCcchhcccc
Q 011003          474 KCESSVQKGSGIHSDG  489 (496)
Q Consensus       474 al~~dp~~~Ka~~rrg  489 (496)
                      |++.  .+..|.++.+
T Consensus       123 Aa~~--g~~~A~~~l~  136 (138)
T 1klx_A          123 ACRL--GSEDACGILN  136 (138)
T ss_dssp             HHHT--TCHHHHHHC-
T ss_pred             HHHC--CCHHHHHHHh
Confidence            9988  4666666554

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=94.52  E-value=0.14  Score=43.94  Aligned_cols=70  Identities=11%  Similarity=0.056  Sum_probs=59.0

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCC-ChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-GDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~-~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      .+.++...++..+.|..|+-.++.++.+.+.+... .       ......++..+|.+++..++|.+|+..+.+||++
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~s-------p~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~   92 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFS-------PPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ   92 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSC-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCccccc-------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            45678888999999999999999999987554432 2       4456788999999999999999999999999865

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.46  E-value=0.12  Score=51.29  Aligned_cols=95  Identities=12%  Similarity=-0.042  Sum_probs=75.1

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccC-------CCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHH
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-------TSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL  470 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~-------~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~  470 (496)
                      ...++-.+|......++...|+..|.+|+.++...       ..+-..+...+......+...++.+++.++++.+|+..
T Consensus       114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~  193 (388)
T 2ff4_A          114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE  193 (388)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            34555666777777899999999999999986432       12223556788889999999999999999999999999


Q ss_pred             HHHHhcccCCCcchhccccccc
Q 011003          471 CTKKCESSVQKGSGIHSDGRFR  492 (496)
Q Consensus       471 ~~~al~~dp~~~Ka~~rrg~a~  492 (496)
                      |..++..+|-+..+|...-+||
T Consensus       194 l~~~~~~~P~~E~~~~~lm~al  215 (388)
T 2ff4_A          194 LEALTFEHPYREPLWTQLITAY  215 (388)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHH
Confidence            9999999999876665554444

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.45  E-value=0.026  Score=56.32  Aligned_cols=70  Identities=10%  Similarity=0.071  Sum_probs=57.7

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp  479 (496)
                      -....|+.++..|+|.+|+..+++++..+.....         .+....++++++.+|+.+++|.+|...+++++.+.+
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDD---------KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC---------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc---------chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence            3456788899999999999999999987654321         234577899999999999999999999999998754

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=94.38  E-value=0.044  Score=56.65  Aligned_cols=66  Identities=12%  Similarity=0.140  Sum_probs=48.5

Q ss_pred             cccHH-------HHHHHHHHHhh-hhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCc-
Q 011003          412 AGKYA-------RASKRYEKAVK-YIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKG-  482 (496)
Q Consensus       412 ~~~y~-------~A~~~Y~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~-  482 (496)
                      .|++.       +|+..|.+|++ ..+..               ..++.+++..+.+++++.+|+..++++|+++|++. 
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~---------------~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  356 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAISTLLKKN---------------MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT  356 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTCSSC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCch
Confidence            68876       89999999997 54432               56777777777778888888888888888777764 


Q ss_pred             chhccccccc
Q 011003          483 SGIHSDGRFR  492 (496)
Q Consensus       483 Ka~~rrg~a~  492 (496)
                      .+|...+.++
T Consensus       357 ~~~~~~~~~~  366 (530)
T 2ooe_A          357 LVYIQYMKFA  366 (530)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5666655443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=94.23  E-value=0.063  Score=54.86  Aligned_cols=45  Identities=11%  Similarity=0.092  Sum_probs=37.1

Q ss_pred             HHhhhHHHHHHHh----ccCHHHHHHHHHHHhcccCC---Ccchhccccccc
Q 011003          448 VACNLNNAACKLK----LKDYKQAEKLCTKKCESSVQ---KGSGIHSDGRFR  492 (496)
Q Consensus       448 ~~~~~N~a~~~~k----l~~~~~Ai~~~~~al~~dp~---~~Ka~~rrg~a~  492 (496)
                      ..++.|++.+|.+    .+++.+|+..+++|++.+|+   +..|++..|..+
T Consensus       399 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~  450 (490)
T 2xm6_A          399 SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLT  450 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcC
Confidence            5678899999998    89999999999999999844   888888777654

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=93.91  E-value=0.08  Score=39.96  Aligned_cols=42  Identities=24%  Similarity=0.184  Sum_probs=35.8

Q ss_pred             cChHH-HHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhcc
Q 011003          390 MNTEE-KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (496)
Q Consensus       390 ~~~~e-~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~  431 (496)
                      |+..+ .++.|..+-.+|...=+.|+|.+|+.+|..|+++|..
T Consensus         1 M~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~   43 (83)
T 2v6y_A            1 MSAQVMLEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQ   43 (83)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            34455 6778889999999999999999999999999998743

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=93.89  E-value=0.021  Score=57.57  Aligned_cols=51  Identities=18%  Similarity=0.210  Sum_probs=33.7

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHH
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKK  474 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  474 (496)
                      .+...|+.+|..|+|++|...|+++                       ..|.++|.|+.++|+|++|++.+.+|
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a-----------------------~n~~~LA~~L~~Lg~yq~AVea~~KA  174 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV-----------------------SNFGRLASTLVHLGEYQAAVDGARKA  174 (449)
T ss_dssp             -------------CTTTHHHHHHHT-----------------------TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh-----------------------hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence            7788899999999999999999976                       24678999999999999999999999

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=93.76  E-value=0.1  Score=53.92  Aligned_cols=64  Identities=17%  Similarity=0.080  Sum_probs=55.7

Q ss_pred             HhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccc
Q 011003          410 FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDG  489 (496)
Q Consensus       410 fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg  489 (496)
                      .+.|++.+|...|.+|++.++.+               ..+|.+.+..+++++++.+|+..+++|++..| ++..|+..+
T Consensus        23 ~~~~~~~~a~~~~e~al~~~P~~---------------~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~   86 (530)
T 2ooe_A           23 AQNQPIDKARKTYERLVAQFPSS---------------GRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYL   86 (530)
T ss_dssp             HHSSCHHHHHHHHHHHHTTCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHH
Confidence            45789999999999999986554               78899999999999999999999999999999 676665444

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=93.68  E-value=0.03  Score=56.89  Aligned_cols=89  Identities=18%  Similarity=0.030  Sum_probs=49.0

Q ss_pred             HHhhhhhHhcc---cHHHHHHHHHHHhhhhccC--------------CCCChHHHHHHH------HHHHHhhhHHHHH-H
Q 011003          403 KEQGNTLFKAG---KYARASKRYEKAVKYIEYD--------------TSFGDEEKKQAK------ALKVACNLNNAAC-K  458 (496)
Q Consensus       403 k~~Gn~~fk~~---~y~~A~~~Y~~al~~~~~~--------------~~~~~~~~~~~~------~~~~~~~~N~a~~-~  458 (496)
                      ...|..+.+.|   ++.+|+..|++|++.-+..              .....+..+.+.      +-...++.|++.+ +
T Consensus       180 ~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~  259 (452)
T 3e4b_A          180 VELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLY  259 (452)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            34566667778   9999999999998752211              000000000000      2233455666666 3


Q ss_pred             --HhccCHHHHHHHHHHHhcccCCCcchhcccccccc
Q 011003          459 --LKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRF  493 (496)
Q Consensus       459 --~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~  493 (496)
                        ...+++.+|+..+.++++.  .++.|++..|.+|.
T Consensus       260 ~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~  294 (452)
T 3e4b_A          260 DFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY  294 (452)
T ss_dssp             HSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             hCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence              3556666666666666643  36666666665553

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=93.42  E-value=0.2  Score=50.40  Aligned_cols=97  Identities=8%  Similarity=-0.095  Sum_probs=65.9

Q ss_pred             HHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhc------cCCCCChHHHHHHHH------HHHHhhhHHHHHHHhc
Q 011003          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIE------YDTSFGDEEKKQAKA------LKVACNLNNAACKLKL  461 (496)
Q Consensus       394 e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~------~~~~~~~~~~~~~~~------~~~~~~~N~a~~~~kl  461 (496)
                      .-...+..+...|+.+++.|+|++|+..|.+|...-.      .+-...+  ......      ..+.-+..++.+|.+.
T Consensus       143 ~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~e--f~lA~~~~l~L~~~ad~l~~lv~~Yek~  220 (449)
T 1b89_A          143 LLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKE--FRLAQMCGLHIVVHADELEELINYYQDR  220 (449)
T ss_dssp             HHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTC--HHHHHHTTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCc--HHHHHHHHHHHHhCHhhHHHHHHHHHHC
Confidence            3456677888899999999999999999999954310      0000000  000000      0011122477889999


Q ss_pred             cCHHHHHHHHHHHhcccCCCcchhccccccc
Q 011003          462 KDYKQAEKLCTKKCESSVQKGSGIHSDGRFR  492 (496)
Q Consensus       462 ~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~  492 (496)
                      |+|.+|+..++++|.+++.+.-++...|.+|
T Consensus       221 G~~eEai~lLe~aL~le~ah~~~ftel~il~  251 (449)
T 1b89_A          221 GYFEELITMLEAALGLERAHMGMFTELAILY  251 (449)
T ss_dssp             TCHHHHHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            9999999999999999999888777766554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.22  E-value=0.052  Score=61.81  Aligned_cols=88  Identities=13%  Similarity=-0.039  Sum_probs=60.5

Q ss_pred             HHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCCh--HHHHHH-----HHHHHHhhhHHHHHHHhccCHHHHHHHHHHHh
Q 011003          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD--EEKKQA-----KALKVACNLNNAACKLKLKDYKQAEKLCTKKC  475 (496)
Q Consensus       403 k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~--~~~~~~-----~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  475 (496)
                      ++-|..+...|.|++|+..|+++-........+-+  ....+.     +-....+|+++|.+++++++|++|++.+.+| 
T Consensus      1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A         1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence            34588889999999999999998644221000000  001111     1233778999999999999999999999886 


Q ss_pred             cccCCCcchhcccccccccc
Q 011003          476 ESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       476 ~~dp~~~Ka~~rrg~a~~~l  495 (496)
                          ++..+|++.|.++..+
T Consensus      1132 ----dD~say~eVa~~~~~l 1147 (1630)
T 1xi4_A         1132 ----DDPSSYMEVVQAANTS 1147 (1630)
T ss_pred             ----CChHHHHHHHHHHHHc
Confidence                7778888887776543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.20  E-value=0.086  Score=60.09  Aligned_cols=18  Identities=22%  Similarity=0.375  Sum_probs=10.0

Q ss_pred             CcccEEEEcCccchhhHH
Q 011003          314 EEQLFEFKTDEEQVIDGL  331 (496)
Q Consensus       314 ~~~~~~~~lg~~~~~~gl  331 (496)
                      .++-+.+.+.+..++|-+
T Consensus       321 ~G~vl~v~v~~~~iv~yi  338 (1630)
T 1xi4_A          321 KGQVLSVCVEEENIIPYI  338 (1630)
T ss_pred             CceEEEEEEccchhhhhH
Confidence            445555666665555544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=92.97  E-value=0.053  Score=41.91  Aligned_cols=47  Identities=9%  Similarity=-0.050  Sum_probs=40.1

Q ss_pred             HHhhhHHHHHHHhccC---HHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003          448 VACNLNNAACKLKLKD---YKQAEKLCTKKCESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       448 ~~~~~N~a~~~~kl~~---~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~  494 (496)
                      ..++..+|.+++-.++   ..+|...+.+||++||+|++|++-.|.+++.
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~   55 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI   55 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH
Confidence            5567788888876665   7999999999999999999999999877654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=92.50  E-value=0.18  Score=51.43  Aligned_cols=91  Identities=18%  Similarity=0.102  Sum_probs=51.4

Q ss_pred             hhHHhhhhhHh----cccHHHHHHHHHHHhhhhc------------cCC--CCChHHH-----HHHHHHHHHhhhHHHHH
Q 011003          401 KKKEQGNTLFK----AGKYARASKRYEKAVKYIE------------YDT--SFGDEEK-----KQAKALKVACNLNNAAC  457 (496)
Q Consensus       401 ~~k~~Gn~~fk----~~~y~~A~~~Y~~al~~~~------------~~~--~~~~~~~-----~~~~~~~~~~~~N~a~~  457 (496)
                      .....|..++.    .+++.+|+..|++|++.-.            ...  ..+.+.-     .....-....+.|++.+
T Consensus        41 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~  120 (490)
T 2xm6_A           41 AQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVM  120 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            34445666666    7888888888888876410            000  0000000     01111224456677777


Q ss_pred             HHh----ccCHHHHHHHHHHHhcccCCCcchhcccccccc
Q 011003          458 KLK----LKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRF  493 (496)
Q Consensus       458 ~~k----l~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~  493 (496)
                      |..    .+++.+|+..+.++++.  +++.|++..|.+|.
T Consensus       121 y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~  158 (490)
T 2xm6_A          121 YHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYF  158 (490)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            777    67777777777777654  46677777766654

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=92.28  E-value=0.28  Score=39.54  Aligned_cols=69  Identities=23%  Similarity=0.277  Sum_probs=46.3

Q ss_pred             ccChH-HHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCC--ChHHHHHHHHHHHHhhhHHHHH
Q 011003          389 DMNTE-EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF--GDEEKKQAKALKVACNLNNAAC  457 (496)
Q Consensus       389 ~~~~~-e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~--~~~~~~~~~~~~~~~~~N~a~~  457 (496)
                      .|+.. +.++.|..+-.+|...=+.++|.+|+.+|..|+++|......  .+......-..++.-|++||..
T Consensus         7 ~m~~~~~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl~RAE~   78 (117)
T 2cpt_A            7 GMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEK   78 (117)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH
Confidence            45545 678888888899999999999999999999999987543211  1222233333344445555543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=91.95  E-value=0.11  Score=52.57  Aligned_cols=61  Identities=15%  Similarity=-0.010  Sum_probs=34.5

Q ss_pred             hcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhcc-----CHHHHHHHHHHHhcccCCCcchh
Q 011003          411 KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-----DYKQAEKLCTKKCESSVQKGSGI  485 (496)
Q Consensus       411 k~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~-----~~~~Ai~~~~~al~~dp~~~Ka~  485 (496)
                      ..+++.+|+..|++|++.-                 ...++.|++.+|. .|     ++.+|+..+.+|+   +.++.|+
T Consensus       263 ~~~d~~~A~~~~~~Aa~~g-----------------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~  321 (452)
T 3e4b_A          263 ELGDVEQMMKYLDNGRAAD-----------------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAAD  321 (452)
T ss_dssp             GGCCHHHHHHHHHHHHHTT-----------------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCC-----------------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHH
Confidence            4677888888888877541                 1334455555555 22     5555555555555   4555555


Q ss_pred             ccccccc
Q 011003          486 HSDGRFR  492 (496)
Q Consensus       486 ~rrg~a~  492 (496)
                      |+.|.+|
T Consensus       322 ~~Lg~~y  328 (452)
T 3e4b_A          322 YYLGQIY  328 (452)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555443

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=91.17  E-value=0.31  Score=36.82  Aligned_cols=42  Identities=19%  Similarity=0.246  Sum_probs=34.3

Q ss_pred             cChHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhcc
Q 011003          390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (496)
Q Consensus       390 ~~~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~  431 (496)
                      |+..+.+..|..+-.+|...=+.|+|.+|+.+|..|+.+|..
T Consensus         4 m~~~~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~   45 (85)
T 2v6x_A            4 MSTGDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLML   45 (85)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            333345677888888888999999999999999999998743

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=91.13  E-value=0.32  Score=52.37  Aligned_cols=59  Identities=20%  Similarity=0.180  Sum_probs=52.1

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHH
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKK  474 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a  474 (496)
                      -+-.++..+..+++|+.|+..-++|+.+.+..               -.+|.+||.||.++++|+.|+-..+-+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPse---------------F~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDS---------------FESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchh---------------hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            35567778889999999999999999997665               788999999999999999999888776

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=90.92  E-value=0.16  Score=48.69  Aligned_cols=61  Identities=11%  Similarity=-0.011  Sum_probs=47.1

Q ss_pred             ccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc----------cCCCc
Q 011003          413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES----------SVQKG  482 (496)
Q Consensus       413 ~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~----------dp~~~  482 (496)
                      +++++|+..|+++....+..             ....++.|   |++++|+|.+|....+.++++          +|+|+
T Consensus       192 ~~~q~A~~~f~El~~~~p~~-------------~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~  255 (310)
T 3mv2_B          192 ETATSNFYYYEELSQTFPTW-------------KTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKP  255 (310)
T ss_dssp             STTTHHHHHHHHHHTTSCSH-------------HHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHH
T ss_pred             ccHHHHHHHHHHHHHhCCCc-------------ccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCH
Confidence            38999999999987653320             12345566   899999999999999988887          58898


Q ss_pred             chhcccc
Q 011003          483 SGIHSDG  489 (496)
Q Consensus       483 Ka~~rrg  489 (496)
                      .++..+.
T Consensus       256 ~~LaN~i  262 (310)
T 3mv2_B          256 TFLANQI  262 (310)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8886663

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=90.86  E-value=0.29  Score=36.79  Aligned_cols=43  Identities=23%  Similarity=0.200  Sum_probs=36.1

Q ss_pred             ccChH-HHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhcc
Q 011003          389 DMNTE-EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (496)
Q Consensus       389 ~~~~~-e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~  431 (496)
                      -|++. ..++.|..+-.+|...=+.|+|.+|+.+|.+|+++|..
T Consensus         8 ~~~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~   51 (83)
T 2w2u_A            8 HMSAQVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQ   51 (83)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            45554 45688899999999999999999999999999998743

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=90.66  E-value=0.31  Score=47.66  Aligned_cols=62  Identities=5%  Similarity=-0.099  Sum_probs=51.3

Q ss_pred             hhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCc
Q 011003          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKG  482 (496)
Q Consensus       405 ~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~  482 (496)
                      .+..++.+|++++|+..+++|+.+-               +. ...|.-++.++.-.|++.+|++.+++|+.++|...
T Consensus       283 lal~~l~~gd~d~A~~~l~rAl~Ln---------------~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          283 KAVSALVKGKTDESYQAINTGIDLE---------------MS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC---------------CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcC---------------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            3445566899999999999999982               11 44566789999999999999999999999999764

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=90.42  E-value=0.63  Score=35.79  Aligned_cols=65  Identities=14%  Similarity=0.108  Sum_probs=43.6

Q ss_pred             HHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCC-CChHHHHHHHHHHHHhhhHHHHHH
Q 011003          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-FGDEEKKQAKALKVACNLNNAACK  458 (496)
Q Consensus       394 e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~N~a~~~  458 (496)
                      ..++.|..+-.+|..+=+.++|.+|+.+|..|+.+|..... ..++.....-..++.-|++||...
T Consensus        10 ~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~RAE~L   75 (93)
T 1wfd_A           10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENI   75 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            34567788888899999999999999999999998754311 122233333344455566666443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=90.08  E-value=0.037  Score=47.01  Aligned_cols=68  Identities=9%  Similarity=0.092  Sum_probs=52.4

Q ss_pred             ccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhcc---CHHHHHHHHHHHhccc-C-CCcchhcc
Q 011003          413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK---DYKQAEKLCTKKCESS-V-QKGSGIHS  487 (496)
Q Consensus       413 ~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~---~~~~Ai~~~~~al~~d-p-~~~Ka~~r  487 (496)
                      .....+.+.|.+++..               ......+..|.|.|+.+.+   +.++++..++.+++.+ | ++.+++|.
T Consensus        12 ~~l~~~~~~y~~e~~~---------------~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~   76 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAA---------------GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFY   76 (152)
T ss_dssp             HHHHHHHHHHHHHHHT---------------TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcc---------------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHH
Confidence            3455666777777653               1123677889999999988   6789999999999999 7 67899999


Q ss_pred             cccccccc
Q 011003          488 DGRFRFGR  495 (496)
Q Consensus       488 rg~a~~~l  495 (496)
                      .|.+++.+
T Consensus        77 LAv~~~kl   84 (152)
T 1pc2_A           77 LAVGNYRL   84 (152)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            99887643

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=89.83  E-value=0.74  Score=34.81  Aligned_cols=60  Identities=17%  Similarity=0.174  Sum_probs=38.3

Q ss_pred             HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCC-CChHHHHHHHHHHHHhhhHHHH
Q 011003          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-FGDEEKKQAKALKVACNLNNAA  456 (496)
Q Consensus       397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~N~a~  456 (496)
                      ..+..+-.++..+=+.|+|.+|+.+|..|+++|..... ..++.....-..++.-|.+||.
T Consensus        14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr~K~~eYl~RAE   74 (86)
T 4a5x_A           14 TAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAE   74 (86)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHH
Confidence            34566777888888999999999999999998753211 1122223323334444556654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=89.40  E-value=0.32  Score=45.87  Aligned_cols=47  Identities=4%  Similarity=-0.224  Sum_probs=40.7

Q ss_pred             HHHhhhHHHHHHHhc-----cCHHHHHHHHHHHhcccCCC-cchhcccccccc
Q 011003          447 KVACNLNNAACKLKL-----KDYKQAEKLCTKKCESSVQK-GSGIHSDGRFRF  493 (496)
Q Consensus       447 ~~~~~~N~a~~~~kl-----~~~~~Ai~~~~~al~~dp~~-~Ka~~rrg~a~~  493 (496)
                      .-.+|.-++..|.++     |+.++|..++++||+++|+. +.++|..|..+.
T Consensus       198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~  250 (301)
T 3u64_A          198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALC  250 (301)
T ss_dssp             HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence            466888999999996     99999999999999999975 888888776654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=87.96  E-value=0.22  Score=47.67  Aligned_cols=63  Identities=8%  Similarity=-0.043  Sum_probs=52.2

Q ss_pred             HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp  479 (496)
                      --|..++..|++++|++.+.++|..-+.             .....++.-++.+++++++...|.+.+.+..+.+|
T Consensus       105 ~la~i~~~~g~~eeAL~~l~~~i~~~~~-------------~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~  167 (310)
T 3mv2_B          105 LLATAQAILGDLDKSLETCVEGIDNDEA-------------EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE  167 (310)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHTSSCS-------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHhccCCC-------------cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence            5677788899999999999999765210             13366777889999999999999999999999988

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=86.58  E-value=4.4  Score=38.51  Aligned_cols=83  Identities=22%  Similarity=0.187  Sum_probs=52.8

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHH-----------------------------HHHH-
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAK-----------------------------ALKV-  448 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~-----------------------------~~~~-  448 (496)
                      .......|-++|+.|+|.+|+..|...|..+.-..-.++++..++.                             .+.. 
T Consensus       114 L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELA  193 (325)
T 3mv2_A          114 VNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELA  193 (325)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence            3334558999999999999999999999876422111111111110                             0111 


Q ss_pred             -------------HhhhHHH-HHHHhccCHHHHHHHHHHHhcccCCC
Q 011003          449 -------------ACNLNNA-ACKLKLKDYKQAEKLCTKKCESSVQK  481 (496)
Q Consensus       449 -------------~~~~N~a-~~~~kl~~~~~Ai~~~~~al~~dp~~  481 (496)
                                   .+-++.| ...+|.+||.-|-..|++.|++.|+.
T Consensus       194 AYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~  240 (325)
T 3mv2_A          194 AYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG  240 (325)
T ss_dssp             HHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS
T ss_pred             HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH
Confidence                         1111222 23568999999999999999999854

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=86.23  E-value=1.9  Score=32.55  Aligned_cols=42  Identities=24%  Similarity=0.400  Sum_probs=33.9

Q ss_pred             HHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCCh
Q 011003          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD  437 (496)
Q Consensus       396 ~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~  437 (496)
                      +..|-..-.++..+.+.|+|++||.++.+|..+|....+..+
T Consensus        12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmkltq   53 (97)
T 2crb_A           12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLTE   53 (97)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence            445666677889999999999999999999999876544443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=84.63  E-value=0.47  Score=44.73  Aligned_cols=64  Identities=9%  Similarity=0.078  Sum_probs=50.1

Q ss_pred             hHHhhhhhHh-----cccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHH-HHhhhHHHHHHHh-ccCHHHHHHHHHHH
Q 011003          402 KKEQGNTLFK-----AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALK-VACNLNNAACKLK-LKDYKQAEKLCTKK  474 (496)
Q Consensus       402 ~k~~Gn~~fk-----~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~-~~~~~N~a~~~~k-l~~~~~Ai~~~~~a  474 (496)
                      +.-.|.-+++     -|+.++|.++|++||++-+               .. +..+...|..++. ++++.+|...+++|
T Consensus       202 ~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP---------------~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA  266 (301)
T 3u64_A          202 WNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCS---------------AHDPDHHITYADALCIPLNNRAGFDEALDRA  266 (301)
T ss_dssp             HHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCC---------------TTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCC---------------CCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            3344555555     3999999999999999833               22 5566777888877 59999999999999


Q ss_pred             hcccCC
Q 011003          475 CESSVQ  480 (496)
Q Consensus       475 l~~dp~  480 (496)
                      |..+|+
T Consensus       267 L~a~p~  272 (301)
T 3u64_A          267 LAIDPE  272 (301)
T ss_dssp             HHCCGG
T ss_pred             HcCCCC
Confidence            999886

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=82.89  E-value=0.47  Score=36.99  Aligned_cols=47  Identities=11%  Similarity=0.014  Sum_probs=36.3

Q ss_pred             HhhhHHHHHHHhccCHHHHHHHHHHHhccc-------CCCcchhcccccccccc
Q 011003          449 ACNLNNAACKLKLKDYKQAEKLCTKKCESS-------VQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       449 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d-------p~~~Ka~~rrg~a~~~l  495 (496)
                      .-+..++..+++.++|..|+..+.+|++..       +.+...++..|.+++.+
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~   59 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQ   59 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHc
Confidence            446789999999999999999999999864       23455666666666543

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=82.47  E-value=9.4  Score=36.21  Aligned_cols=30  Identities=13%  Similarity=0.297  Sum_probs=25.9

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhc
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIE  430 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~  430 (496)
                      .....|-++|..|+|.+|+..|...|..+.
T Consensus       104 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~  133 (320)
T 3mkr_B          104 QRLQLCYQLTTVGKFEEAVEKFRSILLSVP  133 (320)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence            345789999999999999999999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	496
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	1e-35
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	3e-19
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	4e-18
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	6e-32
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	5e-18
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	5e-15
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	1e-31
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	3e-19
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	3e-17
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	1e-30
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	8e-22
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	2e-19
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	4e-29
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	6e-14
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	1e-13
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	1e-28
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	2e-15
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	3e-12
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	1e-28
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	3e-18
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	3e-14
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	1e-26
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	1e-20
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	1e-15
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	1e-25
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	2e-12
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	5e-10
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	2e-24
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	4e-12
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	2e-09
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	2e-22
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	9e-12
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	1e-07
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	2e-22
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	1e-10
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	4e-10
d1ix5a_	151	d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu	1e-17
d1ix5a_	151	d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu	7e-05
d1ix5a_	151	d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu	8e-04
d1hxva_	85	d.26.1.1 (A:) Trigger factor PPIase domain {Mycopl	7e-17
d1hxva_	85	d.26.1.1 (A:) Trigger factor PPIase domain {Mycopl	4e-06
d1hxva_	85	d.26.1.1 (A:) Trigger factor PPIase domain {Mycopl	2e-04
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	5e-15
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	1e-13
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	1e-13
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	8e-05
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	2e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-04
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	0.002
d1l1pa_	106	d.26.1.1 (A:) Trigger factor PPIase domain {Escher	0.004

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  126 bits (317), Expect = 1e-35
 Identities = 62/111 (55%), Positives = 78/111 (70%)

Query: 35  GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIK 94
            + G+ K + KEG+G   P  G  V+VHY GTL +GT+FDSSRDR   F F LG+GNVIK
Sbjct: 8   KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIK 67

Query: 95  GWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTS 145
           GWD+G+ TM KGE A FTI  +  YG++GSPP IP  ATL F+VEL  W++
Sbjct: 68  GWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEWSA 118

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 81.3 bits (200), Expect = 3e-19
 Identities = 43/113 (38%), Positives = 56/113 (49%), Gaps = 5/113 (4%)

Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D  V+K I KEG G  +P  G  VKV  +G L++GT F      +    F F      VI
Sbjct: 9   DGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSS--RDRGDQFSFNLGRGNVI 66

Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            G D  V TM K EVA  TI  +Y +G A S      +P  +T+ +EVEL  +
Sbjct: 67  KGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPP---KIPGGATLIFEVELFEW 116

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 77.8 bits (191), Expect = 4e-18
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 9/115 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVK----DGHFCP 206
           KDGG++K I KEG+    P     V V+Y   LE+G     +             G+   
Sbjct: 8   KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIK 67

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
                V TM KGE     ++  YG+G+      G+   +P  ATL   +EL  W 
Sbjct: 68  GWDLGVATMTKGEVAEFTIRSDYGYGDA-----GSPPKIPGGATLIFEVELFEWS 117

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score =  116 bits (291), Expect = 6e-32
 Identities = 58/108 (53%), Positives = 74/108 (68%)

Query: 36  NQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKG 95
           ++G+ K + + G G +TP  GD V VHY G L +G +FDSS DR+ PF F++G+G VIK 
Sbjct: 3   DRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKA 62

Query: 96  WDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
           WDIG+ TMKKGE       PE AYG +GS P IP NATL F+VELL +
Sbjct: 63  WDIGVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDF 110

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 77.5 bits (190), Expect = 5e-18
 Identities = 42/115 (36%), Positives = 59/115 (51%), Gaps = 5/115 (4%)

Query: 268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQV 327
            D+ V+K + + G G E P  G  V V   GKL +G  F      +  + F F   + QV
Sbjct: 2   KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSS--HDRNEPFVFSIGKGQV 59

Query: 328 IDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           I   D  V TMKK E+  L   PEYA+G+  S      +P N+T+ +EVEL+ F+
Sbjct: 60  IKAWDIGVATMKKGEICHLLCKPEYAYGATGSLP---KIPSNATLFFEVELLDFK 111

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 69.0 bits (168), Expect = 5e-15
 Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 9/115 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCP 206
           KD G++K + + G   E P   D V V+Y  +L +G        + +   F++  G    
Sbjct: 2   KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIK 61

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
                V TMKKGE   L  KP+Y +G  G         +P NATL   +EL+ +K
Sbjct: 62  AWDIGVATMKKGEICHLLCKPEYAYGATGS-----LPKIPSNATLFFEVELLDFK 111

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (290), Expect = 1e-31
 Identities = 63/109 (57%), Positives = 74/109 (67%)

Query: 35  GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIK 94
            ++G+ K + +EG G + P  GD V VHYTG LLDGT+FDSS DR   F F LG+G VIK
Sbjct: 9   QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 68

Query: 95  GWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
            WDI I TMK GE    T  PE AYG +GSPP IPPNATL F+VEL  +
Sbjct: 69  AWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 117

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.9 bits (199), Expect = 3e-19
 Identities = 48/116 (41%), Positives = 63/116 (54%), Gaps = 5/116 (4%)

Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K I +EG G E P  G  V V   G L DGT F      + +  F F   + +VI
Sbjct: 10  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDS--SLDRKDKFSFDLGKGEVI 67

Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D A+ TMK  EV  +T  PEYA+GSA S      +PPN+T+ +EVEL  F+ E
Sbjct: 68  KAWDIAIATMKVGEVCHITCKPEYAYGSAGSP---PKIPPNATLVFEVELFEFKGE 120

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.5 bits (185), Expect = 3e-17
 Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 9/115 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVK----DGHFCP 206
           +D G++K I +EG   E P   D V V+Y   L DG     +   +         G    
Sbjct: 9   QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 68

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
               A+ TMK GE   +  KP+Y +G       G+   +PPNATL   +EL  +K
Sbjct: 69  AWDIAIATMKVGEVCHITCKPEYAYGSA-----GSPPKIPPNATLVFEVELFEFK 118

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score =  112 bits (282), Expect = 1e-30
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 31  EKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQG 90
           E  + + G+ ++  + GEG+  P  G  V++H  G    G  FD      T  +      
Sbjct: 2   EDLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGR-CGGRVFDCRDVAFTVGEGEDHD- 59

Query: 91  NVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPP-TIPPNATLQFDVELLSW 143
            +  G D  ++ M++ E  +  + P   +GE+G P   I PNA L ++V L S+
Sbjct: 60  -IPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSF 112

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 88.2 bits (218), Expect = 8e-22
 Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 7/119 (5%)

Query: 265 EITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE 324
           ++ +D  +I++  + G+G+  PNEGA V++ L G+        +     +      + ++
Sbjct: 3   DLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRCGG-----RVFDCRDVAFTVGEGED 57

Query: 325 EQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383
             +  G+D+A+  M++ E  +L + P Y FG  E+ +    + PN+ + YEV L SFEK
Sbjct: 58  HDIPIGIDKALEKMQREEQCILHLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSFEK 114

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 81.6 bits (201), Expect = 2e-19
 Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 5/116 (4%)

Query: 147 KDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKAD-GVEFTVKDGHFC 205
           +D+ +DGGII++  + GE + NP +   V ++ E R    +   +         +D    
Sbjct: 2   EDLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRCGGRVFDCRDVAFTVGEGEDHDIP 61

Query: 206 PTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
             + KA++ M++ E+ +L + P+YGFGE GK     +  + PNA L   + L S++
Sbjct: 62  IGIDKALEKMQREEQCILHLGPRYGFGEAGKP----KFGIEPNAELIYEVTLKSFE 113

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  108 bits (271), Expect = 4e-29
 Identities = 56/110 (50%), Positives = 70/110 (63%)

Query: 33  EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNV 92
           E+    +K   +  G+G   P+ GD V +HYTGTL +G +FDSS DR +PF+  +G G V
Sbjct: 2   EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQV 61

Query: 93  IKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
           IKGWD+GI  +  GE A  TIP   AYG  G P  IPPN+TL FDVELL 
Sbjct: 62  IKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLK 111

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.9 bits (160), Expect = 6e-14
 Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 9/112 (8%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGV----EFTVKDGHFCPT 207
           +G +    +  G+    PK  D V ++Y   LE+G     +       +  +  G     
Sbjct: 5   EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKG 64

Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
               +  +  GEK  L +   Y +G +G       G +PPN+TL   +EL+ 
Sbjct: 65  WDVGIPKLSVGEKARLTIPGPYAYGPRGFP-----GLIPPNSTLVFDVELLK 111

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.2 bits (158), Expect = 1e-13
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 6/117 (5%)

Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
           SE+ +   V    +  GDG   P  G +V +   G L++G  F      +    F+    
Sbjct: 1   SEVIEGN-VKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSS--VDRGSPFQCNIG 57

Query: 324 EEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
             QVI G D  +  +   E A LTI   YA+G         ++PPNST+ ++VEL+ 
Sbjct: 58  VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFP---GLIPPNSTLVFDVELLK 111

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (267), Expect = 1e-28
 Identities = 54/106 (50%), Positives = 70/106 (66%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           G++ + +  G+G   P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
            G+  M  G+ A  TI P+ AYG +G P  IPP+ATL FDVELL  
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (170), Expect = 2e-15
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 5/111 (4%)

Query: 272 VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGL 331
           V  + +  GDG   P  G    V   G L+DG  F         + F+F   +++VI G 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRD--RNKPFKFMLGKQEVIRGW 59

Query: 332 DRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           +  V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 60  EEGVAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (147), Expect = 3e-12
 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 9/112 (8%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLA 209
           G+  + +  G+    PK     +V+Y   LEDG     +       +F +          
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
           + V  M  G++  L + P Y +G       G+ G +PP+ATL   +EL+  +
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGAT-----GHPGIIPPHATLVFDVELLKLE 107

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (268), Expect = 1e-28
 Identities = 50/113 (44%), Positives = 65/113 (57%), Gaps = 8/113 (7%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRD-------RSTPFKFTLGQG 90
              K ++K+G+  + P+ GD V   YTGTL DGT FD++          + P  F +G G
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVG 61

Query: 91  NVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSP-PTIPPNATLQFDVELLS 142
            VI+GWD  + TM KGE A   I PE AYG+ G P   IPPNA L F+VEL+ 
Sbjct: 62  KVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVD 114

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.3 bits (192), Expect = 3e-18
 Identities = 45/117 (38%), Positives = 61/117 (52%), Gaps = 7/117 (5%)

Query: 271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEE-----QLFEFKTDEE 325
           K  K +LK+GD    P +G VV     G LQDGTVF     +  +     +   FK    
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVG 61

Query: 326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           +VI G D A++TM K E A L I PE+A+G        A +PPN+ + +EVELV  +
Sbjct: 62  KVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPD--AKIPPNAKLTFEVELVDID 116

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (163), Expect = 3e-14
 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 15/117 (12%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDG-----------MVVGKADGVEFTVKDG 202
              K +LK+G+K   PK  D V   Y   L+DG                A  + F V  G
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVG 61

Query: 203 HFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
                  +A+ TM KGEK  L ++P++ +G+KG+     +  +PPNA L   +ELV 
Sbjct: 62  KVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQP----DAKIPPNAKLTFEVELVD 114

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 1e-26
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 4/117 (3%)

Query: 33  EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNV 92
           E  + G+ +++   GEG+  P  G  VEV   G   D                     ++
Sbjct: 4   EEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRF---EIGEGENLDL 60

Query: 93  IKGWDIGIKTMKKGENAVFTIPPELAYGESGSPP-TIPPNATLQFDVELLSWTSVKD 148
             G +  I+ M+KGE+++  + P  A+G  G     IPPNA L++++ L S+   K+
Sbjct: 61  PYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKE 117

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.2 bits (210), Expect = 1e-20
 Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 7/120 (5%)

Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
            +D  +I++I   G+G+ +PNEGA+V+V L G  +D     ++   E  +          
Sbjct: 5   EEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENL-----D 59

Query: 327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
           +  GL+RA+  M+K E +++ + P YAFG     +E   +PPN+ + YE+ L SFEK KE
Sbjct: 60  LPYGLERAIQRMEKGEHSIVYLKPSYAFG--SVGKEKFQIPPNAELKYELHLKSFEKAKE 117

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.9 bits (173), Expect = 1e-15
 Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 5/116 (4%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDG-MVVGKADGVEFTVKDGHFCPTLA 209
           +DGGII++I   GE +  P +   V V  E   +D      +        ++      L 
Sbjct: 6   EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDLPYGLE 65

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSE 265
           +A++ M+KGE  ++ +KP Y FG  GK     +  +PPNA L+  L L S++   E
Sbjct: 66  RAIQRMEKGEHSIVYLKPSYAFGSVGKE----KFQIPPNAELKYELHLKSFEKAKE 117

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score =  102 bits (254), Expect = 1e-25
 Identities = 53/108 (49%), Positives = 70/108 (64%), Gaps = 4/108 (3%)

Query: 36  NQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKG 95
           + GL  ++V+ G+G + P++ D V V+Y GTL+DG +FD+S  R  P  F L    VI G
Sbjct: 106 STGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIPG 162

Query: 96  WDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
           W  G+K +KKG      IPPELAYG++G P  IPPN+TL FDVELL  
Sbjct: 163 WTEGLKNIKKGGKIKLVIPPELAYGKAGVPG-IPPNSTLVFDVELLDV 209

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 64.1 bits (155), Expect = 2e-12
 Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 9/122 (7%)

Query: 261 KTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEF 320
           K     T    ++ ++++ G G E P +   V V   G L DG  F       E      
Sbjct: 98  KEKGVKTSSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEP----L 152

Query: 321 KTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
               + VI G    +  +KK     L I PE A+G A        +PPNST+ ++VEL+ 
Sbjct: 153 SFRLDGVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVPG----IPPNSTLVFDVELLD 208

Query: 381 FE 382
            +
Sbjct: 209 VK 210

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 57.2 bits (137), Expect = 5e-10
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 8/97 (8%)

Query: 167 ENPKDLDEVLVNYEARLEDGMVVGKAD--GVEFTVKDGHFCPTLAKAVKTMKKGEKVLLA 224
           E PKD D V+VNY+  L DG     +   G   + +     P   + +K +KKG K+ L 
Sbjct: 120 EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGLKNIKKGGKIKLV 179

Query: 225 VKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
           + P+  +G+ G         +PPN+TL   +EL+  K
Sbjct: 180 IPPELAYGKAGV------PGIPPNSTLVFDVELLDVK 210

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 98.4 bits (244), Expect = 2e-24
 Identities = 40/108 (37%), Positives = 50/108 (46%), Gaps = 3/108 (2%)

Query: 36  NQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKG 95
             GL+ K++  G G   P   D V V YTG L+DGT FDS+     P  F      VI G
Sbjct: 97  PSGLQYKVINSGNGV-KPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATF--QVSQVIPG 153

Query: 96  WDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
           W   ++ M  G      +P  LAYG       I PN TL F + L+S 
Sbjct: 154 WTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISV 201

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 63.3 bits (153), Expect = 4e-12
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 8/118 (6%)

Query: 266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEE 325
           +     +  K++  G+G  +P +   V V+  G+L DGTVF     S E+          
Sbjct: 94  VVLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVF----DSTEKTGKPATFQVS 148

Query: 326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383
           QVI G   A+  M       + +    A+G          + PN T+ +++ L+S +K
Sbjct: 149 QVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVG---GPIGPNETLIFKIHLISVKK 203

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 55.2 bits (132), Expect = 2e-09
 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 8/112 (7%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKAD--GVEFTVKDGHFCPTLA 209
             G+  K++  G   +  K  D V V Y  RL DG V    +  G   T +     P   
Sbjct: 97  PSGLQYKVINSGNGVKPGKS-DTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQVIPGWT 155

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
           +A++ M  G    + V     +G +        G + PN TL   + L+S K
Sbjct: 156 EALQLMPAGSTWEIYVPSGLAYGPRSVG-----GPIGPNETLIFKIHLISVK 202

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 91.4 bits (226), Expect = 2e-22
 Identities = 55/143 (38%), Positives = 74/143 (51%), Gaps = 19/143 (13%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL  + +  G G   P   D+ EVHYTG L DGT FDSSR+R  P  F      VIKGW 
Sbjct: 35  GLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTF--RPNEVIKGWT 92

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIK 157
             ++ M++G+     IP +LAYG +G    IPP + L+FDVEL+S               
Sbjct: 93  EALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISI-------------- 138

Query: 158 KILKEGEKWENPKDLDEVLVNYE 180
              K+G K    +++DE+L   E
Sbjct: 139 ---KDGGKGRTAEEVDEILRKAE 158

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 61.0 bits (147), Expect = 9e-12
 Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 10/140 (7%)

Query: 266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEE 325
           +     ++ + +  G G   P      +V   G+L+DGTVF     S  E+         
Sbjct: 30  VKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVF----DSSRERGKPTTFRPN 85

Query: 326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEK 385
           +VI G   A+  M++ +   L I  + A+G         ++PP S + ++VEL+S    K
Sbjct: 86  EVIKGWTEALQLMREGDRWRLFIPYDLAYGVTGGG---GMIPPYSPLEFDVELISI---K 139

Query: 386 ESWDMNTEEKIEAAGKKKEQ 405
           +     T E+++   +K E+
Sbjct: 140 DGGKGRTAEEVDEILRKAEE 159

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 49.4 bits (117), Expect = 1e-07
 Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 7/132 (5%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHF--CPTLA 209
             G++ + +  G     P   D+  V+Y  RL DG V   +                   
Sbjct: 33  PSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPNEVIKGWT 92

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDD 269
           +A++ M++G++  L +     +G  G       G +PP + L+  +EL+S K   +    
Sbjct: 93  EALQLMREGDRWRLFIPYDLAYGVTGGG-----GMIPPYSPLEFDVELISIKDGGKGRTA 147

Query: 270 KKVIKKILKEGD 281
           ++V + + K  +
Sbjct: 148 EEVDEILRKAEE 159

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 90.3 bits (223), Expect = 2e-22
 Identities = 45/115 (39%), Positives = 55/115 (47%), Gaps = 12/115 (10%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL       G G      G  ++ HY G L +G  FDSS +R  P  F +G G VIKGWD
Sbjct: 9   GLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWD 67

Query: 98  I------GIKTMKKGENAVFTIPPELAYGESGS-----PPTIPPNATLQFDVELL 141
                  GI  M  G      IPPELAYG+ G+        IPP + L FD+E +
Sbjct: 68  QGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 122

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 57.2 bits (137), Expect = 1e-10
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 7/111 (6%)

Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE----EQVIDG 330
                G G     +G ++K   +GKL++G VF    +  +   F     E          
Sbjct: 13  CDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGIL 71

Query: 331 LDRAVITMKKNEVALLTIAPEYAFGS--AESQQELAVVPPNSTVHYEVELV 379
               +  M       L I PE A+G   A  +    ++PP S + +++E +
Sbjct: 72  GSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 122

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 55.3 bits (132), Expect = 4e-10
 Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 11/115 (9%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVV--GKADGVEFTVKDGHF------- 204
           G+       G           +  +Y  +LE+G V       G   T + G         
Sbjct: 9   GLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWD 67

Query: 205 -CPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
                +  +  M  G K  L + P+  +G++G    G    +PP + L   +E +
Sbjct: 68  QGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 122

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

 Score = 77.6 bits (190), Expect = 1e-17
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 15/102 (14%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRD-------------RSTPFKFTLGQGNVIKGWDIGI 100
           + G +++V Y G L  G  FD+S +                P +F +G+G +I+G++  +
Sbjct: 3   DKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAV 62

Query: 101 KTMKKGENAVFTIPPELAYGE--SGSPPTIPPNATLQFDVEL 140
             M+ G+     IP E AYG         IP +A  + D E 
Sbjct: 63  LDMEVGDEKTVKIPAEKAYGNRNEMLIQKIPRDAFKEADFEP 104

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

 Score = 41.0 bits (95), Expect = 7e-05
 Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 12/103 (11%)

Query: 287 NEGAVVKVKLIGKLQDGTVF-----------VKKGHSEEEQLFEFKTDEEQVIDGLDRAV 335
           ++G  +KV  IGKL+ G VF                  E +  EF   E Q+I G + AV
Sbjct: 3   DKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAV 62

Query: 336 ITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
           + M+  +   + I  E A+G   ++  +  +P ++    + E 
Sbjct: 63  LDMEVGDEKTVKIPAEKAYG-NRNEMLIQKIPRDAFKEADFEP 104

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

 Score = 37.9 bits (87), Expect = 8e-04
 Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 23/124 (18%)

Query: 173 DEVLVNYEARLEDGMVV-----------------GKADGVEFTVKDGHFCPTLAKAVKTM 215
            ++ V+Y  +LE G V                   + + +EF V +G       +AV  M
Sbjct: 6   VKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDM 65

Query: 216 KKGEKVLLAVKPQYGFGEKGKSASGNEG-AVPPNATLQIALELVSWK-----TVSEITDD 269
           + G++  + +  +  +G + +             A  +    +V        T++E+TD+
Sbjct: 66  EVGDEKTVKIPAEKAYGNRNEMLIQKIPRDAFKEADFEPEEGMVILAEGIPATITEVTDN 125

Query: 270 KKVI 273
           +  +
Sbjct: 126 EVTL 129

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Length = 85

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

 Score = 73.1 bits (179), Expect = 7e-17
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
             NGD   + +TG + D  +  S+  ++       G  + IKG++ G+  MK  +     
Sbjct: 2   LANGDIAIIDFTGIV-DNKKLASASAQNYELTI--GSNSFIKGFETGLIAMKVNQKKTLA 58

Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLS 142
           +     Y           +  + F+V L +
Sbjct: 59  LTFPSDYHVKE-----LQSKPVTFEVVLKA 83

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Length = 85

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

 Score = 42.7 bits (100), Expect = 4e-06
 Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 13/95 (13%)

Query: 288 EGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT 347
            G +  +   G + D         S +             I G +  +I MK N+   L 
Sbjct: 4   NGDIAIIDFTGIV-DNKKL--ASASAQNYELTI--GSNSFIKGFETGLIAMKVNQKKTLA 58

Query: 348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           +     +   E          +  V +EV L + +
Sbjct: 59  LTFPSDYHVKE--------LQSKPVTFEVVLKAIK 85

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Length = 85

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

 Score = 37.7 bits (87), Expect = 2e-04
 Identities = 13/94 (13%), Positives = 31/94 (32%), Gaps = 11/94 (11%)

Query: 169 PKDLDEVLVNYEARLEDGMVVGK-ADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKP 227
             + D  ++++   +++  +    A   E T+    F       +  MK  +K  LA+  
Sbjct: 2   LANGDIAIIDFTGIVDNKKLASASAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTF 61

Query: 228 QYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
              +  K             +  +   + L + K
Sbjct: 62  PSDYHVKE----------LQSKPVTFEVVLKAIK 85

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 70.8 bits (172), Expect = 5e-15
 Identities = 37/91 (40%), Positives = 57/91 (62%)

Query: 385 KESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAK 444
           KESW+M+T+EK+E A   KE+G   FK GKY +A  +Y K V ++E +    ++E K ++
Sbjct: 1   KESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASE 60

Query: 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKKC 475
           +  +A  LN A C LKL++Y +A + C K  
Sbjct: 61  SFLLAAFLNLAMCYLKLREYTKAVECCDKAL 91

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 66.2 bits (160), Expect = 1e-13
 Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 384 EKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDE-EKKQ 442
           +K  +D   EEK+++A   KE+GN  FK  +   A  +Y++A+ +  +   + D+    +
Sbjct: 2   KKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK 61

Query: 443 AKALKVACNLNNAACKLKLKDYKQAEKLCTKKC 475
            K ++++CNLN A C  K KDY +A    +K  
Sbjct: 62  KKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 94

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.0 bits (162), Expect = 1e-13
 Identities = 34/71 (47%), Positives = 53/71 (74%)

Query: 387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKAL 446
           SW+MN+EEK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF +EE ++A+AL
Sbjct: 1   SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 60

Query: 447 KVACNLNNAAC 457
           ++A +LN A C
Sbjct: 61  RLASHLNLAMC 71

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 42.1 bits (97), Expect = 8e-05
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 360 QQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARAS 419
           + E+  VP   T+  EV L   E+   S  +  +E+ +      E+G      G  A A 
Sbjct: 1   KSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLL---YERGVLYDSLGLRALAR 57

Query: 420 KRYEKAVKY 428
             + +A+  
Sbjct: 58  NDFSQALAI 66

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 1/96 (1%)

Query: 381 FEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-TSFGDEE 439
           F ++ +    + ++ +  +   K  GNT FK+  +  A K+Y K ++Y+E    +  D +
Sbjct: 9   FPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDAD 68

Query: 440 KKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKC 475
             + + + ++C LN  ACKLK+ D++ A   C +  
Sbjct: 69  GAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 104

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 8/70 (11%), Positives = 22/70 (31%), Gaps = 15/70 (21%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
           E  +  ++AG +  A +   +  +          +E      L     L  ++   + + 
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWR----------QEPDNTGVL-----LLLSSIHFQCRR 48

Query: 464 YKQAEKLCTK 473
             ++    T 
Sbjct: 49  LDRSAHFSTL 58

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 3/83 (3%)

Query: 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLN 453
           +++  A            AG+Y  A+    +A   +E   +   EE          C+  
Sbjct: 4   KEVVGAYLALSDAQRQLVAGEYDEAAANCRRA---MEISHTMPPEEAFDHAGFDAFCHAG 60

Query: 454 NAACKLKLKDYKQAEKLCTKKCE 476
            A     L+ + +A     K   
Sbjct: 61  LAEALAGLRSFDEALHSADKALH 83

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]} Length = 106

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

 Score = 34.9 bits (80), Expect = 0.004
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 8/89 (8%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
           E  D V + +TG++ DG +F+  +  ++ F   +GQG +I G++ GIK  K GE     +
Sbjct: 16  EAEDRVTIDFTGSV-DGEEFEGGK--ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDV 72

Query: 114 PPELAYGESGSPPTIPPNATLQFDVELLS 142
                Y               +F + L  
Sbjct: 73  TFPEEY-----HAENLKGKAAKFAINLKK 96

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	496
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.94
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.93
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.93
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.93
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.93
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.92
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.92
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.91
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.91
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.9
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.9
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.9
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.89
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.89
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.87
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.87
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.86
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.86
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.85
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.85
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.83
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.83
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.79
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.77
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.75
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	99.73
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.53
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	99.47
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	99.46
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.44
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.44
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.33
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	99.28
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.09
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.98
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	98.95
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.85
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	98.83
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.81
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.75
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.71
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.62
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	98.53
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.49
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.46
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.46
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.43
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.41
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.39
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	98.38
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.36
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.36
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.35
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.34
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.3
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.24
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.23
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.22
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.16
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.09
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.07
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.9
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.71
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.69
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.68
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.6
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.59
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.51
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.3
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.18
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	97.0
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.97
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	96.76
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.74
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	96.3
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	95.59
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	94.84
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	93.9
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	93.31
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	90.39
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	89.74
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	87.01
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	86.81
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	84.77
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	84.46
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	84.13

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.94  E-value=1.1e-26  Score=191.35  Aligned_cols=110  Identities=56%  Similarity=1.009  Sum_probs=105.5

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEec
Q 011003           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (496)
Q Consensus        35 ~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip  114 (496)
                      +++||+|+++++|+|...|..||.|.+||++++.||++|++|++++.|+.|.+|.+++++||+++|.+|++|++++|+||
T Consensus         8 ~d~Gl~~~il~~G~G~~~p~~gd~V~v~y~~~l~dG~v~dss~~~~~p~~f~~g~~~vi~G~~~~l~~M~~Ge~~~~~ip   87 (118)
T d1r9ha_           8 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIR   87 (118)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred             CCCCEEEEEEECcCCCCCCCCCCEEEEEEEEEEcCCCEEEEccccceeeeeeccCcceeeeeeeeeeeecCCceEEEEEC
Confidence            56899999999999977899999999999999999999999998889999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCceEEEEEEEEEe
Q 011003          115 PELAYGESGSPPTIPPNATLQFDVELLSWT  144 (496)
Q Consensus       115 ~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~  144 (496)
                      |++|||..+.++.||++++|+|+|+|++|.
T Consensus        88 p~laYG~~g~~~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          88 SDYGYGDAGSPPKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             HHHhCCcCCCCCccCcCCcEEEEEEEEEEe
Confidence            999999999887899999999999999985

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.7e-26  Score=187.59  Aligned_cols=111  Identities=57%  Similarity=0.936  Sum_probs=105.8

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEec
Q 011003           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (496)
Q Consensus        35 ~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip  114 (496)
                      .++||+|+++++|+|...|..||.|.+||++++.||++|++|+++++|+.|.+|.+++++||+++|.+|++|++++|+||
T Consensus         9 ~d~gv~~~i~~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~p~~f~~g~~~~i~G~~~~l~~M~~Ge~~~~~ip   88 (120)
T d1q1ca1           9 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCK   88 (120)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCCEEEEEEEcccCCcCCCCCCEEEEEEEEEEcCCCEEEeccccccceeeecCCCceeeeeeeeeccccCCcEEEEEEC
Confidence            45899999999999977799999999999999999999999999889999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCceEEEEEEEEEee
Q 011003          115 PELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (496)
Q Consensus       115 ~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~  145 (496)
                      |++|||..+.++.||++++|+|+|+|++++.
T Consensus        89 ~~laYG~~g~~~~IPp~s~LifeIeLl~v~~  119 (120)
T d1q1ca1          89 PEYAYGSAGSPPKIPPNATLVFEVELFEFKG  119 (120)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             HHHhCCCcCCCCCCCcCCcEEEEEEEEEEeC
Confidence            9999999998889999999999999999863

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.5e-26  Score=183.42  Aligned_cols=107  Identities=50%  Similarity=0.934  Sum_probs=102.1

Q ss_pred             CeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCc
Q 011003           38 GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL  117 (496)
Q Consensus        38 g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~  117 (496)
                      ||+|+++++|+|...|+.||.|.+||++++.||++|++|++++.|+.|.+|.+++++||+++|.+|++|++++|+|||++
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~y~g~l~dG~~~d~s~~~~~p~~~~~g~~~~i~G~~~~l~~M~~Ge~~~~~ip~~l   80 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY   80 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEEEEEEecCCeEEEeeeccceeeeEeeCcchhheeehhhhcCccCCCEEEEEECHHH
Confidence            79999999999966689999999999999999999999988889999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCceEEEEEEEEEe
Q 011003          118 AYGESGSPPTIPPNATLQFDVELLSWT  144 (496)
Q Consensus       118 ayg~~~~~~~ip~~~~l~~~v~l~~~~  144 (496)
                      |||..+.++.||+|++|+|+|+|++++
T Consensus        81 aYG~~g~~~~IPp~s~lif~ieL~~vk  107 (107)
T d2ppna1          81 AYGATGHPGIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             TTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             hCCCCCCCCCCCcCCeEEEEEEEEEEC
Confidence            999999877899999999999999874

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.9e-25  Score=182.97  Aligned_cols=110  Identities=50%  Similarity=0.861  Sum_probs=105.2

Q ss_pred             ecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEe
Q 011003           34 IGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI  113 (496)
Q Consensus        34 ~~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~i  113 (496)
                      +.++||+++++++|+|...|+.||.|.+||++++.||++|+++++...|+.|.++.+++++||++||.+|++|++++|+|
T Consensus         3 ~~d~gl~~~~l~~G~G~~~P~~gd~V~v~y~~~~~dG~~~ds~~~~~~~~~~~~~~~~~i~G~~~~l~~M~~G~~~~~~i   82 (113)
T d1yata_           3 VIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTI   82 (113)
T ss_dssp             ECGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEE
T ss_pred             CccCCcEEEEEECccCCcCCCCCCEEEEEEEEEEecCcEEeccccCCceEeeeeccCceeeehhhhcccccCCCEEEEEe
Confidence            46899999999999996668999999999999999999999999888999999999999999999999999999999999


Q ss_pred             cCCcccCCCCCCCCCCCCCceEEEEEEEEE
Q 011003          114 PPELAYGESGSPPTIPPNATLQFDVELLSW  143 (496)
Q Consensus       114 p~~~ayg~~~~~~~ip~~~~l~~~v~l~~~  143 (496)
                      ||++|||..+.++.||++++|+|+|+|+++
T Consensus        83 P~~laYG~~g~~~~IP~~s~Lif~ieLl~I  112 (113)
T d1yata_          83 PGPYAYGPRGFPGLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             CGGGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             chHHeecCcCCCCccCcCCeEEEEEEEEEe
Confidence            999999999988789999999999999987

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.93  E-value=2.2e-26  Score=187.73  Aligned_cols=110  Identities=53%  Similarity=0.911  Sum_probs=85.9

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEec
Q 011003           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (496)
Q Consensus        35 ~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip  114 (496)
                      +++||+|+++++|+|...|..||.|.+||++++.||++|++|+++++|+.|.+|.+++++||+++|.+|++|++++|+||
T Consensus         2 ~d~Gi~~~i~~~G~g~~~P~~gd~V~v~y~~~l~dG~~~dss~~~~~p~~f~lg~~~~i~G~~~~l~~M~~Ge~~~~~ip   81 (111)
T d1kt1a2           2 KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICHLLCK   81 (111)
T ss_dssp             CSCSCEEEC----CCSCCCCTTCEEEEECCCCSCC------------CEEEETTSSSSCHHHHHSTTTCCTTCCEEEEC-
T ss_pred             CCCCeEEEEEEcccCCcCCCCCCEEEEEEEEEECCCCEEEEEEecceeeeeecCCCcEEeeeeeeehhccCCcEEEEEEC
Confidence            57899999999999977799999999999999999999999998889999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCceEEEEEEEEEe
Q 011003          115 PELAYGESGSPPTIPPNATLQFDVELLSWT  144 (496)
Q Consensus       115 ~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~  144 (496)
                      |++|||..+.++.||++++|+|+|+|++++
T Consensus        82 ~~layG~~g~~~~IPp~s~lif~ieLl~ik  111 (111)
T d1kt1a2          82 PEYAYGATGSLPKIPSNATLFFEVELLDFK  111 (111)
T ss_dssp             ---CCCTTTCTTTSCTTCCCEEEEEEEEEE
T ss_pred             HHHhCCCCCCCCcCCcCCeEEEEEEEEEEC
Confidence            999999999888999999999999999874

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.6e-24  Score=178.71  Aligned_cols=111  Identities=42%  Similarity=0.607  Sum_probs=103.6

Q ss_pred             cCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEE
Q 011003          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT  347 (496)
Q Consensus       268 ~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~  347 (496)
                      .|++++|+++++|+|...|..+|+|.|||++++.||++|+++..  ...|+.|.+|.+++++||+.+|.+|++||+++|+
T Consensus         9 ~d~gv~~~i~~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~--~~~p~~f~~g~~~~i~G~~~~l~~M~~Ge~~~~~   86 (120)
T d1q1ca1           9 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLD--RKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHIT   86 (120)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTT--SSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEE
T ss_pred             CCCCEEEEEEEcccCCcCCCCCCEEEEEEEEEEcCCCEEEeccc--cccceeeecCCCceeeeeeeeeccccCCcEEEEE
Confidence            47899999999999978899999999999999999999998754  6789999999999999999999999999999999


Q ss_pred             EcCCCccCCccccccccCCCCCCeEEEEEEEeeeec
Q 011003          348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (496)
Q Consensus       348 i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~~  383 (496)
                      |||++|||+.+.+   +.|||+++|+|+|+|++++.
T Consensus        87 ip~~laYG~~g~~---~~IPp~s~LifeIeLl~v~~  119 (120)
T d1q1ca1          87 CKPEYAYGSAGSP---PKIPPNATLVFEVELFEFKG  119 (120)
T ss_dssp             ECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEEC
T ss_pred             ECHHHhCCCcCCC---CCCCcCCcEEEEEEEEEEeC
Confidence            9999999998865   57999999999999999863

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.92  E-value=9.4e-25  Score=179.76  Aligned_cols=110  Identities=39%  Similarity=0.632  Sum_probs=103.0

Q ss_pred             cCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEE
Q 011003          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT  347 (496)
Q Consensus       268 ~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~  347 (496)
                      .|+++.++++++|+|...|..||+|++||.+++.||++|+++..  ...|+.|.+|.+++++||+++|.+|++||+++|+
T Consensus         8 ~d~Gl~~~il~~G~G~~~p~~gd~V~v~y~~~l~dG~v~dss~~--~~~p~~f~~g~~~vi~G~~~~l~~M~~Ge~~~~~   85 (118)
T d1r9ha_           8 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRD--RGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFT   85 (118)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHH--HTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEE
T ss_pred             CCCCEEEEEEECcCCCCCCCCCCEEEEEEEEEEcCCCEEEEccc--cceeeeeeccCcceeeeeeeeeeeecCCceEEEE
Confidence            57899999999999978899999999999999999999998754  5689999999999999999999999999999999


Q ss_pred             EcCCCccCCccccccccCCCCCCeEEEEEEEeeee
Q 011003          348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (496)
Q Consensus       348 i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~  382 (496)
                      |||++|||+.+.+   +.|||+++|+|+|+|++|.
T Consensus        86 ipp~laYG~~g~~---~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          86 IRSDYGYGDAGSP---PKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             ECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEE
T ss_pred             ECHHHhCCcCCCC---CccCcCCcEEEEEEEEEEe
Confidence            9999999999875   5799999999999999985

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.91  E-value=1.9e-24  Score=195.83  Aligned_cols=110  Identities=36%  Similarity=0.634  Sum_probs=104.4

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEE
Q 011003           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (496)
Q Consensus        33 ~~~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~  112 (496)
                      ..+++||+|+++++|+| ..|..||.|.|||++++.||++|++|+.++.|+.|.+|  ++|+||+++|.+|++|++++|+
T Consensus        94 ~~~~sGl~y~v~~~G~G-~~p~~~d~v~v~y~g~l~dg~~f~~s~~~~~p~~~~~~--~~i~G~~e~l~~m~~G~~~~~~  170 (204)
T d1fd9a_          94 VVLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVS--QVIPGWTEALQLMPAGSTWEIY  170 (204)
T ss_dssp             EECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEE
T ss_pred             EEecCccEEEEeecCCC-cccCCCCEEEEEEEEEECCCCEecccccCCCCceecCC--ccchhHHHHhcCCCCCCEEEEE
Confidence            55899999999999999 78999999999999999999999999888899999887  7999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCceEEEEEEEEEee
Q 011003          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (496)
Q Consensus       113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~  145 (496)
                      |||++|||..+.++.||||++|+|+|+|+++..
T Consensus       171 iP~~laYG~~g~~~~Ipp~s~l~feveL~~i~k  203 (204)
T d1fd9a_         171 VPSGLAYGPRSVGGPIGPNETLIFKIHLISVKK  203 (204)
T ss_dssp             ECGGGTTTTCCCSSSCCTTCCEEEEEEEEEEEC
T ss_pred             EChHHCcCCCCCCCCcCcCCcEEEEEEEEEEEc
Confidence            999999999998888999999999999999863

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.5e-24  Score=173.90  Aligned_cols=110  Identities=41%  Similarity=0.652  Sum_probs=100.5

Q ss_pred             ceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCC-----CCcccEEEEcCccchhhHHHHHHhccccCcEEE
Q 011003          271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHS-----EEEQLFEFKTDEEQVIDGLDRAVITMKKNEVAL  345 (496)
Q Consensus       271 ~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~-----~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~  345 (496)
                      ++.|+|+++|+|...|..||.|+|||.+++.||++||++...     ...+|+.|.+|.+++++||+++|.+|++||+++
T Consensus         2 ~~~k~vl~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~~~~~~~~p~~f~lg~~~~i~Gl~~~v~~M~~Ge~~~   81 (116)
T d1pbka_           2 KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKAR   81 (116)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCSSCCTTTSSCCEEEETTTTSSCHHHHHHHTTCCTTCEEE
T ss_pred             cceEEEEecCCCCCCCCCCCEEEEEEEEEECCCCEeecccccccccccCCCceeeeecccccccchheechhhcCCcEEE
Confidence            578999999999778999999999999999999999987531     356799999999999999999999999999999


Q ss_pred             EEEcCCCccCCccccccccCCCCCCeEEEEEEEeeee
Q 011003          346 LTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (496)
Q Consensus       346 v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~  382 (496)
                      |+|||++|||+.+...  ..|||+++|+|+|+|++++
T Consensus        82 ~~ip~~~ayG~~g~~~--~~Ipp~s~L~feieLl~ve  116 (116)
T d1pbka_          82 LEIEPEWAYGKKGQPD--AKIPPNAKLTFEVELVDID  116 (116)
T ss_dssp             EEECGGGTTTTTCBGG--GTBCTTCCEEEEEEEEEEC
T ss_pred             EEECHHHhCCccCCCC--CCcCcCCeEEEEEEEEEEC
Confidence            9999999999988753  5799999999999999874

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=4.7e-24  Score=194.04  Aligned_cols=108  Identities=49%  Similarity=0.916  Sum_probs=103.2

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEE
Q 011003           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (496)
Q Consensus        33 ~~~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~  112 (496)
                      ..+++||+|+++++|+| ..|..||.|.|||++++.||++|++|+.++.|+.|.+|  ++|+||+++|.+|++|++++|+
T Consensus       103 ~~~~sGl~y~v~~~G~G-~~p~~gd~v~v~y~g~l~dG~~fd~s~~~~~p~~~~~~--~vi~g~~e~l~~m~~G~k~~~~  179 (210)
T d1q6ha_         103 KTSSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLV  179 (210)
T ss_dssp             EECTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEGG--GSCHHHHHHGGGSCTTCEEEEE
T ss_pred             EEccCceEEEEeeCCCC-CCCCCCceEEEEEEEEEcCCCEEeecccCCCcceeccC--ccchhHHHHHhhccCCCEEEEE
Confidence            56899999999999999 89999999999999999999999999998999999997  7999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCceEEEEEEEEEe
Q 011003          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (496)
Q Consensus       113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~  144 (496)
                      |||++|||+.+.+ .||||++|+|+|+|++++
T Consensus       180 iP~~laYG~~g~~-~Ippns~Lvfevel~~ik  210 (210)
T d1q6ha_         180 IPPELAYGKAGVP-GIPPNSTLVFDVELLDVK  210 (210)
T ss_dssp             ECGGGTTTTTCBT-TBCTTCCEEEEEEEEEEC
T ss_pred             ECHHHCcCCCCCC-CCCcCCcEEEEEEEEEEC
Confidence            9999999999976 599999999999999873

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.5e-24  Score=174.24  Aligned_cols=107  Identities=47%  Similarity=0.845  Sum_probs=99.1

Q ss_pred             CeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecC-------CCccEEEEeCCCcccHHHHHHHccCcCCcEEE
Q 011003           38 GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRD-------RSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV  110 (496)
Q Consensus        38 g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~-------~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~  110 (496)
                      .+.++|+++|+|...|+.||.|.|||++++.||++||+|++       ..+|+.|.+|.+++++||+++|.+|++||+++
T Consensus         2 ~~~k~vl~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~~~~~~~~p~~f~lg~~~~i~Gl~~~v~~M~~Ge~~~   81 (116)
T d1pbka_           2 KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKAR   81 (116)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCSSCCTTTSSCCEEEETTTTSSCHHHHHHHTTCCTTCEEE
T ss_pred             cceEEEEecCCCCCCCCCCCEEEEEEEEEECCCCEeecccccccccccCCCceeeeecccccccchheechhhcCCcEEE
Confidence            47899999999977799999999999999999999999964       35799999999999999999999999999999


Q ss_pred             EEecCCcccCCCCCC-CCCCCCCceEEEEEEEEEe
Q 011003          111 FTIPPELAYGESGSP-PTIPPNATLQFDVELLSWT  144 (496)
Q Consensus       111 i~ip~~~ayg~~~~~-~~ip~~~~l~~~v~l~~~~  144 (496)
                      |+|||++|||..+.+ ..||++++|+|+|+|+++.
T Consensus        82 ~~ip~~~ayG~~g~~~~~Ipp~s~L~feieLl~ve  116 (116)
T d1pbka_          82 LEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDID  116 (116)
T ss_dssp             EEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEC
T ss_pred             EEECHHHhCCccCCCCCCcCcCCeEEEEEEEEEEC
Confidence            999999999999875 5799999999999999873

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.1e-24  Score=172.01  Aligned_cols=107  Identities=32%  Similarity=0.597  Sum_probs=99.4

Q ss_pred             ceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcC
Q 011003          271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAP  350 (496)
Q Consensus       271 ~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~  350 (496)
                      ++.++++++|+|...|..||.|++||.+++.||++|+++..  ...|+.|.+|.+++++||+.+|.+|++||+++|+|||
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~y~g~l~dG~~~d~s~~--~~~p~~~~~g~~~~i~G~~~~l~~M~~Ge~~~~~ip~   78 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRD--RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISP   78 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHH--HTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECG
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEEEEEEecCCeEEEeeec--cceeeeEeeCcchhheeehhhhcCccCCCEEEEEECH
Confidence            57899999999977799999999999999999999998754  5789999999999999999999999999999999999


Q ss_pred             CCccCCccccccccCCCCCCeEEEEEEEeeee
Q 011003          351 EYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (496)
Q Consensus       351 ~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~  382 (496)
                      ++|||+.+.+   +.|||+++|+|+|+|++++
T Consensus        79 ~laYG~~g~~---~~IPp~s~lif~ieL~~vk  107 (107)
T d2ppna1          79 DYAYGATGHP---GIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             GGTTTTTCBT---TTBCTTCCEEEEEEEEEEC
T ss_pred             HHhCCCCCCC---CCCCcCCeEEEEEEEEEEC
Confidence            9999998865   5699999999999999874

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.4e-23  Score=171.82  Aligned_cols=109  Identities=30%  Similarity=0.483  Sum_probs=101.7

Q ss_pred             cCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEE
Q 011003          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT  347 (496)
Q Consensus       268 ~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~  347 (496)
                      .|+++.++++++|+|...|..||.|.+||.+++.||++|++++.  ...++.|.++.+++++||+++|++|++||+++|+
T Consensus         4 ~d~gl~~~~l~~G~G~~~P~~gd~V~v~y~~~~~dG~~~ds~~~--~~~~~~~~~~~~~~i~G~~~~l~~M~~G~~~~~~   81 (113)
T d1yata_           4 IEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVD--RGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLT   81 (113)
T ss_dssp             CGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTT--TTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEE
T ss_pred             ccCCcEEEEEECccCCcCCCCCCEEEEEEEEEEecCcEEecccc--CCceEeeeeccCceeeehhhhcccccCCCEEEEE
Confidence            37899999999999977899999999999999999999998754  6789999999999999999999999999999999


Q ss_pred             EcCCCccCCccccccccCCCCCCeEEEEEEEeee
Q 011003          348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (496)
Q Consensus       348 i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~  381 (496)
                      |||++|||+.+.+   +.|||+++|+|+|+|+++
T Consensus        82 iP~~laYG~~g~~---~~IP~~s~Lif~ieLl~I  112 (113)
T d1yata_          82 IPGPYAYGPRGFP---GLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             ECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEE
T ss_pred             echHHeecCcCCC---CccCcCCeEEEEEEEEEe
Confidence            9999999999875   469999999999999986

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.90  E-value=1.2e-24  Score=177.31  Aligned_cols=110  Identities=38%  Similarity=0.591  Sum_probs=84.9

Q ss_pred             cCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEE
Q 011003          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT  347 (496)
Q Consensus       268 ~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~  347 (496)
                      .|+++.++++++|+|...|..||.|.|||++++.||++||++..  ...|+.|.+|.+++++||+.+|.+|++||+++|+
T Consensus         2 ~d~Gi~~~i~~~G~g~~~P~~gd~V~v~y~~~l~dG~~~dss~~--~~~p~~f~lg~~~~i~G~~~~l~~M~~Ge~~~~~   79 (111)
T d1kt1a2           2 KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHD--RNEPFVFSIGKGQVIKAWDIGVATMKKGEICHLL   79 (111)
T ss_dssp             CSCSCEEEC----CCSCCCCTTCEEEEECCCCSCC--------------CEEEETTSSSSCHHHHHSTTTCCTTCCEEEE
T ss_pred             CCCCeEEEEEEcccCCcCCCCCCEEEEEEEEEECCCCEEEEEEe--cceeeeeecCCCcEEeeeeeeehhccCCcEEEEE
Confidence            46899999999999977899999999999999999999988754  6789999999999999999999999999999999


Q ss_pred             EcCCCccCCccccccccCCCCCCeEEEEEEEeeee
Q 011003          348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (496)
Q Consensus       348 i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~  382 (496)
                      |||++|||+.+..   +.|||+++|+|+|+|++++
T Consensus        80 ip~~layG~~g~~---~~IPp~s~lif~ieLl~ik  111 (111)
T d1kt1a2          80 CKPEYAYGATGSL---PKIPSNATLFFEVELLDFK  111 (111)
T ss_dssp             C----CCCTTTCT---TTSCTTCCCEEEEEEEEEE
T ss_pred             ECHHHhCCCCCCC---CcCCcCCeEEEEEEEEEEC
Confidence            9999999998864   5799999999999999885

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.89  E-value=1.9e-23  Score=181.23  Aligned_cols=114  Identities=42%  Similarity=0.669  Sum_probs=103.4

Q ss_pred             eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEE
Q 011003           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (496)
Q Consensus        33 ~~~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~  112 (496)
                      ..+++||+|+++++|+|...|..||.|.|||++++.||++|+++...+.|  |.++.+++++||+++|.+|++|++++|+
T Consensus        30 ~~~~sGl~y~il~~G~G~~~P~~gd~V~v~Y~g~l~dG~~fds~~~~~~p--~~~~~~~~i~G~~e~l~~M~~Ge~~~v~  107 (160)
T d1jvwa_          30 VKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKP--TTFRPNEVIKGWTEALQLMREGDRWRLF  107 (160)
T ss_dssp             EECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHHHTSC--EEECGGGSCHHHHHHHTTCCTTCEEEEE
T ss_pred             EECCCCCEEEEEECcccccCCCCCcceEEEEEEEEccCCeeeeeccccCc--cccCccccchhHHHHhcCccccceeEEE
Confidence            55899999999999999667899999999999999999999999876667  4556679999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCceEEEEEEEEEeecce
Q 011003          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKD  148 (496)
Q Consensus       113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~~~~  148 (496)
                      |||++|||..+.++.||+|++|+|+|+|+++.+...
T Consensus       108 iPp~laYG~~g~~~~IPp~s~LifeIeLl~i~~~~~  143 (160)
T d1jvwa_         108 IPYDLAYGVTGGGGMIPPYSPLEFDVELISIKDGGK  143 (160)
T ss_dssp             ECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGGGCC
T ss_pred             eCHHHCcCCCCCCCCcCcCCcEEEEEEEEEEecCCC
Confidence            999999999988778999999999999999975433

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.89  E-value=1.4e-23  Score=175.24  Aligned_cols=111  Identities=41%  Similarity=0.712  Sum_probs=102.6

Q ss_pred             eeecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHcc------CcC
Q 011003           32 KEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKT------MKK  105 (496)
Q Consensus        32 ~~~~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~------m~~  105 (496)
                      ...+++||+|+++++|+| +.|+.||.|.|||++++.||++|++|+..+.|+.|.+|.+.++++|++++.+      |++
T Consensus         3 ~~~~psGl~y~~~~~G~G-~~p~~gd~V~v~y~g~l~~G~~fdss~~~~~p~~~~~g~~~~i~g~~~~i~g~~~l~~M~~   81 (125)
T d1u79a_           3 FSVSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLT   81 (125)
T ss_dssp             CEECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBT
T ss_pred             cEECCCCCEEEEEEeccC-CCCCCCCEEEEEEEeeecCCcEEecccccCcceeEecCccccccchhhhccchhhcccccC
Confidence            457899999999999999 7899999999999999999999999988789999999999999999998865      999


Q ss_pred             CcEEEEEecCCcccCCCCC-----CCCCCCCCceEEEEEEEEE
Q 011003          106 GENAVFTIPPELAYGESGS-----PPTIPPNATLQFDVELLSW  143 (496)
Q Consensus       106 Ge~~~i~ip~~~ayg~~~~-----~~~ip~~~~l~~~v~l~~~  143 (496)
                      |++++|+|||++|||.++.     ...||++++|+|+|+|+.+
T Consensus        82 G~k~~v~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          82 GGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             TCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             CCEEEEEECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            9999999999999999874     2459999999999999875

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.87  E-value=6.1e-22  Score=162.80  Aligned_cols=110  Identities=35%  Similarity=0.660  Sum_probs=97.1

Q ss_pred             eeeccCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCc---cchhhHHHHHHhcccc
Q 011003          264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE---EQVIDGLDRAVITMKK  340 (496)
Q Consensus       264 ~d~~~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~---~~~~~gle~~l~~M~~  340 (496)
                      ++++.|+++.|+++++|+|...|..+++|+|||.+++ +|++|+++       +..|.++.   +.+|+||+.+|.+|++
T Consensus         2 e~~~~D~gi~k~il~~G~G~~~p~~gd~V~v~y~g~~-~g~~~~~~-------~~~~~~~~~~~~~vi~G~~~~l~~M~~   73 (115)
T d1kt1a3           2 EDLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRC-GGRVFDCR-------DVAFTVGEGEDHDIPIGIDKALEKMQR   73 (115)
T ss_dssp             EETTSSSSEEEEEEECCCCSSCCCTTCEEEEEEEEEE-TTEEEEEE-------EEEEETTCGGGGTCCHHHHHHHTTCCT
T ss_pred             CccccCCCEEEEEEEeecCCCCCCCCCEEEEEEEEEe-CCcccccc-------ccCceeeeccccccCchhHhhhccchh
Confidence            5788999999999999999889999999999999996 77777543       45666664   4689999999999999


Q ss_pred             CcEEEEEEcCCCccCCccccccccCCCCCCeEEEEEEEeeeec
Q 011003          341 NEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (496)
Q Consensus       341 Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~~  383 (496)
                      ||+++|+|||++|||+.+.+.  ..|||+++|+|+|+|++|++
T Consensus        74 Ge~~~v~ip~~~ayG~~g~~~--~~Ipp~a~l~f~ieLl~~~k  114 (115)
T d1kt1a3          74 EEQCILHLGPRYGFGEAGKPK--FGIEPNAELIYEVTLKSFEK  114 (115)
T ss_dssp             TCEEEEEECGGGSSCTTCBTT--TTBCTTCCEEEEEEEEEEEC
T ss_pred             hceeEEEeCHHHCcCCCCCCC--CCcCcCCeEEEEEEEEEEEe
Confidence            999999999999999998753  46999999999999999975

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.87  E-value=4e-22  Score=172.75  Aligned_cols=117  Identities=23%  Similarity=0.388  Sum_probs=101.9

Q ss_pred             eccCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEE
Q 011003          266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVAL  345 (496)
Q Consensus       266 ~~~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~  345 (496)
                      .+.+++++++++++|.|...|..||+|.|||.+++.||++|+++..  ...|  |.++.+.+++||+.+|.+|++||+++
T Consensus        30 ~~~~sGl~y~il~~G~G~~~P~~gd~V~v~Y~g~l~dG~~fds~~~--~~~p--~~~~~~~~i~G~~e~l~~M~~Ge~~~  105 (160)
T d1jvwa_          30 VKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRE--RGKP--TTFRPNEVIKGWTEALQLMREGDRWR  105 (160)
T ss_dssp             EECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHH--HTSC--EEECGGGSCHHHHHHHTTCCTTCEEE
T ss_pred             EECCCCCEEEEEECcccccCCCCCcceEEEEEEEEccCCeeeeecc--ccCc--cccCccccchhHHHHhcCccccceeE
Confidence            3457899999999999977899999999999999999999998743  3445  55678899999999999999999999


Q ss_pred             EEEcCCCccCCccccccccCCCCCCeEEEEEEEeeeeccccccc
Q 011003          346 LTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWD  389 (496)
Q Consensus       346 v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~~~~~~~~  389 (496)
                      |+|||++|||..+..   +.|||+++|+|+|+|++++.......
T Consensus       106 v~iPp~laYG~~g~~---~~IPp~s~LifeIeLl~i~~~~~~~~  146 (160)
T d1jvwa_         106 LFIPYDLAYGVTGGG---GMIPPYSPLEFDVELISIKDGGKGRT  146 (160)
T ss_dssp             EEECGGGTTTTTCSS---SSSCTTCCEEEEEEEEEEGGGCCSCB
T ss_pred             EEeCHHHCcCCCCCC---CCcCcCCcEEEEEEEEEEecCCCCCC
Confidence            999999999998764   56999999999999999986544433

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.86  E-value=1.2e-21  Score=161.10  Aligned_cols=109  Identities=30%  Similarity=0.657  Sum_probs=96.5

Q ss_pred             eeeecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCC---CcccHHHHHHHccCcCCc
Q 011003           31 EKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQ---GNVIKGWDIGIKTMKKGE  107 (496)
Q Consensus        31 ~~~~~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~---~~~~~gle~~l~~m~~Ge  107 (496)
                      ++++.++||.|+++++|+|...|+.||.|.+||++++ +|++|+++     +..|.++.   .++++||+++|.+|++|+
T Consensus         2 e~~~~D~gi~k~il~~G~G~~~p~~gd~V~v~y~g~~-~g~~~~~~-----~~~~~~~~~~~~~vi~G~~~~l~~M~~Ge   75 (115)
T d1kt1a3           2 EDLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRC-GGRVFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQREE   75 (115)
T ss_dssp             EETTSSSSEEEEEEECCCCSSCCCTTCEEEEEEEEEE-TTEEEEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCTTC
T ss_pred             CccccCCCEEEEEEEeecCCCCCCCCCEEEEEEEEEe-CCcccccc-----ccCceeeeccccccCchhHhhhccchhhc
Confidence            3456889999999999999778999999999999996 88888764     46677765   358999999999999999


Q ss_pred             EEEEEecCCcccCCCCCCC-CCCCCCceEEEEEEEEEee
Q 011003          108 NAVFTIPPELAYGESGSPP-TIPPNATLQFDVELLSWTS  145 (496)
Q Consensus       108 ~~~i~ip~~~ayg~~~~~~-~ip~~~~l~~~v~l~~~~~  145 (496)
                      +++|+|||++|||..+.++ .||++++|+|+|+|+++..
T Consensus        76 ~~~v~ip~~~ayG~~g~~~~~Ipp~a~l~f~ieLl~~~k  114 (115)
T d1kt1a3          76 QCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK  114 (115)
T ss_dssp             EEEEEECGGGSSCTTCBTTTTBCTTCCEEEEEEEEEEEC
T ss_pred             eeEEEeCHHHCcCCCCCCCCCcCcCCeEEEEEEEEEEEe
Confidence            9999999999999998765 6999999999999999864

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.86  E-value=7.9e-22  Score=178.47  Aligned_cols=110  Identities=25%  Similarity=0.436  Sum_probs=100.1

Q ss_pred             eccCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEE
Q 011003          266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVAL  345 (496)
Q Consensus       266 ~~~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~  345 (496)
                      .+.+++++++++++|+| .+|..+|+|.|||.+++.||++|++++.  ...|++|.+|  ++|+||+++|.+|++|++++
T Consensus        94 ~~~~sGl~y~v~~~G~G-~~p~~~d~v~v~y~g~l~dg~~f~~s~~--~~~p~~~~~~--~~i~G~~e~l~~m~~G~~~~  168 (204)
T d1fd9a_          94 VVLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEK--TGKPATFQVS--QVIPGWTEALQLMPAGSTWE  168 (204)
T ss_dssp             EECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHH--HCSCEEEEGG--GSCHHHHHHHTTCCTTCEEE
T ss_pred             EEecCccEEEEeecCCC-cccCCCCEEEEEEEEEECCCCEeccccc--CCCCceecCC--ccchhHHHHhcCCCCCCEEE
Confidence            34578999999999999 8899999999999999999999998854  5678888665  79999999999999999999


Q ss_pred             EEEcCCCccCCccccccccCCCCCCeEEEEEEEeeeec
Q 011003          346 LTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (496)
Q Consensus       346 v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~~  383 (496)
                      |+|||++|||+.|.+   +.|||+++|+|+|+|+++.+
T Consensus       169 ~~iP~~laYG~~g~~---~~Ipp~s~l~feveL~~i~k  203 (204)
T d1fd9a_         169 IYVPSGLAYGPRSVG---GPIGPNETLIFKIHLISVKK  203 (204)
T ss_dssp             EEECGGGTTTTCCCS---SSCCTTCCEEEEEEEEEEEC
T ss_pred             EEEChHHCcCCCCCC---CCcCcCCcEEEEEEEEEEEc
Confidence            999999999999875   57999999999999999975

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=3.4e-21  Score=174.91  Aligned_cols=107  Identities=32%  Similarity=0.544  Sum_probs=99.0

Q ss_pred             ccCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEE
Q 011003          267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL  346 (496)
Q Consensus       267 ~~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v  346 (496)
                      ..+.+++++++++|+| ..|..|+.|.|||.+++.||++|+++..  .+.|+.|.+|  ++|+||+++|.+|++|++++|
T Consensus       104 ~~~sGl~y~v~~~G~G-~~p~~gd~v~v~y~g~l~dG~~fd~s~~--~~~p~~~~~~--~vi~g~~e~l~~m~~G~k~~~  178 (210)
T d1q6ha_         104 TSSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYT--RGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKL  178 (210)
T ss_dssp             ECTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGG--GTSCEEEEGG--GSCHHHHHHGGGSCTTCEEEE
T ss_pred             EccCceEEEEeeCCCC-CCCCCCceEEEEEEEEEcCCCEEeeccc--CCCcceeccC--ccchhHHHHHhhccCCCEEEE
Confidence            4568999999999999 8999999999999999999999999864  6789999986  799999999999999999999


Q ss_pred             EEcCCCccCCccccccccCCCCCCeEEEEEEEeeee
Q 011003          347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (496)
Q Consensus       347 ~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~  382 (496)
                      +|||++|||+.+.+    .|||+++|+|+|+|++++
T Consensus       179 ~iP~~laYG~~g~~----~Ippns~Lvfevel~~ik  210 (210)
T d1q6ha_         179 VIPPELAYGKAGVP----GIPPNSTLVFDVELLDVK  210 (210)
T ss_dssp             EECGGGTTTTTCBT----TBCTTCCEEEEEEEEEEC
T ss_pred             EECHHHCcCCCCCC----CCCcCCcEEEEEEEEEEC
Confidence            99999999999864    499999999999999874

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=6.2e-21  Score=157.11  Aligned_cols=108  Identities=38%  Similarity=0.683  Sum_probs=93.7

Q ss_pred             cCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCc---cchhhHHHHHHhccccCcEE
Q 011003          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE---EQVIDGLDRAVITMKKNEVA  344 (496)
Q Consensus       268 ~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~---~~~~~gle~~l~~M~~Ge~~  344 (496)
                      .|+++.|+|+++|+|..+|..|+.|+|||++++.++++..        .+..+..+.   ..+++||+.+|.+|++||++
T Consensus         6 ~D~gi~~~il~~G~G~~~p~~gd~V~v~y~g~~~~~~~~~--------~~~~~~~~~~~~~~~i~Gl~~~l~~M~~Ge~~   77 (117)
T d1q1ca2           6 EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQ--------RELRFEIGEGENLDLPYGLERAIQRMEKGEHS   77 (117)
T ss_dssp             CSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEETTEEEEE--------EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEE
T ss_pred             CCCCEEEEEEeeecCCCCCCCCCEEEEEEEEEeCCCcEee--------ccccceeeecceeeeCcHHHHhhhcchhhCeE
Confidence            5789999999999998899999999999999998876442        234455554   46899999999999999999


Q ss_pred             EEEEcCCCccCCccccccccCCCCCCeEEEEEEEeeeeccc
Q 011003          345 LLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEK  385 (496)
Q Consensus       345 ~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~~~~  385 (496)
                      +|+|||++|||+.+.+.  ..|||+++|+|+|+|+++.+.+
T Consensus        78 ~i~ip~~~ayG~~g~~~--~~Ipp~s~l~f~veL~~~~~~k  116 (117)
T d1q1ca2          78 IVYLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSFEKAK  116 (117)
T ss_dssp             EEEECGGGTTTTTCBGG--GTBCTTCCEEEEEEEEEEECCC
T ss_pred             EEEECHHHhCcccCCCC--CccCcCCeEEEEEEEEEEEeCC
Confidence            99999999999988753  5799999999999999998755

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.83  E-value=8.1e-21  Score=158.20  Aligned_cols=112  Identities=23%  Similarity=0.419  Sum_probs=100.3

Q ss_pred             ccCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhc------ccc
Q 011003          267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVIT------MKK  340 (496)
Q Consensus       267 ~~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~------M~~  340 (496)
                      +.++++.++++++|+| +.|..||+|.|||++++.||++|+++..  ...|+.|.+|.+.++++|+.++.+      |++
T Consensus         5 ~~psGl~y~~~~~G~G-~~p~~gd~V~v~y~g~l~~G~~fdss~~--~~~p~~~~~g~~~~i~g~~~~i~g~~~l~~M~~   81 (125)
T d1u79a_           5 VSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYN--RGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLT   81 (125)
T ss_dssp             ECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHH--HTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBT
T ss_pred             ECCCCCEEEEEEeccC-CCCCCCCEEEEEEEeeecCCcEEecccc--cCcceeEecCccccccchhhhccchhhcccccC
Confidence            4577999999999999 8899999999999999999999998754  568999999999999999998865      999


Q ss_pred             CcEEEEEEcCCCccCCcccccc--ccCCCCCCeEEEEEEEeee
Q 011003          341 NEVALLTIAPEYAFGSAESQQE--LAVVPPNSTVHYEVELVSF  381 (496)
Q Consensus       341 Ge~~~v~i~~~~~yg~~~~~~~--~~~ip~~~~l~f~v~l~~~  381 (496)
                      ||+++|+|||++|||+.+....  ...|||+++|+|+|||+.+
T Consensus        82 G~k~~v~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          82 GGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             TCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             CCEEEEEECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            9999999999999999875321  2459999999999999975

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.9e-20  Score=153.06  Aligned_cols=107  Identities=32%  Similarity=0.644  Sum_probs=92.1

Q ss_pred             cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCC---CcccHHHHHHHccCcCCcEEEE
Q 011003           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQ---GNVIKGWDIGIKTMKKGENAVF  111 (496)
Q Consensus        35 ~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~---~~~~~gle~~l~~m~~Ge~~~i  111 (496)
                      .++||+|+++++|+|+..|..||.|.+||++++.+| .++++     +..|..+.   .++++||+++|.+|++|++++|
T Consensus         6 ~D~gi~~~il~~G~G~~~p~~gd~V~v~y~g~~~~~-~~~~~-----~~~~~~~~~~~~~~i~Gl~~~l~~M~~Ge~~~i   79 (117)
T d1q1ca2           6 EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDK-LFDQR-----ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIV   79 (117)
T ss_dssp             CSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEETTE-EEEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEE
T ss_pred             CCCCEEEEEEeeecCCCCCCCCCEEEEEEEEEeCCC-cEeec-----cccceeeecceeeeCcHHHHhhhcchhhCeEEE
Confidence            458999999999999778999999999999998665 45543     34555554   3689999999999999999999


Q ss_pred             EecCCcccCCCCCCC-CCCCCCceEEEEEEEEEeecc
Q 011003          112 TIPPELAYGESGSPP-TIPPNATLQFDVELLSWTSVK  147 (496)
Q Consensus       112 ~ip~~~ayg~~~~~~-~ip~~~~l~~~v~l~~~~~~~  147 (496)
                      +|||++|||..+.+. .||++++|+|+|+|+++...+
T Consensus        80 ~ip~~~ayG~~g~~~~~Ipp~s~l~f~veL~~~~~~k  116 (117)
T d1q1ca2          80 YLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAK  116 (117)
T ss_dssp             EECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEECCC
T ss_pred             EECHHHhCcccCCCCCccCcCCeEEEEEEEEEEEeCC
Confidence            999999999998754 799999999999999997644

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.79  E-value=1.5e-19  Score=159.07  Aligned_cols=111  Identities=35%  Similarity=0.592  Sum_probs=105.9

Q ss_pred             ccccccChHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCH
Q 011003          385 KESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY  464 (496)
Q Consensus       385 ~~~~~~~~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~  464 (496)
                      ++.|.|+..|+++.+..++++||.+|+.|+|.+|+..|++|+.+++.......+.......+...+|+|||.||+++++|
T Consensus         1 ~e~~~m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~   80 (168)
T d1kt1a1           1 KESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY   80 (168)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhc
Confidence            47899999999999999999999999999999999999999999988888888888888999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003          465 KQAEKLCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       465 ~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      .+|+.+|++||+++|+|++|||++|++|..+
T Consensus        81 ~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l  111 (168)
T d1kt1a1          81 TKAVECCDKALGLDSANEKGLYRRGEAQLLM  111 (168)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             ccchhhhhhhhhcccchHHHHHHHHHHHHHc
Confidence            9999999999999999999999999998765

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.77  E-value=3.9e-19  Score=153.83  Aligned_cols=112  Identities=27%  Similarity=0.370  Sum_probs=101.3

Q ss_pred             cccccccChHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCCh-HHHHHHHHHHHHhhhHHHHHHHhcc
Q 011003          384 EKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD-EEKKQAKALKVACNLNNAACKLKLK  462 (496)
Q Consensus       384 ~~~~~~~~~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~-~~~~~~~~~~~~~~~N~a~~~~kl~  462 (496)
                      .++.|+|+.+++++.+..++++||.+|++|+|.+|+..|++|++++........ ........+...+|+|||.||++++
T Consensus         2 ~~~~~~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~   81 (153)
T d2fbna1           2 KKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNK   81 (153)
T ss_dssp             CCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhc
Confidence            357899999999999999999999999999999999999999999876655444 3455667788899999999999999


Q ss_pred             CHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003          463 DYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       463 ~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      +|.+|+.+|++||+++|+|+|||||+|++|..+
T Consensus        82 ~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~l  114 (153)
T d2fbna1          82 DYPKAIDHASKVLKIDKNNVKALYKLGVANMYF  114 (153)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhccccccchhhhhhHHhHHHHHHc
Confidence            999999999999999999999999999998764

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.5e-18  Score=152.89  Aligned_cols=109  Identities=39%  Similarity=0.696  Sum_probs=104.4

Q ss_pred             ccccChHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHH
Q 011003          387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ  466 (496)
Q Consensus       387 ~~~~~~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~  466 (496)
                      .|+|+.+++++.+..++++||.+|++|+|.+|+..|++||++++........+......+...+|+|+|.||+++++|.+
T Consensus         1 ~~~~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~   80 (170)
T d1p5qa1           1 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSA   80 (170)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhccc
Confidence            59999999999999999999999999999999999999999998888888888888999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCcchhcccccccccc
Q 011003          467 AEKLCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       467 Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      |+.+|++||+++|+|++|||++|.+|..+
T Consensus        81 A~~~~~~al~~~p~~~~a~~~~g~~~~~~  109 (170)
T d1p5qa1          81 AIESCNKALELDSNNEKGLSRRGEAHLAV  109 (170)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             ccchhhhhhhccccchhhhHHHHHHHHHh
Confidence            99999999999999999999999998765

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=99.73  E-value=4.7e-19  Score=151.55  Aligned_cols=124  Identities=25%  Similarity=0.452  Sum_probs=91.6

Q ss_pred             CCCCCEEEEEEEEEEcCCCEEEeecC-------------CCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCccc
Q 011003           53 PENGDEVEVHYTGTLLDGTQFDSSRD-------------RSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAY  119 (496)
Q Consensus        53 ~~~gd~V~v~Y~~~~~dg~~~~~t~~-------------~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ay  119 (496)
                      +++||.|.+||++++.||++|++|++             .+.|+.|.+|.++++|||+++|.||++|+++.|.|||+.||
T Consensus         2 v~~G~~V~v~Y~~~~~~G~~fdsT~e~~~~~~~~~~~~~~~~P~~f~~G~g~~ipglE~al~gm~~Ge~~~v~i~p~~ay   81 (151)
T d1ix5a_           2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY   81 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred             ccCCCEEEEEEEEEECCCCEEEeCchHhcccccccccccCCCCEEEEecCCCccHHHHHHHHhhcCCceeEEEeCHHHhc
Confidence            68999999999999999999999963             35799999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCceEEEEEEEEEeec-----c-eeccCccceeEeeeccccccCCCCCCeEEEEEEEEeCCCceeeec
Q 011003          120 GESGSPPTIPPNATLQFDVELLSWTSV-----K-DICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA  192 (496)
Q Consensus       120 g~~~~~~~ip~~~~l~~~v~l~~~~~~-----~-~~~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~  192 (496)
                      |.++..        +++.+....+...     . ..........+|.+.        .++.|++||||++||.++.|.-
T Consensus        82 G~~d~~--------~v~~vp~~~f~~~~~~~~~~~~~~~~~~~~~V~~v--------~~~~v~vD~NHPlAG~~L~f~v  144 (151)
T d1ix5a_          82 GNRNEM--------LIQKIPRDAFKEADFEPEEGMVILAEGIPATITEV--------TDNEVTLDFNHELAGKDLVFTI  144 (151)
T ss_dssp             CSCCST--------TBCCEETHHHHTSTTCCCTTEEEESSSCEEEEEEE--------ETTEEEEECCCSSTTCCEEEEC
T ss_pred             cccccC--------ccceehhhhccccccccccceEEecCCCceEEEEE--------cCCEEEEECCCcCCCCeEEEEE
Confidence            998743        1111111111000     0 000011122233333        3489999999999999998864

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.53  E-value=5.8e-15  Score=129.23  Aligned_cols=105  Identities=25%  Similarity=0.425  Sum_probs=91.9

Q ss_pred             ChHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCC-CChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHH
Q 011003          391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-FGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK  469 (496)
Q Consensus       391 ~~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~  469 (496)
                      +.+..+..+..++..|+.+|+.|+|.+|+..|++||++++.... ........+++....+++|||.||+++++|.+|+.
T Consensus        19 ~~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~   98 (169)
T d1ihga1          19 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD   98 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhh
Confidence            45667888999999999999999999999999999998754322 22344456688899999999999999999999999


Q ss_pred             HHHHHhcccCCCcchhcccccccccc
Q 011003          470 LCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       470 ~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      +|++||+++|++++|||++|.||+.+
T Consensus        99 ~~~~al~~~p~~~~a~~~~g~~~~~l  124 (169)
T d1ihga1          99 SCLEALEIDPSNTKALYRRAQGWQGL  124 (169)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred             hhhhhhhhhhhhhhHHHhHHHHHHHc
Confidence            99999999999999999999999765

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=99.47  E-value=1.5e-14  Score=123.13  Aligned_cols=74  Identities=32%  Similarity=0.535  Sum_probs=66.8

Q ss_pred             CCCCCeEEEEEEEEEcCCcEEEEcCC-----------CCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCCcc
Q 011003          286 PNEGAVVKVKLIGKLQDGTVFVKKGH-----------SEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAF  354 (496)
Q Consensus       286 p~~~~~V~v~y~~~~~~g~~~~~~~~-----------~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~~y  354 (496)
                      ..+|+.|.+||.+++.||++||+|..           .....|++|.+|.+++++||+.+|.+|++|+++.|.|||+.||
T Consensus         2 v~~G~~V~v~Y~~~~~~G~~fdsT~e~~~~~~~~~~~~~~~~P~~f~~G~g~~ipglE~al~gm~~Ge~~~v~i~p~~ay   81 (151)
T d1ix5a_           2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY   81 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred             ccCCCEEEEEEEEEECCCCEEEeCchHhcccccccccccCCCCEEEEecCCCccHHHHHHHHhhcCCceeEEEeCHHHhc
Confidence            46799999999999999999998843           2356799999999999999999999999999999999999999


Q ss_pred             CCccc
Q 011003          355 GSAES  359 (496)
Q Consensus       355 g~~~~  359 (496)
                      |..+.
T Consensus        82 G~~d~   86 (151)
T d1ix5a_          82 GNRNE   86 (151)
T ss_dssp             CSCCS
T ss_pred             ccccc
Confidence            98754

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=99.46  E-value=4e-14  Score=108.26  Aligned_cols=84  Identities=23%  Similarity=0.435  Sum_probs=76.3

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCcccCCCCCCCCCCCC
Q 011003           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (496)
Q Consensus        52 ~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~  131 (496)
                      +++.||.|.|+|+++. ||+.|+++..  ..+.|.+|.++++|||+++|.||++|+++.|.|++..+|+..+.     +|
T Consensus         1 k~a~GD~V~idy~g~~-dG~~~~~~~~--~~~~~~lg~~~~ipgf~~~l~g~~~Ge~~~~~i~~p~~y~~~~l-----aG   72 (85)
T d1hxva_           1 KLANGDIAIIDFTGIV-DNKKLASASA--QNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKEL-----QS   72 (85)
T ss_dssp             CCCSSEEEEEEEEEEE-TTEECSTTCC--SEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGG-----GS
T ss_pred             CCCCCCEEEEEEEEEE-CCEEcccccc--cCCCEEECCcccCchHHHHhccCcCCCeEEEEEEChhhcCcccC-----CC
Confidence            4679999999999996 9999998765  57899999999999999999999999999999999999998774     67


Q ss_pred             CceEEEEEEEEE
Q 011003          132 ATLQFDVELLSW  143 (496)
Q Consensus       132 ~~l~~~v~l~~~  143 (496)
                      +++.|+|+|.++
T Consensus        73 k~~~f~V~v~~V   84 (85)
T d1hxva_          73 KPVTFEVVLKAI   84 (85)
T ss_dssp             CCCEEEEEECCB
T ss_pred             CcEEEEEEEEEe
Confidence            899999999765

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=1.8e-14  Score=128.85  Aligned_cols=82  Identities=30%  Similarity=0.344  Sum_probs=76.6

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+|++||.+|+.|+|.+|+..|++||.+-+               ....+|+|+|.||+++++|.+|+.+|++||+++
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p---------------~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~   68 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP---------------LVAVYYTNRALCYLKMQQPEQALADCRRALELD   68 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC
Confidence            57899999999999999999999999999843               348899999999999999999999999999999


Q ss_pred             CCCcchhcccccccccc
Q 011003          479 VQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       479 p~~~Ka~~rrg~a~~~l  495 (496)
                      |++++||+++|.+|+.+
T Consensus        69 p~~~~a~~~lg~~~~~l   85 (201)
T d2c2la1          69 GQSVKAHFFLGQCQLEM   85 (201)
T ss_dssp             TTCHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHHC
Confidence            99999999999998765

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.8e-14  Score=122.58  Aligned_cols=89  Identities=21%  Similarity=0.194  Sum_probs=82.5

Q ss_pred             hHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHH
Q 011003          392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC  471 (496)
Q Consensus       392 ~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~  471 (496)
                      .+..++.|.+++.+||.+|+.|+|.+|+..|++|+++               ++....+|.|+|.||+++++|.+|+.+|
T Consensus         3 ~~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~---------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~   67 (159)
T d1a17a_           3 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIEL---------------NPSNAIYYGNRSLAYLRTECYGYALGDA   67 (159)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------STTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhcccc---------------chhhhhhhhhhHHHHHhccccchHHHHH
Confidence            4566899999999999999999999999999999998               4445889999999999999999999999


Q ss_pred             HHHhcccCCCcchhcccccccccc
Q 011003          472 TKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       472 ~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      ++||+++|++++||+++|.++..+
T Consensus        68 ~kal~~~p~~~~a~~~~g~~~~~~   91 (159)
T d1a17a_          68 TRAIELDKKYIKGYYRRAASNMAL   91 (159)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcccchHHHHHHHHHHHHc
Confidence            999999999999999999998765

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3e-14  Score=116.65  Aligned_cols=83  Identities=22%  Similarity=0.169  Sum_probs=76.8

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      .+.+++++||.+|+.|+|++|+..|.+||+.-+               ....+|.|+|.||+++++|.+|+.+|+++|++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p---------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   66 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP---------------HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   66 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------------cchhhhhcccccccccccccccchhhhhHHHh
Confidence            467899999999999999999999999999843               44889999999999999999999999999999


Q ss_pred             cCCCcchhcccccccccc
Q 011003          478 SVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       478 dp~~~Ka~~rrg~a~~~l  495 (496)
                      +|+++++|+++|.++..+
T Consensus        67 ~p~~~~~~~~~g~~~~~~   84 (117)
T d1elwa_          67 KPDWGKGYSRKAAALEFL   84 (117)
T ss_dssp             CTTCHHHHHHHHHHHHHT
T ss_pred             ccchhhHHHHHHHHHHHc
Confidence            999999999999988754

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.5e-13  Score=114.21  Aligned_cols=83  Identities=25%  Similarity=0.316  Sum_probs=73.9

Q ss_pred             HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE  476 (496)
Q Consensus       397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  476 (496)
                      +.|.+.|+.||.+|+.|+|.+|+.+|++||++-+               ....++.|||.||.++++|.+|+.+|++||+
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p---------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDP---------------TNMTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---------------ccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence            3578899999999999999999999999999843               3378999999999999999999999999999


Q ss_pred             ccCCCcchhccccccccc
Q 011003          477 SSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       477 ~dp~~~Ka~~rrg~a~~~  494 (496)
                      ++|++..+|+..|++|..
T Consensus        67 l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_          67 VGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHSTTCHHHHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHH
Confidence            999998877777766643

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=99.28  E-value=3.2e-12  Score=97.41  Aligned_cols=84  Identities=20%  Similarity=0.356  Sum_probs=73.8

Q ss_pred             CCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCCccCCccccccccC
Q 011003          286 PNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAV  365 (496)
Q Consensus       286 p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~  365 (496)
                      +..||.|+|+|.+++ ||+.|+++    ....+.|.+|.+.++|||+.+|.+|++||++.|.+++..+|+..+.      
T Consensus         2 ~a~GD~V~idy~g~~-dG~~~~~~----~~~~~~~~lg~~~~ipgf~~~l~g~~~Ge~~~~~i~~p~~y~~~~l------   70 (85)
T d1hxva_           2 LANGDIAIIDFTGIV-DNKKLASA----SAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKEL------   70 (85)
T ss_dssp             CCSSEEEEEEEEEEE-TTEECSTT----CCSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGG------
T ss_pred             CCCCCEEEEEEEEEE-CCEEcccc----cccCCCEEECCcccCchHHHHhccCcCCCeEEEEEEChhhcCcccC------
Confidence            567999999999997 99998654    3467889999999999999999999999999999999999997543      


Q ss_pred             CCCCCeEEEEEEEeeee
Q 011003          366 VPPNSTVHYEVELVSFE  382 (496)
Q Consensus       366 ip~~~~l~f~v~l~~~~  382 (496)
                        +|+++.|+|+|++++
T Consensus        71 --aGk~~~f~V~v~~Vk   85 (85)
T d1hxva_          71 --QSKPVTFEVVLKAIK   85 (85)
T ss_dssp             --GSCCCEEEEEECCBC
T ss_pred             --CCCcEEEEEEEEEeC
Confidence              578999999998764

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=5.6e-11  Score=92.75  Aligned_cols=86  Identities=15%  Similarity=0.083  Sum_probs=72.3

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp  479 (496)
                      ...-+.|+.+|+.|+|.+|+..|++|+++.+......        .....+|.|+|.|+.++|+|.+|+..+++||+++|
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~--------~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P   77 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIST--------IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP   77 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS--------SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccC--------ccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCc
Confidence            3455789999999999999999999999875442221        12467899999999999999999999999999999


Q ss_pred             CCcchhcccccccc
Q 011003          480 QKGSGIHSDGRFRF  493 (496)
Q Consensus       480 ~~~Ka~~rrg~a~~  493 (496)
                      +|..|++.++....
T Consensus        78 ~~~~a~~Nl~~~~~   91 (95)
T d1tjca_          78 EHQRANGNLKYFEY   91 (95)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999998876543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.98  E-value=1.1e-10  Score=100.01  Aligned_cols=99  Identities=14%  Similarity=0.075  Sum_probs=78.8

Q ss_pred             HHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHH
Q 011003          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (496)
Q Consensus       394 e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~  473 (496)
                      +.+..+...+.+|+.+|..|+|++|+..|++||++.+.......   .........+|+|+|.||.++|+|.+|+.+|++
T Consensus         4 ~~~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~---~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~   80 (156)
T d2hr2a1           4 KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEA---FDHAGFDAFCHAGLAEALAGLRSFDEALHSADK   80 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSC---CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhh---cccchhHHHHHHHHHHHHHHcCccchhhHhhhh
Confidence            34566777888999999999999999999999998765432111   111334578899999999999999999999999


Q ss_pred             HhcccCC-----------Ccchhcccccccccc
Q 011003          474 KCESSVQ-----------KGSGIHSDGRFRFGR  495 (496)
Q Consensus       474 al~~dp~-----------~~Ka~~rrg~a~~~l  495 (496)
                      +|++.|.           +.++|+++|.+|..+
T Consensus        81 al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~l  113 (156)
T d2hr2a1          81 ALHYFNRRGELNQDEGKLWISAVYSRALALDGL  113 (156)
T ss_dssp             HHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhcccccccccccccchhHHHHhhhHHHHHHH
Confidence            9988653           355899999998765

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=6.9e-10  Score=87.76  Aligned_cols=87  Identities=26%  Similarity=0.514  Sum_probs=75.4

Q ss_pred             CCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCcccCCCCCCCCCCC
Q 011003           51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP  130 (496)
Q Consensus        51 ~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~  130 (496)
                      +.++.||.|.|+|+++. ||+.+.+...  ..+.|.+|.+.+++||+++|.||++|+++.|.+.....|.....     +
T Consensus        13 r~a~~GD~v~id~~~~~-dG~~~~~~~~--~~~~~~lg~~~~~~gf~~~L~G~k~Ge~~~~~~~~P~d~~~~~l-----a   84 (106)
T d1l1pa_          13 GAVEAEDRVTIDFTGSV-DGEEFEGGKA--SDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL-----K   84 (106)
T ss_dssp             SSCCTTEEEEEEEECCS-SSSCCSTTEE--EEEEEEETTSCCCTTHHHHTTSCCTTCCEEEEECCCSSCCCTTT-----T
T ss_pred             ccccCCCEEEEEEEEEE-CCEECCCCcc--cceEEEecCCCccchHHHHhcCCCCCceEEEEEEeCCCCCchhh-----C
Confidence            46789999999999975 8988876433  56899999999999999999999999999999998888866553     6


Q ss_pred             CCceEEEEEEEEEee
Q 011003          131 NATLQFDVELLSWTS  145 (496)
Q Consensus       131 ~~~l~~~v~l~~~~~  145 (496)
                      |.++.|.|++.++..
T Consensus        85 GK~v~f~V~v~~i~~   99 (106)
T d1l1pa_          85 GKAAKFAINLKKVEE   99 (106)
T ss_dssp             TCCEEEEEEEEEEEC
T ss_pred             CCEEEEEEEEEEecc
Confidence            799999999999875

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.85  E-value=6.2e-10  Score=89.47  Aligned_cols=78  Identities=9%  Similarity=-0.076  Sum_probs=71.4

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK  481 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~  481 (496)
                      ....|..++++|+|.+|+..|+++++.-               +....+|.++|.|+.+++++.+|+.++++||+++|++
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   83 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKE---------------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD   83 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccc---------------cccchhhhhhhhhhhhhhhHHHhhccccccccccccc
Confidence            4567999999999999999999999983               3348999999999999999999999999999999999


Q ss_pred             cchhccccccccc
Q 011003          482 GSGIHSDGRFRFG  494 (496)
Q Consensus       482 ~Ka~~rrg~a~~~  494 (496)
                      ..+|+.+|.+|..
T Consensus        84 ~~a~~~la~~y~~   96 (112)
T d1hxia_          84 IAVHAALAVSHTN   96 (112)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHH
Confidence            9999999988764

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.83  E-value=9.7e-10  Score=88.13  Aligned_cols=87  Identities=23%  Similarity=0.505  Sum_probs=75.5

Q ss_pred             CCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCcccCCCCCCCCCCC
Q 011003           51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP  130 (496)
Q Consensus        51 ~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~  130 (496)
                      +.++.||.|.|+|+++. ||+.+.....  ..+.|.+|.+.+++||+++|.||++|+++.|.++....|.....     +
T Consensus        22 r~a~~gD~v~id~~~~~-dG~~~~~~~~--~~~~~~lg~~~~~~~f~~~L~G~k~Ge~~~~~~~~Ped~~~~~l-----a   93 (113)
T d1t11a3          22 EAAENGKRVSIDFVGSI-DGVEFEGGKA--ENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENL-----K   93 (113)
T ss_dssp             CCCCTTCEEEEEEEEES-SSSCCTTCEE--EEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTT-----S
T ss_pred             ccccCCCEEEEEEEEEE-CCEEccCCcc--ceEEEEeccccccccHHHhhcCCcCCCEEEEEEeCCCcCCcccc-----C
Confidence            35789999999999985 8988876543  57899999999999999999999999999999988888876654     6


Q ss_pred             CCceEEEEEEEEEee
Q 011003          131 NATLQFDVELLSWTS  145 (496)
Q Consensus       131 ~~~l~~~v~l~~~~~  145 (496)
                      |.++.|.|++.++..
T Consensus        94 Gk~~~f~v~v~~Ik~  108 (113)
T d1t11a3          94 GKAAKFAIKVNKVEA  108 (113)
T ss_dssp             SCEEEECCCEEEEEE
T ss_pred             CCeEEEEEEEEEEEe
Confidence            789999999998875

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.2e-09  Score=96.76  Aligned_cols=80  Identities=14%  Similarity=0.089  Sum_probs=68.6

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      .+.++..+|..++.+|+|..|+..|.++...                  ...++.|++.||+++|+|.+|+.+|++||++
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i~~~------------------~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l   65 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAVQDP------------------HSRICFNIGCMYTILKNMTEAEKAFTRSINR   65 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSSC------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhcCCC------------------CHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Confidence            4557778999999999999999999864221                  1346889999999999999999999999999


Q ss_pred             cCCCcchhcccccccccc
Q 011003          478 SVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       478 dp~~~Ka~~rrg~a~~~l  495 (496)
                      ||+++.||+.+|.++..+
T Consensus        66 dp~~~~a~~~~g~~~~~~   83 (192)
T d1hh8a_          66 DKHLAVAYFQRGMLYYQT   83 (192)
T ss_dssp             CTTCHHHHHHHHHHHHHT
T ss_pred             hhhhhhhHHHHHHHHHhh
Confidence            999999999999988654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=5.7e-09  Score=95.91  Aligned_cols=84  Identities=13%  Similarity=-0.043  Sum_probs=75.9

Q ss_pred             HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE  476 (496)
Q Consensus       397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~  476 (496)
                      ..+..+..+|..+++.|+|++|+..|++||++-+.               ...+|+|+|.||+++++|.+|+.++++||+
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~---------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   99 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD---------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLE   99 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC---------------CHHHHhhhchHHHHHHHHHHhhhhhhHHHH
Confidence            35677788999999999999999999999998443               377899999999999999999999999999


Q ss_pred             ccCCCcchhcccccccccc
Q 011003          477 SSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       477 ~dp~~~Ka~~rrg~a~~~l  495 (496)
                      ++|++..+|+++|.++..+
T Consensus       100 ~~p~~~~a~~~lg~~~~~~  118 (259)
T d1xnfa_         100 LDPTYNYAHLNRGIALYYG  118 (259)
T ss_dssp             HCTTCTHHHHHHHHHHHHT
T ss_pred             HHhhhhhhHHHHHHHHHHH
Confidence            9999999999999988654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.71  E-value=1.8e-08  Score=87.90  Aligned_cols=100  Identities=11%  Similarity=-0.031  Sum_probs=87.3

Q ss_pred             HHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccC-------CCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHH
Q 011003          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-------TSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAE  468 (496)
Q Consensus       396 ~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~-------~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai  468 (496)
                      +.....+...|+.++..|++.+|+..|.+|+.+....       ..+-..+...+.+....++.|++.+++++|+|.+|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            4567788999999999999999999999999986532       112335667888899999999999999999999999


Q ss_pred             HHHHHHhcccCCCcchhcccccccccc
Q 011003          469 KLCTKKCESSVQKGSGIHSDGRFRFGR  495 (496)
Q Consensus       469 ~~~~~al~~dp~~~Ka~~rrg~a~~~l  495 (496)
                      .+|+++|+++|.+..+|++++.+|..+
T Consensus        88 ~~~~~al~~~P~~e~~~~~l~~al~~~  114 (179)
T d2ff4a2          88 AELEALTFEHPYREPLWTQLITAYYLS  114 (179)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence            999999999999999999999888765

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.4e-08  Score=81.95  Aligned_cols=78  Identities=13%  Similarity=0.016  Sum_probs=68.9

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+...|+.+++.|+|.+|+..|.+++++-+.               ...+|.|+|.|+.++++|.+|+.++.++++++
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~  101 (117)
T d1elwa_          37 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD---------------WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE  101 (117)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             hhhhhcccccccccccccccchhhhhHHHhccc---------------hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            345667899999999999999999999998443               37789999999999999999999999999999


Q ss_pred             CCCcchhcccccc
Q 011003          479 VQKGSGIHSDGRF  491 (496)
Q Consensus       479 p~~~Ka~~rrg~a  491 (496)
                      |++..++..++++
T Consensus       102 p~~~~~~~~l~~l  114 (117)
T d1elwa_         102 ANNPQLKEGLQNM  114 (117)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            9999888776654

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=6.9e-08  Score=75.93  Aligned_cols=88  Identities=14%  Similarity=0.245  Sum_probs=71.7

Q ss_pred             CCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCCccCCccccccc
Q 011003          284 ERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQEL  363 (496)
Q Consensus       284 ~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~  363 (496)
                      .....||.|.|+|.+.. ||+.+..    .....+.|.+|.+.++++|+.+|.+|++||+..|.+.....|...      
T Consensus        13 r~a~~GD~v~id~~~~~-dG~~~~~----~~~~~~~~~lg~~~~~~gf~~~L~G~k~Ge~~~~~~~~P~d~~~~------   81 (106)
T d1l1pa_          13 GAVEAEDRVTIDFTGSV-DGEEFEG----GKASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAE------   81 (106)
T ss_dssp             SSCCTTEEEEEEEECCS-SSSCCST----TEEEEEEEEETTSCCCTTHHHHTTSCCTTCCEEEEECCCSSCCCT------
T ss_pred             ccccCCCEEEEEEEEEE-CCEECCC----CcccceEEEecCCCccchHHHHhcCCCCCceEEEEEEeCCCCCch------
Confidence            44577999999999875 7877643    245678899999999999999999999999999999876666432      


Q ss_pred             cCCCCCCeEEEEEEEeeeecc
Q 011003          364 AVVPPNSTVHYEVELVSFEKE  384 (496)
Q Consensus       364 ~~ip~~~~l~f~v~l~~~~~~  384 (496)
                        --.|..+.|+|+|.++.+.
T Consensus        82 --~laGK~v~f~V~v~~i~~~  100 (106)
T d1l1pa_          82 --NLKGKAAKFAINLKKVEER  100 (106)
T ss_dssp             --TTTTCCEEEEEEEEEEECC
T ss_pred             --hhCCCEEEEEEEEEEeccc
Confidence              3368899999999999853

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.49  E-value=4.9e-08  Score=84.01  Aligned_cols=80  Identities=16%  Similarity=0.044  Sum_probs=68.9

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      .+..+...|..+++.|+|.+|+..|++||++               ++....+|.|+|.||+++++|.+|+.++.+||++
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~---------------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI---------------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhh---------------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            3445566799999999999999999999998               3444788999999999999999999999999999


Q ss_pred             cCCCcchhccccccc
Q 011003          478 SVQKGSGIHSDGRFR  492 (496)
Q Consensus       478 dp~~~Ka~~rrg~a~  492 (496)
                      +|+|..++...++++
T Consensus       141 ~p~n~~~~~~l~~~~  155 (169)
T d1ihga1         141 APEDKAIQAELLKVK  155 (169)
T ss_dssp             CTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH
Confidence            999988776665543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.46  E-value=6e-08  Score=82.09  Aligned_cols=77  Identities=12%  Similarity=-0.007  Sum_probs=67.4

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp  479 (496)
                      .-+-..|..+++.++|.+|+..|++||++               ++....+|.++|.||.++++|.+|+.++.++++++|
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~---------------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P  132 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKI---------------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP  132 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccc---------------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            34457889999999999999999999998               444478999999999999999999999999999999


Q ss_pred             CCcchhcccccc
Q 011003          480 QKGSGIHSDGRF  491 (496)
Q Consensus       480 ~~~Ka~~rrg~a  491 (496)
                      +|..+....+.+
T Consensus       133 ~n~~~~~~l~~~  144 (153)
T d2fbna1         133 NNLDIRNSYELC  144 (153)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            999887655544

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=5.6e-08  Score=85.66  Aligned_cols=66  Identities=9%  Similarity=0.005  Sum_probs=60.0

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK  481 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~  481 (496)
                      +-..|+.+++.|+|++|+..|++|+++               ++....+|.|||.||.++++|.+|+.+|++||...+.|
T Consensus        39 ~~nlG~~~~~~g~~~~A~~~~~kAl~l---------------dp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          39 CFNIGCMYTILKNMTEAEKAFTRSINR---------------DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHcCCchhHHHHHHHHHHH---------------hhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccC
Confidence            567899999999999999999999998               44558999999999999999999999999999887765


Q ss_pred             c
Q 011003          482 G  482 (496)
Q Consensus       482 ~  482 (496)
                      .
T Consensus       104 ~  104 (192)
T d1hh8a_         104 Q  104 (192)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.43  E-value=1.8e-08  Score=84.62  Aligned_cols=75  Identities=11%  Similarity=0.015  Sum_probs=64.5

Q ss_pred             hhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhc----------cCHHHHHHHHHHH
Q 011003          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL----------KDYKQAEKLCTKK  474 (496)
Q Consensus       405 ~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl----------~~~~~Ai~~~~~a  474 (496)
                      .++.+-+.+.|++|+..|++|+++               ++....++.|++.|++.+          +.+++|+..+++|
T Consensus         3 ~~~~~~r~~~fe~A~~~~e~al~~---------------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kA   67 (145)
T d1zu2a1           3 TETEFDRILLFEQIRQDAENTYKS---------------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEA   67 (145)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHccHHHHHHHHHHHHhh---------------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            345566778899999999999998               445589999999999865          4468999999999


Q ss_pred             hcccCCCcchhccccccccc
Q 011003          475 CESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       475 l~~dp~~~Ka~~rrg~a~~~  494 (496)
                      |+++|++..|||++|.+|..
T Consensus        68 l~l~P~~~~a~~~lG~~y~~   87 (145)
T d1zu2a1          68 LLIDPKKDEAVWCIGNAYTS   87 (145)
T ss_dssp             HHHCTTCHHHHHHHHHHHHH
T ss_pred             HHhcchhhHHHhhHHHHHHH
Confidence            99999999999999998754

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1.1e-07  Score=91.14  Aligned_cols=80  Identities=15%  Similarity=0.037  Sum_probs=69.0

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .+...|+.+++.|+|.+|+..|+++++..+.               ...++.|+|.||.++|+|.+|+..+++||+++|+
T Consensus       307 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~  371 (388)
T d1w3ba_         307 SLNNLANIKREQGNIEEAVRLYRKALEVFPE---------------FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT  371 (388)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT---------------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred             hhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            3445677788888999999999998887332               3678999999999999999999999999999999


Q ss_pred             Ccchhcccccccccc
Q 011003          481 KGSGIHSDGRFRFGR  495 (496)
Q Consensus       481 ~~Ka~~rrg~a~~~l  495 (496)
                      ++.||+++|.+|..+
T Consensus       372 ~~~a~~~lg~~~~~~  386 (388)
T d1w3ba_         372 FADAYSNMGNTLKEM  386 (388)
T ss_dssp             CHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHc
Confidence            999999999998765

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.39  E-value=1.2e-07  Score=81.39  Aligned_cols=78  Identities=13%  Similarity=0.075  Sum_probs=67.9

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp  479 (496)
                      .-+...|..+++.++|.+|+..|++++++               ++....+|.|+|.||..+++|.+|+.++.++|+++|
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l---------------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P  129 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGL---------------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP  129 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhc---------------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            34456888899999999999999999998               344488999999999999999999999999999999


Q ss_pred             CCcchhccccccc
Q 011003          480 QKGSGIHSDGRFR  492 (496)
Q Consensus       480 ~~~Ka~~rrg~a~  492 (496)
                      +|..++..++.+.
T Consensus       130 ~n~~~~~~l~~~~  142 (168)
T d1kt1a1         130 QNKAARLQIFMCQ  142 (168)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            9988877666543

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.38  E-value=6.2e-08  Score=77.30  Aligned_cols=88  Identities=14%  Similarity=0.340  Sum_probs=71.6

Q ss_pred             CCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCCccCCccccccc
Q 011003          284 ERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQEL  363 (496)
Q Consensus       284 ~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~  363 (496)
                      ..+..||.|.|+|.++. ||..+..    .....+.|.+|.+.++++|+.+|.+|++||++.|.+.....|....     
T Consensus        22 r~a~~gD~v~id~~~~~-dG~~~~~----~~~~~~~~~lg~~~~~~~f~~~L~G~k~Ge~~~~~~~~Ped~~~~~-----   91 (113)
T d1t11a3          22 EAAENGKRVSIDFVGSI-DGVEFEG----GKAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAEN-----   91 (113)
T ss_dssp             CCCCTTCEEEEEEEEES-SSSCCTT----CEEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTT-----
T ss_pred             ccccCCCEEEEEEEEEE-CCEEccC----CccceEEEEeccccccccHHHhhcCCcCCCEEEEEEeCCCcCCccc-----
Confidence            34678999999999886 6777643    2456788999999999999999999999999998887666665322     


Q ss_pred             cCCCCCCeEEEEEEEeeeecc
Q 011003          364 AVVPPNSTVHYEVELVSFEKE  384 (496)
Q Consensus       364 ~~ip~~~~l~f~v~l~~~~~~  384 (496)
                         -.|.++.|+|+|.++...
T Consensus        92 ---laGk~~~f~v~v~~Ik~~  109 (113)
T d1t11a3          92 ---LKGKAAKFAIKVNKVEAR  109 (113)
T ss_dssp             ---TSSCEEEECCCEEEEEEE
T ss_pred             ---cCCCeEEEEEEEEEEEec
Confidence               267899999999998853

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=2.9e-07  Score=74.57  Aligned_cols=45  Identities=16%  Similarity=0.117  Sum_probs=40.1

Q ss_pred             HHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccc
Q 011003          446 LKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGR  490 (496)
Q Consensus       446 ~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~  490 (496)
                      ....++.|+|.||.++|+|.+|+.+++++|+++|+|..|+.-++.
T Consensus        70 ~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~  114 (122)
T d1nzna_          70 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL  114 (122)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence            345689999999999999999999999999999999998876654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.5e-07  Score=81.12  Aligned_cols=76  Identities=11%  Similarity=0.035  Sum_probs=67.1

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ  480 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~  480 (496)
                      .+...|..+++.|+|.+|+..|.+||++               ++....++.++|.||.++|+|.+|+.++.+|++++|+
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~---------------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~  128 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALEL---------------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN  128 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhc---------------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence            3445788899999999999999999998               4445889999999999999999999999999999999


Q ss_pred             Ccchhcccccc
Q 011003          481 KGSGIHSDGRF  491 (496)
Q Consensus       481 ~~Ka~~rrg~a  491 (496)
                      |..+....+.+
T Consensus       129 n~~~~~~l~~~  139 (170)
T d1p5qa1         129 NKAAKTQLAVC  139 (170)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            98887766554

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=6.7e-08  Score=92.73  Aligned_cols=78  Identities=10%  Similarity=0.100  Sum_probs=70.0

Q ss_pred             HHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCc
Q 011003          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKG  482 (496)
Q Consensus       403 k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~  482 (496)
                      -+.|+.+|+.|+|.+|+..|+++++..+.               ...++.++|.||+++++|++|+..++++++++|+++
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~   67 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQEPD---------------NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA   67 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            46789999999999999999999987433               367889999999999999999999999999999999


Q ss_pred             chhcccccccccc
Q 011003          483 SGIHSDGRFRFGR  495 (496)
Q Consensus       483 Ka~~rrg~a~~~l  495 (496)
                      .+|+++|.+|..+
T Consensus        68 ~a~~~l~~~~~~~   80 (388)
T d1w3ba_          68 EAYSNLGNVYKER   80 (388)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhh
Confidence            9999999887643

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1e-07  Score=90.35  Aligned_cols=77  Identities=12%  Similarity=-0.020  Sum_probs=69.9

Q ss_pred             HHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCc
Q 011003          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKG  482 (496)
Q Consensus       403 k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~  482 (496)
                      -++|..+++.|+|.+|+..|+++++.-               +....+|.++|.||.++++|.+|+..+++|++++|++.
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~~~---------------P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   87 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQQD---------------PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ   87 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccc
Confidence            468999999999999999999999983               33477899999999999999999999999999999999


Q ss_pred             chhccccccccc
Q 011003          483 SGIHSDGRFRFG  494 (496)
Q Consensus       483 Ka~~rrg~a~~~  494 (496)
                      .+|+++|.++..
T Consensus        88 ~~~~~la~~~~~   99 (323)
T d1fcha_          88 TALMALAVSFTN   99 (323)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             cccccccccccc
Confidence            999999987754

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2.2e-07  Score=78.83  Aligned_cols=78  Identities=10%  Similarity=0.049  Sum_probs=68.5

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+...|..+++.|++.+|+..|.+|+++               ++....+|.++|.|+..+|+|.+|+.++.++++++
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~kal~~---------------~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~  108 (159)
T d1a17a_          44 AIYYGNRSLAYLRTECYGYALGDATRAIEL---------------DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK  108 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hhhhhhhHHHHHhccccchHHHHHHHHHHH---------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            445567899999999999999999999998               44447889999999999999999999999999999


Q ss_pred             CCCcchhcccccc
Q 011003          479 VQKGSGIHSDGRF  491 (496)
Q Consensus       479 p~~~Ka~~rrg~a  491 (496)
                      |++..++...+++
T Consensus       109 p~~~~~~~~l~~~  121 (159)
T d1a17a_         109 PHDKDAKMKYQEC  121 (159)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            9999887765544

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.7e-07  Score=87.28  Aligned_cols=78  Identities=12%  Similarity=-0.044  Sum_probs=59.4

Q ss_pred             hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK  481 (496)
Q Consensus       402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~  481 (496)
                      +...|..++..|++.+|+..|++++..-+.               ...++.|+|.||+++|++.+|+..|+++|+++|++
T Consensus       175 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  239 (323)
T d1fcha_         175 QCGLGVLFNLSGEYDKAVDCFTAALSVRPN---------------DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY  239 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             chhhHHHHHHHHHHhhhhcccccccccccc---------------cccchhhhhhcccccccchhHHHHHHHHHHHhhcc
Confidence            345677788889999999999999887332               25667777888888888888888888888888888


Q ss_pred             cchhccccccccc
Q 011003          482 GSGIHSDGRFRFG  494 (496)
Q Consensus       482 ~Ka~~rrg~a~~~  494 (496)
                      +.+|+.+|.+|..
T Consensus       240 ~~a~~~lg~~~~~  252 (323)
T d1fcha_         240 IRSRYNLGISCIN  252 (323)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777777654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=9.4e-08  Score=77.54  Aligned_cols=78  Identities=9%  Similarity=0.069  Sum_probs=66.3

Q ss_pred             HHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhc---cCHHHHHHHHHHHhcccC
Q 011003          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL---KDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       403 k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl---~~~~~Ai~~~~~al~~dp  479 (496)
                      -+..|.++..++|.+|.+.|.+|+..-+               ....++.|+|.|+++.   +++.+|+..++++|+.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p---------------~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~   67 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGS---------------VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS   67 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSC---------------CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCC---------------CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccC
Confidence            3567889999999999999999999843               3488999999999974   456789999999999998


Q ss_pred             CC--cchhcccccccccc
Q 011003          480 QK--GSGIHSDGRFRFGR  495 (496)
Q Consensus       480 ~~--~Ka~~rrg~a~~~l  495 (496)
                      ++  +.+||..|.+|..+
T Consensus        68 ~~~~~~~~~~Lg~~y~~~   85 (122)
T d1nzna_          68 KEEQRDYVFYLAVGNYRL   85 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             CchHHHHHHHHHHHHHHH
Confidence            66  45999999998765

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=1.8e-07  Score=81.99  Aligned_cols=75  Identities=13%  Similarity=0.170  Sum_probs=64.3

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+-..|..+++.|+|.+|+..|++|+++               ++....+|.|+|.||+++++|.+|+.++.+||+++
T Consensus        38 ~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l---------------~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~  102 (201)
T d2c2la1          38 AVYYTNRALCYLKMQQPEQALADCRRALEL---------------DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA  102 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHhhhhhhhhhhHHHHHHHHh---------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            345567899999999999999999999998               33447789999999999999999999999999999


Q ss_pred             CCCcchhccc
Q 011003          479 VQKGSGIHSD  488 (496)
Q Consensus       479 p~~~Ka~~rr  488 (496)
                      |++...+...
T Consensus       103 p~~~~~~~~~  112 (201)
T d2c2la1         103 KEQRLNFGDD  112 (201)
T ss_dssp             HHTTCCCCSH
T ss_pred             cccHHHHHHH
Confidence            9776555443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1.9e-07  Score=88.85  Aligned_cols=49  Identities=8%  Similarity=-0.065  Sum_probs=39.0

Q ss_pred             HHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccccc
Q 011003          444 KALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFR  492 (496)
Q Consensus       444 ~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~  492 (496)
                      ++....+|+||+.|+.++++|.+|+.+|+++|++||+|..||+.||.++
T Consensus       142 dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l  190 (315)
T d2h6fa1         142 DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVI  190 (315)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHH
Confidence            4445777888888888888888888888888888888888888877654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=7.4e-07  Score=84.64  Aligned_cols=94  Identities=11%  Similarity=-0.044  Sum_probs=62.2

Q ss_pred             hhHHhhhhhHhcccHHHHHHHHHHHhhhhccC-------------CCCC-hHH------HHHHHHHHHHhhhHHHHHHHh
Q 011003          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-------------TSFG-DEE------KKQAKALKVACNLNNAACKLK  460 (496)
Q Consensus       401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~-------------~~~~-~~~------~~~~~~~~~~~~~N~a~~~~k  460 (496)
                      .+--.|..+-+.+++.+|+..|++||++-+..             ...+ ++.      ..++++....+|.||+.++.+
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~  124 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW  124 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHh
Confidence            33344666667777777777777777763221             0001 111      112344557778888888888


Q ss_pred             ccCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003          461 LKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       461 l~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~  494 (496)
                      ++++.+|+.+++++|+++|+|..+|+.+|.++..
T Consensus       125 l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~  158 (315)
T d2h6fa1         125 LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE  158 (315)
T ss_dssp             HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHH
Confidence            8888888888888888888888888888877653

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.07  E-value=2.3e-06  Score=72.11  Aligned_cols=82  Identities=16%  Similarity=0.084  Sum_probs=66.1

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      .+..+...|..+++.|+|.+|+..|++|+++++.......+.    .+....+|+|++.||.++|+|++|+.++++||++
T Consensus        54 ~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1          54 DAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE----GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc----cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455677889999999999999999999999876543332222    3344678999999999999999999999999999


Q ss_pred             cCCCcc
Q 011003          478 SVQKGS  483 (496)
Q Consensus       478 dp~~~K  483 (496)
                      .|...-
T Consensus       130 ~~~~~~  135 (156)
T d2hr2a1         130 IEERKG  135 (156)
T ss_dssp             HHHCCS
T ss_pred             hHHhhc
Confidence            875543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=2.6e-06  Score=77.40  Aligned_cols=78  Identities=12%  Similarity=-0.084  Sum_probs=67.0

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+...|..+++.|+|.+|+..|++|+++-+               ....++.|++.||..+++|.+|+..++++|+++
T Consensus        71 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~  135 (259)
T d1xnfa_          71 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP---------------TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD  135 (259)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh---------------hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence            34466789999999999999999999999833               336689999999999999999999999999999


Q ss_pred             CCCcchhcccccc
Q 011003          479 VQKGSGIHSDGRF  491 (496)
Q Consensus       479 p~~~Ka~~rrg~a  491 (496)
                      |++..+++..+.+
T Consensus       136 p~~~~~~~~~~~~  148 (259)
T d1xnfa_         136 PNDPFRSLWLYLA  148 (259)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             cccHHHHHHHHHH
Confidence            9998877665543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.71  E-value=5.5e-06  Score=76.26  Aligned_cols=73  Identities=11%  Similarity=0.017  Sum_probs=65.0

Q ss_pred             hhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcch
Q 011003          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSG  484 (496)
Q Consensus       405 ~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka  484 (496)
                      ++..++++|++.+|+..|+++++.               ++....++.+++.+++..|+|.+|+..++++++++|++..+
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~~---------------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~   66 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIKA---------------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   66 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHHT---------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHH
Confidence            466789999999999999999998               44448999999999999999999999999999999999988


Q ss_pred             hccccccc
Q 011003          485 IHSDGRFR  492 (496)
Q Consensus       485 ~~rrg~a~  492 (496)
                      +...+.++
T Consensus        67 ~~~l~~ll   74 (264)
T d1zbpa1          67 ASQLRHLV   74 (264)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87666554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.69  E-value=1.5e-05  Score=63.39  Aligned_cols=42  Identities=14%  Similarity=0.090  Sum_probs=37.9

Q ss_pred             HHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccc
Q 011003          447 KVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSD  488 (496)
Q Consensus       447 ~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rr  488 (496)
                      ...++.|+|.+|+++|+|.+|+..|+++|+++|+|..|..-+
T Consensus        72 ~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          72 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence            357899999999999999999999999999999998886533

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.68  E-value=8.7e-06  Score=67.63  Aligned_cols=66  Identities=9%  Similarity=0.047  Sum_probs=54.2

Q ss_pred             hcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhcc-----------CHHHHHHHHHHHhcccC
Q 011003          411 KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-----------DYKQAEKLCTKKCESSV  479 (496)
Q Consensus       411 k~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~-----------~~~~Ai~~~~~al~~dp  479 (496)
                      ..+.+++|+..|++|+++               ++....+|.|++.+|..++           +|.+|++++.+||+++|
T Consensus        53 ~~~~~~~Ai~~~~kAl~l---------------~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P  117 (145)
T d1zu2a1          53 AKQMIQEAITKFEEALLI---------------DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP  117 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHHh---------------cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCC
Confidence            346678999999999998               4455888999999998875           47999999999999999


Q ss_pred             CCcchhcccccc
Q 011003          480 QKGSGIHSDGRF  491 (496)
Q Consensus       480 ~~~Ka~~rrg~a  491 (496)
                      +|.-++...+.+
T Consensus       118 ~~~~~~~~L~~~  129 (145)
T d1zu2a1         118 DNTHYLKSLEMT  129 (145)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            998766655543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.60  E-value=2.4e-05  Score=61.63  Aligned_cols=62  Identities=13%  Similarity=-0.059  Sum_probs=55.5

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHh
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKC  475 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al  475 (496)
                      +..+...|..+++.+++.+|+..|++|+++               ++....++.|+|.||.++|++.+|++..++.|
T Consensus        50 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---------------~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          50 EEAWRSLGLTQAENEKDGLAIIALNHARML---------------DPKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhhhHHHhhccccccccc---------------ccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            455677899999999999999999999998               44448899999999999999999999999986

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.00011  Score=59.26  Aligned_cols=74  Identities=16%  Similarity=0.157  Sum_probs=61.9

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      +..+...|+.+++.|+|.+|+..|.+|+++-+....        .......+|.+++.++..+++|.+|+..+++++..+
T Consensus        38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~--------~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~  109 (128)
T d1elra_          38 MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE--------DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH  109 (128)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHH--------HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence            445677899999999999999999999998543321        134557889999999999999999999999999987


Q ss_pred             CC
Q 011003          479 VQ  480 (496)
Q Consensus       479 p~  480 (496)
                      ++
T Consensus       110 ~~  111 (128)
T d1elra_         110 RT  111 (128)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.51  E-value=4.4e-05  Score=70.87  Aligned_cols=92  Identities=11%  Similarity=-0.010  Sum_probs=70.2

Q ss_pred             hHHHHHH-HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHH
Q 011003          392 TEEKIEA-AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL  470 (496)
Q Consensus       392 ~~e~~~~-a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~  470 (496)
                      ...+.+. +.-+...||.+...++|.+|+..|.+|+++......         ......+|.|+|.||.++++|.+|+..
T Consensus        29 ~~~~~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~---------~~~~a~~~~~~g~~y~~~~~~~~A~~~   99 (290)
T d1qqea_          29 DSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGN---------EDEAGNTYVEAYKCFKSGGNSVNAVDS   99 (290)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC---------CHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            3444444 456777888888999999999999999998543211         234578999999999999999999999


Q ss_pred             HHHHhcccCCC------cchhccccccc
Q 011003          471 CTKKCESSVQK------GSGIHSDGRFR  492 (496)
Q Consensus       471 ~~~al~~dp~~------~Ka~~rrg~a~  492 (496)
                      +++++++.+.+      ..++.+.|.++
T Consensus       100 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~  127 (290)
T d1qqea_         100 LENAIQIFTHRGQFRRGANFKFELGEIL  127 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHhhhcccchhHHHHHHHHHHhH
Confidence            99999987655      44555655544

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=8.1e-05  Score=74.79  Aligned_cols=80  Identities=8%  Similarity=-0.103  Sum_probs=70.5

Q ss_pred             HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES  477 (496)
Q Consensus       398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~  477 (496)
                      ....+-..|..+..+++|.+|+..|.+|+++-+.               ....|+|+|.++.+.+++.+|+.++.+||.+
T Consensus       151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~---------------~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~  215 (497)
T d1ya0a1         151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS---------------NGQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            3445667899999999999999999999999444               3788999999999999999999999999999


Q ss_pred             cCCCcchhccccccc
Q 011003          478 SVQKGSGIHSDGRFR  492 (496)
Q Consensus       478 dp~~~Ka~~rrg~a~  492 (496)
                      +|.+..|+...++++
T Consensus       216 ~~~~~~a~~nL~~~~  230 (497)
T d1ya0a1         216 KFPFPAASTNLQKAL  230 (497)
T ss_dssp             SBCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH
Confidence            999999988877654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.18  E-value=0.00034  Score=64.57  Aligned_cols=75  Identities=29%  Similarity=0.275  Sum_probs=59.9

Q ss_pred             hhhHHhhhhhHh-cccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003          400 GKKKEQGNTLFK-AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS  478 (496)
Q Consensus       400 ~~~k~~Gn~~fk-~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d  478 (496)
                      ..+...|..++. .++|.+|+..|.+|+++......         ......++.|+|.++.++|+|.+|+..+++++...
T Consensus       118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~---------~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~  188 (290)
T d1qqea_         118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS---------VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS  188 (290)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc---------hhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhC
Confidence            344556666665 49999999999999998543211         34557789999999999999999999999999998


Q ss_pred             CCCcc
Q 011003          479 VQKGS  483 (496)
Q Consensus       479 p~~~K  483 (496)
                      +.+..
T Consensus       189 ~~~~~  193 (290)
T d1qqea_         189 MGNRL  193 (290)
T ss_dssp             SSCTT
T ss_pred             ccchh
Confidence            87754

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.00  E-value=0.00014  Score=68.55  Aligned_cols=71  Identities=4%  Similarity=-0.170  Sum_probs=56.2

Q ss_pred             hhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcch
Q 011003          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSG  484 (496)
Q Consensus       405 ~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka  484 (496)
                      .|+.+...+++.+|+..|.++++.               ++....++.++|.|+..++++++|+++|++|+++||++...
T Consensus       248 l~~~~~~~~~~~~a~~~~~~~~~~---------------~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y  312 (334)
T d1dcea1         248 SVEKSTVLQSELESCKELQELEPE---------------NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY  312 (334)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhh---------------CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHH
Confidence            444555566677777777766665               56668899999999999999999999999999999987776


Q ss_pred             hccccc
Q 011003          485 IHSDGR  490 (496)
Q Consensus       485 ~~rrg~  490 (496)
                      |...+.
T Consensus       313 ~~~L~~  318 (334)
T d1dcea1         313 LDDLRS  318 (334)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00013  Score=73.19  Aligned_cols=48  Identities=10%  Similarity=0.010  Sum_probs=43.9

Q ss_pred             HHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003          447 KVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       447 ~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~  494 (496)
                      ...++.|++.++..+++|.+|+.++.+|++++|++..+|+.+|.++..
T Consensus       151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~  198 (497)
T d1ya0a1         151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS  198 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            356889999999999999999999999999999999999999987743

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.76  E-value=0.001  Score=56.70  Aligned_cols=76  Identities=4%  Similarity=-0.087  Sum_probs=63.4

Q ss_pred             HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHH--
Q 011003          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKK--  474 (496)
Q Consensus       397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a--  474 (496)
                      .....+...++.+.+.|+|.+|+..+++++++               ++....+|.++..++.++|++.+|+..++++  
T Consensus        65 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~---------------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          65 DKVLAHTAKAEAEIACGRASAVIAELEALTFE---------------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh---------------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            34566778899999999999999999999998               5555889999999999999999999999887  


Q ss_pred             -----hcccCCC-cchhcc
Q 011003          475 -----CESSVQK-GSGIHS  487 (496)
Q Consensus       475 -----l~~dp~~-~Ka~~r  487 (496)
                           |.++|.. ..++|+
T Consensus       130 ~L~~eLG~~P~~~l~~l~~  148 (179)
T d2ff4a2         130 TLADDLGIDPGPTLRALNE  148 (179)
T ss_dssp             HHHHHHSCCCCHHHHHHHH
T ss_pred             HHHHHhCCCcCHHHHHHHH
Confidence                 6678763 334443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.0011  Score=61.30  Aligned_cols=72  Identities=7%  Similarity=-0.050  Sum_probs=58.5

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp  479 (496)
                      +-.--+|..++..|++++|+..|++|+...+...          ......++++++.||..+|+|.+|+..+.+++++.+
T Consensus        13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~----------~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~   82 (366)
T d1hz4a_          13 EFNALRAQVAINDGNPDEAERLAKLALEELPPGW----------FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMAR   82 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCC----------cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            3334468889999999999999999999754321          334567899999999999999999999999998866


Q ss_pred             CC
Q 011003          480 QK  481 (496)
Q Consensus       480 ~~  481 (496)
                      .+
T Consensus        83 ~~   84 (366)
T d1hz4a_          83 QH   84 (366)
T ss_dssp             HT
T ss_pred             hh
Confidence            44

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.30  E-value=0.0013  Score=61.45  Aligned_cols=96  Identities=6%  Similarity=-0.091  Sum_probs=65.7

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccC--------------CCCC-hHHHH------HHHHHHHH-hhhHHHH
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD--------------TSFG-DEEKK------QAKALKVA-CNLNNAA  456 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~--------------~~~~-~~~~~------~~~~~~~~-~~~N~a~  456 (496)
                      ...+...++.....+++.+|+..|+++++.-+.+              ...+ ++...      +.++.... .+.+++.
T Consensus        73 l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~  152 (334)
T d1dcea1          73 LQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFV  152 (334)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHH
Confidence            3455566777778888999999999988753321              1111 11111      11222233 3457778


Q ss_pred             HHHhccCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003          457 CKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG  494 (496)
Q Consensus       457 ~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~  494 (496)
                      ++...+++.+|+..++++++++|+|..+|+.+|.++..
T Consensus       153 ~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~  190 (334)
T d1dcea1         153 AAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ  190 (334)
T ss_dssp             HHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred             HHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            88889999999999999999999999999999887754

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=95.59  E-value=0.002  Score=59.29  Aligned_cols=36  Identities=6%  Similarity=-0.188  Sum_probs=26.1

Q ss_pred             HHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003          444 KALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV  479 (496)
Q Consensus       444 ~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp  479 (496)
                      .+....++.++|.+|.++|++.+|+..+.+||++.+
T Consensus       287 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         287 MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            344566777777788888888888888887777653

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.84  E-value=0.0095  Score=44.42  Aligned_cols=48  Identities=10%  Similarity=0.016  Sum_probs=37.7

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhc
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL  461 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl  461 (496)
                      +..+...|+.+++.|+|++|+..|++||++-               |....++.|++.....+
T Consensus        46 ~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~---------------P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          46 VSVLDYLSYAVYQQGDLDKALLLTKKLLELD---------------PEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHhcCChHHHHHHHHHHHHhC---------------cCCHHHHHHHHHHHHHh
Confidence            3455668999999999999999999999983               33367888887665444

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.90  E-value=0.079  Score=39.07  Aligned_cols=65  Identities=14%  Similarity=0.117  Sum_probs=47.1

Q ss_pred             HHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccC-CCCChHHHHHHHHHHHHhhhHHHHHH
Q 011003          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-TSFGDEEKKQAKALKVACNLNNAACK  458 (496)
Q Consensus       394 e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~N~a~~~  458 (496)
                      ..+..|..+-.++..+-+.|+|.+|+.+|.+|+++|... ....+....+.-..++.=|++||...
T Consensus        10 ~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~~~e~~~~~k~~l~~k~~eYl~RAE~L   75 (93)
T d1wfda_          10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENI   75 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            456778888999999999999999999999999987543 12223344444445566677777654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=93.31  E-value=0.048  Score=48.25  Aligned_cols=71  Identities=23%  Similarity=0.312  Sum_probs=51.5

Q ss_pred             hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHh----ccCHHHHHHHHHHHh
Q 011003          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----LKDYKQAEKLCTKKC  475 (496)
Q Consensus       400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~k----l~~~~~Ai~~~~~al  475 (496)
                      ..+-..|..+|.+++|.+|+..|++|.+.  .               ...++.|++.+|.+    .+++..|+..+.++.
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g---------------~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~   65 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDL--K---------------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC   65 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--T---------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHC--C---------------CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccc
Confidence            35667799999999999999999999875  1               14566778888876    667778877777766


Q ss_pred             cccCCCcchhcccc
Q 011003          476 ESSVQKGSGIHSDG  489 (496)
Q Consensus       476 ~~dp~~~Ka~~rrg  489 (496)
                      ...  +..|.+..|
T Consensus        66 ~~~--~~~a~~~l~   77 (265)
T d1ouva_          66 DLN--YSNGCHLLG   77 (265)
T ss_dssp             HTT--CHHHHHHHH
T ss_pred             ccc--ccchhhccc
Confidence            543  445544443

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.39  E-value=0.079  Score=37.55  Aligned_cols=65  Identities=23%  Similarity=0.224  Sum_probs=44.4

Q ss_pred             HHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCC--CCChHHHHHHHHHHHHhhhHHHHH
Q 011003          393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT--SFGDEEKKQAKALKVACNLNNAAC  457 (496)
Q Consensus       393 ~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~--~~~~~~~~~~~~~~~~~~~N~a~~  457 (496)
                      .+.++.|..+-.+|..+=+.|+|..|+.+|..|+.+|...-  +...+.....-..++.-|++||..
T Consensus         5 ~~~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~~~l~~e~~~~~~k~~l~~k~~~Yl~RAE~   71 (77)
T d1wr0a1           5 SPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEK   71 (77)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTGGGGHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            35677888888999999999999999999999999864321  111122222233445556677654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=89.74  E-value=0.36  Score=42.82  Aligned_cols=90  Identities=17%  Similarity=0.175  Sum_probs=62.9

Q ss_pred             HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCCh---------HHHHH-----------HHHHHHHhhhHHHHHH
Q 011003          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD---------EEKKQ-----------AKALKVACNLNNAACK  458 (496)
Q Consensus       399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~---------~~~~~-----------~~~~~~~~~~N~a~~~  458 (496)
                      +......|..++..|+|++|+..|++++++-+.......         ....+           .++.....+.+++.++
T Consensus        30 ~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~  109 (264)
T d1zbpa1          30 ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLS  109 (264)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHH
Confidence            344556788889999999999999999987432110000         00000           0122345567889999


Q ss_pred             HhccCHHHHHHHHHHHhcccCCCcchhccc
Q 011003          459 LKLKDYKQAEKLCTKKCESSVQKGSGIHSD  488 (496)
Q Consensus       459 ~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rr  488 (496)
                      ++.+++.+|+..+.+++++.|+..-.+..+
T Consensus       110 ~~~gd~~~A~~~~~~a~e~~p~~~~~~~~~  139 (264)
T d1zbpa1         110 MVSQDYEQVSELALQIEELRQEKGFLANDT  139 (264)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCCCCCEEETTE
T ss_pred             HhCCCHHHHHHHHHHHHhcCCCCCcccccc
Confidence            999999999999999999999887655443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=87.01  E-value=0.29  Score=38.21  Aligned_cols=61  Identities=15%  Similarity=0.024  Sum_probs=37.7

Q ss_pred             ccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHh----ccCHHHHHHHHHHHhcccCCCcchhccc
Q 011003          413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----LKDYKQAEKLCTKKCESSVQKGSGIHSD  488 (496)
Q Consensus       413 ~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~k----l~~~~~Ai~~~~~al~~dp~~~Ka~~rr  488 (496)
                      .++++|+..|++|.+.                 -....+.+++..|+.    ..++.+|++.+.++.+.  .++.|.++.
T Consensus        37 ~~~~~a~~~~~~aa~~-----------------g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~L   97 (133)
T d1klxa_          37 INKQKLFQYLSKACEL-----------------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLIL   97 (133)
T ss_dssp             SCHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             cCHHHHHHHHhhhhcc-----------------cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHH
Confidence            4566666666666543                 114445667777665    45677777777777654  466666666


Q ss_pred             cccc
Q 011003          489 GRFR  492 (496)
Q Consensus       489 g~a~  492 (496)
                      |..|
T Consensus        98 g~~y  101 (133)
T d1klxa_          98 GYKQ  101 (133)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.81  E-value=0.36  Score=33.78  Aligned_cols=40  Identities=25%  Similarity=0.407  Sum_probs=32.5

Q ss_pred             HHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCC
Q 011003          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF  435 (496)
Q Consensus       396 ~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~  435 (496)
                      +..|-..-.++..+.+.|+|++||.++.+|..++....+.
T Consensus         5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA~kl   44 (83)
T d2crba1           5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKL   44 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence            4455666678899999999999999999999998665443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.77  E-value=0.5  Score=42.46  Aligned_cols=77  Identities=9%  Similarity=-0.094  Sum_probs=41.3

Q ss_pred             hhhhHhcccHHHHHHHHHHHhhhhccCCC-------------CChH-------HHHHHHHHHHHhhhHHHHHHHhccCHH
Q 011003          406 GNTLFKAGKYARASKRYEKAVKYIEYDTS-------------FGDE-------EKKQAKALKVACNLNNAACKLKLKDYK  465 (496)
Q Consensus       406 Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~-------------~~~~-------~~~~~~~~~~~~~~N~a~~~~kl~~~~  465 (496)
                      ++...+.+++..|.+.|.+|++..+....             .+.+       ......+....++...+....+.|++.
T Consensus       141 ~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~  220 (308)
T d2onda1         141 MKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN  220 (308)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChH
Confidence            34444566777777777777765432210             0000       001112223455666666666777777


Q ss_pred             HHHHHHHHHhcccCCCc
Q 011003          466 QAEKLCTKKCESSVQKG  482 (496)
Q Consensus       466 ~Ai~~~~~al~~dp~~~  482 (496)
                      +|...+++|++..|.++
T Consensus       221 ~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         221 NTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHHHHHHHHHHSSSSCG
T ss_pred             HHHHHHHHHHHhCCCCh
Confidence            77777777777655443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=84.46  E-value=0.32  Score=42.48  Aligned_cols=63  Identities=22%  Similarity=0.280  Sum_probs=45.5

Q ss_pred             HhhhhhHh----cccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHh----ccCHHHHHHHHHHHh
Q 011003          404 EQGNTLFK----AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----LKDYKQAEKLCTKKC  475 (496)
Q Consensus       404 ~~Gn~~fk----~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~k----l~~~~~Ai~~~~~al  475 (496)
                      ..|..++.    .++++.|+..|++|.+.=                 ....+.|++.+|++    .+++.+|++.+.+|.
T Consensus       183 ~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g-----------------~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa  245 (265)
T d1ouva_         183 NAGNMYHHGEGATKNFKEALARYSKACELE-----------------NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGC  245 (265)
T ss_dssp             HHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-----------------CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHH
T ss_pred             chhhhcccCcccccchhhhhhhHhhhhccc-----------------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Confidence            34444444    567888999998887751                 15567789999987    568899999999998


Q ss_pred             cccCCCcc
Q 011003          476 ESSVQKGS  483 (496)
Q Consensus       476 ~~dp~~~K  483 (496)
                      ++....+.
T Consensus       246 ~~g~~~A~  253 (265)
T d1ouva_         246 KLGAKGAC  253 (265)
T ss_dssp             HHTCHHHH
T ss_pred             HCcCHHHH
Confidence            87654443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.13  E-value=0.99  Score=40.36  Aligned_cols=67  Identities=10%  Similarity=0.090  Sum_probs=39.6

Q ss_pred             hhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhc
Q 011003          407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIH  486 (496)
Q Consensus       407 n~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~  486 (496)
                      ....+.|++..|...|.+++...+..              ...++.+.+....+.+++..|+..+.++++..|.+...|.
T Consensus       107 ~~~~~~~~~~~a~~i~~~~l~~~~~~--------------~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~  172 (308)
T d2onda1         107 DYEESRMKYEKVHSIYNRLLAIEDID--------------PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV  172 (308)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTSSSSC--------------THHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHH
T ss_pred             HHHHhcccHHHHHHHHHHHHHHhcCC--------------hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHH
Confidence            33446777888888888888753321              0223455555555666666666666666666666555444


Q ss_pred             c
Q 011003          487 S  487 (496)
Q Consensus       487 r  487 (496)
                      .
T Consensus       173 ~  173 (308)
T d2onda1         173 T  173 (308)
T ss_dssp             H
T ss_pred             H
Confidence            3