Citrus Sinensis ID: 011021

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-----
Protein Sequence
MNILTELKIMDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVMFEEDHKFITVCYVLFDHQCVIVSTVQVL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEccccccHHHHHHHHHHHHHccccEEEEEEEccccccccccccccccccccEEEEEcEEEcccccccccccccEEEEEEEEEcHHHHHHHHHccccccEEEEEEcccccEEEEEccccEEEEEEEEEEcccEEEEEEcccEEEEEEEEccccccEEEEEcccccEEEEEEEEcccccHHHHHHHcccccccEEEEEcEEcccEEEEEcccEEEEEEcccccccccccccccccccccccccccccccccccccEEEcccccccccccEEEEEEEEcccccccEEEEEEcccccccHHHcccccccccccccccEEEccccccccHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHcccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccEEEccccccccccHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEEccccccHHHHHHHHHHHHHccccEEEEEEccccccccccccHEEEcccEEEEEEEEEEccccccccccHHHHEEEEEEEEEcHHHHHHHHHccccHHEEEEEEcccccEEEEEEcccEEEEEEEEccccccEEEEEcccEEEEEEEccccccccEEEEcccHHHEEEEEccccccccccccccccccccHHHHHccccccEEEEEcccEEEEEEEcccccccHHHHcccccEEEEEEcccccHHHccccccccccccHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEccccHHHHHHHHHHHccccccccEEEEEEEccccccHHHHHHHccccEEEEEEEEEc
Coil and Loop (DISEMBL)
MNILTELKIMDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVsfpildfdqnyffpgasrldygsfcvrkqnysFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFldvkgsapiVDRWIRLAVENGvreldfenitdentvytlpqaifSANSVTNLRLVWCRleqpfdsimlcsLKKLTLERVCLDEQMVQKLAsecplledlcfsncwglkhlCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLfygarrprvvevarsphlkkldlVSVYFADNEfnhliskfpsledlfvtrcclpgkikisSNQLKNLLFRSCKYlkvidvdapnlllftyefnpipiisinvpcpwkvsfvckgvlnthwYLKLKKFLGVSKQIESLKLSLYSTKvlynldelsecspslplqvenlelhtnvplsdyetLLDCVFWichprtlrvnvmfEEDHKFITVCYVLFDHQCVIVSTVQVL
Flexible Loop (DISEMBL)
mniltelkimdETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEvarsphlkklDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVMFEEDHKFITVCYVLFDHQCVIVSTVQVL
Low Complexity Region (SEG)
MNILTELKIMDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKimeirsfseeieiveisVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVMFEEDHKFITVCYVLFDHQCVIVSTVQVL
Disordered region (IsUnstruct)
***LTELKIMDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVMFEEDHKFITVCYVLFDHQCVIVSTV***
Disordered Region (DISOPRED)
*********************ELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVMFEEDHKFITVCYVLFDHQCVIVSTVQVL
Disordered Region (DISEMBL)
MNILTELKIMDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVMFEEDHKFITVCYVLFDHQCVIVSTVQVL
Disordered Region (DISPRO)
******L******VVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFP**********CVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVMFEEDHKFITVCYVLFDHQCVIVSTVQVL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNILTELKIMDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVMFEEDHKFITVCYVLFDHQCVIVSTVQVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	495	2.2.26 [Sep-21-2011]
Q9FJ30	540	Putative F-box/LRR-repeat	yes	no	0.440	0.403	0.296	3e-18
Q9LX48	491	Putative F-box/LRR-repeat	no	no	0.432	0.435	0.337	2e-16
Q9LXR6	457	Putative F-box protein At	no	no	0.452	0.490	0.322	1e-15
Q9LX51	520	F-box/LRR-repeat protein	no	no	0.414	0.394	0.321	2e-15
Q8H1M0	442	F-box/FBD/LRR-repeat prot	no	no	0.503	0.563	0.280	3e-15
Q9LX47	504	Putative F-box/FBD/LRR-re	no	no	0.397	0.390	0.318	3e-15
Q94B46	468	F-box/LRR-repeat protein	no	no	0.618	0.653	0.277	5e-15
Q8L7H1	381	F-box/LRR-repeat protein	no	no	0.614	0.797	0.278	8e-15
Q9LXJ6	456	F-box/FBD/LRR-repeat prot	no	no	0.412	0.447	0.311	1e-14
Q9FNI8	466	FBD-associated F-box prot	no	no	0.367	0.390	0.290	2e-14

>sp|Q9FJ30|FBL88_ARATH Putative F-box/LRR-repeat protein At5g41840 OS=Arabidopsis thaliana GN=At5g41840 PE=4 SV=1

 Score = 93.6 bits (231), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 128/263 (48%), Gaps = 45/263 (17%)

Query: 15  VAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQN-YFFPGASR 73
           V+ DRIS LP  +I H++S+L  KE A T+VL+K+W  L    P L+FD + YF P A R
Sbjct: 11  VSGDRISGLPDALICHILSFLPTKEAASTTVLAKRWKPLLAFVPNLNFDDSIYFHPRARR 70

Query: 74  LDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVD 133
             Y            S++ + FM FVD+ L    K K  +++F +     DV   + +++
Sbjct: 71  NKY------------SKSYESFMSFVDSVLALQAKTKTPLKRFHVKCE--DVVDQSWVLE 116

Query: 134 RWIRLAVENGVRELDFE-----NITDENTVYTLPQAIFSANSVTNLRL-----VWCRLEQ 183
            WI   ++ GV ++D       N  + ++ Y+LP  IF + ++  L++     V   +E 
Sbjct: 117 -WIPKVLKRGVLDIDLHITSSRNYCENSSFYSLPSKIFVSKTLVRLKIQFQDGVHIDVE- 174

Query: 184 PFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIM 243
               + L  LK L L+   ++  M+ KL S C  LE+L  +N                +M
Sbjct: 175 --GGVSLPKLKTLHLDYFKIETSMLNKLLSGCHALEELVLAN----------------LM 216

Query: 244 EIRSFSEEIEIVEISVPSLQQLT 266
              S  +E   V +S+P+L++L 
Sbjct: 217 WADSSEDEACHVSVSIPTLKRLN 239

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX48|FBL66_ARATH Putative F-box/LRR-repeat protein At3g59230 OS=Arabidopsis thaliana GN=At3g59230 PE=4 SV=1

 Score = 87.4 bits (215), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/243 (33%), Positives = 111/243 (45%), Gaps = 29/243 (11%)

Query: 18  DRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYG 77
           D I+ LP  +I+H++S+LS KE A TS+LS+KW   +   P LDFD     P   + D G
Sbjct: 12  DIINSLPEALIYHILSFLSTKEAAITSLLSRKWRYFFAFVPNLDFDD----PVRMQPDMG 67

Query: 78  SFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIR 137
                  N   +E    FMDFVD  L    +    + KF L      V G    V RWI 
Sbjct: 68  -------NQEETEIHTSFMDFVDRVLA--LRGNSHVNKFSLKCGN-GVDGVG--VTRWIL 115

Query: 138 LAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLR------LVWCRLEQPFDSIMLC 191
             +E  V ELD    +D  T Y  P  +F + S+  LR      L +  L      + L 
Sbjct: 116 NTLELSVSELDLSIASD--TTYLFPSKVFVSKSLVRLRIEARNGLAFGSLVIDVGDVSLP 173

Query: 192 SLKKLTLERVCLDEQMV--QKLASECPLLEDLCFSN-CWGLKHLCVSKASKLKIMEIRSF 248
            LK L L+ V LD Q++   KL S C +LE+L   +  W     C +    LK +    F
Sbjct: 174 KLKTLYLDSVELDYQIICLAKLLSGCHVLEELVMIDVVWNFWESCSASIPTLKRLTF--F 231

Query: 249 SEE 251
           +EE
Sbjct: 232 TEE 234

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXR6|FB207_ARATH Putative F-box protein At3g58860 OS=Arabidopsis thaliana GN=At3g58860 PE=4 SV=1

 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 117/251 (46%), Gaps = 27/251 (10%)

Query: 17  MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDF-DQNYFFPGASRLD 75
           MD  S+LP  +I H++S L  KE A TSVL+KKW  L+   P LDF D ++  P   + +
Sbjct: 6   MDLFSKLPDEVISHILSSLPTKEAASTSVLAKKWRYLFAFVPSLDFNDSDFLHPQEGKRE 65

Query: 76  YGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVK-GSAPI-VD 133
                           ++ FMDFVD  L    +    I+KF      L+VK G  P  VD
Sbjct: 66  KDGI------------LRSFMDFVDRVLA--LQGASPIKKFS-----LNVKTGVDPDRVD 106

Query: 134 RWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVW-CRLEQPFDSIMLCS 192
           RWI   ++ GV  L      D    Y+LP  I  + ++  L+  +   L    D + L  
Sbjct: 107 RWICNVLQRGVSHLAL--FMDFEEEYSLPYEISVSKTLVELKTGYGVDLYLWDDDMFLPM 164

Query: 193 LKKLTLERVCLDEQMVQKLASECPLLEDLCFSNC-WGLKHLCVSKASKLKIMEIRSFSEE 251
           LK L LE V       Q L   CP+LE+L   N  W  +++ +S +S LK ++I S    
Sbjct: 165 LKTLVLESVEFGRGQFQTLLPACPVLEELMLLNMEWKDRNVILS-SSSLKNLKITSEDGC 223

Query: 252 IEIVEISVPSL 262
           +  +    P+L
Sbjct: 224 LGTLSFDTPNL 234

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX51|FBL64_ARATH F-box/LRR-repeat protein At3g59200 OS=Arabidopsis thaliana GN=At3g59200 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 104/233 (44%), Gaps = 28/233 (12%)

Query: 15  VAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRL 74
           V+ DRIS LP  ++ H++S+L  KE A TSVLSKKW  L+     LDFD + +  G  + 
Sbjct: 4   VSRDRISSLPNPVVSHILSFLPTKEAASTSVLSKKWRYLFAYVTNLDFDDSDYQDGKPKS 63

Query: 75  DYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDR 134
           D              E  + FM+FVD  L    +    + KF L  +  DV  +   V  
Sbjct: 64  DV-------------ELSRSFMEFVDRVLA--LQGNGSVNKFSLECSNYDVDLAR--VTG 106

Query: 135 WIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCR---LEQPFDSIMLC 191
           WI   +  GV ELD   +      Y LP  IF + ++  L+L       L      + L 
Sbjct: 107 WILNVLGRGVSELDLSILE-----YPLPSEIFVSKTLVRLKLGPANDLTLTLDRKDVFLP 161

Query: 192 SLKKLTLERVCLDEQMVQ--KLASECPLLEDLCFSN-CWGLKHLCVSKASKLK 241
            LK L ++ V + E+     KL S CP+LE+L   N  W     C      LK
Sbjct: 162 KLKTLYIDCVDVQERGFGFVKLLSGCPVLEELVLMNIGWENWKFCSVSVKTLK 214

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1M0|FDL16_ARATH F-box/FBD/LRR-repeat protein At2g26030 OS=Arabidopsis thaliana GN=At2g26030 PE=2 SV=2

 Score = 83.6 bits (205), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 137/296 (46%), Gaps = 47/296 (15%)

Query: 18  DRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYG 77
           DRI ELP  ++  ++SYL   +  +TSVLSK+W  L++  P+LD   +  FP     +Y 
Sbjct: 4   DRICELPDSLLTQVLSYLPTIDSVKTSVLSKRWEFLWLRVPVLDLKVSD-FPDE---NYA 59

Query: 78  SFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIR 137
           SF            +  F++F   S +R  KLK+   ++    T+ D + +      W+ 
Sbjct: 60  SF------------IDNFLEFNRKSRMRKFKLKY--DEY----TYDDDRLAG-----WVV 96

Query: 138 LAVENGVRELDFENITDENTVYT-LPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKL 196
             V+ G++ LD +       V   +PQ I+  N++ +L LV   +E P   + L SLK +
Sbjct: 97  TTVDRGIQHLDAKGFETNMCVREFMPQNIYKCNTLVSLMLVTVGIENPEFVVSLPSLKIM 156

Query: 197 TLERVCL--DEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEI 254
            LE V    D  +++K+ S CP+LED          +L V +  +++ + +RSF    E 
Sbjct: 157 HLEDVWYYDDPLIMEKIISGCPVLEDFVLIRPIDFCNLDVLQFLRVRSLSLRSFRLTFEY 216

Query: 255 --------VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFN 302
                   VEI  P L+ L    +   +   + V     L  +D+      D+EFN
Sbjct: 217 SVSCTYFSVEIDAPRLEYLN---FNDDQSDTIVVKNMTSLSMIDI------DSEFN 263

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX47|FDL46_ARATH Putative F-box/FBD/LRR-repeat protein At3g59240 OS=Arabidopsis thaliana GN=At3g59240 PE=4 SV=1

 Score = 83.6 bits (205), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 115/245 (46%), Gaps = 48/245 (19%)

Query: 10  MDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFP 69
           MD+ +   D IS+LP  +I HL+S++  KE A TS+LS+KW  L+   PILDFD + +  
Sbjct: 1   MDD-ICCKDIISDLPEALICHLLSFVPTKEAALTSLLSEKWRYLFAFAPILDFDDSVWM- 58

Query: 70  GASRLDYGSFCVRKQNYSFSETVKKFMDFVD--------ASLVRFC-KLKFCIQKFRLFL 120
             S L Y            +E  +KFMDFVD        ++LVRF    +  I +  +F 
Sbjct: 59  -QSPLVY-----------MNEVHRKFMDFVDRVLGLQGNSTLVRFSLNCRNGIDRECIF- 105

Query: 121 TFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCR 180
                        RWI   +E GV +LD       N   ++P ++F + S+  LR+   R
Sbjct: 106 -------------RWISNVIERGVSDLDLGGNFVSNR--SMPSSVFVSKSLVKLRI---R 147

Query: 181 LEQ----PFDSIMLCSLKKLTLERVCL--DEQMVQKLASECPLLEDLCFSNCWGLKHLCV 234
            E       + + L  LK L L  +     +  + KL S C +LEDL  S+ W   +   
Sbjct: 148 TENCTIIDLEDVFLPKLKTLDLSSIWFRDGDTCLLKLISGCQVLEDLTMSDLWWDGYWNR 207

Query: 235 SKASK 239
           S +SK
Sbjct: 208 SMSSK 212

Arabidopsis thaliana (taxid: 3702)

>sp|Q94B46|FBL74_ARATH F-box/LRR-repeat protein At4g14096 OS=Arabidopsis thaliana GN=At4g14096 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 153/357 (42%), Gaps = 51/357 (14%)

Query: 18  DRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYG 77
           D IS LP  I  H++S+L  KE A TSVLSKKW  L+   P LD D++ +    +     
Sbjct: 8   DIISSLPEAISCHILSFLPTKEAASTSVLSKKWRYLFAFVPNLDLDESVYLNPENE---- 63

Query: 78  SFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDR--- 134
                      +E    FMDFVD  L    +    + KF L +      G     DR   
Sbjct: 64  -----------TEVSSSFMDFVDRVLA--LQGNSPLHKFSLKI------GDGVEPDRIIP 104

Query: 135 WIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLK 194
           WI   +E GV +LD     +  T +  P  +F + ++  L+L+   L + F+ + L  LK
Sbjct: 105 WINNVLERGVSDLDLHVYME--TEFVFPSEMFLSKTLVRLKLMLYPLLE-FEDVYLPKLK 161

Query: 195 KLTLERVCLDEQMVQ--KLASECPLLEDLCFSN----CWGLKHLCVSKASKLKI-MEIRS 247
            L ++    ++  +   KL S CP+LEDL   +     W    + V    +L    ++R 
Sbjct: 162 TLYIDSCYFEKYGIGLTKLLSGCPILEDLVLDDIPWCTWDFASVSVPTLKRLTFSTQVR- 220

Query: 248 FSEEIEIVEISVPSLQQLTLL-FYGARRPRV-VEVARSPHLKKLDLVSVYFADNEFNHLI 305
             E  + V I  P+L  L        + P+V  +     H+  L L+  +    E N ++
Sbjct: 221 -DEFPKSVSIDTPNLVYLKFTDTVAGKYPKVNFDSLVEAHI-DLRLLQGHQGYGE-NDMV 277

Query: 306 SKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNP 362
                    F+ R C    + +SSN L+ L + SC  + + +    NL   T E NP
Sbjct: 278 GNATD----FIMRICNVKTLYLSSNTLQVLTY-SCDAIPIFN----NLTHLTIESNP 325

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L7H1|FBL75_ARATH F-box/LRR-repeat protein At4g14103 OS=Arabidopsis thaliana GN=At4g14103 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 153/370 (41%), Gaps = 66/370 (17%)

Query: 16  AMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLD 75
           + D IS LP  I  H++S+L  KE A TSVLSKKW  L+   P LD D + +    +   
Sbjct: 6   SRDVISSLPDDISSHILSFLPTKEAASTSVLSKKWRYLFAFVPNLDLDDSVYLNPENE-- 63

Query: 76  YGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPI-VDR 134
                        +E    FMDFVD  L    +    + KF L +      G  P+ +  
Sbjct: 64  -------------TEISTSFMDFVDRVLA--LQGNSPLHKFSLKIG----DGIDPVRIIP 104

Query: 135 WIRLAVENGVRELDFE-NITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF------DS 187
           WI   +E GV +LD   N+  E   + LP  ++   +     LVW +L          + 
Sbjct: 105 WINNVLERGVSDLDLHLNLESE---FLLPSQVYLCKT-----LVWLKLRFGLYPTIDVED 156

Query: 188 IMLCSLKKLTLERVCLDEQMVQ--KLASECPLLEDLCFSN----CWGLKHLCVSKASKLK 241
           + L  LK L +E    +E  V   KL S CP+LEDL   +     W    + V    +L+
Sbjct: 157 VHLPKLKTLYIEATHFEEHGVGLTKLLSGCPMLEDLVLDDISWFIWDFASVSVPTLKRLR 216

Query: 242 IMEIRSFSEEIEI---VEISVPSLQQLTLL-FYGARRPRV-----VEVARSPHLKKLDLV 292
                S+ E  E    V +  P+L  L        + P+V     VE      L K  L+
Sbjct: 217 F----SWQERDEFPKSVLLDTPNLVYLKFTDTVAGKYPKVNLDSLVEAHIDLRLLKPLLI 272

Query: 293 SVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPN 352
           + +    E N ++         F+ R C    + +S+N L+ L + SC  + + +    N
Sbjct: 273 NYHQGYGE-NDMVGNATD----FIMRICNVKTLYLSANTLQVLTY-SCDAIPIFN----N 322

Query: 353 LLLFTYEFNP 362
           L   T E NP
Sbjct: 323 LTHLTIESNP 332

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXJ6|FDL21_ARATH F-box/FBD/LRR-repeat protein At3g52680 OS=Arabidopsis thaliana GN=At3g52680 PE=2 SV=2

 Score = 81.3 bits (199), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 119/260 (45%), Gaps = 56/260 (21%)

Query: 14  VVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASR 73
           V+  DRISELP  ++  ++S L    V  TSVLSK+W  L+   P L+FD +        
Sbjct: 17  VMGKDRISELPDGLLLKILSSLPTNIVVATSVLSKQWRSLWKLVPNLEFDSD-------- 68

Query: 74  LDYGSFCVRKQNYSFSETV-KKFMDFVDASLVRFCKLKFCIQKFRL-FLTFLDVKGSAPI 131
            DY S     ++Y+FSE V K F+      L          + FRL F+ F  V      
Sbjct: 69  -DYES-----EHYTFSEIVCKSFLSHKAPVL----------ESFRLKFVNFNPVD----- 107

Query: 132 VDRWIRLAVENGVRE--LDFENIT-DENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSI 188
           +  W+ +A    +RE  LDF      +   +T P ++ + N++  L+LV C L      +
Sbjct: 108 IGLWVGIAFSRHLRELVLDFYPAELGKGVTFTFPSSLCTCNTLETLKLVLCILVDIPSPV 167

Query: 189 MLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRS 247
           ++ SL+ L LE V   DE  V+ L S CP LE+L                        R 
Sbjct: 168 LMKSLRTLHLEFVRYKDESSVRNLLSGCPGLEELRL---------------------YRG 206

Query: 248 FSEEIEIVEISVPSLQQLTL 267
              +I++  I VPSLQ+LT+
Sbjct: 207 DDSDIKVFTIEVPSLQRLTI 226

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNI8|FBD32_ARATH FBD-associated F-box protein At5g22730 OS=Arabidopsis thaliana GN=At5g22730 PE=2 SV=2

 Score = 81.3 bits (199), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 102/210 (48%), Gaps = 28/210 (13%)

Query: 14  VVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASR 73
           +   D IS+LP  +I  ++ YL  K++ RTS LS +W  L++  P LD D   F      
Sbjct: 24  MAGEDLISKLPDSLITQILLYLPIKDIVRTSSLSSRWKSLWLLIPRLDLDSEEF------ 77

Query: 74  LDYGSFCVRKQNY-SFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIV 132
                     Q+Y +F   + KF+DF           K C+ K +  L+        P V
Sbjct: 78  ----------QDYNAFVGFMNKFIDFSGEE-------KICLDKLK--LSSRKTVNDLPCV 118

Query: 133 DRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCS 192
            RWI   V   ++ LD E + +   +  +P +++  +++ NLRL    L + F+++ L  
Sbjct: 119 TRWIDFVVRRKLKHLDVECLVNRKFLEEMPLSLYVCDTLVNLRLHRVLLGK-FEAVSLPC 177

Query: 193 LKKLTLER-VCLDEQMVQKLASECPLLEDL 221
           LK + LE  V  ++ +++ L S CP+L+DL
Sbjct: 178 LKTMRLEENVYANDVVLESLISSCPVLKDL 207

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	495
224121624	528	predicted protein [Populus trichocarpa]	0.901	0.844	0.359	3e-66
449458247	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.864	0.912	0.304	6e-45
449476923	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.864	0.912	0.302	1e-44
224119688	563	f-box family protein [Populus trichocarp	0.901	0.792	0.309	2e-40
356557323	833	PREDICTED: uncharacterized protein LOC10	0.913	0.542	0.308	9e-39
297743071	552	unnamed protein product [Vitis vinifera]	0.894	0.802	0.316	2e-37
225442254	520	PREDICTED: putative F-box protein At3g44	0.894	0.851	0.316	3e-37
255590973	337	conserved hypothetical protein [Ricinus	0.535	0.786	0.366	4e-36
449458245	575	PREDICTED: uncharacterized protein LOC10	0.860	0.740	0.303	1e-35
449476919	575	PREDICTED: uncharacterized protein LOC10	0.860	0.740	0.301	1e-35

>gi|224121624|ref|XP_002330747.1| predicted protein [Populus trichocarpa] gi|222872523|gb|EEF09654.1| predicted protein [Populus trichocarpa]

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 167/465 (35%), Positives = 258/465 (55%), Gaps = 19/465 (4%)

Query: 17  MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDY 76
           MD IS  P  ++HH++S+L  K+V RTS+LSK+W  +  ++PILDF        +S   Y
Sbjct: 1   MDHISRFPDGVLHHILSFLPTKDVLRTSILSKRWKLVLDTYPILDFSWGDCAGQSSDAMY 60

Query: 77  GSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWI 136
                   +  + + + KFM++VD S+ RFCK KF +QKF+LFL   D++ S+ + D+W+
Sbjct: 61  S----ENASDEYRQMLTKFMNYVDTSIFRFCKYKFSMQKFKLFLVLPDLELSSHL-DKWV 115

Query: 137 RLAVENGVRELDFE----NITDENTVYTLPQAIFSANSVTNLRLVWC--RLEQPFDSIML 190
           +  +ENG +E+DF             Y++P AIF+A SVT L+L  C  +LE+ F  I L
Sbjct: 116 QKVIENGAKEVDFGIDLPGYLHFKKPYSMPDAIFAAKSVTVLKLFGCNVKLEESF-CIKL 174

Query: 191 CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSE 250
            SL+KL L+ V +D+ +++++ + CPLLED+    CWGLK + V +  +LK  EI S   
Sbjct: 175 HSLQKLALKEVQMDDHLLRRIVTCCPLLEDISLRFCWGLKKIQVFELLRLKKFEIYSHLS 234

Query: 251 EIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPS 310
           + E VEI  PSL+     F       +V V     LK L L   +  +     L+ KF  
Sbjct: 235 KPESVEIKSPSLESFHCSFTVRSVKPIVSVDACQGLKSLILSGSFVTELLLQDLVPKFHV 294

Query: 311 LEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINV 370
           LE L V  C +  K+KISS +LK+L   SC+ +  I+++ PNLL   Y  + +P+  IN 
Sbjct: 295 LESLRVGDCPVLKKVKISSWRLKSLEIHSCENIMDIEINTPNLLSCKYCGSVVPVSLINA 354

Query: 371 P-CPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVL--YNLDELSECSPS 427
           P C W+V F     L+  WY+ LK+FL    Q+  L + +Y T ++   NL++LS  +  
Sbjct: 355 PSCHWQVEFSLMNTLDILWYMTLKEFLAKLNQLVYLHVYVYLTTIMSSLNLEDLSNNAS- 413

Query: 428 LPLQVEN--LELHTNVPLSDYETLLDCVFWICHPRTLRVNVMFEE 470
            P  V+N  L +H+  P+  Y   +D +F+   P+ L +    E+
Sbjct: 414 -PYVVDNVVLTVHSASPIMTYANFMDGLFFFSRPKNLFIRSTDEQ 457

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458247|ref|XP_004146859.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 139/456 (30%), Positives = 237/456 (51%), Gaps = 28/456 (6%)

Query: 17  MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDY 76
           MD ISELP  I+ H++S+LS K++ +T++LSK+W  L+++FP  +FD+N FF   S+L  
Sbjct: 1   MDLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKN-FFHIESKL-- 57

Query: 77  GSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWI 136
                  QN  F       ++FV+ +L +   LK C++KF+L   F +   S  +VDRWI
Sbjct: 58  -------QNKRF-----HLINFVEQTLKQ---LK-CLRKFKLHTDFPE-PNSMVVVDRWI 100

Query: 137 RLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKL 196
              +E+GV+EL+     +    Y LPQ +F+  S+T L +  C+L    D   L S+K +
Sbjct: 101 DYVLESGVQELEIVVTVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLDGYKLLSMKSV 160

Query: 197 TLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVE 256
           +L  V  +++ V++L S CP ++ +   +C GL+ L + + ++L  ME+++ S    + E
Sbjct: 161 SLLGVFAEDETVKRLVSNCPFIQHIKLDSCLGLRSLWLCETNELITMEVQNNS---GLYE 217

Query: 257 ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFV 316
               ++      F G  +P  + ++   +LK L L  V   D+ FN   S+FP LE L +
Sbjct: 218 FGTKAMNLQAFEFRGQFQPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILAL 277

Query: 317 TRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKV 376
           + C +   ++ISS+ LK  +   C+ +  +D+DAP L    +  + I   S+N P   + 
Sbjct: 278 SYCHMLESLRISSSHLKKFILCGCESVTRVDIDAPCLSGLEFSGDVIS-FSLNAPALSQA 336

Query: 377 SF-VCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENL 435
              +   + +  W +K  +FL     ++SL L   + K +    EL E   S    V++L
Sbjct: 337 DIELSPRIFDNPWVVKQIEFLAHFNHLKSLTLQSQTGKSVVIPQELRETFGSPLYGVKHL 396

Query: 436 ELHTNVPL--SDYETLLDCVFWIC-HPRTLRVNVMF 468
           +L    PL     + L+  + WI   P+T+ V   F
Sbjct: 397 KLRIIKPLFSPSLKDLVKALLWIAPQPQTIAVESGF 432

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476923|ref|XP_004154877.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 138/456 (30%), Positives = 237/456 (51%), Gaps = 28/456 (6%)

Query: 17  MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDY 76
           MD ISELP  I+ H++S+LS K++ +T++LSK+W  L+++FP  +FD+N FF   S+L  
Sbjct: 1   MDLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKN-FFHIESKL-- 57

Query: 77  GSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWI 136
                  QN  F       ++FV+ +L +   LK C++KF+L   F +   S  +VDRWI
Sbjct: 58  -------QNKRF-----HLINFVEQTLKQ---LK-CLRKFKLHTDFPE-PNSMVVVDRWI 100

Query: 137 RLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKL 196
              +E+GV+EL+     +    Y LPQ +F+  S+T L +  C+L    D   L S+K +
Sbjct: 101 DYVLESGVQELEIVVTVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLDGYKLLSMKSV 160

Query: 197 TLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVE 256
           +L  V  +++ V++L S CP ++ +   +C GL++L + + ++L  ME+++ S    + E
Sbjct: 161 SLLGVFAEDETVKRLVSNCPFIQHIKLDSCLGLRNLWLCETNELITMEVQNNS---GLYE 217

Query: 257 ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFV 316
               ++      F G  +P  + ++   +LK L L  V   D+ FN   S+FP LE L +
Sbjct: 218 FGTKAMNLQAFEFRGQFQPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILAL 277

Query: 317 TRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKV 376
           + C +   ++ISS+ LK  +   C+ +  +D+D P L    +  + I   S+N P   + 
Sbjct: 278 SYCHMLESLRISSSHLKKFILCGCESVTRVDIDTPCLSGLEFSGDVIS-FSLNAPALSQA 336

Query: 377 SF-VCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENL 435
              +   + +  W +K  +FL     ++SL L   + K +    EL E   S    V++L
Sbjct: 337 DIELSPRIFDNPWVVKQIEFLAHFNHLKSLTLQSQTGKSVVIPQELRETFGSPLYGVKHL 396

Query: 436 ELHTNVPL--SDYETLLDCVFWIC-HPRTLRVNVMF 468
           +L    PL     + L+  + WI   P+T+ V   F
Sbjct: 397 KLRIIKPLFSPSLKDLVKALLWIAPQPQTIAVESGF 432

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119688|ref|XP_002318135.1| f-box family protein [Populus trichocarpa] gi|222858808|gb|EEE96355.1| f-box family protein [Populus trichocarpa]

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 152/491 (30%), Positives = 245/491 (49%), Gaps = 45/491 (9%)

Query: 10  MDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFP 69
           M   V A DRIS LP  ++H+++SYLS + V R SVLSK W+++  SFP+ DF ++    
Sbjct: 27  MGIRVDASDRISRLPDHVLHYILSYLSIRAVVRFSVLSKTWHRISTSFPVSDFSEDVLLL 86

Query: 70  GASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSA 129
           G             + Y   +   KF+DFV  SL+          KFRL    +D+    
Sbjct: 87  G-------------KRYEIQDWKNKFIDFVQDSLLAQHHHNTRSHKFRL---SMDLDSYD 130

Query: 130 PIV----DRWIRLAVENGVRELD--FENITDENTVYTLPQAIFSANSVTNLRLVW-CRLE 182
           P +    D  + LA + GV E D  F+NI+     Y LP+A+ SA  +T LRL    +L 
Sbjct: 131 PQLTSRADHLLELATKCGVYEFDLNFQNISH----YCLPRALLSAEEITVLRLNGNYKLS 186

Query: 183 QPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKI 242
            P D+I   SL+ L+L  V +DE ++Q L   CPL+E L    C+G+K + +S   KLK 
Sbjct: 187 LPRDAINWPSLRVLSLMNVRVDEAILQNLICGCPLIEKLALVYCYGVKSIRISGCIKLKE 246

Query: 243 MEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVA--RSPHLKKLDLVSVYFADNE 300
           +E+      +E +EI VPSL+         +    +++   R+  L KL   ++     +
Sbjct: 247 VEVNEGDSVLERMEIHVPSLRTFCYTTGLVKSFFHIDMTGCRNLELLKLKFYNITEVIGQ 306

Query: 301 -FNHLISKFPSLEDLFVT-RCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTY 358
            F  LI++FP+L+ L +        +IKIS+ QL+ L   S    KV  + +P+L  F +
Sbjct: 307 VFQDLIAQFPALKVLALNCYATSVSRIKISNPQLEKLQLWSSALTKVT-ITSPSLHSFKH 365

Query: 359 EFNPIP-IISINVPCPWKVSF-VCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLY 416
                P   S++     K +  V KG L +  +L+L+++LG   QI  L L +    + +
Sbjct: 366 FTYGFPSAFSLDQSSLQKATLHVHKGALYSSDFLQLREYLGNFNQIRRLTLRINYVGIRF 425

Query: 417 NLDELSECS-PSLPLQVENLEL---------HTNVPLSDYETLLDCVFWICHPRTLRVNV 466
             + L+  S P+LP  +++L+L          +   L DY  ++D + W+CHP T+ +  
Sbjct: 426 IPETLNNISIPALP-DIKHLKLKICPSTGASGSLANLKDYRDIVDGLLWVCHPETILLIS 484

Query: 467 MFEEDHKFITV 477
            +  ++ FI +
Sbjct: 485 GWSSENLFIQI 495

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557323|ref|XP_003546966.1| PREDICTED: uncharacterized protein LOC100794867 [Glycine max]

 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 159/515 (30%), Positives = 253/515 (49%), Gaps = 63/515 (12%)

Query: 6   ELKIMDETVVAMDRISELPTFIIHHLMSYL-SAKEVARTSVLSKKWNQLYVSFPILDFDQ 64
           E+   D+  V  DRIS+ P  +IHH++S+L +  +  RTSVLSK+W +L+ S+ +L FD+
Sbjct: 150 EMDTSDDGSV--DRISQFPDHVIHHILSHLRNVNDAIRTSVLSKRWRELWYSYSVLIFDE 207

Query: 65  NYFFPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLD 124
             F       D             S     F D+V  SL+        I+K  L +T  D
Sbjct: 208 RKFAAKIGHEDS------------SNKGMMFRDYVSNSLLTSNAKNLQIRKLVLHMTSFD 255

Query: 125 VKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQP 184
           +   AP ++ W+ +A+   ++ELD          YTLPQ +FS+ ++T +RL  C+L   
Sbjct: 256 LLEDAPCLELWLNIAIYRNIKELDLHVGIKNGECYTLPQTVFSSKTLTGIRLSGCKLGT- 314

Query: 185 FDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME 244
            ++I L  L+KL L ++ L E  +Q L S C  +EDL    C GLKHL VS   +LK  E
Sbjct: 315 CNNIKLPYLQKLYLRKIPLVENFIQNLISCCHSVEDLRIIKCSGLKHLHVSNLIRLKRAE 374

Query: 245 IRSFSEEIEIVEISVPSLQQLTLLFYGAR-RPRVVEVARSPHLKKLDL----VSVYFADN 299
           I     +++ VEIS P+L   T  + G +  P  V +     LK+L L    V+  F +N
Sbjct: 375 IH-HCIQLKKVEISAPNLD--TFWYCGKKTSPCKVSLEGCTSLKRLTLEHPQVTRDFCEN 431

Query: 300 EFNHLISKFPSLEDLFVTRCCLPGK-IKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTY 358
           +F    S FP LE L ++      + I IS+  L+    + CK L ++ V+APNLL F  
Sbjct: 432 QF----SNFPLLEKLDLSMSNNKSRFIIISNPHLEKFTLKGCKKLGIVLVEAPNLLSFEC 487

Query: 359 EFNPIPIISINVPCPW-----KVSFVCK------GVLNTHWYLKLKKFLGVSKQIESLKL 407
           +   +P + I+   P+     K+SFV K      G  +  W +++K F+    + E  KL
Sbjct: 488 KGETMPWVEIH---PFGLTQAKLSFVPKSEPRVVGYGDKIW-IRMKSFIQKFNR-ERFKL 542

Query: 408 SLYSTKVLYNLDELSEC----SPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLR 463
            LYS K +   ++L+       P L  ++    ++++  + D    L+ +    HP TL 
Sbjct: 543 VLYSNKSIVIHEDLNNVILPPVPDLGCEI----INSSACIDD---ALNSLLRKLHPVTL- 594

Query: 464 VNVMFEEDHKFITVCYVLFDHQ-----CVIVSTVQ 493
            +++   D KF  + Y +  ++     C I ST +
Sbjct: 595 -SIISPTDSKFPKLVYEMMKNKDKDPICCIYSTSK 628

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743071|emb|CBI35938.3| unnamed protein product [Vitis vinifera]

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 154/486 (31%), Positives = 249/486 (51%), Gaps = 43/486 (8%)

Query: 14  VVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL--YVSFPILDFDQNYFFPGA 71
           V   DRIS LP  I+  ++S L  KE+ARTS+LSK W +L  + S  +L F    FF   
Sbjct: 34  VEEQDRISYLPDDILIRILSLLPTKEIARTSLLSKAWRKLSPFSSLSVLMFQSPDFFHS- 92

Query: 72  SRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPI 131
                     R++N+     V  F++ +D+SL R  +    + + +L L   D++ S  +
Sbjct: 93  ----------RRKNFD----VSSFINAIDSSL-RLRQKDVSLARLQLRLHLNDIE-SESL 136

Query: 132 VDRWIRLAVENGVRELDFENITDE-NTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIML 190
           +D WI  A+E  V+ELD   +       Y LP  IFS  ++T L L  CRLE   D + L
Sbjct: 137 IDSWIDAALERKVKELDLYLLPRSIPEPYGLPAKIFSTTTITVLSLEQCRLEICGD-VDL 195

Query: 191 CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSE 250
            +L+KL L ++  DEQ +++L S CPL+EDL   +C  LK L VS  + L  + + +   
Sbjct: 196 PALRKLCLRKILCDEQAIRQLISSCPLIEDLDIVSCGKLKKLHVSGLANLHRLVV-TCCY 254

Query: 251 EIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPH--LKKLDLVSVYFADNEFNHLISKF 308
            +  +EI  PSLQ      Y  +R  + +V  +P   L++L L   +  ++   +L+S  
Sbjct: 255 NLRRIEIDAPSLQ---YFMYDHQRSLLCDVVWTPGEFLRELILHDRHITNDLLQNLVSGV 311

Query: 309 PSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLK--VIDVDAPNLLLFTYEFNPIP-- 364
           P+LE L +    L  +I+IS +QLK L  R  ++ +   + +DAPNL  FTY    +P  
Sbjct: 312 PNLERLEIDSTRL-QRIEISHHQLKRLELRLSEWQREAKLKIDAPNLQSFTYLGYRMPLT 370

Query: 365 --IISINVPCPWKVSFVCKGVLN-THWY-LKLKKFLGVSKQIESLKLSLYSTKVLYNLDE 420
             I S+N     +     +   + +H++ L+LK+F   SK  + + L + S + L    +
Sbjct: 371 SMISSMNTSSLREAEIHFRNCNDYSHFFILQLKEFFEKSKNCQVINLLIKSKEELIIPRK 430

Query: 421 LSECSPSLPL-QVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVMFEEDHKFITVCY 479
           L    PS P+  +++L L      S ++ ++D + W+CHP+TL +    E   KF+ V Y
Sbjct: 431 LRPI-PSPPVYDIKHLHLIVYY-CSRFQYIIDRMLWMCHPQTLSI----ETSAKFLKVLY 484

Query: 480 VLFDHQ 485
             F ++
Sbjct: 485 NKFSNK 490

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442254|ref|XP_002275641.1| PREDICTED: putative F-box protein At3g44060 [Vitis vinifera]

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 154/486 (31%), Positives = 249/486 (51%), Gaps = 43/486 (8%)

Query: 14  VVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL--YVSFPILDFDQNYFFPGA 71
           V   DRIS LP  I+  ++S L  KE+ARTS+LSK W +L  + S  +L F    FF   
Sbjct: 2   VEEQDRISYLPDDILIRILSLLPTKEIARTSLLSKAWRKLSPFSSLSVLMFQSPDFFHS- 60

Query: 72  SRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPI 131
                     R++N+     V  F++ +D+SL R  +    + + +L L   D++ S  +
Sbjct: 61  ----------RRKNFD----VSSFINAIDSSL-RLRQKDVSLARLQLRLHLNDIE-SESL 104

Query: 132 VDRWIRLAVENGVRELDFENITDE-NTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIML 190
           +D WI  A+E  V+ELD   +       Y LP  IFS  ++T L L  CRLE   D + L
Sbjct: 105 IDSWIDAALERKVKELDLYLLPRSIPEPYGLPAKIFSTTTITVLSLEQCRLEICGD-VDL 163

Query: 191 CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSE 250
            +L+KL L ++  DEQ +++L S CPL+EDL   +C  LK L VS  + L  + + +   
Sbjct: 164 PALRKLCLRKILCDEQAIRQLISSCPLIEDLDIVSCGKLKKLHVSGLANLHRLVV-TCCY 222

Query: 251 EIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPH--LKKLDLVSVYFADNEFNHLISKF 308
            +  +EI  PSLQ      Y  +R  + +V  +P   L++L L   +  ++   +L+S  
Sbjct: 223 NLRRIEIDAPSLQ---YFMYDHQRSLLCDVVWTPGEFLRELILHDRHITNDLLQNLVSGV 279

Query: 309 PSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLK--VIDVDAPNLLLFTYEFNPIP-- 364
           P+LE L +    L  +I+IS +QLK L  R  ++ +   + +DAPNL  FTY    +P  
Sbjct: 280 PNLERLEIDSTRL-QRIEISHHQLKRLELRLSEWQREAKLKIDAPNLQSFTYLGYRMPLT 338

Query: 365 --IISINVPCPWKVSFVCKGVLN-THWY-LKLKKFLGVSKQIESLKLSLYSTKVLYNLDE 420
             I S+N     +     +   + +H++ L+LK+F   SK  + + L + S + L    +
Sbjct: 339 SMISSMNTSSLREAEIHFRNCNDYSHFFILQLKEFFEKSKNCQVINLLIKSKEELIIPRK 398

Query: 421 LSECSPSLPL-QVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVMFEEDHKFITVCY 479
           L    PS P+  +++L L      S ++ ++D + W+CHP+TL +    E   KF+ V Y
Sbjct: 399 LRPI-PSPPVYDIKHLHLIVYY-CSRFQYIIDRMLWMCHPQTLSI----ETSAKFLKVLY 452

Query: 480 VLFDHQ 485
             F ++
Sbjct: 453 NKFSNK 458

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255590973|ref|XP_002535407.1| conserved hypothetical protein [Ricinus communis] gi|223523200|gb|EEF26976.1| conserved hypothetical protein [Ricinus communis]

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 100/273 (36%), Positives = 160/273 (58%), Gaps = 8/273 (2%)

Query: 6   ELKIMDETVVAMDRISELPTFIIHHLMSYLS-AKEVARTSVLSKKWNQLYVSFPILDFDQ 64
           ELK MD    ++D IS+LP  +IHH++S L   K+ ARTS+LSK+W  ++ S+ ILDFDQ
Sbjct: 58  ELKAMDRRSDSIDLISQLPNHVIHHILSLLRCKKDAARTSILSKRWRAIWASYLILDFDQ 117

Query: 65  NYFFPGASRLDY-GSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFL 123
             F     ++    S   +++    ++  + F  FV+ +L    +    IQKF+L LT  
Sbjct: 118 RKFQKQEKKVRRLSSKSKKRKEVEINKKNEMFRAFVENTLRTHIEQDSGIQKFKLHLTSY 177

Query: 124 DVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQ 183
           +V+ SA  VD+WI  A  N +++LD    + ++  Y LPQ +F+A+++T LR+  C+L  
Sbjct: 178 NVELSAH-VDQWIGFATTNNIKDLDLYIPSKKDRCYNLPQTVFAASTITALRISGCKLRT 236

Query: 184 PFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIM 243
             D I L +L+KL   ++ +D QM+Q L   CPL++DL    C GLK L +S ++KL  +
Sbjct: 237 CID-IKLSNLQKLCFAKLRVDGQMIQNLMLSCPLIDDLRLIYCTGLKTLLLS-SNKLYRV 294

Query: 244 EIRSFSEEIEIVEISVPSLQQLTLLFYGARRPR 276
           +I  F   ++ VE+  P+LQ  T  ++G +  R
Sbjct: 295 DIH-FCHGLKNVEVLSPNLQ--TFWYHGKKSTR 324

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458245|ref|XP_004146858.1| PREDICTED: uncharacterized protein LOC101214024 [Cucumis sativus]

 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 146/481 (30%), Positives = 236/481 (49%), Gaps = 55/481 (11%)

Query: 9   IMDETVVAMDRISELPTFIIHHLMSYL-SAKEVARTSVLSKKWNQLYVSFPILDFDQNYF 67
           +  E V  +D IS+LP   IHH++S+L SAKE ARTS+LSKKW   + SF +L F++  +
Sbjct: 45  VEQEVVEPVDTISKLPESAIHHILSFLRSAKEAARTSILSKKWRDAWKSFSVLTFNERSY 104

Query: 68  FPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKG 127
                 L+              +  +KF+D +D SL         I K  L +T   V  
Sbjct: 105 LKAEVGLNS------------DKQRQKFIDSIDNSLQSHLTQNLGIYKLVLRITPELVSH 152

Query: 128 SAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRL---VWCRLEQP 184
               + RW+ +A ENG+ ELD  ++        +P  + S  +++ LRL    W      
Sbjct: 153 ----LKRWVDMAGENGLGELDI-HVETTRKRCKVPLCMHSIKTLSGLRLQGLYW----SS 203

Query: 185 FDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME 244
           F+++   +L+KL L R+ +D Q++QKL S CPLL DL    C GL +L +S + KL+ ++
Sbjct: 204 FEALEFNNLQKLYLRRLHVDPQLIQKLVSTCPLLTDLRIIECRGLTNLKISGSQKLERVD 263

Query: 245 IRSFSEEIEIVEISVPSLQQLTLLFYGARRPRV--VEVARSPHLKKLDLVSVYFADNEFN 302
           +      +  VE+ VPSL+     +Y A++     + +     LK+L L      +N FN
Sbjct: 264 LYQ-CHFLRRVELQVPSLKT---FWYCAKKSSCCKLNLESCTSLKRLTLEDPSMTENFFN 319

Query: 303 HLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDA--PNLLLF---- 356
            L+  FP LE L ++RC     I I++ +L++L  R CK LK IDVD+  P  L +    
Sbjct: 320 KLLVSFPVLEKLNLSRCDKLQIIGIANVELQSLGLRCCKRLKHIDVDSLKPCSLDYHGRE 379

Query: 357 -TYEFNPIPIISINVPCPWKVSFVCKGVLNTHWY----LKLKKFLGVSKQIESLKLSLYS 411
             + F  +P+         K+S V K   +   +    + ++ FLG  +  +  K+ ++ 
Sbjct: 380 MVHAFGCLPLKEA------KISLVSKKKEDPSAFPTRNVFIRSFLG--RHCKGFKIIVWF 431

Query: 412 TKVLYNLDELSEC-SPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVMFEE 470
            K +   DE+ +   PSLP    NL+ H   P ++ + LL+ +    HP  + V   F  
Sbjct: 432 CKNVIIHDEIKDIFLPSLP----NLKFHAIKPSTNAKDLLEDLLTKEHPERIIVASSFSS 487

Query: 471 D 471
           +
Sbjct: 488 E 488

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476919|ref|XP_004154876.1| PREDICTED: uncharacterized protein LOC101224445 [Cucumis sativus]

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 145/481 (30%), Positives = 236/481 (49%), Gaps = 55/481 (11%)

Query: 9   IMDETVVAMDRISELPTFIIHHLMSYL-SAKEVARTSVLSKKWNQLYVSFPILDFDQNYF 67
           +  E V  +D IS+LP   IHH++S+L SAKE ARTS+LSKKW   + SF +L F++  +
Sbjct: 45  VEQEVVEPVDTISKLPESAIHHILSFLRSAKEAARTSILSKKWRDAWKSFSVLTFNERSY 104

Query: 68  FPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKG 127
                 L+              +  +KF+D +D SL         I K  L +T   V  
Sbjct: 105 LKAEVGLNS------------DKQRQKFIDSIDNSLQSHLTQNLGIYKLVLRITPELVSH 152

Query: 128 SAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRL---VWCRLEQP 184
               + RW+ +A ENG+ ELD  ++        +P  + S  +++ LRL    W      
Sbjct: 153 ----LKRWVDMAGENGLGELDI-HVETTRKRCKVPLCMHSIKTLSGLRLQGLYW----SS 203

Query: 185 FDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME 244
           F+++   +L+KL L R+ +D Q++QKL S CPLL DL    C GL +L +S + KL+ ++
Sbjct: 204 FEALEFNNLQKLYLRRLHVDPQLIQKLVSTCPLLTDLRIIECRGLTNLKISGSQKLERVD 263

Query: 245 IRSFSEEIEIVEISVPSLQQLTLLFYGARRPRV--VEVARSPHLKKLDLVSVYFADNEFN 302
           +      +  +E+ VPSL+     +Y A++     + +     LK+L L      +N FN
Sbjct: 264 LYQ-CHFLRRIELQVPSLKT---FWYCAKKSSCCKLNLESCTSLKRLTLEDPSMTENFFN 319

Query: 303 HLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDA--PNLLLF---- 356
            L+  FP LE L ++RC     I I++ +L++L  R CK LK IDVD+  P  L +    
Sbjct: 320 KLLVSFPVLEKLNLSRCDKLQIIGIANVELQSLGLRCCKRLKHIDVDSLKPCSLDYHGRE 379

Query: 357 -TYEFNPIPIISINVPCPWKVSFVCKGVLNTHWY----LKLKKFLGVSKQIESLKLSLYS 411
             + F  +P+         K+S V K   +   +    + ++ FLG  +  +  K+ ++ 
Sbjct: 380 MVHAFGCLPLKEA------KISLVSKKKEDPSAFPTRNVFIRSFLG--RHCKGFKIVVWF 431

Query: 412 TKVLYNLDELSEC-SPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVMFEE 470
            K +   DE+ +   PSLP    NL+ H   P ++ + LL+ +    HP  + V   F  
Sbjct: 432 CKNVIIHDEIKDIFLPSLP----NLKFHAIKPSTNAKDLLEDLLTKEHPERIIVASSFSS 487

Query: 471 D 471
           +
Sbjct: 488 E 488

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	495
TAIR|locus:2152950	540	AT5G41840 [Arabidopsis thalian	0.397	0.364	0.309	1.3e-16
TAIR|locus:2160205	472	AT5G54820 [Arabidopsis thalian	0.418	0.438	0.258	2.2e-13
TAIR|locus:2055993	448	AT2G04230 "AT2G04230" [Arabido	0.175	0.194	0.370	4e-13
TAIR|locus:2052362	443	AT2G42720 "AT2G42720" [Arabido	0.4	0.446	0.326	6.8e-13
TAIR|locus:2126096	507	AT4G00320 "AT4G00320" [Arabido	0.391	0.382	0.301	6.9e-13
TAIR|locus:2016630	505	AT1G58310 [Arabidopsis thalian	0.383	0.376	0.319	1.2e-12
TAIR|locus:2081247	464	AT3G59160 "AT3G59160" [Arabido	0.434	0.463	0.317	1.2e-12
TAIR|locus:2010032	416	AT1G13570 "AT1G13570" [Arabido	0.214	0.254	0.303	1.6e-12
TAIR|locus:2015681	449	AT1G16930 "AT1G16930" [Arabido	0.101	0.111	0.5	2e-12
TAIR|locus:2092737	456	AT3G18150 "AT3G18150" [Arabido	0.272	0.296	0.270	3.5e-12

TAIR|locus:2152950 AT5G41840 [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
 Identities = 69/223 (30%), Positives = 114/223 (51%)

Query:    15 VAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQN-YFFPGASR 73
             V+ DRIS LP  +I H++S+L  KE A T+VL+K+W  L    P L+FD + YF P A R
Sbjct:    11 VSGDRISGLPDALICHILSFLPTKEAASTTVLAKRWKPLLAFVPNLNFDDSIYFHPRARR 70

Query:    74 LDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVD 133
               Y            S++ + FM FVD+ L    K K  +++F +     DV   + +++
Sbjct:    71 NKY------------SKSYESFMSFVDSVLALQAKTKTPLKRFHVKCE--DVVDQSWVLE 116

Query:   134 RWIRLAVENGVRELDFE-----NITDENTVYTLPQAIFSANSVTNLRLVW---CRLEQPF 185
              WI   ++ GV ++D       N  + ++ Y+LP  IF + ++  L++ +     ++   
Sbjct:   117 -WIPKVLKRGVLDIDLHITSSRNYCENSSFYSLPSKIFVSKTLVRLKIQFQDGVHIDVE- 174

Query:   186 DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNC-W 227
               + L  LK L L+   ++  M+ KL S C  LE+L  +N  W
Sbjct:   175 GGVSLPKLKTLHLDYFKIETSMLNKLLSGCHALEELVLANLMW 217

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2160205 AT5G54820 [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
 Identities = 56/217 (25%), Positives = 103/217 (47%)

Query:    15 VAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDF-DQNYFFPGASR 73
             +  DR+S LP  ++  ++S+L  KE  RTSVLSK+W  L +    L F + +Y  P  + 
Sbjct:     4 IQQDRLSSLPDILLIMIISFLPLKECVRTSVLSKRWRYLCLETTNLSFKESDYVNPDITD 63

Query:    74 LDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVD 133
              +Y      +   SF  +V K++      +V     + C      F   +D      +  
Sbjct:    64 AEYSRIVAYR---SFFCSVDKWVSITQHQVVE--SFEICFSHLVGFEDKIDALIEYAVST 118

Query:   134 RWIRLAVE-NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCS 192
             R   L V+ +        +I+  + +YTLP++++S  ++ +L++  C+ + P   +    
Sbjct:   119 RVKNLVVDLSNPSWRSNGDISYRHFMYTLPKSVYSLTTLESLKIYGCKFD-PSKFVNPVL 177

Query:   193 LKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGL 229
             L+ L++  V L+   +  L S+ P L+ L   NCWG+
Sbjct:   178 LRSLSIGWVRLEN--LHSLLSKSPSLQSLSIKNCWGV 212

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2055993 AT2G04230 "AT2G04230" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 4.0e-13, Sum P(3) = 4.0e-13
 Identities = 33/89 (37%), Positives = 48/89 (53%)

Query:   135 WIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDS-IMLCSL 193
             WI  A   GVR+L  ++   E+   TLP  +FS N    +  + C ++  F S + L SL
Sbjct:   110 WIATAFARGVRKLVLDSFYQEDQTVTLPSVLFSYNDSLEILKLKCAIDLDFPSRVCLKSL 169

Query:   194 KKLTLERVCL-DEQMVQKLASECPLLEDL 221
             +KL L++V   DE+ V  L   CP L+DL
Sbjct:   170 RKLYLDQVHFKDEESVCNLLCGCPSLQDL 198

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2052362 AT2G42720 "AT2G42720" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
 Identities = 75/230 (32%), Positives = 109/230 (47%)

Query:    17 MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDY 76
             MDRIS LP  I+ H++S+LS KE A TS LS +W  ++V  P L             LDY
Sbjct:     1 MDRISSLPDEILEHILSFLSTKEAALTSSLSTRWKNVFVFVPSL------------HLDY 48

Query:    77 GSFCVRKQNYSFSETVKKFMDFVDASLVRFC-KLKFCIQKFRLFLTFLDVKG--SAPIVD 133
                   +Q+    E  ++F+DFVD     F  K    I+K  L +   D +   +   V 
Sbjct:    49 A-----RQH----ENPREFIDFVDFVNTLFNRKGNSPIKKLALKIHLKDNQSLQNQTHVQ 99

Query:   134 RWI-RLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLV-WCRLEQPFDSIMLC 191
              WI R+    GV +LD   IT +     +P  IF +N++  LRL     ++   +++ L 
Sbjct:   100 SWIHRVLSRGGVTDLDLF-ITFKGKFQLVPLLIFKSNTLVKLRLGRGFTIKLCHENVYLP 158

Query:   192 SLKKLTLERVCLD--EQMVQKLASECPLLEDLCFSNC-WGLKHLCVSKAS 238
              LK L L+ V  D    + + L   CPLLE+L   +  W  K  C S +S
Sbjct:   159 MLKTLCLDTVDFDGDHNVFETLLPRCPLLEELVLEDQRW--KQWCGSVSS 206

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006259 "DNA metabolic process" evidence=RCA

GO:0007059 "chromosome segregation" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007126 "meiosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0032204 "regulation of telomere maintenance" evidence=RCA

GO:0032504 "multicellular organism reproduction" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

TAIR|locus:2126096 AT4G00320 "AT4G00320" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 6.9e-13, P = 6.9e-13
 Identities = 66/219 (30%), Positives = 106/219 (48%)

Query:    18 DRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYG 77
             D IS LP  +I H++S+L  K  A T+VL+K+W  L    P LDFD+++      R D  
Sbjct:    13 DGISGLPDAMICHILSFLPTKVAASTTVLAKRWKPLLAFMPNLDFDESF------RFDPR 66

Query:    78 SFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIR 137
               C  ++  S S     FM  VD+ L    +    + KF  ++    V+ ++ +   WI 
Sbjct:    67 MTCEERRKGSES-----FMLVVDSVLALQAEANATLNKF--YVKCEGVEQNSVL--EWIP 117

Query:   138 LAVENGVRELDFE-----NITDENTVYTLPQAIFSANSVTNLRLVW---CRLEQPFDSIM 189
               ++ GV ++D +          +T Y LP  IF + ++  L++ +     +    D + 
Sbjct:   118 KVLKRGVLDIDLQIPSSRGFGSNSTFYPLPSEIFVSKTLVRLKIQFQDGANVNVEGD-VS 176

Query:   190 LCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNC-W 227
             L  LK L L+ V +D +M+QKL S C  LE+L   N  W
Sbjct:   177 LPMLKTLHLDYVKMDTRMLQKLLSGCHTLEELLLMNLIW 215

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2016630 AT1G58310 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
 Identities = 69/216 (31%), Positives = 107/216 (49%)

Query:    18 DRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFF------PGA 71
             D IS LP  ++ H++S+L+ KE A TSVL+KKW  L+ S P LDFD +         P  
Sbjct:     8 DIISGLPDSLLCHILSFLNTKEAASTSVLAKKWRYLFASVPNLDFDDSVHLRLGKRNPAV 67

Query:    72 SRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPI 131
             S  DY    ++  N    +    FMDFVD  ++R  +    + KF L +   D      I
Sbjct:    68 SGEDY----LKMINERSDQLSTSFMDFVD-QVLRL-QDNSPLHKFSLKIR--DCVDIVRI 119

Query:   132 VDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQ-PF---DS 187
             +  WI   +E GV +L+ +      +  +LP  IF + ++  L+L    +E+ PF   + 
Sbjct:   120 IC-WILKVLERGVSDLELDMHLKWKS--SLPSKIFLSETLVRLKL---SVERGPFIDVED 173

Query:   188 IMLCSLKKLTLERVCLDEQMV--QKLASECPLLEDL 221
             + L  LK L +  V  ++  +   KL S C +LE+L
Sbjct:   174 VHLPKLKTLHIVSVKFEKHGIGLNKLLSGCHILEEL 209

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2081247 AT3G59160 "AT3G59160" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 75/236 (31%), Positives = 106/236 (44%)

Query:     4 LTELKIMDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFD 63
             + + K MD    + D I++LP  ++ H++SYL+ KE A TS+LS++W  L    P L+FD
Sbjct:     1 MVDSKRMDSG--SKDMINDLPDALLCHVLSYLTTKEAASTSLLSRRWRYLLAFVPNLEFD 58

Query:    64 QNYFFPGASRLDYGSFCVRKQNYSFSETV----KK----FMDFVDASLVRFCKLKFCIQK 115
              + +     R+        K    F  TV    KK    F DFVD  L    +    + K
Sbjct:    59 DSAYLHRDKRVKNPLH--EKGLVGFVLTVDDKRKKLSTSFPDFVDRILD--LQGNSPLDK 114

Query:   116 FRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLR 175
             F L +           V  WI   +  GV +L    + D N   +LP  IF   ++  L 
Sbjct:   115 FSLKMVDDHDPVDPDCVAPWIHKVLVRGVSDLHL--VIDMNEWTSLPAKIFLTETLVKLT 172

Query:   176 LVWCRLEQPFD--SIMLCSLKKLTLERVCLDEQMV--QKLASECPLLEDLCFSNCW 227
             L   R   P D   + L  LK L LE V  DE+ +   KL S CP LE+L   + W
Sbjct:   173 LK-IRDGPPIDVKHVHLPKLKTLHLESVMFDEEDIGFSKLLSGCPELEELVLHHIW 227

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010032 AT1G13570 "AT1G13570" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
 Identities = 34/112 (30%), Positives = 55/112 (49%)

Query:   113 IQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVT 172
             I KF+L  +F   K   P +D+W+     NG++EL  +    E   + +P  +F+   +T
Sbjct:    83 IHKFQLSTSF---KQCRPDIDQWLLFLSRNGIKELVLKLGEGE---FRVPACLFNCLKLT 136

Query:   173 NLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFS 224
              L L  C  + P        LK L L ++ +  ++++ L S CPLLE L  S
Sbjct:   137 CLELCHCEFDPPQYFKGFSYLKSLNLHQILVAPEVIESLISGCPLLEFLSLS 188

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015681 AT1G16930 "AT1G16930" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 2.0e-12, Sum P(3) = 2.0e-12
 Identities = 25/50 (50%), Positives = 33/50 (66%)

Query:    18 DRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYF 67
             DRIS LP  ++  ++S LS KE   TSVLSK+W  L++  P+LD D N F
Sbjct:    15 DRISNLPDSLLCQILSDLSTKESVCTSVLSKRWRNLWLHVPVLDLDSNNF 64

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092737 AT3G18150 "AT3G18150" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
 Identities = 39/144 (27%), Positives = 70/144 (48%)

Query:    98 FVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENT 157
             F+D +L R+   K  + +F L  + ++   + P ++ WI+ A+   V  L  +       
Sbjct:    84 FIDETLTRYTASK--MMRFHLHTSLIN---NVPHLESWIKFAMSRNVDHLSLDLWNQVAN 138

Query:   158 VYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPL 217
              +  P   F  NS  +L+ +   L+     I +C LKKL L    L ++ +  +   CP+
Sbjct:   139 KFKFPD-FFHINS--SLKQLTVVLDFSDTMIAIC-LKKLYLSTCLLSDESMANILFGCPI 194

Query:   218 LEDLCFSNCWGLKHLCVSKASKLK 241
             LE L   +C GL+ L +SK+ +L+
Sbjct:   195 LESLTLDHCGGLRVLDLSKSLRLR 218

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_1460040 hypothetical protein (528 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	495
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.71
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.65
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.63
KOG4341	483	consensus F-box protein containing LRR [General fu	99.6
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.43
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.41
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.3
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.26
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.05
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.03
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.01
KOG4341	483	consensus F-box protein containing LRR [General fu	98.98
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.78
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.73
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.72
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.7
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.69
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.64
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.47
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.44
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.42
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.33
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.32
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.3
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.28
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.2
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.13
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.11
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.03
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.03
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.99
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.87
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.84
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.81
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.8
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.74
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.72
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.58
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.41
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.37
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.36
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.31
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.23
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.21
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.1
PRK15386	426	type III secretion protein GogB; Provisional	97.09
PRK15386	426	type III secretion protein GogB; Provisional	96.98
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.91
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.46
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.42
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.29
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.2
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.17
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.14
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.04
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.99
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.98
PLN03150	623	hypothetical protein; Provisional	95.72
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	95.72
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.31
PLN03150	623	hypothetical protein; Provisional	95.29
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.27
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.6
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	94.21
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	94.16
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	93.73
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	93.4
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	93.29
KOG2123	388	consensus Uncharacterized conserved protein [Funct	92.23
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	91.5
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	91.32
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	91.3
KOG2997	366	consensus F-box protein FBX9 [General function pre	90.91
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.14
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	88.3
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	83.74
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	82.94
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	82.2

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=3.5e-19  Score=160.41  Aligned_cols=258  Identities=24%  Similarity=0.328  Sum_probs=162.8

Q ss_pred             cCCCCChHHHHHHhcCCChhHHHhhhcccccchhh------hccCceEEEecCccCCCCCCCcccccccccccchhhhhH
Q 011021           19 RISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL------YVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETV   92 (495)
Q Consensus        19 ~is~LPd~vL~~Ils~L~~~d~~rts~lSkrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (495)
                      -+..||||++..|||.|+.+|+.+.+.|||||.++      |...   +...+...+                       
T Consensus        97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~l---Dl~~r~i~p-----------------------  150 (419)
T KOG2120|consen   97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTL---DLTGRNIHP-----------------------  150 (419)
T ss_pred             CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeee---ccCCCccCh-----------------------
Confidence            37789999999999999999999999999999875      5432   333333221                       


Q ss_pred             HHHHHHHHHHHhhhccCCcccceEEEEEeccCCCCChhHHHHHHHHH--HHcCceEeEEEeecCCCcccccCcccccCCc
Q 011021           93 KKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLA--VENGVRELDFENITDENTVYTLPQAIFSANS  170 (495)
Q Consensus        93 ~~f~~~v~~~L~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~wi~~a--~~~~l~~L~l~l~~~~~~~~~lp~~l~~~~~  170 (495)
                          +...+.+    .  ..+..|++--...   ..    .+...++  .+..++.++  +.........+...+..|..
T Consensus       151 ----~~l~~l~----~--rgV~v~Rlar~~~---~~----prlae~~~~frsRlq~lD--LS~s~it~stl~~iLs~C~k  211 (419)
T KOG2120|consen  151 ----DVLGRLL----S--RGVIVFRLARSFM---DQ----PRLAEHFSPFRSRLQHLD--LSNSVITVSTLHGILSQCSK  211 (419)
T ss_pred             ----hHHHHHH----h--CCeEEEEcchhhh---cC----chhhhhhhhhhhhhHHhh--cchhheeHHHHHHHHHHHHh
Confidence                1122222    1  2344444431111   11    1122222  224577777  54434444555556667888


Q ss_pred             ceEEEEeccccCCCC--CccCCCCCcEEEeeeEee-ChHHHHHHHhcCCCccEEEEEecCCCcce---eecC-CCCccEE
Q 011021          171 VTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSK-ASKLKIM  243 (495)
Q Consensus       171 L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~l~~~---~i~~-l~~L~~L  243 (495)
                      |+.|.|.|.++..+.  ....=.+|+.|+|+.+.. +..+++-++++|..|.+|+|+.|......   .+.+ -++|+.|
T Consensus       212 Lk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~L  291 (419)
T KOG2120|consen  212 LKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQL  291 (419)
T ss_pred             hhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhh
Confidence            899999888887654  445667888899988876 88888888889999999999988764432   1111 2677777


Q ss_pred             EeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccc-cChHHHHHHhhcCCCCcEEEecCCCCC
Q 011021          244 EIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY-FADNEFNHLISKFPSLEDLFVTRCCLP  322 (495)
Q Consensus       244 ~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~  322 (495)
                      ++++|...+..-                   ....-...||+|.+|+++.+. ++++.+.. +.+|+.|++|.++.|..+
T Consensus       292 NlsG~rrnl~~s-------------------h~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-~~kf~~L~~lSlsRCY~i  351 (419)
T KOG2120|consen  292 NLSGYRRNLQKS-------------------HLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFKFNYLQHLSLSRCYDI  351 (419)
T ss_pred             hhhhhHhhhhhh-------------------HHHHHHHhCCceeeeccccccccCchHHHH-HHhcchheeeehhhhcCC
Confidence            777775111110                   011112368888888887655 45544444 467888999999988654


Q ss_pred             ccc----cccccccceEEeccCC
Q 011021          323 GKI----KISSNQLKNLLFRSCK  341 (495)
Q Consensus       323 ~~i----~~~~~~L~~L~l~~c~  341 (495)
                      ..-    ....|.|.+|++.+|-
T Consensus       352 ~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  352 IPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             ChHHeeeeccCcceEEEEecccc
Confidence            321    1245778888777763

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.65  E-value=3.8e-16  Score=175.24  Aligned_cols=257  Identities=18%  Similarity=0.174  Sum_probs=162.6

Q ss_pred             cCceEeEEEeecCCCcccccCcccc-cCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccE
Q 011021          142 NGVRELDFENITDENTVYTLPQAIF-SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED  220 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  220 (495)
                      .+++.|+  +..+. -...+|..++ .+++|++|+|++|.+......+.+++|++|+|++|.++.. +...+.++++|++
T Consensus        93 ~~L~~L~--Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~  168 (968)
T PLN00113         93 PYIQTIN--LSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKV  168 (968)
T ss_pred             CCCCEEE--CCCCc-cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCccccc-CChHHhcCCCCCE
Confidence            6788887  54322 1236777776 6889999999998876544456788899999988887432 2334678888999


Q ss_pred             EEEEecCCCcce--eecCCCCccEEEecccc-c-cceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeecccc
Q 011021          221 LCFSNCWGLKHL--CVSKASKLKIMEIRSFS-E-EIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF  296 (495)
Q Consensus       221 L~L~~c~~l~~~--~i~~l~~L~~L~i~~c~-~-~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  296 (495)
                      |++++|...+..  .+.++++|+.|++.+|. . .+.......++|+.|+++++......+..++.+++|++|+++++.+
T Consensus       169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  248 (968)
T PLN00113        169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL  248 (968)
T ss_pred             EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence            999888643322  34467888888888775 1 1111112467888888875555444555667788888888888776


Q ss_pred             ChHHHHHHhhcCCCCcEEEecCCCCCccccc---cccccceEEeccCCCccEEe---ccCCccceeeeccccc----ceE
Q 011021          297 ADNEFNHLISKFPSLEDLFVTRCCLPGKIKI---SSNQLKNLLFRSCKYLKVID---VDAPNLLLFTYEFNPI----PII  366 (495)
Q Consensus       297 ~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~~---~~~~L~~L~l~~c~~l~~l~---~~~p~L~~l~~~~~~~----~~~  366 (495)
                      ++.... .+.++++|+.|++.+|...+.++.   ..++|+.|+++.|.....+.   ...++|+.+++.++.+    |..
T Consensus       249 ~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~  327 (968)
T PLN00113        249 TGPIPS-SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA  327 (968)
T ss_pred             ccccCh-hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence            653332 245678888888887754333332   34567777777664322221   2356777777776653    233


Q ss_pred             eecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEE
Q 011021          367 SINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLS  408 (495)
Q Consensus       367 ~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~  408 (495)
                      +..+++|+.|+++.+..     ...++..++.+++|+.|+++
T Consensus       328 ~~~l~~L~~L~L~~n~l-----~~~~p~~l~~~~~L~~L~Ls  364 (968)
T PLN00113        328 LTSLPRLQVLQLWSNKF-----SGEIPKNLGKHNNLTVLDLS  364 (968)
T ss_pred             HhcCCCCCEEECcCCCC-----cCcCChHHhCCCCCcEEECC
Confidence            44567777777754433     22345566666777766553

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.63  E-value=4.7e-16  Score=174.43  Aligned_cols=307  Identities=16%  Similarity=0.112  Sum_probs=179.4

Q ss_pred             cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCcc
Q 011021          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  219 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  219 (495)
                      .++++|+  +..+. ....+|..+..+++|++|++++|.+....  ....+++|++|++++|.+... +...+.++++|+
T Consensus       236 ~~L~~L~--L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~  311 (968)
T PLN00113        236 TSLNHLD--LVYNN-LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE-IPELVIQLQNLE  311 (968)
T ss_pred             CCCCEEE--CcCce-eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC-CChhHcCCCCCc
Confidence            5677777  43221 12356667777778888888877764322  455677777887777766322 233456677777


Q ss_pred             EEEEEecCCCcce--eecCCCCccEEEecccc-c-cceEEEEeCCcceEEEEeecCC-----------------------
Q 011021          220 DLCFSNCWGLKHL--CVSKASKLKIMEIRSFS-E-EIEIVEISVPSLQQLTLLFYGA-----------------------  272 (495)
Q Consensus       220 ~L~L~~c~~l~~~--~i~~l~~L~~L~i~~c~-~-~l~~~~~~~p~L~~L~l~~~~~-----------------------  272 (495)
                      +|++.+|...+..  .+.++++|+.|++.+|. . .+.......++|+.|+++.+..                       
T Consensus       312 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~  391 (968)
T PLN00113        312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS  391 (968)
T ss_pred             EEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCE
Confidence            7777776543222  23345667777766664 1 1111111334555555543222                       


Q ss_pred             -CCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcccc---ccccccceEEeccCCCccEEe-
Q 011021          273 -RRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK---ISSNQLKNLLFRSCKYLKVID-  347 (495)
Q Consensus       273 -~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~---~~~~~L~~L~l~~c~~l~~l~-  347 (495)
                       ....+..++.+++|+.|++.+|.+++.... .+..+++|+.|++++|...+.++   ...++|+.|.+.+|.....+. 
T Consensus       392 l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~  470 (968)
T PLN00113        392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPS-EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD  470 (968)
T ss_pred             ecccCCHHHhCCCCCCEEECcCCEeeeECCh-hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc
Confidence             222222344556666666666655543222 23456666677766664333222   135667777777665432222 


Q ss_pred             -ccCCccceeeecccccc----eEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceeccccccc
Q 011021          348 -VDAPNLLLFTYEFNPIP----IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELS  422 (495)
Q Consensus       348 -~~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~  422 (495)
                       ...++|+.++++++.+.    ..+.++++|+.|+++.+..     ...+|..+.++++|+.|+++.+.... ..|+.+.
T Consensus       471 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-----~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~  544 (968)
T PLN00113        471 SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL-----SGEIPDELSSCKKLVSLDLSHNQLSG-QIPASFS  544 (968)
T ss_pred             ccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcc-----eeeCChHHcCccCCCEEECCCCcccc-cCChhHh
Confidence             23466778888776642    3445677888888865544     33467778888889977765433322 2477777


Q ss_pred             ccCCCCCCccceeEEEecCCCccHHHHHHHHhhhccCCeeEEeec
Q 011021          423 ECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVM  467 (495)
Q Consensus       423 ~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l~~~~~l~~l~i~~~  467 (495)
                      ++     ++|+.|++++|.-.+..|.   .+..++.|++|.+.++
T Consensus       545 ~l-----~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~l~ls~N  581 (968)
T PLN00113        545 EM-----PVLSQLDLSQNQLSGEIPK---NLGNVESLVQVNISHN  581 (968)
T ss_pred             Cc-----ccCCEEECCCCcccccCCh---hHhcCcccCEEeccCC
Confidence            76     8899999998886665553   4444677888888776

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.60  E-value=4.5e-17  Score=153.42  Aligned_cols=324  Identities=15%  Similarity=0.180  Sum_probs=182.4

Q ss_pred             CCcCC-CCChHHHHHHhcCCChhHHHhhhcccccchhh------hccCceEEEecCccCCCCCCCcccccccccccchhh
Q 011021           17 MDRIS-ELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL------YVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFS   89 (495)
Q Consensus        17 ~d~is-~LPd~vL~~Ils~L~~~d~~rts~lSkrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (495)
                      .+.++ .||.|++.+|||+|+++...|++++|+-|.-+      |..+..+.|....     +.                
T Consensus        68 ~~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv-----~g----------------  126 (483)
T KOG4341|consen   68 NNSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDV-----DG----------------  126 (483)
T ss_pred             cccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcC-----CC----------------
Confidence            34444 59999999999999999999999999999865      5554333322111     00                


Q ss_pred             hhHHHHHHHHHHHHhhhccCCcccceEEEEEeccCCCCChhHHHHHHHHHHHcCceEeEEEeecCCCcccccCcccccCC
Q 011021           90 ETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSAN  169 (495)
Q Consensus        90 ~~~~~f~~~v~~~L~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~wi~~a~~~~l~~L~l~l~~~~~~~~~lp~~l~~~~  169 (495)
                             ..|.... .  +.++.+++++++-...                                .....+-.....|+
T Consensus       127 -------~VV~~~~-~--Rcgg~lk~LSlrG~r~--------------------------------v~~sslrt~~~~Cp  164 (483)
T KOG4341|consen  127 -------GVVENMI-S--RCGGFLKELSLRGCRA--------------------------------VGDSSLRTFASNCP  164 (483)
T ss_pred             -------cceehHh-h--hhcccccccccccccc--------------------------------CCcchhhHHhhhCC
Confidence                   0111111 1  1224455555442211                                01122222334567


Q ss_pred             cceEEEEeccccCCC-C---CccCCCCCcEEEeeeEee-ChHHHHHHHhcCCCccEEEEEecCCCcce----eecCCCCc
Q 011021          170 SVTNLRLVWCRLEQP-F---DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHL----CVSKASKL  240 (495)
Q Consensus       170 ~L~~L~L~~c~l~~~-~---~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~l~~~----~i~~l~~L  240 (495)
                      ++++|.+.+|...+. .   ....|+.|++|+|..|.. ++..++.+..+||+|++|++++|+.+..-    ...++..+
T Consensus       165 nIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l  244 (483)
T KOG4341|consen  165 NIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKEL  244 (483)
T ss_pred             chhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhh
Confidence            777777777753221 1   334677788888877554 77777777778888888888888765542    22356667


Q ss_pred             cEEEecccc-c---cceEEEEeCCcceEEEEeecCC--CCceeEEeecCCCccEEEeeccc-cChHHHHHHhhcCCCCcE
Q 011021          241 KIMEIRSFS-E---EIEIVEISVPSLQQLTLLFYGA--RRPRVVEVARSPHLKKLDLVSVY-FADNEFNHLISKFPSLED  313 (495)
Q Consensus       241 ~~L~i~~c~-~---~l~~~~~~~p~L~~L~l~~~~~--~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~  313 (495)
                      +.+...+|. .   .+..+.-.++-+..+++..|..  +......--.+..|+.|..+++. +++..+..+..++++|+.
T Consensus       245 ~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~  324 (483)
T KOG4341|consen  245 EKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQV  324 (483)
T ss_pred             hhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEE
Confidence            777666776 1   1222222334444444332211  00000011135566666666543 555566666667777777


Q ss_pred             EEecCCCCCcc-----ccccccccceEEeccCCC-----ccEEeccCCccceeeeccccc------c---eEeecCCCCc
Q 011021          314 LFVTRCCLPGK-----IKISSNQLKNLLFRSCKY-----LKVIDVDAPNLLLFTYEFNPI------P---IISINVPCPW  374 (495)
Q Consensus       314 L~L~~~~~~~~-----i~~~~~~L~~L~l~~c~~-----l~~l~~~~p~L~~l~~~~~~~------~---~~~~~~~~L~  374 (495)
                      |.+..|.....     +...++.|+.+++..|..     +..+..+||.|+.+.++.+..      .   .....+..|+
T Consensus       325 l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~  404 (483)
T KOG4341|consen  325 LELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLE  404 (483)
T ss_pred             EeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccc
Confidence            77777754332     233566777777766653     234455677777666664331      1   1223455777


Q ss_pred             eEEEEEecccchhhhcchHHHhccCCccceEEE
Q 011021          375 KVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKL  407 (495)
Q Consensus       375 ~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l  407 (495)
                      .++++.+....    +..-+++..+++||++++
T Consensus       405 ~lEL~n~p~i~----d~~Le~l~~c~~Leri~l  433 (483)
T KOG4341|consen  405 VLELDNCPLIT----DATLEHLSICRNLERIEL  433 (483)
T ss_pred             eeeecCCCCch----HHHHHHHhhCcccceeee
Confidence            77886544422    334567778888887555

>PLN03210 Resistant to P

Probab=99.43  E-value=7.7e-13  Score=149.47  Aligned_cols=258  Identities=16%  Similarity=0.146  Sum_probs=149.8

Q ss_pred             cCCcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee--ecCCCCccEE
Q 011021          167 SANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKASKLKIM  243 (495)
Q Consensus       167 ~~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~--i~~l~~L~~L  243 (495)
                      ...+|+.|++.++.+...+ +...+++|+.|+|+++..-. .++. ++.+++|++|++.+|..+..++  +..+++|+.|
T Consensus       609 ~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~-~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L  686 (1153)
T PLN03210        609 RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK-EIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL  686 (1153)
T ss_pred             CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC-cCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence            4567777777777665543 45677888888887764311 1111 4567888888888887655433  2356777777


Q ss_pred             EeccccccceEEE--EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChH----------------------
Q 011021          244 EIRSFSEEIEIVE--ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN----------------------  299 (495)
Q Consensus       244 ~i~~c~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----------------------  299 (495)
                      ++.+|. .+..+.  +..++|+.|++++|......+.   ..++|+.|++.++.+..-                      
T Consensus       687 ~L~~c~-~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l  762 (1153)
T PLN03210        687 DMSRCE-NLEILPTGINLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKL  762 (1153)
T ss_pred             eCCCCC-CcCccCCcCCCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccccccccccccccccccccccchhhc
Confidence            777776 333322  2456667776663322111111   123444454444432210                      


Q ss_pred             ------HHHHHhhcCCCCcEEEecCCCCCccccc---cccccceEEeccCCCccEEec--cCCccceeeeccccc-ceEe
Q 011021          300 ------EFNHLISKFPSLEDLFVTRCCLPGKIKI---SSNQLKNLLFRSCKYLKVIDV--DAPNLLLFTYEFNPI-PIIS  367 (495)
Q Consensus       300 ------~~~~l~~~~~~L~~L~L~~~~~~~~i~~---~~~~L~~L~l~~c~~l~~l~~--~~p~L~~l~~~~~~~-~~~~  367 (495)
                            ........+++|+.|++.+|.....++.   .+++|+.|.+.+|.+++.++.  ..++|++++++++.. ....
T Consensus       763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p  842 (1153)
T PLN03210        763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFP  842 (1153)
T ss_pred             cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccc
Confidence                  0000111246788888888766665554   356778888888888877653  367788888887642 1111


Q ss_pred             ecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEE-EecceecccccccccCCCCCCccceeEEEecCCC
Q 011021          368 INVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSL-YSTKVLYNLDELSECSPSLPLQVENLELHTNVPL  443 (495)
Q Consensus       368 ~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~-~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~  443 (495)
                      ...++|+.|+++.+    .  +..+|..++++++|+.|++.. .....+  |.....+     +.|+.|.+++|+..
T Consensus       843 ~~~~nL~~L~Ls~n----~--i~~iP~si~~l~~L~~L~L~~C~~L~~l--~~~~~~L-----~~L~~L~l~~C~~L  906 (1153)
T PLN03210        843 DISTNISDLNLSRT----G--IEEVPWWIEKFSNLSFLDMNGCNNLQRV--SLNISKL-----KHLETVDFSDCGAL  906 (1153)
T ss_pred             ccccccCEeECCCC----C--CccChHHHhcCCCCCEEECCCCCCcCcc--Ccccccc-----cCCCeeecCCCccc
Confidence            12357777777432    2  455777888888888777743 233333  4444444     66777777777643

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.41  E-value=7.8e-13  Score=149.43  Aligned_cols=242  Identities=17%  Similarity=0.116  Sum_probs=173.3

Q ss_pred             cccCcccccCCcceEEEEeccc-cCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeec-C
Q 011021          159 YTLPQAIFSANSVTNLRLVWCR-LEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVS-K  236 (495)
Q Consensus       159 ~~lp~~l~~~~~L~~L~L~~c~-l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~-~  236 (495)
                      ..+|..+..+++|+.|+|++|. +...+....+++|++|+|++|..- ..++..+.++++|++|++.+|..++.++.. +
T Consensus       624 ~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~  702 (1153)
T PLN03210        624 EKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEILPTGIN  702 (1153)
T ss_pred             cccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCccCCcCC
Confidence            3456667778999999999875 444445678899999999998652 123444678999999999999887766543 5


Q ss_pred             CCCccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeE------------------------------EeecCCCc
Q 011021          237 ASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVV------------------------------EVARSPHL  286 (495)
Q Consensus       237 l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~------------------------------~~~~~~~L  286 (495)
                      +++|+.|.+.+|. .+..+....++|+.|+++.+... ..+.                              ....+++|
T Consensus       703 l~sL~~L~Lsgc~-~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL  780 (1153)
T PLN03210        703 LKSLYRLNLSGCS-RLKSFPDISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL  780 (1153)
T ss_pred             CCCCCEEeCCCCC-CccccccccCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccc
Confidence            7899999999997 44444333456777766633321 1110                              01123578


Q ss_pred             cEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCccccc--cccccceEEeccCCCccEEeccCCccceeeeccccc-
Q 011021          287 KKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI--SSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPI-  363 (495)
Q Consensus       287 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~~--~~~~L~~L~l~~c~~l~~l~~~~p~L~~l~~~~~~~-  363 (495)
                      +.|+++++......... +.++++|+.|+|.+|..++.++.  ..++|+.|.+++|.+++.+.-...+++.+++.++.+ 
T Consensus       781 ~~L~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~  859 (1153)
T PLN03210        781 TRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE  859 (1153)
T ss_pred             hheeCCCCCCccccChh-hhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCc
Confidence            88888877644433333 56899999999999988887764  367899999999999887755567899999988764 


Q ss_pred             --ceEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEE
Q 011021          364 --PIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSL  409 (495)
Q Consensus       364 --~~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~  409 (495)
                        |..+..+++|+.++++.|..     +..++..+..+++|+.++++.
T Consensus       860 ~iP~si~~l~~L~~L~L~~C~~-----L~~l~~~~~~L~~L~~L~l~~  902 (1153)
T PLN03210        860 EVPWWIEKFSNLSFLDMNGCNN-----LQRVSLNISKLKHLETVDFSD  902 (1153)
T ss_pred             cChHHHhcCCCCCEEECCCCCC-----cCccCcccccccCCCeeecCC
Confidence              44566789999999976665     555666677788888777743

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.30  E-value=2.9e-13  Score=132.80  Aligned_cols=284  Identities=16%  Similarity=0.118  Sum_probs=129.2

Q ss_pred             cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCcc
Q 011021          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  219 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  219 (495)
                      .+++++.  +.  ...-..+|.......+|++|+|.+|.++...  ....+|.|++|+|+.|.++.-... -+..-++++
T Consensus       102 ~nLq~v~--l~--~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~-sfp~~~ni~  176 (873)
T KOG4194|consen  102 PNLQEVN--LN--KNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKP-SFPAKVNIK  176 (873)
T ss_pred             Ccceeee--ec--cchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCC-CCCCCCCce
Confidence            4555555  32  1233456655555566777777776654432  344566666666666655211100 022334566


Q ss_pred             EEEEEecCC--CcceeecCCCCccEEEecccc-ccceEEEE-eCCcceEEEEeecCCCCceeEEeecCCCccEEEee---
Q 011021          220 DLCFSNCWG--LKHLCVSKASKLKIMEIRSFS-EEIEIVEI-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLV---  292 (495)
Q Consensus       220 ~L~L~~c~~--l~~~~i~~l~~L~~L~i~~c~-~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~---  292 (495)
                      +|+|.+|..  +..-...++.+|..|.++.+. ..+..... ..|+|+.|++..+.........+.++++|+.|.+.   
T Consensus       177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~  256 (873)
T KOG4194|consen  177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND  256 (873)
T ss_pred             EEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcC
Confidence            666666643  111222334455555555543 11111111 24555555555332221112233344444444444   


Q ss_pred             ---------------------ccccChHHHHHHhhcCCCCcEEEecCCCCCcccc----ccccccceEEeccCCCccEEe
Q 011021          293 ---------------------SVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK----ISSNQLKNLLFRSCKYLKVID  347 (495)
Q Consensus       293 ---------------------~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~----~~~~~L~~L~l~~c~~l~~l~  347 (495)
                                           .|++..- -.+++-++..|+.|+++.+ .++.|.    .-+++|+.|+++.. .+..+.
T Consensus       257 I~kL~DG~Fy~l~kme~l~L~~N~l~~v-n~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~N-~i~~l~  333 (873)
T KOG4194|consen  257 ISKLDDGAFYGLEKMEHLNLETNRLQAV-NEGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSSN-RITRLD  333 (873)
T ss_pred             cccccCcceeeecccceeecccchhhhh-hcccccccchhhhhccchh-hhheeecchhhhcccceeEecccc-ccccCC
Confidence                                 3333221 1122334455555555543 122221    12345555554432 122221


Q ss_pred             c----cCCccceeeecccccc----eEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccc
Q 011021          348 V----DAPNLLLFTYEFNPIP----IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLD  419 (495)
Q Consensus       348 ~----~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~  419 (495)
                      -    ....|+.+.++.+.+.    ..+..+++|++|+++.+.....  ++.....+..+++|++|.+.....+.+ ...
T Consensus       334 ~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~--IEDaa~~f~gl~~LrkL~l~gNqlk~I-~kr  410 (873)
T KOG4194|consen  334 EGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWC--IEDAAVAFNGLPSLRKLRLTGNQLKSI-PKR  410 (873)
T ss_pred             hhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEE--EecchhhhccchhhhheeecCceeeec-chh
Confidence            1    1233444555554432    2334466677666643322222  333344555577777666655544444 222


Q ss_pred             cccccCCCCCCccceeEEEecC
Q 011021          420 ELSECSPSLPLQVENLELHTNV  441 (495)
Q Consensus       420 ~~~~~~~~~p~~L~~L~l~~~~  441 (495)
                      .|..+     ++|++|++.+|.
T Consensus       411 Afsgl-----~~LE~LdL~~Na  427 (873)
T KOG4194|consen  411 AFSGL-----EALEHLDLGDNA  427 (873)
T ss_pred             hhccC-----cccceecCCCCc
Confidence            45555     667777777765

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.26  E-value=5.6e-13  Score=130.82  Aligned_cols=295  Identities=14%  Similarity=0.122  Sum_probs=184.4

Q ss_pred             cccCccccc-CCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCC--Cccee
Q 011021          159 YTLPQAIFS-ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWG--LKHLC  233 (495)
Q Consensus       159 ~~lp~~l~~-~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~--l~~~~  233 (495)
                      .++|..-+. -.++++|+|++|+++...  .+.++.+|..|.|++|+++.- ....+++.|.||.|+|..|..  ...+.
T Consensus       162 s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL-p~r~Fk~L~~L~~LdLnrN~irive~lt  240 (873)
T KOG4194|consen  162 SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL-PQRSFKRLPKLESLDLNRNRIRIVEGLT  240 (873)
T ss_pred             hcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc-CHHHhhhcchhhhhhccccceeeehhhh
Confidence            344443343 378999999999987654  677888999999999998432 234577899999999999864  33456


Q ss_pred             ecCCCCccEEEecccc-ccceEEE-EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCC
Q 011021          234 VSKASKLKIMEIRSFS-EEIEIVE-ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSL  311 (495)
Q Consensus       234 i~~l~~L~~L~i~~c~-~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L  311 (495)
                      ..++++|+.|.+..+. ..+..-. ..+.+++.|++..+....-..-.+-++..|+.|++++|.+..-....+ +-+++|
T Consensus       241 FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W-sftqkL  319 (873)
T KOG4194|consen  241 FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW-SFTQKL  319 (873)
T ss_pred             hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh-hhcccc
Confidence            6688999999998775 2332222 357788888887443322222233468888889998887654333332 457889


Q ss_pred             cEEEecCCCCCccccc-c---ccccceEEeccCCCccEE---e-ccCCccceeeecccccc-------eEeecCCCCceE
Q 011021          312 EDLFVTRCCLPGKIKI-S---SNQLKNLLFRSCKYLKVI---D-VDAPNLLLFTYEFNPIP-------IISINVPCPWKV  376 (495)
Q Consensus       312 ~~L~L~~~~~~~~i~~-~---~~~L~~L~l~~c~~l~~l---~-~~~p~L~~l~~~~~~~~-------~~~~~~~~L~~l  376 (495)
                      +.|+|+.+. +..+.. +   ...|+.|.++... +..+   . ....+|+.++++.+.+.       ..+..+++|++|
T Consensus       320 ~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL  397 (873)
T KOG4194|consen  320 KELDLSSNR-ITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL  397 (873)
T ss_pred             eeEeccccc-cccCChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence            999998763 222322 2   2355555554432 2222   1 23567777887776632       234468999999


Q ss_pred             EEEEecccchhhhcch-HHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCC--CccHHHHHHHH
Q 011021          377 SFVCKGVLNTHWYLKL-KKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVP--LSDYETLLDCV  453 (495)
Q Consensus       377 ~i~~~~~~~~~~~~~l-~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~--~~~~~~l~~~l  453 (495)
                      .+..+.      ++.+ +..+..+..||.|++.-...-. +.|+.|..+      .|+.|.+.+-..  ...+.++...|
T Consensus       398 ~l~gNq------lk~I~krAfsgl~~LE~LdL~~NaiaS-Iq~nAFe~m------~Lk~Lv~nSssflCDCql~Wl~qWl  464 (873)
T KOG4194|consen  398 RLTGNQ------LKSIPKRAFSGLEALEHLDLGDNAIAS-IQPNAFEPM------ELKELVMNSSSFLCDCQLKWLAQWL  464 (873)
T ss_pred             eecCce------eeecchhhhccCcccceecCCCCccee-ecccccccc------hhhhhhhcccceEEeccHHHHHHHH
Confidence            994333      3343 5678899999977774332222 356666443      688887775442  22343433332


Q ss_pred             hhhccCCeeEEeeccccc
Q 011021          454 FWICHPRTLRVNVMFEED  471 (495)
Q Consensus       454 ~~~~~l~~l~i~~~~~~~  471 (495)
                      -. -.++.-.+..|.-||
T Consensus       465 ~~-~~lq~sv~a~CayPe  481 (873)
T KOG4194|consen  465 YR-RKLQSSVIAKCAYPE  481 (873)
T ss_pred             Hh-cccccceeeeccCCc
Confidence            22 246666667774333

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.05  E-value=1.9e-12  Score=128.10  Aligned_cols=268  Identities=16%  Similarity=0.083  Sum_probs=165.4

Q ss_pred             cccccCcccccCCcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee--
Q 011021          157 TVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC--  233 (495)
Q Consensus       157 ~~~~lp~~l~~~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~--  233 (495)
                      ....+|+.+|....|+.|+|++|.+...| ....-.++-.|+|++|.++ .....++.+...|-.|+|++|.. ..++  
T Consensus        91 KnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrL-e~LPPQ  168 (1255)
T KOG0444|consen   91 KNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRL-EMLPPQ  168 (1255)
T ss_pred             ccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchh-hhcCHH
Confidence            45677888888888999999988876655 5566678888888888872 12234455677777888887753 2222  


Q ss_pred             ecCCCCccEEEecccc---ccceEEEEeCCcceEEEEeecCC-CCceeEEeecCCCccEEEeeccccChHHHHHHhhcCC
Q 011021          234 VSKASKLKIMEIRSFS---EEIEIVEISVPSLQQLTLLFYGA-RRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFP  309 (495)
Q Consensus       234 i~~l~~L~~L~i~~c~---~~l~~~~~~~p~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~  309 (495)
                      +..+..|++|.++++.   .++..+ ....+|+.|.++.... ...++.++..+.+|..++++.|.++-  ..+-+-+++
T Consensus       169 ~RRL~~LqtL~Ls~NPL~hfQLrQL-PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~--vPecly~l~  245 (1255)
T KOG0444|consen  169 IRRLSMLQTLKLSNNPLNHFQLRQL-PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI--VPECLYKLR  245 (1255)
T ss_pred             HHHHhhhhhhhcCCChhhHHHHhcC-ccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc--chHHHhhhh
Confidence            2356678888888775   111111 1344566667662221 22355566677888888888777654  233344678


Q ss_pred             CCcEEEecCCCCCccccc---cccccceEEeccCCCccEEe---ccCCccceeeecccc-----cceEeecCCCCceEEE
Q 011021          310 SLEDLFVTRCCLPGKIKI---SSNQLKNLLFRSCKYLKVID---VDAPNLLLFTYEFNP-----IPIISINVPCPWKVSF  378 (495)
Q Consensus       310 ~L~~L~L~~~~~~~~i~~---~~~~L~~L~l~~c~~l~~l~---~~~p~L~~l~~~~~~-----~~~~~~~~~~L~~l~i  378 (495)
                      +|+.|.++++. ++.+..   ...+|+.|.++.. .|..++   ...++|+.+....++     +|..++.+..|+.+..
T Consensus       246 ~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~a  323 (1255)
T KOG0444|consen  246 NLRRLNLSGNK-ITELNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHA  323 (1255)
T ss_pred             hhheeccCcCc-eeeeeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHh
Confidence            88888888762 122211   1235565555432 122222   123444444433333     3444555666666555


Q ss_pred             EEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCCCc
Q 011021          379 VCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLS  444 (495)
Q Consensus       379 ~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~  444 (495)
                      ..+.      ++.+|+.+..|..|++|.++....-..  |+.+.-+     +.|+.|++..|+++.
T Consensus       324 anN~------LElVPEglcRC~kL~kL~L~~NrLiTL--PeaIHlL-----~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  324 ANNK------LELVPEGLCRCVKLQKLKLDHNRLITL--PEAIHLL-----PDLKVLDLRENPNLV  376 (1255)
T ss_pred             hccc------cccCchhhhhhHHHHHhcccccceeec--hhhhhhc-----CCcceeeccCCcCcc
Confidence            2221      567899999999999888876655544  8877655     889999999887433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.03  E-value=1.1e-12  Score=129.73  Aligned_cols=292  Identities=14%  Similarity=0.121  Sum_probs=143.9

Q ss_pred             cccccCcccccCCcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee--
Q 011021          157 TVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC--  233 (495)
Q Consensus       157 ~~~~lp~~l~~~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~--  233 (495)
                      .-..+|..+..+.+|++|.+.+|++.... ....+|+|+.+.+..|.+...+++.-+.....|..|+|++|.. +..+  
T Consensus        43 ~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL-~EvP~~  121 (1255)
T KOG0444|consen   43 KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQL-REVPTN  121 (1255)
T ss_pred             hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhh-hhcchh
Confidence            34456666666677777777766655433 4455666666666666663333443344555666666666542 1111  


Q ss_pred             ecCCCCccEEEecccc--ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCC
Q 011021          234 VSKASKLKIMEIRSFS--EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSL  311 (495)
Q Consensus       234 i~~l~~L~~L~i~~c~--~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L  311 (495)
                      +...+++-.|+++.+.  .-...+.++...|-.|+++.+.. ...+..+..+.+|++|+|++|.+.-.-+.++ +...+|
T Consensus       122 LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL-e~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL-PsmtsL  199 (1255)
T KOG0444|consen  122 LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL-EMLPPQIRRLSMLQTLKLSNNPLNHFQLRQL-PSMTSL  199 (1255)
T ss_pred             hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh-hhcCHHHHHHhhhhhhhcCCChhhHHHHhcC-ccchhh
Confidence            1123455556665553  11112223444555555552222 2222233345556666666555443333332 234445


Q ss_pred             cEEEecCC-CCCcccccc--------------------------ccccceEEeccCCCccEEecc---CCccceeeeccc
Q 011021          312 EDLFVTRC-CLPGKIKIS--------------------------SNQLKNLLFRSCKYLKVIDVD---APNLLLFTYEFN  361 (495)
Q Consensus       312 ~~L~L~~~-~~~~~i~~~--------------------------~~~L~~L~l~~c~~l~~l~~~---~p~L~~l~~~~~  361 (495)
                      +.|++++. ..+..++.+                          .++|++|.+++. .++.+...   -.++++++++.+
T Consensus       200 ~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrN  278 (1255)
T KOG0444|consen  200 SVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRN  278 (1255)
T ss_pred             hhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccc
Confidence            55555443 112222222                          223333333321 12222211   123344444444


Q ss_pred             cc---ceEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEE
Q 011021          362 PI---PIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELH  438 (495)
Q Consensus       362 ~~---~~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~  438 (495)
                      ++   |.....++.|++|....+..  +  +..+|..++++..|+.+.......+.+  |+.+..+     +.|+.|.+.
T Consensus       279 QLt~LP~avcKL~kL~kLy~n~NkL--~--FeGiPSGIGKL~~Levf~aanN~LElV--PEglcRC-----~kL~kL~L~  347 (1255)
T KOG0444|consen  279 QLTVLPDAVCKLTKLTKLYANNNKL--T--FEGIPSGIGKLIQLEVFHAANNKLELV--PEGLCRC-----VKLQKLKLD  347 (1255)
T ss_pred             hhccchHHHhhhHHHHHHHhccCcc--c--ccCCccchhhhhhhHHHHhhccccccC--chhhhhh-----HHHHHhccc
Confidence            42   22333455565555532221  1  456777788888887555544444555  8888777     788888888


Q ss_pred             ecCCCccHHHHHHHHhhhccCCeeEEeec
Q 011021          439 TNVPLSDYETLLDCVFWICHPRTLRVNVM  467 (495)
Q Consensus       439 ~~~~~~~~~~l~~~l~~~~~l~~l~i~~~  467 (495)
                      .|.- ..+|   +++.-++-++.|.+..-
T Consensus       348 ~NrL-iTLP---eaIHlL~~l~vLDlreN  372 (1255)
T KOG0444|consen  348 HNRL-ITLP---EAIHLLPDLKVLDLREN  372 (1255)
T ss_pred             ccce-eech---hhhhhcCCcceeeccCC
Confidence            6643 3333   34444667777777543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.01  E-value=2.6e-09  Score=113.31  Aligned_cols=263  Identities=16%  Similarity=0.043  Sum_probs=163.0

Q ss_pred             cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEE
Q 011021          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L  221 (495)
                      .+-..|+  +..  ..-..+|..+.  ++|+.|.+.+|.++..+  ...++|++|++++|.++.  ++.   ..+.|++|
T Consensus       201 ~~~~~Ld--Ls~--~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP--~lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~L  267 (788)
T PRK15387        201 NGNAVLN--VGE--SGLTTLPDCLP--AHITTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTS--LPV---LPPGLLEL  267 (788)
T ss_pred             CCCcEEE--cCC--CCCCcCCcchh--cCCCEEEccCCcCCCCC--CCCCCCcEEEecCCccCc--ccC---ccccccee
Confidence            4455555  332  23346787664  47999999999887644  246899999999998742  222   35789999


Q ss_pred             EEEecCCCcceeecCCCCccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHH
Q 011021          222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEF  301 (495)
Q Consensus       222 ~L~~c~~l~~~~i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  301 (495)
                      ++.+|.. ..+.. ..++|+.|++.+|.  +..+....++|+.|+++++.... .+.   ...+|+.|++++|.++.  +
T Consensus       268 ~Ls~N~L-~~Lp~-lp~~L~~L~Ls~N~--Lt~LP~~p~~L~~LdLS~N~L~~-Lp~---lp~~L~~L~Ls~N~L~~--L  337 (788)
T PRK15387        268 SIFSNPL-THLPA-LPSGLCKLWIFGNQ--LTSLPVLPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS--L  337 (788)
T ss_pred             eccCCch-hhhhh-chhhcCEEECcCCc--cccccccccccceeECCCCcccc-CCC---CcccccccccccCcccc--c
Confidence            9998853 32221 12578889988874  44444456789999998554322 111   13468888888877754  1


Q ss_pred             HHHhhcCCCCcEEEecCCCCCccccccccccceEEeccCCCccEEeccCCccceeeecccccceEeecCCCCceEEEEEe
Q 011021          302 NHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVCK  381 (495)
Q Consensus       302 ~~l~~~~~~L~~L~L~~~~~~~~i~~~~~~L~~L~l~~c~~l~~l~~~~p~L~~l~~~~~~~~~~~~~~~~L~~l~i~~~  381 (495)
                      ..   ..++|+.|++++| .+..++...++|+.|.+.+. .+..++-...+|+.++++++.+...-...++|+.|+++.+
T Consensus       338 P~---lp~~Lq~LdLS~N-~Ls~LP~lp~~L~~L~Ls~N-~L~~LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N  412 (788)
T PRK15387        338 PT---LPSGLQELSVSDN-QLASLPTLPSELYKLWAYNN-RLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGN  412 (788)
T ss_pred             cc---cccccceEecCCC-ccCCCCCCCcccceehhhcc-ccccCcccccccceEEecCCcccCCCCcccCCCEEEccCC
Confidence            11   1247899999876 34445544567777766543 3444433345788888888764411112457888888544


Q ss_pred             cccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCCCccHHH
Q 011021          382 GVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYET  448 (495)
Q Consensus       382 ~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~  448 (495)
                      .      +..+|...   +.|+.|++..+....+  |+.+..+     ++++.|++++|+-....+.
T Consensus       413 ~------LssIP~l~---~~L~~L~Ls~NqLt~L--P~sl~~L-----~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        413 R------LTSLPMLP---SGLLSLSVYRNQLTRL--PESLIHL-----SSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             c------CCCCCcch---hhhhhhhhccCccccc--ChHHhhc-----cCCCeEECCCCCCCchHHH
Confidence            3      33344433   3456556644444444  7777777     7888999998885554433

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.98  E-value=2.2e-11  Score=115.40  Aligned_cols=190  Identities=17%  Similarity=0.229  Sum_probs=126.9

Q ss_pred             CcceEEEEeccccCCC-C---CccCCCCCcEEEeeeEee-ChHHHHHHHhcCCCccEEEEEecCCCcceeec----CCCC
Q 011021          169 NSVTNLRLVWCRLEQP-F---DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHLCVS----KASK  239 (495)
Q Consensus       169 ~~L~~L~L~~c~l~~~-~---~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~----~l~~  239 (495)
                      ..|+.|.++||+-... +   ....+|++++|.+.++.. ++..+..+...|+.|+.|++..|..++...+.    +|++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            5789999999874322 2   446799999999999987 88999999999999999999999987765443    7899


Q ss_pred             ccEEEecccc----ccceEEEEeCCcceEEEEeecCCCCce----eEEeecCCCccEEEeec-cccChHHHHHHhhcCCC
Q 011021          240 LKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGARRPR----VVEVARSPHLKKLDLVS-VYFADNEFNHLISKFPS  310 (495)
Q Consensus       240 L~~L~i~~c~----~~l~~~~~~~p~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~~  310 (495)
                      |+.++++.|.    .++....-.+..++.+...  |.....    ...-+.++.+.++++.. +.+++.....+...+..
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~k--GC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~  295 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLK--GCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA  295 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhc--ccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence            9999999998    1222233345556666554  221111    11112355556666543 44777777777778888


Q ss_pred             CcEEEecCCCCCccc-----cccccccceEEeccCCCccE-----EeccCCccceeeecc
Q 011021          311 LEDLFVTRCCLPGKI-----KISSNQLKNLLFRSCKYLKV-----IDVDAPNLLLFTYEF  360 (495)
Q Consensus       311 L~~L~L~~~~~~~~i-----~~~~~~L~~L~l~~c~~l~~-----l~~~~p~L~~l~~~~  360 (495)
                      |+.|+.++|..+...     ...+++|+.+.+..|..+..     +.-+++.|+.++..+
T Consensus       296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~  355 (483)
T KOG4341|consen  296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEE  355 (483)
T ss_pred             hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccc
Confidence            888888888665533     34567888888888876532     222344444444443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.78  E-value=1.8e-09  Score=105.55  Aligned_cols=67  Identities=21%  Similarity=0.217  Sum_probs=33.6

Q ss_pred             ccCcccccCCcceEEEEeccccCC--CC------CccCCCCCcEEEeeeEeeCh---HHHHHHHhcCCCccEEEEEecC
Q 011021          160 TLPQAIFSANSVTNLRLVWCRLEQ--PF------DSIMLCSLKKLTLERVCLDE---QMVQKLASECPLLEDLCFSNCW  227 (495)
Q Consensus       160 ~lp~~l~~~~~L~~L~L~~c~l~~--~~------~~~~l~~L~~L~L~~~~~~~---~~l~~l~~~~p~Le~L~L~~c~  227 (495)
                      .++..+...++|++|+++++.+..  ..      ....+++|+.|+++++.+..   ..+..+..+ ++|++|++++|.
T Consensus        42 ~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~  119 (319)
T cd00116          42 ALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNG  119 (319)
T ss_pred             HHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCc
Confidence            344444445666666666655441  10      22345566666666666532   122222233 446666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.73  E-value=6.8e-09  Score=101.38  Aligned_cols=61  Identities=20%  Similarity=-0.037  Sum_probs=31.5

Q ss_pred             CCcceEEEEeccccCCCC------CccCCCCCcEEEeeeEeeC--hHHH---HHHHhcCCCccEEEEEecCC
Q 011021          168 ANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVCLD--EQMV---QKLASECPLLEDLCFSNCWG  228 (495)
Q Consensus       168 ~~~L~~L~L~~c~l~~~~------~~~~l~~L~~L~L~~~~~~--~~~l---~~l~~~~p~Le~L~L~~c~~  228 (495)
                      ..+|++|++++|.+....      .....+.|++|+++++.++  ...+   ...+..++.|++|++++|..
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~   93 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL   93 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence            345666666666653321      2234555666666666553  2222   22334455666666666543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.72  E-value=8.4e-09  Score=69.28  Aligned_cols=35  Identities=31%  Similarity=0.723  Sum_probs=31.0

Q ss_pred             CCCCChHHHHHHhcCCChhHHHhhhcccccchhhh
Q 011021           20 ISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLY   54 (495)
Q Consensus        20 is~LPd~vL~~Ils~L~~~d~~rts~lSkrWr~lw   54 (495)
                      |+.||+|++.+||++|+.+|.++++.|||+|+++.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~   35 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA   35 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999864

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.70  E-value=5.3e-08  Score=103.51  Aligned_cols=259  Identities=15%  Similarity=0.055  Sum_probs=164.5

Q ss_pred             CcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEeccc
Q 011021          169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSF  248 (495)
Q Consensus       169 ~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c  248 (495)
                      ..-..|+++++.+...|. .-.++|+.|++.+|.++.  ++   ...|.|++|++++|. +..++. ..++|+.|++.+|
T Consensus       201 ~~~~~LdLs~~~LtsLP~-~l~~~L~~L~L~~N~Lt~--LP---~lp~~Lk~LdLs~N~-LtsLP~-lp~sL~~L~Ls~N  272 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPD-CLPAHITTLVIPDNNLTS--LP---ALPPELRTLEVSGNQ-LTSLPV-LPPGLLELSIFSN  272 (788)
T ss_pred             CCCcEEEcCCCCCCcCCc-chhcCCCEEEccCCcCCC--CC---CCCCCCcEEEecCCc-cCcccC-cccccceeeccCC
Confidence            456788999988876442 113589999999998842  22   246899999999984 443332 2479999999888


Q ss_pred             cccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcccccc
Q 011021          249 SEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKIS  328 (495)
Q Consensus       249 ~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~~~  328 (495)
                      .  +..+....++|+.|+++.+... ..+.   ..++|+.|++++|.++.  +.   ...++|+.|.+.+|. ++.++..
T Consensus       273 ~--L~~Lp~lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~--Lp---~lp~~L~~L~Ls~N~-L~~LP~l  340 (788)
T PRK15387        273 P--LTHLPALPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS--LP---ALPSELCKLWAYNNQ-LTSLPTL  340 (788)
T ss_pred             c--hhhhhhchhhcCEEECcCCccc-cccc---cccccceeECCCCcccc--CC---CCcccccccccccCc-ccccccc
Confidence            4  3333333467889998855432 2222   25789999999988765  11   123468889888763 3445443


Q ss_pred             ccccceEEeccCCCccEEeccCCccceeeecccccceEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEE
Q 011021          329 SNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLS  408 (495)
Q Consensus       329 ~~~L~~L~l~~c~~l~~l~~~~p~L~~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~  408 (495)
                      ..+|+.|+++++ +++.++...++|+.+.+.++.+...-..+++|+.|+++.+.      +..+|..   .++|+.|+++
T Consensus       341 p~~Lq~LdLS~N-~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~------Lt~LP~l---~s~L~~LdLS  410 (788)
T PRK15387        341 PSGLQELSVSDN-QLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNR------LTSLPVL---PSELKELMVS  410 (788)
T ss_pred             ccccceEecCCC-ccCCCCCCCcccceehhhccccccCcccccccceEEecCCc------ccCCCCc---ccCCCEEEcc
Confidence            457899988764 45555444567777877776644111124578899885433      3334432   3568866664


Q ss_pred             EEecceecccccccccCCCCCCccceeEEEecCCCccHHHHHHHHhhhccCCeeEEeeccccc
Q 011021          409 LYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVMFEED  471 (495)
Q Consensus       409 ~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l~~~~~l~~l~i~~~~~~~  471 (495)
                      ......+  |..        |.+|+.|++++|.-. .+|   ..+..+++++.|.+.+..+++
T Consensus       411 ~N~LssI--P~l--------~~~L~~L~Ls~NqLt-~LP---~sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        411 GNRLTSL--PML--------PSGLLSLSVYRNQLT-RLP---ESLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             CCcCCCC--Ccc--------hhhhhhhhhccCccc-ccC---hHHhhccCCCeEECCCCCCCc
Confidence            4433322  321        256888899887633 344   445567889999987775444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=1.3e-09  Score=99.27  Aligned_cols=150  Identities=20%  Similarity=0.262  Sum_probs=81.5

Q ss_pred             CcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee--ecCCCCccEEEeccccccceEEE-----EeCCcceEE
Q 011021          193 LKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKASKLKIMEIRSFSEEIEIVE-----ISVPSLQQL  265 (495)
Q Consensus       193 L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~--i~~l~~L~~L~i~~c~~~l~~~~-----~~~p~L~~L  265 (495)
                      |+.|+|++..++...+..+++.|..|+.|.|.+...-+.+.  +..-.+|+.|+++.|. ++....     -+|..|..|
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s-G~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS-GFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc-ccchhHHHHHHHhhhhHhhc
Confidence            44444444444444444444444444444444443222211  1111344444444444 222211     145556666


Q ss_pred             EEeecCCCCc-eeEEeec-CCCccEEEeeccc--cChHHHHHHhhcCCCCcEEEecCCCCCccc----cccccccceEEe
Q 011021          266 TLLFYGARRP-RVVEVAR-SPHLKKLDLVSVY--FADNEFNHLISKFPSLEDLFVTRCCLPGKI----KISSNQLKNLLF  337 (495)
Q Consensus       266 ~l~~~~~~~~-~~~~~~~-~~~L~~L~l~~~~--~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i----~~~~~~L~~L~l  337 (495)
                      +++||+...+ +.+.+.+ -++|+.|+|+|+.  +....+..+...||+|..|++++|..+..-    ...++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            6665554221 1111112 3578888888765  334455667789999999999999766542    235788999999


Q ss_pred             ccCCCc
Q 011021          338 RSCKYL  343 (495)
Q Consensus       338 ~~c~~l  343 (495)
                      +.|..+
T Consensus       346 sRCY~i  351 (419)
T KOG2120|consen  346 SRCYDI  351 (419)
T ss_pred             hhhcCC
Confidence            998754

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=3.2e-09  Score=101.60  Aligned_cols=176  Identities=20%  Similarity=0.175  Sum_probs=120.1

Q ss_pred             ccCCcceEEEEeccccCCCC---CccCCCCCcEEEeeeEee-ChHHHHHHHhcCCCccEEEEEecCCCcc---eeecCCC
Q 011021          166 FSANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKH---LCVSKAS  238 (495)
Q Consensus       166 ~~~~~L~~L~L~~c~l~~~~---~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~l~~---~~i~~l~  238 (495)
                      .+.+.|+...|.++.+..++   ....||+++.|+|+++-+ .-..+..++..+|+||.|+|+.|.....   .....++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            34577888888888877665   466899999999999988 6667778889999999999999864321   1122468


Q ss_pred             CccEEEecccc---ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEE
Q 011021          239 KLKIMEIRSFS---EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLF  315 (495)
Q Consensus       239 ~L~~L~i~~c~---~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~  315 (495)
                      .|+.|.+.+|.   ..+..+...+|+|+.|.+..+...........-+..|++|+|+++.+-+.........+|.|+.|.
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            99999999996   233445567899999999855321111122234668899999988866544334456788888888


Q ss_pred             ecCCC--CCc-------cccccccccceEEeccCC
Q 011021          316 VTRCC--LPG-------KIKISSNQLKNLLFRSCK  341 (495)
Q Consensus       316 L~~~~--~~~-------~i~~~~~~L~~L~l~~c~  341 (495)
                      +..|.  .+.       .....++.|+.|.+...+
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~  312 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN  312 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence            88761  111       112246677777665443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.47  E-value=7.8e-08  Score=100.17  Aligned_cols=23  Identities=22%  Similarity=0.374  Sum_probs=11.8

Q ss_pred             cccCcccccCCcceEEEEecccc
Q 011021          159 YTLPQAIFSANSVTNLRLVWCRL  181 (495)
Q Consensus       159 ~~lp~~l~~~~~L~~L~L~~c~l  181 (495)
                      ..+|..+...++|++|+++++.+
T Consensus       104 ~~lP~~~~~lknl~~LdlS~N~f  126 (1081)
T KOG0618|consen  104 QSLPASISELKNLQYLDLSFNHF  126 (1081)
T ss_pred             hcCchhHHhhhcccccccchhcc
Confidence            44454444455555555555543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.44  E-value=1.6e-07  Score=100.39  Aligned_cols=177  Identities=16%  Similarity=0.098  Sum_probs=97.8

Q ss_pred             cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEE
Q 011021          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L  221 (495)
                      .+..+|.  +.  ......+|..+  .++|+.|+|++|.+...+ ...+++|++|++++|.++.  ++..+  .+.|+.|
T Consensus       178 ~~~~~L~--L~--~~~LtsLP~~I--p~~L~~L~Ls~N~LtsLP-~~l~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L  246 (754)
T PRK15370        178 NNKTELR--LK--ILGLTTIPACI--PEQITTLILDNNELKSLP-ENLQGNIKTLYANSNQLTS--IPATL--PDTIQEM  246 (754)
T ss_pred             cCceEEE--eC--CCCcCcCCccc--ccCCcEEEecCCCCCcCC-hhhccCCCEEECCCCcccc--CChhh--hccccEE
Confidence            4555555  32  22334566544  257889999998877544 2234689999998887742  22211  3478888


Q ss_pred             EEEecCCCcceeecCCCCccEEEeccccccceEEEE-eCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHH
Q 011021          222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEI-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE  300 (495)
Q Consensus       222 ~L~~c~~l~~~~i~~l~~L~~L~i~~c~~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  300 (495)
                      ++++|.. ..++..-..+|+.|+++++.  +..+.. -.++|+.|+++++.... .+..+  .++|+.|++++|.++.  
T Consensus       247 ~Ls~N~L-~~LP~~l~s~L~~L~Ls~N~--L~~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~Ls~N~Lt~--  318 (754)
T PRK15370        247 ELSINRI-TELPERLPSALQSLDLFHNK--ISCLPENLPEELRYLSVYDNSIRT-LPAHL--PSGITHLNVQSNSLTA--  318 (754)
T ss_pred             ECcCCcc-CcCChhHhCCCCEEECcCCc--cCccccccCCCCcEEECCCCcccc-Ccccc--hhhHHHHHhcCCcccc--
Confidence            8888863 23222212478888887653  332221 12467777777443321 12111  2367777777776653  


Q ss_pred             HHHHhhcCCCCcEEEecCCCCCcccccc-ccccceEEeccC
Q 011021          301 FNHLISKFPSLEDLFVTRCCLPGKIKIS-SNQLKNLLFRSC  340 (495)
Q Consensus       301 ~~~l~~~~~~L~~L~L~~~~~~~~i~~~-~~~L~~L~l~~c  340 (495)
                      +..  ...++|+.|.+.+|. +..++.. .++|+.|+++++
T Consensus       319 LP~--~l~~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N  356 (754)
T PRK15370        319 LPE--TLPPGLKTLEAGENA-LTSLPASLPPELQVLDVSKN  356 (754)
T ss_pred             CCc--cccccceeccccCCc-cccCChhhcCcccEEECCCC
Confidence            111  123577777777663 2333321 245666666554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.42  E-value=3.2e-07  Score=98.02  Aligned_cols=193  Identities=17%  Similarity=0.110  Sum_probs=80.3

Q ss_pred             cceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEecccc
Q 011021          170 SVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS  249 (495)
Q Consensus       170 ~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c~  249 (495)
                      +...|+++++.++..+.. -.++|+.|+|++|.++.  ++..+  +++|++|++.+|. +..++..-.++|+.|++++|.
T Consensus       179 ~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~Lts--LP~~l--~~nL~~L~Ls~N~-LtsLP~~l~~~L~~L~Ls~N~  252 (754)
T PRK15370        179 NKTELRLKILGLTTIPAC-IPEQITTLILDNNELKS--LPENL--QGNIKTLYANSNQ-LTSIPATLPDTIQEMELSINR  252 (754)
T ss_pred             CceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCc--CChhh--ccCCCEEECCCCc-cccCChhhhccccEEECcCCc
Confidence            345556655554433210 12356666666665531  11111  2456666666553 222221112356666666553


Q ss_pred             ccceEEEE-eCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCccccc-
Q 011021          250 EEIEIVEI-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI-  327 (495)
Q Consensus       250 ~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~~-  327 (495)
                        +..+.. ...+|+.|+++.+... ..+..+  .++|+.|++++|.++.- ...+   .++|+.|++.+|.. ..++. 
T Consensus       253 --L~~LP~~l~s~L~~L~Ls~N~L~-~LP~~l--~~sL~~L~Ls~N~Lt~L-P~~l---p~sL~~L~Ls~N~L-t~LP~~  322 (754)
T PRK15370        253 --ITELPERLPSALQSLDLFHNKIS-CLPENL--PEELRYLSVYDNSIRTL-PAHL---PSGITHLNVQSNSL-TALPET  322 (754)
T ss_pred             --cCcCChhHhCCCCEEECcCCccC-cccccc--CCCCcEEECCCCccccC-cccc---hhhHHHHHhcCCcc-ccCCcc
Confidence              212111 1234666666533221 112111  23566666665554420 0000   12455555555422 22221 


Q ss_pred             cccccceEEeccCCCccEEecc-CCccceeeecccccc-eEeecCCCCceEEEE
Q 011021          328 SSNQLKNLLFRSCKYLKVIDVD-APNLLLFTYEFNPIP-IISINVPCPWKVSFV  379 (495)
Q Consensus       328 ~~~~L~~L~l~~c~~l~~l~~~-~p~L~~l~~~~~~~~-~~~~~~~~L~~l~i~  379 (495)
                      ..++|+.|.+.+|. +..++-. .++|+.++++++.+. +...-.++|+.|+|+
T Consensus       323 l~~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs  375 (754)
T PRK15370        323 LPPGLKTLEAGENA-LTSLPASLPPELQVLDVSKNQITVLPETLPPTITTLDVS  375 (754)
T ss_pred             ccccceeccccCCc-cccCChhhcCcccEEECCCCCCCcCChhhcCCcCEEECC
Confidence            12355555555543 2222211 245555665555432 111112456666654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.33  E-value=7.9e-08  Score=100.16  Aligned_cols=260  Identities=17%  Similarity=0.094  Sum_probs=139.8

Q ss_pred             cccccCcccccCCcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCc-ceee
Q 011021          157 TVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK-HLCV  234 (495)
Q Consensus       157 ~~~~lp~~l~~~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~-~~~i  234 (495)
                      ....+|..+....+|+.|+++.+.+...+ ......+|++|.|.++..  ..++.-++...+|++|+++.+.... ...+
T Consensus        56 ~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l--~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i  133 (1081)
T KOG0618|consen   56 QISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRL--QSLPASISELKNLQYLDLSFNHFGPIPLVI  133 (1081)
T ss_pred             ccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchh--hcCchhHHhhhcccccccchhccCCCchhH
Confidence            34455555555666666666666554333 445566666666666655  2233334555666666666664322 1222


Q ss_pred             cCCCCccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEE
Q 011021          235 SKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDL  314 (495)
Q Consensus       235 ~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L  314 (495)
                      ..+..+..+...++. .+..+...  .++.+++..+.....+...+..+..  .|++.++.+..    -.+.++++|+.|
T Consensus       134 ~~lt~~~~~~~s~N~-~~~~lg~~--~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~----~dls~~~~l~~l  204 (1081)
T KOG0618|consen  134 EVLTAEEELAASNNE-KIQRLGQT--SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV----LDLSNLANLEVL  204 (1081)
T ss_pred             HhhhHHHHHhhhcch-hhhhhccc--cchhhhhhhhhcccchhcchhhhhe--eeecccchhhh----hhhhhccchhhh
Confidence            233344444443331 11111111  1333333322333334444444443  47887776652    124567788887


Q ss_pred             EecCCCCCccccccccccceEEeccCCCccEEecc-CCccceeeeccccc---ceEeecCCCCceEEEEEecccchhhhc
Q 011021          315 FVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVD-APNLLLFTYEFNPI---PIISINVPCPWKVSFVCKGVLNTHWYL  390 (495)
Q Consensus       315 ~L~~~~~~~~i~~~~~~L~~L~l~~c~~l~~l~~~-~p~L~~l~~~~~~~---~~~~~~~~~L~~l~i~~~~~~~~~~~~  390 (495)
                      .... ..+..+.+..++++.|...+|+-.+...-. ..++++++++.+.+   |.+...+++|+.|+++.+.      +.
T Consensus       205 ~c~r-n~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~------l~  277 (1081)
T KOG0618|consen  205 HCER-NQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNR------LV  277 (1081)
T ss_pred             hhhh-cccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchh------HH
Confidence            6664 345556667788888888887755322222 34577777777663   3445567788888774322      34


Q ss_pred             chHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecC
Q 011021          391 KLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNV  441 (495)
Q Consensus       391 ~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~  441 (495)
                      .++.-+-..++|+.|.+..+..+.+  |......     ..|.+|+++.|.
T Consensus       278 ~lp~ri~~~~~L~~l~~~~nel~yi--p~~le~~-----~sL~tLdL~~N~  321 (1081)
T KOG0618|consen  278 ALPLRISRITSLVSLSAAYNELEYI--PPFLEGL-----KSLRTLDLQSNN  321 (1081)
T ss_pred             hhHHHHhhhhhHHHHHhhhhhhhhC--CCccccc-----ceeeeeeehhcc
Confidence            4555555666666555544444444  5555444     667777777664

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=1.5e-07  Score=90.31  Aligned_cols=152  Identities=22%  Similarity=0.189  Sum_probs=84.2

Q ss_pred             cCCcceEEEEeccccCCCC---CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeec--CCCCcc
Q 011021          167 SANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVS--KASKLK  241 (495)
Q Consensus       167 ~~~~L~~L~L~~c~l~~~~---~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~--~l~~L~  241 (495)
                      ..++|+.|+|+.|++..+.   ....+++||.|.|++|.++...+..++..||.|+.|.+..|..+.....+  -+..|+
T Consensus       170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~  249 (505)
T KOG3207|consen  170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ  249 (505)
T ss_pred             hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence            3567777777777654432   23457777888888877777777777778888888888877543222221  245777


Q ss_pred             EEEecccc---ccceEEEEeCCcceEEEEeecCCCCc--eeE----EeecCCCccEEEeeccccChHHHHHHhhcCCCCc
Q 011021          242 IMEIRSFS---EEIEIVEISVPSLQQLTLLFYGARRP--RVV----EVARSPHLKKLDLVSVYFADNEFNHLISKFPSLE  312 (495)
Q Consensus       242 ~L~i~~c~---~~l~~~~~~~p~L~~L~l~~~~~~~~--~~~----~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~  312 (495)
                      .|+++++.   .......-..|.|+.|.++.+|...-  ...    ....+++|+.|.+..|.+.+-....-+...++|+
T Consensus       250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk  329 (505)
T KOG3207|consen  250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLK  329 (505)
T ss_pred             hccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhh
Confidence            77777665   11112223556666666664444110  000    1123566666666666554311111123345555


Q ss_pred             EEEecC
Q 011021          313 DLFVTR  318 (495)
Q Consensus       313 ~L~L~~  318 (495)
                      .|.+..
T Consensus       330 ~l~~~~  335 (505)
T KOG3207|consen  330 HLRITL  335 (505)
T ss_pred             hhhccc
Confidence            555443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.30  E-value=1.5e-09  Score=102.70  Aligned_cols=44  Identities=18%  Similarity=0.129  Sum_probs=34.7

Q ss_pred             HHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCCCc
Q 011021          394 KFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLS  444 (495)
Q Consensus       394 ~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~  444 (495)
                      ..++++..|..|++.-...+.+  |..++++     .++++|++.+|+...
T Consensus       499 ~~l~nm~nL~tLDL~nNdlq~I--Pp~Lgnm-----tnL~hLeL~gNpfr~  542 (565)
T KOG0472|consen  499 SGLKNMRNLTTLDLQNNDLQQI--PPILGNM-----TNLRHLELDGNPFRQ  542 (565)
T ss_pred             HHhhhhhhcceeccCCCchhhC--Chhhccc-----cceeEEEecCCccCC
Confidence            3588888888777755555555  9999999     999999999998543

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.28  E-value=2.1e-07  Score=62.83  Aligned_cols=37  Identities=41%  Similarity=0.765  Sum_probs=31.2

Q ss_pred             CCCCChHHHHHHhcCCChhHHHhhhcccccchhhhcc
Q 011021           20 ISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVS   56 (495)
Q Consensus        20 is~LPd~vL~~Ils~L~~~d~~rts~lSkrWr~lw~~   56 (495)
                      +++||+|++.+||++|+.+|.++++.|||+|+++...
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~   39 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS   39 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence            5679999999999999999999999999999998654

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.20  E-value=2.2e-09  Score=101.47  Aligned_cols=154  Identities=18%  Similarity=0.105  Sum_probs=70.1

Q ss_pred             ccCcccccCCcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCC
Q 011021          160 TLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKAS  238 (495)
Q Consensus       160 ~lp~~l~~~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~  238 (495)
                      .+|..++.|.+|..|++.++.+...+ ....+..|++|+...+-.  +.++.-+++...|+-|++..+....-..+.+|.
T Consensus       151 slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L--~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs  228 (565)
T KOG0472|consen  151 SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLL--ETLPPELGGLESLELLYLRRNKIRFLPEFPGCS  228 (565)
T ss_pred             cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhh--hcCChhhcchhhhHHHHhhhcccccCCCCCccH
Confidence            34444444444444444444433222 222244444444444332  112222344455555555555432222444566


Q ss_pred             CccEEEecccc-ccceEEE-EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEe
Q 011021          239 KLKIMEIRSFS-EEIEIVE-ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFV  316 (495)
Q Consensus       239 ~L~~L~i~~c~-~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L  316 (495)
                      .|++|.+..+. +.+.+-. .+.+++..|++.++.. ...+..+-.+.+|+.|+++++.++.  +..-++++ .|+.|.+
T Consensus       229 ~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl-ke~Pde~clLrsL~rLDlSNN~is~--Lp~sLgnl-hL~~L~l  304 (565)
T KOG0472|consen  229 LLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL-KEVPDEICLLRSLERLDLSNNDISS--LPYSLGNL-HLKFLAL  304 (565)
T ss_pred             HHHHHHhcccHHHhhHHHHhcccccceeeecccccc-ccCchHHHHhhhhhhhcccCCcccc--CCcccccc-eeeehhh
Confidence            66666665543 1111111 2556666666663332 2234343345566666666666554  11113344 5666666


Q ss_pred             cCC
Q 011021          317 TRC  319 (495)
Q Consensus       317 ~~~  319 (495)
                      .++
T Consensus       305 eGN  307 (565)
T KOG0472|consen  305 EGN  307 (565)
T ss_pred             cCC
Confidence            665

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.13  E-value=1.5e-06  Score=56.31  Aligned_cols=34  Identities=32%  Similarity=0.593  Sum_probs=31.6

Q ss_pred             CChHHHHHHhcCCChhHHHhhhcccccchhhhcc
Q 011021           23 LPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVS   56 (495)
Q Consensus        23 LPd~vL~~Ils~L~~~d~~rts~lSkrWr~lw~~   56 (495)
                      ||+|++.+||++|+.+|.++++.|||+|+.+...
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999987543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.11  E-value=6e-07  Score=78.29  Aligned_cols=128  Identities=17%  Similarity=0.141  Sum_probs=40.1

Q ss_pred             cCCcceEEEEeccccCCCCCcc-CCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce-ee-cCCCCccEE
Q 011021          167 SANSVTNLRLVWCRLEQPFDSI-MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL-CV-SKASKLKIM  243 (495)
Q Consensus       167 ~~~~L~~L~L~~c~l~~~~~~~-~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~-~i-~~l~~L~~L  243 (495)
                      ++.++++|+|.|+.++..-..+ .+.+|+.|+|++|.+..  ++. +..++.|++|.+++|....-. .+ ..+|+|++|
T Consensus        17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~--l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK--LEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred             cccccccccccccccccccchhhhhcCCCEEECCCCCCcc--ccC-ccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence            3456788888887765433333 56778888888877731  221 345677777777776532110 11 124555555


Q ss_pred             EeccccccceEEEEeCCcceEEEEeecCCCC-ceeEEeecCCCccEEEeeccccChH-HH-HHHhhcCCCCcEEEecCC
Q 011021          244 EIRSFSEEIEIVEISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDLVSVYFADN-EF-NHLISKFPSLEDLFVTRC  319 (495)
Q Consensus       244 ~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~-~~-~~l~~~~~~L~~L~L~~~  319 (495)
                      .+.++.                      ... .....+..+|+|+.|++.+|.++.. .. ..++..+|+|+.|+-...
T Consensus        94 ~L~~N~----------------------I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   94 YLSNNK----------------------ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             E-TTS-------------------------SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             ECcCCc----------------------CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence            554442                      111 1112345688888888888877642 11 223557888888876654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.03  E-value=4.8e-07  Score=84.63  Aligned_cols=41  Identities=29%  Similarity=0.412  Sum_probs=27.5

Q ss_pred             ccCCCCCcEEEeeeEee---ChHHHHHHHhcCCCccEEEEEecC
Q 011021          187 SIMLCSLKKLTLERVCL---DEQMVQKLASECPLLEDLCFSNCW  227 (495)
Q Consensus       187 ~~~l~~L~~L~L~~~~~---~~~~l~~l~~~~p~Le~L~L~~c~  227 (495)
                      ..++|.|++|+|+.|.+   +.+.+..++++|..|++|.+.+|.
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G  131 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG  131 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence            34566777777777777   334555667777777777777664

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.03  E-value=1.5e-06  Score=92.04  Aligned_cols=149  Identities=18%  Similarity=0.244  Sum_probs=106.5

Q ss_pred             CcceEEEEecccc-CCCC---CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEE
Q 011021          169 NSVTNLRLVWCRL-EQPF---DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME  244 (495)
Q Consensus       169 ~~L~~L~L~~c~l-~~~~---~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~  244 (495)
                      .+|++|+++|... ....   ....||+|++|.+.+..+..+.+..+..++|+|..|+|+++..-.-..++++++|+.|.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~  201 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS  201 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence            6788888888542 2111   34579999999999999966668888999999999999998754445566778888887


Q ss_pred             eccccccceE-----EEEeCCcceEEEEeecCCCCce------eEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcE
Q 011021          245 IRSFSEEIEI-----VEISVPSLQQLTLLFYGARRPR------VVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLED  313 (495)
Q Consensus       245 i~~c~~~l~~-----~~~~~p~L~~L~l~~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~  313 (495)
                      +.+-.  +..     --....+|+.|+++........      ...-..+|+|+.|+.++..+.++.+..+....|+|+.
T Consensus       202 mrnLe--~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  202 MRNLE--FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ  279 (699)
T ss_pred             ccCCC--CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence            76543  111     1135788999999843322111      0112348999999999999999888888888888888


Q ss_pred             EEecCC
Q 011021          314 LFVTRC  319 (495)
Q Consensus       314 L~L~~~  319 (495)
                      ...-+|
T Consensus       280 i~~~~~  285 (699)
T KOG3665|consen  280 IAALDC  285 (699)
T ss_pred             hhhhhh
Confidence            776544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.99  E-value=1.7e-06  Score=80.95  Aligned_cols=90  Identities=16%  Similarity=0.117  Sum_probs=50.4

Q ss_pred             CcccceEEEEEeccCCCCChhHHHHHHHHHHH--cCceEeEEEeecCCCcccccCc-------ccccCCcceEEEEeccc
Q 011021          110 KFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVE--NGVRELDFENITDENTVYTLPQ-------AIFSANSVTNLRLVWCR  180 (495)
Q Consensus       110 ~~~l~~l~l~~~~~~~~~~~~~~~~wi~~a~~--~~l~~L~l~l~~~~~~~~~lp~-------~l~~~~~L~~L~L~~c~  180 (495)
                      ...+.+++++-.     +...-..+|+..+.+  +.+++..+.-.+......++|.       .+..|+.|++|+|+.|.
T Consensus        29 ~~s~~~l~lsgn-----t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   29 MDSLTKLDLSGN-----TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             cCceEEEeccCC-----chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            344555555422     222356778877766  3444444211122222234443       33456788888888887


Q ss_pred             cCCCC------CccCCCCCcEEEeeeEeeC
Q 011021          181 LEQPF------DSIMLCSLKKLTLERVCLD  204 (495)
Q Consensus       181 l~~~~------~~~~l~~L~~L~L~~~~~~  204 (495)
                      +...+      -..++..|+.|.|.+|-++
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg  133 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCGLG  133 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence            65432      2345788888888888774

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.87  E-value=6.6e-07  Score=84.95  Aligned_cols=272  Identities=13%  Similarity=0.002  Sum_probs=144.7

Q ss_pred             CcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceee---cCCCCccEE
Q 011021          169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCV---SKASKLKIM  243 (495)
Q Consensus       169 ~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i---~~l~~L~~L  243 (495)
                      +.-+.++|..|.++..|  .+..+++||.|+|++|.++.-. +..+.+.+.|-+|.+.++..+++++-   .++.+|+.|
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~-p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIA-PDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcC-hHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            34577888888776544  6778889999999988873222 23356777888888888666665543   355666666


Q ss_pred             Eecccc--ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChH--------HHH---HHhhcCCC
Q 011021          244 EIRSFS--EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN--------EFN---HLISKFPS  310 (495)
Q Consensus       244 ~i~~c~--~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--------~~~---~l~~~~~~  310 (495)
                      .+..+.  ......--+.++|..|.+.++....-....+..+..++.+++.-+.+..+        ...   -..+.+..
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc  225 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC  225 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence            665443  11111112456666666653333222222444566666666654432110        000   00111111


Q ss_pred             CcEEEecCCCCCccccc-cc-cccceE---EeccCCCcc----EEeccCCccceeeecccccc----eEeecCCCCceEE
Q 011021          311 LEDLFVTRCCLPGKIKI-SS-NQLKNL---LFRSCKYLK----VIDVDAPNLLLFTYEFNPIP----IISINVPCPWKVS  377 (495)
Q Consensus       311 L~~L~L~~~~~~~~i~~-~~-~~L~~L---~l~~c~~l~----~l~~~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~  377 (495)
                      .....+.... ...+.. .+ ..++.+   ....|.-..    .-.-..|+|+.++++++++.    -.+..++.+++|.
T Consensus       226 ~~p~rl~~~R-i~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~  304 (498)
T KOG4237|consen  226 VSPYRLYYKR-INQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY  304 (498)
T ss_pred             cchHHHHHHH-hcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence            1111111100 000000 00 001111   001110000    00123677888888888754    3566788999999


Q ss_pred             EEEecccchhhhcch-HHHhccCCccceEEEEEEeccee-cccccccccCCCCCCccceeEEEecC--CCccHHHHHHHH
Q 011021          378 FVCKGVLNTHWYLKL-KKFLGVSKQIESLKLSLYSTKVL-YNLDELSECSPSLPLQVENLELHTNV--PLSDYETLLDCV  453 (495)
Q Consensus       378 i~~~~~~~~~~~~~l-~~~l~~l~~L~~L~l~~~~~~~~-~~p~~~~~~~~~~p~~L~~L~l~~~~--~~~~~~~l~~~l  453 (495)
                      +..+.      ++.+ ...++++..|+.|++  +.+... +.|..|...     .+|..|.+-.||  ..-.+.++.+.|
T Consensus       305 L~~N~------l~~v~~~~f~~ls~L~tL~L--~~N~it~~~~~aF~~~-----~~l~~l~l~~Np~~CnC~l~wl~~Wl  371 (498)
T KOG4237|consen  305 LTRNK------LEFVSSGMFQGLSGLKTLSL--YDNQITTVAPGAFQTL-----FSLSTLNLLSNPFNCNCRLAWLGEWL  371 (498)
T ss_pred             cCcch------HHHHHHHhhhccccceeeee--cCCeeEEEeccccccc-----ceeeeeehccCcccCccchHHHHHHH
Confidence            94332      3333 456789999995544  555544 568888777     889999999998  333455665655


Q ss_pred             hh
Q 011021          454 FW  455 (495)
Q Consensus       454 ~~  455 (495)
                      ..
T Consensus       372 r~  373 (498)
T KOG4237|consen  372 RK  373 (498)
T ss_pred             hh
Confidence            43

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.84  E-value=5.2e-06  Score=72.43  Aligned_cols=82  Identities=20%  Similarity=0.161  Sum_probs=36.8

Q ss_pred             cCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCC--cc-eeecCCCCccEE
Q 011021          167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGL--KH-LCVSKASKLKIM  243 (495)
Q Consensus       167 ~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l--~~-~~i~~l~~L~~L  243 (495)
                      .+.+|+.|++++|.+....+...++.|+.|++++|.++.-. +.+..+||+|++|.+.+|..-  .. ..+..+|+|+.|
T Consensus        40 ~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L  118 (175)
T PF14580_consen   40 TLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL  118 (175)
T ss_dssp             T-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred             hhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence            36789999999999887667788999999999999994311 223357999999999988642  22 233467888888


Q ss_pred             Eecccc
Q 011021          244 EIRSFS  249 (495)
Q Consensus       244 ~i~~c~  249 (495)
                      ++.+++
T Consensus       119 ~L~~NP  124 (175)
T PF14580_consen  119 SLEGNP  124 (175)
T ss_dssp             E-TT-G
T ss_pred             eccCCc
Confidence            888776

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.81  E-value=3.2e-07  Score=77.25  Aligned_cols=60  Identities=22%  Similarity=0.207  Sum_probs=34.3

Q ss_pred             cccCCcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEec
Q 011021          165 IFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNC  226 (495)
Q Consensus       165 l~~~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c  226 (495)
                      ++...+++.|.|+++.++..+ ....+.+|+.|++.+++++  .++.-++..|.|+.|++.-+
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmn   89 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMN   89 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchh
Confidence            455566666666666654433 5556666666666666652  23333555666666665544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.80  E-value=2.8e-06  Score=87.96  Aligned_cols=167  Identities=24%  Similarity=0.339  Sum_probs=102.8

Q ss_pred             cCceEeEEEeecCCC-cccccCcccccCCcceEEEEecc-ccCC-C-----CCccCCCCCcEEEeeeEe-eChHHHHHHH
Q 011021          142 NGVRELDFENITDEN-TVYTLPQAIFSANSVTNLRLVWC-RLEQ-P-----FDSIMLCSLKKLTLERVC-LDEQMVQKLA  212 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~-~~~~lp~~l~~~~~L~~L~L~~c-~l~~-~-----~~~~~l~~L~~L~L~~~~-~~~~~l~~l~  212 (495)
                      +.++++.  +..+.. ....+-.....++.|+.|++++| .... .     .....+++|+.|+++++. +++..+..+.
T Consensus       188 ~~L~~l~--l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  188 PLLKRLS--LSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             chhhHhh--hcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            5566666  432211 11113344566899999999873 2211 1     134567999999999988 6888888888


Q ss_pred             hcCCCccEEEEEecCCCcceeec----CCCCccEEEecccc----ccceEEEEeCCcceEEEEeecCCCCceeEEeecCC
Q 011021          213 SECPLLEDLCFSNCWGLKHLCVS----KASKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSP  284 (495)
Q Consensus       213 ~~~p~Le~L~L~~c~~l~~~~i~----~l~~L~~L~i~~c~----~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~  284 (495)
                      ..||.||+|.+..|..++...+.    +|++|++|++..|.    .++..+...+|+|+.|.+....          .|+
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~----------~c~  335 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN----------GCP  335 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC----------CCc
Confidence            88999999998888865543332    57889999999887    1233333457777776655111          155


Q ss_pred             CccEEEeeccccC--hHHHHHHhhcCCCCcEEEecCCC
Q 011021          285 HLKKLDLVSVYFA--DNEFNHLISKFPSLEDLFVTRCC  320 (495)
Q Consensus       285 ~L~~L~l~~~~~~--~~~~~~l~~~~~~L~~L~L~~~~  320 (495)
                      .++.+.+.+....  +.........+++++.+.+..|.
T Consensus       336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG  373 (482)
T ss_pred             cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence            5555555443322  12333334566666666666653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.74  E-value=3.1e-07  Score=77.33  Aligned_cols=67  Identities=19%  Similarity=0.141  Sum_probs=40.8

Q ss_pred             cccCcccccCCcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecC
Q 011021          159 YTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCW  227 (495)
Q Consensus       159 ~~lp~~l~~~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~  227 (495)
                      ..+|+.+....+|++|++.++.++..+ ....+|.|+.|++.-+..  ..++.-+..+|.||.|++.++.
T Consensus        46 ~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl--~~lprgfgs~p~levldltynn  113 (264)
T KOG0617|consen   46 TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL--NILPRGFGSFPALEVLDLTYNN  113 (264)
T ss_pred             eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh--hcCccccCCCchhhhhhccccc
Confidence            445666666677777777777665544 556677777777665554  1122334566777777776664

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.72  E-value=0.00013  Score=79.63  Aligned_cols=159  Identities=20%  Similarity=0.184  Sum_probs=71.5

Q ss_pred             hHHHHHHHHHHHcCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEee-ChHHH
Q 011021          130 PIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCL-DEQMV  208 (495)
Q Consensus       130 ~~~~~wi~~a~~~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~-~~~~l  208 (495)
                      ..+.-|++.....+-+. .  +.....+....|... +....+...+.++.+........++.|++|-+.++.. -....
T Consensus       488 Re~al~ias~~~~~~e~-~--iv~~~~~~~~~~~~~-~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is  563 (889)
T KOG4658|consen  488 REMALWIASDFGKQEEN-Q--IVSDGVGLSEIPQVK-SWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEIS  563 (889)
T ss_pred             HHHHHHHhccccccccc-e--EEECCcCcccccccc-chhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcC
Confidence            35666666544433333 2  222112223333322 2244555555555443333444555666666666541 01111


Q ss_pred             HHHHhcCCCccEEEEEecCCCccee--ecCCCCccEEEeccccccceEEEE---eCCcceEEEEeecCCCCceeEEeecC
Q 011021          209 QKLASECPLLEDLCFSNCWGLKHLC--VSKASKLKIMEIRSFSEEIEIVEI---SVPSLQQLTLLFYGARRPRVVEVARS  283 (495)
Q Consensus       209 ~~l~~~~p~Le~L~L~~c~~l~~~~--i~~l~~L~~L~i~~c~~~l~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~  283 (495)
                      ...+...|.|+.|++++|..++.++  ++.+-+||.|++.++.  +..+..   ....|.+|++...+.....+.....+
T Consensus       564 ~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~--I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L  641 (889)
T KOG4658|consen  564 GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG--ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLEL  641 (889)
T ss_pred             HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC--ccccchHHHHHHhhheeccccccccccccchhhhc
Confidence            1224456667777777666555432  3345566666666553  222221   22344555554322211112222235


Q ss_pred             CCccEEEeecc
Q 011021          284 PHLKKLDLVSV  294 (495)
Q Consensus       284 ~~L~~L~l~~~  294 (495)
                      ++|+.|.+.+.
T Consensus       642 ~~Lr~L~l~~s  652 (889)
T KOG4658|consen  642 QSLRVLRLPRS  652 (889)
T ss_pred             ccccEEEeecc
Confidence            56666655443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.58  E-value=9.1e-06  Score=84.11  Aligned_cols=125  Identities=22%  Similarity=0.282  Sum_probs=66.2

Q ss_pred             CCcceEEEEecccc-CCC---CCccCCCCCcEEEeeeE-ee---ChHHHHHHHhcCCCccEEEEEecCCCcceeec----
Q 011021          168 ANSVTNLRLVWCRL-EQP---FDSIMLCSLKKLTLERV-CL---DEQMVQKLASECPLLEDLCFSNCWGLKHLCVS----  235 (495)
Q Consensus       168 ~~~L~~L~L~~c~l-~~~---~~~~~l~~L~~L~L~~~-~~---~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~----  235 (495)
                      ++.|+.|.+.+|.- ...   +....+++|+.|+++++ ..   .......+...|+.|+.|++.+|..+++..+.    
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            56777777777642 221   13456677777777652 11   22223335566777777777777654443332    


Q ss_pred             CCCCccEEEecccc----ccceEEEEeCCcceEEEEeecCCC--CceeEEeecCCCccEEEee
Q 011021          236 KASKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGAR--RPRVVEVARSPHLKKLDLV  292 (495)
Q Consensus       236 ~l~~L~~L~i~~c~----~~l~~~~~~~p~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~  292 (495)
                      .|++|+.|.+.+|.    .++..+.-.+|+|++|+++++...  ........+|++++.|.+.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~  329 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL  329 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence            36677777766665    122333345677777777743331  1111112346666665543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.41  E-value=0.00011  Score=67.71  Aligned_cols=152  Identities=16%  Similarity=0.113  Sum_probs=99.7

Q ss_pred             ccCCcceEEEEeccccCCCC----CccCCCCCcEEEeeeEee-ChHHHHHHHhcCCCccEEEEEecCCCc---ceeecCC
Q 011021          166 FSANSVTNLRLVWCRLEQPF----DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLK---HLCVSKA  237 (495)
Q Consensus       166 ~~~~~L~~L~L~~c~l~~~~----~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~l~---~~~i~~l  237 (495)
                      +....+..|.+.+|.+....    ....+..++.|+|.+|.+ +...+..++.+.|.|+.|+|++|..-.   ..+. ..
T Consensus        42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~-p~  120 (418)
T KOG2982|consen   42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPL-PL  120 (418)
T ss_pred             ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcc-cc
Confidence            33445667778888876654    234678999999999999 677888999999999999999987532   3321 24


Q ss_pred             CCccEEEecccc---ccceEEEEeCCcceEEEEeecCCC-----CceeEEeecCCCccEEEeeccccC-hHHHHHHhhcC
Q 011021          238 SKLKIMEIRSFS---EEIEIVEISVPSLQQLTLLFYGAR-----RPRVVEVARSPHLKKLDLVSVYFA-DNEFNHLISKF  308 (495)
Q Consensus       238 ~~L~~L~i~~c~---~~l~~~~~~~p~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~  308 (495)
                      .+|+.|.+.+..   .......-..|.++.|.++.+...     ......  --+.+++|+..+|... +.....+...|
T Consensus       121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~--~s~~v~tlh~~~c~~~~w~~~~~l~r~F  198 (418)
T KOG2982|consen  121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED--WSTEVLTLHQLPCLEQLWLNKNKLSRIF  198 (418)
T ss_pred             cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc--cchhhhhhhcCCcHHHHHHHHHhHHhhc
Confidence            699999998775   222333335677777776643221     111111  1235666666655432 22334556679


Q ss_pred             CCCcEEEecCCC
Q 011021          309 PSLEDLFVTRCC  320 (495)
Q Consensus       309 ~~L~~L~L~~~~  320 (495)
                      ||+..+.++.|+
T Consensus       199 pnv~sv~v~e~P  210 (418)
T KOG2982|consen  199 PNVNSVFVCEGP  210 (418)
T ss_pred             ccchheeeecCc
Confidence            999999999884

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.37  E-value=1.6e-05  Score=73.03  Aligned_cols=128  Identities=17%  Similarity=0.162  Sum_probs=78.7

Q ss_pred             CCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEecccc-ccceEEEEeCCcceEEEE
Q 011021          189 MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTL  267 (495)
Q Consensus       189 ~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c~-~~l~~~~~~~p~L~~L~l  267 (495)
                      .+..|+.++|++|.++.  ++.-..-.|.++.|++++|.....-.+..+++|+.|+++++. ..+..+....-|+++|.+
T Consensus       282 TWq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hHhhhhhccccccchhh--hhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence            35678888888887722  223344578888888888865433334457788888888765 333333445556777777


Q ss_pred             eecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCC
Q 011021          268 LFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC  320 (495)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  320 (495)
                      ..+..  .....++++=+|..|++++|++....-.+-+.++|.|+.|.+.+++
T Consensus       360 a~N~i--E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  360 AQNKI--ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhhhH--hhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            62221  2222344555677777777777653333335677778887777764

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.36  E-value=3.5e-05  Score=70.90  Aligned_cols=61  Identities=20%  Similarity=0.297  Sum_probs=32.4

Q ss_pred             HHHHHhcCCCccEEEEEecCCC-cc---------eeecCCCCccEEEecccc-ccceEEEEeCCcceEEEEe
Q 011021          208 VQKLASECPLLEDLCFSNCWGL-KH---------LCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLL  268 (495)
Q Consensus       208 l~~l~~~~p~Le~L~L~~c~~l-~~---------~~i~~l~~L~~L~i~~c~-~~l~~~~~~~p~L~~L~l~  268 (495)
                      +..++.-|..|..|.+++..+- +.         ..++-+.+|+.+.++.|. ..+..+...-|.|+++...
T Consensus       174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~  245 (490)
T KOG1259|consen  174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVH  245 (490)
T ss_pred             hHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeee
Confidence            4445555666666666654331 10         111224566667776666 4455555556666666655

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.31  E-value=3e-05  Score=79.41  Aligned_cols=203  Identities=17%  Similarity=0.126  Sum_probs=111.8

Q ss_pred             cCCcccceEEEEEeccCCCCCh--hHHHHHHHHHHHcCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCC
Q 011021          108 KLKFCIQKFRLFLTFLDVKGSA--PIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF  185 (495)
Q Consensus       108 ~~~~~l~~l~l~~~~~~~~~~~--~~~~~wi~~a~~~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~  185 (495)
                      ..+.+++.|+.......  +..  ..+.+.++..  .+.+.+.+ ++.....+.. |-.++..++|++|.|++|.+...-
T Consensus        52 ~~g~~~~~f~a~~s~~a--ds~vl~qLq~i~d~l--qkt~~lkl-~~~pa~~pt~-pi~ifpF~sLr~LElrg~~L~~~~  125 (1096)
T KOG1859|consen   52 LSGAPVDYFRAYVSDNA--DSRVLEQLQRILDFL--QKTKVLKL-LPSPARDPTE-PISIFPFRSLRVLELRGCDLSTAK  125 (1096)
T ss_pred             cCCCCCceeEEecCCcc--cchHHHHHHHHHHHH--hhheeeee-cccCCCCCCC-CceeccccceeeEEecCcchhhhh
Confidence            35678888887765321  111  1222222222  34555552 2322223333 888899999999999999754311


Q ss_pred             Cc---------------------------------cCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce
Q 011021          186 DS---------------------------------IMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL  232 (495)
Q Consensus       186 ~~---------------------------------~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~  232 (495)
                      +.                                 .....|.+-+.++|.+  ..++.-+.-.|.||.|+|++|...+.-
T Consensus       126 GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L--~~mD~SLqll~ale~LnLshNk~~~v~  203 (1096)
T KOG1859|consen  126 GLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL--VLMDESLQLLPALESLNLSHNKFTKVD  203 (1096)
T ss_pred             hhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH--HhHHHHHHHHHHhhhhccchhhhhhhH
Confidence            10                                 0112334444444444  112222334577888888888654444


Q ss_pred             eecCCCCccEEEecccc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCC
Q 011021          233 CVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSL  311 (495)
Q Consensus       233 ~i~~l~~L~~L~i~~c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L  311 (495)
                      .+..|+.|++|+++.+. ..+..+....-.|+.|.++++..  .....+.++.+|+.|++++|-+.+..-...+..+..|
T Consensus       204 ~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l--~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L  281 (1096)
T KOG1859|consen  204 NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNAL--TTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSL  281 (1096)
T ss_pred             HHHhcccccccccccchhccccccchhhhhheeeeecccHH--HhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHH
Confidence            55567888888887654 22333333333478888873322  2233445677888888888776653322333445667


Q ss_pred             cEEEecCCC
Q 011021          312 EDLFVTRCC  320 (495)
Q Consensus       312 ~~L~L~~~~  320 (495)
                      +.|.|.+|+
T Consensus       282 ~~L~LeGNP  290 (1096)
T KOG1859|consen  282 IVLWLEGNP  290 (1096)
T ss_pred             HHHhhcCCc
Confidence            777777763

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.23  E-value=6.5e-05  Score=53.41  Aligned_cols=58  Identities=24%  Similarity=0.115  Sum_probs=35.0

Q ss_pred             CcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecC
Q 011021          169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCW  227 (495)
Q Consensus       169 ~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~  227 (495)
                      ++|++|++++|.+...+  .+.++++|++|+++++.+..- -...+.++|+|++|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCCc
Confidence            35677777777655433  455677777777777766211 11235567777777776653

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.21  E-value=0.00043  Score=63.86  Aligned_cols=182  Identities=16%  Similarity=0.140  Sum_probs=120.4

Q ss_pred             cCceEeEEEeecCCCc-ccccCcccccCCcceEEEEeccccCCCC-Cc-cCCCCCcEEEeeeEeeChHHHHHHHhcCCCc
Q 011021          142 NGVRELDFENITDENT-VYTLPQAIFSANSVTNLRLVWCRLEQPF-DS-IMLCSLKKLTLERVCLDEQMVQKLASECPLL  218 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~-~~~lp~~l~~~~~L~~L~L~~c~l~~~~-~~-~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L  218 (495)
                      ..+++++  +..+... -.++-..+-+.|.|+.|+|+.|.+..+. .. ....+|++|.|.+...+.......+...|.+
T Consensus        71 ~~v~elD--L~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   71 TDVKELD--LTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhh--cccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            4678888  4322111 1222333345799999999999887654 11 3567999999999998777788889999999


Q ss_pred             cEEEEEecCC----CcceeecC-CCCccEEEecccc----ccceEEEEeCCcceEEEEeecCC-CCceeEEeecCCCccE
Q 011021          219 EDLCFSNCWG----LKHLCVSK-ASKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGA-RRPRVVEVARSPHLKK  288 (495)
Q Consensus       219 e~L~L~~c~~----l~~~~i~~-l~~L~~L~i~~c~----~~l~~~~~~~p~L~~L~l~~~~~-~~~~~~~~~~~~~L~~  288 (495)
                      ++|+++.|..    +..-.+.. -+.++.|....|.    .....+.--.|++..+-+..+.. ..........+|.+-.
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            9999998832    22222211 2577888888776    12233334578888888874432 1222233445777778


Q ss_pred             EEeeccccChHHHHHHhhcCCCCcEEEecCCCCCccc
Q 011021          289 LDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI  325 (495)
Q Consensus       289 L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i  325 (495)
                      |.+..+++..-.-..-+.+||.|..|.+.+++..+.+
T Consensus       229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             hhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            8888888765333334578999999999998766554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.10  E-value=8.9e-05  Score=80.95  Aligned_cols=78  Identities=14%  Similarity=0.063  Sum_probs=40.2

Q ss_pred             CCcceEEEEeccc-cCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce-eec-CCCCccEE
Q 011021          168 ANSVTNLRLVWCR-LEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL-CVS-KASKLKIM  243 (495)
Q Consensus       168 ~~~L~~L~L~~c~-l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~-~i~-~l~~L~~L  243 (495)
                      .+.|++|+|++|. +...| ..+.+-+||+|+|+++.+.  .++.-+.++..|.+|++..+..+... .+. .+++|+.|
T Consensus       570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L  647 (889)
T KOG4658|consen  570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL  647 (889)
T ss_pred             CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence            4666666666653 22222 4455666666666666552  23333445556666666655443322 111 24556666


Q ss_pred             Eecc
Q 011021          244 EIRS  247 (495)
Q Consensus       244 ~i~~  247 (495)
                      .+..
T Consensus       648 ~l~~  651 (889)
T KOG4658|consen  648 RLPR  651 (889)
T ss_pred             Eeec
Confidence            5543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.09  E-value=0.00062  Score=67.03  Aligned_cols=69  Identities=14%  Similarity=0.207  Sum_probs=33.6

Q ss_pred             cCCCCcEEEecCCCCCccccccccccceEEeccCCCccEEecc-CCccceeeecccc-cceEeecCCCCceEEEE
Q 011021          307 KFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVD-APNLLLFTYEFNP-IPIISINVPCPWKVSFV  379 (495)
Q Consensus       307 ~~~~L~~L~L~~~~~~~~i~~~~~~L~~L~l~~c~~l~~l~~~-~p~L~~l~~~~~~-~~~~~~~~~~L~~l~i~  379 (495)
                      .+++++.|++++| .+..++.-.++|+.|.+.+|.++..+.-. .++|++|.+.++. ++.   -+++|+.|++.
T Consensus        50 ~~~~l~~L~Is~c-~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~s---LP~sLe~L~L~  120 (426)
T PRK15386         50 EARASGRLYIKDC-DIESLPVLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISG---LPESVRSLEIK  120 (426)
T ss_pred             HhcCCCEEEeCCC-CCcccCCCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccc---cccccceEEeC
Confidence            3455666666655 44444433335666666666555444322 2355555555542 210   12356666653

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.98  E-value=0.0014  Score=64.52  Aligned_cols=26  Identities=23%  Similarity=0.341  Sum_probs=12.7

Q ss_pred             CCCcEEEecCCCCCccccccccccceEEe
Q 011021          309 PSLEDLFVTRCCLPGKIKISSNQLKNLLF  337 (495)
Q Consensus       309 ~~L~~L~L~~~~~~~~i~~~~~~L~~L~l  337 (495)
                      ++|+.|.+.+|..+..++   +.|+.|.+
T Consensus        94 ~nLe~L~Ls~Cs~L~sLP---~sLe~L~L  119 (426)
T PRK15386         94 EGLEKLTVCHCPEISGLP---ESVRSLEI  119 (426)
T ss_pred             hhhhheEccCcccccccc---cccceEEe
Confidence            356666666554444332   34444544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.91  E-value=0.00021  Score=76.00  Aligned_cols=145  Identities=16%  Similarity=0.139  Sum_probs=89.4

Q ss_pred             CCCCcEEEeeeEee-ChHHHHHHHhcCCCccEEEEEecCCCcc---eeecCCCCccEEEeccccccceEEE--EeCCcce
Q 011021          190 LCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKH---LCVSKASKLKIMEIRSFSEEIEIVE--ISVPSLQ  263 (495)
Q Consensus       190 l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~l~~---~~i~~l~~L~~L~i~~c~~~l~~~~--~~~p~L~  263 (495)
                      -.+|+.|++++... ..+....+-..+|.|+.|.+.+-.....   ....++|+|.+|+|+++.  +..+.  -..++|+
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn--I~nl~GIS~LknLq  198 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN--ISNLSGISRLKNLQ  198 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC--ccCcHHHhccccHH
Confidence            46889999988766 6666777777899999999987543222   112357899999999885  22222  1567788


Q ss_pred             EEEEeecCCC-CceeEEeecCCCccEEEeeccccChH--HHH---HHhhcCCCCcEEEecCCCCCc----cccccccccc
Q 011021          264 QLTLLFYGAR-RPRVVEVARSPHLKKLDLVSVYFADN--EFN---HLISKFPSLEDLFVTRCCLPG----KIKISSNQLK  333 (495)
Q Consensus       264 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~---~l~~~~~~L~~L~L~~~~~~~----~i~~~~~~L~  333 (495)
                      .|.+.+-... ......+-.+.+|+.||++.......  ...   +....+|+|+.|+.++...-+    .+..+.|+|+
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ  278 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence            7777632221 12233445688888888886654331  122   223357888888888763322    2233455666


Q ss_pred             eEE
Q 011021          334 NLL  336 (495)
Q Consensus       334 ~L~  336 (495)
                      .+.
T Consensus       279 ~i~  281 (699)
T KOG3665|consen  279 QIA  281 (699)
T ss_pred             hhh
Confidence            553

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.46  E-value=0.002  Score=58.88  Aligned_cols=95  Identities=14%  Similarity=0.007  Sum_probs=49.1

Q ss_pred             HHHHHHHHHH-HcCceEeEEEeecCCCc---ccccCcccccCCcceEEEEeccccCC-------C-----CCccCCCCCc
Q 011021          131 IVDRWIRLAV-ENGVRELDFENITDENT---VYTLPQAIFSANSVTNLRLVWCRLEQ-------P-----FDSIMLCSLK  194 (495)
Q Consensus       131 ~~~~wi~~a~-~~~l~~L~l~l~~~~~~---~~~lp~~l~~~~~L~~L~L~~c~l~~-------~-----~~~~~l~~L~  194 (495)
                      ++...+.... ...+.+++  +..+..+   ...+...+.+-++|+..+++......       .     +....||.|+
T Consensus        18 Dvk~v~eel~~~d~~~evd--LSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~   95 (388)
T COG5238          18 DVKGVVEELEMMDELVEVD--LSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQ   95 (388)
T ss_pred             hhhHHHHHHHhhcceeEEe--ccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcce
Confidence            4444444432 35677777  4432211   11223333334666666666532100       0     0234677777


Q ss_pred             EEEeeeEee---ChHHHHHHHhcCCCccEEEEEecC
Q 011021          195 KLTLERVCL---DEQMVQKLASECPLLEDLCFSNCW  227 (495)
Q Consensus       195 ~L~L~~~~~---~~~~l~~l~~~~p~Le~L~L~~c~  227 (495)
                      +.+|+.|.+   ..+.+..+++....|+.|.+.+|.
T Consensus        96 ~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG  131 (388)
T COG5238          96 KVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG  131 (388)
T ss_pred             eeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence            777777766   234455566677777777776663

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.42  E-value=8.6e-05  Score=70.94  Aligned_cols=49  Identities=20%  Similarity=0.180  Sum_probs=38.3

Q ss_pred             CCcccccCccccc-CCcceEEEEeccccCCCC--CccCCCCCcEEEeee-Eee
Q 011021          155 ENTVYTLPQAIFS-ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLER-VCL  203 (495)
Q Consensus       155 ~~~~~~lp~~l~~-~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~-~~~  203 (495)
                      ......+|+..|+ .++|+.|+|++|.++.-.  .+.++++|.+|.+.+ +.+
T Consensus        76 qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI  128 (498)
T KOG4237|consen   76 QNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI  128 (498)
T ss_pred             cCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence            3456788887776 699999999999875432  677899999998887 666

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.29  E-value=0.0022  Score=64.57  Aligned_cols=145  Identities=19%  Similarity=0.144  Sum_probs=77.3

Q ss_pred             CCcceEEEEeccccCCCCCcc-CC-CCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeec-CCCCccEEE
Q 011021          168 ANSVTNLRLVWCRLEQPFDSI-ML-CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVS-KASKLKIME  244 (495)
Q Consensus       168 ~~~L~~L~L~~c~l~~~~~~~-~l-~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~-~l~~L~~L~  244 (495)
                      .+.++.|++.++.+...+... .+ ++|+.|+++++.+..  +..-+..+|.|+.|.+.+|......... ..+.|+.|.
T Consensus       115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~  192 (394)
T COG4886         115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD  192 (394)
T ss_pred             ccceeEEecCCcccccCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence            356777777776655444333 33 277777777776632  2123556777777777777643322222 456777777


Q ss_pred             eccccccceEEEE---eCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCC
Q 011021          245 IRSFSEEIEIVEI---SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (495)
Q Consensus       245 i~~c~~~l~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~  319 (495)
                      ++++.  +..+..   ....|+++.++.+. ....+..+..+.++..+.+.++.+.+.  .......++++.|++.++
T Consensus       193 ls~N~--i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~--~~~~~~l~~l~~L~~s~n  265 (394)
T COG4886         193 LSGNK--ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDL--PESIGNLSNLETLDLSNN  265 (394)
T ss_pred             ccCCc--cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeeec--cchhccccccceeccccc
Confidence            77663  333332   22236666666331 112233344555555555555554431  223345566777766655

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.20  E-value=0.00071  Score=48.00  Aligned_cols=39  Identities=23%  Similarity=0.298  Sum_probs=20.2

Q ss_pred             eecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCC
Q 011021          280 VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (495)
Q Consensus       280 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~  319 (495)
                      +.++++|+.|+++++.++.- ..+.+.++++|+.|++++|
T Consensus        21 f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen   21 FSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSS
T ss_pred             HcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCC
Confidence            34556666666665555431 1122345566666666654

...

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.17  E-value=0.00054  Score=62.29  Aligned_cols=83  Identities=22%  Similarity=0.118  Sum_probs=61.8

Q ss_pred             cCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEee-ChHHHHHHHhcCCCccEEEEEecCCC--cce-eecCCCCccE
Q 011021          167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGL--KHL-CVSKASKLKI  242 (495)
Q Consensus       167 ~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~l--~~~-~i~~l~~L~~  242 (495)
                      ....|+.|++.++.+++...+..+|+||+|.++.+.+ ....+.-++..||+|.+|++++|..-  .++ ....+++|.+
T Consensus        41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS  120 (260)
T ss_pred             cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence            3567888888888877655677889999999999955 33445566778899999999999752  222 2235678888


Q ss_pred             EEecccc
Q 011021          243 MEIRSFS  249 (495)
Q Consensus       243 L~i~~c~  249 (495)
                      |++.+|.
T Consensus       121 Ldl~n~~  127 (260)
T KOG2739|consen  121 LDLFNCS  127 (260)
T ss_pred             hhcccCC
Confidence            8888886

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.14  E-value=0.0004  Score=63.49  Aligned_cols=96  Identities=20%  Similarity=0.239  Sum_probs=67.9

Q ss_pred             CCCccEEEeccccccceEEEE--eCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEE
Q 011021          237 ASKLKIMEIRSFSEEIEIVEI--SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDL  314 (495)
Q Consensus       237 l~~L~~L~i~~c~~~l~~~~~--~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L  314 (495)
                      +.+.++|+.++|  ++..+.+  ..|.||.|.++-+..  .....+..|.+|++|+|..|.+.+-.-...+.++|+|++|
T Consensus        18 l~~vkKLNcwg~--~L~DIsic~kMp~lEVLsLSvNkI--ssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGC--GLDDISICEKMPLLEVLSLSVNKI--SSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCC--CccHHHHHHhcccceeEEeecccc--ccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            346677777777  4554443  688999999984443  2344566899999999998888774434457899999999


Q ss_pred             EecCCCCCccccc--------cccccceEE
Q 011021          315 FVTRCCLPGKIKI--------SSNQLKNLL  336 (495)
Q Consensus       315 ~L~~~~~~~~i~~--------~~~~L~~L~  336 (495)
                      .|..|+..+.-+.        ..|+|++|+
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            9999876654322        357777773

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.04  E-value=0.003  Score=63.59  Aligned_cols=168  Identities=21%  Similarity=0.167  Sum_probs=112.5

Q ss_pred             CceEeEEEeecCCCcccccCcccccCC-cceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccE
Q 011021          143 GVRELDFENITDENTVYTLPQAIFSAN-SVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED  220 (495)
Q Consensus       143 ~l~~L~l~l~~~~~~~~~lp~~l~~~~-~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  220 (495)
                      .+..+.  +  .......+|......+ +|+.|+++++.+...+ ....+++|+.|+++.+.+.+  +.......+.|+.
T Consensus       117 ~l~~L~--l--~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~  190 (394)
T COG4886         117 NLTSLD--L--DNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNN  190 (394)
T ss_pred             ceeEEe--c--CCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhh
Confidence            455555  3  2345677888777774 9999999999887653 57899999999999998843  4444447899999


Q ss_pred             EEEEecCCCcceeec--CCCCccEEEecccc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccC
Q 011021          221 LCFSNCWGLKHLCVS--KASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA  297 (495)
Q Consensus       221 L~L~~c~~l~~~~i~--~l~~L~~L~i~~c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  297 (495)
                      |.++++.. ..++..  ....|.+|.+.++. .......-...++..+.+..+.. ...+..++.+++++.|+++++.++
T Consensus       191 L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~-~~~~~~~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         191 LDLSGNKI-SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             eeccCCcc-ccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee-eeccchhccccccceecccccccc
Confidence            99999864 322222  33458899888773 11111112345555555441111 111345567888999999999887


Q ss_pred             hHHHHHHhhcCCCCcEEEecCCCC
Q 011021          298 DNEFNHLISKFPSLEDLFVTRCCL  321 (495)
Q Consensus       298 ~~~~~~l~~~~~~L~~L~L~~~~~  321 (495)
                      +...   .....+++.|+++++..
T Consensus       269 ~i~~---~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         269 SISS---LGSLTNLRELDLSGNSL  289 (394)
T ss_pred             cccc---ccccCccCEEeccCccc
Confidence            6322   56778999999988643

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.99  E-value=0.0044  Score=40.50  Aligned_cols=34  Identities=18%  Similarity=0.106  Sum_probs=13.8

Q ss_pred             cceEEEEeccccCCCCC-ccCCCCCcEEEeeeEee
Q 011021          170 SVTNLRLVWCRLEQPFD-SIMLCSLKKLTLERVCL  203 (495)
Q Consensus       170 ~L~~L~L~~c~l~~~~~-~~~l~~L~~L~L~~~~~  203 (495)
                      +|++|++++|.+...+. ..+|++|+.|+++++.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence            34455555544443222 34444444444444433

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.98  E-value=0.0018  Score=56.62  Aligned_cols=91  Identities=19%  Similarity=0.219  Sum_probs=67.2

Q ss_pred             ccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEee-ChHHHHHHHhcCCCccEEEEEecCCCcceee
Q 011021          158 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHLCV  234 (495)
Q Consensus       158 ~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i  234 (495)
                      .+.+|..-..--.++.++-+++.+...+  ...+++.++.|.+.+|.. ++..++.+-.-.|+||.|+|++|+.+++-.+
T Consensus        90 ~~~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL  169 (221)
T KOG3864|consen   90 YFSLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL  169 (221)
T ss_pred             eecCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH
Confidence            3466655444456778887777654333  567889999999999976 8888998888899999999999998776443


Q ss_pred             ---cCCCCccEEEeccc
Q 011021          235 ---SKASKLKIMEIRSF  248 (495)
Q Consensus       235 ---~~l~~L~~L~i~~c  248 (495)
                         ..+++|+.|.+.+-
T Consensus       170 ~~L~~lknLr~L~l~~l  186 (221)
T KOG3864|consen  170 ACLLKLKNLRRLHLYDL  186 (221)
T ss_pred             HHHHHhhhhHHHHhcCc
Confidence               35677877777643

>PLN03150 hypothetical protein; Provisional

Probab=95.72  E-value=0.0095  Score=63.55  Aligned_cols=88  Identities=17%  Similarity=0.109  Sum_probs=60.0

Q ss_pred             CccEEEecccc-c-cceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEe
Q 011021          239 KLKIMEIRSFS-E-EIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFV  316 (495)
Q Consensus       239 ~L~~L~i~~c~-~-~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L  316 (495)
                      .++.|++.++. . .+......+++|+.|+++.+...+..+..++.+++|+.|++++|.+++..... +.++++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence            36777777765 1 11111125678899998866555556666778899999999998887654433 467889999999


Q ss_pred             cCCCCCccccc
Q 011021          317 TRCCLPGKIKI  327 (495)
Q Consensus       317 ~~~~~~~~i~~  327 (495)
                      ++|...+.++.
T Consensus       498 s~N~l~g~iP~  508 (623)
T PLN03150        498 NGNSLSGRVPA  508 (623)
T ss_pred             cCCcccccCCh
Confidence            98865555543

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.72  E-value=0.016  Score=32.96  Aligned_cols=25  Identities=48%  Similarity=0.832  Sum_probs=22.3

Q ss_pred             CCcEEEeeeEee-ChHHHHHHHhcCC
Q 011021          192 SLKKLTLERVCL-DEQMVQKLASECP  216 (495)
Q Consensus       192 ~L~~L~L~~~~~-~~~~l~~l~~~~p  216 (495)
                      +||+|+|..+.+ ++..++.++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            589999999999 5568999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.31  E-value=0.003  Score=57.52  Aligned_cols=83  Identities=22%  Similarity=0.235  Sum_probs=37.2

Q ss_pred             CCCccEEEecccc----ccceEEEEeCCcceEEEEeecCCC-CceeEEeecCCCccEEEeeccccCh--HHHHHHhhcCC
Q 011021          237 ASKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGAR-RPRVVEVARSPHLKKLDLVSVYFAD--NEFNHLISKFP  309 (495)
Q Consensus       237 l~~L~~L~i~~c~----~~l~~~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~  309 (495)
                      +|+|+.|.++.+.    .++......+|+|+.+.++.++.. ......+..+++|+.|++..+..+.  +--..++.-+|
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~  143 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP  143 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence            4566666665552    223333334566666666633321 1111223345566666666555332  10112223345


Q ss_pred             CCcEEEecCC
Q 011021          310 SLEDLFVTRC  319 (495)
Q Consensus       310 ~L~~L~L~~~  319 (495)
                      .|+.|+=..+
T Consensus       144 ~L~~LD~~dv  153 (260)
T KOG2739|consen  144 SLKYLDGCDV  153 (260)
T ss_pred             hhcccccccc
Confidence            5555554443

>PLN03150 hypothetical protein; Provisional

Probab=95.29  E-value=0.015  Score=61.97  Aligned_cols=79  Identities=18%  Similarity=0.101  Sum_probs=60.6

Q ss_pred             cceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce--eecCCCCccEEEe
Q 011021          170 SVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEI  245 (495)
Q Consensus       170 ~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~--~i~~l~~L~~L~i  245 (495)
                      .++.|+|+++.+....  ....+++|+.|+|++|.+.+ .++..+..++.|+.|+|++|...+.+  .+.++++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            3788999998875433  56789999999999998843 23444788999999999999754433  3457899999999


Q ss_pred             cccc
Q 011021          246 RSFS  249 (495)
Q Consensus       246 ~~c~  249 (495)
                      .+|.
T Consensus       498 s~N~  501 (623)
T PLN03150        498 NGNS  501 (623)
T ss_pred             cCCc
Confidence            9875

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.27  E-value=0.025  Score=49.71  Aligned_cols=60  Identities=22%  Similarity=0.159  Sum_probs=35.5

Q ss_pred             CCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEee-ChHHHHHHHhcCCCccEEEEEecCC
Q 011021          168 ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWG  228 (495)
Q Consensus       168 ~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~  228 (495)
                      .+.|..|.|.+|+++...  ....+|+|+.|.|.+|++ .-+.++. +..||.|++|.+-+++.
T Consensus        63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv  125 (233)
T KOG1644|consen   63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPV  125 (233)
T ss_pred             ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCch
Confidence            466777777776654322  223566777777777766 2233333 34677777777776653

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.60  E-value=0.069  Score=46.99  Aligned_cols=78  Identities=15%  Similarity=0.089  Sum_probs=52.4

Q ss_pred             CcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeC--hHHHHHHHhcCCCccEEEEEecCCC--cc-eeecCCCCccEE
Q 011021          169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLD--EQMVQKLASECPLLEDLCFSNCWGL--KH-LCVSKASKLKIM  243 (495)
Q Consensus       169 ~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~--~~~l~~l~~~~p~Le~L~L~~c~~l--~~-~~i~~l~~L~~L  243 (495)
                      .....++|+++.+.....+..++.|.+|.|.+|.++  +..+.   ...|+|..|.+.+|...  ++ ....+||+|++|
T Consensus        42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~---~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLD---TFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchhhcccCCCccccceEEecCCcceeeccchh---hhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            455677888887665556778899999999999883  22333   35688899999887542  22 123356677776


Q ss_pred             Eecccc
Q 011021          244 EIRSFS  249 (495)
Q Consensus       244 ~i~~c~  249 (495)
                      .+-++.
T Consensus       119 tll~Np  124 (233)
T KOG1644|consen  119 TLLGNP  124 (233)
T ss_pred             eecCCc
Confidence            666554

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=94.21  E-value=0.014  Score=54.74  Aligned_cols=40  Identities=28%  Similarity=0.610  Sum_probs=36.7

Q ss_pred             ccCCCcCCCCC----hHHHHHHhcCCChhHHHhhhcccccchhh
Q 011021           14 VVAMDRISELP----TFIIHHLMSYLSAKEVARTSVLSKKWNQL   53 (495)
Q Consensus        14 ~~~~d~is~LP----d~vL~~Ils~L~~~d~~rts~lSkrWr~l   53 (495)
                      +-..|.|+.||    |++-..|||+|+..+++.+-.|||+|+++
T Consensus        69 mLqrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~  112 (499)
T KOG0281|consen   69 MLQRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV  112 (499)
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence            34579999999    99999999999999999999999999963

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=94.16  E-value=0.059  Score=35.14  Aligned_cols=34  Identities=29%  Similarity=0.450  Sum_probs=24.2

Q ss_pred             CCccEEEeeccccChHHHHHHhhcCCCCcEEEecCC
Q 011021          284 PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (495)
Q Consensus       284 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~  319 (495)
                      ++|++|+++++.+++  +...+.++++|+.|++++|
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCC
Confidence            468888888888876  3333578888888888887

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=93.73  E-value=0.13  Score=47.35  Aligned_cols=48  Identities=21%  Similarity=0.171  Sum_probs=29.2

Q ss_pred             CccceeEEEecCCCccHHHHHHHHhhhcc-CCeeEEeeccccchhHHHH
Q 011021          430 LQVENLELHTNVPLSDYETLLDCVFWICH-PRTLRVNVMFEEDHKFITV  477 (495)
Q Consensus       430 ~~L~~L~l~~~~~~~~~~~l~~~l~~~~~-l~~l~i~~~~~~~~~~~~~  477 (495)
                      .+|+.|+|..|.........+..++..++ |.-|.+++|-++..+--++
T Consensus       214 ~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v  262 (388)
T COG5238         214 HSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSV  262 (388)
T ss_pred             CcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHH
Confidence            66777777777654444455555555554 4777888885555554433

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=93.40  E-value=0.0019  Score=64.87  Aligned_cols=155  Identities=19%  Similarity=0.136  Sum_probs=73.9

Q ss_pred             ccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcc-eeecCCC
Q 011021          160 TLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH-LCVSKAS  238 (495)
Q Consensus       160 ~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~-~~i~~l~  238 (495)
                      .+|..+.+...|++|+|+.+.+...+....+--|+.|-++++.++.-  +.-+...+.|..|+.+.|....- -.+.++.
T Consensus       112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~l--p~~ig~~~tl~~ld~s~nei~slpsql~~l~  189 (722)
T KOG0532|consen  112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSL--PEEIGLLPTLAHLDVSKNEIQSLPSQLGYLT  189 (722)
T ss_pred             ecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccC--CcccccchhHHHhhhhhhhhhhchHHhhhHH
Confidence            34445555555555555555544433222223355555555554211  11122344555555555542211 1122345


Q ss_pred             CccEEEeccccccceEEE--EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHH-HhhcCCCCcEEE
Q 011021          239 KLKIMEIRSFSEEIEIVE--ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNH-LISKFPSLEDLF  315 (495)
Q Consensus       239 ~L~~L~i~~c~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~~L~~L~  315 (495)
                      +|+.|.+..+.  +..+.  +..-.|.+|+++ |......++.+.++..|+.|.|.+|.+.....+- .-+...=.|.|.
T Consensus       190 slr~l~vrRn~--l~~lp~El~~LpLi~lDfS-cNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~  266 (722)
T KOG0532|consen  190 SLRDLNVRRNH--LEDLPEELCSLPLIRLDFS-CNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLS  266 (722)
T ss_pred             HHHHHHHhhhh--hhhCCHHHhCCceeeeecc-cCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeec
Confidence            55555555543  11111  113357777777 4444556777777888888888877765421110 011233345566


Q ss_pred             ecCC
Q 011021          316 VTRC  319 (495)
Q Consensus       316 L~~~  319 (495)
                      +.-|
T Consensus       267 ~qA~  270 (722)
T KOG0532|consen  267 TQAC  270 (722)
T ss_pred             chhc
Confidence            6655

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=93.29  E-value=0.0095  Score=60.40  Aligned_cols=80  Identities=19%  Similarity=0.120  Sum_probs=41.6

Q ss_pred             cccCCcceEEEEeccccCCCCC-ccCCCCCcEEEeeeEeeC-hHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccE
Q 011021          165 IFSANSVTNLRLVWCRLEQPFD-SIMLCSLKKLTLERVCLD-EQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKI  242 (495)
Q Consensus       165 l~~~~~L~~L~L~~c~l~~~~~-~~~l~~L~~L~L~~~~~~-~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~  242 (495)
                      +...++|..|++.++.+..... ...+++|++|+++++.++ -..    +..++.|+.|++.+|..-..-....+++|+.
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~----l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~  166 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG----LSTLTLLKELNLSGNLISDISGLESLKSLKL  166 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc----hhhccchhhheeccCcchhccCCccchhhhc
Confidence            3445666666666666554443 455666666666666662 122    2234446666666665432222222444555


Q ss_pred             EEeccc
Q 011021          243 MEIRSF  248 (495)
Q Consensus       243 L~i~~c  248 (495)
                      +++.++
T Consensus       167 l~l~~n  172 (414)
T KOG0531|consen  167 LDLSYN  172 (414)
T ss_pred             ccCCcc
Confidence            555444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.23  E-value=0.017  Score=53.18  Aligned_cols=79  Identities=15%  Similarity=0.111  Sum_probs=57.2

Q ss_pred             cCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcc-------eeecCCCC
Q 011021          167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH-------LCVSKASK  239 (495)
Q Consensus       167 ~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~-------~~i~~l~~  239 (495)
                      ..+.|++|.|+-|.+.....+..|.+|+.|+|..|.+.+-.--..+.+.|+|+.|.|..|+-.+.       ..+.-+|+
T Consensus        39 kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPn  118 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPN  118 (388)
T ss_pred             hcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHccc
Confidence            35778999999888876656788999999999999883322223467999999999998764322       22334788


Q ss_pred             ccEEEe
Q 011021          240 LKIMEI  245 (495)
Q Consensus       240 L~~L~i  245 (495)
                      |++|+=
T Consensus       119 LkKLDn  124 (388)
T KOG2123|consen  119 LKKLDN  124 (388)
T ss_pred             chhccC
Confidence            888853

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=91.50  E-value=0.028  Score=56.98  Aligned_cols=81  Identities=16%  Similarity=0.096  Sum_probs=42.0

Q ss_pred             cccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee--ecCCCCccE
Q 011021          165 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKASKLKI  242 (495)
Q Consensus       165 l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~--i~~l~~L~~  242 (495)
                      +..+++|++|+++++.+....+...++.|+.|++++|.+..  +.. +..++.|+.+++.+|.....-.  ...+.+|+.
T Consensus       114 l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~--~~~-~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~  190 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISD--ISG-LESLKSLKLLDLSYNRIVDIENDELSELISLEE  190 (414)
T ss_pred             hhhhhcchheeccccccccccchhhccchhhheeccCcchh--ccC-CccchhhhcccCCcchhhhhhhhhhhhccchHH
Confidence            34456666666666665544445555556666666666521  111 2225566666666665432222  234455555


Q ss_pred             EEeccc
Q 011021          243 MEIRSF  248 (495)
Q Consensus       243 L~i~~c  248 (495)
                      +.+.++
T Consensus       191 l~l~~n  196 (414)
T KOG0531|consen  191 LDLGGN  196 (414)
T ss_pred             HhccCC
Confidence            555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=91.32  E-value=0.012  Score=59.36  Aligned_cols=66  Identities=17%  Similarity=0.123  Sum_probs=30.2

Q ss_pred             cccCcccccCCcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecC
Q 011021          159 YTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCW  227 (495)
Q Consensus       159 ~~lp~~l~~~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~  227 (495)
                      ..+|..++.++ |+.|-+++++++..+ ..+..+.|..|+.+.|.+  ..+..-+.+...|+.|+++.+.
T Consensus       134 S~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei--~slpsql~~l~slr~l~vrRn~  200 (722)
T KOG0532|consen  134 SHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI--QSLPSQLGYLTSLRDLNVRRNH  200 (722)
T ss_pred             hcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhh--hhchHHhhhHHHHHHHHHhhhh
Confidence            34444444443 555555555544333 333455555555555544  1222223344445555555544

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=91.30  E-value=0.12  Score=50.51  Aligned_cols=38  Identities=21%  Similarity=0.358  Sum_probs=33.5

Q ss_pred             cCCCCChHHHHHHhcCCC-hhHHHhhhcccccchhhhcc
Q 011021           19 RISELPTFIIHHLMSYLS-AKEVARTSVLSKKWNQLYVS   56 (495)
Q Consensus        19 ~is~LPd~vL~~Ils~L~-~~d~~rts~lSkrWr~lw~~   56 (495)
                      ..++||+|+|..|..+|+ .-|.+|.+.|||.||..-..
T Consensus         3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            367899999999999997 77999999999999986443

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=90.91  E-value=0.11  Score=48.54  Aligned_cols=35  Identities=17%  Similarity=0.352  Sum_probs=30.4

Q ss_pred             CcCCCCChHHHHHHhc-----CCChhHHHhhhcccccchh
Q 011021           18 DRISELPTFIIHHLMS-----YLSAKEVARTSVLSKKWNQ   52 (495)
Q Consensus        18 d~is~LPd~vL~~Ils-----~L~~~d~~rts~lSkrWr~   52 (495)
                      +.|+.||||||..||.     .++.++..++|.|||.|+-
T Consensus       105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~  144 (366)
T KOG2997|consen  105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK  144 (366)
T ss_pred             hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence            4578899999999986     4567999999999999984

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.14  E-value=0.12  Score=45.54  Aligned_cols=61  Identities=23%  Similarity=0.234  Sum_probs=35.0

Q ss_pred             ecCCCccEEEeeccc-cChHHHHHHhhcCCCCcEEEecCCCCCccccc----cccccceEEeccCC
Q 011021          281 ARSPHLKKLDLVSVY-FADNEFNHLISKFPSLEDLFVTRCCLPGKIKI----SSNQLKNLLFRSCK  341 (495)
Q Consensus       281 ~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~~----~~~~L~~L~l~~c~  341 (495)
                      ..++.++.|.+..+. +.+..+..+....|+|+.|+|++|+.++.-..    .+++|+.|.+...+
T Consensus       122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence            345566666666555 33444555555667777777777766654432    24555555554443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=88.30  E-value=0.04  Score=57.44  Aligned_cols=13  Identities=23%  Similarity=0.248  Sum_probs=5.2

Q ss_pred             CCCcEEEeeeEee
Q 011021          191 CSLKKLTLERVCL  203 (495)
Q Consensus       191 ~~L~~L~L~~~~~  203 (495)
                      |.|+.|+|++|++
T Consensus       187 ~ale~LnLshNk~  199 (1096)
T KOG1859|consen  187 PALESLNLSHNKF  199 (1096)
T ss_pred             HHhhhhccchhhh
Confidence            3344444444433

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=83.74  E-value=0.66  Score=25.53  Aligned_cols=22  Identities=18%  Similarity=0.178  Sum_probs=12.9

Q ss_pred             CCCCcEEEeeeEeeChHHHHHH
Q 011021          190 LCSLKKLTLERVCLDEQMVQKL  211 (495)
Q Consensus       190 l~~L~~L~L~~~~~~~~~l~~l  211 (495)
                      +++|++|+|++|.++++++..+
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHh
Confidence            3677777777777766665543

...

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=82.94  E-value=0.58  Score=48.73  Aligned_cols=40  Identities=25%  Similarity=0.543  Sum_probs=37.1

Q ss_pred             ccCCCcCCCCChHHHHHHhcCCChhHHHhhhcccccchhh
Q 011021           14 VVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL   53 (495)
Q Consensus        14 ~~~~d~is~LPd~vL~~Ils~L~~~d~~rts~lSkrWr~l   53 (495)
                      ....|.|+.||-|+..+||++|+.++.++++.+|+.|+.+
T Consensus       102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            4567999999999999999999999999999999999864

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=82.20  E-value=1.1  Score=25.25  Aligned_cols=20  Identities=20%  Similarity=0.242  Sum_probs=8.9

Q ss_pred             CCCcEEEeeeEee-ChHHHHH
Q 011021          191 CSLKKLTLERVCL-DEQMVQK  210 (495)
Q Consensus       191 ~~L~~L~L~~~~~-~~~~l~~  210 (495)
                      |+|+.|+|++|.. ++.++..
T Consensus         2 ~~L~~L~l~~C~~itD~gl~~   22 (26)
T smart00367        2 PNLRELDLSGCTNITDEGLQA   22 (26)
T ss_pred             CCCCEeCCCCCCCcCHHHHHH
Confidence            4444444444432 4444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	495
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-04
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 2e-07
 Identities = 74/478 (15%), Positives = 148/478 (30%), Gaps = 126/478 (26%)

Query: 31  LMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQN----YFFPGASRLDYGSFC---VRK 83
             S LS +E+    +     +     F  L   Q      F     R++Y  F    ++ 
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK-FLMSPIKT 100

Query: 84  QNYSFSETVKKFMD-----------FVDASLVR---FCKLKFCIQKFR--LFLTFLDVKG 127
           +    S   + +++           F   ++ R   + KL+  + + R    +    V G
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160

Query: 128 S-----APIV--DRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCR 180
           S     A  V     ++  ++  +  L+ +N     TV  + Q +        +   W  
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-----YQIDPNWTS 215

Query: 181 LEQPFDSIMLCS------LKKLTLERV---CL-------DEQMVQKLASECPLL---EDL 221
                 +I L        L++L   +    CL       + +        C +L      
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275

Query: 222 CFSNCWGLKHLCVSKASKLKIMEIR-SFSEE------IEIVEISVPSLQQLTLLFYGARR 274
             ++      L  +  + + +     + + +      ++ ++     L            
Sbjct: 276 QVTD-----FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL------------ 318

Query: 275 PRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC--LPGKIKISSNQL 332
           PR V +  +P    +       A+      I    +  D +    C  L   I+ S N L
Sbjct: 319 PREV-LTTNPRRLSI------IAE-----SIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 333 KNLLFRSC-KYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPW--KVSFVCKGVLNTHWY 389
           +   +R     L V    A            IP I +++   W   +      V+N    
Sbjct: 367 EPAEYRKMFDRLSVFPPSA-----------HIPTILLSL--IWFDVIKSDVMVVVN---- 409

Query: 390 LKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYE 447
            KL K+  V KQ +   +S+ S   +Y L+   +             LH ++ +  Y 
Sbjct: 410 -KLHKYSLVEKQPKESTISIPS---IY-LELKVKLE-------NEYALHRSI-VDHYN 454

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 59/423 (13%), Positives = 128/423 (30%), Gaps = 124/423 (29%)

Query: 140 VENGVRELDFENITDENTVYTLPQAIFSANSVTNL-----------RLVWCRLEQPFDSI 188
            +  V   D +++ D      +P++I S   + ++           RL W  L +  + +
Sbjct: 26  EDAFVDNFDCKDVQD------MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79

Query: 189 MLCSLKKLTLERVCLD-EQMVQKLASEC--PLLEDLCFSNCWGLKHLCVSKASKL----- 240
                +K   E + ++ + ++  + +E   P +    +       +      +K      
Sbjct: 80  -----QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134

Query: 241 -KIMEIRSFSEEIEIVEISVPSLQQLT----LLFYG----ARRPRVVEVARSPHLKK--- 288
              +++R              +L +L     +L  G     +    ++V  S  ++    
Sbjct: 135 QPYLKLRQ-------------ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181

Query: 289 -----LDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLK---NLLFRSC 340
                L+L +    +     L      ++  + +R      IK+  + ++     L +S 
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 341 KY---LKVID-------VDAPNL----LLFTYEFNPIPIISINVPCPWKVSFVCKGVLNT 386
            Y   L V+         +A NL    LL T        +S        +      +  T
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL--T 299

Query: 387 HWYLK--LKKFLGVS--------KQIESLKLSLYSTKV-----------LYNLDELSECS 425
              +K  L K+L                 +LS+ +  +             N D+L+   
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT-- 357

Query: 426 PSLPLQVENLE---------------LHTNVPLSDYETLLDCVFWICHPRTLRVNVMFEE 470
             +   +  LE                  ++P      L   + W        V V+  +
Sbjct: 358 -IIESSLNVLEPAEYRKMFDRLSVFPPSAHIP---TILL--SLIW-FDVIKSDVMVVVNK 410

Query: 471 DHK 473
            HK
Sbjct: 411 LHK 413

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 6e-05
 Identities = 43/260 (16%), Positives = 83/260 (31%), Gaps = 53/260 (20%)

Query: 249 SEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKF 308
            EEI+ + +S  ++     LF+                K+ ++V  +  +     L   +
Sbjct: 48  KEEIDHIIMSKDAVSGTLRLFWTLLS------------KQEEMVQKFVEEV----LRINY 91

Query: 309 PSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLL----FTYEFNPIP 364
             L     T    P  +     + ++ L+   +     +V      L       E  P  
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151

Query: 365 IISIN--VPC--PWKVSFVCK--GVL-----NTHWYLKLKKFLGVSKQIESLKLSLYSTK 413
            + I+  +     W    VC    V         W L LK        +E L+  L   +
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQ-KLL-YQ 208

Query: 414 VLYNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRV--NVMFEED 471
           +  N    S+ S ++ L++ +++            L   +    +   L V  NV   ++
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQ----------AELRRLLKSKPYENCLLVLLNV---QN 255

Query: 472 HKFITVCYVLFDHQCVIVST 491
            K        F+  C I+ T
Sbjct: 256 AKAWNA----FNLSCKILLT 271

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 60/340 (17%), Positives = 104/340 (30%), Gaps = 80/340 (23%)

Query: 20  ISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSF 79
              LP  ++  + S L   E+ + S + K+W +L  S   L                   
Sbjct: 9   WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL-ASDESL-----------------WQ 50

Query: 80  CVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLA 139
            +     +    V   +            L   +  FR   +F+D   +       ++  
Sbjct: 51  TLDLTGKNLHPDVTGRL------------LSQGVIAFRCPRSFMDQPLAEHFSPFRVQH- 97

Query: 140 VENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIM-----LCSLK 194
                 +L    I       TL   +   + + NL L   RL    D I+       +L 
Sbjct: 98  -----MDLSNSVIEVS----TLHGILSQCSKLQNLSLEGLRL---SDPIVNTLAKNSNLV 145

Query: 195 KLTLERVC-LDEQMVQKLASECPLLEDLCFSNCW-----GLKHLCVSKASKLKIMEIRSF 248
           +L L       E  +Q L S C  L++L  S C+      ++      +  +  + +  +
Sbjct: 146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205

Query: 249 SEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKF 308
            +      +    L  L              V R P+L  LDL       N+      + 
Sbjct: 206 RK-----NLQKSDLSTL--------------VRRCPNLVHLDLSDSVMLKNDCFQEFFQL 246

Query: 309 PSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDV 348
             L+ L ++RC       I    L  L       LK + V
Sbjct: 247 NYLQHLSLSRCY-----DIIPETLLEL--GEIPTLKTLQV 279

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 51/362 (14%), Positives = 115/362 (31%), Gaps = 56/362 (15%)

Query: 20  ISELPTFIIHHLMSYL-SAKEVARTSVLSKKWNQ--------LYVSFPILDFDQNYF--F 68
                  +I  +M+Y+   K+    S++ ++W +        + ++             F
Sbjct: 13  CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRF 72

Query: 69  PGASRLDYGSFCVRKQNYSF-SETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKG 127
           P    L       R   ++   E    ++      +    +           L  +  + 
Sbjct: 73  PNLRSLK-LKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQ----------LKSVHFRR 121

Query: 128 SAPIVDRWIRLAVENG---VRELDF---ENITDENTVYTLPQAIFSANSVTNLRLVWCRL 181
              + D  +    +     +  L        T +     L   +     +  L +     
Sbjct: 122 M-IVSDLDLDRLAKARADDLETLKLDKCSGFTTD----GLLSIVTHCRKIKTLLMEESSF 176

Query: 182 EQPFDSIMLCSLKKLT-LERVCLD--------EQMVQKLASECPLLEDLCFSNCWGLKHL 232
            +     +    +  T LE +            + ++ +A  C  L  +   +   L+ +
Sbjct: 177 SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV 236

Query: 233 CV-SKASKLKIMEIRSFSEEIEIVE--ISVPSLQQLTLLFYGARRPRVVEV--ARSPHLK 287
                A+ L+     S +E+I + E  +++   ++L  L      P  + +    +  ++
Sbjct: 237 GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR 296

Query: 288 KLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVID 347
           KLDL+       +   LI K P+LE L            I    L+  L + CK LK + 
Sbjct: 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNV-------IGDRGLEV-LAQYCKQLKRLR 348

Query: 348 VD 349
           ++
Sbjct: 349 IE 350

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 25/174 (14%), Positives = 65/174 (37%), Gaps = 22/174 (12%)

Query: 192 SLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC-----------VSKASKL 240
            L+ + +    +  + ++ + +    L D         + +            +    KL
Sbjct: 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL 438

Query: 241 KIMEIRSFSEEIEIVEISV-----PSLQQLTLLFYGARRPRVVEVARS-PHLKKLDLVSV 294
           +          +  + +S      P+++ + L + G     ++E +R  P+L+KL++   
Sbjct: 439 RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC 498

Query: 295 YFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDV 348
            F++      ++K PSL  L+V       +  ++   L  +  R    +++I  
Sbjct: 499 CFSERAIAAAVTKLPSLRYLWVQGY----RASMTGQDLMQMA-RPYWNIELIPS 547

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 52/376 (13%), Positives = 122/376 (32%), Gaps = 53/376 (14%)

Query: 18  DRISELPTFIIHHLMSYL-SAKEVARTSVLSKKWNQ--------LYVSFPILDFDQNYF- 67
                 P  ++ H+ S++   K+    S++ K W +        +++             
Sbjct: 4   RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIR 63

Query: 68  -FPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVK 126
            FP    ++      +     F+     +  +V   +         +++ RL    +   
Sbjct: 64  RFPKVRSVE---LKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD 120

Query: 127 GSAPIVDRWIRLAVENGVRELDF---ENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQ 183
               I   +         + L     E  + +     L     +  ++  L L    ++ 
Sbjct: 121 CLELIAKSFKNF------KVLVLSSCEGFSTD----GLAAIAATCRNLKELDLRESDVDD 170

Query: 184 PFDSIMLC------SLKKLTLERVC--LDEQMVQKLASECPLLEDLCFSNCWGLKHLC-- 233
                +        SL  L +  +   +    +++L + CP L+ L  +    L+ L   
Sbjct: 171 VSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL 230

Query: 234 VSKASKLKIMEIRSFSEEI-----EIVEISVPSLQQLTLL--FYGARRPRVVEVARS-PH 285
           + +A +L+ +    ++ E+       + +++   ++L  L  F+ A    +  V      
Sbjct: 231 LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSR 290

Query: 286 LKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKV 345
           L  L+L        +   L+ + P L+ L+V          I    L+ L   +CK L+ 
Sbjct: 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-------IEDAGLEVLA-STCKDLRE 342

Query: 346 IDVDAPNLLLFTYEFN 361
           + V      +      
Sbjct: 343 LRVFPSEPFVMEPNVA 358

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 40/279 (14%), Positives = 90/279 (32%), Gaps = 51/279 (18%)

Query: 120 LTFLDVKGSAPIVDRWIRLAVENGVRELD---FENITDENTVYTLPQAIFSANSVTNLRL 176
           L  L +  + P+      L     + EL    +      +    L  A+     +  L  
Sbjct: 213 LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG 272

Query: 177 VWCRLEQPFDSI--MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWG------ 228
            W  +     ++  +   L  L L    +    + KL  +CP L+ L   +         
Sbjct: 273 FWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV 332

Query: 229 -------LKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPR---VV 278
                  L+ L V  +    +    + +E+  +V +S     +L  + Y  R+     ++
Sbjct: 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQ-GLVSVS-MGCPKLESVLYFCRQMTNAALI 390

Query: 279 EVARS-PHLKKLDLV----------SVYFADNEFNHLISKFPSLEDLFVTRC-CLPGKIK 326
            +AR+ P++ +  L           ++   D  F  ++     L  L ++          
Sbjct: 391 TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEY 450

Query: 327 ISSN--QLKNL--------------LFRSCKYLKVIDVD 349
           I +   +++ L              +   C  L+ +++ 
Sbjct: 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIR 489

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 7/34 (20%), Positives = 19/34 (55%)

Query: 20 ISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL 53
          ++ LP  +  +++S+LS  ++ +    +  WN+ 
Sbjct: 5  LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	495
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.72
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.71
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.69
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.68
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.66
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.66
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.65
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.63
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.63
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.63
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.62
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.62
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.61
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.61
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.61
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.6
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.6
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.6
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.6
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.6
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.6
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.59
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.58
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.58
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.57
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.56
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.56
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.55
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.55
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.53
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.53
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.53
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.53
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.5
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.49
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.49
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.48
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.48
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.48
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.48
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.47
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.46
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.46
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.45
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.44
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.42
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.42
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.4
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.4
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.39
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.39
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.36
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.36
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.34
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.31
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.3
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.28
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.26
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.25
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.2
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.2
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.12
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.1
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.07
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.05
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.03
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.02
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.0
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.0
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.99
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.99
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.99
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.98
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.98
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.97
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.96
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.88
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.85
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.84
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.76
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.71
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.68
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.66
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.66
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.64
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.61
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.58
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.55
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.53
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.51
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.49
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.48
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.45
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.43
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.41
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.41
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.39
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.35
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.32
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.3
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.3
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.22
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.12
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.03
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.02
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.99
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.99
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.95
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.89
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.86
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.85
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.84
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.84
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.81
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.8
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.78
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.73
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.64
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.61
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.59
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.55
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.5
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.39
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.23
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.17
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.01
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.98
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.86
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.76
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.73
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.67
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.19
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.81
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.65
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	95.13
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	94.91
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	84.32
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	83.19
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	81.78
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	80.68

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=4.7e-28  Score=255.74  Aligned_cols=38  Identities=18%  Similarity=0.476  Sum_probs=29.5

Q ss_pred             CCCcCCCCChHHHHHHhcCCC-hhHHHhhhcccccchhh
Q 011021           16 AMDRISELPTFIIHHLMSYLS-AKEVARTSVLSKKWNQL   53 (495)
Q Consensus        16 ~~d~is~LPd~vL~~Ils~L~-~~d~~rts~lSkrWr~l   53 (495)
                      +.|+++.|||||+.+||+||| .+|+++++.|||||+++
T Consensus         2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            468999999999999999999 99999999999999987

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=1.1e-26  Score=245.14  Aligned_cols=40  Identities=18%  Similarity=0.446  Sum_probs=32.3

Q ss_pred             CCCcCC----CCChHHHHHHhcCC-ChhHHHhhhcccccchhhhc
Q 011021           16 AMDRIS----ELPTFIIHHLMSYL-SAKEVARTSVLSKKWNQLYV   55 (495)
Q Consensus        16 ~~d~is----~LPd~vL~~Ils~L-~~~d~~rts~lSkrWr~lw~   55 (495)
                      +.|+++    +||||++.+||+|| +.+|++++++|||||++++.
T Consensus         5 ~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~   49 (592)
T 3ogk_B            5 DIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDS   49 (592)
T ss_dssp             -------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHH
T ss_pred             hhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhh
Confidence            345555    89999999999999 89999999999999999854

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=3e-22  Score=195.89  Aligned_cols=255  Identities=20%  Similarity=0.242  Sum_probs=130.5

Q ss_pred             CCCcCCCCChHHHHHHhcCCChhHHHhhhcccccchhhhcc---CceEEEecCccCCCCCCCcccccccccccchhhhhH
Q 011021           16 AMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVS---FPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETV   92 (495)
Q Consensus        16 ~~d~is~LPd~vL~~Ils~L~~~d~~rts~lSkrWr~lw~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (495)
                      +...+++||||++.+||+||+.+|+++++.|||||+++...   +..+++....+.                        
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~------------------------   60 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH------------------------   60 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCC------------------------
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCC------------------------
Confidence            35568999999999999999999999999999999998532   122232211110                        


Q ss_pred             HHHHHHHHHHHhhhccCCcccceEEEEEeccCCCCChhHHHHHHHHHHHcCceEeEEEeecCCCcccccCcccccCCcce
Q 011021           93 KKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVT  172 (495)
Q Consensus        93 ~~f~~~v~~~L~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~wi~~a~~~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~  172 (495)
                                                              +..+.....++++.++  +...  .....+..++.+++|+
T Consensus        61 ----------------------------------------~~~~~~~~~~~l~~L~--l~~n--~l~~~~~~~~~~~~L~   96 (336)
T 2ast_B           61 ----------------------------------------PDVTGRLLSQGVIAFR--CPRS--FMDQPLAEHFSPFRVQ   96 (336)
T ss_dssp             ----------------------------------------HHHHHHHHHTTCSEEE--CTTC--EECSCCCSCCCCBCCC
T ss_pred             ----------------------------------------HHHHHhhhhccceEEE--cCCc--cccccchhhccCCCCC
Confidence                                                    0111222223344444  2111  1111222244455666


Q ss_pred             EEEEeccccCCC--C-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce----eecCCCCccEEEe
Q 011021          173 NLRLVWCRLEQP--F-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL----CVSKASKLKIMEI  245 (495)
Q Consensus       173 ~L~L~~c~l~~~--~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~----~i~~l~~L~~L~i  245 (495)
                      +|++++|.+...  + ....+++|++|+|+++.+++..... +..+++|++|++++|..++..    .+.++++|++|++
T Consensus        97 ~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l  175 (336)
T 2ast_B           97 HMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL  175 (336)
T ss_dssp             EEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEEC
T ss_pred             EEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcC
Confidence            666666554321  1 3345566666666666554433332 344666666666666433321    1224556666666


Q ss_pred             ccc-c-c--cceEEEEeCC-cceEEEEeecC--CC-CceeEEeecCCCccEEEeeccc-cChHHHHHHhhcCCCCcEEEe
Q 011021          246 RSF-S-E--EIEIVEISVP-SLQQLTLLFYG--AR-RPRVVEVARSPHLKKLDLVSVY-FADNEFNHLISKFPSLEDLFV  316 (495)
Q Consensus       246 ~~c-~-~--~l~~~~~~~p-~L~~L~l~~~~--~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~L  316 (495)
                      .+| . .  .+......+| +|++|+++++.  .. ...+..++.+++|+.|+++++. +++..+.. +..+++|+.|++
T Consensus       176 ~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-l~~l~~L~~L~l  254 (336)
T 2ast_B          176 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQLNYLQHLSL  254 (336)
T ss_dssp             CCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-GGGCTTCCEEEC
T ss_pred             CCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH-HhCCCCCCEeeC
Confidence            655 2 1  0111122455 66666665331  11 1122233456666666666665 44433332 345566666666


Q ss_pred             cCCCCCccc----cccccccceEEeccC
Q 011021          317 TRCCLPGKI----KISSNQLKNLLFRSC  340 (495)
Q Consensus       317 ~~~~~~~~i----~~~~~~L~~L~l~~c  340 (495)
                      ++|..+...    ...+++|+.|++.+|
T Consensus       255 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          255 SRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            666433221    123556666666665

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.72  E-value=1.3e-17  Score=163.69  Aligned_cols=294  Identities=12%  Similarity=0.046  Sum_probs=200.7

Q ss_pred             HcCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccE
Q 011021          141 ENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED  220 (495)
Q Consensus       141 ~~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  220 (495)
                      .+++++++  +..+.  ...+| .+..+++|++|++++|.+...+.+.++++|++|+++++.+++  ++ .+.++++|++
T Consensus        43 l~~L~~L~--l~~~~--i~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~--~~-~~~~l~~L~~  114 (347)
T 4fmz_A           43 LESITKLV--VAGEK--VASIQ-GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD--IS-ALQNLTNLRE  114 (347)
T ss_dssp             HTTCSEEE--CCSSC--CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--CG-GGTTCTTCSE
T ss_pred             cccccEEE--EeCCc--cccch-hhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC--ch-HHcCCCcCCE
Confidence            36788888  54322  23344 366789999999999987765557789999999999998843  22 2678999999


Q ss_pred             EEEEecCCCcceeecCCCCccEEEeccccccceEE--EEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccCh
Q 011021          221 LCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIV--EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFAD  298 (495)
Q Consensus       221 L~L~~c~~l~~~~i~~l~~L~~L~i~~c~~~l~~~--~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  298 (495)
                      |++++|.......+..+++|+.|++.+|. ....+  ...+++|++|+++.+......  .++.+++|+.|+++++.+.+
T Consensus       115 L~l~~n~i~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~  191 (347)
T 4fmz_A          115 LYLNEDNISDISPLANLTKMYSLNLGANH-NLSDLSPLSNMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQIED  191 (347)
T ss_dssp             EECTTSCCCCCGGGTTCTTCCEEECTTCT-TCCCCGGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECTTSCCCC
T ss_pred             EECcCCcccCchhhccCCceeEEECCCCC-CcccccchhhCCCCcEEEecCCCcCCch--hhccCCCCCEEEccCCcccc
Confidence            99998875443346678999999999885 22111  125788999999855443222  26688999999999888765


Q ss_pred             HHHHHHhhcCCCCcEEEecCCCCCccc-cccccccceEEeccCCCccEEe--ccCCccceeeecccccc--eEeecCCCC
Q 011021          299 NEFNHLISKFPSLEDLFVTRCCLPGKI-KISSNQLKNLLFRSCKYLKVID--VDAPNLLLFTYEFNPIP--IISINVPCP  373 (495)
Q Consensus       299 ~~~~~l~~~~~~L~~L~L~~~~~~~~i-~~~~~~L~~L~l~~c~~l~~l~--~~~p~L~~l~~~~~~~~--~~~~~~~~L  373 (495)
                      ...   +..+++|+.|++.+|...... ...+++|+.|.+.+|.- ..+.  ..+++|++++++++.+.  ..+..+++|
T Consensus       192 ~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L  267 (347)
T 4fmz_A          192 ISP---LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKI-TDLSPLANLSQLTWLEIGTNQISDINAVKDLTKL  267 (347)
T ss_dssp             CGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTC
T ss_pred             ccc---ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCcc-CCCcchhcCCCCCEEECCCCccCCChhHhcCCCc
Confidence            222   567889999999887432221 23467888888887753 2221  34788888888887754  234567889


Q ss_pred             ceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCCCccHHHHHHHH
Q 011021          374 WKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDCV  453 (495)
Q Consensus       374 ~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l  453 (495)
                      +.++++.+..      ..+ ..+..+++|+.|+++.+.... ..++.+..+     ++|+.|++++|+-....+     +
T Consensus       268 ~~L~l~~n~l------~~~-~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l-----~~L~~L~L~~n~l~~~~~-----~  329 (347)
T 4fmz_A          268 KMLNVGSNQI------SDI-SVLNNLSQLNSLFLNNNQLGN-EDMEVIGGL-----TNLTTLFLSQNHITDIRP-----L  329 (347)
T ss_dssp             CEEECCSSCC------CCC-GGGGGCTTCSEEECCSSCCCG-GGHHHHHTC-----TTCSEEECCSSSCCCCGG-----G
T ss_pred             CEEEccCCcc------CCC-hhhcCCCCCCEEECcCCcCCC-cChhHhhcc-----ccCCEEEccCCccccccC-----h
Confidence            9998864432      223 346788899977664433222 245667666     889999999887444332     4


Q ss_pred             hhhccCCeeEEeec
Q 011021          454 FWICHPRTLRVNVM  467 (495)
Q Consensus       454 ~~~~~l~~l~i~~~  467 (495)
                      ..+++|++|.+.++
T Consensus       330 ~~l~~L~~L~l~~N  343 (347)
T 4fmz_A          330 ASLSKMDSADFANQ  343 (347)
T ss_dssp             GGCTTCSEESSSCC
T ss_pred             hhhhccceeehhhh
Confidence            45678888888766

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.71  E-value=7.1e-18  Score=182.96  Aligned_cols=288  Identities=16%  Similarity=0.073  Sum_probs=178.7

Q ss_pred             ccCCcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEE
Q 011021          166 FSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME  244 (495)
Q Consensus       166 ~~~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~  244 (495)
                      ..+++|++|++++|.+.... ..+.+++|++|+++++.+++. +...+.++++|++|++++|...+......+++|++|+
T Consensus       197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~  275 (768)
T 3rgz_A          197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS  275 (768)
T ss_dssp             TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred             ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence            56788888888888775533 567889999999999888533 3345778999999999998754444444678899999


Q ss_pred             ecccc-c-cceEEEE-eCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCC
Q 011021          245 IRSFS-E-EIEIVEI-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCL  321 (495)
Q Consensus       245 i~~c~-~-~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~  321 (495)
                      +.+|. . .+..... .+++|++|+++.+......+..++.+++|++|+++++.+++......+..+++|+.|++++|..
T Consensus       276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l  355 (768)
T 3rgz_A          276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF  355 (768)
T ss_dssp             CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred             CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence            98875 1 1111111 2488999998855443334455678888999999888876544444456788888888888743


Q ss_pred             Ccccccc---cc-ccceEEeccCCC---------------cc-----------EEe---ccCCccceeeeccccc----c
Q 011021          322 PGKIKIS---SN-QLKNLLFRSCKY---------------LK-----------VID---VDAPNLLLFTYEFNPI----P  364 (495)
Q Consensus       322 ~~~i~~~---~~-~L~~L~l~~c~~---------------l~-----------~l~---~~~p~L~~l~~~~~~~----~  364 (495)
                      .+.++..   .+ +|+.|+++.+.-               ++           .+.   -.+++|+.++++++.+    |
T Consensus       356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  435 (768)
T 3rgz_A          356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP  435 (768)
T ss_dssp             EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred             CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc
Confidence            3222221   22 566666555421               11           111   1244555555555442    2


Q ss_pred             eEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCCCc
Q 011021          365 IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLS  444 (495)
Q Consensus       365 ~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~  444 (495)
                      ..+.++++|+.|+++.+..     ...++..+.++++|+.|+++.+.... ..|..+..+     ++|+.|++++|.-.+
T Consensus       436 ~~l~~l~~L~~L~L~~n~l-----~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l-----~~L~~L~L~~N~l~~  504 (768)
T 3rgz_A          436 SSLGSLSKLRDLKLWLNML-----EGEIPQELMYVKTLETLILDFNDLTG-EIPSGLSNC-----TNLNWISLSNNRLTG  504 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCC-----CSCCCGGGGGCTTCCEEECCSSCCCS-CCCGGGGGC-----TTCCEEECCSSCCCS
T ss_pred             HHHhcCCCCCEEECCCCcc-----cCcCCHHHcCCCCceEEEecCCcccC-cCCHHHhcC-----CCCCEEEccCCccCC
Confidence            2344556666666643332     22345666777777766553322221 236667666     778888888877554


Q ss_pred             cHHHHHHHHhhhccCCeeEEeecc
Q 011021          445 DYETLLDCVFWICHPRTLRVNVMF  468 (495)
Q Consensus       445 ~~~~l~~~l~~~~~l~~l~i~~~~  468 (495)
                      ..|.   .+-.+++|++|.+.++.
T Consensus       505 ~~p~---~~~~l~~L~~L~L~~N~  525 (768)
T 3rgz_A          505 EIPK---WIGRLENLAILKLSNNS  525 (768)
T ss_dssp             CCCG---GGGGCTTCCEEECCSSC
T ss_pred             cCCh---HHhcCCCCCEEECCCCc
Confidence            4443   33346778888887773

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.69  E-value=4.9e-18  Score=184.20  Aligned_cols=299  Identities=16%  Similarity=0.026  Sum_probs=180.8

Q ss_pred             cccccCcccccCCcceEEEEeccccCC--CC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce
Q 011021          157 TVYTLPQAIFSANSVTNLRLVWCRLEQ--PF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL  232 (495)
Q Consensus       157 ~~~~lp~~l~~~~~L~~L~L~~c~l~~--~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~  232 (495)
                      ....+|..+..+++|++|+|++|.+..  +.  ..+.+++|++|+|+++.+.......+..++++|++|++++|...+..
T Consensus        88 ~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  167 (768)
T 3rgz_A           88 HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN  167 (768)
T ss_dssp             CEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEET
T ss_pred             CcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcC
Confidence            344566778888889999998887652  22  46778888899888887732222222357888888888888643221


Q ss_pred             e-----ecCCCCccEEEecccc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhh
Q 011021          233 C-----VSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLIS  306 (495)
Q Consensus       233 ~-----i~~l~~L~~L~i~~c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  306 (495)
                      .     +.++++|++|++.+|. .+.... ..+++|++|+++++......+. ++.+++|++|+++++.+++.... .+.
T Consensus       168 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~-~l~  244 (768)
T 3rgz_A          168 VVGWVLSDGCGELKHLAISGNKISGDVDV-SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR-AIS  244 (768)
T ss_dssp             HHHHHHTTCCTTCCEEECCSSEEESCCBC-TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH-HTT
T ss_pred             ChhhhhhccCCCCCEEECCCCcccccCCc-ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH-HHh
Confidence            1     4567888888888875 111111 3578888888886555443443 77888889999888888765443 356


Q ss_pred             cCCCCcEEEecCCCCCccccc-cccccceEEeccCCCccEEe---cc-CCccceeeeccccc----ceEeecCCCCceEE
Q 011021          307 KFPSLEDLFVTRCCLPGKIKI-SSNQLKNLLFRSCKYLKVID---VD-APNLLLFTYEFNPI----PIISINVPCPWKVS  377 (495)
Q Consensus       307 ~~~~L~~L~L~~~~~~~~i~~-~~~~L~~L~l~~c~~l~~l~---~~-~p~L~~l~~~~~~~----~~~~~~~~~L~~l~  377 (495)
                      .+++|+.|++++|...+.++. .+++|+.|++.++.-...+.   .. +++|++++++++.+    |..+.++++|+.|+
T Consensus       245 ~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  324 (768)
T 3rgz_A          245 TCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA  324 (768)
T ss_dssp             TCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEE
T ss_pred             cCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEE
Confidence            788888888888854433322 45678888887764221221   11 47777777777653    23455677777777


Q ss_pred             EEEecccchhhhcchH-HHhccCCccceEEEEEEecceecccccccccC----------------------CCCCCccce
Q 011021          378 FVCKGVLNTHWYLKLK-KFLGVSKQIESLKLSLYSTKVLYNLDELSECS----------------------PSLPLQVEN  434 (495)
Q Consensus       378 i~~~~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~----------------------~~~p~~L~~  434 (495)
                      ++.+..     ...++ ..+.++++|+.|+++.+.... ..|+.+....                      ..++++|+.
T Consensus       325 L~~n~l-----~~~ip~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~  398 (768)
T 3rgz_A          325 LSSNNF-----SGELPMDTLLKMRGLKVLDLSFNEFSG-ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE  398 (768)
T ss_dssp             CCSSEE-----EEECCHHHHTTCTTCCEEECCSSEEEE-CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCE
T ss_pred             CCCCcc-----cCcCCHHHHhcCCCCCEEeCcCCccCc-cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccE
Confidence            753332     11233 236667777766553222210 1244443330                      001245666


Q ss_pred             eEEEecCCCccHHHHHHHHhhhccCCeeEEeec
Q 011021          435 LELHTNVPLSDYETLLDCVFWICHPRTLRVNVM  467 (495)
Q Consensus       435 L~l~~~~~~~~~~~l~~~l~~~~~l~~l~i~~~  467 (495)
                      |++.+|.-.+..+   ..+-.+++|++|.+..+
T Consensus       399 L~L~~n~l~~~~p---~~l~~l~~L~~L~Ls~N  428 (768)
T 3rgz_A          399 LYLQNNGFTGKIP---PTLSNCSELVSLHLSFN  428 (768)
T ss_dssp             EECCSSEEEEECC---GGGGGCTTCCEEECCSS
T ss_pred             EECCCCccccccC---HHHhcCCCCCEEECcCC
Confidence            6666554332222   23344667777777766

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.68  E-value=5.3e-17  Score=159.23  Aligned_cols=272  Identities=13%  Similarity=0.108  Sum_probs=193.6

Q ss_pred             cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEE
Q 011021          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L  221 (495)
                      +++++|+  +..+  ....+|. +..+++|++|++++|.+...+.+..+++|++|+++++.+.+-.  . +..++.|++|
T Consensus        66 ~~L~~L~--l~~n--~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~--~-~~~l~~L~~L  137 (347)
T 4fmz_A           66 TNLEYLN--LNGN--QITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDIS--P-LANLTKMYSL  137 (347)
T ss_dssp             TTCCEEE--CCSS--CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCG--G-GTTCTTCCEE
T ss_pred             CCccEEE--ccCC--ccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCch--h-hccCCceeEE
Confidence            5788888  5433  2234444 6778999999999998876656788999999999999884321  1 6789999999


Q ss_pred             EEEecCCCcce-eecCCCCccEEEecccc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChH
Q 011021          222 CFSNCWGLKHL-CVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN  299 (495)
Q Consensus       222 ~L~~c~~l~~~-~i~~l~~L~~L~i~~c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  299 (495)
                      ++.+|...... .+..+++|+.|++.+|. ..... ...+++|+.|+++++......  .+..+++|+.|+++++.+++.
T Consensus       138 ~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~  214 (347)
T 4fmz_A          138 NLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDIS--PLASLTSLHYFTAYVNQITDI  214 (347)
T ss_dssp             ECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCC
T ss_pred             ECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccc--cccCCCccceeecccCCCCCC
Confidence            99999765543 34578999999999886 12111 126789999999855443222  266889999999999887763


Q ss_pred             HHHHHhhcCCCCcEEEecCCCCCccc-cccccccceEEeccCCCccEEe--ccCCccceeeecccccc--eEeecCCCCc
Q 011021          300 EFNHLISKFPSLEDLFVTRCCLPGKI-KISSNQLKNLLFRSCKYLKVID--VDAPNLLLFTYEFNPIP--IISINVPCPW  374 (495)
Q Consensus       300 ~~~~l~~~~~~L~~L~L~~~~~~~~i-~~~~~~L~~L~l~~c~~l~~l~--~~~p~L~~l~~~~~~~~--~~~~~~~~L~  374 (495)
                      ..   +..+++|+.|++++|...... ...+++|+.|+++++. +..+.  ..+++|+.++++++.+.  ..+..+++|+
T Consensus       215 ~~---~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~  290 (347)
T 4fmz_A          215 TP---VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLN  290 (347)
T ss_dssp             GG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred             ch---hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCc-cCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCC
Confidence            22   567899999999988432211 2356789999998874 33332  23788999999988755  3355789999


Q ss_pred             eEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecC
Q 011021          375 KVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNV  441 (495)
Q Consensus       375 ~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~  441 (495)
                      .|+++.+..     ....+..++++++|+.|+++.+....+  +. +..+     ++|+.|++++|+
T Consensus       291 ~L~L~~n~l-----~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~-~~~l-----~~L~~L~l~~N~  344 (347)
T 4fmz_A          291 SLFLNNNQL-----GNEDMEVIGGLTNLTTLFLSQNHITDI--RP-LASL-----SKMDSADFANQV  344 (347)
T ss_dssp             EEECCSSCC-----CGGGHHHHHTCTTCSEEECCSSSCCCC--GG-GGGC-----TTCSEESSSCC-
T ss_pred             EEECcCCcC-----CCcChhHhhccccCCEEEccCCccccc--cC-hhhh-----hccceeehhhhc
Confidence            999975544     233567789999999777754443333  22 5555     889999998876

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.66  E-value=5.9e-17  Score=166.08  Aligned_cols=262  Identities=16%  Similarity=0.075  Sum_probs=112.6

Q ss_pred             ccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcc--eeecCCCC
Q 011021          164 AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASK  239 (495)
Q Consensus       164 ~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~--~~i~~l~~  239 (495)
                      .+..+++|++|+|++|.+....  .+.++++|++|+|+++.++.- ....+.++++|++|++++|.....  ..+.++++
T Consensus        51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  129 (477)
T 2id5_A           51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN  129 (477)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence            3344555555555555443221  344555555555555544210 011234455555555555542211  11224455


Q ss_pred             ccEEEeccccccceEEE----EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEE
Q 011021          240 LKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLF  315 (495)
Q Consensus       240 L~~L~i~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~  315 (495)
                      |+.|++.++.  +..+.    ..+++|+.|+++.+.........+..+++|+.|++.++.+.... ...+..+++|+.|+
T Consensus       130 L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~  206 (477)
T 2id5_A          130 LKSLEVGDND--LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR-DYSFKRLYRLKVLE  206 (477)
T ss_dssp             CCEEEECCTT--CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC-TTCSCSCTTCCEEE
T ss_pred             CCEEECCCCc--cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC-hhhcccCcccceee
Confidence            5555555442  11111    12345555555533222111112334555555555554443311 11123445555555


Q ss_pred             ecCCCCCccccc---cccccceEEeccCCCccEEe----ccCCccceeeecccccc----eEeecCCCCceEEEEEeccc
Q 011021          316 VTRCCLPGKIKI---SSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP----IISINVPCPWKVSFVCKGVL  384 (495)
Q Consensus       316 L~~~~~~~~i~~---~~~~L~~L~l~~c~~l~~l~----~~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~i~~~~~~  384 (495)
                      +.+|...+.++.   ...+|+.|++.++. +..+.    -.+++|+.++++++.+.    ..+.++++|++|+++.+.. 
T Consensus       207 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-  284 (477)
T 2id5_A          207 ISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL-  284 (477)
T ss_dssp             EECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCC-
T ss_pred             CCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCcc-
Confidence            555544433322   12245555555442 22221    12455555555555432    1233455566666543222 


Q ss_pred             chhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecC
Q 011021          385 NTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNV  441 (495)
Q Consensus       385 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~  441 (495)
                          ....+..+.++++|+.|+++.+....+ .+..+..+     ++|+.|++++|+
T Consensus       285 ----~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l-----~~L~~L~l~~N~  331 (477)
T 2id5_A          285 ----AVVEPYAFRGLNYLRVLNVSGNQLTTL-EESVFHSV-----GNLETLILDSNP  331 (477)
T ss_dssp             ----SEECTTTBTTCTTCCEEECCSSCCSCC-CGGGBSCG-----GGCCEEECCSSC
T ss_pred             ----ceECHHHhcCcccCCEEECCCCcCcee-CHhHcCCC-----cccCEEEccCCC
Confidence                111234455566666554432222222 22234444     566666666665

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.66  E-value=7e-16  Score=157.59  Aligned_cols=291  Identities=12%  Similarity=0.084  Sum_probs=188.9

Q ss_pred             cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEE
Q 011021          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L  221 (495)
                      .++++|+  +..+  ....++. +..+++|++|++++|.+...+....+++|++|+++++.+.+-  .. +..++.|++|
T Consensus        90 ~~L~~L~--l~~n--~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L  161 (466)
T 1o6v_A           90 TKLVDIL--MNNN--QIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI--SA-LSGLTSLQQL  161 (466)
T ss_dssp             TTCCEEE--CCSS--CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCC--GG-GTTCTTCSEE
T ss_pred             ccCCEEE--CCCC--ccccChh-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCC--hh-hccCCcccEe
Confidence            5677777  5432  2233343 667888888888888776655567888888888888888431  12 6778888888


Q ss_pred             EEEecCCCcceeecCCCCccEEEecccc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHH
Q 011021          222 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE  300 (495)
Q Consensus       222 ~L~~c~~l~~~~i~~l~~L~~L~i~~c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  300 (495)
                      .+..+. .....+.++++|+.|++++|. ..+.. ...+++|++|+++.+......+  ++.+++|+.|+++++.+++. 
T Consensus       162 ~l~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-  236 (466)
T 1o6v_A          162 SFGNQV-TDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-  236 (466)
T ss_dssp             EEEESC-CCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-
T ss_pred             ecCCcc-cCchhhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-
Confidence            886432 222345677889999988875 22111 1256889999888554433222  56788899999988887662 


Q ss_pred             HHHHhhcCCCCcEEEecCCCCCccc-cccccccceEEeccCCCccEE-eccCCccceeeecccccc--eEeecCCCCceE
Q 011021          301 FNHLISKFPSLEDLFVTRCCLPGKI-KISSNQLKNLLFRSCKYLKVI-DVDAPNLLLFTYEFNPIP--IISINVPCPWKV  376 (495)
Q Consensus       301 ~~~l~~~~~~L~~L~L~~~~~~~~i-~~~~~~L~~L~l~~c~~l~~l-~~~~p~L~~l~~~~~~~~--~~~~~~~~L~~l  376 (495)
                        ..+..+++|+.|++++|...+.. ...+++|+.|.+.++.--... ...+++|+.++++++.+.  ..+..+++|+.|
T Consensus       237 --~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L  314 (466)
T 1o6v_A          237 --GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL  314 (466)
T ss_dssp             --GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEE
T ss_pred             --hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEE
Confidence              23567889999999887432222 224578888888776422111 124778888888887754  235578889999


Q ss_pred             EEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCCCccHHHHHHHHhhh
Q 011021          377 SFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWI  456 (495)
Q Consensus       377 ~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l~~~  456 (495)
                      +++.+...+      .+. ++.+++|+.|+++.+....+   ..+..+     ++|+.|++++|+-....+     +..+
T Consensus       315 ~L~~n~l~~------~~~-~~~l~~L~~L~l~~n~l~~~---~~l~~l-----~~L~~L~l~~n~l~~~~~-----~~~l  374 (466)
T 1o6v_A          315 TLYFNNISD------ISP-VSSLTKLQRLFFYNNKVSDV---SSLANL-----TNINWLSAGHNQISDLTP-----LANL  374 (466)
T ss_dssp             ECCSSCCSC------CGG-GGGCTTCCEEECCSSCCCCC---GGGTTC-----TTCCEEECCSSCCCBCGG-----GTTC
T ss_pred             ECcCCcCCC------chh-hccCccCCEeECCCCccCCc---hhhccC-----CCCCEEeCCCCccCccch-----hhcC
Confidence            886554322      222 67888888776643322222   345555     888899998887544333     4456


Q ss_pred             ccCCeeEEeec
Q 011021          457 CHPRTLRVNVM  467 (495)
Q Consensus       457 ~~l~~l~i~~~  467 (495)
                      ++|+.|.+.++
T Consensus       375 ~~L~~L~l~~n  385 (466)
T 1o6v_A          375 TRITQLGLNDQ  385 (466)
T ss_dssp             TTCCEEECCCE
T ss_pred             CCCCEEeccCC
Confidence            78888888776

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.65  E-value=5.3e-16  Score=158.50  Aligned_cols=293  Identities=12%  Similarity=0.068  Sum_probs=168.2

Q ss_pred             cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEE
Q 011021          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L  221 (495)
                      +++++|+  +..+.  ...+|. +..+++|++|++++|.+...+....+++|++|+++++.+++-.  . +.++++|++|
T Consensus        68 ~~L~~L~--Ls~n~--l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L  139 (466)
T 1o6v_A           68 NNLTQIN--FSNNQ--LTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID--P-LKNLTNLNRL  139 (466)
T ss_dssp             TTCCEEE--CCSSC--CCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCSEE
T ss_pred             cCCCEEE--CCCCc--cCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCCh--H-HcCCCCCCEE
Confidence            4566666  43221  222333 5556667777776666554434556667777777666663211  1 5566777777


Q ss_pred             EEEecCCCcceeecCCCCccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHH
Q 011021          222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEF  301 (495)
Q Consensus       222 ~L~~c~~l~~~~i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  301 (495)
                      ++++|.......+.++++|+.|.+.++...... ...+++|+.|+++.+....  ...+..+++|+.|+++++.+++...
T Consensus       140 ~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~~  216 (466)
T 1o6v_A          140 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP  216 (466)
T ss_dssp             EEEEEEECCCGGGTTCTTCSEEEEEESCCCCGG-GTTCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             ECCCCccCCChhhccCCcccEeecCCcccCchh-hccCCCCCEEECcCCcCCC--ChhhccCCCCCEEEecCCccccccc
Confidence            776664322223445666776666533211111 1145677777777443322  1224567777777777777655322


Q ss_pred             HHHhhcCCCCcEEEecCCCCCccc--cccccccceEEeccCCCccEEe-ccCCccceeeecccccc--eEeecCCCCceE
Q 011021          302 NHLISKFPSLEDLFVTRCCLPGKI--KISSNQLKNLLFRSCKYLKVID-VDAPNLLLFTYEFNPIP--IISINVPCPWKV  376 (495)
Q Consensus       302 ~~l~~~~~~L~~L~L~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~l~-~~~p~L~~l~~~~~~~~--~~~~~~~~L~~l  376 (495)
                         ...+++|+.|++++|.. ..+  ...+++|+.|++.+|.--.... -.+++|+.++++++.+.  ..+..+++|+.|
T Consensus       217 ---~~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L  292 (466)
T 1o6v_A          217 ---LGILTNLDELSLNGNQL-KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL  292 (466)
T ss_dssp             ---GGGCTTCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             ---ccccCCCCEEECCCCCc-ccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeE
Confidence               45577788888877632 222  1245677777777764221111 23677888888877644  224567788888


Q ss_pred             EEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCCCccHHHHHHHHhhh
Q 011021          377 SFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWI  456 (495)
Q Consensus       377 ~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l~~~  456 (495)
                      +++.+..      ..++. ++++++|+.|+++.+.....  +. +..+     ++|+.|++++|+-.. .    ..+-.+
T Consensus       293 ~L~~n~l------~~~~~-~~~l~~L~~L~L~~n~l~~~--~~-~~~l-----~~L~~L~l~~n~l~~-~----~~l~~l  352 (466)
T 1o6v_A          293 ELNENQL------EDISP-ISNLKNLTYLTLYFNNISDI--SP-VSSL-----TKLQRLFFYNNKVSD-V----SSLANL  352 (466)
T ss_dssp             ECCSSCC------SCCGG-GGGCTTCSEEECCSSCCSCC--GG-GGGC-----TTCCEEECCSSCCCC-C----GGGTTC
T ss_pred             EcCCCcc------cCchh-hcCCCCCCEEECcCCcCCCc--hh-hccC-----ccCCEeECCCCccCC-c----hhhccC
Confidence            8854432      22222 67888899777644433322  22 4455     889999998886333 2    244567


Q ss_pred             ccCCeeEEeeccc
Q 011021          457 CHPRTLRVNVMFE  469 (495)
Q Consensus       457 ~~l~~l~i~~~~~  469 (495)
                      ++|+.|.+.++.+
T Consensus       353 ~~L~~L~l~~n~l  365 (466)
T 1o6v_A          353 TNINWLSAGHNQI  365 (466)
T ss_dssp             TTCCEEECCSSCC
T ss_pred             CCCCEEeCCCCcc
Confidence            8899999988843

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.63  E-value=2.3e-16  Score=166.10  Aligned_cols=200  Identities=16%  Similarity=0.097  Sum_probs=116.8

Q ss_pred             CcccceEEEEEeccCCCCChhHHHHHHHHHHHcCceEeEEEeecCC-CcccccCcccccCCcceEEEEeccccCCCC---
Q 011021          110 KFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDE-NTVYTLPQAIFSANSVTNLRLVWCRLEQPF---  185 (495)
Q Consensus       110 ~~~l~~l~l~~~~~~~~~~~~~~~~wi~~a~~~~l~~L~l~l~~~~-~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~---  185 (495)
                      ...++.+.+....     ..+..-.|+......++++|+  +..+. .....++.....|++|++|+|++|.+....   
T Consensus       111 ~~~L~~L~L~~~~-----i~~~~~~~l~~~~~~~L~~L~--L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~  183 (592)
T 3ogk_B          111 LRQLKSVHFRRMI-----VSDLDLDRLAKARADDLETLK--LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW  183 (592)
T ss_dssp             CTTCCEEEEESCB-----CCHHHHHHHHHHHGGGCCEEE--EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH
T ss_pred             CCCCCeEEeeccE-----ecHHHHHHHHHhccccCcEEE--CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH
Confidence            3568888887431     222455666665556699999  54332 122234444457899999999999875432   


Q ss_pred             ---CccCCCCCcEEEeeeEeeC---hHHHHHHHhcCCCccEEEEEecCCCcc-eeecCCCCccEEEecccccc-----ce
Q 011021          186 ---DSIMLCSLKKLTLERVCLD---EQMVQKLASECPLLEDLCFSNCWGLKH-LCVSKASKLKIMEIRSFSEE-----IE  253 (495)
Q Consensus       186 ---~~~~l~~L~~L~L~~~~~~---~~~l~~l~~~~p~Le~L~L~~c~~l~~-~~i~~l~~L~~L~i~~c~~~-----l~  253 (495)
                         ....+++|++|+++++.++   ...+..++.+||+|++|++.+|...+. ..+.++++|+.|.+..+...     ..
T Consensus       184 l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~  263 (592)
T 3ogk_B          184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKY  263 (592)
T ss_dssp             HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred             HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHH
Confidence               2357899999999988874   677888889999999999999753221 11224577777777643200     00


Q ss_pred             EEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEec
Q 011021          254 IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVT  317 (495)
Q Consensus       254 ~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~  317 (495)
                      .....+++|+.+.++... ....+..+..+++|++|+++++.+++..+..++..+++|+.|++.
T Consensus       264 ~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          264 MNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             SCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             HHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            111134455555554211 112222333455555555555555544444444555555555554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.63  E-value=4.3e-16  Score=158.59  Aligned_cols=310  Identities=13%  Similarity=0.077  Sum_probs=190.4

Q ss_pred             cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCC-C-CccCCCCCcEEEeeeEeeChHHHH-HHHhcCCCc
Q 011021          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQP-F-DSIMLCSLKKLTLERVCLDEQMVQ-KLASECPLL  218 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~-~-~~~~l~~L~~L~L~~~~~~~~~l~-~l~~~~p~L  218 (495)
                      .+++.|+  +..+.....--|..+..+++|++|+|++|.+... + .+.++++|++|+|+++.+++.... ..+..+++|
T Consensus        54 ~~L~~L~--L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L  131 (455)
T 3v47_A           54 QDLQFLK--VEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL  131 (455)
T ss_dssp             TTCCEEE--CCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTC
T ss_pred             ccccEEE--CcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccC
Confidence            4677777  5432221122244556678888888888876543 2 567788888888888887543332 236678888


Q ss_pred             cEEEEEecCCCccee---ecCCCCccEEEecccc-ccceEEE---EeCCcceEEEEeecCCCCceeE--------EeecC
Q 011021          219 EDLCFSNCWGLKHLC---VSKASKLKIMEIRSFS-EEIEIVE---ISVPSLQQLTLLFYGARRPRVV--------EVARS  283 (495)
Q Consensus       219 e~L~L~~c~~l~~~~---i~~l~~L~~L~i~~c~-~~l~~~~---~~~p~L~~L~l~~~~~~~~~~~--------~~~~~  283 (495)
                      ++|++++|.......   +.++++|+.|++++|. .......   ...++|+.++++.+........        .+..+
T Consensus       132 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~  211 (455)
T 3v47_A          132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN  211 (455)
T ss_dssp             CEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT
T ss_pred             CEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccccc
Confidence            888888886433222   4567888888888875 1111100   1225677777774333211111        12245


Q ss_pred             CCccEEEeeccccChHHHHHHhh--cCCCCcEEEecCCCCCccc---------------cccccccceEEeccCCCccEE
Q 011021          284 PHLKKLDLVSVYFADNEFNHLIS--KFPSLEDLFVTRCCLPGKI---------------KISSNQLKNLLFRSCKYLKVI  346 (495)
Q Consensus       284 ~~L~~L~l~~~~~~~~~~~~l~~--~~~~L~~L~L~~~~~~~~i---------------~~~~~~L~~L~l~~c~~l~~l  346 (495)
                      ++|+.|+++++.+++.....+..  ..++|+.|.+.+|......               ....++|+.|++.++.-....
T Consensus       212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  291 (455)
T 3v47_A          212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL  291 (455)
T ss_dssp             CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred             ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc
Confidence            78999999999988765554433  2478889988877332210               011357888888776533222


Q ss_pred             e---ccCCccceeeecccccc----eEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccc
Q 011021          347 D---VDAPNLLLFTYEFNPIP----IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLD  419 (495)
Q Consensus       347 ~---~~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~  419 (495)
                      .   -.+++|+.++++++.+.    ..+.++++|+.|+++.+..     ....+..++++++|+.|+++.+.... ..|+
T Consensus       292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-----~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~  365 (455)
T 3v47_A          292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-----GSIDSRMFENLDKLEVLDLSYNHIRA-LGDQ  365 (455)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-----CEECGGGGTTCTTCCEEECCSSCCCE-ECTT
T ss_pred             hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc-----CCcChhHhcCcccCCEEECCCCcccc-cChh
Confidence            1   23678888888887753    2455678888888864433     12235677888888877664433322 2466


Q ss_pred             cccccCCCCCCccceeEEEecCCCccHHHHHHHHhhhccCCeeEEeec
Q 011021          420 ELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVM  467 (495)
Q Consensus       420 ~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l~~~~~l~~l~i~~~  467 (495)
                      .+..+     ++|++|++++|.-....++   .+-.+++|++|.+.++
T Consensus       366 ~~~~l-----~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N  405 (455)
T 3v47_A          366 SFLGL-----PNLKELALDTNQLKSVPDG---IFDRLTSLQKIWLHTN  405 (455)
T ss_dssp             TTTTC-----TTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSS
T ss_pred             hcccc-----ccccEEECCCCccccCCHh---HhccCCcccEEEccCC
Confidence            67666     8888998888763332221   2234678888888765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.63  E-value=2.5e-16  Score=167.08  Aligned_cols=284  Identities=10%  Similarity=0.063  Sum_probs=163.9

Q ss_pred             cCcccc--cCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEe-eChHHHHHHHhc------CCCccEEEEEecCCC
Q 011021          161 LPQAIF--SANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVC-LDEQMVQKLASE------CPLLEDLCFSNCWGL  229 (495)
Q Consensus       161 lp~~l~--~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~------~p~Le~L~L~~c~~l  229 (495)
                      +|..+.  .+++|++|++++|.+....  .+.++++|++|++++|. +++..++.-+..      +++|++|++.+|...
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence            899998  9999999999999865432  67889999999999998 765234443443      489999999998754


Q ss_pred             cce----eecCCCCccEEEecccc-c-cceEEEEeCCcceEEEEeecCCCCceeEEeecCCC-ccEEEeeccccChHHHH
Q 011021          230 KHL----CVSKASKLKIMEIRSFS-E-EIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPH-LKKLDLVSVYFADNEFN  302 (495)
Q Consensus       230 ~~~----~i~~l~~L~~L~i~~c~-~-~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~  302 (495)
                       .+    .+.++++|+.|++.+|. . .+. .....++|+.|+++++... ..+..++.+++ |+.|+++++.++.  +.
T Consensus       319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~--lp  393 (636)
T 4eco_A          319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY--IP  393 (636)
T ss_dssp             -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS--CC
T ss_pred             -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc--cc
Confidence             33    24577889999998875 1 122 1124456777776633221 22223445555 6666666665542  11


Q ss_pred             HHhhc--CCCCcEEEecCCCCCc------------------------------cccc----cccccceEEeccCCCccEE
Q 011021          303 HLISK--FPSLEDLFVTRCCLPG------------------------------KIKI----SSNQLKNLLFRSCKYLKVI  346 (495)
Q Consensus       303 ~l~~~--~~~L~~L~L~~~~~~~------------------------------~i~~----~~~~L~~L~l~~c~~l~~l  346 (495)
                      ..+..  +++|+.|++++|...+                              .++.    .+++|+.|.++++. +..+
T Consensus       394 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i  472 (636)
T 4eco_A          394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM-LTEI  472 (636)
T ss_dssp             SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC-CSBC
T ss_pred             hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC-CCCc
Confidence            11111  2245555555442222                              2211    13445555555443 2222


Q ss_pred             ecc-----------CCccceeeecccccc---eEee--cCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEE-
Q 011021          347 DVD-----------APNLLLFTYEFNPIP---IISI--NVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSL-  409 (495)
Q Consensus       347 ~~~-----------~p~L~~l~~~~~~~~---~~~~--~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~-  409 (495)
                      ...           +++|+.++++++.+.   ..+.  .+++|+.|+++.+.      +..+|..+.++++|+.|+++. 
T Consensus       473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~------l~~ip~~~~~l~~L~~L~Ls~N  546 (636)
T 4eco_A          473 PKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS------FSKFPTQPLNSSTLKGFGIRNQ  546 (636)
T ss_dssp             CSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSC------CSSCCCGGGGCSSCCEEECCSC
T ss_pred             CHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCC------CCCcChhhhcCCCCCEEECCCC
Confidence            211           116666776666532   2222  56777777774333      223566667777777666632 


Q ss_pred             ---Eeccee-cccccccccCCCCCCccceeEEEecCCCccHHHHHHHHhhhccCCeeEEeec
Q 011021          410 ---YSTKVL-YNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVM  467 (495)
Q Consensus       410 ---~~~~~~-~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l~~~~~l~~l~i~~~  467 (495)
                         ..+... ..|+.+..+     ++|+.|++++|.- +.+|.   .+  .++|++|.+.++
T Consensus       547 ~~ls~N~l~~~~p~~l~~l-----~~L~~L~Ls~N~l-~~ip~---~~--~~~L~~L~Ls~N  597 (636)
T 4eco_A          547 RDAQGNRTLREWPEGITLC-----PSLTQLQIGSNDI-RKVNE---KI--TPNISVLDIKDN  597 (636)
T ss_dssp             BCTTCCBCCCCCCTTGGGC-----SSCCEEECCSSCC-CBCCS---CC--CTTCCEEECCSC
T ss_pred             cccccCcccccChHHHhcC-----CCCCEEECCCCcC-CccCH---hH--hCcCCEEECcCC
Confidence               112222 346667666     7788888877764 33332   11  157788887776

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.62  E-value=3.8e-15  Score=144.75  Aligned_cols=230  Identities=18%  Similarity=0.195  Sum_probs=151.2

Q ss_pred             HHHHHHcCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhc
Q 011021          136 IRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASE  214 (495)
Q Consensus       136 i~~a~~~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~  214 (495)
                      +..+...+++.|+  +....  ...+|..++.+++|++|+|++|.+...+ .+..+++|++|+|++|.++  .++..+.+
T Consensus        75 l~~~~~~~l~~L~--L~~n~--l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~  148 (328)
T 4fcg_A           75 LEDATQPGRVALE--LRSVP--LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIAS  148 (328)
T ss_dssp             HHHHTSTTCCEEE--EESSC--CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGG
T ss_pred             HhcccccceeEEE--ccCCC--chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhc
Confidence            3334446888888  54332  3478888999999999999999887544 5788999999999999885  23444778


Q ss_pred             CCCccEEEEEecCCCcceeecCCCCccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeecc
Q 011021          215 CPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSV  294 (495)
Q Consensus       215 ~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  294 (495)
                      +++|++|++++|...+.++.    .+....+.+       ..-.+++|+.|+++++... ..+..++.+++|++|+++++
T Consensus       149 l~~L~~L~L~~n~~~~~~p~----~~~~~~~~~-------~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N  216 (328)
T 4fcg_A          149 LNRLRELSIRACPELTELPE----PLASTDASG-------EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS  216 (328)
T ss_dssp             CTTCCEEEEEEETTCCCCCS----CSEEEC-CC-------CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESS
T ss_pred             CcCCCEEECCCCCCccccCh----hHhhccchh-------hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCC
Confidence            99999999999876554322    111111111       0124667777777755543 34445677888999999888


Q ss_pred             ccChHHHHHHhhcCCCCcEEEecCCCCCccccc---cccccceEEeccCCCccEEeccCCccceeeecccccceEeecCC
Q 011021          295 YFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI---SSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVP  371 (495)
Q Consensus       295 ~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~~---~~~~L~~L~l~~c~~l~~l~~~~p~L~~l~~~~~~~~~~~~~~~  371 (495)
                      .++.  +...+..+++|+.|++++|...+.++.   .+++|+.|++.+|..+..+.                 ..+.+++
T Consensus       217 ~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p-----------------~~~~~l~  277 (328)
T 4fcg_A          217 PLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP-----------------LDIHRLT  277 (328)
T ss_dssp             CCCC--CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC-----------------TTGGGCT
T ss_pred             CCCc--CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc-----------------hhhhcCC
Confidence            8775  222356788899999988866665543   24566666666665443322                 1123567


Q ss_pred             CCceEEEEEecccchhhhcchHHHhccCCccceEEE
Q 011021          372 CPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKL  407 (495)
Q Consensus       372 ~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l  407 (495)
                      +|+.|+++.+..     ...+|..++++++|+.+.+
T Consensus       278 ~L~~L~L~~n~~-----~~~iP~~l~~L~~L~~l~l  308 (328)
T 4fcg_A          278 QLEKLDLRGCVN-----LSRLPSLIAQLPANCIILV  308 (328)
T ss_dssp             TCCEEECTTCTT-----CCCCCGGGGGSCTTCEEEC
T ss_pred             CCCEEeCCCCCc-----hhhccHHHhhccCceEEeC
Confidence            777777754444     4456777777777775554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.62  E-value=1.7e-16  Score=162.74  Aligned_cols=289  Identities=13%  Similarity=0.041  Sum_probs=184.9

Q ss_pred             ccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce---
Q 011021          158 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---  232 (495)
Q Consensus       158 ~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~---  232 (495)
                      -..+|..+.  +++++|+|++|.+....  .+.++++|++|+|+++.++.-. ...+.++++|++|+|++|.. ..+   
T Consensus        23 l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~   98 (477)
T 2id5_A           23 FVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRSNRL-KLIPLG   98 (477)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCC-CSCCTT
T ss_pred             cCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeC-hhhhhCCccCCEEECCCCcC-CccCcc
Confidence            345565442  57888888888775542  5677888899988888773211 12356788889998888753 222   


Q ss_pred             eecCCCCccEEEeccccccceEEE----EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcC
Q 011021          233 CVSKASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKF  308 (495)
Q Consensus       233 ~i~~l~~L~~L~i~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~  308 (495)
                      .+.++++|+.|++++|.  +..+.    ..+++|++|+++.+......+..++++++|+.|+++++.++... ...+..+
T Consensus        99 ~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l  175 (477)
T 2id5_A           99 VFTGLSNLTKLDISENK--IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHL  175 (477)
T ss_dssp             SSTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC-HHHHTTC
T ss_pred             cccCCCCCCEEECCCCc--cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC-hhHhccc
Confidence            23467888888888874  22221    24678888888854443222334567888888888888776532 2335678


Q ss_pred             CCCcEEEecCCCCCccc---cccccccceEEeccCCCccEEecc---CCccceeeecccccc----eEeecCCCCceEEE
Q 011021          309 PSLEDLFVTRCCLPGKI---KISSNQLKNLLFRSCKYLKVIDVD---APNLLLFTYEFNPIP----IISINVPCPWKVSF  378 (495)
Q Consensus       309 ~~L~~L~L~~~~~~~~i---~~~~~~L~~L~l~~c~~l~~l~~~---~p~L~~l~~~~~~~~----~~~~~~~~L~~l~i  378 (495)
                      ++|+.|++.+|......   ...+++|+.|++.+|+.+..+...   .++|++++++++.+.    ..+.++++|+.|++
T Consensus       176 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  255 (477)
T 2id5_A          176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNL  255 (477)
T ss_dssp             TTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeEC
Confidence            88888888877432211   123567888888888777666532   447888888877643    23556788888888


Q ss_pred             EEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCCCccHHHHHHHHhhhcc
Q 011021          379 VCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICH  458 (495)
Q Consensus       379 ~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l~~~~~  458 (495)
                      +.+...     ...+..+.++++|+.|+++...... ..|..+..+     ++|+.|++++|.-....+   ..+..+++
T Consensus       256 s~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l-----~~L~~L~L~~N~l~~~~~---~~~~~l~~  321 (477)
T 2id5_A          256 SYNPIS-----TIEGSMLHELLRLQEIQLVGGQLAV-VEPYAFRGL-----NYLRVLNVSGNQLTTLEE---SVFHSVGN  321 (477)
T ss_dssp             CSSCCC-----EECTTSCTTCTTCCEEECCSSCCSE-ECTTTBTTC-----TTCCEEECCSSCCSCCCG---GGBSCGGG
T ss_pred             CCCcCC-----ccChhhccccccCCEEECCCCccce-ECHHHhcCc-----ccCCEEECCCCcCceeCH---hHcCCCcc
Confidence            644331     1224456778888866664332222 245666666     888888888876333222   12223567


Q ss_pred             CCeeEEeec
Q 011021          459 PRTLRVNVM  467 (495)
Q Consensus       459 l~~l~i~~~  467 (495)
                      |++|.+.+.
T Consensus       322 L~~L~l~~N  330 (477)
T 2id5_A          322 LETLILDSN  330 (477)
T ss_dssp             CCEEECCSS
T ss_pred             cCEEEccCC
Confidence            888888654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=7.7e-16  Score=166.91  Aligned_cols=301  Identities=10%  Similarity=0.043  Sum_probs=178.1

Q ss_pred             cCceEeEEEeecCCCccc----------------ccCcccc--cCCcceEEEEeccccCCC-C-CccCCCCCcEEEeeeE
Q 011021          142 NGVRELDFENITDENTVY----------------TLPQAIF--SANSVTNLRLVWCRLEQP-F-DSIMLCSLKKLTLERV  201 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~----------------~lp~~l~--~~~~L~~L~L~~c~l~~~-~-~~~~l~~L~~L~L~~~  201 (495)
                      .+++.|+  +..+.....                .+|..+.  .+++|++|+|++|.+... + .+.++++|+.|+|++|
T Consensus       448 ~~L~~L~--Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N  525 (876)
T 4ecn_A          448 TKLQIIY--FANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN  525 (876)
T ss_dssp             TTCCEEE--EESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred             CCCCEEE--CcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence            5788888  554332221                3888887  899999999999976443 2 6788999999999999


Q ss_pred             e-eChHHHHHHH-------hcCCCccEEEEEecCCCccee----ecCCCCccEEEecccc-ccceEEEEeCCcceEEEEe
Q 011021          202 C-LDEQMVQKLA-------SECPLLEDLCFSNCWGLKHLC----VSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLL  268 (495)
Q Consensus       202 ~-~~~~~l~~l~-------~~~p~Le~L~L~~c~~l~~~~----i~~l~~L~~L~i~~c~-~~l~~~~~~~p~L~~L~l~  268 (495)
                      . ++...++.-+       ..+|+|+.|++++|... .++    +.++++|+.|++++|. ..+. ....+++|+.|+++
T Consensus       526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls  603 (876)
T 4ecn_A          526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLD  603 (876)
T ss_dssp             TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECC
T ss_pred             CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECc
Confidence            8 6652333323       35569999999998754 332    4577899999998885 2222 11246778888887


Q ss_pred             ecCCCCceeEEeecCCC-ccEEEeeccccChHHHHHHhhcC--CCCcEEEecCCCCCc----------------------
Q 011021          269 FYGARRPRVVEVARSPH-LKKLDLVSVYFADNEFNHLISKF--PSLEDLFVTRCCLPG----------------------  323 (495)
Q Consensus       269 ~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~~--~~L~~L~L~~~~~~~----------------------  323 (495)
                      .+... ..+..+..+++ |+.|+++++.++.  +...+...  ++|+.|++++|...+                      
T Consensus       604 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~--lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~L  680 (876)
T 4ecn_A          604 YNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY--IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL  680 (876)
T ss_dssp             SSCCS-CCCTTSCEECTTCCEEECCSSCCCS--CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEEC
T ss_pred             CCccc-cchHHHhhccccCCEEECcCCCCCc--CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEc
Confidence            54443 33434556676 7777777776552  11111111  235555555553221                      


Q ss_pred             ------cccc----cccccceEEeccCCCccEEecc-----------CCccceeeeccccc---ceEee--cCCCCceEE
Q 011021          324 ------KIKI----SSNQLKNLLFRSCKYLKVIDVD-----------APNLLLFTYEFNPI---PIISI--NVPCPWKVS  377 (495)
Q Consensus       324 ------~i~~----~~~~L~~L~l~~c~~l~~l~~~-----------~p~L~~l~~~~~~~---~~~~~--~~~~L~~l~  377 (495)
                            .++.    .+++|+.|.++++. +..++..           +++|+.++++++.+   |..+.  .+++|+.|+
T Consensus       681 s~N~L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~  759 (876)
T 4ecn_A          681 SYNEIQKFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMD  759 (876)
T ss_dssp             CSSCCCSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEE
T ss_pred             cCCcCCccCHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEE
Confidence                  1211    23445555554442 2222211           12666777766653   22222  567777777


Q ss_pred             EEEecccchhhhcchHHHhccCCccceEEEEEEe----ccee-cccccccccCCCCCCccceeEEEecCCCccHHHHHHH
Q 011021          378 FVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYS----TKVL-YNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDC  452 (495)
Q Consensus       378 i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~----~~~~-~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~  452 (495)
                      ++.+.      +..+|..+.++++|+.|+++...    +... ..|..+..+     ++|+.|++++|.- +.+|.   .
T Consensus       760 Ls~N~------L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L-----~~L~~L~Ls~N~L-~~Ip~---~  824 (876)
T 4ecn_A          760 VSYNC------FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC-----PSLIQLQIGSNDI-RKVDE---K  824 (876)
T ss_dssp             CCSSC------CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC-----SSCCEEECCSSCC-CBCCS---C
T ss_pred             eCCCC------CCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcC-----CCCCEEECCCCCC-CccCH---h
Confidence            75433      22356666777778866664321    2222 346667666     7788888887764 33332   1


Q ss_pred             HhhhccCCeeEEeec
Q 011021          453 VFWICHPRTLRVNVM  467 (495)
Q Consensus       453 l~~~~~l~~l~i~~~  467 (495)
                      +  .++|+.|.+.++
T Consensus       825 l--~~~L~~LdLs~N  837 (876)
T 4ecn_A          825 L--TPQLYILDIADN  837 (876)
T ss_dssp             C--CSSSCEEECCSC
T ss_pred             h--cCCCCEEECCCC
Confidence            1  247788887776

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.61  E-value=6.2e-16  Score=163.33  Aligned_cols=260  Identities=13%  Similarity=0.114  Sum_probs=192.8

Q ss_pred             cccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEE
Q 011021          165 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME  244 (495)
Q Consensus       165 l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~  244 (495)
                      +..+++|+.|+++++.+...+....+++|++|+++++.++  .++.+  .++.|++|++.+|..........+++|+.|+
T Consensus       281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~--~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~  356 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK--QFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLD  356 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS--SCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred             cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc--ccccC--CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence            5567999999999998866556778999999999999882  23333  8999999999999877777777889999999


Q ss_pred             eccccccceEEE------EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecC
Q 011021          245 IRSFSEEIEIVE------ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTR  318 (495)
Q Consensus       245 i~~c~~~l~~~~------~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~  318 (495)
                      +++|.  +....      ..+++|++|+++.+... ..+..+..+++|+.|+++++.+.+......+..+++|+.|++++
T Consensus       357 ls~n~--l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  433 (606)
T 3vq2_A          357 LSRNA--LSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY  433 (606)
T ss_dssp             CCSSC--EEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTT
T ss_pred             CcCCc--cCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcC
Confidence            99885  33321      25789999999855432 23345678999999999999877643323456889999999999


Q ss_pred             CCCCcccc---ccccccceEEeccCCCcc-EEe---ccCCccceeeecccccc----eEeecCCCCceEEEEEecccchh
Q 011021          319 CCLPGKIK---ISSNQLKNLLFRSCKYLK-VID---VDAPNLLLFTYEFNPIP----IISINVPCPWKVSFVCKGVLNTH  387 (495)
Q Consensus       319 ~~~~~~i~---~~~~~L~~L~l~~c~~l~-~l~---~~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~  387 (495)
                      |...+..+   ..+++|+.|.+.++.--. .+.   -.+++|+.++++++.+.    ..+.++++|+.|+++.+..    
T Consensus       434 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l----  509 (606)
T 3vq2_A          434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL----  509 (606)
T ss_dssp             SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC----
T ss_pred             CCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcC----
Confidence            86443332   246789999998885433 122   24789999999998753    3356788999999965543    


Q ss_pred             hhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCC
Q 011021          388 WYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVP  442 (495)
Q Consensus       388 ~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~  442 (495)
                       ....+..++++++|+.|+++.+....+  |..+...    |.+|+.|++++|+-
T Consensus       510 -~~~~~~~~~~l~~L~~L~l~~N~l~~~--p~~~~~l----~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          510 -LFLDSSHYNQLYSLSTLDCSFNRIETS--KGILQHF----PKSLAFFNLTNNSV  557 (606)
T ss_dssp             -SCEEGGGTTTCTTCCEEECTTSCCCCE--ESCGGGS----CTTCCEEECCSCCC
T ss_pred             -CCcCHHHccCCCcCCEEECCCCcCccc--CHhHhhh----cccCcEEEccCCCc
Confidence             233477889999999887755544444  7767665    23699999999983

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.61  E-value=2.7e-16  Score=156.88  Aligned_cols=269  Identities=17%  Similarity=0.102  Sum_probs=169.8

Q ss_pred             cCceEeEEEeecCCCcccccCc-ccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCc
Q 011021          142 NGVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  218 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L  218 (495)
                      ++++.|+  +..+.  ...++. .+..+++|++|++++|.+...+  .+.++++|++|+++++.++. ....++.++++|
T Consensus        69 ~~L~~L~--L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L  143 (390)
T 3o6n_A           69 RQVELLN--LNDLQ--IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKL  143 (390)
T ss_dssp             CCCSEEE--CTTSC--CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             ccCcEEE--CCCCc--ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-CCHHHhcCCCCC
Confidence            6788877  54322  223333 5566788888888888776543  45678888888888887742 112234678888


Q ss_pred             cEEEEEecCCCcc--eeecCCCCccEEEeccccccceEEEE-eCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccc
Q 011021          219 EDLCFSNCWGLKH--LCVSKASKLKIMEIRSFSEEIEIVEI-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY  295 (495)
Q Consensus       219 e~L~L~~c~~l~~--~~i~~l~~L~~L~i~~c~~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  295 (495)
                      ++|++++|.....  ..+.++++|+.|++.++.  +..+.. ..++|+.++++++..     ..+...++|+.|+++++.
T Consensus       144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~L~~L~l~~n~l-----~~~~~~~~L~~L~l~~n~  216 (390)
T 3o6n_A          144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTHVDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNS  216 (390)
T ss_dssp             CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC--CSBCCGGGCTTCSEEECCSSCC-----SEEECCSSCSEEECCSSC
T ss_pred             cEEECCCCccCccChhhccCCCCCCEEECCCCc--CCccccccccccceeecccccc-----cccCCCCcceEEECCCCe
Confidence            8888888864322  124467888888888774  222222 467888888874332     123345688888888887


Q ss_pred             cChHHHHHHhhcCCCCcEEEecCCCCCcc-ccccccccceEEeccCCCccEEe----ccCCccceeeecccccc---eEe
Q 011021          296 FADNEFNHLISKFPSLEDLFVTRCCLPGK-IKISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP---IIS  367 (495)
Q Consensus       296 ~~~~~~~~l~~~~~~L~~L~L~~~~~~~~-i~~~~~~L~~L~l~~c~~l~~l~----~~~p~L~~l~~~~~~~~---~~~  367 (495)
                      ++...    ...+++|+.|++.+|...+. ....+++|+.|+++++. +..+.    ...++|++++++++.+.   ...
T Consensus       217 l~~~~----~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  291 (390)
T 3o6n_A          217 INVVR----GPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYG  291 (390)
T ss_dssp             CCEEE----CCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSSCCCEEECSS
T ss_pred             eeecc----ccccccccEEECCCCCCcccHHHcCCCCccEEECCCCc-CCCcChhHccccccCCEEECCCCcCcccCccc
Confidence            76521    12457899999888743221 12246788888888774 33331    23678888888887754   223


Q ss_pred             ecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCC
Q 011021          368 INVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVP  442 (495)
Q Consensus       368 ~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~  442 (495)
                      ..+++|+.|+++.+.      +..++..+..+++|+.|+++......+    .+...     ++|+.|++++|+-
T Consensus       292 ~~l~~L~~L~L~~n~------l~~~~~~~~~l~~L~~L~L~~N~i~~~----~~~~~-----~~L~~L~l~~N~~  351 (390)
T 3o6n_A          292 QPIPTLKVLDLSHNH------LLHVERNQPQFDRLENLYLDHNSIVTL----KLSTH-----HTLKNLTLSHNDW  351 (390)
T ss_dssp             SCCTTCCEEECCSSC------CCCCGGGHHHHTTCSEEECCSSCCCCC----CCCTT-----CCCSEEECCSSCE
T ss_pred             CCCCCCCEEECCCCc------ceecCccccccCcCCEEECCCCcccee----Cchhh-----ccCCEEEcCCCCc
Confidence            457888888885443      334555667788888666643322222    23333     7788888888773

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.60  E-value=3.7e-15  Score=155.41  Aligned_cols=165  Identities=13%  Similarity=0.090  Sum_probs=84.5

Q ss_pred             cCCCccEEEeeccccChHHHHH--HhhcCCCCcEEEecCCCCCc-----cccccccccceEEeccCCCccEEec---cCC
Q 011021          282 RSPHLKKLDLVSVYFADNEFNH--LISKFPSLEDLFVTRCCLPG-----KIKISSNQLKNLLFRSCKYLKVIDV---DAP  351 (495)
Q Consensus       282 ~~~~L~~L~l~~~~~~~~~~~~--l~~~~~~L~~L~L~~~~~~~-----~i~~~~~~L~~L~l~~c~~l~~l~~---~~p  351 (495)
                      .+++|+.|+++++.+++..+..  ....+++|+.|++++|...+     ......++|+.|+++++. ++.++-   ..+
T Consensus       332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~  410 (549)
T 2z81_A          332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPE  410 (549)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCT
T ss_pred             cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-CccCChhhcccc
Confidence            3555666666665555533322  12345666666666553211     112234566666666552 222221   245


Q ss_pred             ccceeeecccccc-eEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCC
Q 011021          352 NLLLFTYEFNPIP-IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPL  430 (495)
Q Consensus       352 ~L~~l~~~~~~~~-~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~  430 (495)
                      +|++++++++.+. +.....++|+.|+++.+..      .   ....++++|+.|+++.+....+  |+ ....     +
T Consensus       411 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l------~---~~~~~l~~L~~L~Ls~N~l~~i--p~-~~~l-----~  473 (549)
T 2z81_A          411 KMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNL------D---SFSLFLPRLQELYISRNKLKTL--PD-ASLF-----P  473 (549)
T ss_dssp             TCCEEECTTSCCSCCCTTSCTTCSEEECCSSCC------S---CCCCCCTTCCEEECCSSCCSSC--CC-GGGC-----T
T ss_pred             cccEEECCCCCcccccchhcCCceEEECCCCCh------h---hhcccCChhcEEECCCCccCcC--CC-cccC-----c
Confidence            5666666665543 1111124566666643322      1   1225677888776654433333  44 3334     7


Q ss_pred             ccceeEEEecCCCccHHHHHHHHhhhccCCeeEEeec
Q 011021          431 QVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVM  467 (495)
Q Consensus       431 ~L~~L~l~~~~~~~~~~~l~~~l~~~~~l~~l~i~~~  467 (495)
                      +|+.|++++|.-....+   ..+-.+++|++|.+.++
T Consensus       474 ~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~l~~N  507 (549)
T 2z81_A          474 VLLVMKISRNQLKSVPD---GIFDRLTSLQKIWLHTN  507 (549)
T ss_dssp             TCCEEECCSSCCCCCCT---TGGGGCTTCCEEECCSS
T ss_pred             cCCEEecCCCccCCcCH---HHHhcCcccCEEEecCC
Confidence            78888888876443333   22344677888888766

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.60  E-value=7e-16  Score=153.82  Aligned_cols=289  Identities=16%  Similarity=0.114  Sum_probs=170.9

Q ss_pred             cCceEeEEEeecCCCcccccCcccc-cCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCc
Q 011021          142 NGVRELDFENITDENTVYTLPQAIF-SANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  218 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L  218 (495)
                      .+++.++  +..  .....+|..++ .+++|++|++++|.+...+  .+..+++|++|+|+++.++.- ....+.+++.|
T Consensus        45 ~~l~~l~--l~~--~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L  119 (390)
T 3o6n_A           45 NNQKIVT--FKN--STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLL  119 (390)
T ss_dssp             CCCSEEE--EES--CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred             CCceEEE--ecC--CchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCCCCC
Confidence            5666666  332  12345665543 4677888888887765432  456778888888887776321 11234677888


Q ss_pred             cEEEEEecCCCccee---ecCCCCccEEEeccccccceEEE----EeCCcceEEEEeecCCCCceeEEeecCCCccEEEe
Q 011021          219 EDLCFSNCWGLKHLC---VSKASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDL  291 (495)
Q Consensus       219 e~L~L~~c~~l~~~~---i~~l~~L~~L~i~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  291 (495)
                      ++|++++|... .+.   +.++++|+.|++.+|.  +..+.    ...++|++|+++.+....   ..++.+++|+.|++
T Consensus       120 ~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~l~~L~~L~l  193 (390)
T 3o6n_A          120 TVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNN--LERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANV  193 (390)
T ss_dssp             CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC--CCBCCTTTTSSCTTCCEEECCSSCCSB---CCGGGCTTCSEEEC
T ss_pred             CEEECCCCccC-cCCHHHhcCCCCCcEEECCCCc--cCccChhhccCCCCCCEEECCCCcCCc---cccccccccceeec
Confidence            88888877532 222   2456778888887764  21111    145677777777443321   23456777777777


Q ss_pred             eccccChHHHHHHhhcCCCCcEEEecCCCCCccccccccccceEEeccCCCccEEe--ccCCccceeeecccccc----e
Q 011021          292 VSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVID--VDAPNLLLFTYEFNPIP----I  365 (495)
Q Consensus       292 ~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~~~~~~L~~L~l~~c~~l~~l~--~~~p~L~~l~~~~~~~~----~  365 (495)
                      +++.++.      ....++|+.|++.+|.....-....++|+.|.+.++.- ....  ...++|+.++++++.+.    .
T Consensus       194 ~~n~l~~------~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  266 (390)
T 3o6n_A          194 SYNLLST------LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL-TDTAWLLNYPGLVEVDLSYNELEKIMYH  266 (390)
T ss_dssp             CSSCCSE------EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSCCCEEESG
T ss_pred             ccccccc------cCCCCcceEEECCCCeeeeccccccccccEEECCCCCC-cccHHHcCCCCccEEECCCCcCCCcChh
Confidence            7776654      23345777777777632221112345777777776642 2111  23677778887777643    2


Q ss_pred             EeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCCCcc
Q 011021          366 ISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSD  445 (495)
Q Consensus       366 ~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~  445 (495)
                      .+..+++|+.|+++.+.      +..++.....+++|+.|+++.+....+  |..+...     ++|+.|++++|+-...
T Consensus       267 ~~~~l~~L~~L~L~~n~------l~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~l-----~~L~~L~L~~N~i~~~  333 (390)
T 3o6n_A          267 PFVKMQRLERLYISNNR------LVALNLYGQPIPTLKVLDLSHNHLLHV--ERNQPQF-----DRLENLYLDHNSIVTL  333 (390)
T ss_dssp             GGTTCSSCCEEECCSSC------CCEEECSSSCCTTCCEEECCSSCCCCC--GGGHHHH-----TTCSEEECCSSCCCCC
T ss_pred             HccccccCCEEECCCCc------CcccCcccCCCCCCCEEECCCCcceec--Ccccccc-----CcCCEEECCCCcccee
Confidence            34567778888875432      233444456677888666644433333  6666666     7788888887763221


Q ss_pred             HHHHHHHHhhhccCCeeEEeec
Q 011021          446 YETLLDCVFWICHPRTLRVNVM  467 (495)
Q Consensus       446 ~~~l~~~l~~~~~l~~l~i~~~  467 (495)
                       +     +-.+++|++|.+.+.
T Consensus       334 -~-----~~~~~~L~~L~l~~N  349 (390)
T 3o6n_A          334 -K-----LSTHHTLKNLTLSHN  349 (390)
T ss_dssp             -C-----CCTTCCCSEEECCSS
T ss_pred             -C-----chhhccCCEEEcCCC
Confidence             1     223567888888776

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.60  E-value=7.4e-16  Score=162.74  Aligned_cols=103  Identities=14%  Similarity=0.040  Sum_probs=47.4

Q ss_pred             CCccceeeecccccc-------eEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceeccccccc
Q 011021          350 APNLLLFTYEFNPIP-------IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELS  422 (495)
Q Consensus       350 ~p~L~~l~~~~~~~~-------~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~  422 (495)
                      +++|++++++++.+.       ..+..+++|+.|+++.+..     ....+..++++++|+.|+++...... ..|+.+.
T Consensus       448 l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l-----~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~  521 (606)
T 3t6q_A          448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL-----SSIDQHAFTSLKMMNHVDLSHNRLTS-SSIEALS  521 (606)
T ss_dssp             CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC-----CEECTTTTTTCTTCCEEECCSSCCCG-GGGGGGT
T ss_pred             CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc-----CccChhhhccccCCCEEECCCCccCc-CChhHhC
Confidence            445555555544421       1233455666666643322     11224455566666654443221111 2344554


Q ss_pred             ccCCCCCCccceeEEEecCCCccHHHHHHHHhhhccCCeeEEeec
Q 011021          423 ECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVM  467 (495)
Q Consensus       423 ~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l~~~~~l~~l~i~~~  467 (495)
                      .+     +.+ +|++++|.-....+.   .+-.+++|++|.+.++
T Consensus       522 ~l-----~~L-~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N  557 (606)
T 3t6q_A          522 HL-----KGI-YLNLASNHISIILPS---LLPILSQQRTINLRQN  557 (606)
T ss_dssp             TC-----CSC-EEECCSSCCCCCCGG---GHHHHHTSSEEECTTC
T ss_pred             cc-----ccc-EEECcCCcccccCHh---hcccCCCCCEEeCCCC
Confidence            44     555 666666653333332   2223455666666554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.60  E-value=8.5e-16  Score=162.29  Aligned_cols=213  Identities=12%  Similarity=0.020  Sum_probs=112.8

Q ss_pred             cCCCCccEEEecccc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHH-HHHHhhcCCCCc
Q 011021          235 SKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE-FNHLISKFPSLE  312 (495)
Q Consensus       235 ~~l~~L~~L~i~~c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~~L~  312 (495)
                      ..+++|++|++.+|. ..+..+  .+++|+.|+++.+...  ....++.+++|+.|+++++.++... .......+++|+
T Consensus       304 ~~~~~L~~L~l~~n~l~~lp~~--~l~~L~~L~l~~n~~~--~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~  379 (606)
T 3vq2_A          304 PKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR  379 (606)
T ss_dssp             CTTCCCSEEEEESCCCSSCCCC--CCSSCCEEEEESCSSC--EECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCC
T ss_pred             cccccCCEEEcccccCcccccC--CCCccceeeccCCcCc--cchhhccCCCCCEEECcCCccCCCcchhhhhccCCccc
Confidence            345567777777765 223322  6677777777744221  2334556777777777777654321 012234566666


Q ss_pred             EEEecCCCCCcccc---ccccccce-------------------------EEeccCCCccEEe---ccCCccceeeeccc
Q 011021          313 DLFVTRCCLPGKIK---ISSNQLKN-------------------------LLFRSCKYLKVID---VDAPNLLLFTYEFN  361 (495)
Q Consensus       313 ~L~L~~~~~~~~i~---~~~~~L~~-------------------------L~l~~c~~l~~l~---~~~p~L~~l~~~~~  361 (495)
                      .|++++|.. ..++   ..+++|+.                         |++++|.......   -.+++|++++++++
T Consensus       380 ~L~L~~n~l-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  458 (606)
T 3vq2_A          380 HLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN  458 (606)
T ss_dssp             EEECCSCSE-EEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred             EeECCCCcc-ccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC
Confidence            666666531 1111   12234444                         4444443211111   12456666666655


Q ss_pred             cc-----ceEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeE
Q 011021          362 PI-----PIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLE  436 (495)
Q Consensus       362 ~~-----~~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~  436 (495)
                      .+     |..+.++++|+.|+++.+..     ....+..++++++|+.|+++.+.... ..|..+..+     ++|+.|+
T Consensus       459 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l-----~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l-----~~L~~L~  527 (606)
T 3vq2_A          459 SFKDNTLSNVFANTTNLTFLDLSKCQL-----EQISWGVFDTLHRLQLLNMSHNNLLF-LDSSHYNQL-----YSLSTLD  527 (606)
T ss_dssp             EEGGGEECSCCTTCTTCCEEECTTSCC-----CEECTTTTTTCTTCCEEECCSSCCSC-EEGGGTTTC-----TTCCEEE
T ss_pred             cCCCcchHHhhccCCCCCEEECCCCcC-----CccChhhhcccccCCEEECCCCcCCC-cCHHHccCC-----CcCCEEE
Confidence            42     22344566777777743332     12235566777788866654332222 236666666     7788888


Q ss_pred             EEecCCCccHHHHHHHHhhhc-cCCeeEEeec
Q 011021          437 LHTNVPLSDYETLLDCVFWIC-HPRTLRVNVM  467 (495)
Q Consensus       437 l~~~~~~~~~~~l~~~l~~~~-~l~~l~i~~~  467 (495)
                      +++|.-. .++   ..+..++ +|++|.+.+.
T Consensus       528 l~~N~l~-~~p---~~~~~l~~~L~~l~l~~N  555 (606)
T 3vq2_A          528 CSFNRIE-TSK---GILQHFPKSLAFFNLTNN  555 (606)
T ss_dssp             CTTSCCC-CEE---SCGGGSCTTCCEEECCSC
T ss_pred             CCCCcCc-ccC---HhHhhhcccCcEEEccCC
Confidence            8877633 333   2244455 4888888764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.60  E-value=1.2e-16  Score=163.09  Aligned_cols=338  Identities=15%  Similarity=0.110  Sum_probs=217.2

Q ss_pred             HHH-HHHHcCceEeEEEeecCCCcc---cccCcccccCCcceEEEEeccccCCCC---CccCCC----CCcEEEeeeEee
Q 011021          135 WIR-LAVENGVRELDFENITDENTV---YTLPQAIFSANSVTNLRLVWCRLEQPF---DSIMLC----SLKKLTLERVCL  203 (495)
Q Consensus       135 wi~-~a~~~~l~~L~l~l~~~~~~~---~~lp~~l~~~~~L~~L~L~~c~l~~~~---~~~~l~----~L~~L~L~~~~~  203 (495)
                      |.. ....++++.|+  +..+....   ..++..+..+++|++|++++|.+....   ....++    +|++|+|++|.+
T Consensus        20 ~~~~~~~~~~L~~L~--L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i   97 (461)
T 1z7x_W           20 WAELLPLLQQCQVVR--LDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL   97 (461)
T ss_dssp             HHHHHHHHTTCSEEE--EESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCC
T ss_pred             HHHHHhhcCCccEEE--ccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCC
Confidence            444 33457999999  65443322   256777778899999999999875422   123344    799999999999


Q ss_pred             Ch---HHHHHHHhcCCCccEEEEEecCCCccee--------ecCCCCccEEEecccc-cc-----ceEEEEeCCcceEEE
Q 011021          204 DE---QMVQKLASECPLLEDLCFSNCWGLKHLC--------VSKASKLKIMEIRSFS-EE-----IEIVEISVPSLQQLT  266 (495)
Q Consensus       204 ~~---~~l~~l~~~~p~Le~L~L~~c~~l~~~~--------i~~l~~L~~L~i~~c~-~~-----l~~~~~~~p~L~~L~  266 (495)
                      ++   ..+...+..++.|++|++++|.. +...        ....++|++|++.+|. ..     +......+++|++|+
T Consensus        98 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i-~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~  176 (461)
T 1z7x_W           98 TGAGCGVLSSTLRTLPTLQELHLSDNLL-GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT  176 (461)
T ss_dssp             BGGGHHHHHHHTTSCTTCCEEECCSSBC-HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEE
T ss_pred             CHHHHHHHHHHHccCCceeEEECCCCcC-chHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEE
Confidence            54   35666678999999999999873 3211        1124689999999986 11     111112468999999


Q ss_pred             EeecCCCCceeEEee-----cCCCccEEEeeccccChHH---HHHHhhcCCCCcEEEecCCCCCccc---------cccc
Q 011021          267 LLFYGARRPRVVEVA-----RSPHLKKLDLVSVYFADNE---FNHLISKFPSLEDLFVTRCCLPGKI---------KISS  329 (495)
Q Consensus       267 l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~---~~~l~~~~~~L~~L~L~~~~~~~~i---------~~~~  329 (495)
                      ++++.........+.     ..++|++|+++++.+++..   +...+..+++|+.|++++|.. +..         ....
T Consensus       177 L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l-~~~~~~~l~~~~~~~~  255 (461)
T 1z7x_W          177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL-GDVGMAELCPGLLHPS  255 (461)
T ss_dssp             CCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC-HHHHHHHHHHHHTSTT
T ss_pred             CcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC-ChHHHHHHHHHHhcCC
Confidence            995443211111111     2569999999999988754   344456789999999999842 221         1136


Q ss_pred             cccceEEeccCCCccE-----Ee---ccCCccceeeecccccc----eE-----eecCCCCceEEEEEecccchhhhcch
Q 011021          330 NQLKNLLFRSCKYLKV-----ID---VDAPNLLLFTYEFNPIP----II-----SINVPCPWKVSFVCKGVLNTHWYLKL  392 (495)
Q Consensus       330 ~~L~~L~l~~c~~l~~-----l~---~~~p~L~~l~~~~~~~~----~~-----~~~~~~L~~l~i~~~~~~~~~~~~~l  392 (495)
                      ++|+.|.+++|. +..     +.   -.+++|++++++++.+.    ..     ..+.++|++|+++.+...... ...+
T Consensus       256 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~-~~~l  333 (461)
T 1z7x_W          256 SRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC-CSHF  333 (461)
T ss_dssp             CCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG-HHHH
T ss_pred             CCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH-HHHH
Confidence            799999999884 332     21   13788999999987742    01     112368999999755443321 3446


Q ss_pred             HHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCCCc-cHHHHHHHHhhhccCCeeEEeeccccc
Q 011021          393 KKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLS-DYETLLDCVFWICHPRTLRVNVMFEED  471 (495)
Q Consensus       393 ~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~-~~~~l~~~l~~~~~l~~l~i~~~~~~~  471 (495)
                      +..+.++++|++|+++.+.... ..+..+......+.++|++|++++|.-.. ....+...+..+++|++|.+.++.+..
T Consensus       334 ~~~l~~~~~L~~L~Ls~n~i~~-~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          334 SSVLAQNRFLLELQISNNRLED-AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHHHHHCSSCCEEECCSSBCHH-HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             HHHHhhCCCccEEEccCCcccc-ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            7788889999977774332221 12233332100112689999998886432 223344566667889999998886666


Q ss_pred             hhHHHHHH
Q 011021          472 HKFITVCY  479 (495)
Q Consensus       472 ~~~~~~~~  479 (495)
                      .+......
T Consensus       413 ~~~~~l~~  420 (461)
T 1z7x_W          413 AGILQLVE  420 (461)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66554443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.60  E-value=6.9e-16  Score=162.51  Aligned_cols=343  Identities=16%  Similarity=0.182  Sum_probs=205.0

Q ss_pred             CcccceEEEEEeccCCCCChhHHHHHHHHHHHcCceEeEEEeecC-CCcccccCcccccCCcceEEEEeccccCCCC---
Q 011021          110 KFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITD-ENTVYTLPQAIFSANSVTNLRLVWCRLEQPF---  185 (495)
Q Consensus       110 ~~~l~~l~l~~~~~~~~~~~~~~~~wi~~a~~~~l~~L~l~l~~~-~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~---  185 (495)
                      ...++.+.+....    .....+.. +.. ..+++++|+  +..+ ......++.....|++|++|++++|.+....   
T Consensus       104 ~~~L~~L~L~~~~----~~~~~~~~-l~~-~~~~L~~L~--L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~  175 (594)
T 2p1m_B          104 YTWLEEIRLKRMV----VTDDCLEL-IAK-SFKNFKVLV--LSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW  175 (594)
T ss_dssp             CTTCCEEEEESCB----CCHHHHHH-HHH-HCTTCCEEE--EESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG
T ss_pred             CCCCCeEEeeCcE----EcHHHHHH-HHH-hCCCCcEEe--CCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH
Confidence            3567888777431    11111211 111 236899998  5433 1122235554457899999999998865422   


Q ss_pred             ---CccCCCCCcEEEeeeEe--eChHHHHHHHhcCCCccEEEEEecCCCccee--ecCCCCccEEEeccccc--------
Q 011021          186 ---DSIMLCSLKKLTLERVC--LDEQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKASKLKIMEIRSFSE--------  250 (495)
Q Consensus       186 ---~~~~l~~L~~L~L~~~~--~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~--i~~l~~L~~L~i~~c~~--------  250 (495)
                         ....+++|++|+++++.  ++...+..++.+||+|++|++.+|..++.+.  +..+++|+.|.+..|..        
T Consensus       176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~  255 (594)
T 2p1m_B          176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS  255 (594)
T ss_dssp             GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH
T ss_pred             HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH
Confidence               23467899999999886  5778888888889999999999985443311  12456777776543310        


Q ss_pred             ----------cceEE--------------EEeCCcceEEEEeecCCCCce-eEEeecCCCccEEEeeccccChHHHHHHh
Q 011021          251 ----------EIEIV--------------EISVPSLQQLTLLFYGARRPR-VVEVARSPHLKKLDLVSVYFADNEFNHLI  305 (495)
Q Consensus       251 ----------~l~~~--------------~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  305 (495)
                                .+..+              ...+++|++|+++++...... ...+..+++|++|++.++ +++..+..+.
T Consensus       256 ~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~  334 (594)
T 2p1m_B          256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLA  334 (594)
T ss_dssp             HHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHH
T ss_pred             HHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHH
Confidence                      11111              114688999999855432111 112347899999999988 6666677777


Q ss_pred             hcCCCCcEEEecC--------CCCCcc-----ccccccccceEEeccCCCccE-----EeccCCccceeeec--c----c
Q 011021          306 SKFPSLEDLFVTR--------CCLPGK-----IKISSNQLKNLLFRSCKYLKV-----IDVDAPNLLLFTYE--F----N  361 (495)
Q Consensus       306 ~~~~~L~~L~L~~--------~~~~~~-----i~~~~~~L~~L~l~~c~~l~~-----l~~~~p~L~~l~~~--~----~  361 (495)
                      ..+++|+.|++.+        |..+..     +...+++|+.|.+ .|.++..     +.-.+|+|+.+++.  +    .
T Consensus       335 ~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~  413 (594)
T 2p1m_B          335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD  413 (594)
T ss_dssp             HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred             HhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence            7899999999944        333322     1223678888844 4555432     11237888888887  3    1


Q ss_pred             ccc---------eEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccc-cccCCCCCCc
Q 011021          362 PIP---------IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDEL-SECSPSLPLQ  431 (495)
Q Consensus       362 ~~~---------~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~-~~~~~~~p~~  431 (495)
                      .+.         ..+.++++|+.|+++.  ...+   ..++.....+++|+.|+++.+..... .+..+ ...     ++
T Consensus       414 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~---~~~~~l~~~~~~L~~L~L~~~~i~~~-~~~~l~~~~-----~~  482 (594)
T 2p1m_B          414 YLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTD---KVFEYIGTYAKKMEMLSVAFAGDSDL-GMHHVLSGC-----DS  482 (594)
T ss_dssp             TTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCH---HHHHHHHHHCTTCCEEEEESCCSSHH-HHHHHHHHC-----TT
T ss_pred             cccCCchhhHHHHHHhhCCCccEEeecC--cccH---HHHHHHHHhchhccEeeccCCCCcHH-HHHHHHhcC-----CC
Confidence            111         1134678899998843  2111   22333444588899777754433211 12222 345     78


Q ss_pred             cceeEEEecCCCccHHHHHHHHhhhccCCeeEEeeccccchhHH
Q 011021          432 VENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVMFEEDHKFI  475 (495)
Q Consensus       432 L~~L~l~~~~~~~~~~~l~~~l~~~~~l~~l~i~~~~~~~~~~~  475 (495)
                      |+.|++++|+....  .+...+..+++|++|.+.+|....++..
T Consensus       483 L~~L~L~~n~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~  524 (594)
T 2p1m_B          483 LRKLEIRDCPFGDK--ALLANASKLETMRSLWMSSCSVSFGACK  524 (594)
T ss_dssp             CCEEEEESCSCCHH--HHHHTGGGGGGSSEEEEESSCCBHHHHH
T ss_pred             cCEEECcCCCCcHH--HHHHHHHhCCCCCEEeeeCCCCCHHHHH
Confidence            99999998875221  2222333467899999998865444433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.59  E-value=2.5e-16  Score=166.32  Aligned_cols=195  Identities=15%  Similarity=0.056  Sum_probs=97.8

Q ss_pred             CcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcccc----ccccccceE
Q 011021          260 PSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK----ISSNQLKNL  335 (495)
Q Consensus       260 p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~----~~~~~L~~L  335 (495)
                      ++|++|+++++... ..+..++.+++|++|+++++.++.... ..+..+++|+.|++.+|.....++    ..+++|+.|
T Consensus       278 ~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  355 (606)
T 3t6q_A          278 SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL  355 (606)
T ss_dssp             TTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred             cCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCch-hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence            45555555533221 223334455666666666665544211 223456666666666654332222    134566666


Q ss_pred             EeccCCCccEEe------ccCCccceeeecccccc----eEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceE
Q 011021          336 LFRSCKYLKVID------VDAPNLLLFTYEFNPIP----IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESL  405 (495)
Q Consensus       336 ~l~~c~~l~~l~------~~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L  405 (495)
                      +++++.- ..+.      ..+++|++++++++.+.    ..+..+++|+.|+++.+.....    ..+..++++++|+.|
T Consensus       356 ~l~~n~l-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L  430 (606)
T 3t6q_A          356 DLSHDDI-ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK----DAQSPFQNLHLLKVL  430 (606)
T ss_dssp             ECCSSCC-CEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC----TTCCTTTTCTTCCEE
T ss_pred             ECCCCcc-ccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc----ccchhhhCcccCCEE
Confidence            6665542 2221      12566666666666532    2334566677777643322110    112346667777766


Q ss_pred             EEEEEecceecccccccccCCCCCCccceeEEEecCCCccHHHHHHHHhhhccCCeeEEeec
Q 011021          406 KLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVM  467 (495)
Q Consensus       406 ~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l~~~~~l~~l~i~~~  467 (495)
                      +++.+.... ..|+.+..+     ++|+.|++++|+-..........+-.+++|++|.+.+|
T Consensus       431 ~l~~n~l~~-~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n  486 (606)
T 3t6q_A          431 NLSHSLLDI-SSEQLFDGL-----PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC  486 (606)
T ss_dssp             ECTTCCCBT-TCTTTTTTC-----TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred             ECCCCccCC-cCHHHHhCC-----CCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence            653322211 234455555     77888888877632210001123344677888888777

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.58  E-value=3e-16  Score=159.80  Aligned_cols=308  Identities=12%  Similarity=0.029  Sum_probs=174.3

Q ss_pred             cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCC--C-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCc
Q 011021          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQP--F-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  218 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~--~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L  218 (495)
                      +++++|+  +..+.. ....|..+..+++|++|++++|.+...  + .+.++++|++|+|+++.++... ...+.++++|
T Consensus        30 ~~l~~L~--Ls~n~i-~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L  105 (455)
T 3v47_A           30 AHVNYVD--LSLNSI-AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE-TGAFNGLANL  105 (455)
T ss_dssp             TTCCEEE--CCSSCC-CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEEC-TTTTTTCTTC
T ss_pred             CccCEEE--ecCCcc-CcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccC-hhhccCcccC
Confidence            4566666  433221 112344555667777777777655311  1 3556677777777776653211 1224566777


Q ss_pred             cEEEEEecCCCcc-e---eecCCCCccEEEecccc-ccceEE--EEeCCcceEEEEeecCCCCceeEEeecC--CCccEE
Q 011021          219 EDLCFSNCWGLKH-L---CVSKASKLKIMEIRSFS-EEIEIV--EISVPSLQQLTLLFYGARRPRVVEVARS--PHLKKL  289 (495)
Q Consensus       219 e~L~L~~c~~l~~-~---~i~~l~~L~~L~i~~c~-~~l~~~--~~~~p~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L  289 (495)
                      ++|++++|...+. .   .+.++++|+.|++++|. ......  ...+++|++|+++++......+..+..+  ++|+.|
T Consensus       106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L  185 (455)
T 3v47_A          106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL  185 (455)
T ss_dssp             CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE
T ss_pred             CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccc
Confidence            7777777654221 1   14456677777777664 111111  1245667777776443322222222222  456666


Q ss_pred             EeeccccChHH-------HHHHhhcCCCCcEEEecCCCCCccccc------cccccceEEeccCCCccE---------E-
Q 011021          290 DLVSVYFADNE-------FNHLISKFPSLEDLFVTRCCLPGKIKI------SSNQLKNLLFRSCKYLKV---------I-  346 (495)
Q Consensus       290 ~l~~~~~~~~~-------~~~l~~~~~~L~~L~L~~~~~~~~i~~------~~~~L~~L~l~~c~~l~~---------l-  346 (495)
                      +++++.+.+..       .......+++|+.|++++|...+.++.      ...+++.|.+..+.....         . 
T Consensus       186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  265 (455)
T 3v47_A          186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD  265 (455)
T ss_dssp             ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCC
T ss_pred             ccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCc
Confidence            66666544310       001122446788888887754333222      125677777776633210         0 


Q ss_pred             -----eccCCccceeeecccccc----eEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecc
Q 011021          347 -----DVDAPNLLLFTYEFNPIP----IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYN  417 (495)
Q Consensus       347 -----~~~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~  417 (495)
                           ....++|+.++++++.+.    ..+.++++|+.|+++.+..     ....+..+.++++|+.|+++.+.... ..
T Consensus       266 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-----~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~  339 (455)
T 3v47_A          266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-----NKIDDNAFWGLTHLLKLNLSQNFLGS-ID  339 (455)
T ss_dssp             TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC-----CEECTTTTTTCTTCCEEECCSSCCCE-EC
T ss_pred             ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcc-----cccChhHhcCcccCCEEECCCCccCC-cC
Confidence                 012367888998887743    3356788999999954433     22335678889999977775433322 24


Q ss_pred             cccccccCCCCCCccceeEEEecCCCccHHHHHHHHhhhccCCeeEEeec
Q 011021          418 LDELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVM  467 (495)
Q Consensus       418 p~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l~~~~~l~~l~i~~~  467 (495)
                      +..+..+     ++|+.|++++|.-....+   ..+-.+++|++|.+.++
T Consensus       340 ~~~~~~l-----~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N  381 (455)
T 3v47_A          340 SRMFENL-----DKLEVLDLSYNHIRALGD---QSFLGLPNLKELALDTN  381 (455)
T ss_dssp             GGGGTTC-----TTCCEEECCSSCCCEECT---TTTTTCTTCCEEECCSS
T ss_pred             hhHhcCc-----ccCCEEECCCCcccccCh---hhccccccccEEECCCC
Confidence            5667666     899999999987544333   23345789999999887

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.58  E-value=6.4e-16  Score=162.80  Aligned_cols=270  Identities=17%  Similarity=0.099  Sum_probs=182.1

Q ss_pred             cCceEeEEEeecCCCcccccC-cccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCc
Q 011021          142 NGVRELDFENITDENTVYTLP-QAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  218 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L  218 (495)
                      ++++.|+  +..+.  ...++ ..+..+++|++|+|++|.+...+  .++++++|++|+|++|.++. ....++.++++|
T Consensus        75 ~~L~~L~--L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L  149 (597)
T 3oja_B           75 RQVELLN--LNDLQ--IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKL  149 (597)
T ss_dssp             CCCSEEE--CTTSC--CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             CCCcEEE--CCCCC--CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCHHHhccCCCC
Confidence            6788888  54332  22333 36667899999999998876554  45789999999999998742 122335788999


Q ss_pred             cEEEEEecCCCcce--eecCCCCccEEEeccccccceEEEE-eCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccc
Q 011021          219 EDLCFSNCWGLKHL--CVSKASKLKIMEIRSFSEEIEIVEI-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY  295 (495)
Q Consensus       219 e~L~L~~c~~l~~~--~i~~l~~L~~L~i~~c~~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  295 (495)
                      ++|++++|...+..  .+.++++|+.|++++|.  +..+.. ..++|+.|+++++..     ..++..++|+.|+++++.
T Consensus       150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~l~~L~~L~l~~n~l-----~~l~~~~~L~~L~ls~n~  222 (597)
T 3oja_B          150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTHVDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNS  222 (597)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC--CSBCCGGGCTTCSEEECCSSCC-----SEEECCTTCSEEECCSSC
T ss_pred             CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC--CCCcChhhhhhhhhhhcccCcc-----ccccCCchhheeeccCCc
Confidence            99999988643322  34567899999998885  333332 468899998884332     123456789999999888


Q ss_pred             cChHHHHHHhhcCCCCcEEEecCCCCCcc-ccccccccceEEeccCCCccEEe---ccCCccceeeecccccc---eEee
Q 011021          296 FADNEFNHLISKFPSLEDLFVTRCCLPGK-IKISSNQLKNLLFRSCKYLKVID---VDAPNLLLFTYEFNPIP---IISI  368 (495)
Q Consensus       296 ~~~~~~~~l~~~~~~L~~L~L~~~~~~~~-i~~~~~~L~~L~l~~c~~l~~l~---~~~p~L~~l~~~~~~~~---~~~~  368 (495)
                      ++...    ....++|+.|++++|...+. ....+++|+.|+++++.--....   ..+++|+.++++++.+.   ....
T Consensus       223 l~~~~----~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~  298 (597)
T 3oja_B          223 INVVR----GPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ  298 (597)
T ss_dssp             CCEEE----CSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSS
T ss_pred             ccccc----cccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccc
Confidence            76421    12347899999998843322 12246789999998875332222   23788999999988754   3334


Q ss_pred             cCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCC
Q 011021          369 NVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVP  442 (495)
Q Consensus       369 ~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~  442 (495)
                      .+++|+.|+++.+.      +..++..+..+++|+.|+++.+....+    .+...     ++|+.|++++|+-
T Consensus       299 ~l~~L~~L~Ls~N~------l~~i~~~~~~l~~L~~L~L~~N~l~~~----~~~~~-----~~L~~L~l~~N~~  357 (597)
T 3oja_B          299 PIPTLKVLDLSHNH------LLHVERNQPQFDRLENLYLDHNSIVTL----KLSTH-----HTLKNLTLSHNDW  357 (597)
T ss_dssp             CCTTCCEEECCSSC------CCCCGGGHHHHTTCSEEECCSSCCCCC----CCCTT-----CCCSEEECCSSCE
T ss_pred             cCCCCcEEECCCCC------CCccCcccccCCCCCEEECCCCCCCCc----Chhhc-----CCCCEEEeeCCCC
Confidence            57899999996443      335666678889999776643332222    24333     7899999998873

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.57  E-value=5.4e-16  Score=168.13  Aligned_cols=173  Identities=16%  Similarity=0.103  Sum_probs=128.4

Q ss_pred             cCcccccCCcceEEEEeccccCC------------------CC-Ccc--CCCCCcEEEeeeEeeChHHHHHHHhcCCCcc
Q 011021          161 LPQAIFSANSVTNLRLVWCRLEQ------------------PF-DSI--MLCSLKKLTLERVCLDEQMVQKLASECPLLE  219 (495)
Q Consensus       161 lp~~l~~~~~L~~L~L~~c~l~~------------------~~-~~~--~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  219 (495)
                      +|..+..+++|++|+|++|.+..                  .+ ..+  ++++|++|+|++|.+... ++..+.++++|+
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L~  518 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQ  518 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS-CCGGGGGCSSCC
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc-ChHHHhCCCCCC
Confidence            89999999999999999998876                  34 444  899999999999986322 234578999999


Q ss_pred             EEEEEecCCCcc--e---------eecCCCCccEEEeccccccceEEE-----EeCCcceEEEEeecCCCCceeEEeecC
Q 011021          220 DLCFSNCWGLKH--L---------CVSKASKLKIMEIRSFSEEIEIVE-----ISVPSLQQLTLLFYGARRPRVVEVARS  283 (495)
Q Consensus       220 ~L~L~~c~~l~~--~---------~i~~l~~L~~L~i~~c~~~l~~~~-----~~~p~L~~L~l~~~~~~~~~~~~~~~~  283 (495)
                      .|++++|..+..  +         ....+++|+.|++.+|.  +..+.     ..+++|+.|+++.+... ..+ .++.+
T Consensus       519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~--L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L  594 (876)
T 4ecn_A          519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN--LEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTN  594 (876)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC--CCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTT
T ss_pred             EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc--CCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCC
Confidence            999999974432  2         12245699999999986  22332     25789999999965554 445 78889


Q ss_pred             CCccEEEeeccccChHHHHHHhhcCCC-CcEEEecCCCCCcccccc-----ccccceEEeccCC
Q 011021          284 PHLKKLDLVSVYFADNEFNHLISKFPS-LEDLFVTRCCLPGKIKIS-----SNQLKNLLFRSCK  341 (495)
Q Consensus       284 ~~L~~L~l~~~~~~~~~~~~l~~~~~~-L~~L~L~~~~~~~~i~~~-----~~~L~~L~l~~c~  341 (495)
                      ++|+.|+++++.++.  +...+..+++ |+.|++++|.. ..++..     .++|+.|.++.+.
T Consensus       595 ~~L~~L~Ls~N~l~~--lp~~l~~l~~~L~~L~Ls~N~L-~~lp~~~~~~~~~~L~~L~Ls~N~  655 (876)
T 4ecn_A          595 VKLTDLKLDYNQIEE--IPEDFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNK  655 (876)
T ss_dssp             SEESEEECCSSCCSC--CCTTSCEECTTCCEEECCSSCC-CSCCSCCCTTCSSCEEEEECCSSC
T ss_pred             CcceEEECcCCcccc--chHHHhhccccCCEEECcCCCC-CcCchhhhccccCCCCEEECcCCc
Confidence            999999999998872  3333567888 99999999853 344432     1347777777664

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.56  E-value=2.5e-15  Score=155.74  Aligned_cols=259  Identities=14%  Similarity=0.063  Sum_probs=146.3

Q ss_pred             cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEE
Q 011021          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L  221 (495)
                      .+++.|+  +..+.. ....|..+..+++|++|+|++|.+...+.. .+++|++|+|++|.++...++..+.++++|++|
T Consensus        45 ~~L~~L~--Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L  120 (520)
T 2z7x_B           45 SKLRILI--ISHNRI-QYLDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL  120 (520)
T ss_dssp             TTCCEEE--CCSSCC-CEEEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEE
T ss_pred             ccccEEe--cCCCcc-CCcChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEE
Confidence            4566666  433221 112244556677777777777766543322 677777777777776432222335667777777


Q ss_pred             EEEecCCCcceeecCCCCc--cEEEeccccc--------cceE---------------------EE-EeCCcceEEEEee
Q 011021          222 CFSNCWGLKHLCVSKASKL--KIMEIRSFSE--------EIEI---------------------VE-ISVPSLQQLTLLF  269 (495)
Q Consensus       222 ~L~~c~~l~~~~i~~l~~L--~~L~i~~c~~--------~l~~---------------------~~-~~~p~L~~L~l~~  269 (495)
                      ++++|... ...+.++++|  +.|++.+|.-        .+..                     .. ..+++|+.++++.
T Consensus       121 ~L~~n~l~-~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~  199 (520)
T 2z7x_B          121 GLSTTHLE-KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC  199 (520)
T ss_dssp             EEEESSCC-GGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEE
T ss_pred             EecCcccc-hhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccc
Confidence            77776532 2334445566  7777766530        0000                     00 1256677777764


Q ss_pred             cC-------CCCceeEEeecCCCccEEEeeccccChHHHHHHhh--cCCCCcEEEecCCCCCcccccc--------cc--
Q 011021          270 YG-------ARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLIS--KFPSLEDLFVTRCCLPGKIKIS--------SN--  330 (495)
Q Consensus       270 ~~-------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~--~~~~L~~L~L~~~~~~~~i~~~--------~~--  330 (495)
                      +.       ..+..+ .++.+++|+.|++.++.+++..+..+..  ..++|+.|++++|...+.++..        .+  
T Consensus       200 n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L  278 (520)
T 2z7x_B          200 VLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKAL  278 (520)
T ss_dssp             CCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEE
T ss_pred             cccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCcee
Confidence            32       111111 4567788888888888877755554433  3568888888877432222221        12  


Q ss_pred             ------------------------ccceEEeccCCCccEEe--ccCCccceeeeccccc----ceEeecCCCCceEEEEE
Q 011021          331 ------------------------QLKNLLFRSCKYLKVID--VDAPNLLLFTYEFNPI----PIISINVPCPWKVSFVC  380 (495)
Q Consensus       331 ------------------------~L~~L~l~~c~~l~~l~--~~~p~L~~l~~~~~~~----~~~~~~~~~L~~l~i~~  380 (495)
                                              +|+.|.++++.- ..+.  ..+++|++++++++.+    +..+..+++|+.|+++.
T Consensus       279 ~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  357 (520)
T 2z7x_B          279 SIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM-VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM  357 (520)
T ss_dssp             EEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCC-CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCS
T ss_pred             EeccccccceecchhhhhcccccCceeEEEcCCCcc-ccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccC
Confidence                                    244444444432 1111  2467788888887763    23445678888888864


Q ss_pred             ecccchhhhcchHHHhccCCccceEEEEEE
Q 011021          381 KGVLNTHWYLKLKKFLGVSKQIESLKLSLY  410 (495)
Q Consensus       381 ~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~  410 (495)
                      +...+   +..++..++++++|+.|+++..
T Consensus       358 N~l~~---l~~~~~~~~~l~~L~~L~Ls~N  384 (520)
T 2z7x_B          358 NQLKE---LSKIAEMTTQMKSLQQLDISQN  384 (520)
T ss_dssp             SCCCB---HHHHHHHHTTCTTCCEEECCSS
T ss_pred             CccCc---cccchHHHhhCCCCCEEECCCC
Confidence            44321   2245667888888887776443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.56  E-value=3.8e-16  Score=165.63  Aligned_cols=306  Identities=10%  Similarity=0.063  Sum_probs=197.9

Q ss_pred             cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccc-cCC--CC-CccC------CCCCcEEEeeeEeeChHHHHH-
Q 011021          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCR-LEQ--PF-DSIM------LCSLKKLTLERVCLDEQMVQK-  210 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~-l~~--~~-~~~~------l~~L~~L~L~~~~~~~~~l~~-  210 (495)
                      .++++|+  +..+. ....+|..+..+++|++|++++|. +..  .+ ..+.      +++|++|+++++.++  .++. 
T Consensus       249 ~~L~~L~--L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~  323 (636)
T 4eco_A          249 KDLTDVE--VYNCP-NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVE  323 (636)
T ss_dssp             TTCCEEE--EECCT-TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCH
T ss_pred             CCCCEEE--ecCCc-CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCch
Confidence            5788888  55332 234788888899999999999997 654  22 3334      489999999999885  3433 


Q ss_pred             -HHhcCCCccEEEEEecCCCcce-eecCCCCccEEEeccccccceEEE---EeCC-------------------------
Q 011021          211 -LASECPLLEDLCFSNCWGLKHL-CVSKASKLKIMEIRSFSEEIEIVE---ISVP-------------------------  260 (495)
Q Consensus       211 -l~~~~p~Le~L~L~~c~~l~~~-~i~~l~~L~~L~i~~c~~~l~~~~---~~~p-------------------------  260 (495)
                       .+.++++|++|++++|...+.+ .+..+++|+.|++++|.  +..+.   ...+                         
T Consensus       324 ~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~--l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l  401 (636)
T 4eco_A          324 TSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ--ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSV  401 (636)
T ss_dssp             HHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE--EEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCS
T ss_pred             hhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc--cccccHhhhhhcccCcEEEccCCcCcccchhhhhccc
Confidence             5778999999999988643222 22234556666665553  11110   1122                         


Q ss_pred             -cceEEEEeecCCCCceeEEee-------cCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcccccc-c--
Q 011021          261 -SLQQLTLLFYGARRPRVVEVA-------RSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKIS-S--  329 (495)
Q Consensus       261 -~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~~~-~--  329 (495)
                       +|+.|+++.+......+..++       .+++|+.|+++++.++. ....+...+++|+.|++++|... .++.. +  
T Consensus       402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~  479 (636)
T 4eco_A          402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLT-EIPKNSLKD  479 (636)
T ss_dssp             SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEE
T ss_pred             CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCC-CcCHHHhcc
Confidence             455555554333322222333       45688888888887763 23344556899999999988433 44321 1  


Q ss_pred             --------cccceEEeccCCCccEEe---c--cCCccceeeeccccc---ceEeecCCCCceEEEEEec--ccchhhhcc
Q 011021          330 --------NQLKNLLFRSCKYLKVID---V--DAPNLLLFTYEFNPI---PIISINVPCPWKVSFVCKG--VLNTHWYLK  391 (495)
Q Consensus       330 --------~~L~~L~l~~c~~l~~l~---~--~~p~L~~l~~~~~~~---~~~~~~~~~L~~l~i~~~~--~~~~~~~~~  391 (495)
                              ++|+.|+++++. +..+.   .  ..++|+.++++++.+   |..+.++++|+.|+++.+.  ..+. ....
T Consensus       480 ~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~-l~~~  557 (636)
T 4eco_A          480 ENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNR-TLRE  557 (636)
T ss_dssp             TTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCB-CCCC
T ss_pred             ccccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCc-cccc
Confidence                    289999998875 33443   1  578999999998874   4455678999999996433  1111 1345


Q ss_pred             hHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCC-----CccHHHHHHHHhhhccCCeeEEee
Q 011021          392 LKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVP-----LSDYETLLDCVFWICHPRTLRVNV  466 (495)
Q Consensus       392 l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~-----~~~~~~l~~~l~~~~~l~~l~i~~  466 (495)
                      +|..+.++++|+.|+++.+....+  |..+.       ++|+.|++++|+-     ....+.+..+...+...++..|.+
T Consensus       558 ~p~~l~~l~~L~~L~Ls~N~l~~i--p~~~~-------~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~  628 (636)
T 4eco_A          558 WPEGITLCPSLTQLQIGSNDIRKV--NEKIT-------PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRG  628 (636)
T ss_dssp             CCTTGGGCSSCCEEECCSSCCCBC--CSCCC-------TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEES
T ss_pred             ChHHHhcCCCCCEEECCCCcCCcc--CHhHh-------CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCC
Confidence            678889999999887755444433  55542       6799999999972     333444444444455667778888


Q ss_pred             c
Q 011021          467 M  467 (495)
Q Consensus       467 ~  467 (495)
                      |
T Consensus       629 C  629 (636)
T 4eco_A          629 C  629 (636)
T ss_dssp             C
T ss_pred             C
Confidence            8

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.56  E-value=1.3e-15  Score=160.39  Aligned_cols=294  Identities=16%  Similarity=0.091  Sum_probs=192.0

Q ss_pred             cCceEeEEEeecCCCcccccCcccc-cCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCc
Q 011021          142 NGVRELDFENITDENTVYTLPQAIF-SANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  218 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L  218 (495)
                      .+++.++  +..  .....+|..++ .+++|++|+|++|.+...+  .+..+++|++|+|+++.++.- ....+.++++|
T Consensus        51 ~~l~~l~--l~~--~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L  125 (597)
T 3oja_B           51 NNQKIVT--FKN--STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLL  125 (597)
T ss_dssp             CCCSEEE--ESS--CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred             CCceEEE--eeC--CCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCC
Confidence            4666666  332  23455666544 4788999999998876543  567889999999998887431 12335788999


Q ss_pred             cEEEEEecCCCccee---ecCCCCccEEEecccc-ccceEEE-EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeec
Q 011021          219 EDLCFSNCWGLKHLC---VSKASKLKIMEIRSFS-EEIEIVE-ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS  293 (495)
Q Consensus       219 e~L~L~~c~~l~~~~---i~~l~~L~~L~i~~c~-~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  293 (495)
                      ++|++++|.. ..+.   +.++++|+.|++++|. ..+..-. ..+++|+.|+++++....   ..++.+++|+.|++++
T Consensus       126 ~~L~L~~n~l-~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~~l~~L~~L~l~~  201 (597)
T 3oja_B          126 TVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSY  201 (597)
T ss_dssp             CEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB---CCGGGCTTCSEEECCS
T ss_pred             CEEEeeCCCC-CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC---cChhhhhhhhhhhccc
Confidence            9999998864 3332   3467889999998885 1111111 246788888888544322   2356788888888888


Q ss_pred             cccChHHHHHHhhcCCCCcEEEecCCCCCccccccccccceEEeccCCCccEEe-ccCCccceeeecccccc----eEee
Q 011021          294 VYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVID-VDAPNLLLFTYEFNPIP----IISI  368 (495)
Q Consensus       294 ~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~~~~~~L~~L~l~~c~~l~~l~-~~~p~L~~l~~~~~~~~----~~~~  368 (495)
                      +.++.      +...++|+.|++++|..........++|+.|.+.++.--..-. ..+++|+.++++++.+.    ..+.
T Consensus       202 n~l~~------l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  275 (597)
T 3oja_B          202 NLLST------LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFV  275 (597)
T ss_dssp             SCCSE------EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             Ccccc------ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence            87765      2345688888888874322222234678888887764221111 23788888888887753    3455


Q ss_pred             cCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCCCccHHH
Q 011021          369 NVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYET  448 (495)
Q Consensus       369 ~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~  448 (495)
                      ++++|+.|+++.+.      +..++.....+++|+.|+++.+....+  |..+..+     ++|+.|++++|+-....  
T Consensus       276 ~l~~L~~L~Ls~N~------l~~l~~~~~~l~~L~~L~Ls~N~l~~i--~~~~~~l-----~~L~~L~L~~N~l~~~~--  340 (597)
T 3oja_B          276 KMQRLERLYISNNR------LVALNLYGQPIPTLKVLDLSHNHLLHV--ERNQPQF-----DRLENLYLDHNSIVTLK--  340 (597)
T ss_dssp             TCSSCCEEECTTSC------CCEEECSSSCCTTCCEEECCSSCCCCC--GGGHHHH-----TTCSEEECCSSCCCCCC--
T ss_pred             CccCCCEEECCCCC------CCCCCcccccCCCCcEEECCCCCCCcc--CcccccC-----CCCCEEECCCCCCCCcC--
Confidence            67888888885332      334455567788899777754444444  7777777     88999999988733221  


Q ss_pred             HHHHHhhhccCCeeEEeeccc
Q 011021          449 LLDCVFWICHPRTLRVNVMFE  469 (495)
Q Consensus       449 l~~~l~~~~~l~~l~i~~~~~  469 (495)
                          +-.+++|++|.+.++.+
T Consensus       341 ----~~~~~~L~~L~l~~N~~  357 (597)
T 3oja_B          341 ----LSTHHTLKNLTLSHNDW  357 (597)
T ss_dssp             ----CCTTCCCSEEECCSSCE
T ss_pred             ----hhhcCCCCEEEeeCCCC
Confidence                23457889999887633

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.55  E-value=4e-14  Score=148.46  Aligned_cols=268  Identities=17%  Similarity=0.052  Sum_probs=185.9

Q ss_pred             cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEE
Q 011021          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L  221 (495)
                      .+++.++  +...  .-..+|..+.  ++|++|++++|.+...+.  .+++|++|+|++|.++.  ++   ..+++|++|
T Consensus        40 ~~l~~L~--ls~n--~L~~lp~~l~--~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~--lp---~~l~~L~~L  106 (622)
T 3g06_A           40 NGNAVLN--VGES--GLTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--LP---VLPPGLLEL  106 (622)
T ss_dssp             HCCCEEE--CCSS--CCSCCCSCCC--TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSC--CC---CCCTTCCEE
T ss_pred             CCCcEEE--ecCC--CcCccChhhC--CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCc--CC---CCCCCCCEE
Confidence            4677777  5432  2347777665  789999999998875433  68999999999998842  22   268999999


Q ss_pred             EEEecCCCcceeecCCCCccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHH
Q 011021          222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEF  301 (495)
Q Consensus       222 ~L~~c~~l~~~~i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  301 (495)
                      ++++|.. ..+.. .+++|+.|++.+|.  +..+....++|++|+++.+.... .+   ..+++|+.|+++++.++.   
T Consensus       107 ~Ls~N~l-~~l~~-~l~~L~~L~L~~N~--l~~lp~~l~~L~~L~Ls~N~l~~-l~---~~~~~L~~L~L~~N~l~~---  175 (622)
T 3g06_A          107 SIFSNPL-THLPA-LPSGLCKLWIFGNQ--LTSLPVLPPGLQELSVSDNQLAS-LP---ALPSELCKLWAYNNQLTS---  175 (622)
T ss_dssp             EECSCCC-CCCCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC---
T ss_pred             ECcCCcC-CCCCC-CCCCcCEEECCCCC--CCcCCCCCCCCCEEECcCCcCCC-cC---CccCCCCEEECCCCCCCC---
Confidence            9998864 33222 46899999999885  33344456899999998554422 11   246789999999888776   


Q ss_pred             HHHhhcCCCCcEEEecCCCCCccccccccccceEEeccCCCccEEeccCCccceeeecccccc-eEeecCCCCceEEEEE
Q 011021          302 NHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIP-IISINVPCPWKVSFVC  380 (495)
Q Consensus       302 ~~l~~~~~~L~~L~L~~~~~~~~i~~~~~~L~~L~l~~c~~l~~l~~~~p~L~~l~~~~~~~~-~~~~~~~~L~~l~i~~  380 (495)
                        +...+++|+.|++++|. +..++...++|+.|.+.++. +..+.-..++|++++++++.+. +. ..+++|+.|+++.
T Consensus       176 --l~~~~~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N~L~~lp-~~l~~L~~L~Ls~  250 (622)
T 3g06_A          176 --LPMLPSGLQELSVSDNQ-LASLPTLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLTSLP-VLPSELKELMVSG  250 (622)
T ss_dssp             --CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCS
T ss_pred             --CcccCCCCcEEECCCCC-CCCCCCccchhhEEECcCCc-ccccCCCCCCCCEEEccCCccCcCC-CCCCcCcEEECCC
Confidence              12567899999999874 44455556788888887763 4444444678888888888755 22 4568899999864


Q ss_pred             ecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCCCccHHHHHHHHh
Q 011021          381 KGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDCVF  454 (495)
Q Consensus       381 ~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l~  454 (495)
                      +.      +..++.   .+++|+.|+++.+....+  |..+..+     ++|+.|++++|+-.+..+..+..+.
T Consensus       251 N~------L~~lp~---~~~~L~~L~Ls~N~L~~l--p~~l~~l-----~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          251 NR------LTSLPM---LPSGLLSLSVYRNQLTRL--PESLIHL-----SSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             SC------CSCCCC---CCTTCCEEECCSSCCCSC--CGGGGGS-----CTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             CC------CCcCCc---ccccCcEEeCCCCCCCcC--CHHHhhc-----cccCEEEecCCCCCCcCHHHHHhcc
Confidence            43      333444   567888777654444433  7778777     8899999999886665555555444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.55  E-value=1.1e-14  Score=159.57  Aligned_cols=136  Identities=11%  Similarity=-0.086  Sum_probs=62.7

Q ss_pred             CcccccCCcceEEEEeccccCC---CCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcc----eee
Q 011021          162 PQAIFSANSVTNLRLVWCRLEQ---PFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH----LCV  234 (495)
Q Consensus       162 p~~l~~~~~L~~L~L~~c~l~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~----~~i  234 (495)
                      |..+..+++|++|+|++|....   +..+.++++|++|+|++|.+... .+..+.++++|++|++++|...+.    ..+
T Consensus        41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  119 (844)
T 3j0a_A           41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYF  119 (844)
T ss_dssp             SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred             hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc-CHhHccCCcccCEeeCcCCCCCcccccCccc
Confidence            3444555666666666653211   11345566666666666655211 112244566666666666543221    113


Q ss_pred             cCCCCccEEEecccc-ccceE--EEEeCCcceEEEEeecCCCCceeEEeecC--CCccEEEeeccccCh
Q 011021          235 SKASKLKIMEIRSFS-EEIEI--VEISVPSLQQLTLLFYGARRPRVVEVARS--PHLKKLDLVSVYFAD  298 (495)
Q Consensus       235 ~~l~~L~~L~i~~c~-~~l~~--~~~~~p~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~  298 (495)
                      .++++|+.|++++|. .....  .-..+++|++|+++.+......+..++.+  ++|+.|+++++.+..
T Consensus       120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~  188 (844)
T 3j0a_A          120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS  188 (844)
T ss_dssp             SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCC
T ss_pred             cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccc
Confidence            445566666666554 11100  01134556666665333222222222233  556666665555443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.53  E-value=5.2e-14  Score=146.71  Aligned_cols=307  Identities=15%  Similarity=0.062  Sum_probs=181.3

Q ss_pred             cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCcc
Q 011021          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  219 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  219 (495)
                      ..+++|+  +..+.. ....|..+..+++|++|++++|.+...+  .+.++++|++|+|+++.+++.. ...+.++++|+
T Consensus        26 ~~L~~L~--Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~  101 (549)
T 2z81_A           26 AAMKSLD--LSFNKI-TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS-SSWFGPLSSLK  101 (549)
T ss_dssp             TTCCEEE--CCSSCC-CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC-HHHHTTCTTCC
T ss_pred             CCccEEE--CcCCcc-CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC-HHHhccCCCCc
Confidence            4677777  543321 1223456677899999999998875543  4678899999999999884322 23467899999


Q ss_pred             EEEEEecCCCc-c--eeecCCCCccEEEeccccccceEEE----EeCCcceEEEEeecCCCCceeEEeecCCCccEEEee
Q 011021          220 DLCFSNCWGLK-H--LCVSKASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLV  292 (495)
Q Consensus       220 ~L~L~~c~~l~-~--~~i~~l~~L~~L~i~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  292 (495)
                      +|++++|.... .  ..+.++++|+.|++.+|. ....+.    ..+++|+.|+++++......+..++.+++|++|+++
T Consensus       102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  180 (549)
T 2z81_A          102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE-TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH  180 (549)
T ss_dssp             EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred             EEECCCCcccccchhhhhhccCCccEEECCCCc-cccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence            99999886432 1  234567899999998875 233332    146789999998665544344456678888889988


Q ss_pred             ccccChHHHHHHhhcCCCCcEEEecCCCCCcc------ccccccccceEEeccCC-----------------CccEEe--
Q 011021          293 SVYFADNEFNHLISKFPSLEDLFVTRCCLPGK------IKISSNQLKNLLFRSCK-----------------YLKVID--  347 (495)
Q Consensus       293 ~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~------i~~~~~~L~~L~l~~c~-----------------~l~~l~--  347 (495)
                      ++.... ....+...+++|+.|++++|...+.      +....++|+.|.+.++.                 +++.+.  
T Consensus       181 ~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~  259 (549)
T 2z81_A          181 LSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD  259 (549)
T ss_dssp             CSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEE
T ss_pred             cCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccc
Confidence            877654 2233345688899999988743221      11224556666555432                 111111  


Q ss_pred             ------------------ccCCccceeeecccccc-e-E-------eecCCCCceEEEEEecccchhhhcchHHH-hccC
Q 011021          348 ------------------VDAPNLLLFTYEFNPIP-I-I-------SINVPCPWKVSFVCKGVLNTHWYLKLKKF-LGVS  399 (495)
Q Consensus       348 ------------------~~~p~L~~l~~~~~~~~-~-~-------~~~~~~L~~l~i~~~~~~~~~~~~~l~~~-l~~l  399 (495)
                                        -..++++.+.+.+..++ . .       ....++|+.++++.+.      +..+|.. ++++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~------l~~ip~~~~~~l  333 (549)
T 2z81_A          260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK------VFLVPCSFSQHL  333 (549)
T ss_dssp             SCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC------CCCCCHHHHHHC
T ss_pred             cccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc------cccCCHHHHhcC
Confidence                              11334444444443322 0 0       1123466777775332      2234433 3678


Q ss_pred             CccceEEEEEEecceeccc---ccccccCCCCCCccceeEEEecCCCccHHHHHHHHhhhccCCeeEEeec
Q 011021          400 KQIESLKLSLYSTKVLYNL---DELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVM  467 (495)
Q Consensus       400 ~~L~~L~l~~~~~~~~~~p---~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l~~~~~l~~l~i~~~  467 (495)
                      ++|+.|+++....... .|   ..++..     ++|+.|++++|.-.. .+.....+-.+++|++|.+.++
T Consensus       334 ~~L~~L~Ls~N~l~~~-~~~~~~~~~~l-----~~L~~L~Ls~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N  397 (549)
T 2z81_A          334 KSLEFLDLSENLMVEE-YLKNSACKGAW-----PSLQTLVLSQNHLRS-MQKTGEILLTLKNLTSLDISRN  397 (549)
T ss_dssp             TTCCEEECCSSCCCHH-HHHHHTCTTSS-----TTCCEEECTTSCCCC-HHHHHHHGGGCTTCCEEECTTC
T ss_pred             ccccEEEccCCccccc-cccchhhhhcc-----ccCcEEEccCCcccc-cccchhhhhcCCCCCEEECCCC
Confidence            8888666643322211 12   223444     778888888775322 2221123445678888888777

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.53  E-value=1.2e-14  Score=147.80  Aligned_cols=12  Identities=8%  Similarity=0.086  Sum_probs=6.8

Q ss_pred             CccceeEEEecC
Q 011021          430 LQVENLELHTNV  441 (495)
Q Consensus       430 ~~L~~L~l~~~~  441 (495)
                      ++|+.|++++|.
T Consensus       339 ~~L~~L~l~~N~  350 (457)
T 3bz5_A          339 TKLKSLSCVNAH  350 (457)
T ss_dssp             TTCSEEECCSSC
T ss_pred             CcCcEEECCCCC
Confidence            555666555554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.53  E-value=9.9e-16  Score=156.15  Aligned_cols=345  Identities=17%  Similarity=0.084  Sum_probs=213.6

Q ss_pred             cccceEEEEEeccCCCCChhHHHHHHHHHHH--cCceEeEEEeecCCCcccccCcccccCC----cceEEEEeccccCCC
Q 011021          111 FCIQKFRLFLTFLDVKGSAPIVDRWIRLAVE--NGVRELDFENITDENTVYTLPQAIFSAN----SVTNLRLVWCRLEQP  184 (495)
Q Consensus       111 ~~l~~l~l~~~~~~~~~~~~~~~~wi~~a~~--~~l~~L~l~l~~~~~~~~~lp~~l~~~~----~L~~L~L~~c~l~~~  184 (495)
                      ..++.+.+....    ...... ..+..+..  +++++|+  +..+......+......++    +|++|++++|.+...
T Consensus        28 ~~L~~L~L~~~~----l~~~~~-~~l~~~l~~~~~L~~L~--Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~  100 (461)
T 1z7x_W           28 QQCQVVRLDDCG----LTEARC-KDISSALRVNPALAELN--LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA  100 (461)
T ss_dssp             TTCSEEEEESSC----CCHHHH-HHHHHHHHTCTTCCEEE--CTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGG
T ss_pred             CCccEEEccCCC----CCHHHH-HHHHHHHHhCCCcCEEe--CCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHH
Confidence            357777777432    122112 22333322  6899998  6543322211111111233    799999999987742


Q ss_pred             -----C-CccCCCCCcEEEeeeEeeChHHHHHHHh----cCCCccEEEEEecCCCcc------eeecCCCCccEEEeccc
Q 011021          185 -----F-DSIMLCSLKKLTLERVCLDEQMVQKLAS----ECPLLEDLCFSNCWGLKH------LCVSKASKLKIMEIRSF  248 (495)
Q Consensus       185 -----~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~----~~p~Le~L~L~~c~~l~~------~~i~~l~~L~~L~i~~c  248 (495)
                           + ....+++|++|+++++.+++.....+..    ..+.|++|++++|..-..      ..+..+++|++|++++|
T Consensus       101 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n  180 (461)
T 1z7x_W          101 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN  180 (461)
T ss_dssp             GHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred             HHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence                 1 4568999999999999996665554443    356899999999964321      12235689999999988


Q ss_pred             c-c--cceEEEE----eCCcceEEEEeecCCCCc----eeEEeecCCCccEEEeeccccChHHHHHHh----hcCCCCcE
Q 011021          249 S-E--EIEIVEI----SVPSLQQLTLLFYGARRP----RVVEVARSPHLKKLDLVSVYFADNEFNHLI----SKFPSLED  313 (495)
Q Consensus       249 ~-~--~l~~~~~----~~p~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~----~~~~~L~~  313 (495)
                      . .  ....+.-    ..++|++|+++++.....    ....+..+++|++|+++++.+++.....+.    ..+++|+.
T Consensus       181 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~  260 (461)
T 1z7x_W          181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT  260 (461)
T ss_dssp             BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred             CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceE
Confidence            6 1  1111111    245999999986544321    233345789999999999998876554433    35899999


Q ss_pred             EEecCCCCCcc-----ccc---cccccceEEeccCCCcc----EE----eccCCccceeeecccccc--------eEeec
Q 011021          314 LFVTRCCLPGK-----IKI---SSNQLKNLLFRSCKYLK----VI----DVDAPNLLLFTYEFNPIP--------IISIN  369 (495)
Q Consensus       314 L~L~~~~~~~~-----i~~---~~~~L~~L~l~~c~~l~----~l----~~~~p~L~~l~~~~~~~~--------~~~~~  369 (495)
                      |++++|. +..     +..   .+++|+.|+++++.--.    .+    ....++|++++++++.+.        ..+..
T Consensus       261 L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  339 (461)
T 1z7x_W          261 LWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ  339 (461)
T ss_dssp             EECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH
T ss_pred             EECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhh
Confidence            9999983 332     222   36789999998874210    11    112368999999887743        12345


Q ss_pred             CCCCceEEEEEecccchhhhcchHHHhcc-CCccceEEEEEEeccee---cccccccccCCCCCCccceeEEEecCCCcc
Q 011021          370 VPCPWKVSFVCKGVLNTHWYLKLKKFLGV-SKQIESLKLSLYSTKVL---YNLDELSECSPSLPLQVENLELHTNVPLSD  445 (495)
Q Consensus       370 ~~~L~~l~i~~~~~~~~~~~~~l~~~l~~-l~~L~~L~l~~~~~~~~---~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~  445 (495)
                      +++|++|+++.+...... ...+...+.. .++|++|+++.+.....   ..+..+...     ++|++|++++|+-...
T Consensus       340 ~~~L~~L~Ls~n~i~~~~-~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-----~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          340 NRFLLELQISNNRLEDAG-VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN-----HSLRELDLSNNCLGDA  413 (461)
T ss_dssp             CSSCCEEECCSSBCHHHH-HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC-----CCCCEEECCSSSCCHH
T ss_pred             CCCccEEEccCCcccccc-HHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhC-----CCccEEECCCCCCCHH
Confidence            689999999755432221 2233344443 77999887744333310   225566666     8999999999974433


Q ss_pred             -HHHHHHHHhh-hccCCeeEEeeccc
Q 011021          446 -YETLLDCVFW-ICHPRTLRVNVMFE  469 (495)
Q Consensus       446 -~~~l~~~l~~-~~~l~~l~i~~~~~  469 (495)
                       ...+...+.. .+.+++|.+.+...
T Consensus       414 ~~~~l~~~l~~~~~~L~~L~~~~~~~  439 (461)
T 1z7x_W          414 GILQLVESVRQPGCLLEQLVLYDIYW  439 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred             HHHHHHHHhccCCcchhheeeccccc
Confidence             3344444433 34699999887743

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.53  E-value=3.4e-14  Score=144.27  Aligned_cols=195  Identities=16%  Similarity=0.031  Sum_probs=113.3

Q ss_pred             CcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEeccc
Q 011021          169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSF  248 (495)
Q Consensus       169 ~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c  248 (495)
                      ++|++|++++|.+...+.+.++++|++|+++++.++.  ++   ...+.|++|++++|...+-..+.++++|+.|++.+|
T Consensus       131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~--lp---~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK--LP---DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN  205 (454)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc--cC---CCcccccEEECcCCcCCcCccccCCCCCCEEECCCC
Confidence            5677777777766554456667777777777776632  11   123467777777775432223456777888887777


Q ss_pred             cccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcccccc
Q 011021          249 SEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKIS  328 (495)
Q Consensus       249 ~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~~~  328 (495)
                      .  +..+....++|++|+++++... ..+ .++.+++|+.|+++++.++.     +....++|+.|++++|. +..++..
T Consensus       206 ~--l~~l~~~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-----l~~~~~~L~~L~l~~N~-l~~l~~~  275 (454)
T 1jl5_A          206 S--LKKLPDLPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-----LPDLPPSLEALNVRDNY-LTDLPEL  275 (454)
T ss_dssp             C--CSSCCCCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-----CCSCCTTCCEEECCSSC-CSCCCCC
T ss_pred             c--CCcCCCCcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-----ccccccccCEEECCCCc-ccccCcc
Confidence            4  2222223457888888754433 233 36677888888888777654     11234678888887764 3334444


Q ss_pred             ccccceEEeccCCCccEEeccCCccceeeecccccceEeecCCCCceEEEE
Q 011021          329 SNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFV  379 (495)
Q Consensus       329 ~~~L~~L~l~~c~~l~~l~~~~p~L~~l~~~~~~~~~~~~~~~~L~~l~i~  379 (495)
                      .++|+.|+++++. +..+.--.++|+.++++++.+.......++|+.++++
T Consensus       276 ~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls  325 (454)
T 1jl5_A          276 PQSLTFLDVSENI-FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVS  325 (454)
T ss_dssp             CTTCCEEECCSSC-CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECC
T ss_pred             cCcCCEEECcCCc-cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECC
Confidence            5677777777653 3333222356666666665543111112366666664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.50  E-value=2.1e-14  Score=153.77  Aligned_cols=294  Identities=16%  Similarity=0.089  Sum_probs=131.7

Q ss_pred             cccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcc--eeecCCCCc
Q 011021          165 IFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKL  240 (495)
Q Consensus       165 l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~--~~i~~l~~L  240 (495)
                      +..+++|++|++++|.+....  .+.++++|++|+|+++.++.- ....+.++++|++|++++|.....  ..+.++++|
T Consensus        45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  123 (680)
T 1ziw_A           45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL  123 (680)
T ss_dssp             GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred             HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCcc-ChhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence            444666666666666554332  344566666666666655210 111244566666666666643211  123355666


Q ss_pred             cEEEecccc-ccceE-EEEeCCcceEEEEeecCCCCceeEEe--ecCCCccEEEeeccccChHHHHHHhh----------
Q 011021          241 KIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEV--ARSPHLKKLDLVSVYFADNEFNHLIS----------  306 (495)
Q Consensus       241 ~~L~i~~c~-~~l~~-~~~~~p~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~----------  306 (495)
                      ++|++.+|. ..... ....+++|++|+++.+......+..+  ..+++|+.|+++++.+++.... .+.          
T Consensus       124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l  202 (680)
T 1ziw_A          124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG-CFHAIGRLFGLFL  202 (680)
T ss_dssp             CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT-GGGGSSEECEEEC
T ss_pred             CEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChh-hhhhhhhhhhhhc
Confidence            666666654 11110 01135566666666333222111111  1345666666665544321000 001          


Q ss_pred             -----------------cCCCCcEEEecCCCCCcccccc---c--cccceEEeccCCCccEEe----ccCCccceeeecc
Q 011021          307 -----------------KFPSLEDLFVTRCCLPGKIKIS---S--NQLKNLLFRSCKYLKVID----VDAPNLLLFTYEF  360 (495)
Q Consensus       307 -----------------~~~~L~~L~L~~~~~~~~i~~~---~--~~L~~L~l~~c~~l~~l~----~~~p~L~~l~~~~  360 (495)
                                       ..++|+.|++.+|...+..+..   .  ++|+.|+++++. +..+.    -.+++|+++++++
T Consensus       203 ~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~  281 (680)
T 1ziw_A          203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEY  281 (680)
T ss_dssp             TTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred             cccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC-cCccCcccccCcccccEeeCCC
Confidence                             1244555555554222111111   1  236666665553 22221    1256666666666


Q ss_pred             cccc----eEeecCCCCceEEEEEecccchhhhcchH----HHhccCCccceEEEEEEecceecccccccccCCCCCCcc
Q 011021          361 NPIP----IISINVPCPWKVSFVCKGVLNTHWYLKLK----KFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQV  432 (495)
Q Consensus       361 ~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~l~----~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L  432 (495)
                      +.+.    ..+.++++|+.++++.+...+......++    ..++++++|+.|+++...... ..+..+..+     ++|
T Consensus       282 n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l-----~~L  355 (680)
T 1ziw_A          282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGL-----INL  355 (680)
T ss_dssp             CCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC-CCTTTTTTC-----TTC
T ss_pred             CccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC-CChhHhccc-----cCC
Confidence            5532    23345566666666322111110001111    145667777755553222221 234445555     677


Q ss_pred             ceeEEEecC-CCccHHHHHHHHhhhccCCeeEEeec
Q 011021          433 ENLELHTNV-PLSDYETLLDCVFWICHPRTLRVNVM  467 (495)
Q Consensus       433 ~~L~l~~~~-~~~~~~~l~~~l~~~~~l~~l~i~~~  467 (495)
                      ++|++++|. ....++.....-+..+++++|.+..+
T Consensus       356 ~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n  391 (680)
T 1ziw_A          356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN  391 (680)
T ss_dssp             CEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS
T ss_pred             cEEECCCCchhhhhcchhhhcccccCcCceEECCCC
Confidence            777777654 11111110001112246777777665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.49  E-value=2.8e-14  Score=144.93  Aligned_cols=239  Identities=14%  Similarity=0.066  Sum_probs=141.4

Q ss_pred             cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEE
Q 011021          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L  221 (495)
                      .++++|+  +..+...  .+|  +..+++|++|++++|.+...+ ...+++|++|+++++.++.-  +  +.+++.|++|
T Consensus        85 ~~L~~L~--Ls~N~l~--~~~--~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l--~--l~~l~~L~~L  153 (457)
T 3bz5_A           85 TNLTYLA--CDSNKLT--NLD--VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEI--D--VSHNTQLTEL  153 (457)
T ss_dssp             TTCSEEE--CCSSCCS--CCC--CTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCC--C--CTTCTTCCEE
T ss_pred             CCCCEEE--CcCCCCc--eee--cCCCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCcccee--c--cccCCcCCEE
Confidence            4666666  4432222  222  455677777777777765542 56777777777777776432  1  5677777777


Q ss_pred             EEEecCCCcceeecCCCCccEEEeccccccceEEEE-eCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHH
Q 011021          222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEI-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE  300 (495)
Q Consensus       222 ~L~~c~~l~~~~i~~l~~L~~L~i~~c~~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  300 (495)
                      ++.+|..++.+.+..+++|+.|++++|.  +..+.+ .+++|+.|+++.+....   ..++.+++|+.|+++++.+++- 
T Consensus       154 ~l~~n~~~~~~~~~~l~~L~~L~ls~n~--l~~l~l~~l~~L~~L~l~~N~l~~---~~l~~l~~L~~L~Ls~N~l~~i-  227 (457)
T 3bz5_A          154 DCHLNKKITKLDVTPQTQLTTLDCSFNK--ITELDVSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLTEI-  227 (457)
T ss_dssp             ECTTCSCCCCCCCTTCTTCCEEECCSSC--CCCCCCTTCTTCCEEECCSSCCSC---CCCTTCTTCSEEECCSSCCSCC-
T ss_pred             ECCCCCcccccccccCCcCCEEECCCCc--cceeccccCCCCCEEECcCCcCCe---eccccCCCCCEEECcCCccccc-
Confidence            7777766666666667778888777774  222223 45677777777444322   1366777888888887777661 


Q ss_pred             HHHHhhcCCCCcEEEecCCCCCcccccccc----------ccceEEeccCCCccEEecc-CCccceeeeccccc------
Q 011021          301 FNHLISKFPSLEDLFVTRCCLPGKIKISSN----------QLKNLLFRSCKYLKVIDVD-APNLLLFTYEFNPI------  363 (495)
Q Consensus       301 ~~~l~~~~~~L~~L~L~~~~~~~~i~~~~~----------~L~~L~l~~c~~l~~l~~~-~p~L~~l~~~~~~~------  363 (495)
                       .  +..+++|+.|++++|...+.....++          +|+.|++..|..+..+... +++|+.++++++..      
T Consensus       228 -p--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~  304 (457)
T 3bz5_A          228 -D--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDC  304 (457)
T ss_dssp             -C--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEEC
T ss_pred             -C--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceecc
Confidence             1  45677888888877632221111233          3344445555544444433 56677777666541      


Q ss_pred             -----c-eEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEE
Q 011021          364 -----P-IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLS  408 (495)
Q Consensus       364 -----~-~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~  408 (495)
                           . ..+.+.++|+.++++.+.      +..++  ++++++|+.|+++
T Consensus       305 ~~~~L~~L~l~~~~~L~~L~L~~N~------l~~l~--l~~l~~L~~L~l~  347 (457)
T 3bz5_A          305 QAAGITELDLSQNPKLVYLYLNNTE------LTELD--VSHNTKLKSLSCV  347 (457)
T ss_dssp             TTCCCSCCCCTTCTTCCEEECTTCC------CSCCC--CTTCTTCSEEECC
T ss_pred             CCCcceEechhhcccCCEEECCCCc------ccccc--cccCCcCcEEECC
Confidence                 1 123345677777774332      22232  7788888877663

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.49  E-value=2.6e-14  Score=153.02  Aligned_cols=65  Identities=12%  Similarity=0.116  Sum_probs=31.7

Q ss_pred             HhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCCCccHHHHHHHHhhhccCCeeEEeec
Q 011021          395 FLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVM  467 (495)
Q Consensus       395 ~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l~~~~~l~~l~i~~~  467 (495)
                      .++++++|+.|+++......+ .+..+..+     ++|+.|++++|.-....+....  ..+++|++|.+.+.
T Consensus       555 ~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l-----~~L~~L~L~~N~l~~~~~~~~~--~~~~~L~~l~l~~N  619 (680)
T 1ziw_A          555 VFKDLFELKIIDLGLNNLNTL-PASVFNNQ-----VSLKSLNLQKNLITSVEKKVFG--PAFRNLTELDMRFN  619 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCCCC-CTTTTTTC-----TTCCEEECTTSCCCBCCHHHHH--HHHTTCSEEECTTC
T ss_pred             HcccccCcceeECCCCCCCcC-CHhHhCCC-----CCCCEEECCCCcCCccChhHhc--ccccccCEEEccCC
Confidence            356666666555532222222 22233444     6677777776653333322211  02456777777654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.48  E-value=4.2e-14  Score=146.48  Aligned_cols=132  Identities=17%  Similarity=0.095  Sum_probs=97.9

Q ss_pred             ccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeec
Q 011021          158 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVS  235 (495)
Q Consensus       158 ~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~  235 (495)
                      -..+|..+.  ++|++|++++|.+...+  .+.++++|++|+|+++.+++.. +..+.++++|++|++++|.. ..++..
T Consensus        12 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l-~~lp~~   87 (520)
T 2z7x_B           12 LIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD-ISVFKFNQELEYLDLSHNKL-VKISCH   87 (520)
T ss_dssp             CSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEE-GGGGTTCTTCCEEECCSSCC-CEEECC
T ss_pred             ccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcC-hHHhhcccCCCEEecCCCce-eecCcc
Confidence            346777665  89999999999987654  5678999999999999884321 23467899999999999964 444444


Q ss_pred             CCCCccEEEecccc-ccce--EEEEeCCcceEEEEeecCCCCceeEEeecCCCc--cEEEeecccc
Q 011021          236 KASKLKIMEIRSFS-EEIE--IVEISVPSLQQLTLLFYGARRPRVVEVARSPHL--KKLDLVSVYF  296 (495)
Q Consensus       236 ~l~~L~~L~i~~c~-~~l~--~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~  296 (495)
                      .+++|++|++++|. ..+.  .....+++|++|+++++....   ..++.+++|  +.|+++++.+
T Consensus        88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred             ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence            78999999999986 2111  111257899999999655533   345677888  9999998876

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.48  E-value=7.3e-15  Score=143.21  Aligned_cols=203  Identities=19%  Similarity=0.291  Sum_probs=139.6

Q ss_pred             HHHHHHHHH-cCceEeEEEeecCCCcccccCcccccC--CcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHH
Q 011021          133 DRWIRLAVE-NGVRELDFENITDENTVYTLPQAIFSA--NSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMV  208 (495)
Q Consensus       133 ~~wi~~a~~-~~l~~L~l~l~~~~~~~~~lp~~l~~~--~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l  208 (495)
                      .+|-..+.. ...+.++  +......    |..+...  ++++.|+++++.+.... ....+++|++|+++++.+++..+
T Consensus        37 ~~W~~~~~~~~~~~~l~--l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~  110 (336)
T 2ast_B           37 KRWYRLASDESLWQTLD--LTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL  110 (336)
T ss_dssp             HHHHHHHTCSTTSSEEE--CTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHH
T ss_pred             HHHHHHhcCchhheeec--cccccCC----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHH
Confidence            456555543 2366777  4321111    3334444  88999999999876654 56689999999999999988878


Q ss_pred             HHHHhcCCCccEEEEEecCCCcc--eeecCCCCccEEEecccc--c--cceEEEEeCCcceEEEEeec-CCCCc-eeEEe
Q 011021          209 QKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS--E--EIEIVEISVPSLQQLTLLFY-GARRP-RVVEV  280 (495)
Q Consensus       209 ~~l~~~~p~Le~L~L~~c~~l~~--~~i~~l~~L~~L~i~~c~--~--~l~~~~~~~p~L~~L~l~~~-~~~~~-~~~~~  280 (495)
                      ...+.+||+|++|++++|.....  ..+..+++|++|++.+|.  .  .+..+...+++|++|+++++ ..... .+..+
T Consensus       111 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  190 (336)
T 2ast_B          111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV  190 (336)
T ss_dssp             HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH
T ss_pred             HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH
Confidence            88899999999999999964322  234468999999999984  1  12222235788999998865 33221 23345


Q ss_pred             ecCC-CccEEEeecc--ccChHHHHHHhhcCCCCcEEEecCCCCCccc-c---ccccccceEEeccCC
Q 011021          281 ARSP-HLKKLDLVSV--YFADNEFNHLISKFPSLEDLFVTRCCLPGKI-K---ISSNQLKNLLFRSCK  341 (495)
Q Consensus       281 ~~~~-~L~~L~l~~~--~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i-~---~~~~~L~~L~l~~c~  341 (495)
                      +.++ +|++|+++++  .+++..+...+..+++|+.|++++|..++.. .   ...++|+.|++.+|.
T Consensus       191 ~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          191 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence            6788 8999999888  5676666667778899999999888643321 1   134566666666664

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.48  E-value=7.2e-14  Score=153.06  Aligned_cols=155  Identities=15%  Similarity=0.035  Sum_probs=106.4

Q ss_pred             cCceEeEEEeecCCCccccc-CcccccCCcceEEEEeccccCCC-C-CccCCCCCcEEEeeeEeeChHHHH-HHHhcCCC
Q 011021          142 NGVRELDFENITDENTVYTL-PQAIFSANSVTNLRLVWCRLEQP-F-DSIMLCSLKKLTLERVCLDEQMVQ-KLASECPL  217 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~c~l~~~-~-~~~~l~~L~~L~L~~~~~~~~~l~-~l~~~~p~  217 (495)
                      .+++.|+  +..+.. ...+ |..+..+++|++|+|++|.+... + .+.++++|++|+|++|.+++.... ..+.++++
T Consensus        48 ~~L~~Ld--Ls~n~~-~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~  124 (844)
T 3j0a_A           48 EQLQLLE--LGSQYT-PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA  124 (844)
T ss_dssp             CSCSEEE--ECTTCC-CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSS
T ss_pred             ccCeEEe--CCCCCC-ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCC
Confidence            4678888  543322 2344 56677789999999999987643 2 678899999999999988532222 23568999


Q ss_pred             ccEEEEEecCCCcc---eeecCCCCccEEEecccc-ccceEEEE---eCCcceEEEEeecCCCCceeEEeecCCC-----
Q 011021          218 LEDLCFSNCWGLKH---LCVSKASKLKIMEIRSFS-EEIEIVEI---SVPSLQQLTLLFYGARRPRVVEVARSPH-----  285 (495)
Q Consensus       218 Le~L~L~~c~~l~~---~~i~~l~~L~~L~i~~c~-~~l~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~~-----  285 (495)
                      |++|++++|...+.   ..+.++++|+.|++.++. .....-.+   ..++|+.|+++.+......+..++.+++     
T Consensus       125 L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~  204 (844)
T 3j0a_A          125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM  204 (844)
T ss_dssp             CCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTC
T ss_pred             CCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccC
Confidence            99999999875332   135678999999999875 11111111   1278999999866555545555555655     


Q ss_pred             -ccEEEeeccccChH
Q 011021          286 -LKKLDLVSVYFADN  299 (495)
Q Consensus       286 -L~~L~l~~~~~~~~  299 (495)
                       |+.|+++++.++..
T Consensus       205 ~L~~L~Ls~n~l~~~  219 (844)
T 3j0a_A          205 VLEILDVSGNGWTVD  219 (844)
T ss_dssp             CBSEEBCSSCCSSTT
T ss_pred             ceeEEecCCCcCchh
Confidence             99999998876553

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.48  E-value=3.5e-15  Score=156.30  Aligned_cols=165  Identities=15%  Similarity=0.074  Sum_probs=94.4

Q ss_pred             CccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcccc-ccccccceEEeccCCCccEE---e---ccCCccceee
Q 011021          285 HLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK-ISSNQLKNLLFRSCKYLKVI---D---VDAPNLLLFT  357 (495)
Q Consensus       285 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~-~~~~~L~~L~l~~c~~l~~l---~---~~~p~L~~l~  357 (495)
                      +|++|+++++.+..  +.  ...+++|+.|++.+|.....+. ..+++|+.|+++++.- ..+   .   ..+++|++++
T Consensus       305 ~L~~L~l~~n~~~~--l~--~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~  379 (570)
T 2z63_A          305 GWQHLELVNCKFGQ--FP--TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL-SFKGCCSQSDFGTTSLKYLD  379 (570)
T ss_dssp             CCSEEEEESCBCSS--CC--BCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCC-BEEEEEEHHHHTCSCCCEEE
T ss_pred             CccEEeeccCcccc--cC--cccccccCEEeCcCCccccccccccCCCCCEEeCcCCcc-CccccccccccccCccCEEE
Confidence            45555555444431  00  1245666666666654333222 2456777777766542 222   1   2367888888


Q ss_pred             ecccccc---eEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccce
Q 011021          358 YEFNPIP---IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVEN  434 (495)
Q Consensus       358 ~~~~~~~---~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~  434 (495)
                      ++++.+.   ..+..+++|+.|+++.+.....    .....+.++++|+.|+++.+.... ..|..+..+     ++|+.
T Consensus       380 l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l-----~~L~~  449 (570)
T 2z63_A          380 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM----SEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGL-----SSLEV  449 (570)
T ss_dssp             CCSCSEEEEEEEEETCTTCCEEECTTSEEESC----TTSCTTTTCTTCCEEECTTSCCEE-CCTTTTTTC-----TTCCE
T ss_pred             CCCCccccccccccccCCCCEEEccCCccccc----cchhhhhcCCCCCEEeCcCCcccc-cchhhhhcC-----CcCcE
Confidence            8877643   3366788888888843322111    012356788889977664332222 235566666     88999


Q ss_pred             eEEEecCCC-ccHHHHHHHHhhhccCCeeEEeec
Q 011021          435 LELHTNVPL-SDYETLLDCVFWICHPRTLRVNVM  467 (495)
Q Consensus       435 L~l~~~~~~-~~~~~l~~~l~~~~~l~~l~i~~~  467 (495)
                      |++.+|.-. ...+   ..+-.+++|++|.+.+|
T Consensus       450 L~l~~n~l~~~~~p---~~~~~l~~L~~L~l~~n  480 (570)
T 2z63_A          450 LKMAGNSFQENFLP---DIFTELRNLTFLDLSQC  480 (570)
T ss_dssp             EECTTCEEGGGEEC---SCCTTCTTCCEEECTTS
T ss_pred             EECcCCcCccccch---hhhhcccCCCEEECCCC
Confidence            999887633 2233   33445678999999887

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.47  E-value=1.3e-13  Score=144.05  Aligned_cols=143  Identities=9%  Similarity=0.046  Sum_probs=66.5

Q ss_pred             hcCCCCcEEEecCCCCCcccc---ccccccceEEeccCCCccEEe------ccCCccceeeecccccc-----eEeecCC
Q 011021          306 SKFPSLEDLFVTRCCLPGKIK---ISSNQLKNLLFRSCKYLKVID------VDAPNLLLFTYEFNPIP-----IISINVP  371 (495)
Q Consensus       306 ~~~~~L~~L~L~~~~~~~~i~---~~~~~L~~L~l~~c~~l~~l~------~~~p~L~~l~~~~~~~~-----~~~~~~~  371 (495)
                      ..+++|+.|++++|...+.++   ...++|+.|.++++. ++.+.      -..++|+.++++++.+.     ..+..++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~  428 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE  428 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence            345666666666663332222   134566666666543 22211      23566666666665532     1234456


Q ss_pred             CCceEEEEEecccchhhhcchHHHhccC-CccceEEEEEEecceecccccccccCCCCCCccceeEEEecCCCccHHHHH
Q 011021          372 CPWKVSFVCKGVLNTHWYLKLKKFLGVS-KQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYETLL  450 (495)
Q Consensus       372 ~L~~l~i~~~~~~~~~~~~~l~~~l~~l-~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~  450 (495)
                      +|+.++++.+...+.     .+   ..+ ++|+.|+++.+....+  |..+..+     ++|+.|++++|.-. .++.- 
T Consensus       429 ~L~~L~l~~n~l~~~-----~~---~~l~~~L~~L~L~~N~l~~i--p~~~~~l-----~~L~~L~L~~N~l~-~l~~~-  491 (562)
T 3a79_B          429 SILVLNLSSNMLTGS-----VF---RCLPPKVKVLDLHNNRIMSI--PKDVTHL-----QALQELNVASNQLK-SVPDG-  491 (562)
T ss_dssp             TCCEEECCSSCCCGG-----GG---SSCCTTCSEEECCSSCCCCC--CTTTTSS-----CCCSEEECCSSCCC-CCCTT-
T ss_pred             cCCEEECCCCCCCcc-----hh---hhhcCcCCEEECCCCcCccc--ChhhcCC-----CCCCEEECCCCCCC-CCCHH-
Confidence            666666643332111     11   112 4566555533332222  5544444     56666666665422 12110 


Q ss_pred             HHHhhhccCCeeEEeec
Q 011021          451 DCVFWICHPRTLRVNVM  467 (495)
Q Consensus       451 ~~l~~~~~l~~l~i~~~  467 (495)
                       .+-.+++|++|.+.+.
T Consensus       492 -~~~~l~~L~~L~l~~N  507 (562)
T 3a79_B          492 -VFDRLTSLQYIWLHDN  507 (562)
T ss_dssp             -STTTCTTCCCEECCSC
T ss_pred             -HHhcCCCCCEEEecCC
Confidence             1223455666666554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.46  E-value=1.7e-13  Score=134.63  Aligned_cols=239  Identities=14%  Similarity=0.061  Sum_probs=125.6

Q ss_pred             ccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcc---eeecCCC
Q 011021          164 AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH---LCVSKAS  238 (495)
Q Consensus       164 ~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~---~~i~~l~  238 (495)
                      .+..+++|++|++++|.+....  .+.++++|++|+++++.++. .....+.++++|++|++++|....-   ..+.+++
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~  149 (353)
T 2z80_A           71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT  149 (353)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCT
T ss_pred             HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccCCEEECCCCCCcccCchhhhccCC
Confidence            4455666777777666654332  35566667777776666632 1122345666677776666643211   1233456


Q ss_pred             CccEEEeccccccceEEE----EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEE
Q 011021          239 KLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDL  314 (495)
Q Consensus       239 ~L~~L~i~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L  314 (495)
                      +|+.|++.+|. .+..+.    ..+++|+.|+++.+......+..++.+++|++|+++++.++. ........+++|+.|
T Consensus       150 ~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L  227 (353)
T 2z80_A          150 KLQILRVGNMD-TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECL  227 (353)
T ss_dssp             TCCEEEEEESS-SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT-HHHHHHHHTTTEEEE
T ss_pred             CCcEEECCCCc-cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc-chhhhhhhcccccEE
Confidence            66666666653 222221    134556666665443322222334455566666666555533 122223345566666


Q ss_pred             EecCCCCCccccccccccceEEeccCCCccEEeccCCccceeeecccccceEeecCCCCceEEEEEecccchhhhcchHH
Q 011021          315 FVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVCKGVLNTHWYLKLKK  394 (495)
Q Consensus       315 ~L~~~~~~~~i~~~~~~L~~L~l~~c~~l~~l~~~~p~L~~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~  394 (495)
                      ++++|...+ +.  ..              .+    +              .....+.++.+.+......+.. +..++.
T Consensus       228 ~L~~n~l~~-~~--~~--------------~l----~--------------~~~~~~~l~~l~L~~~~l~~~~-l~~l~~  271 (353)
T 2z80_A          228 ELRDTDLDT-FH--FS--------------EL----S--------------TGETNSLIKKFTFRNVKITDES-LFQVMK  271 (353)
T ss_dssp             EEESCBCTT-CC--CC--------------------------------------CCCCCCEEEEESCBCCHHH-HHHHHH
T ss_pred             ECCCCcccc-cc--cc--------------cc----c--------------cccccchhhccccccccccCcc-hhhhHH
Confidence            665542110 00  00              00    0              0012345666666533332222 456788


Q ss_pred             HhccCCccceEEEEEEecceeccccc-ccccCCCCCCccceeEEEecCCCccHHH
Q 011021          395 FLGVSKQIESLKLSLYSTKVLYNLDE-LSECSPSLPLQVENLELHTNVPLSDYET  448 (495)
Q Consensus       395 ~l~~l~~L~~L~l~~~~~~~~~~p~~-~~~~~~~~p~~L~~L~l~~~~~~~~~~~  448 (495)
                      .++++++|+.|+++.+....+  |.. +..+     ++|++|++++|+-..+.+.
T Consensus       272 ~l~~l~~L~~L~Ls~N~l~~i--~~~~~~~l-----~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          272 LLNQISGLLELEFSRNQLKSV--PDGIFDRL-----TSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             HHHTCTTCCEEECCSSCCCCC--CTTTTTTC-----TTCCEEECCSSCBCCCHHH
T ss_pred             HHhcccCCCEEECCCCCCCcc--CHHHHhcC-----CCCCEEEeeCCCccCcCCC
Confidence            889999999777754444433  655 4566     8999999999986666543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.46  E-value=6.8e-14  Score=146.45  Aligned_cols=246  Identities=13%  Similarity=0.071  Sum_probs=129.3

Q ss_pred             CcccccCCcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCc
Q 011021          162 PQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKL  240 (495)
Q Consensus       162 p~~l~~~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L  240 (495)
                      |..+..+++|++|++++|.+...+ ....+ +|++|+++++.+..  ++  ...++.|++|.+.+|..........+++|
T Consensus       275 ~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~--l~--~~~l~~L~~L~l~~n~~~~~~~~~~~~~L  349 (570)
T 2z63_A          275 IDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ--FP--TLKLKSLKRLTFTSNKGGNAFSEVDLPSL  349 (570)
T ss_dssp             TTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSS--CC--BCBCSSCCEEEEESCBSCCBCCCCBCTTC
T ss_pred             hhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccc--cC--cccccccCEEeCcCCccccccccccCCCC
Confidence            344444566666666666554433 33444 66666666666531  11  13566666666666654433333455666


Q ss_pred             cEEEeccccccceEEE------EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEE
Q 011021          241 KIMEIRSFSEEIEIVE------ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDL  314 (495)
Q Consensus       241 ~~L~i~~c~~~l~~~~------~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L  314 (495)
                      +.|++++|.  +....      ..+++|++|+++++.... .+..++.+++|+.|+++++.++.......+..+++|+.|
T Consensus       350 ~~L~l~~n~--l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  426 (570)
T 2z63_A          350 EFLDLSRNG--LSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL  426 (570)
T ss_dssp             CEEECCSSC--CBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred             CEEeCcCCc--cCccccccccccccCccCEEECCCCcccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence            666666653  21111      134566666666333211 222255666666666666555432221223455666666


Q ss_pred             EecCCCCCccccccccccceEEeccCCCccEEeccCCccceeeecccc-----cceEeecCCCCceEEEEEecccchhhh
Q 011021          315 FVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNP-----IPIISINVPCPWKVSFVCKGVLNTHWY  389 (495)
Q Consensus       315 ~L~~~~~~~~i~~~~~~L~~L~l~~c~~l~~l~~~~p~L~~l~~~~~~-----~~~~~~~~~~L~~l~i~~~~~~~~~~~  389 (495)
                      ++++|...+..+..+                  -.+++|+.+++.++.     +|..+..+++|+.|+++.+..     .
T Consensus       427 ~l~~n~l~~~~~~~~------------------~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l-----~  483 (570)
T 2z63_A          427 DISHTHTRVAFNGIF------------------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-----E  483 (570)
T ss_dssp             ECTTSCCEECCTTTT------------------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC-----C
T ss_pred             eCcCCcccccchhhh------------------hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcc-----c
Confidence            666653222111110                  113344444444433     222344678888888854433     2


Q ss_pred             cchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCCCc
Q 011021          390 LKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLS  444 (495)
Q Consensus       390 ~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~  444 (495)
                      ...+..++++++|+.|+++.+....+ .++.+..+     ++|+.|++++|+-..
T Consensus       484 ~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l-----~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          484 QLSPTAFNSLSSLQVLNMASNQLKSV-PDGIFDRL-----TSLQKIWLHTNPWDC  532 (570)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTC-----TTCCEEECCSSCBCC
T ss_pred             cCChhhhhcccCCCEEeCCCCcCCCC-CHHHhhcc-----cCCcEEEecCCcccC
Confidence            22366778889999777644333322 34556666     889999999887433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.45  E-value=1.2e-13  Score=144.53  Aligned_cols=57  Identities=12%  Similarity=0.180  Sum_probs=33.5

Q ss_pred             cCCccceeeecccccc----eEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEE
Q 011021          349 DAPNLLLFTYEFNPIP----IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLS  408 (495)
Q Consensus       349 ~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~  408 (495)
                      ..++|++++++++.+.    ..+.++++|+.|+++.+...+   +..++..++++++|+.|+++
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~~~l~~L~~L~l~  411 (562)
T 3a79_B          351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN---FFKVALMTKNMSSLETLDVS  411 (562)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB---TTHHHHTTTTCTTCCEEECT
T ss_pred             CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC---cccchhhhcCCCCCCEEECC
Confidence            3567777777776532    334567778887775433211   12344556777777766663

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.44  E-value=1.4e-13  Score=133.58  Aligned_cols=226  Identities=17%  Similarity=0.099  Sum_probs=146.1

Q ss_pred             CCcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce--eecCCCCccEEE
Q 011021          168 ANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIME  244 (495)
Q Consensus       168 ~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~--~i~~l~~L~~L~  244 (495)
                      ..++++|+|+++.+...+ ....+++|++|+|+++.++  .++..+.++++|++|++++|... .+  .+.++++|+.|+
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            378999999999987555 5677999999999999885  23344678999999999998643 32  234677888888


Q ss_pred             eccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcc
Q 011021          245 IRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK  324 (495)
Q Consensus       245 i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~  324 (495)
                      +++|. ....+.   ..+....+.         ..++++++|+.|+++++.++.  +...+.++++|+.|++++|... .
T Consensus       157 L~~n~-~~~~~p---~~~~~~~~~---------~~~~~l~~L~~L~L~~n~l~~--lp~~l~~l~~L~~L~L~~N~l~-~  220 (328)
T 4fcg_A          157 IRACP-ELTELP---EPLASTDAS---------GEHQGLVNLQSLRLEWTGIRS--LPASIANLQNLKSLKIRNSPLS-A  220 (328)
T ss_dssp             EEEET-TCCCCC---SCSEEEC-C---------CCEEESTTCCEEEEEEECCCC--CCGGGGGCTTCCEEEEESSCCC-C
T ss_pred             CCCCC-CccccC---hhHhhccch---------hhhccCCCCCEEECcCCCcCc--chHhhcCCCCCCEEEccCCCCC-c
Confidence            88775 221111   111111111         124579999999999998873  2233678999999999988432 2


Q ss_pred             ccc---cccccceEEeccCCCccEEeccCCccceeeecccccceEeecCCCCceEEEEEecccchhhhcchHHHhccCCc
Q 011021          325 IKI---SSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQ  401 (495)
Q Consensus       325 i~~---~~~~L~~L~l~~c~~l~~l~~~~p~L~~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~  401 (495)
                      ++.   ..++|+.|++++|.....+                 |..+.++++|+.|+++.+..     ...++..++++++
T Consensus       221 l~~~l~~l~~L~~L~Ls~n~~~~~~-----------------p~~~~~l~~L~~L~L~~n~~-----~~~~p~~~~~l~~  278 (328)
T 4fcg_A          221 LGPAIHHLPKLEELDLRGCTALRNY-----------------PPIFGGRAPLKRLILKDCSN-----LLTLPLDIHRLTQ  278 (328)
T ss_dssp             CCGGGGGCTTCCEEECTTCTTCCBC-----------------CCCTTCCCCCCEEECTTCTT-----CCBCCTTGGGCTT
T ss_pred             CchhhccCCCCCEEECcCCcchhhh-----------------HHHhcCCCCCCEEECCCCCc-----hhhcchhhhcCCC
Confidence            221   2345555555555433221                 12233577888888854444     3456666788888


Q ss_pred             cceEEEEEEecceecccccccccCCCCCCccceeEEEec
Q 011021          402 IESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTN  440 (495)
Q Consensus       402 L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~  440 (495)
                      |+.|+++.+.... ..|+.++++     ++++.+.+..+
T Consensus       279 L~~L~L~~n~~~~-~iP~~l~~L-----~~L~~l~l~~~  311 (328)
T 4fcg_A          279 LEKLDLRGCVNLS-RLPSLIAQL-----PANCIILVPPH  311 (328)
T ss_dssp             CCEEECTTCTTCC-CCCGGGGGS-----CTTCEEECCGG
T ss_pred             CCEEeCCCCCchh-hccHHHhhc-----cCceEEeCCHH
Confidence            8866664322111 347777777     77777766643

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.42  E-value=6.9e-14  Score=136.13  Aligned_cols=281  Identities=12%  Similarity=0.011  Sum_probs=157.4

Q ss_pred             cceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcc--eeecCCCCccEEEecc
Q 011021          170 SVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRS  247 (495)
Q Consensus       170 ~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~--~~i~~l~~L~~L~i~~  247 (495)
                      +++.++++++.+...+ ..-.++|+.|+++++.++.-. ...+.++++|++|++++|.....  ..+.++++|++|++++
T Consensus        34 ~l~~l~~~~~~l~~ip-~~~~~~l~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVP-KEISPDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             ETTEEECCSSCCSSCC-SCCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             cCCEEECCCCCccccC-CCCCCCCeEEECCCCcCCccC-HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            4666666666654433 112356777777766653211 11245667777777776653211  1234566777777766


Q ss_pred             ccccceEEEE-eCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChH-HHHHHhhcCCCCcEEEecCCCCCccc
Q 011021          248 FSEEIEIVEI-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN-EFNHLISKFPSLEDLFVTRCCLPGKI  325 (495)
Q Consensus       248 c~~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~~~~~i  325 (495)
                      +.  +..+.. ..++|++|+++.+.........++++++|+.|+++++.++.. .....+..+ +|+.|++++|.. ..+
T Consensus       112 n~--l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l-~~l  187 (332)
T 2ft3_A          112 NH--LVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL-TGI  187 (332)
T ss_dssp             SC--CCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC-SSC
T ss_pred             Cc--CCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC-Ccc
Confidence            64  211111 126777777774443322222355678888888887776531 111122233 778888877632 223


Q ss_pred             cc-cccccceEEeccCCCccEEe----ccCCccceeeecccccc----eEeecCCCCceEEEEEecccchhhhcchHHHh
Q 011021          326 KI-SSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP----IISINVPCPWKVSFVCKGVLNTHWYLKLKKFL  396 (495)
Q Consensus       326 ~~-~~~~L~~L~l~~c~~l~~l~----~~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l  396 (495)
                      +. .+++|+.|.++++. +..+.    ..+++|+.++++++.+.    ..+..+++|+.|+++.+.      +..++..+
T Consensus       188 ~~~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~------l~~lp~~l  260 (332)
T 2ft3_A          188 PKDLPETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK------LSRVPAGL  260 (332)
T ss_dssp             CSSSCSSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC------CCBCCTTG
T ss_pred             CccccCCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc------CeecChhh
Confidence            32 23577777776653 22221    23678888888887643    245678899999996443      34567778


Q ss_pred             ccCCccceEEEEEEecceecccccccccCC-CCCCccceeEEEecCCC--ccHHHHHHHHhhhccCCeeEEeec
Q 011021          397 GVSKQIESLKLSLYSTKVLYNLDELSECSP-SLPLQVENLELHTNVPL--SDYETLLDCVFWICHPRTLRVNVM  467 (495)
Q Consensus       397 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~-~~p~~L~~L~l~~~~~~--~~~~~l~~~l~~~~~l~~l~i~~~  467 (495)
                      ..+++|+.|+++......+ .++.+....+ ...+.++.|.+.+|+-.  ...+   ..+..+++|+.+.+.++
T Consensus       261 ~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~---~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          261 PDLKLLQVVYLHTNNITKV-GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP---ATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             GGCTTCCEEECCSSCCCBC-CTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG---GGGTTBCCSTTEEC---
T ss_pred             hcCccCCEEECCCCCCCcc-ChhHccccccccccccccceEeecCcccccccCc---ccccccchhhhhhcccc
Confidence            8999999777744333322 3344433200 01267889999998743  2222   33344667888887654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.42  E-value=1.6e-13  Score=133.46  Aligned_cols=281  Identities=13%  Similarity=0.046  Sum_probs=141.3

Q ss_pred             cceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcc--eeecCCCCccEEEecc
Q 011021          170 SVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRS  247 (495)
Q Consensus       170 ~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~--~~i~~l~~L~~L~i~~  247 (495)
                      +++.++++++.+...+ ..-.++|+.|+++++.+++-. ...+.++++|++|++++|.....  ..+.++++|++|++++
T Consensus        32 ~l~~l~~~~~~l~~lp-~~~~~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVP-KDLPPDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             ETTEEECTTSCCCSCC-CSCCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCeEEEecCCCccccC-ccCCCCCeEEECCCCcCCEeC-hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence            3455555544443322 111245555555555442110 01134455555555555432111  1223445555555555


Q ss_pred             ccccceEEEE-eCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChH-HHHHHhhcCCCCcEEEecCCCCCccc
Q 011021          248 FSEEIEIVEI-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN-EFNHLISKFPSLEDLFVTRCCLPGKI  325 (495)
Q Consensus       248 c~~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~~~~~i  325 (495)
                      +.  +..+.. ..++|++|+++.+.........++++++|+.|+++++.+... .....+..+++|+.|++.+|.. ..+
T Consensus       110 n~--l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l  186 (330)
T 1xku_A          110 NQ--LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTI  186 (330)
T ss_dssp             SC--CSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSC
T ss_pred             Cc--CCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc-ccC
Confidence            43  111111 124666666663333222222345677777777777666431 1122345677777777776632 222


Q ss_pred             cc-cccccceEEeccCCCccEEe----ccCCccceeeecccccc----eEeecCCCCceEEEEEecccchhhhcchHHHh
Q 011021          326 KI-SSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP----IISINVPCPWKVSFVCKGVLNTHWYLKLKKFL  396 (495)
Q Consensus       326 ~~-~~~~L~~L~l~~c~~l~~l~----~~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l  396 (495)
                      +. ..++|+.|.++++. +..+.    -.+++|++++++++.+.    ..+..+++|++|+++.+.      +..++..+
T Consensus       187 ~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~------l~~lp~~l  259 (330)
T 1xku_A          187 PQGLPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK------LVKVPGGL  259 (330)
T ss_dssp             CSSCCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC------CSSCCTTT
T ss_pred             CccccccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc------CccCChhh
Confidence            22 23567777776654 33332    13667777887777643    235568899999996443      34566778


Q ss_pred             ccCCccceEEEEEEecceecccccccccCC-CCCCccceeEEEecCCCc-cHHHHHHHHhhhccCCeeEEe
Q 011021          397 GVSKQIESLKLSLYSTKVLYNLDELSECSP-SLPLQVENLELHTNVPLS-DYETLLDCVFWICHPRTLRVN  465 (495)
Q Consensus       397 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~-~~p~~L~~L~l~~~~~~~-~~~~l~~~l~~~~~l~~l~i~  465 (495)
                      ..+++|+.|+++......+ .+..+..... ...+.++.|++.+|+-.. ..+.  .....+.+++.+.+.
T Consensus       260 ~~l~~L~~L~l~~N~i~~~-~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~--~~f~~~~~l~~l~L~  327 (330)
T 1xku_A          260 ADHKYIQVVYLHNNNISAI-GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP--STFRCVYVRAAVQLG  327 (330)
T ss_dssp             TTCSSCCEEECCSSCCCCC-CTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG--GGGTTCCCGGGEEC-
T ss_pred             ccCCCcCEEECCCCcCCcc-ChhhcCCcccccccccccceEeecCcccccccCc--cccccccceeEEEec
Confidence            8899999776643333322 2333322100 112678888898887322 1110  223334467777664

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.41  E-value=6e-14  Score=135.63  Aligned_cols=225  Identities=17%  Similarity=0.144  Sum_probs=111.1

Q ss_pred             CcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEec
Q 011021          169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIR  246 (495)
Q Consensus       169 ~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~  246 (495)
                      ++|++|++++|.+...+  .+..+++|++|+|+++.+++.. .  +..++.|++|++++|. +..+.  ..++|+.|++.
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~--~~~l~~L~~L~Ls~n~-l~~l~--~~~~L~~L~l~  107 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNY-VQELL--VGPSIETLHAA  107 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-E--ETTCTTCCEEECCSSE-EEEEE--ECTTCCEEECC
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-h--hhhcCCCCEEECcCCc-ccccc--CCCCcCEEECC
Confidence            34555555555443322  2344555555555554441100 0  3445555555555443 11111  12455555555


Q ss_pred             cccccceEEE-EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCccc
Q 011021          247 SFSEEIEIVE-ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI  325 (495)
Q Consensus       247 ~c~~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i  325 (495)
                      +|.  +..+. ...++|+.|+++.+......+..++.+++|+.|+++++.+++.....+...+++|+.|++++|.. ..+
T Consensus       108 ~n~--l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l-~~~  184 (317)
T 3o53_A          108 NNN--ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YDV  184 (317)
T ss_dssp             SSC--CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-CEE
T ss_pred             CCc--cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC-ccc
Confidence            543  22221 13455666666544433333334455667777777766665533333334566777777776632 222


Q ss_pred             c--ccccccceEEeccCCCccEEe---ccCCccceeeecccccc---eEeecCCCCceEEEEEecccchhhhcchHHHhc
Q 011021          326 K--ISSNQLKNLLFRSCKYLKVID---VDAPNLLLFTYEFNPIP---IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLG  397 (495)
Q Consensus       326 ~--~~~~~L~~L~l~~c~~l~~l~---~~~p~L~~l~~~~~~~~---~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~  397 (495)
                      +  ...++|+.|+++++. +..+.   ...++|+.++++++.+.   ..+..+++|+.++++.+...    -..++.++.
T Consensus       185 ~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~----~~~~~~~~~  259 (317)
T 3o53_A          185 KGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH----CGTLRDFFS  259 (317)
T ss_dssp             ECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB----HHHHHHHHH
T ss_pred             ccccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc----CcCHHHHHh
Confidence            1  124566666666543 22332   12556666666666532   22345677888887433321    124566777


Q ss_pred             cCCccceEEE
Q 011021          398 VSKQIESLKL  407 (495)
Q Consensus       398 ~l~~L~~L~l  407 (495)
                      .++.|+.+++
T Consensus       260 ~~~~L~~l~l  269 (317)
T 3o53_A          260 KNQRVQTVAK  269 (317)
T ss_dssp             TCHHHHHHHH
T ss_pred             ccccceEEEC
Confidence            7777775544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.40  E-value=2.9e-14  Score=137.57  Aligned_cols=61  Identities=13%  Similarity=-0.032  Sum_probs=33.8

Q ss_pred             cCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecC
Q 011021          369 NVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNV  441 (495)
Q Consensus       369 ~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~  441 (495)
                      .+++|++|+++.+..     ...++..+.++++|+.|+++...... ..|+. ..+     ++|+.|++.+|+
T Consensus       242 ~l~~L~~L~Ls~N~l-----~~~~p~~l~~l~~L~~L~Ls~N~l~~-~ip~~-~~l-----~~L~~l~l~~N~  302 (313)
T 1ogq_A          242 LSKNLNGLDLRNNRI-----YGTLPQGLTQLKFLHSLNVSFNNLCG-EIPQG-GNL-----QRFDVSAYANNK  302 (313)
T ss_dssp             CCTTCCEEECCSSCC-----EECCCGGGGGCTTCCEEECCSSEEEE-ECCCS-TTG-----GGSCGGGTCSSS
T ss_pred             ccCCCCEEECcCCcc-----cCcCChHHhcCcCCCEEECcCCcccc-cCCCC-ccc-----cccChHHhcCCC
Confidence            456777777754333     22356667777777766664322221 12333 444     667777777665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.40  E-value=1.1e-13  Score=141.82  Aligned_cols=226  Identities=18%  Similarity=0.147  Sum_probs=145.9

Q ss_pred             CCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEe
Q 011021          168 ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEI  245 (495)
Q Consensus       168 ~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i  245 (495)
                      +++|++|+|++|.+...+  .+..+++|++|+|++|.+++.. +  +..++.|++|++++|. +..+.  ..++|+.|++
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~-l~~l~--~~~~L~~L~L  106 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNY-VQELL--VGPSIETLHA  106 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-E--CTTCTTCCEEECCSSE-EEEEE--ECTTCCEEEC
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-c--cccCCCCCEEEecCCc-CCCCC--CCCCcCEEEC
Confidence            347888888887765543  4567788888888877763211 1  5677888888888774 23322  2378888888


Q ss_pred             ccccccceEEE-EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcc
Q 011021          246 RSFSEEIEIVE-ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK  324 (495)
Q Consensus       246 ~~c~~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~  324 (495)
                      ++|.  +..+. ...++|+.|+++++......+..++.+++|+.|++++|.+++..+..+...+++|+.|++++|.. ..
T Consensus       107 ~~N~--l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l-~~  183 (487)
T 3oja_A          107 ANNN--ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YD  183 (487)
T ss_dssp             CSSC--CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-CE
T ss_pred             cCCc--CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc-cc
Confidence            8775  22222 24678888888866555544556677888888888888877654444445678888888888743 22


Q ss_pred             cc--ccccccceEEeccCCCccEEe---ccCCccceeeecccccc---eEeecCCCCceEEEEEecccchhhhcchHHHh
Q 011021          325 IK--ISSNQLKNLLFRSCKYLKVID---VDAPNLLLFTYEFNPIP---IISINVPCPWKVSFVCKGVLNTHWYLKLKKFL  396 (495)
Q Consensus       325 i~--~~~~~L~~L~l~~c~~l~~l~---~~~p~L~~l~~~~~~~~---~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l  396 (495)
                      ++  ...++|+.|+++++. +..+.   ..+++|+.++++++.+.   ..+..+++|+.++++.+...    -..++.++
T Consensus       184 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~----c~~~~~~~  258 (487)
T 3oja_A          184 VKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH----CGTLRDFF  258 (487)
T ss_dssp             EECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC----HHHHHHHH
T ss_pred             ccccccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc----CcchHHHH
Confidence            21  135678888887764 33332   23677888888877643   23456778888888533321    12456777


Q ss_pred             ccCCccceEEE
Q 011021          397 GVSKQIESLKL  407 (495)
Q Consensus       397 ~~l~~L~~L~l  407 (495)
                      ..++.|+.+.+
T Consensus       259 ~~l~~L~~l~~  269 (487)
T 3oja_A          259 SKNQRVQTVAK  269 (487)
T ss_dssp             TTCHHHHHHHH
T ss_pred             HhCCCCcEEec
Confidence            77777775443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.39  E-value=1.5e-12  Score=136.43  Aligned_cols=259  Identities=15%  Similarity=0.060  Sum_probs=183.9

Q ss_pred             CcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEeccc
Q 011021          169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSF  248 (495)
Q Consensus       169 ~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c  248 (495)
                      .++++|+++++.+...+. .-.++|++|+|++|.++.  ++   ..+++|++|++++|. ++.++. .+++|+.|++++|
T Consensus        40 ~~l~~L~ls~n~L~~lp~-~l~~~L~~L~L~~N~l~~--lp---~~l~~L~~L~Ls~N~-l~~lp~-~l~~L~~L~Ls~N  111 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPD-CLPAHITTLVIPDNNLTS--LP---ALPPELRTLEVSGNQ-LTSLPV-LPPGLLELSIFSN  111 (622)
T ss_dssp             HCCCEEECCSSCCSCCCS-CCCTTCSEEEECSCCCSC--CC---CCCTTCCEEEECSCC-CSCCCC-CCTTCCEEEECSC
T ss_pred             CCCcEEEecCCCcCccCh-hhCCCCcEEEecCCCCCC--CC---CcCCCCCEEEcCCCc-CCcCCC-CCCCCCEEECcCC
Confidence            468999999998876542 123899999999998842  22   268999999999997 444443 6799999999988


Q ss_pred             cccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcccccc
Q 011021          249 SEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKIS  328 (495)
Q Consensus       249 ~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~~~  328 (495)
                      .  +..+....++|+.|+++.+.... .+.   .+++|++|++++|.++.     +...+++|+.|.+.+|. +..++..
T Consensus       112 ~--l~~l~~~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-----l~~~~~~L~~L~L~~N~-l~~l~~~  179 (622)
T 3g06_A          112 P--LTHLPALPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-----LPALPSELCKLWAYNNQ-LTSLPML  179 (622)
T ss_dssp             C--CCCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSC-CSCCCCC
T ss_pred             c--CCCCCCCCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCC-----cCCccCCCCEEECCCCC-CCCCccc
Confidence            5  33333367899999998554422 222   35899999999998765     12356899999999873 4456666


Q ss_pred             ccccceEEeccCCCccEEeccCCccceeeecccccceEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEE
Q 011021          329 SNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLS  408 (495)
Q Consensus       329 ~~~L~~L~l~~c~~l~~l~~~~p~L~~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~  408 (495)
                      +++|+.|+++++. +..+....++|+.+.+.++.+......+++|+.|+++.+.      +..++   ..+++|+.|+++
T Consensus       180 ~~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~------L~~lp---~~l~~L~~L~Ls  249 (622)
T 3g06_A          180 PSGLQELSVSDNQ-LASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNR------LTSLP---VLPSELKELMVS  249 (622)
T ss_dssp             CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSC------CSCCC---CCCTTCCEEECC
T ss_pred             CCCCcEEECCCCC-CCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCc------cCcCC---CCCCcCcEEECC
Confidence            7899999998864 5555445788999999988765211245789999996443      33344   567889977774


Q ss_pred             EEecceecccccccccCCCCCCccceeEEEecCCCccHHHHHHHHhhhccCCeeEEeeccccc
Q 011021          409 LYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVMFEED  471 (495)
Q Consensus       409 ~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l~~~~~l~~l~i~~~~~~~  471 (495)
                      .+....+  |.   .     +++|+.|++++|.-. .+|   ..+..+++|+.|.+.++.+..
T Consensus       250 ~N~L~~l--p~---~-----~~~L~~L~Ls~N~L~-~lp---~~l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          250 GNRLTSL--PM---L-----PSGLLSLSVYRNQLT-RLP---ESLIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             SSCCSCC--CC---C-----CTTCCEEECCSSCCC-SCC---GGGGGSCTTCEEECCSCCCCH
T ss_pred             CCCCCcC--Cc---c-----cccCcEEeCCCCCCC-cCC---HHHhhccccCEEEecCCCCCC
Confidence            4433332  33   2     278999999988633 344   445567899999998885443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.39  E-value=2.3e-13  Score=132.25  Aligned_cols=266  Identities=12%  Similarity=0.027  Sum_probs=146.4

Q ss_pred             cccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecC
Q 011021          159 YTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSK  236 (495)
Q Consensus       159 ~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~  236 (495)
                      ..+|..+.  ++|++|++++|.+...+  .+.++++|++|+|+++.++.-. ...+.++++|++|++++|.. ..+...-
T Consensus        44 ~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l-~~l~~~~  119 (330)
T 1xku_A           44 EKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQL-KELPEKM  119 (330)
T ss_dssp             CSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCC-SBCCSSC
T ss_pred             cccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC-HHHhcCCCCCCEEECCCCcC-CccChhh
Confidence            34554432  57778888887765543  4567788888888877763211 12255777888888877753 3333232


Q ss_pred             CCCccEEEeccccccceEEE----EeCCcceEEEEeecCCCC--ceeEEeecCCCccEEEeeccccChHHHHHHhhcCCC
Q 011021          237 ASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARR--PRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPS  310 (495)
Q Consensus       237 l~~L~~L~i~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~  310 (495)
                      .++|+.|++.++.  +..+.    ..+++|+.|+++.+....  ..+..++++++|+.|+++++.++.-  ..  ..+++
T Consensus       120 ~~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l--~~--~~~~~  193 (330)
T 1xku_A          120 PKTLQELRVHENE--ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI--PQ--GLPPS  193 (330)
T ss_dssp             CTTCCEEECCSSC--CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC--CS--SCCTT
T ss_pred             cccccEEECCCCc--ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC--Cc--ccccc
Confidence            3677888877764  22211    145777777777443321  1223355677888888877776541  00  12367


Q ss_pred             CcEEEecCCCCCcccc---ccccccceEEeccCCCccEEe----ccCCccceeeecccccc---eEeecCCCCceEEEEE
Q 011021          311 LEDLFVTRCCLPGKIK---ISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP---IISINVPCPWKVSFVC  380 (495)
Q Consensus       311 L~~L~L~~~~~~~~i~---~~~~~L~~L~l~~c~~l~~l~----~~~p~L~~l~~~~~~~~---~~~~~~~~L~~l~i~~  380 (495)
                      |+.|++++|...+..+   ...++|+.|+++++. +..+.    -.+++|+.++++++.+.   ..+..+++|+.|+++.
T Consensus       194 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~  272 (330)
T 1xku_A          194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN  272 (330)
T ss_dssp             CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCS
T ss_pred             CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCC
Confidence            8888887764222111   134677777777654 33332    13677888888777643   3345678888888864


Q ss_pred             ecccchhhhcch--HHHhccCCccceEEEEEEeccee-cccccccccCCCCCCccceeEEEecC
Q 011021          381 KGVLNTHWYLKL--KKFLGVSKQIESLKLSLYSTKVL-YNLDELSECSPSLPLQVENLELHTNV  441 (495)
Q Consensus       381 ~~~~~~~~~~~l--~~~l~~l~~L~~L~l~~~~~~~~-~~p~~~~~~~~~~p~~L~~L~l~~~~  441 (495)
                      +....-. ...+  .......+.|+.+++........ ..|..+...     ++++.+++++|+
T Consensus       273 N~i~~~~-~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~-----~~l~~l~L~~N~  330 (330)
T 1xku_A          273 NNISAIG-SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV-----YVRAAVQLGNYK  330 (330)
T ss_dssp             SCCCCCC-TTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTC-----CCGGGEEC----
T ss_pred             CcCCccC-hhhcCCcccccccccccceEeecCcccccccCccccccc-----cceeEEEecccC
Confidence            4322110 0000  00112246677555532222221 345566555     888888888763

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.36  E-value=1.7e-13  Score=131.74  Aligned_cols=222  Identities=17%  Similarity=0.106  Sum_probs=143.0

Q ss_pred             cccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChH-HHHHHHhcCCCccEEEEEecCCCcc-e
Q 011021          157 TVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQ-MVQKLASECPLLEDLCFSNCWGLKH-L  232 (495)
Q Consensus       157 ~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~-~l~~l~~~~p~Le~L~L~~c~~l~~-~  232 (495)
                      .-..+|..+.  ++|++|++++|.+...+  .+.++++|++|+|+++.++.. .....+.+++.|++|++++|..... .
T Consensus        18 ~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~   95 (306)
T 2z66_A           18 GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS   95 (306)
T ss_dssp             CCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEE
T ss_pred             CcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChh
Confidence            3445665443  68999999999877554  357899999999999887421 1112244789999999998864221 1


Q ss_pred             eecCCCCccEEEecccc-ccceE--EEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCC
Q 011021          233 CVSKASKLKIMEIRSFS-EEIEI--VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFP  309 (495)
Q Consensus       233 ~i~~l~~L~~L~i~~c~-~~l~~--~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~  309 (495)
                      .+.++++|+.|++.++. .....  .....++|++|+++.+......+..++.+++|+.|+++++.+++......+..++
T Consensus        96 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  175 (306)
T 2z66_A           96 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR  175 (306)
T ss_dssp             EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc
Confidence            24568899999998875 11111  1124678999988844432222233557889999999888876533334456788


Q ss_pred             CCcEEEecCCCCCcccc---ccccccceEEeccCCCccEEe----ccCCccceeeecccccc----eEeecC-CCCceEE
Q 011021          310 SLEDLFVTRCCLPGKIK---ISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP----IISINV-PCPWKVS  377 (495)
Q Consensus       310 ~L~~L~L~~~~~~~~i~---~~~~~L~~L~l~~c~~l~~l~----~~~p~L~~l~~~~~~~~----~~~~~~-~~L~~l~  377 (495)
                      +|+.|++++|...+..+   ...++|+.|.++++.- ..+.    -.+++|+.++++++.+.    ..+..+ ++|+.|+
T Consensus       176 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~  254 (306)
T 2z66_A          176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN  254 (306)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC-SBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEE
T ss_pred             CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCcc-CccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEE
Confidence            99999998874322212   2356788888877652 2221    23678888888887743    234445 4888888


Q ss_pred             EEEe
Q 011021          378 FVCK  381 (495)
Q Consensus       378 i~~~  381 (495)
                      ++.+
T Consensus       255 L~~N  258 (306)
T 2z66_A          255 LTQN  258 (306)
T ss_dssp             CTTC
T ss_pred             ccCC
Confidence            8533

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.36  E-value=3.9e-13  Score=129.90  Aligned_cols=233  Identities=13%  Similarity=0.005  Sum_probs=145.3

Q ss_pred             ceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEeccc
Q 011021          171 VTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSF  248 (495)
Q Consensus       171 L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c  248 (495)
                      ++..+++.+.+....  ....+++|++|+|+++.++.-. ...+.++++|++|++++|...+...+.++++|+.|++++|
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNN   90 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCC-HHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCC-HHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCC
Confidence            344444444443222  2345789999999999885322 2346789999999999997655556778899999999988


Q ss_pred             cccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcccc--
Q 011021          249 SEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK--  326 (495)
Q Consensus       249 ~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~--  326 (495)
                      .  +..+. ..++|+.|+++.+...   ......+++|+.|+++++.++.... ..+..+++|+.|++++|.......  
T Consensus        91 ~--l~~l~-~~~~L~~L~l~~n~l~---~~~~~~~~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~  163 (317)
T 3o53_A           91 Y--VQELL-VGPSIETLHAANNNIS---RVSCSRGQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLNEIDTVNFAE  163 (317)
T ss_dssp             E--EEEEE-ECTTCCEEECCSSCCS---EEEECCCSSCEEEECCSSCCCSGGG-BCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred             c--ccccc-CCCCcCEEECCCCccC---CcCccccCCCCEEECCCCCCCCccc-hhhhccCCCCEEECCCCCCCcccHHH
Confidence            4  44443 3589999999854442   2233457889999999888776221 123467889999998874322111  


Q ss_pred             --ccccccceEEeccCCCccEEeccCCccceeeecccccceEeecCCCCceEEEEEecccchhhhcchHHHhccCCccce
Q 011021          327 --ISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIES  404 (495)
Q Consensus       327 --~~~~~L~~L~l~~c~~l~~l~~~~p~L~~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~  404 (495)
                        ...++|+.|.++++. +..+.                  ....+++|+.|+++.+.      +..++..+..+++|+.
T Consensus       164 ~~~~l~~L~~L~L~~N~-l~~~~------------------~~~~l~~L~~L~Ls~N~------l~~l~~~~~~l~~L~~  218 (317)
T 3o53_A          164 LAASSDTLEHLNLQYNF-IYDVK------------------GQVVFAKLKTLDLSSNK------LAFMGPEFQSAAGVTW  218 (317)
T ss_dssp             GGGGTTTCCEEECTTSC-CCEEE------------------CCCCCTTCCEEECCSSC------CCEECGGGGGGTTCSE
T ss_pred             HhhccCcCCEEECCCCc-Ccccc------------------cccccccCCEEECCCCc------CCcchhhhcccCcccE
Confidence              123455555555443 22211                  11135677777774333      2233444667778886


Q ss_pred             EEEEEEecceecccccccccCCCCCCccceeEEEecCCC
Q 011021          405 LKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPL  443 (495)
Q Consensus       405 L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~  443 (495)
                      |+++.+....+  |+.+...     ++|+.|++++|+-.
T Consensus       219 L~L~~N~l~~l--~~~~~~l-----~~L~~L~l~~N~~~  250 (317)
T 3o53_A          219 ISLRNNKLVLI--EKALRFS-----QNLEHFDLRGNGFH  250 (317)
T ss_dssp             EECTTSCCCEE--CTTCCCC-----TTCCEEECTTCCCB
T ss_pred             EECcCCcccch--hhHhhcC-----CCCCEEEccCCCcc
Confidence            66644433333  6666555     78888888887754

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.34  E-value=4e-12  Score=128.91  Aligned_cols=268  Identities=16%  Similarity=0.093  Sum_probs=163.1

Q ss_pred             cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEE
Q 011021          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L  221 (495)
                      .++++|+  +..+..  ..+| .+..+++|++|++++|.+...+  ...++|++|+++++.++.  ++. +.+++.|++|
T Consensus       131 ~~L~~L~--L~~n~l--~~lp-~~~~l~~L~~L~l~~N~l~~lp--~~~~~L~~L~L~~n~l~~--l~~-~~~l~~L~~L  200 (454)
T 1jl5_A          131 PLLEYLG--VSNNQL--EKLP-ELQNSSFLKIIDVDNNSLKKLP--DLPPSLEFIAAGNNQLEE--LPE-LQNLPFLTAI  200 (454)
T ss_dssp             TTCCEEE--CCSSCC--SSCC-CCTTCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSS--CCC-CTTCTTCCEE
T ss_pred             CCCCEEE--CcCCCC--CCCc-ccCCCCCCCEEECCCCcCcccC--CCcccccEEECcCCcCCc--Ccc-ccCCCCCCEE
Confidence            4788888  544332  3467 5788999999999999887533  234699999999998843  222 6789999999


Q ss_pred             EEEecCCCcceeecCCCCccEEEecccc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHH
Q 011021          222 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE  300 (495)
Q Consensus       222 ~L~~c~~l~~~~i~~l~~L~~L~i~~c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  300 (495)
                      ++++|...+ +.. ..++|+.|++++|. ..+.. ....++|++|+++++.... .+   ...++|+.|+++++.+++  
T Consensus       201 ~l~~N~l~~-l~~-~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~---~~~~~L~~L~l~~N~l~~--  271 (454)
T 1jl5_A          201 YADNNSLKK-LPD-LPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LP---DLPPSLEALNVRDNYLTD--  271 (454)
T ss_dssp             ECCSSCCSS-CCC-CCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CC---SCCTTCCEEECCSSCCSC--
T ss_pred             ECCCCcCCc-CCC-CcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc-cc---ccccccCEEECCCCcccc--
Confidence            999986432 211 23689999999886 22222 1267889999998554422 11   135789999999988765  


Q ss_pred             HHHHhhcCCCCcEEEecCCCCCccccccccccceEEeccCCCccEEeccCCccceeeecccccceEeecCCCCceEEEEE
Q 011021          301 FNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVC  380 (495)
Q Consensus       301 ~~~l~~~~~~L~~L~L~~~~~~~~i~~~~~~L~~L~l~~c~~l~~l~~~~p~L~~l~~~~~~~~~~~~~~~~L~~l~i~~  380 (495)
                         +....++|+.|++++|. +..++...++|+.|+++++. +..+.--.++|+.++++++.+...-..+++|+.++++.
T Consensus       272 ---l~~~~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~-l~~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~  346 (454)
T 1jl5_A          272 ---LPELPQSLTFLDVSENI-FSGLSELPPNLYYLNASSNE-IRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASF  346 (454)
T ss_dssp             ---CCCCCTTCCEEECCSSC-CSEESCCCTTCCEEECCSSC-CSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred             ---cCcccCcCCEEECcCCc-cCcccCcCCcCCEEECcCCc-CCcccCCcCcCCEEECCCCccccccccCCcCCEEECCC
Confidence               22345789999999874 33333334688999888764 44443223588888888877541111357899999854


Q ss_pred             ecccchhhhcchHHHhccCCccceEEEEEEeccee-ccccccccc--------CCCCCCccceeEEEecCC
Q 011021          381 KGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVL-YNLDELSEC--------SPSLPLQVENLELHTNVP  442 (495)
Q Consensus       381 ~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~-~~p~~~~~~--------~~~~p~~L~~L~l~~~~~  442 (495)
                      +.      +..++.   .+++|+.|+++......+ ..|..+..+        .+..|++|+.|++++|+-
T Consensus       347 N~------l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l  408 (454)
T 1jl5_A          347 NH------LAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL  408 (454)
T ss_dssp             SC------CSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------
T ss_pred             Cc------cccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcC
Confidence            43      233444   467888777754333322 124444322        001125677777777663

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.31  E-value=8.2e-13  Score=133.72  Aligned_cols=89  Identities=18%  Similarity=0.069  Sum_probs=60.9

Q ss_pred             cccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce--
Q 011021          157 TVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--  232 (495)
Q Consensus       157 ~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~--  232 (495)
                      .-..+|..+.  ++++.|+|++|.+....  .+.++++|++|+|+++.++.-. ...+.++++|++|+|++|.. ..+  
T Consensus        54 ~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~l-~~~~~  129 (440)
T 3zyj_A           54 NLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNRL-TTIPN  129 (440)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEEC-GGGGTTCSSCCEEECCSSCC-SSCCT
T ss_pred             CcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccC-hhhccCCccCCEEECCCCcC-CeeCH
Confidence            4456676554  67899999998876433  5678899999999988773211 12356788899999988853 222  


Q ss_pred             -eecCCCCccEEEecccc
Q 011021          233 -CVSKASKLKIMEIRSFS  249 (495)
Q Consensus       233 -~i~~l~~L~~L~i~~c~  249 (495)
                       .+.++++|+.|++.++.
T Consensus       130 ~~~~~l~~L~~L~L~~N~  147 (440)
T 3zyj_A          130 GAFVYLSKLKELWLRNNP  147 (440)
T ss_dssp             TTSCSCSSCCEEECCSCC
T ss_pred             hHhhccccCceeeCCCCc
Confidence             23456777777777663

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.30  E-value=8.3e-13  Score=128.48  Aligned_cols=263  Identities=11%  Similarity=0.005  Sum_probs=143.4

Q ss_pred             cccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecC
Q 011021          159 YTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSK  236 (495)
Q Consensus       159 ~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~  236 (495)
                      ..+|..+.  ++|++|++++|.+...+  .+.++++|++|+++++.++.-. ...+.+++.|++|++++|.. ..++..-
T Consensus        46 ~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l-~~l~~~~  121 (332)
T 2ft3_A           46 KAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH-EKAFSPLRKLQKLYISKNHL-VEIPPNL  121 (332)
T ss_dssp             SSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-GGGSTTCTTCCEEECCSSCC-CSCCSSC
T ss_pred             cccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC-HhHhhCcCCCCEEECCCCcC-CccCccc
Confidence            35555443  57788888877765432  4567788888888877763211 12256778888888877753 2332222


Q ss_pred             CCCccEEEecccc-ccceEE-EEeCCcceEEEEeecCCCC--ceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCc
Q 011021          237 ASKLKIMEIRSFS-EEIEIV-EISVPSLQQLTLLFYGARR--PRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLE  312 (495)
Q Consensus       237 l~~L~~L~i~~c~-~~l~~~-~~~~p~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~  312 (495)
                      .++|++|++.++. ..+..- ...+++|+.|+++.+....  ..+..++.+ +|+.|+++++.++.  +..  ..+++|+
T Consensus       122 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~--l~~--~~~~~L~  196 (332)
T 2ft3_A          122 PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG--IPK--DLPETLN  196 (332)
T ss_dssp             CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS--CCS--SSCSSCS
T ss_pred             cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc--cCc--cccCCCC
Confidence            3678888887764 111111 1246778888777443311  112223344 77777777777654  110  1235777


Q ss_pred             EEEecCCCCCccc---cccccccceEEeccCCCccEEe----ccCCccceeeecccccc---eEeecCCCCceEEEEEec
Q 011021          313 DLFVTRCCLPGKI---KISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP---IISINVPCPWKVSFVCKG  382 (495)
Q Consensus       313 ~L~L~~~~~~~~i---~~~~~~L~~L~l~~c~~l~~l~----~~~p~L~~l~~~~~~~~---~~~~~~~~L~~l~i~~~~  382 (495)
                      .|++++|...+..   ....++|+.|+++++. +..+.    -.+++|+.++++++.+.   ..+..+++|+.++++.+.
T Consensus       197 ~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~  275 (332)
T 2ft3_A          197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN  275 (332)
T ss_dssp             CCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC
T ss_pred             EEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC
Confidence            7777776322211   1234567777776653 22221    23677777777776643   335577889988886443


Q ss_pred             ccchhhhcchHHHhc------cCCccceEEEEEEeccee-cccccccccCCCCCCccceeEEEecC
Q 011021          383 VLNTHWYLKLKKFLG------VSKQIESLKLSLYSTKVL-YNLDELSECSPSLPLQVENLELHTNV  441 (495)
Q Consensus       383 ~~~~~~~~~l~~~l~------~l~~L~~L~l~~~~~~~~-~~p~~~~~~~~~~p~~L~~L~l~~~~  441 (495)
                      ....     -+..+.      ..+.|+.+++........ ..|..+..+     ++++.+.+.+|+
T Consensus       276 l~~~-----~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l-----~~L~~l~l~~n~  331 (332)
T 2ft3_A          276 ITKV-----GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV-----TDRLAIQFGNYK  331 (332)
T ss_dssp             CCBC-----CTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTB-----CCSTTEEC----
T ss_pred             CCcc-----ChhHccccccccccccccceEeecCcccccccCccccccc-----chhhhhhccccc
Confidence            2211     011111      245677555533322211 345566666     888888888765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.28  E-value=2.3e-12  Score=130.96  Aligned_cols=88  Identities=19%  Similarity=0.164  Sum_probs=57.0

Q ss_pred             ccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce---
Q 011021          158 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---  232 (495)
Q Consensus       158 ~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~---  232 (495)
                      -..+|..+.  +++++|+|++|.+....  .+.++++|++|+|+++.++.-. ...+.++++|++|+|++|.. ..+   
T Consensus        66 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~  141 (452)
T 3zyi_A           66 LSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNWL-TVIPSG  141 (452)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCC-SBCCTT
T ss_pred             cCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcC-hhhccCcccCCEEECCCCcC-CccChh
Confidence            345665443  67888888888775432  5677888888888888773211 12356788888888888753 222   


Q ss_pred             eecCCCCccEEEecccc
Q 011021          233 CVSKASKLKIMEIRSFS  249 (495)
Q Consensus       233 ~i~~l~~L~~L~i~~c~  249 (495)
                      .+.++++|+.|+++++.
T Consensus       142 ~~~~l~~L~~L~L~~N~  158 (452)
T 3zyi_A          142 AFEYLSKLRELWLRNNP  158 (452)
T ss_dssp             TSSSCTTCCEEECCSCC
T ss_pred             hhcccCCCCEEECCCCC
Confidence            13356677777777663

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.27  E-value=1.2e-12  Score=126.11  Aligned_cols=215  Identities=15%  Similarity=0.079  Sum_probs=92.8

Q ss_pred             ccCcccccCCcceEEEEec-cccCCC-C-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce--ee
Q 011021          160 TLPQAIFSANSVTNLRLVW-CRLEQP-F-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CV  234 (495)
Q Consensus       160 ~lp~~l~~~~~L~~L~L~~-c~l~~~-~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~--~i  234 (495)
                      .+|..+..+++|++|++++ +.+... + .+..+++|++|+|+++.++.. +...+.++++|++|++++|...+..  .+
T Consensus        67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  145 (313)
T 1ogq_A           67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSI  145 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred             ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCCccCCcCChHH
Confidence            3455555555555555553 433211 1 344555555555555554211 1112345555555555555322111  12


Q ss_pred             cCCCCccEEEeccccccce-EEE---EeCC-cceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCC
Q 011021          235 SKASKLKIMEIRSFSEEIE-IVE---ISVP-SLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFP  309 (495)
Q Consensus       235 ~~l~~L~~L~i~~c~~~l~-~~~---~~~p-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~  309 (495)
                      .++++|+.|++.+|.  +. .+.   ...+ +|+.|+++.+...+..+..++.++ |+.|+++++.+++.. ...+..++
T Consensus       146 ~~l~~L~~L~L~~N~--l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~-~~~~~~l~  221 (313)
T 1ogq_A          146 SSLPNLVGITFDGNR--ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDA-SVLFGSDK  221 (313)
T ss_dssp             GGCTTCCEEECCSSC--CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECC-GGGCCTTS
T ss_pred             hcCCCCCeEECcCCc--ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcC-CHHHhcCC
Confidence            344555555555553  11 111   0222 555555553222211222233333 555555555544321 12234455


Q ss_pred             CCcEEEecCCCCCcccc--ccccccceEEeccCCCccEEe---ccCCccceeeecccccc---eEeecCCCCceEEEE
Q 011021          310 SLEDLFVTRCCLPGKIK--ISSNQLKNLLFRSCKYLKVID---VDAPNLLLFTYEFNPIP---IISINVPCPWKVSFV  379 (495)
Q Consensus       310 ~L~~L~L~~~~~~~~i~--~~~~~L~~L~l~~c~~l~~l~---~~~p~L~~l~~~~~~~~---~~~~~~~~L~~l~i~  379 (495)
                      +|+.|++++|.....++  ...++|+.|+++++.--..+.   ...++|+.++++++.+.   .....+++|+.+++.
T Consensus       222 ~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~  299 (313)
T 1ogq_A          222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA  299 (313)
T ss_dssp             CCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTC
T ss_pred             CCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhc
Confidence            56666555553221111  123455555555543211111   12455666666655432   111345556665553

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.27  E-value=1.5e-12  Score=125.06  Aligned_cols=239  Identities=14%  Similarity=0.044  Sum_probs=127.7

Q ss_pred             eEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcc----eeecCCCCccEEEecc
Q 011021          172 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH----LCVSKASKLKIMEIRS  247 (495)
Q Consensus       172 ~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~----~~i~~l~~L~~L~i~~  247 (495)
                      +.++.++..+...+ ..-.++|++|+|+++.++. .....+.++++|++|++++|.....    ....++++|+.|++++
T Consensus        10 ~~l~c~~~~l~~ip-~~~~~~l~~L~L~~n~l~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           10 TEIRCNSKGLTSVP-TGIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             TEEECCSSCCSSCC-SCCCTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             CEEEcCCCCcccCC-CCCCCCCCEEECCCCccCc-cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            45666666665543 2334799999999998842 1123357899999999998864321    1222568888888887


Q ss_pred             cc-ccceEEEEeCCcceEEEEeecCCCCcee-EEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCc-c
Q 011021          248 FS-EEIEIVEISVPSLQQLTLLFYGARRPRV-VEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG-K  324 (495)
Q Consensus       248 c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~-~  324 (495)
                      |. ..+.......++|++|+++.+....... ..+..+++|+.|+++++.++... ...+..+++|+.|++.+|...+ .
T Consensus        88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~  166 (306)
T 2z66_A           88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQENF  166 (306)
T ss_dssp             CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS-TTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc-hhhcccCcCCCEEECCCCcccccc
Confidence            74 1111112245666666665322211000 12344566666666655544311 1123445666666666552211 0


Q ss_pred             ccccccccceEEeccCCCccEEeccCCccceeeecccccc----eEeecCCCCceEEEEEecccchhhhcchHHHhccCC
Q 011021          325 IKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIP----IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSK  400 (495)
Q Consensus       325 i~~~~~~L~~L~l~~c~~l~~l~~~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~  400 (495)
                      ++..                  .-..++|++++++++.+.    ..+..+++|+.|+++.+...     ...+..+..++
T Consensus       167 ~~~~------------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~  223 (306)
T 2z66_A          167 LPDI------------------FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-----SLDTFPYKCLN  223 (306)
T ss_dssp             ECSC------------------CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS-----BCCSGGGTTCT
T ss_pred             chhH------------------HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC-----ccChhhccCcc
Confidence            1110                  012344444454444422    12345678888888533321     11223467788


Q ss_pred             ccceEEEEEEecceecccccccccCCCCCCccceeEEEecC
Q 011021          401 QIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNV  441 (495)
Q Consensus       401 ~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~  441 (495)
                      +|+.|+++...... ..+..+...    |++|+.|++++|+
T Consensus       224 ~L~~L~L~~N~l~~-~~~~~~~~~----~~~L~~L~L~~N~  259 (306)
T 2z66_A          224 SLQVLDYSLNHIMT-SKKQELQHF----PSSLAFLNLTQND  259 (306)
T ss_dssp             TCCEEECTTSCCCB-CSSSSCCCC----CTTCCEEECTTCC
T ss_pred             cCCEeECCCCCCcc-cCHHHHHhh----hccCCEEEccCCC
Confidence            88876664332222 234555443    3489999999887

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.26  E-value=2.6e-12  Score=131.60  Aligned_cols=216  Identities=13%  Similarity=0.021  Sum_probs=139.7

Q ss_pred             cCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEeccccccceEEEEeCCcceEEEE
Q 011021          188 IMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTL  267 (495)
Q Consensus       188 ~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l  267 (495)
                      ..+++|++|+|+++.++.- ....+..+++|++|+|++|...+..++.++++|+.|++++|.  +..+. ..++|+.|++
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~--l~~l~-~~~~L~~L~L  106 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY--VQELL-VGPSIETLHA  106 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSE--EEEEE-ECTTCCEEEC
T ss_pred             ccCCCccEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCc--CCCCC-CCCCcCEEEC
Confidence            3566999999999988432 123467899999999999986555567788999999999884  44443 3489999999


Q ss_pred             eecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCccccc----cccccceEEeccCCCc
Q 011021          268 LFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI----SSNQLKNLLFRSCKYL  343 (495)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~~----~~~~L~~L~l~~c~~l  343 (495)
                      +++....   .....+++|+.|+++++.+++... ..+..+++|+.|++++|...+..+.    ..++|+.|+++++. +
T Consensus       107 ~~N~l~~---~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l  181 (487)
T 3oja_A          107 ANNNISR---VSCSRGQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-I  181 (487)
T ss_dssp             CSSCCCC---EEECCCSSCEEEECCSSCCCSGGG-BCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-C
T ss_pred             cCCcCCC---CCccccCCCCEEECCCCCCCCCCc-hhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-c
Confidence            8555432   222457899999999998876322 1235678999999998743332221    23455555555443 2


Q ss_pred             cEEeccCCccceeeecccccceEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccc
Q 011021          344 KVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSE  423 (495)
Q Consensus       344 ~~l~~~~p~L~~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~  423 (495)
                      ..+.                  ....+++|+.|+++.+..      ..++..+..+++|+.|+++.+....+  |..+..
T Consensus       182 ~~~~------------------~~~~l~~L~~L~Ls~N~l------~~~~~~~~~l~~L~~L~Ls~N~l~~l--p~~l~~  235 (487)
T 3oja_A          182 YDVK------------------GQVVFAKLKTLDLSSNKL------AFMGPEFQSAAGVTWISLRNNKLVLI--EKALRF  235 (487)
T ss_dssp             CEEE------------------CCCCCTTCCEEECCSSCC------CEECGGGGGGTTCSEEECTTSCCCEE--CTTCCC
T ss_pred             cccc------------------ccccCCCCCEEECCCCCC------CCCCHhHcCCCCccEEEecCCcCccc--chhhcc
Confidence            2111                  111366777777753332      23344467777888666644333333  666655


Q ss_pred             cCCCCCCccceeEEEecCCC
Q 011021          424 CSPSLPLQVENLELHTNVPL  443 (495)
Q Consensus       424 ~~~~~p~~L~~L~l~~~~~~  443 (495)
                      +     ++|+.|++.+|+-.
T Consensus       236 l-----~~L~~L~l~~N~l~  250 (487)
T 3oja_A          236 S-----QNLEHFDLRGNGFH  250 (487)
T ss_dssp             C-----TTCCEEECTTCCBC
T ss_pred             C-----CCCCEEEcCCCCCc
Confidence            5     77888888877644

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.25  E-value=8.5e-12  Score=119.93  Aligned_cols=165  Identities=15%  Similarity=0.109  Sum_probs=89.8

Q ss_pred             HcCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccE
Q 011021          141 ENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED  220 (495)
Q Consensus       141 ~~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  220 (495)
                      ..++++|+  +..+.  ...+| .+..+++|++|++++|.+...+....+++|++|+++++.+++-  . .+..++.|++
T Consensus        40 l~~L~~L~--l~~~~--i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~  111 (308)
T 1h6u_A           40 LDGITTLS--AFGTG--VTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKT  111 (308)
T ss_dssp             HHTCCEEE--CTTSC--CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCE
T ss_pred             cCCcCEEE--eeCCC--ccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCE
Confidence            35677777  54322  22344 4556777888888877765544466777788888877777321  1 2566777777


Q ss_pred             EEEEecCCCcceeecCCCCccEEEecccc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChH
Q 011021          221 LCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN  299 (495)
Q Consensus       221 L~L~~c~~l~~~~i~~l~~L~~L~i~~c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  299 (495)
                      |++++|..-....+..+++|+.|++++|. ..+.. ...+++|+.|+++.+.......  +..+++|+.|+++++.+++.
T Consensus       112 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~  188 (308)
T 1h6u_A          112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI  188 (308)
T ss_dssp             EECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             EECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC
Confidence            77777764332234556677777776664 11111 1134555555555333221111  34455555555555554431


Q ss_pred             HHHHHhhcCCCCcEEEecCC
Q 011021          300 EFNHLISKFPSLEDLFVTRC  319 (495)
Q Consensus       300 ~~~~l~~~~~~L~~L~L~~~  319 (495)
                      ..   +..+++|+.|++++|
T Consensus       189 ~~---l~~l~~L~~L~L~~N  205 (308)
T 1h6u_A          189 SP---LASLPNLIEVHLKNN  205 (308)
T ss_dssp             GG---GGGCTTCCEEECTTS
T ss_pred             hh---hcCCCCCCEEEccCC
Confidence            11   344555555555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.23  E-value=3.1e-13  Score=130.30  Aligned_cols=171  Identities=18%  Similarity=0.129  Sum_probs=98.4

Q ss_pred             CCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHH-------HhcCCCccEEEEEecCCCcce--ee--cC
Q 011021          168 ANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKL-------ASECPLLEDLCFSNCWGLKHL--CV--SK  236 (495)
Q Consensus       168 ~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l-------~~~~p~Le~L~L~~c~~l~~~--~i--~~  236 (495)
                      .++|++|++++|.+..+....  ..|+.|+|+++.+....+...       ..+++.|++|++++|...+..  .+  ..
T Consensus        42 ~~~L~~l~l~~n~l~~p~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  119 (312)
T 1wwl_A           42 GRSLEYLLKRVDTEADLGQFT--DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT  119 (312)
T ss_dssp             EEECTTHHHHCCTTCCCHHHH--HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred             CCCceeEeecccccccHHHHH--HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence            355667777777662211112  227777777776621111111       126788888888888643222  11  45


Q ss_pred             CCCccEEEecccc-ccceEEEEe-----CCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHH--HHHH-hhc
Q 011021          237 ASKLKIMEIRSFS-EEIEIVEIS-----VPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE--FNHL-ISK  307 (495)
Q Consensus       237 l~~L~~L~i~~c~-~~l~~~~~~-----~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l-~~~  307 (495)
                      +++|+.|+++++. .+.......     .++|++|+++++......+..++.+++|+.|+++++.+.+..  +..+ ...
T Consensus       120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  199 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK  199 (312)
T ss_dssp             SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred             CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence            7888888888775 111110011     278888888865554333345667889999999988876532  2222 267


Q ss_pred             CCCCcEEEecCCCCCc--cccc----cccccceEEeccC
Q 011021          308 FPSLEDLFVTRCCLPG--KIKI----SSNQLKNLLFRSC  340 (495)
Q Consensus       308 ~~~L~~L~L~~~~~~~--~i~~----~~~~L~~L~l~~c  340 (495)
                      +++|+.|++++|...+  .+..    ..++|+.|+++++
T Consensus       200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N  238 (312)
T 1wwl_A          200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN  238 (312)
T ss_dssp             CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred             CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC
Confidence            8899999998874221  1111    2245666665554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.20  E-value=2.9e-11  Score=116.13  Aligned_cols=187  Identities=15%  Similarity=0.131  Sum_probs=120.8

Q ss_pred             cCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEec
Q 011021          167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIR  246 (495)
Q Consensus       167 ~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~  246 (495)
                      .+++|++|++++|.+...+....+++|++|+++++.+++-.  . +.++++|++|++++|..-....+..+++|+.|+++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~--~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT  115 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECT
T ss_pred             HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCCh--h-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECC
Confidence            35678888888887765555667888888888888773211  2 67788888888888864332234567888888888


Q ss_pred             ccc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCccc
Q 011021          247 SFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI  325 (495)
Q Consensus       247 ~c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i  325 (495)
                      +|. ..+.. ...+++|+.|+++.+......  .++.+++|+.|+++++.+++-.  . +..+++|+.|++++|.. ..+
T Consensus       116 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~l-~~~  188 (308)
T 1h6u_A          116 STQITDVTP-LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT--P-LANLSKLTTLKADDNKI-SDI  188 (308)
T ss_dssp             TSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCC-CCC
T ss_pred             CCCCCCchh-hcCCCCCCEEECCCCccCcCc--cccCCCCccEEEccCCcCCCCh--h-hcCCCCCCEEECCCCcc-CcC
Confidence            775 22211 124678888888754443221  1567788888888888776522  1 56778888888887732 222


Q ss_pred             c--ccccccceEEeccCCCccEEe-ccCCccceeeeccccc
Q 011021          326 K--ISSNQLKNLLFRSCKYLKVID-VDAPNLLLFTYEFNPI  363 (495)
Q Consensus       326 ~--~~~~~L~~L~l~~c~~l~~l~-~~~p~L~~l~~~~~~~  363 (495)
                      .  ...++|+.|.++++.--.... ..+++|+.++++++.+
T Consensus       189 ~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          189 SPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             GGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred             hhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCee
Confidence            1  245678888887764221111 2367788888877653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.20  E-value=1.2e-12  Score=130.04  Aligned_cols=161  Identities=12%  Similarity=0.076  Sum_probs=74.2

Q ss_pred             cccCcccccCCcceEEEEeccccCCCC------CccCCCCCcEEEeeeEeeC---h---HH---HHHHHhcCCCccEEEE
Q 011021          159 YTLPQAIFSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVCLD---E---QM---VQKLASECPLLEDLCF  223 (495)
Q Consensus       159 ~~lp~~l~~~~~L~~L~L~~c~l~~~~------~~~~l~~L~~L~L~~~~~~---~---~~---l~~l~~~~p~Le~L~L  223 (495)
                      ..++..+..+++|++|+|++|.+....      ....+++|++|+|+++.+.   +   ..   +...+..+++|++|++
T Consensus        22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            344444555566666666666554321      2335666666666665331   1   11   1222345666666666


Q ss_pred             EecCCCcc----e--eecCCCCccEEEecccccc---ceEEE---EeC---------CcceEEEEeecCCC-Ccee---E
Q 011021          224 SNCWGLKH----L--CVSKASKLKIMEIRSFSEE---IEIVE---ISV---------PSLQQLTLLFYGAR-RPRV---V  278 (495)
Q Consensus       224 ~~c~~l~~----~--~i~~l~~L~~L~i~~c~~~---l~~~~---~~~---------p~L~~L~l~~~~~~-~~~~---~  278 (495)
                      ++|.....    +  .+..+++|++|++++|.-.   ...+.   ...         ++|++|+++++... ...+   .
T Consensus       102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  181 (386)
T 2ca6_A          102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  181 (386)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence            66653220    1  1224456666666555300   00000   001         45555555533322 1111   1


Q ss_pred             EeecCCCccEEEeeccccChHHHHH----HhhcCCCCcEEEecCC
Q 011021          279 EVARSPHLKKLDLVSVYFADNEFNH----LISKFPSLEDLFVTRC  319 (495)
Q Consensus       279 ~~~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~~L~~L~L~~~  319 (495)
                      .+..+++|++|++++|.+++.....    .+..+++|+.|+|++|
T Consensus       182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n  226 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN  226 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS
T ss_pred             HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC
Confidence            2334556666666666555433222    2335556666666555

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.18  E-value=1.1e-11  Score=117.82  Aligned_cols=157  Identities=16%  Similarity=0.101  Sum_probs=98.8

Q ss_pred             ccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce---
Q 011021          158 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---  232 (495)
Q Consensus       158 ~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~---  232 (495)
                      -..+|..+  .++|++|+++++.+...+  .+..+++|++|+++++.++.-. ...+.+++.|++|++++|..++.+   
T Consensus        23 l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~   99 (285)
T 1ozn_A           23 LQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPA   99 (285)
T ss_dssp             CSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             cccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHH
Confidence            34555433  368999999998876543  4678899999999988774221 223567899999999998744443   


Q ss_pred             eecCCCCccEEEeccccccceEEE----EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcC
Q 011021          233 CVSKASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKF  308 (495)
Q Consensus       233 ~i~~l~~L~~L~i~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~  308 (495)
                      .+.++++|+.|++.+|.  +..+.    ..+++|++|+++++.........++.+++|+.|+++++.++... ...+..+
T Consensus       100 ~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l  176 (285)
T 1ozn_A          100 TFHGLGRLHTLHLDRCG--LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-ERAFRGL  176 (285)
T ss_dssp             TTTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTC
T ss_pred             HhcCCcCCCEEECCCCc--CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC-HHHhcCc
Confidence            33467888888888875  22111    13567777777644332222222455677777777776655311 1123456


Q ss_pred             CCCcEEEecCCC
Q 011021          309 PSLEDLFVTRCC  320 (495)
Q Consensus       309 ~~L~~L~L~~~~  320 (495)
                      ++|+.|++++|.
T Consensus       177 ~~L~~L~l~~n~  188 (285)
T 1ozn_A          177 HSLDRLLLHQNR  188 (285)
T ss_dssp             TTCCEEECCSSC
T ss_pred             cccCEEECCCCc
Confidence            677777777653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.15  E-value=4.2e-11  Score=117.40  Aligned_cols=214  Identities=17%  Similarity=0.093  Sum_probs=120.8

Q ss_pred             cCceEeEEEeecCCCccccc-CcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCc
Q 011021          142 NGVRELDFENITDENTVYTL-PQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  218 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L  218 (495)
                      .+++.|+  +..+.  ...+ |..+..+++|++|++++|.+...+  .+.++++|++|+++++.++.-.....+.++++|
T Consensus        76 ~~L~~L~--L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L  151 (353)
T 2z80_A           76 VNLQALV--LTSNG--INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL  151 (353)
T ss_dssp             TTCCEEE--CTTSC--CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred             CCCCEEE--CCCCc--cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCC
Confidence            5677777  54322  2223 445666788999999888877654  256788899999988877421110135678889


Q ss_pred             cEEEEEecCCCcce---eecCCCCccEEEeccccccceEEE----EeCCcceEEEEeecCCCCceeEEeecCCCccEEEe
Q 011021          219 EDLCFSNCWGLKHL---CVSKASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDL  291 (495)
Q Consensus       219 e~L~L~~c~~l~~~---~i~~l~~L~~L~i~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  291 (495)
                      ++|++++|..++..   .+.++++|+.|++++|.  +..+.    ..+++|++|+++++.........++.+++|+.|++
T Consensus       152 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  229 (353)
T 2z80_A          152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD--LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL  229 (353)
T ss_dssp             CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT--CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEE
T ss_pred             cEEECCCCccccccCHHHccCCCCCCEEECCCCC--cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEEC
Confidence            99999888655544   23467888888888774  22221    13567777777744432211112234677777777


Q ss_pred             eccccChHHHHH--HhhcCCCCcEEEecCCCCCc----ccc---ccccccceEEeccCCCccEEe----ccCCccceeee
Q 011021          292 VSVYFADNEFNH--LISKFPSLEDLFVTRCCLPG----KIK---ISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTY  358 (495)
Q Consensus       292 ~~~~~~~~~~~~--l~~~~~~L~~L~L~~~~~~~----~i~---~~~~~L~~L~l~~c~~l~~l~----~~~p~L~~l~~  358 (495)
                      +++.+++.....  .....+.++.+++..+....    .++   ..+++|+.|+++++. ++.+.    -.+++|+++++
T Consensus       230 ~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L  308 (353)
T 2z80_A          230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWL  308 (353)
T ss_dssp             ESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEe
Confidence            777655421111  11234455555555542111    111   123455666655542 22332    12566666777


Q ss_pred             cccc
Q 011021          359 EFNP  362 (495)
Q Consensus       359 ~~~~  362 (495)
                      +++.
T Consensus       309 ~~N~  312 (353)
T 2z80_A          309 HTNP  312 (353)
T ss_dssp             CSSC
T ss_pred             eCCC
Confidence            6654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.13  E-value=4.4e-11  Score=121.44  Aligned_cols=211  Identities=15%  Similarity=0.122  Sum_probs=134.2

Q ss_pred             cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCcc
Q 011021          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  219 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  219 (495)
                      .+++.|+  +..+.. ....|..+..+++|++|+|++|.+....  .+.++++|++|+|+++.++.- ....+.++++|+
T Consensus        75 ~~l~~L~--L~~n~i-~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~  150 (452)
T 3zyi_A           75 SNTRYLN--LMENNI-QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLR  150 (452)
T ss_dssp             TTCSEEE--CCSSCC-CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCC
T ss_pred             CCccEEE--CcCCcC-ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc-ChhhhcccCCCC
Confidence            4677777  543221 1222445666788888888888765433  566788888888888877321 122356788888


Q ss_pred             EEEEEecCCCcce---eecCCCCccEEEeccccccceEEEE----eCCcceEEEEeecCCCCceeEEeecCCCccEEEee
Q 011021          220 DLCFSNCWGLKHL---CVSKASKLKIMEIRSFSEEIEIVEI----SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLV  292 (495)
Q Consensus       220 ~L~L~~c~~l~~~---~i~~l~~L~~L~i~~c~~~l~~~~~----~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  292 (495)
                      +|++++|.. ..+   .+.++++|+.|++.+|. .+..+..    .+++|++|+++++....  ...+..+++|+.|+++
T Consensus       151 ~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~Ls  226 (452)
T 3zyi_A          151 ELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELK-KLEYISEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMS  226 (452)
T ss_dssp             EEECCSCCC-CEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCTTCCEEECTTSCCSS--CCCCTTCTTCCEEECT
T ss_pred             EEECCCCCc-ceeCHhHHhcCCcccEEeCCCCC-CccccChhhccCCCCCCEEECCCCcccc--cccccccccccEEECc
Confidence            888888864 222   23467888888888765 4444432    46788888888554432  1245677888888888


Q ss_pred             ccccChHHHHHHhhcCCCCcEEEecCCCCCcccc---ccccccceEEeccCCCccEEe----ccCCccceeeecccc
Q 011021          293 SVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK---ISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNP  362 (495)
Q Consensus       293 ~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~---~~~~~L~~L~l~~c~~l~~l~----~~~p~L~~l~~~~~~  362 (495)
                      ++.+++... ..+.++++|+.|++.+|.......   ...++|+.|+++++. +..+.    -.+++|+.+++.++.
T Consensus       227 ~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          227 GNHFPEIRP-GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             TSCCSEECG-GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             CCcCcccCc-ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence            887765322 234677888888888774322111   235678888887763 43333    236778888888765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.12  E-value=3.3e-11  Score=115.99  Aligned_cols=153  Identities=16%  Similarity=0.088  Sum_probs=95.3

Q ss_pred             cCCcceEEEEeccccCCC-C-Cc--cCCCCCcEEEeeeEeeChH--HHHHHHh-cCCCccEEEEEecCCCcce--eecCC
Q 011021          167 SANSVTNLRLVWCRLEQP-F-DS--IMLCSLKKLTLERVCLDEQ--MVQKLAS-ECPLLEDLCFSNCWGLKHL--CVSKA  237 (495)
Q Consensus       167 ~~~~L~~L~L~~c~l~~~-~-~~--~~l~~L~~L~L~~~~~~~~--~l~~l~~-~~p~Le~L~L~~c~~l~~~--~i~~l  237 (495)
                      .+++|++|++++|.+... + ..  ..+++|++|+|+++.+++.  .+..+.. ..+.|++|++++|...+..  .+.++
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            578999999999987642 2 33  7899999999999988432  2222111 1388999999988642211  23345


Q ss_pred             CCccEEEeccccccceEEEEeCCcceEEEEeecCCCCc--e--eEEeecCCCccEEEeeccccCh--HHHHHHhhcCCCC
Q 011021          238 SKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRP--R--VVEVARSPHLKKLDLVSVYFAD--NEFNHLISKFPSL  311 (495)
Q Consensus       238 ~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~--~--~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~~L  311 (495)
                      ++|+.|++++|.                      ..+.  .  ...++.+++|++|+++++.++.  .....+..++++|
T Consensus       173 ~~L~~L~Ls~N~----------------------l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L  230 (312)
T 1wwl_A          173 PALSTLDLSDNP----------------------ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL  230 (312)
T ss_dssp             SSCCEEECCSCT----------------------TCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCC
T ss_pred             CCCCEEECCCCC----------------------cCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCC
Confidence            666666666553                      1110  0  1112567889999999888874  3344555678899


Q ss_pred             cEEEecCCCCCcccc----ccccccceEEeccCC
Q 011021          312 EDLFVTRCCLPGKIK----ISSNQLKNLLFRSCK  341 (495)
Q Consensus       312 ~~L~L~~~~~~~~i~----~~~~~L~~L~l~~c~  341 (495)
                      +.|++++|...+..+    ...++|+.|+++++.
T Consensus       231 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~  264 (312)
T 1wwl_A          231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG  264 (312)
T ss_dssp             SEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred             CEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence            999999875333221    123566666666543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.11  E-value=4.3e-11  Score=126.62  Aligned_cols=122  Identities=16%  Similarity=0.127  Sum_probs=68.9

Q ss_pred             CceEeEEEeecCCCcccccCc-ccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCcc
Q 011021          143 GVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  219 (495)
Q Consensus       143 ~l~~L~l~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  219 (495)
                      .+++|+  +..+  .-..+|+ .+..+++|++|+|++|.+...+  .+.++++|++|+|++|.++.- ....+.++++|+
T Consensus        53 ~~~~Ld--Ls~N--~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L~  127 (635)
T 4g8a_A           53 STKNLD--LSFN--PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQ  127 (635)
T ss_dssp             TCCEEE--CTTS--CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CGGGGTTCTTCC
T ss_pred             CCCEEE--eeCC--CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC-CHHHhcCCCCCC
Confidence            566666  4332  2234443 4455777777777777765432  356677777777777766321 112356677777


Q ss_pred             EEEEEecCCC--cceeecCCCCccEEEecccc-ccc--eEEEEeCCcceEEEEee
Q 011021          220 DLCFSNCWGL--KHLCVSKASKLKIMEIRSFS-EEI--EIVEISVPSLQQLTLLF  269 (495)
Q Consensus       220 ~L~L~~c~~l--~~~~i~~l~~L~~L~i~~c~-~~l--~~~~~~~p~L~~L~l~~  269 (495)
                      +|++.+|...  ....+.++++|+.|++.++. ..+  .......++|++|+++.
T Consensus       128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~  182 (635)
T 4g8a_A          128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS  182 (635)
T ss_dssp             EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred             EEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC
Confidence            7777777532  22234566777777777664 111  11111346666666663

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.11  E-value=4.6e-11  Score=120.83  Aligned_cols=194  Identities=13%  Similarity=0.103  Sum_probs=105.3

Q ss_pred             cccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcc--eeecCCC
Q 011021          163 QAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKAS  238 (495)
Q Consensus       163 ~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~--~~i~~l~  238 (495)
                      ..+..+++|++|+|++|.+....  .+.++++|++|+|++|.++.- ....+.++++|++|++++|.....  ..+.+++
T Consensus        82 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~  160 (440)
T 3zyj_A           82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP  160 (440)
T ss_dssp             TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCT
T ss_pred             HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee-CHhHhhccccCceeeCCCCcccccCHHHhhhCc
Confidence            34455677777777777654332  455677777777777766311 111245667777777776653211  1233566


Q ss_pred             CccEEEeccccccceEEEE----eCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEE
Q 011021          239 KLKIMEIRSFSEEIEIVEI----SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDL  314 (495)
Q Consensus       239 ~L~~L~i~~c~~~l~~~~~----~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L  314 (495)
                      +|+.|++.+|. .+..+..    .+++|++|+++.+.... . ..+..+++|+.|++++|.++.... ..+.++++|+.|
T Consensus       161 ~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L  236 (440)
T 3zyj_A          161 SLRRLDLGELK-RLSYISEGAFEGLSNLRYLNLAMCNLRE-I-PNLTPLIKLDELDLSGNHLSAIRP-GSFQGLMHLQKL  236 (440)
T ss_dssp             TCCEEECCCCT-TCCEECTTTTTTCSSCCEEECTTSCCSS-C-CCCTTCSSCCEEECTTSCCCEECT-TTTTTCTTCCEE
T ss_pred             ccCEeCCCCCC-CcceeCcchhhcccccCeecCCCCcCcc-c-cccCCCcccCEEECCCCccCccCh-hhhccCccCCEE
Confidence            77777776654 3333321    35667777776443321 1 134566677777777776654211 224556777777


Q ss_pred             EecCCCCCcccc---ccccccceEEeccCCCccEEe----ccCCccceeeecccc
Q 011021          315 FVTRCCLPGKIK---ISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNP  362 (495)
Q Consensus       315 ~L~~~~~~~~i~---~~~~~L~~L~l~~c~~l~~l~----~~~p~L~~l~~~~~~  362 (495)
                      ++.+|.......   ...++|+.|+++++. +..+.    -.+++|+.++++++.
T Consensus       237 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          237 WMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             ECTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             ECCCCceeEEChhhhcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCC
Confidence            777663221111   134566677666652 33332    124666677766654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.10  E-value=2.7e-11  Score=114.97  Aligned_cols=171  Identities=14%  Similarity=0.043  Sum_probs=112.5

Q ss_pred             cCceEeEEEeecCCCcccccC-cccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEe-eChHHHHHHHhcCCC
Q 011021          142 NGVRELDFENITDENTVYTLP-QAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVC-LDEQMVQKLASECPL  217 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~~p~  217 (495)
                      .++++|+  +..+.  ...++ ..+..+++|++|++++|.+....  .+.++++|++|+++++. ++.- ....+.+++.
T Consensus        32 ~~l~~L~--l~~n~--i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~  106 (285)
T 1ozn_A           32 AASQRIF--LHGNR--ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGR  106 (285)
T ss_dssp             TTCSEEE--CTTSC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTT
T ss_pred             CCceEEE--eeCCc--CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCcC
Confidence            4677777  54322  22334 34566788999999988775432  56778899999998886 4221 1223567889


Q ss_pred             ccEEEEEecCCCcc--eeecCCCCccEEEeccccccceEEE----EeCCcceEEEEeecCCCCceeEEeecCCCccEEEe
Q 011021          218 LEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDL  291 (495)
Q Consensus       218 Le~L~L~~c~~l~~--~~i~~l~~L~~L~i~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  291 (495)
                      |++|++.+|.....  ..+.++++|+.|++.++.  +..+.    ..+++|+.|+++++.........+..+++|+.|++
T Consensus       107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  184 (285)
T 1ozn_A          107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA--LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL  184 (285)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc--ccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEEC
Confidence            99999988864322  124467889999998875  22222    14678999998855442211123567889999999


Q ss_pred             eccccChHHHHHHhhcCCCCcEEEecCCC
Q 011021          292 VSVYFADNEFNHLISKFPSLEDLFVTRCC  320 (495)
Q Consensus       292 ~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  320 (495)
                      +++.+++... ..+..+++|+.|++++|.
T Consensus       185 ~~n~l~~~~~-~~~~~l~~L~~L~l~~n~  212 (285)
T 1ozn_A          185 HQNRVAHVHP-HAFRDLGRLMTLYLFANN  212 (285)
T ss_dssp             CSSCCCEECT-TTTTTCTTCCEEECCSSC
T ss_pred             CCCcccccCH-hHccCcccccEeeCCCCc
Confidence            9888765322 234567889999998873

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.09  E-value=6.3e-11  Score=109.35  Aligned_cols=183  Identities=13%  Similarity=0.086  Sum_probs=94.5

Q ss_pred             CcceEEEEeccccCCCC--CccCCCCCcEEEeeeEe-eChHHHHHHHhcCCCccEEEEEecCCCccee---ecCCCCccE
Q 011021          169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVC-LDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASKLKI  242 (495)
Q Consensus       169 ~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~---i~~l~~L~~  242 (495)
                      ++|++|+++++.+...+  .+.++++|++|+++++. ++.- ....+.++++|++|++.+|..+..+.   +.++++|+.
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            47888888888765443  45677888888888775 4210 01124577788888887744444433   234566666


Q ss_pred             EEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCcc---EEEeecc-ccChHHHHHHhhcCCCCc-EEEec
Q 011021          243 MEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLK---KLDLVSV-YFADNEFNHLISKFPSLE-DLFVT  317 (495)
Q Consensus       243 L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~l~~~~~~L~-~L~L~  317 (495)
                      |++.+|.                      ... .+. ++.+++|+   .|+++++ .++.- ....+.++++|+ .|+++
T Consensus       110 L~l~~n~----------------------l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i-~~~~~~~l~~L~~~L~l~  164 (239)
T 2xwt_C          110 LGIFNTG----------------------LKM-FPD-LTKVYSTDIFFILEITDNPYMTSI-PVNAFQGLCNETLTLKLY  164 (239)
T ss_dssp             EEEEEEC----------------------CCS-CCC-CTTCCBCCSEEEEEEESCTTCCEE-CTTTTTTTBSSEEEEECC
T ss_pred             EeCCCCC----------------------Ccc-ccc-cccccccccccEEECCCCcchhhc-CcccccchhcceeEEEcC
Confidence            6666553                      111 111 23334444   5555554 33321 011123445555 55555


Q ss_pred             CCCCCccccc---cccccceEEeccCCCccEEec----cC-Cccceeeecccccc-eEeecCCCCceEEE
Q 011021          318 RCCLPGKIKI---SSNQLKNLLFRSCKYLKVIDV----DA-PNLLLFTYEFNPIP-IISINVPCPWKVSF  378 (495)
Q Consensus       318 ~~~~~~~i~~---~~~~L~~L~l~~c~~l~~l~~----~~-p~L~~l~~~~~~~~-~~~~~~~~L~~l~i  378 (495)
                      ++.. +.++.   ..++|+.|.+.++++++.+..    .+ ++|+.++++++.+. +....+++|+.|.+
T Consensus       165 ~n~l-~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l  233 (239)
T 2xwt_C          165 NNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIA  233 (239)
T ss_dssp             SCCC-CEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEEC
T ss_pred             CCCC-cccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeec
Confidence            4421 12211   113555555555544544431    23 56666666666543 22224667777776

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.08  E-value=9.8e-11  Score=111.49  Aligned_cols=146  Identities=17%  Similarity=0.066  Sum_probs=71.2

Q ss_pred             cccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEE
Q 011021          165 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME  244 (495)
Q Consensus       165 l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~  244 (495)
                      +..+++|++|++++|.+...+....+++|++|+++++.+++  ++. +..++.|++|++++|.......+..+++|+.|+
T Consensus        64 ~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~  140 (291)
T 1h6t_A           64 IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLESLY  140 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEE
T ss_pred             HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEECCCCcCCCChhhcCCCCCCEEE
Confidence            45566677777776666544345566667777776666632  111 456666666666666432222233455666666


Q ss_pred             ecccc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCC
Q 011021          245 IRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (495)
Q Consensus       245 i~~c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~  319 (495)
                      +++|. ..+ .....+++|+.|+++.+......+  +..+++|+.|+++++.+++-  .. +..+++|+.|++.+|
T Consensus       141 l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l--~~-l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          141 LGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RA-LAGLKNLDVLELFSQ  210 (291)
T ss_dssp             CCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GG-GTTCTTCSEEEEEEE
T ss_pred             ccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC--hh-hccCCCCCEEECcCC
Confidence            66553 111 000133445555554332221111  33445555555555444431  11 234445555555443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.07  E-value=1.7e-10  Score=108.97  Aligned_cols=139  Identities=18%  Similarity=0.124  Sum_probs=88.3

Q ss_pred             cccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcc--e
Q 011021          157 TVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--L  232 (495)
Q Consensus       157 ~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~--~  232 (495)
                      ....+|..+.  ++|++|++++|.+...+  .+.++++|++|+++++.++.-. ...+.++++|++|++++|.....  .
T Consensus        18 ~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~   94 (276)
T 2z62_A           18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALG   94 (276)
T ss_dssp             CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred             CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCccCccChh
Confidence            3445666543  57999999998876543  5678899999999998773211 12356788999999988864221  1


Q ss_pred             eecCCCCccEEEecccc-ccceEEEE-eCCcceEEEEeecCCCC-ceeEEeecCCCccEEEeeccccCh
Q 011021          233 CVSKASKLKIMEIRSFS-EEIEIVEI-SVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDLVSVYFAD  298 (495)
Q Consensus       233 ~i~~l~~L~~L~i~~c~-~~l~~~~~-~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~  298 (495)
                      .+.++++|+.|++.++. ..+....+ .+++|++|+++.+.... ..+..++.+++|+.|+++++.++.
T Consensus        95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~  163 (276)
T 2z62_A           95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  163 (276)
T ss_dssp             TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence            24467888888888775 22211112 45677777776443322 123445667777777777776554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.07  E-value=5.6e-11  Score=112.04  Aligned_cols=131  Identities=17%  Similarity=0.074  Sum_probs=58.7

Q ss_pred             cccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce--eecCCCCccE
Q 011021          165 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKI  242 (495)
Q Consensus       165 l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~--~i~~l~~L~~  242 (495)
                      +..+++|++|++++|.+........+++|++|+++++.++.- ....+.+++.|++|++.+|......  .+.++++|+.
T Consensus        59 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  137 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY  137 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence            444555555555555554433444555555555555554211 1112344555555555555321111  1223444444


Q ss_pred             EEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCC
Q 011021          243 MEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (495)
Q Consensus       243 L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~  319 (495)
                      |++.+|.                      .....+..++.+++|+.|+++++.+++. ....+..+++|+.|++.+|
T Consensus       138 L~L~~n~----------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          138 LNLAHNQ----------------------LQSLPKGVFDKLTNLTELDLSYNQLQSL-PEGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             EECCSSC----------------------CCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCc----------------------cCccCHHHhccCccCCEEECCCCCcCcc-CHHHhcCCccCCEEECCCC
Confidence            4444442                      2111111133455666666665555431 1122344556666666655

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.07  E-value=8.6e-11  Score=110.60  Aligned_cols=153  Identities=18%  Similarity=0.121  Sum_probs=83.6

Q ss_pred             ccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee---e
Q 011021          160 TLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---V  234 (495)
Q Consensus       160 ~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~---i  234 (495)
                      .+|..+.  ++|++|++++|.+...+  .+.++++|++|+|+++.++. .....+.+++.|++|++++|... .+.   +
T Consensus        30 ~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~  105 (270)
T 2o6q_A           30 AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQ-ALPIGVF  105 (270)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCSSCCC-CCCTTTT
T ss_pred             ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCEEECCCCcCC-cCCHhHc
Confidence            4554432  56788888887765443  45677888888887777631 11123456778888888777532 222   2


Q ss_pred             cCCCCccEEEeccccccceEEE----EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCC
Q 011021          235 SKASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPS  310 (495)
Q Consensus       235 ~~l~~L~~L~i~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~  310 (495)
                      .++++|+.|++.++.  +..+.    ..+++|++|+++++.........++.+++|+.|+++++.++... ...+..+++
T Consensus       106 ~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~  182 (270)
T 2o6q_A          106 DQLVNLAELRLDRNQ--LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP-EGAFDKLTE  182 (270)
T ss_dssp             TTCSSCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTT
T ss_pred             ccccCCCEEECCCCc--cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC-hhHhccCCC
Confidence            346677777777664  11111    13456666666533332211112345566666666666554311 112334566


Q ss_pred             CcEEEecCC
Q 011021          311 LEDLFVTRC  319 (495)
Q Consensus       311 L~~L~L~~~  319 (495)
                      |+.|++++|
T Consensus       183 L~~L~L~~N  191 (270)
T 2o6q_A          183 LKTLKLDNN  191 (270)
T ss_dssp             CCEEECCSS
T ss_pred             cCEEECCCC
Confidence            666666655

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.07  E-value=5.1e-11  Score=114.60  Aligned_cols=163  Identities=18%  Similarity=0.149  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHcCceEeEEEeecCCCcccccCccc--ccCCcceEEEEeccccCCCC------CccCCCCCcEEEeeeEe
Q 011021          131 IVDRWIRLAVENGVRELDFENITDENTVYTLPQAI--FSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVC  202 (495)
Q Consensus       131 ~~~~wi~~a~~~~l~~L~l~l~~~~~~~~~lp~~l--~~~~~L~~L~L~~c~l~~~~------~~~~l~~L~~L~L~~~~  202 (495)
                      .+..........++++|+  +..+. -....|..+  ..+++|++|++++|.+....      ....+++|++|+|++|.
T Consensus        80 ~~~~~~~~~~~~~L~~L~--l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~  156 (310)
T 4glp_A           80 LLVGALRVLAYSRLKELT--LEDLK-ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH  156 (310)
T ss_dssp             HHHHHHHHHHHSCCCEEE--EESCC-CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS
T ss_pred             HHHHHHHhcccCceeEEE--eeCCE-eccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC
Confidence            444444444445677777  43221 122334443  45666777777776655321      12346667777776666


Q ss_pred             eChHHHHHHHhcCCCccEEEEEecCCCcc------eeecCCCCccEEEecccc-ccceEE----EEeCCcceEEEEeecC
Q 011021          203 LDEQMVQKLASECPLLEDLCFSNCWGLKH------LCVSKASKLKIMEIRSFS-EEIEIV----EISVPSLQQLTLLFYG  271 (495)
Q Consensus       203 ~~~~~l~~l~~~~p~Le~L~L~~c~~l~~------~~i~~l~~L~~L~i~~c~-~~l~~~----~~~~p~L~~L~l~~~~  271 (495)
                      +... ....+.++++|++|++++|...+.      .....+++|+.|++++|. ..+...    .-..++|++|+++++.
T Consensus       157 l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~  235 (310)
T 4glp_A          157 SPAF-SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS  235 (310)
T ss_dssp             SCCC-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC
T ss_pred             cchh-hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC
Confidence            5211 112244566666666666654321      111345666666666654 111110    0123555555555333


Q ss_pred             CCCceeEEeecC---CCccEEEeeccccC
Q 011021          272 ARRPRVVEVARS---PHLKKLDLVSVYFA  297 (495)
Q Consensus       272 ~~~~~~~~~~~~---~~L~~L~l~~~~~~  297 (495)
                      .....+..++.+   ++|++|++++|.++
T Consensus       236 l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          236 LRATVNPSAPRCMWSSALNSLNLSFAGLE  264 (310)
T ss_dssp             CCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred             CCccchhhHHhccCcCcCCEEECCCCCCC
Confidence            322212222222   45555555555544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.06  E-value=1.4e-10  Score=103.56  Aligned_cols=146  Identities=20%  Similarity=0.203  Sum_probs=77.3

Q ss_pred             cCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCc--ceeecCCCCccEEE
Q 011021          167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKLKIME  244 (495)
Q Consensus       167 ~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~--~~~i~~l~~L~~L~  244 (495)
                      .+++|++|++++|.+...++...+++|++|+++++.++.-  . .+..++.|++|++++|....  ...+.++++|+.|+
T Consensus        42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            3456666666666655433455666666666666654221  1 24556666666666665322  22334556666666


Q ss_pred             ecccc-cc-ceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCC
Q 011021          245 IRSFS-EE-IEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (495)
Q Consensus       245 i~~c~-~~-l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~  319 (495)
                      +++|. .. .......+++|+.|+++++......+ .++.+++|+.|+++++.+++-.   .+..+++|+.|++.++
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCc
Confidence            66554 10 00000134556666655433111111 3456677777777777665521   2456677777777665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.05  E-value=4.7e-11  Score=112.53  Aligned_cols=149  Identities=17%  Similarity=0.103  Sum_probs=96.3

Q ss_pred             HcCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCc
Q 011021          141 ENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  218 (495)
Q Consensus       141 ~~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L  218 (495)
                      ..+++.|+  +..+..  ..+ ..+..+++|++|++++|.+...+  .+..+++|++|+++++.++.- ....+.+++.|
T Consensus        62 l~~L~~L~--l~~n~l--~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L  135 (272)
T 3rfs_A           62 LPNVRYLA--LGGNKL--HDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL-PDGVFDKLTNL  135 (272)
T ss_dssp             CTTCCEEE--CTTSCC--CCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTC
T ss_pred             CCCCcEEE--CCCCCC--CCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCcc-CHHHhccCCCC
Confidence            36888888  654322  223 36777899999999999887654  367899999999999988421 12336789999


Q ss_pred             cEEEEEecCCCccee---ecCCCCccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccc
Q 011021          219 EDLCFSNCWGLKHLC---VSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY  295 (495)
Q Consensus       219 e~L~L~~c~~l~~~~---i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  295 (495)
                      ++|++.+|.. ..+.   +.++++|+.|++.+|.  +..+                    .+..++.+++|+.|+++++.
T Consensus       136 ~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~--l~~~--------------------~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          136 TYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQ--LQSL--------------------PEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             CEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC--CCCC--------------------CTTTTTTCTTCCEEECCSSC
T ss_pred             CEEECCCCcc-CccCHHHhccCccCCEEECCCCC--cCcc--------------------CHHHhcCCccCCEEECCCCc
Confidence            9999999953 3322   3456778888877764  1111                    11112345666666666666


Q ss_pred             cChHHHHHHhhcCCCCcEEEecCC
Q 011021          296 FADNEFNHLISKFPSLEDLFVTRC  319 (495)
Q Consensus       296 ~~~~~~~~l~~~~~~L~~L~L~~~  319 (495)
                      +++.. ...+..+++|+.|++.+|
T Consensus       193 l~~~~-~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          193 LKSVP-DGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             CSCCC-TTTTTTCTTCCEEECCSS
T ss_pred             CCccC-HHHHhCCcCCCEEEccCC
Confidence            55411 122345666666666665

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.03  E-value=4.2e-11  Score=115.20  Aligned_cols=136  Identities=13%  Similarity=0.050  Sum_probs=82.9

Q ss_pred             CCcceEEEEeccccCCCC--Cc--cCCCCCcEEEeeeEeeChHH--HH-HHHhcCCCccEEEEEecCCCcc--eeecCCC
Q 011021          168 ANSVTNLRLVWCRLEQPF--DS--IMLCSLKKLTLERVCLDEQM--VQ-KLASECPLLEDLCFSNCWGLKH--LCVSKAS  238 (495)
Q Consensus       168 ~~~L~~L~L~~c~l~~~~--~~--~~l~~L~~L~L~~~~~~~~~--l~-~l~~~~p~Le~L~L~~c~~l~~--~~i~~l~  238 (495)
                      .++|++|++++|.+....  ..  ..+++|++|+|++|.++...  +. .-+..+++|++|++++|.....  ..+.+++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            466999999998875433  33  77889999999999884311  11 1234788899999988864221  1223456


Q ss_pred             CccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccCh--HHHHHHhhcCCCCcEEEe
Q 011021          239 KLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFAD--NEFNHLISKFPSLEDLFV  316 (495)
Q Consensus       239 ~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~~L~~L~L  316 (495)
                      +|+.|++++|. -....               +  ......++.+++|++|++++|.++.  .....+...+++|+.|++
T Consensus       170 ~L~~L~Ls~N~-l~~~~---------------~--~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~L  231 (310)
T 4glp_A          170 ALTSLDLSDNP-GLGER---------------G--LMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDL  231 (310)
T ss_dssp             TCCEEECCSCT-TCHHH---------------H--HHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEEC
T ss_pred             CCCEEECCCCC-Cccch---------------h--hhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEEC
Confidence            66666666553 00000               0  0001112457788888888888763  222234567788888888


Q ss_pred             cCCCC
Q 011021          317 TRCCL  321 (495)
Q Consensus       317 ~~~~~  321 (495)
                      ++|..
T Consensus       232 s~N~l  236 (310)
T 4glp_A          232 SHNSL  236 (310)
T ss_dssp             TTSCC
T ss_pred             CCCCC
Confidence            88743

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.02  E-value=6.2e-11  Score=117.67  Aligned_cols=82  Identities=22%  Similarity=0.313  Sum_probs=38.0

Q ss_pred             ecCCCccEEEeeccccChHH---HHHHhhcCCCCcEEEecCCCCCcc----ccc-----cccccceEEeccCCCcc----
Q 011021          281 ARSPHLKKLDLVSVYFADNE---FNHLISKFPSLEDLFVTRCCLPGK----IKI-----SSNQLKNLLFRSCKYLK----  344 (495)
Q Consensus       281 ~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~~L~~L~L~~~~~~~~----i~~-----~~~~L~~L~l~~c~~l~----  344 (495)
                      ..+++|+.|++++|.+++..   +...+..+++|+.|++++|.....    ++.     ..++|+.|.+++|.--.    
T Consensus       213 ~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~  292 (386)
T 2ca6_A          213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR  292 (386)
T ss_dssp             GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH
T ss_pred             hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH
Confidence            34556666666655554321   222334555666666655532111    111     13455555555553211    


Q ss_pred             EEe----ccCCccceeeecccc
Q 011021          345 VID----VDAPNLLLFTYEFNP  362 (495)
Q Consensus       345 ~l~----~~~p~L~~l~~~~~~  362 (495)
                      .+.    ..+++|++++++++.
T Consensus       293 ~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          293 TLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHHHHHHhcCCCceEEEccCCc
Confidence            111    124666666666654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.00  E-value=1.5e-10  Score=113.97  Aligned_cols=156  Identities=15%  Similarity=0.113  Sum_probs=80.7

Q ss_pred             CcccccCCcceEEEEeccccCCCC------CccCCC-CCcEEEeeeEeeCh---HHHHHHHhcC-CCccEEEEEecCCCc
Q 011021          162 PQAIFSANSVTNLRLVWCRLEQPF------DSIMLC-SLKKLTLERVCLDE---QMVQKLASEC-PLLEDLCFSNCWGLK  230 (495)
Q Consensus       162 p~~l~~~~~L~~L~L~~c~l~~~~------~~~~l~-~L~~L~L~~~~~~~---~~l~~l~~~~-p~Le~L~L~~c~~l~  230 (495)
                      |..+...++|++|+|++|.+...+      .+..++ +|++|+|++|.+++   ..+...+..+ +.|++|++++|..-.
T Consensus        15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~   94 (362)
T 3goz_A           15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY   94 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred             HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence            333333456888888888765543      234566 78888888887743   3344444443 788888888876321


Q ss_pred             ce------eecCC-CCccEEEeccccccceEEEE--------e-CCcceEEEEeecCCCCce----eEEeecCC-CccEE
Q 011021          231 HL------CVSKA-SKLKIMEIRSFSEEIEIVEI--------S-VPSLQQLTLLFYGARRPR----VVEVARSP-HLKKL  289 (495)
Q Consensus       231 ~~------~i~~l-~~L~~L~i~~c~~~l~~~~~--------~-~p~L~~L~l~~~~~~~~~----~~~~~~~~-~L~~L  289 (495)
                      ..      .+..+ ++|+.|++++|.  +.....        . .++|++|+++++......    ...+...+ +|++|
T Consensus        95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L  172 (362)
T 3goz_A           95 KSSDELVKTLAAIPFTITVLDLGWND--FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL  172 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECCSSC--GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred             HHHHHHHHHHHhCCCCccEEECcCCc--CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence            11      02233 577777777664  111110        0 235666666533322111    01112233 66666


Q ss_pred             EeeccccChH---HHHHHhhcCC-CCcEEEecCC
Q 011021          290 DLVSVYFADN---EFNHLISKFP-SLEDLFVTRC  319 (495)
Q Consensus       290 ~l~~~~~~~~---~~~~l~~~~~-~L~~L~L~~~  319 (495)
                      ++++|.+++.   .+...+..++ +|+.|++++|
T Consensus       173 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N  206 (362)
T 3goz_A          173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSAN  206 (362)
T ss_dssp             ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred             eecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC
Confidence            6666665442   2223333443 6666666665

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.00  E-value=4.2e-10  Score=103.79  Aligned_cols=190  Identities=16%  Similarity=0.080  Sum_probs=113.4

Q ss_pred             CceEeEEEeecCCCcccccCc-ccccCCcceEEEEeccc-cCCCC--CccCCCCCcEEEeee-EeeChHHHHHHHhcCCC
Q 011021          143 GVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCR-LEQPF--DSIMLCSLKKLTLER-VCLDEQMVQKLASECPL  217 (495)
Q Consensus       143 ~l~~L~l~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~c~-l~~~~--~~~~l~~L~~L~L~~-~~~~~~~l~~l~~~~p~  217 (495)
                      ++++|+  +..+  .-..+|. .+..+++|++|++++|. +...+  .+.++++|++|++++ +.++.- ....+.++++
T Consensus        32 ~l~~L~--l~~n--~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~  106 (239)
T 2xwt_C           32 STQTLK--LIET--HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALKELPL  106 (239)
T ss_dssp             TCCEEE--EESC--CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEECCTT
T ss_pred             cccEEE--EeCC--cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhCCCCC
Confidence            677777  4432  2234454 45568999999999996 65433  567899999999998 666321 1123568899


Q ss_pred             ccEEEEEecCCCcceeecCCCCcc---EEEeccccccceEEEE----eCCcce-EEEEeecCCCCceeEEeecCCCccEE
Q 011021          218 LEDLCFSNCWGLKHLCVSKASKLK---IMEIRSFSEEIEIVEI----SVPSLQ-QLTLLFYGARRPRVVEVARSPHLKKL  289 (495)
Q Consensus       218 Le~L~L~~c~~l~~~~i~~l~~L~---~L~i~~c~~~l~~~~~----~~p~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L  289 (495)
                      |++|++.+|...+-..+..+++|+   .|++.++. .+..+..    .+++|+ .|+++.+... ..+......++|+.|
T Consensus       107 L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~-~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L  184 (239)
T 2xwt_C          107 LKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP-YMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAV  184 (239)
T ss_dssp             CCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCT-TCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEE
T ss_pred             CCEEeCCCCCCccccccccccccccccEEECCCCc-chhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEE
Confidence            999999998643322244556666   88888773 2333221    356777 7777644332 111111123677888


Q ss_pred             Eeeccc-cChHHHHHHhhcC-CCCcEEEecCCCCCccccc-cccccceEEeccCC
Q 011021          290 DLVSVY-FADNEFNHLISKF-PSLEDLFVTRCCLPGKIKI-SSNQLKNLLFRSCK  341 (495)
Q Consensus       290 ~l~~~~-~~~~~~~~l~~~~-~~L~~L~L~~~~~~~~i~~-~~~~L~~L~l~~c~  341 (495)
                      +++++. ++.- ....+.++ ++|+.|+++++.. ..++. .+++|+.|.+.++.
T Consensus       185 ~L~~n~~l~~i-~~~~~~~l~~~L~~L~l~~N~l-~~l~~~~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          185 YLNKNKYLTVI-DKDAFGGVYSGPSLLDVSQTSV-TALPSKGLEHLKELIARNTW  237 (239)
T ss_dssp             ECTTCTTCCEE-CTTTTTTCSBCCSEEECTTCCC-CCCCCTTCTTCSEEECTTC-
T ss_pred             EcCCCCCcccC-CHHHhhccccCCcEEECCCCcc-ccCChhHhccCceeeccCcc
Confidence            887774 5431 12223456 7788888877532 23322 35666666665554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.99  E-value=1.5e-10  Score=108.85  Aligned_cols=171  Identities=16%  Similarity=0.075  Sum_probs=119.8

Q ss_pred             cCceEeEEEeecCCCcccccCc-ccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCc
Q 011021          142 NGVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  218 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L  218 (495)
                      .++++|+  +..+.  ...+|. .+..+++|++|++++|.+...+  .+..+++|++|+++++.+..-. ...+.++++|
T Consensus        37 ~~l~~L~--l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L  111 (270)
T 2o6q_A           37 ADTKKLD--LQSNK--LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP-IGVFDQLVNL  111 (270)
T ss_dssp             TTCSEEE--CCSSC--CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC-TTTTTTCSSC
T ss_pred             CCCCEEE--CcCCC--CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC-HhHcccccCC
Confidence            3677777  54322  234444 5667899999999999876554  3467999999999999884211 1345789999


Q ss_pred             cEEEEEecCCCcc--eeecCCCCccEEEeccccccceEEE----EeCCcceEEEEeecCCCCceeEEeecCCCccEEEee
Q 011021          219 EDLCFSNCWGLKH--LCVSKASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLV  292 (495)
Q Consensus       219 e~L~L~~c~~l~~--~~i~~l~~L~~L~i~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  292 (495)
                      ++|++.+|.....  ..+.++++|+.|+++++.  +..+.    ..+++|+.|+++.+.........+..+++|+.|+++
T Consensus       112 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  189 (270)
T 2o6q_A          112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE--LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD  189 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CEEECCCCccCeeCHHHhCcCcCCCEEECCCCc--CCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECC
Confidence            9999999864322  224568999999999885  22222    246899999998554433222335678999999999


Q ss_pred             ccccChHHHHHHhhcCCCCcEEEecCCC
Q 011021          293 SVYFADNEFNHLISKFPSLEDLFVTRCC  320 (495)
Q Consensus       293 ~~~~~~~~~~~l~~~~~~L~~L~L~~~~  320 (495)
                      ++.++.. ....+..+++|+.|++.+|+
T Consensus       190 ~N~l~~~-~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          190 NNQLKRV-PEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             SSCCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCCcC-CHHHhccccCCCEEEecCCC
Confidence            9987652 22334678999999999874

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.99  E-value=4.1e-10  Score=107.13  Aligned_cols=166  Identities=16%  Similarity=0.117  Sum_probs=124.5

Q ss_pred             ccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEe
Q 011021          166 FSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEI  245 (495)
Q Consensus       166 ~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i  245 (495)
                      ..+++|++|++++|.+...+....+++|++|+++++.+++-.  . +.++++|++|++++|..-....+..+++|+.|++
T Consensus        43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L  119 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL  119 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred             hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcCCCChhhccCCCCCEEEC
Confidence            346889999999998876666788999999999999984322  2 7899999999999997544334667899999999


Q ss_pred             cccc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcc
Q 011021          246 RSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK  324 (495)
Q Consensus       246 ~~c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~  324 (495)
                      ++|. ..+.. ...+++|+.|+++.+.....  ..++.+++|+.|+++++.+++...   +..+++|+.|++++|. ++.
T Consensus       120 ~~n~i~~~~~-l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~-i~~  192 (291)
T 1h6t_A          120 EHNGISDING-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNH-ISD  192 (291)
T ss_dssp             TTSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCB
T ss_pred             CCCcCCCChh-hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCc-CCC
Confidence            9986 22211 12578999999996554332  356789999999999999877322   6789999999999883 233


Q ss_pred             cc--ccccccceEEeccCC
Q 011021          325 IK--ISSNQLKNLLFRSCK  341 (495)
Q Consensus       325 i~--~~~~~L~~L~l~~c~  341 (495)
                      ++  ...++|+.|++.+++
T Consensus       193 l~~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          193 LRALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             CGGGTTCTTCSEEEEEEEE
T ss_pred             ChhhccCCCCCEEECcCCc
Confidence            32  245677777776653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.99  E-value=2.8e-10  Score=101.70  Aligned_cols=148  Identities=16%  Similarity=0.132  Sum_probs=86.4

Q ss_pred             cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEE
Q 011021          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L  221 (495)
                      .++++|+  +..+.  ...+| .+..+++|++|++++|.+........+++|++|+++++.+++..... +..+++|++|
T Consensus        44 ~~L~~L~--l~~n~--i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L  117 (197)
T 4ezg_A           44 NSLTYIT--LANIN--VTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLL  117 (197)
T ss_dssp             HTCCEEE--EESSC--CSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEE
T ss_pred             CCccEEe--ccCCC--ccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEE
Confidence            4566666  43322  12444 45566777777777776555445566777777777777664322222 4567777777


Q ss_pred             EEEecCCCc--ceeecCCCCccEEEeccccccceEEE--EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccC
Q 011021          222 CFSNCWGLK--HLCVSKASKLKIMEIRSFSEEIEIVE--ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA  297 (495)
Q Consensus       222 ~L~~c~~l~--~~~i~~l~~L~~L~i~~c~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  297 (495)
                      ++++|....  ...+..+++|+.|++++|. .+..+.  ..+++|+.|+++++.... .. .+..+++|+.|+++++.+.
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~-~i~~~~~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNG-AITDIMPLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCT-BCCCCGGGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCC-CccccHhhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence            777765432  1223456777777777764 122221  246777888777544422 11 5667899999999988765


Q ss_pred             h
Q 011021          298 D  298 (495)
Q Consensus       298 ~  298 (495)
                      +
T Consensus       195 ~  195 (197)
T 4ezg_A          195 G  195 (197)
T ss_dssp             -
T ss_pred             C
Confidence            3

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.98  E-value=2.5e-10  Score=119.52  Aligned_cols=166  Identities=16%  Similarity=0.070  Sum_probs=114.6

Q ss_pred             HcCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccE
Q 011021          141 ENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED  220 (495)
Q Consensus       141 ~~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  220 (495)
                      ..+++.|.  +..+.  ...+| .+..+++|+.|+|++|.+...+.+..+++|+.|+|++|.+.+  ++ .+..+++|+.
T Consensus        42 L~~L~~L~--l~~n~--i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~  113 (605)
T 1m9s_A           42 LNSIDQII--ANNSD--IKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKS  113 (605)
T ss_dssp             HTTCCCCB--CTTCC--CCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCE
T ss_pred             CCCCCEEE--CcCCC--CCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC--Ch-hhccCCCCCE
Confidence            35777777  54322  23344 467788999999999887765557788999999999988843  22 3678899999


Q ss_pred             EEEEecCCCcceeecCCCCccEEEecccc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChH
Q 011021          221 LCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN  299 (495)
Q Consensus       221 L~L~~c~~l~~~~i~~l~~L~~L~i~~c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  299 (495)
                      |+|++|.......+..+++|+.|++++|. ..+ .....+++|+.|+++.+......+  +..+++|+.|+|++|.+++-
T Consensus       114 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l  190 (605)
T 1m9s_A          114 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL  190 (605)
T ss_dssp             EECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred             EEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC
Confidence            99988875433345567889999988885 222 111256788888888555433222  66788888888888877662


Q ss_pred             HHHHHhhcCCCCcEEEecCCC
Q 011021          300 EFNHLISKFPSLEDLFVTRCC  320 (495)
Q Consensus       300 ~~~~l~~~~~~L~~L~L~~~~  320 (495)
                         ..+..+++|+.|+|.+|.
T Consensus       191 ---~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          191 ---RALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             ---GGGTTCTTCSEEECCSEE
T ss_pred             ---hHHccCCCCCEEEccCCc
Confidence               225677888888888763

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.98  E-value=6.2e-10  Score=117.67  Aligned_cols=267  Identities=14%  Similarity=0.107  Sum_probs=142.6

Q ss_pred             cceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEecccc
Q 011021          170 SVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS  249 (495)
Q Consensus       170 ~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c~  249 (495)
                      +++.+.+.++.+..........+|+.|++.++.+..-.    ...++.|+.+.+..+..........+++|+.|++..+.
T Consensus       307 ~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~  382 (635)
T 4g8a_A          307 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP----TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG  382 (635)
T ss_dssp             TCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCC----CCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSC
T ss_pred             ccccccccccccccccccccchhhhhhhcccccccCcC----cccchhhhhcccccccCCCCcccccccccccchhhccc
Confidence            34444444433322222333445555555555442110    12345555555555543333333345677777766553


Q ss_pred             ccceEEE------EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCc
Q 011021          250 EEIEIVE------ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG  323 (495)
Q Consensus       250 ~~l~~~~------~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~  323 (495)
                        +....      ...++|+.+++..++. ......+..+++|+.+++.++.............+++++.+++..+....
T Consensus       383 --l~~~~~~~~~~~~~~~L~~L~~~~~~~-~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~  459 (635)
T 4g8a_A          383 --LSFKGCCSQSDFGTISLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV  459 (635)
T ss_dssp             --CBEEEECCHHHHSCSCCCEEECCSCSE-EEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEE
T ss_pred             --cccccccccchhhhhhhhhhhcccccc-ccccccccccccccchhhhhcccccccccccccccccccccccccccccc
Confidence              11111      1345666666653222 11222344577788887776654332222234567788888887763322


Q ss_pred             c---ccccccccceEEeccCCCccEEe----ccCCccceeeecccccc----eEeecCCCCceEEEEEecccchhhhcch
Q 011021          324 K---IKISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP----IISINVPCPWKVSFVCKGVLNTHWYLKL  392 (495)
Q Consensus       324 ~---i~~~~~~L~~L~l~~c~~l~~l~----~~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~l  392 (495)
                      .   .....+.++.|.+.++.....+.    -.+++|+.++++++.+.    ..+.++++|++|+++.+..     ....
T Consensus       460 ~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l-----~~l~  534 (635)
T 4g8a_A          460 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-----FSLD  534 (635)
T ss_dssp             CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC-----CBCC
T ss_pred             ccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcC-----CCCC
Confidence            1   12235678888887776443221    23678888888887743    3456788899998854332     1222


Q ss_pred             HHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCC--CccHHHHHHHH
Q 011021          393 KKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVP--LSDYETLLDCV  453 (495)
Q Consensus       393 ~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~--~~~~~~l~~~l  453 (495)
                      +..++++++|+.|+++...... ..|+.+..+    |++|+.|++++|+-  .-...++...+
T Consensus       535 ~~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~l----~~~L~~L~L~~Np~~C~C~~~~~~~wl  592 (635)
T 4g8a_A          535 TFPYKCLNSLQVLDYSLNHIMT-SKKQELQHF----PSSLAFLNLTQNDFACTCEHQSFLQWI  592 (635)
T ss_dssp             CGGGTTCTTCCEEECTTSCCCB-CCSSCTTCC----CTTCCEEECTTCCBCCSGGGHHHHHHH
T ss_pred             hhHHhCCCCCCEEECCCCcCCC-CCHHHHHhh----hCcCCEEEeeCCCCcccCCcHHHHHHH
Confidence            4567888899976664332222 345555443    36789999998873  33344444444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.97  E-value=4e-10  Score=107.12  Aligned_cols=150  Identities=14%  Similarity=0.041  Sum_probs=77.6

Q ss_pred             cCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEec
Q 011021          167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIR  246 (495)
Q Consensus       167 ~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~  246 (495)
                      .+++++.++++++.+...+ ..-.++++.|+|+++.++.-. ...+.+++.|++|++++|..........+++|+.|+++
T Consensus         8 ~l~~l~~l~~~~~~l~~ip-~~~~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls   85 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTALP-PDLPKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLS   85 (290)
T ss_dssp             CSTTCCEEECTTSCCSSCC-SCCCTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECC
T ss_pred             ccCCccEEECCCCCCCcCC-CCCCCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECC
Confidence            3456666666666655433 112356677777766663211 12245666777777766653221122345666666666


Q ss_pred             ccc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCC
Q 011021          247 SFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (495)
Q Consensus       247 ~c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~  319 (495)
                      ++. ..+.......++|+.|+++.+......+..++++++|+.|+++++.++.- ....+..+++|+.|++++|
T Consensus        86 ~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTS
T ss_pred             CCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCCC
Confidence            654 11111111345666666664433222223345666777777777665531 1122345667777777765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.96  E-value=3.8e-10  Score=118.06  Aligned_cols=166  Identities=16%  Similarity=0.126  Sum_probs=119.9

Q ss_pred             ccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEe
Q 011021          166 FSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEI  245 (495)
Q Consensus       166 ~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i  245 (495)
                      ..+++|+.|++++|.+...+.+..+++|+.|+|+++.+.+-.  . +..+++|+.|+|++|.......+..+++|+.|++
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L  116 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSL  116 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCG--G-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEEC
T ss_pred             hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCCh--h-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEe
Confidence            346788999999988876666788999999999999884321  1 7789999999999986543334557889999999


Q ss_pred             cccc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcc
Q 011021          246 RSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK  324 (495)
Q Consensus       246 ~~c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~  324 (495)
                      ++|. ..+.. ...+++|+.|+++.+.....  ..++.+++|+.|+|++|.+.+...   +..+++|+.|+|++|.. ..
T Consensus       117 s~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i-~~  189 (605)
T 1m9s_A          117 EHNGISDING-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHI-SD  189 (605)
T ss_dssp             TTSCCCCCGG-GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCC-CB
T ss_pred             cCCCCCCCcc-ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCC-CC
Confidence            9886 22211 12578999999985554332  356678999999999988876322   57789999999998732 22


Q ss_pred             cc--ccccccceEEeccCC
Q 011021          325 IK--ISSNQLKNLLFRSCK  341 (495)
Q Consensus       325 i~--~~~~~L~~L~l~~c~  341 (495)
                      ++  ..+++|+.|++..++
T Consensus       190 l~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          190 LRALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             CGGGTTCTTCSEEECCSEE
T ss_pred             ChHHccCCCCCEEEccCCc
Confidence            32  245678888777664

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.93  E-value=5.4e-11  Score=117.07  Aligned_cols=148  Identities=11%  Similarity=0.077  Sum_probs=90.3

Q ss_pred             EEEEeccccCCCC-Ccc-CCCCCcEEEeeeEeeChH---HHHHHHhcCC-CccEEEEEecCCCcc--eeecC-----CCC
Q 011021          173 NLRLVWCRLEQPF-DSI-MLCSLKKLTLERVCLDEQ---MVQKLASECP-LLEDLCFSNCWGLKH--LCVSK-----ASK  239 (495)
Q Consensus       173 ~L~L~~c~l~~~~-~~~-~l~~L~~L~L~~~~~~~~---~l~~l~~~~p-~Le~L~L~~c~~l~~--~~i~~-----l~~  239 (495)
                      .++++++.+.... .+. ..++|++|+|++|.+++.   .+...+.++| .|++|++++|..-..  ..+..     .++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            3566666665433 233 345599999999998443   3335567888 999999999963221  11222     288


Q ss_pred             ccEEEecccc-ccceE--EE---EeC-CcceEEEEeecCCCCceeEE----eec-CCCccEEEeeccccChHH---HHHH
Q 011021          240 LKIMEIRSFS-EEIEI--VE---ISV-PSLQQLTLLFYGARRPRVVE----VAR-SPHLKKLDLVSVYFADNE---FNHL  304 (495)
Q Consensus       240 L~~L~i~~c~-~~l~~--~~---~~~-p~L~~L~l~~~~~~~~~~~~----~~~-~~~L~~L~l~~~~~~~~~---~~~l  304 (495)
                      |++|++++|. .....  +.   ... ++|++|+++++.........    +.. .++|++|++++|.+++..   +...
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            9999999886 11111  00   112 68888888855442221111    122 358888888888877532   3333


Q ss_pred             hhcCC-CCcEEEecCCC
Q 011021          305 ISKFP-SLEDLFVTRCC  320 (495)
Q Consensus       305 ~~~~~-~L~~L~L~~~~  320 (495)
                      +..++ +|+.|++++|.
T Consensus       162 l~~~~~~L~~L~Ls~n~  178 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNN  178 (362)
T ss_dssp             HHTSCTTCCEEECTTSC
T ss_pred             HhcCCccccEeeecCCC
Confidence            34455 88888888873

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.91  E-value=5.1e-10  Score=106.39  Aligned_cols=154  Identities=19%  Similarity=0.180  Sum_probs=104.4

Q ss_pred             ccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce--e
Q 011021          158 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--C  233 (495)
Q Consensus       158 ~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~--~  233 (495)
                      -..+|..+.  +++++|++++|.+....  .+..+++|++|+|+++.++.-..   ...++.|++|++++|... .+  .
T Consensus        22 l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l~-~l~~~   95 (290)
T 1p9a_G           22 LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQLQ-SLPLL   95 (290)
T ss_dssp             CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSCCS-SCCCC
T ss_pred             CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCcCC-cCchh
Confidence            345665553  67889999988875433  56778899999998887732111   157888999999888642 22  2


Q ss_pred             ecCCCCccEEEeccccccceEEE----EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCC
Q 011021          234 VSKASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFP  309 (495)
Q Consensus       234 i~~l~~L~~L~i~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~  309 (495)
                      +.++++|+.|+++++.  +..+.    -.+++|++|+++.+.........+..+++|+.|+++++.++.- ....+..++
T Consensus        96 ~~~l~~L~~L~l~~N~--l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~  172 (290)
T 1p9a_G           96 GQTLPALTVLDVSFNR--LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLE  172 (290)
T ss_dssp             TTTCTTCCEEECCSSC--CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC-CTTTTTTCT
T ss_pred             hccCCCCCEEECCCCc--CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc-CHHHhcCcC
Confidence            3467889999988875  22222    2467899999885544332222345788999999999887641 223345688


Q ss_pred             CCcEEEecCCC
Q 011021          310 SLEDLFVTRCC  320 (495)
Q Consensus       310 ~L~~L~L~~~~  320 (495)
                      +|+.|++++|.
T Consensus       173 ~L~~L~L~~N~  183 (290)
T 1p9a_G          173 NLDTLLLQENS  183 (290)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEECCCCc
Confidence            99999998873

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.90  E-value=3.4e-10  Score=105.24  Aligned_cols=157  Identities=13%  Similarity=0.076  Sum_probs=88.0

Q ss_pred             cccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcc--e
Q 011021          157 TVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--L  232 (495)
Q Consensus       157 ~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~--~  232 (495)
                      ....+|..+.  +++++|+|++|.+....  .+.++++|++|+|+++.++.. ....+.+++.|++|++++|.....  .
T Consensus        25 ~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~  101 (251)
T 3m19_A           25 SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQLASLPLG  101 (251)
T ss_dssp             CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred             CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCcccccChh
Confidence            3445665543  57888888888776543  466788888888888877321 122356778888888888764221  1


Q ss_pred             eecCCCCccEEEeccccccceEEE----EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcC
Q 011021          233 CVSKASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKF  308 (495)
Q Consensus       233 ~i~~l~~L~~L~i~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~  308 (495)
                      .+.++++|+.|+++++.  +..+.    ...++|+.|+++.+......+..++.+++|+.|+++++.++... ...+..+
T Consensus       102 ~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l  178 (251)
T 3m19_A          102 VFDHLTQLDKLYLGGNQ--LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP-HGAFDRL  178 (251)
T ss_dssp             TTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTC
T ss_pred             HhcccCCCCEEEcCCCc--CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC-HHHHhCC
Confidence            22356777777777664  22111    12455666665533332211112345556666666655554311 1123345


Q ss_pred             CCCcEEEecCC
Q 011021          309 PSLEDLFVTRC  319 (495)
Q Consensus       309 ~~L~~L~L~~~  319 (495)
                      ++|+.|++.+|
T Consensus       179 ~~L~~L~l~~N  189 (251)
T 3m19_A          179 GKLQTITLFGN  189 (251)
T ss_dssp             TTCCEEECCSC
T ss_pred             CCCCEEEeeCC
Confidence            56666666554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.88  E-value=4.6e-10  Score=105.92  Aligned_cols=172  Identities=15%  Similarity=0.059  Sum_probs=109.4

Q ss_pred             cCceEeEEEeecCCCcccccCc-ccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCc
Q 011021          142 NGVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  218 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L  218 (495)
                      .++++|+  +..+.  -..++. .+..+++|++|++++|.+...+  .+.++++|++|+++++.++... ...+.+++.|
T Consensus        28 ~~l~~L~--ls~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L  102 (276)
T 2z62_A           28 FSTKNLD--LSFNP--LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSL  102 (276)
T ss_dssp             TTCCEEE--CTTCC--CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTC
T ss_pred             CCccEEE--CCCCc--ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC-hhhhcCCccc
Confidence            3677777  54322  233343 5666899999999999876443  4678899999999999874221 1235688999


Q ss_pred             cEEEEEecCCCc--ceeecCCCCccEEEecccc-cc--ceEEEEeCCcceEEEEeecCCCCceeEEeecCCCcc----EE
Q 011021          219 EDLCFSNCWGLK--HLCVSKASKLKIMEIRSFS-EE--IEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLK----KL  289 (495)
Q Consensus       219 e~L~L~~c~~l~--~~~i~~l~~L~~L~i~~c~-~~--l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L  289 (495)
                      ++|++.+|....  ...+.++++|+.|+++++. ..  +.......++|+.|+++++.........+..+++|+    .|
T Consensus       103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L  182 (276)
T 2z62_A          103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL  182 (276)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEE
T ss_pred             cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceee
Confidence            999999886432  2346678999999999885 11  111112568999999985544321122333444555    77


Q ss_pred             EeeccccChHHHHHHhhcCCCCcEEEecCCC
Q 011021          290 DLVSVYFADNEFNHLISKFPSLEDLFVTRCC  320 (495)
Q Consensus       290 ~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  320 (495)
                      +++++.++....  ......+|+.|++++|.
T Consensus       183 ~ls~n~l~~~~~--~~~~~~~L~~L~L~~n~  211 (276)
T 2z62_A          183 DLSLNPMNFIQP--GAFKEIRLKELALDTNQ  211 (276)
T ss_dssp             ECCSSCCCEECT--TSSCSCCEEEEECCSSC
T ss_pred             ecCCCcccccCc--cccCCCcccEEECCCCc
Confidence            787777654211  11233478888888764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.85  E-value=2e-09  Score=105.18  Aligned_cols=184  Identities=13%  Similarity=0.047  Sum_probs=106.6

Q ss_pred             ccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee--
Q 011021          158 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC--  233 (495)
Q Consensus       158 ~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~--  233 (495)
                      -..+|..+  .+++++|+|++|.+...+  .+.++++|++|+|++|.+.+..-...+.+++.|+++.+.++..+..+.  
T Consensus        21 Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~   98 (350)
T 4ay9_X           21 VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE   98 (350)
T ss_dssp             CCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred             CCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence            34667655  367899999999876544  467899999999998875211111235678888877776666665543  


Q ss_pred             -ecCCCCccEEEecccc-ccceEE-EEeCCcceEEEEeecCCCCceeE-EeecC-CCccEEEeeccccChHHHHHHhhcC
Q 011021          234 -VSKASKLKIMEIRSFS-EEIEIV-EISVPSLQQLTLLFYGARRPRVV-EVARS-PHLKKLDLVSVYFADNEFNHLISKF  308 (495)
Q Consensus       234 -i~~l~~L~~L~i~~c~-~~l~~~-~~~~p~L~~L~l~~~~~~~~~~~-~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~  308 (495)
                       +.++++|+.|++.++. ..+... .....++..+++..+......+. .+..+ ..++.|+++++.++.  +.......
T Consensus        99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~--i~~~~f~~  176 (350)
T 4ay9_X           99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--IHNSAFNG  176 (350)
T ss_dssp             SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--ECTTSSTT
T ss_pred             hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC--CChhhccc
Confidence             3467888888888875 111111 12344566666652221111111 12222 357777887777654  11111234


Q ss_pred             CCCcEEEecCCCCCccccc----cccccceEEeccCCCccEE
Q 011021          309 PSLEDLFVTRCCLPGKIKI----SSNQLKNLLFRSCKYLKVI  346 (495)
Q Consensus       309 ~~L~~L~L~~~~~~~~i~~----~~~~L~~L~l~~c~~l~~l  346 (495)
                      ++|+.|.+.++..++.++.    ..++|+.|+++++ +++.+
T Consensus       177 ~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~l  217 (350)
T 4ay9_X          177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSL  217 (350)
T ss_dssp             EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCC
T ss_pred             cchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCcc
Confidence            5677777776666665543    2456666666654 24443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.84  E-value=1e-09  Score=102.72  Aligned_cols=145  Identities=13%  Similarity=0.078  Sum_probs=86.8

Q ss_pred             cccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEE
Q 011021          165 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME  244 (495)
Q Consensus       165 l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~  244 (495)
                      +..+++|++|++++|.+...+....+++|++|+|+++.+++-.  . +.+++.|++|++++|..-....+.. ++|+.|+
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~  112 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLF  112 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEE
T ss_pred             hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCccCCcCcccc-CcccEEE
Confidence            4456778888888887765555667888888888888773221  1 6678888888888875422112222 6777777


Q ss_pred             ecccc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCC
Q 011021          245 IRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (495)
Q Consensus       245 i~~c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~  319 (495)
                      +++|. ..+.. ...+++|+.|+++++.....  ..++.+++|+.|+++++.+++.   ..+..+++|+.|+++++
T Consensus       113 L~~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          113 LDNNELRDTDS-LIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             CCSSCCSBSGG-GTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEE
T ss_pred             ccCCccCCChh-hcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCC
Confidence            77664 11111 01345666666663333221  1345667777777777666653   33455667777777665

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.79  E-value=2.5e-09  Score=73.02  Aligned_cols=39  Identities=23%  Similarity=0.349  Sum_probs=33.4

Q ss_pred             CCCcCCCCChHHHHHHhcCCChhHHHhhhcccccchhhh
Q 011021           16 AMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLY   54 (495)
Q Consensus        16 ~~d~is~LPd~vL~~Ils~L~~~d~~rts~lSkrWr~lw   54 (495)
                      +.+.++.||+|++.+||+|||.+|+++++.|||+|+.+.
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~   43 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   43 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            456789999999999999999999999999999999763

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.76  E-value=1.5e-09  Score=97.75  Aligned_cols=89  Identities=20%  Similarity=0.090  Sum_probs=58.0

Q ss_pred             ccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce--e
Q 011021          158 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--C  233 (495)
Q Consensus       158 ~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~--~  233 (495)
                      ...+|..+  .++|++|+++++.+...+  .+..+++|++|+++++.++. .....+.+++.|++|++++|......  .
T Consensus        19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~   95 (208)
T 2o6s_A           19 RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQSLPNGV   95 (208)
T ss_dssp             CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCCcCCccCHhH
Confidence            34555544  357899999998876544  35678889999998887742 11223567888888888887532211  1


Q ss_pred             ecCCCCccEEEecccc
Q 011021          234 VSKASKLKIMEIRSFS  249 (495)
Q Consensus       234 i~~l~~L~~L~i~~c~  249 (495)
                      +.++++|+.|+++++.
T Consensus        96 ~~~l~~L~~L~L~~N~  111 (208)
T 2o6s_A           96 FDKLTQLKELALNTNQ  111 (208)
T ss_dssp             TTTCTTCCEEECCSSC
T ss_pred             hcCccCCCEEEcCCCc
Confidence            3356677777776663

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.71  E-value=2.6e-09  Score=92.60  Aligned_cols=128  Identities=19%  Similarity=0.135  Sum_probs=80.6

Q ss_pred             CCcceEEEEeccccC--CCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee--ecCCCCccE
Q 011021          168 ANSVTNLRLVWCRLE--QPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKASKLKI  242 (495)
Q Consensus       168 ~~~L~~L~L~~c~l~--~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~--i~~l~~L~~  242 (495)
                      .++|++|++++|.+.  ..+ .+..+++|+.|++++|.++.-   ..+..+++|++|++++|.......  ...+++|+.
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            367888888888876  333 446788888888888877432   335667777777777775432111  112444555


Q ss_pred             EEeccccccceEEEEeCCcceEEEEeecCCCC-ceeEEeecCCCccEEEeeccccChHHH--HHHhhcCCCCcEEEecCC
Q 011021          243 MEIRSFSEEIEIVEISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDLVSVYFADNEF--NHLISKFPSLEDLFVTRC  319 (495)
Q Consensus       243 L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~~L~~L~L~~~  319 (495)
                      |++++|.                      ... +....++.+++|+.|+++++.++....  ...+..+++|+.|++.+|
T Consensus       100 L~Ls~N~----------------------l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A          100 LNLSGNK----------------------LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             EECBSSS----------------------CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             EeccCCc----------------------cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence            5444442                      211 111345578889999999888765321  235677899999998887


Q ss_pred             C
Q 011021          320 C  320 (495)
Q Consensus       320 ~  320 (495)
                      .
T Consensus       158 ~  158 (168)
T 2ell_A          158 E  158 (168)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.71  E-value=1.7e-09  Score=101.21  Aligned_cols=143  Identities=11%  Similarity=0.032  Sum_probs=104.1

Q ss_pred             CCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEecc
Q 011021          168 ANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRS  247 (495)
Q Consensus       168 ~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~  247 (495)
                      ..+++.++++++.+........+++|++|+++++.++.  ++ -+..+++|++|++++|..-....+.++++|+.|++++
T Consensus        18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCS
T ss_pred             HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCC
Confidence            45566667777766654456789999999999998843  22 3678999999999999754333367889999999999


Q ss_pred             cc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCC
Q 011021          248 FS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC  320 (495)
Q Consensus       248 c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  320 (495)
                      |. ..+..+..  ++|+.|+++++.....  ..++.+++|+.|+++++.+++-   ..+..+++|+.|++++|.
T Consensus        95 N~l~~l~~~~~--~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~---~~l~~l~~L~~L~L~~N~  161 (263)
T 1xeu_A           95 NRLKNLNGIPS--ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI---VMLGFLSKLEVLDLHGNE  161 (263)
T ss_dssp             SCCSCCTTCCC--SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC---GGGGGCTTCCEEECTTSC
T ss_pred             CccCCcCcccc--CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC---hHHccCCCCCEEECCCCc
Confidence            86 22222222  8899999985554332  2466788999999999888763   135678999999998873

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.68  E-value=7.8e-09  Score=95.95  Aligned_cols=148  Identities=19%  Similarity=0.141  Sum_probs=105.1

Q ss_pred             CceEeEEEeecCCCccccc-CcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCcc
Q 011021          143 GVRELDFENITDENTVYTL-PQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  219 (495)
Q Consensus       143 ~l~~L~l~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  219 (495)
                      +++.|+  +..+.  ...+ +..+..+++|++|+|++|.+...+  .+..+++|++|+|+++.++.- ....+.++++|+
T Consensus        36 ~l~~L~--L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~  110 (251)
T 3m19_A           36 DTEKLD--LQSTG--LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL-PLGVFDHLTQLD  110 (251)
T ss_dssp             TCCEEE--CTTSC--CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCC
T ss_pred             CCCEEE--ccCCC--cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc-ChhHhcccCCCC
Confidence            567777  54322  2223 334666899999999999886654  467899999999999988421 123357899999


Q ss_pred             EEEEEecCCCccee---ecCCCCccEEEeccccccceEEE---E-eCCcceEEEEeecCCCCceeEEeecCCCccEEEee
Q 011021          220 DLCFSNCWGLKHLC---VSKASKLKIMEIRSFSEEIEIVE---I-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLV  292 (495)
Q Consensus       220 ~L~L~~c~~l~~~~---i~~l~~L~~L~i~~c~~~l~~~~---~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  292 (495)
                      +|++++|.. ..+.   +.++++|+.|+++++.  +..+.   + ..++|+.|+++++......+..+..+++|+.|+++
T Consensus       111 ~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  187 (251)
T 3m19_A          111 KLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQ--LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF  187 (251)
T ss_dssp             EEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             EEEcCCCcC-CCcChhHhccCCcccEEECcCCc--CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence            999999864 3322   3467999999999885  32222   1 46899999999665543333346678999999999


Q ss_pred             ccccCh
Q 011021          293 SVYFAD  298 (495)
Q Consensus       293 ~~~~~~  298 (495)
                      +|.+..
T Consensus       188 ~N~~~c  193 (251)
T 3m19_A          188 GNQFDC  193 (251)
T ss_dssp             SCCBCT
T ss_pred             CCceeC
Confidence            998765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.66  E-value=3.3e-08  Score=102.38  Aligned_cols=136  Identities=17%  Similarity=0.071  Sum_probs=86.9

Q ss_pred             HcCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccE
Q 011021          141 ENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED  220 (495)
Q Consensus       141 ~~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  220 (495)
                      ..+++.|+  +..+.  ...+|..++  ++|++|+|++|.+...+  ..+++|++|+|++|.++.  ++. +.+  +|++
T Consensus        58 ~~~L~~L~--Ls~n~--L~~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~  124 (571)
T 3cvr_A           58 INQFSELQ--LNRLN--LSSLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LPA--SLKH  124 (571)
T ss_dssp             HTTCSEEE--CCSSC--CSCCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CCT--TCCE
T ss_pred             cCCccEEE--eCCCC--CCccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hhc--CCCE
Confidence            35788888  54332  234776554  78899999988877544  567889999998888743  332 222  8888


Q ss_pred             EEEEecCCCcceeecCCCCccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccC
Q 011021          221 LCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA  297 (495)
Q Consensus       221 L~L~~c~~l~~~~i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  297 (495)
                      |++++|..- .++. .+++|+.|++++|.  +..+....++|+.|+++++.... .+. +.  ++|+.|++++|.++
T Consensus       125 L~Ls~N~l~-~lp~-~l~~L~~L~Ls~N~--l~~lp~~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          125 LDVDNNQLT-MLPE-LPALLEYINADNNQ--LTMLPELPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             EECCSSCCS-CCCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred             EECCCCcCC-CCCC-cCccccEEeCCCCc--cCcCCCcCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence            888888642 2333 56788888888775  22222245677777777544322 222 32  67777777777665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.66  E-value=1.3e-09  Score=92.55  Aligned_cols=125  Identities=18%  Similarity=0.100  Sum_probs=71.9

Q ss_pred             CCcceEEEEeccccC--CCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee--ecCCCCccE
Q 011021          168 ANSVTNLRLVWCRLE--QPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKASKLKI  242 (495)
Q Consensus       168 ~~~L~~L~L~~c~l~--~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~--i~~l~~L~~  242 (495)
                      .++|++|++++|.+.  ..+ .+..+++|+.|++++|.+++-   ..+..++.|++|++++|......+  ..++++|+.
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            367888888888776  222 446778888888888877432   335566777777777665322111  112344444


Q ss_pred             EEeccccccceEEEEeCCcceEEEEeecCCCC-ceeEEeecCCCccEEEeeccccChHHH--HHHhhcCCCCcEEEec
Q 011021          243 MEIRSFSEEIEIVEISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDLVSVYFADNEF--NHLISKFPSLEDLFVT  317 (495)
Q Consensus       243 L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~~L~~L~L~  317 (495)
                      |++++|.                      ... +.+..++.+++|+.|++++|.+++...  ...+..+++|+.|+++
T Consensus        93 L~ls~N~----------------------i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           93 LNLSGNK----------------------IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EECTTSC----------------------CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EECCCCc----------------------CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            4444432                      211 111234567777777777777655221  2345567777777664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.64  E-value=2.1e-08  Score=86.77  Aligned_cols=105  Identities=21%  Similarity=0.063  Sum_probs=78.8

Q ss_pred             cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEE
Q 011021          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L  221 (495)
                      .++++|+  +..+......+|..+..+++|++|++++|.+.....+..+++|++|++++|.+... ++..+.++++|++|
T Consensus        24 ~~L~~L~--l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELV--LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEE--CCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEE
T ss_pred             ccCCEEE--CCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEE
Confidence            4678888  55433322377887788999999999999887655677899999999999998532 45567789999999


Q ss_pred             EEEecCCCcc---eeecCCCCccEEEecccc
Q 011021          222 CFSNCWGLKH---LCVSKASKLKIMEIRSFS  249 (495)
Q Consensus       222 ~L~~c~~l~~---~~i~~l~~L~~L~i~~c~  249 (495)
                      ++++|.....   ..+..+++|+.|++++|.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~  131 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCE  131 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCc
Confidence            9999964331   234466778888777764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.61  E-value=1.5e-08  Score=92.58  Aligned_cols=136  Identities=16%  Similarity=0.046  Sum_probs=85.4

Q ss_pred             cccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee-
Q 011021          157 TVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC-  233 (495)
Q Consensus       157 ~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~-  233 (495)
                      ....+|..+.  ++|++|+|++|.+....  .+..+++|++|+|+++.++.- ....+.++++|+.|++++|.. ..+. 
T Consensus        30 ~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~l-~~l~~  105 (229)
T 3e6j_A           30 RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQL-TVLPS  105 (229)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCT
T ss_pred             CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCcC-CccCh
Confidence            3456665443  78999999998876543  467889999999999887321 112356788888888888853 2222 


Q ss_pred             --ecCCCCccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCC
Q 011021          234 --VSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSL  311 (495)
Q Consensus       234 --i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L  311 (495)
                        +..+++|+.|+++++.  +.                     ..+..+..+++|+.|++++|.++.-. ...+..+++|
T Consensus       106 ~~~~~l~~L~~L~Ls~N~--l~---------------------~lp~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L  161 (229)
T 3e6j_A          106 AVFDRLVHLKELFMCCNK--LT---------------------ELPRGIERLTHLTHLALDQNQLKSIP-HGAFDRLSSL  161 (229)
T ss_dssp             TTTTTCTTCCEEECCSSC--CC---------------------SCCTTGGGCTTCSEEECCSSCCCCCC-TTTTTTCTTC
T ss_pred             hHhCcchhhCeEeccCCc--cc---------------------ccCcccccCCCCCEEECCCCcCCccC-HHHHhCCCCC
Confidence              2345666666666553  11                     12222346677777777777665411 1234566777


Q ss_pred             cEEEecCCC
Q 011021          312 EDLFVTRCC  320 (495)
Q Consensus       312 ~~L~L~~~~  320 (495)
                      +.|++.+++
T Consensus       162 ~~L~l~~N~  170 (229)
T 3e6j_A          162 THAYLFGNP  170 (229)
T ss_dssp             CEEECTTSC
T ss_pred             CEEEeeCCC
Confidence            777777764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.61  E-value=4.3e-08  Score=84.41  Aligned_cols=92  Identities=10%  Similarity=0.124  Sum_probs=73.8

Q ss_pred             ccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEe-eChHHHHHHHhc---CCCccEEEEEecCCCcc
Q 011021          158 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVC-LDEQMVQKLASE---CPLLEDLCFSNCWGLKH  231 (495)
Q Consensus       158 ~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~---~p~Le~L~L~~c~~l~~  231 (495)
                      ...+|..-.....|++|++++|.++...  ...+|++|++|+|++|. +++.++..+...   |+.|++|+|++|..+++
T Consensus        50 ~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD  129 (176)
T 3e4g_A           50 YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD  129 (176)
T ss_dssp             GGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred             cccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence            4566764444568999999999976654  45789999999999996 599999987753   78999999999998776


Q ss_pred             e---eecCCCCccEEEecccc
Q 011021          232 L---CVSKASKLKIMEIRSFS  249 (495)
Q Consensus       232 ~---~i~~l~~L~~L~i~~c~  249 (495)
                      .   .+.++++|++|++++|.
T Consensus       130 ~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          130 KGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHHHHGGGCTTCCEEEEESCT
T ss_pred             HHHHHHhcCCCCCEEECCCCC
Confidence            3   33467899999999887

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.58  E-value=1.9e-08  Score=85.19  Aligned_cols=105  Identities=21%  Similarity=0.135  Sum_probs=79.6

Q ss_pred             cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEE
Q 011021          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L  221 (495)
                      .++++|+  +..+......+|..+..+++|++|++++|.+.....+..+++|++|++++|.++.. ++..+.++++|++|
T Consensus        17 ~~l~~L~--l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELV--LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEE--CTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEE
T ss_pred             ccCeEEE--ccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEE
Confidence            4677777  54433222367887788999999999999887655677899999999999999542 55667789999999


Q ss_pred             EEEecCCCcc---eeecCCCCccEEEecccc
Q 011021          222 CFSNCWGLKH---LCVSKASKLKIMEIRSFS  249 (495)
Q Consensus       222 ~L~~c~~l~~---~~i~~l~~L~~L~i~~c~  249 (495)
                      ++++|...+.   ..+.++++|+.|++++|.
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~  124 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCE  124 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence            9999975331   234567888888888775

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.55  E-value=2.4e-08  Score=90.64  Aligned_cols=136  Identities=13%  Similarity=0.093  Sum_probs=80.7

Q ss_pred             cccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee-
Q 011021          157 TVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC-  233 (495)
Q Consensus       157 ~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~-  233 (495)
                      ....+|..+.  ++|+.|+++++.+...+  .+..+++|++|+|+++.++.- ....+.++++|++|+|++|... .+. 
T Consensus        22 ~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~-~l~~   97 (220)
T 2v9t_B           22 GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNKIT-ELPK   97 (220)
T ss_dssp             CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSCCC-CCCT
T ss_pred             CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCcCC-ccCH
Confidence            3445666543  67899999998876443  567788999999988877321 1223567888888888887532 222 


Q ss_pred             --ecCCCCccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCC
Q 011021          234 --VSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSL  311 (495)
Q Consensus       234 --i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L  311 (495)
                        +.++++|+.|+++++.                      .....+..+..+++|+.|++++|.++... ...+..+++|
T Consensus        98 ~~f~~l~~L~~L~L~~N~----------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L  154 (220)
T 2v9t_B           98 SLFEGLFSLQLLLLNANK----------------------INCLRVDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAI  154 (220)
T ss_dssp             TTTTTCTTCCEEECCSSC----------------------CCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTC
T ss_pred             hHccCCCCCCEEECCCCC----------------------CCEeCHHHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCC
Confidence              2345666666666653                      11111122334566666666666554311 1123445666


Q ss_pred             cEEEecCC
Q 011021          312 EDLFVTRC  319 (495)
Q Consensus       312 ~~L~L~~~  319 (495)
                      +.|++.+|
T Consensus       155 ~~L~L~~N  162 (220)
T 2v9t_B          155 QTMHLAQN  162 (220)
T ss_dssp             CEEECCSS
T ss_pred             CEEEeCCC
Confidence            66666665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.53  E-value=5.8e-09  Score=93.10  Aligned_cols=133  Identities=16%  Similarity=0.158  Sum_probs=81.2

Q ss_pred             cccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCC
Q 011021          159 YTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKAS  238 (495)
Q Consensus       159 ~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~  238 (495)
                      ..+|..+..+++|++|++++|.+...+....+++|++|++++|.++  .++..+..+|.|++|++++|...+-..+..++
T Consensus        38 ~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~  115 (198)
T 1ds9_A           38 EKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLSGIEKLV  115 (198)
T ss_dssp             CCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCCHHHHHHHH
T ss_pred             hhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCcCCccccCC
Confidence            4455566777888888888887765445667888888888888874  23344556678888888887532211122234


Q ss_pred             CccEEEeccccccceEEEEeCCcceEEEEeecCCCC-ceeEEeecCCCccEEEeeccccChHH---------HHHHhhcC
Q 011021          239 KLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDLVSVYFADNE---------FNHLISKF  308 (495)
Q Consensus       239 ~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~---------~~~l~~~~  308 (495)
                      +|+.|++.+|                      .... +....+..+++|+.|+++++.+++..         ....+..+
T Consensus       116 ~L~~L~l~~N----------------------~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l  173 (198)
T 1ds9_A          116 NLRVLYMSNN----------------------KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL  173 (198)
T ss_dssp             HSSEEEESEE----------------------ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred             CCCEEECCCC----------------------cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence            4444444433                      2211 01113456788888888887765431         22345678


Q ss_pred             CCCcEEE
Q 011021          309 PSLEDLF  315 (495)
Q Consensus       309 ~~L~~L~  315 (495)
                      ++|+.|+
T Consensus       174 ~~L~~Ld  180 (198)
T 1ds9_A          174 PNLKKLD  180 (198)
T ss_dssp             SSCSEEC
T ss_pred             CCcEEEC
Confidence            8888876

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.51  E-value=1.8e-07  Score=91.23  Aligned_cols=198  Identities=15%  Similarity=0.023  Sum_probs=124.3

Q ss_pred             cCceEeEEEeecCCCcccccCccc-ccCCcceEEEEeccccCC-CC--CccCCCCCcEEE-eeeEeeChHHHHHHHhcCC
Q 011021          142 NGVRELDFENITDENTVYTLPQAI-FSANSVTNLRLVWCRLEQ-PF--DSIMLCSLKKLT-LERVCLDEQMVQKLASECP  216 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l-~~~~~L~~L~L~~c~l~~-~~--~~~~l~~L~~L~-L~~~~~~~~~l~~l~~~~p  216 (495)
                      +++++|+  +..+  .-..+|... ..+++|++|+|++|.+.. .+  .+.++++|+.+. +..+.+.. .....+.+++
T Consensus        30 ~~l~~L~--Ls~N--~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l~~~~f~~l~  104 (350)
T 4ay9_X           30 RNAIELR--FVLT--KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLP  104 (350)
T ss_dssp             TTCSEEE--EESC--CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-ECTTSBCCCT
T ss_pred             CCCCEEE--ccCC--cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-cCchhhhhcc
Confidence            4788888  5433  334677654 558999999999998633 22  456788877654 44454421 1122367899


Q ss_pred             CccEEEEEecCCCcceee--cCCCCccEEEeccccccceEEEE-----eCCcceEEEEeecCCCCceeEEeecCCCccEE
Q 011021          217 LLEDLCFSNCWGLKHLCV--SKASKLKIMEIRSFSEEIEIVEI-----SVPSLQQLTLLFYGARRPRVVEVARSPHLKKL  289 (495)
Q Consensus       217 ~Le~L~L~~c~~l~~~~i--~~l~~L~~L~i~~c~~~l~~~~~-----~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  289 (495)
                      +|++|++.+|........  .+..++..|.+.++. .+..+..     ....++.|+++.+... ..+......++|+++
T Consensus       105 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~-~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l  182 (350)
T 4ay9_X          105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDEL  182 (350)
T ss_dssp             TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCT-TCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEE
T ss_pred             ccccccccccccccCCchhhcccchhhhhhhcccc-ccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHH
Confidence            999999999964322222  233567778887665 4444432     1246888888854442 222222345678889


Q ss_pred             EeeccccChHHHHHHhhcCCCCcEEEecCCCCCccccc-cccccceEEeccCCCccEEe
Q 011021          290 DLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI-SSNQLKNLLFRSCKYLKVID  347 (495)
Q Consensus       290 ~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~~-~~~~L~~L~l~~c~~l~~l~  347 (495)
                      .+.++..........+.++++|+.|++++| .++.++. .+.+|++|.+..+.+++.+.
T Consensus       183 ~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP  240 (350)
T 4ay9_X          183 NLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLP  240 (350)
T ss_dssp             ECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCC
T ss_pred             hhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCC
Confidence            887543222222334567899999999987 3555543 46788888888887776653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.49  E-value=2.1e-08  Score=91.10  Aligned_cols=136  Identities=13%  Similarity=0.025  Sum_probs=74.9

Q ss_pred             ccccCcccccCCcceEEEEeccccCCCC---CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcc--e
Q 011021          158 VYTLPQAIFSANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--L  232 (495)
Q Consensus       158 ~~~lp~~l~~~~~L~~L~L~~c~l~~~~---~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~--~  232 (495)
                      ...+|..+.  +.+++|+|++|.+....   .+..+++|++|+|+++.++.-. ...+.+++.|++|++++|.....  .
T Consensus        23 l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~   99 (220)
T 2v70_A           23 LNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLENVQHK   99 (220)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCGG
T ss_pred             cccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCccCccCHh
Confidence            345665443  45678888888765432   3567888888888887763211 12356777888888877754221  1


Q ss_pred             eecCCCCccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCc
Q 011021          233 CVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLE  312 (495)
Q Consensus       233 ~i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~  312 (495)
                      .+.++++|+.|+++++.                      .....+..+..+++|+.|+++++.++.... ..+..+++|+
T Consensus       100 ~~~~l~~L~~L~Ls~N~----------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~  156 (220)
T 2v70_A          100 MFKGLESLKTLMLRSNR----------------------ITCVGNDSFIGLSSVRLLSLYDNQITTVAP-GAFDTLHSLS  156 (220)
T ss_dssp             GGTTCSSCCEEECTTSC----------------------CCCBCTTSSTTCTTCSEEECTTSCCCCBCT-TTTTTCTTCC
T ss_pred             HhcCCcCCCEEECCCCc----------------------CCeECHhHcCCCccCCEEECCCCcCCEECH-HHhcCCCCCC
Confidence            23455666666666553                      111111223345566666666555543211 1233455666


Q ss_pred             EEEecCC
Q 011021          313 DLFVTRC  319 (495)
Q Consensus       313 ~L~L~~~  319 (495)
                      .|++.+|
T Consensus       157 ~L~L~~N  163 (220)
T 2v70_A          157 TLNLLAN  163 (220)
T ss_dssp             EEECCSC
T ss_pred             EEEecCc
Confidence            6666554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.48  E-value=3.9e-08  Score=89.26  Aligned_cols=132  Identities=11%  Similarity=0.010  Sum_probs=87.9

Q ss_pred             cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCcc
Q 011021          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  219 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  219 (495)
                      ..+++|+  +..+......-+..+..+++|++|+|++|.+...+  .+.++++|++|+|+++.++.- ....+.+++.|+
T Consensus        32 ~~~~~L~--L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~  108 (220)
T 2v70_A           32 QYTAELR--LNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV-QHKMFKGLESLK  108 (220)
T ss_dssp             TTCSEEE--CCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CGGGGTTCSSCC
T ss_pred             CCCCEEE--cCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc-CHhHhcCCcCCC
Confidence            4567777  54433222222233567899999999999876543  578899999999999988421 123367899999


Q ss_pred             EEEEEecCCCcc--eeecCCCCccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccC
Q 011021          220 DLCFSNCWGLKH--LCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA  297 (495)
Q Consensus       220 ~L~L~~c~~l~~--~~i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  297 (495)
                      +|++++|.....  ..+.++++|+.|+++++.                      .....+..+..+++|+.|++++|.+.
T Consensus       109 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~----------------------l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          109 TLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ----------------------ITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             EEECTTSCCCCBCTTSSTTCTTCSEEECTTSC----------------------CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             EEECCCCcCCeECHhHcCCCccCCEEECCCCc----------------------CCEECHHHhcCCCCCCEEEecCcCCc
Confidence            999999974322  223456777777777663                      11111223456888999999888765


Q ss_pred             h
Q 011021          298 D  298 (495)
Q Consensus       298 ~  298 (495)
                      .
T Consensus       167 c  167 (220)
T 2v70_A          167 C  167 (220)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.45  E-value=3.8e-07  Score=94.41  Aligned_cols=110  Identities=15%  Similarity=0.047  Sum_probs=51.5

Q ss_pred             CCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEecccc-ccceEEEEeCCcceEEEEeec
Q 011021          192 SLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFY  270 (495)
Q Consensus       192 ~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c~-~~l~~~~~~~p~L~~L~l~~~  270 (495)
                      +|+.|+|+++.++.  ++.  .-+++|++|++++|.. ..++ ..+++|+.|++++|. ..+..   -..+|+.|+++.+
T Consensus        60 ~L~~L~Ls~n~L~~--lp~--~l~~~L~~L~Ls~N~l-~~ip-~~l~~L~~L~Ls~N~l~~ip~---l~~~L~~L~Ls~N  130 (571)
T 3cvr_A           60 QFSELQLNRLNLSS--LPD--NLPPQITVLEITQNAL-ISLP-ELPASLEYLDACDNRLSTLPE---LPASLKHLDVDNN  130 (571)
T ss_dssp             TCSEEECCSSCCSC--CCS--CCCTTCSEEECCSSCC-SCCC-CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS
T ss_pred             CccEEEeCCCCCCc--cCH--hHcCCCCEEECcCCCC-cccc-cccCCCCEEEccCCCCCCcch---hhcCCCEEECCCC
Confidence            67777777766632  211  0135677777766643 2333 344566666666554 11111   1125555555533


Q ss_pred             CCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCC
Q 011021          271 GARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (495)
Q Consensus       271 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~  319 (495)
                      .... .+.   .+++|+.|++++|.++.  +   ...+++|+.|++++|
T Consensus       131 ~l~~-lp~---~l~~L~~L~Ls~N~l~~--l---p~~l~~L~~L~Ls~N  170 (571)
T 3cvr_A          131 QLTM-LPE---LPALLEYINADNNQLTM--L---PELPTSLEVLSVRNN  170 (571)
T ss_dssp             CCSC-CCC---CCTTCCEEECCSSCCSC--C---CCCCTTCCEEECCSS
T ss_pred             cCCC-CCC---cCccccEEeCCCCccCc--C---CCcCCCcCEEECCCC
Confidence            3221 111   34555555555555443  1   113445555555544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.43  E-value=1e-07  Score=83.18  Aligned_cols=128  Identities=12%  Similarity=-0.056  Sum_probs=73.1

Q ss_pred             ccCCcceEEEEeccccCCCCCccCC-CCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee---ecCCCCcc
Q 011021          166 FSANSVTNLRLVWCRLEQPFDSIML-CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASKLK  241 (495)
Q Consensus       166 ~~~~~L~~L~L~~c~l~~~~~~~~l-~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~---i~~l~~L~  241 (495)
                      ..+.+|++|++++|.+...+....+ ++|+.|++++|.+++-   ..+..++.|++|++++|.. ..+.   +.++++|+
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLT   91 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCC-CEECSCHHHHCTTCC
T ss_pred             CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcc-cccCcchhhcCCCCC
Confidence            4567888888888877654433333 3788888887776431   2245566666666666642 2221   12334444


Q ss_pred             EEEeccccccceEEEEeCCcceEEEEeecCCCCcee--EEeecCCCccEEEeeccccChH--HHHHHhhcCCCCcEEEec
Q 011021          242 IMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRV--VEVARSPHLKKLDLVSVYFADN--EFNHLISKFPSLEDLFVT  317 (495)
Q Consensus       242 ~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~~L~~L~L~  317 (495)
                      .|++++|.                      ... .+  ..++.+++|+.|+++++.++..  .....+..+|+|+.|+++
T Consensus        92 ~L~L~~N~----------------------i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~  148 (176)
T 1a9n_A           92 ELILTNNS----------------------LVE-LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  148 (176)
T ss_dssp             EEECCSCC----------------------CCC-GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             EEECCCCc----------------------CCc-chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCC
Confidence            44444432                      211 11  1345677888888887776541  111235677888888887


Q ss_pred             CCC
Q 011021          318 RCC  320 (495)
Q Consensus       318 ~~~  320 (495)
                      .+.
T Consensus       149 ~n~  151 (176)
T 1a9n_A          149 KVK  151 (176)
T ss_dssp             ECC
T ss_pred             cCC
Confidence            763

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.41  E-value=5.6e-08  Score=95.35  Aligned_cols=153  Identities=23%  Similarity=0.208  Sum_probs=88.0

Q ss_pred             cccCcccccCCcceEEEEeccccCCCC--Ccc-CCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce---
Q 011021          159 YTLPQAIFSANSVTNLRLVWCRLEQPF--DSI-MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---  232 (495)
Q Consensus       159 ~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~-~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~---  232 (495)
                      ..+|..+.  +.++.|+|++|.+...+  .+. ++++|++|+|+++.++.-. ...+.+++.|++|+|++|.. ..+   
T Consensus        31 ~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l-~~~~~~  106 (361)
T 2xot_A           31 PNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNHL-HTLDEF  106 (361)
T ss_dssp             SSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCC-CEECTT
T ss_pred             CccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCcC-CcCCHH
Confidence            34555443  45778888887765443  233 7788888888877763211 12255778888888887763 322   


Q ss_pred             eecCCCCccEEEeccccccceEEE----EeCCcceEEEEeecCCCCceeEE-e---ecCCCccEEEeeccccChHHHHHH
Q 011021          233 CVSKASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVE-V---ARSPHLKKLDLVSVYFADNEFNHL  304 (495)
Q Consensus       233 ~i~~l~~L~~L~i~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~-~---~~~~~L~~L~l~~~~~~~~~~~~l  304 (495)
                      .+.++++|+.|+++++.  +..+.    ...++|+.|+++.+.... .+.. +   ..+++|+.|++++|.++.-.. ..
T Consensus       107 ~~~~l~~L~~L~L~~N~--i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~  182 (361)
T 2xot_A          107 LFSDLQALEVLLLYNNH--IVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPL-TD  182 (361)
T ss_dssp             TTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCCCCCH-HH
T ss_pred             HhCCCcCCCEEECCCCc--ccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCCccCH-HH
Confidence            23456778888887774  32221    145677777777444322 1111 1   457778888888777664221 12


Q ss_pred             hhcCCC--CcEEEecCC
Q 011021          305 ISKFPS--LEDLFVTRC  319 (495)
Q Consensus       305 ~~~~~~--L~~L~L~~~  319 (495)
                      +..+++  ++.|++.+|
T Consensus       183 ~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          183 LQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             HHHSCHHHHTTEECCSS
T ss_pred             hhhccHhhcceEEecCC
Confidence            234454  366777765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.41  E-value=5.6e-08  Score=87.30  Aligned_cols=142  Identities=14%  Similarity=0.093  Sum_probs=74.9

Q ss_pred             eEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee---ecCCCCccEEEeccc
Q 011021          172 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASKLKIMEIRSF  248 (495)
Q Consensus       172 ~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~---i~~l~~L~~L~i~~c  248 (495)
                      +.++.+++.+...+ ....++|++|+++++.++. .....+.+++.|++|++.+|... .+.   +.++++|++|+++++
T Consensus        10 ~~v~c~~~~l~~~p-~~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTSVP-TGIPAQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSSCC-SCCCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccCCC-CCCCCCCcEEEcCCCccCc-CChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCC
Confidence            34555555554433 3346789999999998842 12233578999999999998542 222   345678888888777


Q ss_pred             cccceEEE----EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCC
Q 011021          249 SEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (495)
Q Consensus       249 ~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~  319 (495)
                      .  +..+.    ...++|+.|+++.+.........++.+++|+.|+++++.+++. ....+..+++|+.|++.+|
T Consensus        87 ~--l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A           87 Q--LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             C--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSC
T ss_pred             c--CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcccee-CHHHhccCCCccEEEecCC
Confidence            4  21111    1234555555553322211111123445555555555444321 1111233445555555444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.39  E-value=2.3e-07  Score=90.50  Aligned_cols=133  Identities=20%  Similarity=0.165  Sum_probs=83.8

Q ss_pred             HHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEecccc---ccceEEEE-eCCcceEEEEeecC----CCCce--
Q 011021          207 MVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS---EEIEIVEI-SVPSLQQLTLLFYG----ARRPR--  276 (495)
Q Consensus       207 ~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c~---~~l~~~~~-~~p~L~~L~l~~~~----~~~~~--  276 (495)
                      .+..++..+|.|++|.|.+|.++....+. +++|++|.+..|.   ..+..+.. .+|+|++|+++.+.    .....  
T Consensus       163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~  241 (362)
T 2ra8_A          163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV  241 (362)
T ss_dssp             BCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred             CHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence            35677889999999999988543322233 6899999998775   11122221 57999999986211    11000  


Q ss_pred             ---eEEeecCCCccEEEeeccccChHHHHHHh--hcCCCCcEEEecCCCCCcc-----cc---ccccccceEEeccCC
Q 011021          277 ---VVEVARSPHLKKLDLVSVYFADNEFNHLI--SKFPSLEDLFVTRCCLPGK-----IK---ISSNQLKNLLFRSCK  341 (495)
Q Consensus       277 ---~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~~L~~L~L~~~~~~~~-----i~---~~~~~L~~L~l~~c~  341 (495)
                         ....+.+|+|+.|++.++.+++.....+.  ..+|+|++|+|+.|. ++.     +.   ..+++|+.|+++.|.
T Consensus       242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCCc
Confidence               11113589999999998888765544443  357899999998663 332     21   134667777776553

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.35  E-value=1.3e-08  Score=100.11  Aligned_cols=133  Identities=17%  Similarity=0.143  Sum_probs=67.3

Q ss_pred             CcceEEEEeccccCCCC---CccCCCCCcEEEeeeEeeChHHHHHHH----hcCCCccEEEEEecCCCcce-------ee
Q 011021          169 NSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKLA----SECPLLEDLCFSNCWGLKHL-------CV  234 (495)
Q Consensus       169 ~~L~~L~L~~c~l~~~~---~~~~l~~L~~L~L~~~~~~~~~l~~l~----~~~p~Le~L~L~~c~~l~~~-------~i  234 (495)
                      ++|++|+|++|.+....   ....+++|++|+|++|.+++.....+.    ..++.|++|+|++|.. +..       .+
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~L  179 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPL-TAAGVAVLMEGL  179 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCC-HHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCC-ChHHHHHHHHHH
Confidence            56666666666654322   223455666666666666544443332    2356666666666642 110       01


Q ss_pred             cCCCCccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHH---hhcCCCC
Q 011021          235 SKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHL---ISKFPSL  311 (495)
Q Consensus       235 ~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~~L  311 (495)
                      ..+++|++|++++|.  +...               +. ......+...++|+.|++++|.+++.....+   +...++|
T Consensus       180 ~~~~~L~~L~Ls~N~--l~~~---------------g~-~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L  241 (372)
T 3un9_A          180 AGNTSVTHLSLLHTG--LGDE---------------GL-ELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSL  241 (372)
T ss_dssp             HTCSSCCEEECTTSS--CHHH---------------HH-HHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSC
T ss_pred             hcCCCcCEEeCCCCC--CCcH---------------HH-HHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCC
Confidence            123445555554442  0000               00 0011123345677777777777776443333   3456777


Q ss_pred             cEEEecCCC
Q 011021          312 EDLFVTRCC  320 (495)
Q Consensus       312 ~~L~L~~~~  320 (495)
                      ++|+|++|.
T Consensus       242 ~~L~Ls~N~  250 (372)
T 3un9_A          242 ELLHLYFNE  250 (372)
T ss_dssp             CEEECTTSS
T ss_pred             CEEeccCCC
Confidence            888777763

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.32  E-value=1.3e-07  Score=86.28  Aligned_cols=143  Identities=13%  Similarity=0.037  Sum_probs=91.6

Q ss_pred             ceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee---ecCCCCccEEEecc
Q 011021          171 VTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASKLKIMEIRS  247 (495)
Q Consensus       171 L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~---i~~l~~L~~L~i~~  247 (495)
                      -+.++.+++.+...+ ..-.++|++|+|+++.++.- ....+.++++|++|++++|.. ..+.   +.++++|+.|++++
T Consensus        21 ~~~v~c~~~~l~~ip-~~~~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASVP-AGIPTNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSCC-SCCCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCccC-CCCCCCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCC
Confidence            355777777665544 23348999999999988431 123356789999999998864 3322   23456666666665


Q ss_pred             ccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcccc-
Q 011021          248 FSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK-  326 (495)
Q Consensus       248 c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~-  326 (495)
                      +.                      ........++.+++|+.|+++++.++.  +...+..+++|+.|++++|. +..+. 
T Consensus        98 N~----------------------l~~l~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~-l~~~~~  152 (229)
T 3e6j_A           98 NQ----------------------LTVLPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQ-LKSIPH  152 (229)
T ss_dssp             SC----------------------CCCCCTTTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSC-CCCCCT
T ss_pred             Cc----------------------CCccChhHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCCc-CCccCH
Confidence            53                      111111224568999999999998874  22234688999999999873 33332 


Q ss_pred             ---ccccccceEEeccCC
Q 011021          327 ---ISSNQLKNLLFRSCK  341 (495)
Q Consensus       327 ---~~~~~L~~L~l~~c~  341 (495)
                         ...++|+.|.+.+.+
T Consensus       153 ~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          153 GAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             TTTTTCTTCCEEECTTSC
T ss_pred             HHHhCCCCCCEEEeeCCC
Confidence               234677777776554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.30  E-value=9.3e-08  Score=86.74  Aligned_cols=144  Identities=10%  Similarity=-0.061  Sum_probs=87.5

Q ss_pred             eEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcc--eeecCCCCccEEEecccc
Q 011021          172 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS  249 (495)
Q Consensus       172 ~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~--~~i~~l~~L~~L~i~~c~  249 (495)
                      +.++.+++.+...+. .-.++|+.|+|+++.++.-. ...+.++++|++|++++|.....  -.+.++++|+.|+++++.
T Consensus        14 ~~v~c~~~~l~~iP~-~l~~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPT-NLPETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCS-SCCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCC-ccCcCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            456777776655441 12368999999998873211 12356788888888888753211  123345566666665542


Q ss_pred             ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcccc---
Q 011021          250 EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK---  326 (495)
Q Consensus       250 ~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~---  326 (495)
                                            ...-....+.++++|+.|+++++.++.... ..+..+++|+.|++++|.. ..+.   
T Consensus        92 ----------------------l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l-~~~~~~~  147 (220)
T 2v9t_B           92 ----------------------ITELPKSLFEGLFSLQLLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKL-QTIAKGT  147 (220)
T ss_dssp             ----------------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCC-SCCCTTT
T ss_pred             ----------------------CCccCHhHccCCCCCCEEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcC-CEECHHH
Confidence                                  211111124578999999999998876322 2356789999999998843 2222   


Q ss_pred             -ccccccceEEeccCC
Q 011021          327 -ISSNQLKNLLFRSCK  341 (495)
Q Consensus       327 -~~~~~L~~L~l~~c~  341 (495)
                       ...++|+.|.+.+.+
T Consensus       148 ~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          148 FSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             TTTCTTCCEEECCSSC
T ss_pred             HhCCCCCCEEEeCCCC
Confidence             134567777766544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.30  E-value=1.5e-06  Score=84.77  Aligned_cols=181  Identities=15%  Similarity=0.100  Sum_probs=102.7

Q ss_pred             cccceEEEEEeccCCC--CChhHHHHHHHHHH-HcCceEeEEEeecCCCc--------ccccCcccccCCcceEEEEecc
Q 011021          111 FCIQKFRLFLTFLDVK--GSAPIVDRWIRLAV-ENGVRELDFENITDENT--------VYTLPQAIFSANSVTNLRLVWC  179 (495)
Q Consensus       111 ~~l~~l~l~~~~~~~~--~~~~~~~~wi~~a~-~~~l~~L~l~l~~~~~~--------~~~lp~~l~~~~~L~~L~L~~c  179 (495)
                      ..++.+.+..-.  +.  .....+..++..+. ..+++.|.  +......        ...++..+..+++|+.|.|++|
T Consensus       107 ~~v~~L~lg~~~--~~~~~~~~~~~~L~~s~~~l~~L~~L~--l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~  182 (362)
T 2ra8_A          107 PSLKQITIGXWG--YEGEDCSDIADGIVENKEKFAHFEGLF--WGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT  182 (362)
T ss_dssp             GGCSEEEECCCC--SSSCCSHHHHHHHHTTHHHHTTCSEEE--ECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECC
T ss_pred             hhcceEEEcccc--cCCCcHHHHHHHHHHhhhhcchhhhee--ecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCC
Confidence            346666655321  22  11124445544332 37999998  4221110        1134455556799999999987


Q ss_pred             c-cCCCCCccCCCCCcEEEeeeEeeChHHHHHHH-hcCCCccEEEEEecCC-------Ccce----eecCCCCccEEEec
Q 011021          180 R-LEQPFDSIMLCSLKKLTLERVCLDEQMVQKLA-SECPLLEDLCFSNCWG-------LKHL----CVSKASKLKIMEIR  246 (495)
Q Consensus       180 ~-l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~-~~~p~Le~L~L~~c~~-------l~~~----~i~~l~~L~~L~i~  246 (495)
                      . +..+ . ...++|++|+|..+.++...+..+. ..+|+|+.|+|..+..       +..+    ....+|+|+.|.+.
T Consensus       183 ~~l~l~-~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~  260 (362)
T 2ra8_A          183 NNLSIG-K-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIV  260 (362)
T ss_dssp             BTCBCC-S-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEE
T ss_pred             CCceec-c-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCC
Confidence            3 3222 2 3489999999999888877777765 3799999999974311       1000    11134555555555


Q ss_pred             cccccceEEEEeCCcceEEEEeecCCCCc---eeEEeecCCCccEEEeeccccChHHHHHHh---hcCCCCcEEEecCC
Q 011021          247 SFSEEIEIVEISVPSLQQLTLLFYGARRP---RVVEVARSPHLKKLDLVSVYFADNEFNHLI---SKFPSLEDLFVTRC  319 (495)
Q Consensus       247 ~c~~~l~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~~L~~L~L~~~  319 (495)
                      +|.                      ....   .....+.+|+|++|+|+++.+++.....+.   ..+++|+.|+++.|
T Consensus       261 ~~~----------------------i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          261 DAE----------------------EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             SCT----------------------THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             CCC----------------------CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence            543                      1100   000112366777777777777765444433   34677777777766

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.22  E-value=5e-07  Score=93.83  Aligned_cols=119  Identities=18%  Similarity=0.232  Sum_probs=52.1

Q ss_pred             CCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce--eecCCCCccEEEecccc-ccceEEEEeCCcceEEEEe
Q 011021          192 SLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLL  268 (495)
Q Consensus       192 ~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~--~i~~l~~L~~L~i~~c~-~~l~~~~~~~p~L~~L~l~  268 (495)
                      .|+.|+|++|.++.  ++. +.++++|+.|++++|... .+  .+.++++|+.|+++++. .++. ....+++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECC
Confidence            46666666665532  223 455666666666666432 21  22344555555555443 1111 00023344444444


Q ss_pred             ecCCCCce-eEEeecCCCccEEEeeccccChH--HHHHHhhcCCCCcEEE
Q 011021          269 FYGARRPR-VVEVARSPHLKKLDLVSVYFADN--EFNHLISKFPSLEDLF  315 (495)
Q Consensus       269 ~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~~L~~L~  315 (495)
                      .+...... +..++.+++|+.|++++|.+++.  ....+...+|+|+.|+
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            22222211 33344555566666655554431  1112233355555553

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.12  E-value=3.8e-07  Score=89.33  Aligned_cols=151  Identities=16%  Similarity=0.072  Sum_probs=102.4

Q ss_pred             CceEeEEEeecCCCcccccCcccc--cCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCc
Q 011021          143 GVRELDFENITDENTVYTLPQAIF--SANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  218 (495)
Q Consensus       143 ~l~~L~l~l~~~~~~~~~lp~~l~--~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L  218 (495)
                      .++.|+  +..+  ....++...+  .+++|++|+|++|.+...+  .+.++++|++|+|++|.++.- ....+.++++|
T Consensus        40 ~l~~L~--Ls~N--~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L  114 (361)
T 2xot_A           40 YTALLD--LSHN--NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQAL  114 (361)
T ss_dssp             TCSEEE--CCSS--CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTC
T ss_pred             CCCEEE--CCCC--CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcCC
Confidence            466777  5432  2334554444  6899999999999886544  577899999999999988321 12236789999


Q ss_pred             cEEEEEecCCCcc--eeecCCCCccEEEecccc-ccceEEE----EeCCcceEEEEeecCCCCceeEEeecCCC--ccEE
Q 011021          219 EDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS-EEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPH--LKKL  289 (495)
Q Consensus       219 e~L~L~~c~~l~~--~~i~~l~~L~~L~i~~c~-~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~--L~~L  289 (495)
                      ++|+|++|.....  ..+.++++|+.|+++++. ..+..-.    ...++|+.|+++++....-....+..++.  ++.|
T Consensus       115 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l  194 (361)
T 2xot_A          115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL  194 (361)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTE
T ss_pred             CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceE
Confidence            9999999974321  234578999999999886 2211111    24789999999965543222223455665  4889


Q ss_pred             EeeccccCh
Q 011021          290 DLVSVYFAD  298 (495)
Q Consensus       290 ~l~~~~~~~  298 (495)
                      ++.+|.+..
T Consensus       195 ~l~~N~~~C  203 (361)
T 2xot_A          195 YLHNNPLEC  203 (361)
T ss_dssp             ECCSSCEEC
T ss_pred             EecCCCccC
Confidence            999988764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.08  E-value=3e-07  Score=90.35  Aligned_cols=139  Identities=14%  Similarity=0.043  Sum_probs=89.1

Q ss_pred             cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCC--Cc-----cCCCCCcEEEeeeEeeChHHHH---HH
Q 011021          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DS-----IMLCSLKKLTLERVCLDEQMVQ---KL  211 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~-----~~l~~L~~L~L~~~~~~~~~l~---~l  211 (495)
                      .++++|+  +..+......+......+++|++|+|++|.+....  ..     ...++|++|+|++|.+++....   ..
T Consensus       101 ~~L~~L~--Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~  178 (372)
T 3un9_A          101 HALDEVN--LASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG  178 (372)
T ss_dssp             SCEEEEE--CTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH
T ss_pred             CCceEEE--ecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH
Confidence            5788888  65443333222222223578999999999886543  11     2468999999999999654444   44


Q ss_pred             HhcCCCccEEEEEecCCCcce-------eecCCCCccEEEeccccccceEEEEeCCcceEEEEeecCCCC----ceeEEe
Q 011021          212 ASECPLLEDLCFSNCWGLKHL-------CVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARR----PRVVEV  280 (495)
Q Consensus       212 ~~~~p~Le~L~L~~c~~l~~~-------~i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~----~~~~~~  280 (495)
                      +..++.|++|+|++|.. +..       .+...++|+.|++++|.                      ...    .....+
T Consensus       179 L~~~~~L~~L~Ls~N~l-~~~g~~~L~~~L~~~~~L~~L~Ls~N~----------------------i~~~g~~~l~~~L  235 (372)
T 3un9_A          179 LAGNTSVTHLSLLHTGL-GDEGLELLAAQLDRNRQLQELNVAYNG----------------------AGDTAALALARAA  235 (372)
T ss_dssp             HHTCSSCCEEECTTSSC-HHHHHHHHHHHGGGCSCCCEEECCSSC----------------------CCHHHHHHHHHHH
T ss_pred             HhcCCCcCEEeCCCCCC-CcHHHHHHHHHHhcCCCcCeEECCCCC----------------------CCHHHHHHHHHHH
Confidence            57899999999999973 321       12234566666666553                      211    011123


Q ss_pred             ecCCCccEEEeeccccChHHHHHHh
Q 011021          281 ARSPHLKKLDLVSVYFADNEFNHLI  305 (495)
Q Consensus       281 ~~~~~L~~L~l~~~~~~~~~~~~l~  305 (495)
                      ...++|++|++++|.+++.....+.
T Consensus       236 ~~~~~L~~L~Ls~N~i~~~g~~~L~  260 (372)
T 3un9_A          236 REHPSLELLHLYFNELSSEGRQVLR  260 (372)
T ss_dssp             HHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred             HhCCCCCEEeccCCCCCHHHHHHHH
Confidence            3568899999999998886665543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.04  E-value=9.3e-07  Score=78.21  Aligned_cols=66  Identities=21%  Similarity=0.058  Sum_probs=37.9

Q ss_pred             cccCcccccCCcceEEEEeccccCCCC---CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecC
Q 011021          159 YTLPQAIFSANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCW  227 (495)
Q Consensus       159 ~~lp~~l~~~~~L~~L~L~~c~l~~~~---~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~  227 (495)
                      ..+|..+..  +|++|+++++.+...+   .+..+++|++|+|+++.++.- ....+.+++.|++|++++|.
T Consensus        21 ~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           21 KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCC
T ss_pred             CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCc
Confidence            455554432  6777777777665433   145677777777777766321 11224456666666666654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.03  E-value=1.6e-06  Score=75.38  Aligned_cols=110  Identities=15%  Similarity=0.029  Sum_probs=63.2

Q ss_pred             CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEeccccccceEEEEeCCcceEE
Q 011021          186 DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQL  265 (495)
Q Consensus       186 ~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L  265 (495)
                      ....+++|+.|+++++.++.  ++.+...+|.|++|++++|..-+...+.+++                      +|++|
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~----------------------~L~~L   69 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKLDGFPLLR----------------------RLKTL   69 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEECCCCCCS----------------------SCCEE
T ss_pred             hcCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcccccccCC----------------------CCCEE
Confidence            34556777888887777642  2233333447777777776432211222334                      44444


Q ss_pred             EEeecCCCCceeEE-eecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCC
Q 011021          266 TLLFYGARRPRVVE-VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC  320 (495)
Q Consensus       266 ~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  320 (495)
                      +++++.... .+.. ++.+++|+.|++++|.+++-.....+..+++|+.|++.+|+
T Consensus        70 ~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~  124 (176)
T 1a9n_A           70 LVNNNRICR-IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP  124 (176)
T ss_dssp             ECCSSCCCE-ECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             ECCCCcccc-cCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC
Confidence            444322211 1111 35788999999999888652111235678999999999874

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.02  E-value=3.2e-07  Score=81.62  Aligned_cols=109  Identities=14%  Similarity=0.110  Sum_probs=69.5

Q ss_pred             CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEeccccccceEEEEeCCcceEE
Q 011021          186 DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQL  265 (495)
Q Consensus       186 ~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L  265 (495)
                      .+..+++|++|+++++.++.  ++ .+.++++|++|++++|... .+     +               .....+++|+.|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~-~l-----~---------------~~~~~~~~L~~L   98 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK-KI-----E---------------NLDAVADTLEEL   98 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEEC-SC-----S---------------SHHHHHHHCSEE
T ss_pred             HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcc-cc-----c---------------chhhcCCcCCEE
Confidence            34567788888888887743  22 3556777777777776321 11     1               000123566666


Q ss_pred             EEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCC
Q 011021          266 TLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC  320 (495)
Q Consensus       266 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  320 (495)
                      +++++.... .+ .++.+++|+.|+++++.+++-.....+..+++|+.|++.+|.
T Consensus        99 ~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A           99 WISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             EEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             ECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence            666544432 22 456788999999999998863332446789999999999874

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.99  E-value=5.2e-06  Score=71.39  Aligned_cols=65  Identities=15%  Similarity=0.136  Sum_probs=39.9

Q ss_pred             eecCCCccEEEeeccc-cChHHHHHHhhc---CCCCcEEEecCCCCCcccc----ccccccceEEeccCCCcc
Q 011021          280 VARSPHLKKLDLVSVY-FADNEFNHLISK---FPSLEDLFVTRCCLPGKIK----ISSNQLKNLLFRSCKYLK  344 (495)
Q Consensus       280 ~~~~~~L~~L~l~~~~-~~~~~~~~l~~~---~~~L~~L~L~~~~~~~~i~----~~~~~L~~L~l~~c~~l~  344 (495)
                      +.+|++|++|+|++|. +++..+..+...   +++|+.|+|++|..++.-.    ..+++|+.|++++|+.++
T Consensus        81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A           81 MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred             hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence            3467777777777664 666666665442   4567777777776555321    135666666666666554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.99  E-value=1.5e-05  Score=76.84  Aligned_cols=34  Identities=15%  Similarity=0.338  Sum_probs=18.6

Q ss_pred             CccEEEeeccccChHHHHHHhhcCCCCcEEEecCC
Q 011021          285 HLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (495)
Q Consensus       285 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~  319 (495)
                      +++.+.+.+. +....+..+...+++|+.+++.++
T Consensus       203 ~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n  236 (329)
T 3sb4_A          203 DINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKT  236 (329)
T ss_dssp             GCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTB
T ss_pred             ccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCC
Confidence            4445555443 223334444445788888888764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.95  E-value=6.3e-06  Score=71.64  Aligned_cols=66  Identities=21%  Similarity=0.130  Sum_probs=38.3

Q ss_pred             cccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecC
Q 011021          159 YTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCW  227 (495)
Q Consensus       159 ~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~  227 (495)
                      ..+|..+.  ++|++|+++++.+...+  .+..+++|++|+++++.++.- ....+.+++.|++|++++|.
T Consensus        20 ~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A           20 TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             SSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             ccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCC
Confidence            34454332  57777777777765433  345677777777777766311 11223456666666666664

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.89  E-value=2.3e-06  Score=78.75  Aligned_cols=35  Identities=20%  Similarity=0.469  Sum_probs=32.5

Q ss_pred             cCCCCChHHHHHHhcCCChhHHHhhhcccccchhh
Q 011021           19 RISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL   53 (495)
Q Consensus        19 ~is~LPd~vL~~Ils~L~~~d~~rts~lSkrWr~l   53 (495)
                      -|+.||+||+.+|||||+.+|+++++.|||+||.+
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l   38 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET   38 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999963

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.86  E-value=6.4e-06  Score=76.72  Aligned_cols=37  Identities=22%  Similarity=0.551  Sum_probs=34.5

Q ss_pred             CCcCCCCChHHHHHHhcCCChhHHH-hhhcccccchhh
Q 011021           17 MDRISELPTFIIHHLMSYLSAKEVA-RTSVLSKKWNQL   53 (495)
Q Consensus        17 ~d~is~LPd~vL~~Ils~L~~~d~~-rts~lSkrWr~l   53 (495)
                      ...+..||||++.+||++||.++++ |++.|||+||.+
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l   85 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL   85 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence            3578899999999999999999999 999999999986

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.85  E-value=4.3e-06  Score=73.94  Aligned_cols=58  Identities=17%  Similarity=0.016  Sum_probs=27.7

Q ss_pred             CcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecC
Q 011021          169 NSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCW  227 (495)
Q Consensus       169 ~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~  227 (495)
                      ++|++|+++++.+...+ .+..+++|++|+|+++.++.- ....+.+++.|++|++++|.
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCc
Confidence            45666666665554332 344555555555555555210 01123344555555555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.84  E-value=1e-05  Score=83.91  Aligned_cols=99  Identities=21%  Similarity=0.180  Sum_probs=55.0

Q ss_pred             CceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEE
Q 011021          143 GVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (495)
Q Consensus       143 ~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L  221 (495)
                      .++.|+  +..+  .-..+|. +..+++|+.|+|++|.+...+ .++++++|+.|+|++|.++.  ++ -+.+++.|+.|
T Consensus       442 ~L~~L~--Ls~n--~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L  513 (567)
T 1dce_A          442 DVRVLH--LAHK--DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQEL  513 (567)
T ss_dssp             TCSEEE--CTTS--CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEE
T ss_pred             CceEEE--ecCC--CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEE
Confidence            455555  4322  2223554 556667777777776665433 45566777777777666632  22 35566667777


Q ss_pred             EEEecCCCcc---eeecCCCCccEEEecccc
Q 011021          222 CFSNCWGLKH---LCVSKASKLKIMEIRSFS  249 (495)
Q Consensus       222 ~L~~c~~l~~---~~i~~l~~L~~L~i~~c~  249 (495)
                      ++++|...+.   ..+.++++|+.|+++++.
T Consensus       514 ~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             ECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             ECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence            7766643221   123345666666666554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.84  E-value=6.6e-06  Score=72.65  Aligned_cols=124  Identities=16%  Similarity=0.043  Sum_probs=86.5

Q ss_pred             eEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcc--eeecCCCCccEEEecccc
Q 011021          172 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS  249 (495)
Q Consensus       172 ~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~--~~i~~l~~L~~L~i~~c~  249 (495)
                      ++++++++.+...+. .-.++|++|+++++.++.-.....+.+++.|++|++++|...+.  ..+.++++|+.|+++++.
T Consensus        11 ~~l~~s~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TEEECTTSCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CEEEcCCCCcCcCcc-CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            678888887765441 22348999999999884322122367889999999999864332  234567899999999885


Q ss_pred             ccceEEE---E-eCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccCh
Q 011021          250 EEIEIVE---I-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFAD  298 (495)
Q Consensus       250 ~~l~~~~---~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  298 (495)
                        +..+.   + ..++|++|+++++......+..++.+++|+.|++++|.+..
T Consensus        90 --l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           90 --IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             --CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             --CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence              33332   2 46889999998655543334456778999999999988764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.81  E-value=6.4e-06  Score=71.58  Aligned_cols=76  Identities=21%  Similarity=0.133  Sum_probs=49.8

Q ss_pred             ceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee---ecCCCCccEEEecc
Q 011021          171 VTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASKLKIMEIRS  247 (495)
Q Consensus       171 L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~---i~~l~~L~~L~i~~  247 (495)
                      .+.++++++.+...+ ....++|++|+++++.++. .....+.+++.|++|++++|.. ..+.   +.++++|+.|++++
T Consensus         9 ~~~l~~~~~~l~~~p-~~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVP-TGIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSCC-TTCCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccCC-CCCCCCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcc-eEeChhHccCCCccCEEECCC
Confidence            467777777766544 3345799999999988742 1122356788999999988853 2222   23556777777766


Q ss_pred             cc
Q 011021          248 FS  249 (495)
Q Consensus       248 c~  249 (495)
                      +.
T Consensus        86 N~   87 (177)
T 2o6r_A           86 NK   87 (177)
T ss_dssp             SC
T ss_pred             CC
Confidence            53

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.80  E-value=2e-05  Score=69.51  Aligned_cols=101  Identities=16%  Similarity=0.008  Sum_probs=72.0

Q ss_pred             cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCcc
Q 011021          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  219 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  219 (495)
                      .++++|+  +..+  ....+|..+..+++|++|+|++|.+....  .+.++++|++|+|++|.++.-. ...+.+++.|+
T Consensus        31 ~~l~~L~--L~~n--~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~  105 (193)
T 2wfh_A           31 RDVTELY--LDGN--QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLR  105 (193)
T ss_dssp             TTCCEEE--CCSS--CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCC
T ss_pred             CCCCEEE--CCCC--cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCCC
Confidence            3678887  5433  23467777888999999999999987654  4778999999999999884211 12356889999


Q ss_pred             EEEEEecCCCccee---ecCCCCccEEEeccc
Q 011021          220 DLCFSNCWGLKHLC---VSKASKLKIMEIRSF  248 (495)
Q Consensus       220 ~L~L~~c~~l~~~~---i~~l~~L~~L~i~~c  248 (495)
                      +|++++|... .+.   +..+++|+.|++.++
T Consensus       106 ~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A          106 LLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             EEECCSSCCC-BCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCCCC-eeChhhhhcCccccEEEeCCC
Confidence            9999998642 222   234566666666654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.78  E-value=1.8e-06  Score=92.53  Aligned_cols=111  Identities=13%  Similarity=-0.019  Sum_probs=60.9

Q ss_pred             CcccccCCcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee--ecCCC
Q 011021          162 PQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKAS  238 (495)
Q Consensus       162 p~~l~~~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~--i~~l~  238 (495)
                      |..+..+++|+.|+|++|.+...+ ....+++|++|+|++|.++  .++.-+.++++|+.|+|++|... .++  +.+  
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~--  291 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS--  291 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG--
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC--
Confidence            334444566666666666654333 3446666666666666653  12223455666666666666422 211  122  


Q ss_pred             CccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccCh
Q 011021          239 KLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFAD  298 (495)
Q Consensus       239 ~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  298 (495)
                                          +++|++|+++.+... ..+..++.+++|+.|+|++|.++.
T Consensus       292 --------------------l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          292 --------------------CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             --------------------GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             --------------------CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCC
Confidence                                345555555533332 334446788899999999988875

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.73  E-value=2.9e-06  Score=81.82  Aligned_cols=42  Identities=14%  Similarity=0.074  Sum_probs=29.4

Q ss_pred             cCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcccc
Q 011021          282 RSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK  326 (495)
Q Consensus       282 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~  326 (495)
                      .|++|+.+++.++.++. .....+.+|++|+.+++..+  +..|+
T Consensus       224 ~~~~L~~l~L~~n~i~~-I~~~aF~~~~~L~~l~l~~n--i~~I~  265 (329)
T 3sb4_A          224 YMPNLVSLDISKTNATT-IPDFTFAQKKYLLKIKLPHN--LKTIG  265 (329)
T ss_dssp             HCTTCCEEECTTBCCCE-ECTTTTTTCTTCCEEECCTT--CCEEC
T ss_pred             hcCCCeEEECCCCCcce-ecHhhhhCCCCCCEEECCcc--cceeh
Confidence            38999999999876553 11233567899999999874  44443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.64  E-value=3.6e-05  Score=66.35  Aligned_cols=89  Identities=13%  Similarity=0.050  Sum_probs=57.1

Q ss_pred             ccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce--e
Q 011021          158 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--C  233 (495)
Q Consensus       158 ~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~--~  233 (495)
                      -..+|..+.  ++|++|+|++|.+....  .+.++++|++|+|++|.++. .....+.++++|++|+|++|......  .
T Consensus        21 l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~N~l~~~~~~~   97 (170)
T 3g39_A           21 LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQLKSIPRGA   97 (170)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCCEEECCCCccCEeCHHH
Confidence            345665553  77888888888876543  46778888888888888732 11223467888888888887532211  1


Q ss_pred             ecCCCCccEEEecccc
Q 011021          234 VSKASKLKIMEIRSFS  249 (495)
Q Consensus       234 i~~l~~L~~L~i~~c~  249 (495)
                      +.++++|+.|++.++.
T Consensus        98 ~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           98 FDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             TTTCTTCCEEECCSSC
T ss_pred             hcCCCCCCEEEeCCCC
Confidence            3345666666666553

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.61  E-value=7.7e-06  Score=87.59  Aligned_cols=63  Identities=16%  Similarity=0.077  Sum_probs=44.5

Q ss_pred             eCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCc
Q 011021          258 SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG  323 (495)
Q Consensus       258 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~  323 (495)
                      .+++|+.|+++++... ..+..++.+++|+.|+|++|.++.  +...+.++++|+.|+|++|...+
T Consensus       268 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          268 NLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTT--LPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             GGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCC--CCSSTTSCTTCCCEECTTSCCCS
T ss_pred             CCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCc--cChhhhcCCCccEEeCCCCccCC
Confidence            3456666666644433 345567789999999999998763  22225678999999999986544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.59  E-value=4.5e-05  Score=66.04  Aligned_cols=88  Identities=13%  Similarity=0.055  Sum_probs=55.4

Q ss_pred             ccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee--
Q 011021          158 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC--  233 (495)
Q Consensus       158 ~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~--  233 (495)
                      -..+|..+.  ++|++|+|++|.+...+  .+.++++|++|+|++|.++. .....+.++++|++|+|++|..- .+.  
T Consensus        24 l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~l~-~l~~~   99 (174)
T 2r9u_A           24 LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLK-SIPRG   99 (174)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCC-CCCTT
T ss_pred             CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCCCccc-eeCHH
Confidence            345666553  77888888888776543  46678888888888887732 11123456788888888877532 221  


Q ss_pred             -ecCCCCccEEEecccc
Q 011021          234 -VSKASKLKIMEIRSFS  249 (495)
Q Consensus       234 -i~~l~~L~~L~i~~c~  249 (495)
                       +.++++|+.|++.++.
T Consensus       100 ~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A          100 AFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             TTTTCTTCSEEECCSSC
T ss_pred             HhccccCCCEEEeCCCC
Confidence             3345666666665543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.55  E-value=4.1e-05  Score=75.76  Aligned_cols=146  Identities=10%  Similarity=0.080  Sum_probs=67.8

Q ss_pred             cCcccccCCcceEEEEeccccCCCC-CccCCCCCcEEEeeeE--eeChHHHHHHHhcCCCccEEEEEecCCCcceeec--
Q 011021          161 LPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERV--CLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVS--  235 (495)
Q Consensus       161 lp~~l~~~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~--~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~--  235 (495)
                      ++...|...+|+.+.+...--.... .+.+ .+|+.+.+...  .+...    .+.+|++|+.+.+.++. +..+.-.  
T Consensus       127 I~~~aF~~~~L~~i~l~~~i~~I~~~aF~~-~~L~~i~lp~~l~~I~~~----aF~~c~~L~~l~l~~n~-l~~I~~~aF  200 (401)
T 4fdw_A          127 IPKDAFRNSQIAKVVLNEGLKSIGDMAFFN-STVQEIVFPSTLEQLKED----IFYYCYNLKKADLSKTK-ITKLPASTF  200 (401)
T ss_dssp             ECTTTTTTCCCSEEECCTTCCEECTTTTTT-CCCCEEECCTTCCEECSS----TTTTCTTCCEEECTTSC-CSEECTTTT
T ss_pred             ehHhhcccCCccEEEeCCCccEECHHhcCC-CCceEEEeCCCccEehHH----HhhCcccCCeeecCCCc-ceEechhhE
Confidence            3333343336777777654111111 2233 35777776541  11222    24577777777776543 2221111  


Q ss_pred             CCCCccEEEeccccccceEEEE----eCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCC
Q 011021          236 KASKLKIMEIRSFSEEIEIVEI----SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSL  311 (495)
Q Consensus       236 ~l~~L~~L~i~~c~~~l~~~~~----~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L  311 (495)
                      .+.+|+.+.+...   +..+.-    .+++|+.+.+.. +...-....+.+ .+|+.+.+... ++. .-...+.+|++|
T Consensus       201 ~~~~L~~l~lp~~---l~~I~~~aF~~~~~L~~l~l~~-~l~~I~~~aF~~-~~L~~i~lp~~-i~~-I~~~aF~~c~~L  273 (401)
T 4fdw_A          201 VYAGIEEVLLPVT---LKEIGSQAFLKTSQLKTIEIPE-NVSTIGQEAFRE-SGITTVKLPNG-VTN-IASRAFYYCPEL  273 (401)
T ss_dssp             TTCCCSEEECCTT---CCEECTTTTTTCTTCCCEECCT-TCCEECTTTTTT-CCCSEEEEETT-CCE-ECTTTTTTCTTC
T ss_pred             eecccCEEEeCCc---hheehhhHhhCCCCCCEEecCC-CccCcccccccc-CCccEEEeCCC-ccE-EChhHhhCCCCC
Confidence            1356666666432   222221    456677766651 110000001222 46777777422 211 001224567888


Q ss_pred             cEEEecCC
Q 011021          312 EDLFVTRC  319 (495)
Q Consensus       312 ~~L~L~~~  319 (495)
                      +.+.+.++
T Consensus       274 ~~l~l~~~  281 (401)
T 4fdw_A          274 AEVTTYGS  281 (401)
T ss_dssp             CEEEEESS
T ss_pred             CEEEeCCc
Confidence            88888764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.50  E-value=2.1e-05  Score=79.18  Aligned_cols=39  Identities=26%  Similarity=0.518  Sum_probs=36.5

Q ss_pred             cCCCcCCCCChHHHHHHhcCCChhHHHhhhcccccchhh
Q 011021           15 VAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL   53 (495)
Q Consensus        15 ~~~d~is~LPd~vL~~Ils~L~~~d~~rts~lSkrWr~l   53 (495)
                      -..|.|+.||+|++.+||+||+.+|+++++.|||+|+++
T Consensus        10 ~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~   48 (464)
T 3v7d_B           10 LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKI   48 (464)
T ss_dssp             CCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHH
T ss_pred             cccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            357999999999999999999999999999999999875

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.39  E-value=7.1e-05  Score=74.96  Aligned_cols=40  Identities=25%  Similarity=0.400  Sum_probs=37.0

Q ss_pred             ccCCCcCCCCChHHHHHHhcCCChhHHHhhhcccccchhh
Q 011021           14 VVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL   53 (495)
Q Consensus        14 ~~~~d~is~LPd~vL~~Ils~L~~~d~~rts~lSkrWr~l   53 (495)
                      ....|.++.||+|++.+||+||+.+|+++++.|||+|+.+
T Consensus        13 ~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~   52 (445)
T 2ovr_B           13 QFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (445)
T ss_dssp             CCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             cccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence            4467999999999999999999999999999999999863

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.23  E-value=0.00011  Score=64.25  Aligned_cols=110  Identities=11%  Similarity=0.073  Sum_probs=62.6

Q ss_pred             cCCCCCcEEEeeeE-eeChHHHHH---HHhcCCCccEEEEEecCCCcc--e----eecCCCCccEEEeccccccceEEEE
Q 011021          188 IMLCSLKKLTLERV-CLDEQMVQK---LASECPLLEDLCFSNCWGLKH--L----CVSKASKLKIMEIRSFSEEIEIVEI  257 (495)
Q Consensus       188 ~~l~~L~~L~L~~~-~~~~~~l~~---l~~~~p~Le~L~L~~c~~l~~--~----~i~~l~~L~~L~i~~c~~~l~~~~~  257 (495)
                      ...+.|++|+|+++ .+++.+...   .+..++.|++|+|++|..-..  .    .+...++|++|++++|.        
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~--------  104 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF--------  104 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC--------
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc--------
Confidence            45677888888877 775554443   345567777777777653211  0    01112344444444432        


Q ss_pred             eCCcceEEEEeecCCCCc----eeEEeecCCCccEEEe--eccccChHHH---HHHhhcCCCCcEEEecCC
Q 011021          258 SVPSLQQLTLLFYGARRP----RVVEVARSPHLKKLDL--VSVYFADNEF---NHLISKFPSLEDLFVTRC  319 (495)
Q Consensus       258 ~~p~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l--~~~~~~~~~~---~~l~~~~~~L~~L~L~~~  319 (495)
                                    ....    ....+...++|++|++  .++.+++...   ...+...++|+.|++++|
T Consensus       105 --------------i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          105 --------------ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             --------------CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             --------------CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence                          2111    1112345677888888  7788877543   334456678888888876

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.17  E-value=7.1e-05  Score=74.83  Aligned_cols=39  Identities=31%  Similarity=0.627  Sum_probs=36.0

Q ss_pred             cCCCcCCCCChH----HHHHHhcCCChhHHHhhhcccccchhh
Q 011021           15 VAMDRISELPTF----IIHHLMSYLSAKEVARTSVLSKKWNQL   53 (495)
Q Consensus        15 ~~~d~is~LPd~----vL~~Ils~L~~~d~~rts~lSkrWr~l   53 (495)
                      -..|.|+.||+|    ++.+||+||+.+++++++.|||+|+++
T Consensus         6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~   48 (435)
T 1p22_A            6 LQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (435)
T ss_dssp             SCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             hhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            357999999999    999999999999999999999999953

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.01  E-value=0.0012  Score=64.94  Aligned_cols=33  Identities=21%  Similarity=0.175  Sum_probs=15.9

Q ss_pred             cCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecC
Q 011021          282 RSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTR  318 (495)
Q Consensus       282 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~  318 (495)
                      .++.++.+......+.+.    ....+.+|+.+.+..
T Consensus       274 ~~~~l~~~~~~~~~i~~~----~F~~~~~L~~i~l~~  306 (394)
T 4fs7_A          274 NCSGLKKVIYGSVIVPEK----TFYGCSSLTEVKLLD  306 (394)
T ss_dssp             TCTTCCEEEECSSEECTT----TTTTCTTCCEEEECT
T ss_pred             cccccceeccCceeeccc----ccccccccccccccc
Confidence            445555555443333221    234566666666643

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.98  E-value=0.00011  Score=64.15  Aligned_cols=60  Identities=10%  Similarity=0.092  Sum_probs=33.3

Q ss_pred             CCcceEEEEecc-ccCCCC------CccCCCCCcEEEeeeEeeChHHHH---HHHhcCCCccEEEEEecC
Q 011021          168 ANSVTNLRLVWC-RLEQPF------DSIMLCSLKKLTLERVCLDEQMVQ---KLASECPLLEDLCFSNCW  227 (495)
Q Consensus       168 ~~~L~~L~L~~c-~l~~~~------~~~~l~~L~~L~L~~~~~~~~~l~---~l~~~~p~Le~L~L~~c~  227 (495)
                      +++|++|+|++| .+....      .....++|++|+|++|.+++.+..   ..+...+.|++|+|++|.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~  104 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF  104 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence            455666666665 543321      223456666677766666544332   334456667777777665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.86  E-value=0.00053  Score=66.25  Aligned_cols=89  Identities=19%  Similarity=0.109  Sum_probs=62.3

Q ss_pred             ccccCcccccCCcceEEEEec-cccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceee
Q 011021          158 VYTLPQAIFSANSVTNLRLVW-CRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCV  234 (495)
Q Consensus       158 ~~~lp~~l~~~~~L~~L~L~~-c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i  234 (495)
                      -..+|. +..+++|++|+|++ |.+...+  .+.++++|+.|+|++|.+.. .....+.++++|++|+|++|.. ..+..
T Consensus        21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l-~~~~~   97 (347)
T 2ifg_A           21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLSFNAL-ESLSW   97 (347)
T ss_dssp             CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECCSSCC-SCCCS
T ss_pred             CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCCCCcc-ceeCH
Confidence            456888 77889999999996 8876544  46789999999999998842 1123467899999999998864 23222


Q ss_pred             c--CCCCccEEEecccc
Q 011021          235 S--KASKLKIMEIRSFS  249 (495)
Q Consensus       235 ~--~l~~L~~L~i~~c~  249 (495)
                      .  ...+|+.|.+.++.
T Consensus        98 ~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           98 KTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             TTTCSCCCCEEECCSSC
T ss_pred             HHcccCCceEEEeeCCC
Confidence            1  11237777776553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.76  E-value=0.0011  Score=65.42  Aligned_cols=168  Identities=17%  Similarity=0.141  Sum_probs=97.1

Q ss_pred             cccCcccccCCcceEEEEeccccCCC--CCccCCCCCcEEEeeeEee---ChHHHHHHHhcCCCccEEEEEecCCCcc--
Q 011021          159 YTLPQAIFSANSVTNLRLVWCRLEQP--FDSIMLCSLKKLTLERVCL---DEQMVQKLASECPLLEDLCFSNCWGLKH--  231 (495)
Q Consensus       159 ~~lp~~l~~~~~L~~L~L~~c~l~~~--~~~~~l~~L~~L~L~~~~~---~~~~l~~l~~~~p~Le~L~L~~c~~l~~--  231 (495)
                      ..++...|...+|+.+.+.. .+...  ..+.+|++|+.+++..+.+   ....    + .|+.|+++.+...  +..  
T Consensus       147 ~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~a----F-~~~~L~~l~lp~~--l~~I~  218 (401)
T 4fdw_A          147 KSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAST----F-VYAGIEEVLLPVT--LKEIG  218 (401)
T ss_dssp             CEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTT----T-TTCCCSEEECCTT--CCEEC
T ss_pred             cEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhh----E-eecccCEEEeCCc--hheeh
Confidence            34555555545788888876 22211  1567889999999986654   3222    2 3688999988743  332  


Q ss_pred             -eeecCCCCccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccCh----HHHHHHhh
Q 011021          232 -LCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFAD----NEFNHLIS  306 (495)
Q Consensus       232 -~~i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~  306 (495)
                       -...+|++|+.+.+......+..-+....+|+.+.+. .....-....+.+|++|+.+.+.++....    ......+.
T Consensus       219 ~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~  297 (401)
T 4fdw_A          219 SQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE  297 (401)
T ss_dssp             TTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT
T ss_pred             hhHhhCCCCCCEEecCCCccCccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh
Confidence             2344678888888865321111111223578888886 22211112235578999999998765431    01123356


Q ss_pred             cCCCCcEEEecCCCCCccccc----cccccceEEe
Q 011021          307 KFPSLEDLFVTRCCLPGKIKI----SSNQLKNLLF  337 (495)
Q Consensus       307 ~~~~L~~L~L~~~~~~~~i~~----~~~~L~~L~l  337 (495)
                      +|++|+.+.+..  .+..+..    .+.+|+.+.+
T Consensus       298 ~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~l  330 (401)
T 4fdw_A          298 GCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTI  330 (401)
T ss_dssp             TCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEE
T ss_pred             CCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEE
Confidence            788999998874  2444432    2345555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.73  E-value=0.00082  Score=57.93  Aligned_cols=82  Identities=15%  Similarity=0.020  Sum_probs=60.8

Q ss_pred             cCceEeEEEeecCCCccccc-CcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCc
Q 011021          142 NGVRELDFENITDENTVYTL-PQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  218 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L  218 (495)
                      .+++.|+  +..+  ....+ |..+..+++|++|+|++|.+...+  .+..+++|++|+|++|.+.. .....+..+++|
T Consensus        33 ~~L~~L~--Ls~N--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L  107 (174)
T 2r9u_A           33 TDKQRLW--LNNN--QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSL  107 (174)
T ss_dssp             TTCSEEE--CCSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             CCCcEEE--eCCC--CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce-eCHHHhccccCC
Confidence            4678887  5432  22344 445667899999999999987655  35789999999999998842 112336789999


Q ss_pred             cEEEEEecCC
Q 011021          219 EDLCFSNCWG  228 (495)
Q Consensus       219 e~L~L~~c~~  228 (495)
                      ++|++.+|+.
T Consensus       108 ~~L~L~~N~~  117 (174)
T 2r9u_A          108 THIYLYNNPW  117 (174)
T ss_dssp             SEEECCSSCB
T ss_pred             CEEEeCCCCc
Confidence            9999999864

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.67  E-value=0.00094  Score=57.30  Aligned_cols=82  Identities=17%  Similarity=0.028  Sum_probs=60.1

Q ss_pred             cCceEeEEEeecCCCccccc-CcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCc
Q 011021          142 NGVRELDFENITDENTVYTL-PQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  218 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L  218 (495)
                      .+++.|+  +..+  ....+ |..+..+++|++|+|++|.+...+  .+.++++|++|+|++|.+..- ....+.++++|
T Consensus        30 ~~l~~L~--L~~N--~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L  104 (170)
T 3g39_A           30 TTTQVLY--LYDN--QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI-PRGAFDNLKSL  104 (170)
T ss_dssp             TTCSEEE--CCSS--CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred             CCCcEEE--cCCC--cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEe-CHHHhcCCCCC
Confidence            4677777  5432  23344 445667899999999999987655  357899999999999988421 12236789999


Q ss_pred             cEEEEEecCC
Q 011021          219 EDLCFSNCWG  228 (495)
Q Consensus       219 e~L~L~~c~~  228 (495)
                      ++|++.+|+.
T Consensus       105 ~~L~L~~N~~  114 (170)
T 3g39_A          105 THIWLLNNPW  114 (170)
T ss_dssp             CEEECCSSCB
T ss_pred             CEEEeCCCCC
Confidence            9999999864

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.19  E-value=0.0033  Score=61.86  Aligned_cols=76  Identities=9%  Similarity=0.118  Sum_probs=34.0

Q ss_pred             cCCcceEEEEeccc---cCCCC--CccCCCCCcEEEeeeE--eeChHHHHHHHhcCCCccEEEEEecCC-CcceeecCCC
Q 011021          167 SANSVTNLRLVWCR---LEQPF--DSIMLCSLKKLTLERV--CLDEQMVQKLASECPLLEDLCFSNCWG-LKHLCVSKAS  238 (495)
Q Consensus       167 ~~~~L~~L~L~~c~---l~~~~--~~~~l~~L~~L~L~~~--~~~~~~l~~l~~~~p~Le~L~L~~c~~-l~~~~i~~l~  238 (495)
                      .|.+|+.+.+..+.   +..-+  .+.++.+|+.+.+...  .++..    .+.+|+.|+.+.+..... ++.....+|.
T Consensus        85 ~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~~~I~~~----aF~~c~~L~~i~lp~~~~~I~~~~F~~c~  160 (394)
T 4gt6_A           85 NCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVTEIDSE----AFHHCEELDTVTIPEGVTSVADGMFSYCY  160 (394)
T ss_dssp             TCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTCSEECTT----TTTTCTTCCEEECCTTCCEECTTTTTTCT
T ss_pred             CCccCceEeecCCCCCeeeEechhhchhcccceeeccCCccceehhh----hhhhhcccccccccceeeeecccceeccc
Confidence            36677777665542   21111  3445556665554322  11211    134566666666643211 1112222445


Q ss_pred             CccEEEec
Q 011021          239 KLKIMEIR  246 (495)
Q Consensus       239 ~L~~L~i~  246 (495)
                      +|+.+.+.
T Consensus       161 ~L~~i~~~  168 (394)
T 4gt6_A          161 SLHTVTLP  168 (394)
T ss_dssp             TCCEEECC
T ss_pred             cccccccc
Confidence            55555554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.81  E-value=0.0052  Score=60.42  Aligned_cols=39  Identities=8%  Similarity=0.232  Sum_probs=19.3

Q ss_pred             HHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEe
Q 011021          394 KFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHT  439 (495)
Q Consensus       394 ~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~  439 (495)
                      ..+.+|++|+.+++  ..+-..+....|.++     ++|+.+.+..
T Consensus       337 ~aF~~c~~L~~i~l--p~~l~~I~~~aF~~C-----~~L~~i~lp~  375 (394)
T 4fs7_A          337 RSFRGCTSLSNINF--PLSLRKIGANAFQGC-----INLKKVELPK  375 (394)
T ss_dssp             TTTTTCTTCCEECC--CTTCCEECTTTBTTC-----TTCCEEEEEG
T ss_pred             HhccCCCCCCEEEE--CccccEehHHHhhCC-----CCCCEEEECC
Confidence            34566666664444  211111234455555     6666666653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.65  E-value=0.0028  Score=58.50  Aligned_cols=36  Identities=25%  Similarity=0.026  Sum_probs=17.3

Q ss_pred             CCcceEEEEeccccCCCC----CccCCCCCcEEEeeeEee
Q 011021          168 ANSVTNLRLVWCRLEQPF----DSIMLCSLKKLTLERVCL  203 (495)
Q Consensus       168 ~~~L~~L~L~~c~l~~~~----~~~~l~~L~~L~L~~~~~  203 (495)
                      +++|++|+|++|.+....    ....+++|+.|+|++|.+
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i  208 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL  208 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc
Confidence            345555555555544321    112455555555555555

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=95.13  E-value=0.0073  Score=58.13  Aligned_cols=81  Identities=19%  Similarity=0.111  Sum_probs=55.7

Q ss_pred             CceEeEEEeecCCCcccccC-cccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCcc
Q 011021          143 GVRELDFENITDENTVYTLP-QAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  219 (495)
Q Consensus       143 ~l~~L~l~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  219 (495)
                      ++++|+  +.. ......+| ..+..+++|++|+|++|.+...+  .+.++++|+.|+|++|.++.- ....+...+ |+
T Consensus        32 ~L~~L~--l~~-~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~-L~  106 (347)
T 2ifg_A           32 NLTELY--IEN-QQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL-SWKTVQGLS-LQ  106 (347)
T ss_dssp             CCSEEE--CCS-CSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC-CSTTTCSCC-CC
T ss_pred             CeeEEE--ccC-CCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcccee-CHHHcccCC-ce
Confidence            577777  532 01233445 45667899999999999886544  467899999999999988421 112233444 99


Q ss_pred             EEEEEecCC
Q 011021          220 DLCFSNCWG  228 (495)
Q Consensus       220 ~L~L~~c~~  228 (495)
                      .|++.+|..
T Consensus       107 ~l~l~~N~~  115 (347)
T 2ifg_A          107 ELVLSGNPL  115 (347)
T ss_dssp             EEECCSSCC
T ss_pred             EEEeeCCCc
Confidence            999998864

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=94.91  E-value=0.015  Score=53.56  Aligned_cols=79  Identities=15%  Similarity=0.098  Sum_probs=56.2

Q ss_pred             cCceEeEEEeecCCCcc-cccCcccccCCcceEEEEeccccCCCCCccCCC--CCcEEEeeeEeeCh------HHHHHHH
Q 011021          142 NGVRELDFENITDENTV-YTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLC--SLKKLTLERVCLDE------QMVQKLA  212 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~-~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~--~L~~L~L~~~~~~~------~~l~~l~  212 (495)
                      ..++.|+  +..+.... ..+|..+..+++|+.|+|++|.+........+.  +|++|+|++|.+..      .....++
T Consensus       170 ~~L~~L~--Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il  247 (267)
T 3rw6_A          170 PELLSLN--LSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR  247 (267)
T ss_dssp             TTCCEEE--CTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred             CCCCEEE--CCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence            5888888  65433222 245566667899999999999987643333344  99999999998843      3334677


Q ss_pred             hcCCCccEEE
Q 011021          213 SECPLLEDLC  222 (495)
Q Consensus       213 ~~~p~Le~L~  222 (495)
                      ..+|+|+.|+
T Consensus       248 ~~~P~L~~LD  257 (267)
T 3rw6_A          248 ERFPKLLRLD  257 (267)
T ss_dssp             HHCTTCCEES
T ss_pred             HHCcccCeEC
Confidence            8899998875

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=84.32  E-value=0.23  Score=43.16  Aligned_cols=94  Identities=15%  Similarity=0.124  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHH--cCceEeEEEeecC-C---CcccccCcccccCCcceEEEEeccccCCCC------CccCCCCCcEEEe
Q 011021          131 IVDRWIRLAVE--NGVRELDFENITD-E---NTVYTLPQAIFSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTL  198 (495)
Q Consensus       131 ~~~~wi~~a~~--~~l~~L~l~l~~~-~---~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~------~~~~l~~L~~L~L  198 (495)
                      +++..+..+..  ..+++|+  +... .   .+...+-..+....+|+.|+|++|.+....      ....-+.|++|+|
T Consensus        28 ~v~~~l~~ll~~n~~L~~L~--L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L  105 (197)
T 1pgv_A           28 DVESCINRLREDDTDLKEVN--INNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNV  105 (197)
T ss_dssp             CHHHHHHHHHTTCSSCCEEE--CTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEEC
T ss_pred             CHHHHHHHHHhcCCCccEEE--CCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEec
Confidence            56677776665  3566766  4321 1   111233334444567888888888765432      1223467888888


Q ss_pred             eeEeeChHHHHHHH---hcCCCccEEEEEec
Q 011021          199 ERVCLDEQMVQKLA---SECPLLEDLCFSNC  226 (495)
Q Consensus       199 ~~~~~~~~~l~~l~---~~~p~Le~L~L~~c  226 (495)
                      ++|.+++.+...+.   ..-..|++|+|.++
T Consensus       106 ~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          106 ESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             CSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             CCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            88888666655543   33445666666544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=83.19  E-value=0.57  Score=45.58  Aligned_cols=122  Identities=12%  Similarity=0.119  Sum_probs=68.6

Q ss_pred             ccCCcceEEEEeccccCCC-CCccCCCCCcEEEeeeE--eeChHHHHHHHhcCCCccEEEEEec-CCCcceeecCCCCcc
Q 011021          166 FSANSVTNLRLVWCRLEQP-FDSIMLCSLKKLTLERV--CLDEQMVQKLASECPLLEDLCFSNC-WGLKHLCVSKASKLK  241 (495)
Q Consensus       166 ~~~~~L~~L~L~~c~l~~~-~~~~~l~~L~~L~L~~~--~~~~~~l~~l~~~~p~Le~L~L~~c-~~l~~~~i~~l~~L~  241 (495)
                      ..|..|+.+.+........ ..+.++++|+.+.+...  .+.+.    .+.+|++|+++.|... ..++.-...+|.+|+
T Consensus       262 ~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~----aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~  337 (394)
T 4gt6_A          262 DSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPES----VFAGCISLKSIDIPEGITQILDDAFAGCEQLE  337 (394)
T ss_dssp             TTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCEEECCTTCCEECTTTTTTCTTCC
T ss_pred             eecccccEEecccccceecCcccccccccccccCCCcccccCce----eecCCCCcCEEEeCCcccEehHhHhhCCCCCC
Confidence            3478899998876432221 14667889999988642  22332    3678999999998643 112333455788999


Q ss_pred             EEEeccccccceEEEE-eCCcceEEEEeecCCCCceeEEeecCCCccEEEeecc
Q 011021          242 IMEIRSFSEEIEIVEI-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSV  294 (495)
Q Consensus       242 ~L~i~~c~~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  294 (495)
                      ++.+-.....+..-+. .|++|+.+.+.  +... ....+..+.+|+.+.+..+
T Consensus       338 ~i~ip~sv~~I~~~aF~~C~~L~~i~~~--~~~~-~~~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          338 RIAIPSSVTKIPESAFSNCTALNNIEYS--GSRS-QWNAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             EEEECTTCCBCCGGGGTTCTTCCEEEES--SCHH-HHHTCBCCCCC--------
T ss_pred             EEEECcccCEEhHhHhhCCCCCCEEEEC--Ccee-ehhhhhccCCCCEEEeCCC
Confidence            9988543212222222 67889998887  2211 1112345778888877543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=81.78  E-value=0.45  Score=41.31  Aligned_cols=62  Identities=11%  Similarity=0.169  Sum_probs=39.9

Q ss_pred             cCCcceEEEEecc-ccCCCC------CccCCCCCcEEEeeeEeeChHH---HHHHHhcCCCccEEEEEecCC
Q 011021          167 SANSVTNLRLVWC-RLEQPF------DSIMLCSLKKLTLERVCLDEQM---VQKLASECPLLEDLCFSNCWG  228 (495)
Q Consensus       167 ~~~~L~~L~L~~c-~l~~~~------~~~~l~~L~~L~L~~~~~~~~~---l~~l~~~~p~Le~L~L~~c~~  228 (495)
                      .-++|++|+|+++ .+....      ....-..|+.|+|++|.+++.+   +...+..-..|++|+|++|..
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I  110 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL  110 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence            3467888888875 554321      2234567888888888885443   334455667788888877764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=80.68  E-value=1.5  Score=35.11  Aligned_cols=42  Identities=24%  Similarity=0.081  Sum_probs=31.5

Q ss_pred             ccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEee
Q 011021          160 TLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL  203 (495)
Q Consensus       160 ~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~  203 (495)
                      .+|..+  .++|++|+|++|.+...+  .+..+++|++|+|.+|.+
T Consensus        24 ~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           24 SLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             cCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            556443  256899999999887654  456788899999998887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	495
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	2e-05
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	1e-04
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	0.001

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 12 ETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL 53
          E     D IS LP  +  +++S+L  K++ + +   + W  L
Sbjct: 11 EPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 17 MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPIL 60
           D I+ LP  I   + +YL  +++  +  +S+ WN++      L
Sbjct: 3  RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL 46

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 17 MDRISELPTF----IIHHLMSYLSAKEVARTSVLSKKWNQL 53
           D I+ LP      I  +++SYL AK +    ++ K+W ++
Sbjct: 8  RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	495
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.46
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.42
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.42
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.37
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.12
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.07
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.06
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.05
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.03
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.01
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.99
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.98
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.95
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.86
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.85
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.75
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.69
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.65
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.64
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.62
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.6
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.53
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.5
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.43
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.42
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.3
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.24
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.19
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.18
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.1
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.05
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.93
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.9
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.87
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.52
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.81
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.52
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.4
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.57
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.54
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.44
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.04
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.3

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.2e-14  Score=134.08  Aligned_cols=100  Identities=13%  Similarity=0.148  Sum_probs=64.8

Q ss_pred             CCCccEEEeecc--ccChHHHHHHhhcCCCCcEEEecCCCCCcccc----ccccccceEEeccCCCccEEeccCCcccee
Q 011021          283 SPHLKKLDLVSV--YFADNEFNHLISKFPSLEDLFVTRCCLPGKIK----ISSNQLKNLLFRSCKYLKVIDVDAPNLLLF  356 (495)
Q Consensus       283 ~~~L~~L~l~~~--~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~----~~~~~L~~L~l~~c~~l~~l~~~~p~L~~l  356 (495)
                      +++|+.|+++++  .+++..+..+..++|+|++|++++|..++.-.    ..+++|++|.+.+|.++..-.+        
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l--------  218 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL--------  218 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG--------
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHH--------
Confidence            578889988865  46777788888889999999999887654322    1356777788777766532111        


Q ss_pred             eecccccceEeecCCCCceEEEEEecccchhhhcchHHHhccCCccc
Q 011021          357 TYEFNPIPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIE  403 (495)
Q Consensus       357 ~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~  403 (495)
                              ..+.++++|+.|++..+..     -..+....+.++.|+
T Consensus       219 --------~~L~~~~~L~~L~l~~~~~-----d~~l~~l~~~lp~L~  252 (284)
T d2astb2         219 --------LELGEIPTLKTLQVFGIVP-----DGTLQLLKEALPHLQ  252 (284)
T ss_dssp             --------GGGGGCTTCCEEECTTSSC-----TTCHHHHHHHSTTSE
T ss_pred             --------HHHhcCCCCCEEeeeCCCC-----HHHHHHHHHhCcccc
Confidence                    0112467888887754322     233455556677665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=5.5e-15  Score=138.22  Aligned_cols=174  Identities=21%  Similarity=0.273  Sum_probs=94.8

Q ss_pred             CceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEe-eChHHHHHHHhcCCCcc
Q 011021          143 GVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVC-LDEQMVQKLASECPLLE  219 (495)
Q Consensus       143 ~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~~p~Le  219 (495)
                      ++++|+  +..+......++..+..|++|++|++++|.+....  ...++++|++|++++|. +++.++..+..+||+|+
T Consensus        47 ~L~~Ld--Ls~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          47 RVQHMD--LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CCCEEE--CTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCEEE--CCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            566666  43222222233333445677777777777654322  34466777777777754 36666666667777777


Q ss_pred             EEEEEecCCCcceee-----cCCCCccEEEecccccc-----ceEEEEeCCcceEEEEeecCC-CCceeEEeecCCCccE
Q 011021          220 DLCFSNCWGLKHLCV-----SKASKLKIMEIRSFSEE-----IEIVEISVPSLQQLTLLFYGA-RRPRVVEVARSPHLKK  288 (495)
Q Consensus       220 ~L~L~~c~~l~~~~i-----~~l~~L~~L~i~~c~~~-----l~~~~~~~p~L~~L~l~~~~~-~~~~~~~~~~~~~L~~  288 (495)
                      +|++++|..+....+     ..+++|++|.+.+|...     +..+...+|+|++|+++++.. .......+.++++|++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~  204 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  204 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence            777777765543211     13466777777665311     222223456666666653322 2222233445666666


Q ss_pred             EEeecc-ccChHHHHHHhhcCCCCcEEEecCC
Q 011021          289 LDLVSV-YFADNEFNHLISKFPSLEDLFVTRC  319 (495)
Q Consensus       289 L~l~~~-~~~~~~~~~l~~~~~~L~~L~L~~~  319 (495)
                      |++++| .+++..+.. +.++|+|+.|++.+|
T Consensus       205 L~L~~C~~i~~~~l~~-L~~~~~L~~L~l~~~  235 (284)
T d2astb2         205 LSLSRCYDIIPETLLE-LGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EECTTCTTCCGGGGGG-GGGCTTCCEEECTTS
T ss_pred             EECCCCCCCChHHHHH-HhcCCCCCEEeeeCC
Confidence            666654 355544433 245666666666665

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.42  E-value=2.7e-13  Score=132.02  Aligned_cols=290  Identities=13%  Similarity=0.065  Sum_probs=159.6

Q ss_pred             cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEE
Q 011021          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L  221 (495)
                      .++++|+  +..+..  ..+ ..+..+++|++|++++|.++..+...++++|++|+++++.+.+-  .. ++++++|+.|
T Consensus        44 ~~l~~L~--l~~~~I--~~l-~gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i--~~-l~~l~~L~~L  115 (384)
T d2omza2          44 DQVTTLQ--ADRLGI--KSI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI--TP-LANLTNLTGL  115 (384)
T ss_dssp             TTCCEEE--CCSSCC--CCC-TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GG-GTTCTTCCEE
T ss_pred             CCCCEEE--CCCCCC--CCc-cccccCCCCCEEeCcCCcCCCCccccCCcccccccccccccccc--cc-cccccccccc
Confidence            5788888  543322  233 34667899999999999887766678899999999999988421  11 6789999999


Q ss_pred             EEEecCCCcceeecCCCCccEEEecccc----------c--cc-------------------------------eEEEEe
Q 011021          222 CFSNCWGLKHLCVSKASKLKIMEIRSFS----------E--EI-------------------------------EIVEIS  258 (495)
Q Consensus       222 ~L~~c~~l~~~~i~~l~~L~~L~i~~c~----------~--~l-------------------------------~~~~~~  258 (495)
                      ++.++.............+..+....+.          .  ..                               ......
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (384)
T d2omza2         116 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK  195 (384)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccc
Confidence            9987754322111112222222221110          0  00                               000012


Q ss_pred             CCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcccc-ccccccceEEe
Q 011021          259 VPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK-ISSNQLKNLLF  337 (495)
Q Consensus       259 ~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~-~~~~~L~~L~l  337 (495)
                      .++++.+.++.+.....  ...+.+++|++|+++++.+++-   ..+..+++|+.|++.+|...+... ...++|+.|.+
T Consensus       196 l~~~~~l~l~~n~i~~~--~~~~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l  270 (384)
T d2omza2         196 LTNLESLIATNNQISDI--TPLGILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL  270 (384)
T ss_dssp             CTTCSEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred             ccccceeeccCCccCCC--CcccccCCCCEEECCCCCCCCc---chhhcccccchhccccCccCCCCcccccccCCEeec
Confidence            34555555553222111  1133456677777776666552   123556777777777663221111 13456666666


Q ss_pred             ccCCCccEE-e-ccCCccceeeecccccc--eEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecc
Q 011021          338 RSCKYLKVI-D-VDAPNLLLFTYEFNPIP--IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTK  413 (495)
Q Consensus       338 ~~c~~l~~l-~-~~~p~L~~l~~~~~~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~  413 (495)
                      +.+.- ..+ . ...+.++.+...++.+.  .....+++++.++++.+..      ..++ .++++++|++|+++.+...
T Consensus       271 ~~~~l-~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l------~~l~-~l~~l~~L~~L~L~~n~l~  342 (384)
T d2omza2         271 GANQI-SNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI------SDIS-PVSSLTKLQRLFFANNKVS  342 (384)
T ss_dssp             CSSCC-CCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCC------SCCG-GGGGCTTCCEEECCSSCCC
T ss_pred             cCccc-CCCCccccccccccccccccccccccccchhcccCeEECCCCCC------CCCc-ccccCCCCCEEECCCCCCC
Confidence            54431 111 1 12444555555554432  2234567777777754332      2232 2677888887766433332


Q ss_pred             eecccccccccCCCCCCccceeEEEecCCCccHHHHHHHHhhhccCCeeEEe
Q 011021          414 VLYNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVN  465 (495)
Q Consensus       414 ~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l~~~~~l~~l~i~  465 (495)
                      .+   ..+.++     ++|++|++++|+- ...+.    +..+++|++|.|.
T Consensus       343 ~l---~~l~~l-----~~L~~L~l~~N~l-~~l~~----l~~l~~L~~L~L~  381 (384)
T d2omza2         343 DV---SSLANL-----TNINWLSAGHNQI-SDLTP----LANLTRITQLGLN  381 (384)
T ss_dssp             CC---GGGGGC-----TTCCEEECCSSCC-CBCGG----GTTCTTCSEEECC
T ss_pred             CC---hhHcCC-----CCCCEEECCCCcC-CCChh----hccCCCCCEeeCC
Confidence            22   346666     7888888887753 23321    4456788888774

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.37  E-value=7.5e-13  Score=128.77  Aligned_cols=269  Identities=16%  Similarity=0.118  Sum_probs=174.2

Q ss_pred             cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEE
Q 011021          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L  221 (495)
                      +++++|+  +..+.  -..+|. +..+++|++|++++|.+.......++++|+.|+++++...+...   ......+..+
T Consensus        66 ~nL~~L~--Ls~N~--l~~l~~-l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~~~~~~~~~~~---~~~~~~~~~~  137 (384)
T d2omza2          66 NNLTQIN--FSNNQ--LTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP---LKNLTNLNRL  137 (384)
T ss_dssp             TTCCEEE--CCSSC--CCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG---GTTCTTCSEE
T ss_pred             CCCCEEe--CcCCc--CCCCcc-ccCCcccccccccccccccccccccccccccccccccccccccc---cccccccccc
Confidence            6899998  65432  234443 77899999999999998765567899999999999887732211   2233444444


Q ss_pred             EEEecCC-------------------------------------------CcceeecCCCCccEEEecccc-ccceEEEE
Q 011021          222 CFSNCWG-------------------------------------------LKHLCVSKASKLKIMEIRSFS-EEIEIVEI  257 (495)
Q Consensus       222 ~L~~c~~-------------------------------------------l~~~~i~~l~~L~~L~i~~c~-~~l~~~~~  257 (495)
                      ....+..                                           ........+++++.+.+.++. ..+.. ..
T Consensus       138 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~-~~  216 (384)
T d2omza2         138 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LG  216 (384)
T ss_dssp             EEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GG
T ss_pred             ccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc-cc
Confidence            4433210                                           000112246788888888764 12111 12


Q ss_pred             eCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcccc-ccccccceEE
Q 011021          258 SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK-ISSNQLKNLL  336 (495)
Q Consensus       258 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~-~~~~~L~~L~  336 (495)
                      ..++|++|+++++....  ...++.+++|+.|++.++.+++-.  . +..+++|+.|+++++...+..+ ...+.++.+.
T Consensus       217 ~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~--~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~  291 (384)
T d2omza2         217 ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA--P-LSGLTKLTELKLGANQISNISPLAGLTALTNLE  291 (384)
T ss_dssp             GCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--G-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred             ccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCCC--c-ccccccCCEeeccCcccCCCCcccccccccccc
Confidence            46789999998544322  224567899999999999887622  1 4678999999998774322111 2345667776


Q ss_pred             eccCCCccEEe--ccCCccceeeecccccc--eEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEec
Q 011021          337 FRSCKYLKVID--VDAPNLLLFTYEFNPIP--IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYST  412 (495)
Q Consensus       337 l~~c~~l~~l~--~~~p~L~~l~~~~~~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~  412 (495)
                      +..+. +..+.  ..+++++.++++++.+.  ..+..+++|++|+++.+.      +..++ .++++++|++|+++....
T Consensus       292 ~~~n~-l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~------l~~l~-~l~~l~~L~~L~l~~N~l  363 (384)
T d2omza2         292 LNENQ-LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNK------VSDVS-SLANLTNINWLSAGHNQI  363 (384)
T ss_dssp             CCSSC-CSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSC------CCCCG-GGGGCTTCCEEECCSSCC
T ss_pred             ccccc-cccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCC------CCCCh-hHcCCCCCCEEECCCCcC
Confidence            66543 22221  33778888888888765  235678999999996543      33344 478899999777754433


Q ss_pred             ceecccccccccCCCCCCccceeEEEec
Q 011021          413 KVLYNLDELSECSPSLPLQVENLELHTN  440 (495)
Q Consensus       413 ~~~~~p~~~~~~~~~~p~~L~~L~l~~~  440 (495)
                      ..+  + .+.++     ++|+.|+|++|
T Consensus       364 ~~l--~-~l~~l-----~~L~~L~L~~N  383 (384)
T d2omza2         364 SDL--T-PLANL-----TRITQLGLNDQ  383 (384)
T ss_dssp             CBC--G-GGTTC-----TTCSEEECCCE
T ss_pred             CCC--h-hhccC-----CCCCEeeCCCC
Confidence            333  2 26666     89999999876

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.12  E-value=4e-11  Score=107.59  Aligned_cols=163  Identities=14%  Similarity=0.112  Sum_probs=79.3

Q ss_pred             CCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEecc
Q 011021          168 ANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRS  247 (495)
Q Consensus       168 ~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~  247 (495)
                      +.+|+.|++.+|.+....+...+++|++|+++++.+++-  .. +..++.|+++.+.+|..-.--.+.++++|+.+.+.+
T Consensus        40 l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~--~~-l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~  116 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDL--AP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTS  116 (227)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTT
T ss_pred             cCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecc--cc-cccccccccccccccccccccccccccccccccccc
Confidence            455566666666554433445566666666666655221  11 455666666666655432212234556666666655


Q ss_pred             ccccceEEE-EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcccc
Q 011021          248 FSEEIEIVE-ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK  326 (495)
Q Consensus       248 c~~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~  326 (495)
                      |. ...... ...+.++.+.++.+...  ....+.++++|+.|++.++.+++..  . +.++++|+.|++++|. ++.+.
T Consensus       117 ~~-~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~--~-l~~l~~L~~L~Ls~n~-l~~l~  189 (227)
T d1h6ua2         117 TQ-ITDVTPLAGLSNLQVLYLDLNQIT--NISPLAGLTNLQYLSIGNAQVSDLT--P-LANLSKLTTLKADDNK-ISDIS  189 (227)
T ss_dssp             SC-CCCCGGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC-CCCCG
T ss_pred             cc-ccccchhccccchhhhhchhhhhc--hhhhhccccccccccccccccccch--h-hcccccceecccCCCc-cCCCh
Confidence            54 110000 12345555555422221  1122345666777777666654411  1 3456777777776652 33332


Q ss_pred             --ccccccceEEeccC
Q 011021          327 --ISSNQLKNLLFRSC  340 (495)
Q Consensus       327 --~~~~~L~~L~l~~c  340 (495)
                        ..+++|+.|.+++|
T Consensus       190 ~l~~l~~L~~L~Ls~N  205 (227)
T d1h6ua2         190 PLASLPNLIEVHLKNN  205 (227)
T ss_dssp             GGGGCTTCCEEECTTS
T ss_pred             hhcCCCCCCEEECcCC
Confidence              12344455544444

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.07  E-value=3.9e-12  Score=120.28  Aligned_cols=79  Identities=18%  Similarity=0.097  Sum_probs=52.7

Q ss_pred             CcceEEEEeccccCCC----CCccCCCCCcEEEeeeE-eeChHHHHHHHhcCCCccEEEEEecCCCcce--eecCCCCcc
Q 011021          169 NSVTNLRLVWCRLEQP----FDSIMLCSLKKLTLERV-CLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLK  241 (495)
Q Consensus       169 ~~L~~L~L~~c~l~~~----~~~~~l~~L~~L~L~~~-~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~--~i~~l~~L~  241 (495)
                      .++++|+|+++.+...    ...+++++|++|+|+++ .+.+ .++.-+.++++|++|+|++|...+..  ....+++|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g-~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccc-ccccccccccccchhhhccccccccccccccchhhhc
Confidence            3689999999877532    26778999999999874 4432 13334678889999999988643211  122455666


Q ss_pred             EEEeccc
Q 011021          242 IMEIRSF  248 (495)
Q Consensus       242 ~L~i~~c  248 (495)
                      .+++..+
T Consensus       129 ~l~l~~N  135 (313)
T d1ogqa_         129 TLDFSYN  135 (313)
T ss_dssp             EEECCSS
T ss_pred             ccccccc
Confidence            6666554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.06  E-value=1.3e-10  Score=109.20  Aligned_cols=250  Identities=16%  Similarity=0.086  Sum_probs=137.9

Q ss_pred             cccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceee
Q 011021          157 TVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCV  234 (495)
Q Consensus       157 ~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i  234 (495)
                      .-..+|..+.  +++++|+|++|.++..+  .+.++++|++|+++++.+..- ....+.+++.|+.|++.+|. ++.+..
T Consensus        21 ~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i-~~~~f~~l~~L~~L~l~~n~-l~~l~~   96 (305)
T d1xkua_          21 GLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKNQ-LKELPE   96 (305)
T ss_dssp             CCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSC-CSBCCS
T ss_pred             CCCccCCCCC--CCCCEEECcCCcCCCcChhHhhcccccccccccccccccc-chhhhhCCCccCEecccCCc-cCcCcc
Confidence            3456777664  67999999999886654  467899999999999887321 12236789999999999885 344433


Q ss_pred             cCCCCccEEEeccccccceEEE---E-eCCcceEEEEeecCCC--CceeEEeecCCCccEEEeeccccChHHHHHHhhcC
Q 011021          235 SKASKLKIMEIRSFSEEIEIVE---I-SVPSLQQLTLLFYGAR--RPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKF  308 (495)
Q Consensus       235 ~~l~~L~~L~i~~c~~~l~~~~---~-~~p~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~  308 (495)
                      ...+.++.|....+.  +..+.   . ..+.+..+....+...  ......+..+++|+.+++.++.++.-  .  ...+
T Consensus        97 ~~~~~l~~L~~~~n~--l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l--~--~~~~  170 (305)
T d1xkua_          97 KMPKTLQELRVHENE--ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI--P--QGLP  170 (305)
T ss_dssp             SCCTTCCEEECCSSC--CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC--C--SSCC
T ss_pred             chhhhhhhhhccccc--hhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc--C--cccC
Confidence            334677777776653  11111   1 2333444444321111  01111234456666666666554331  0  1134


Q ss_pred             CCCcEEEecCCCCCccccccccccceEEeccCCCccEEeccCCccceeeecccccc----eEeecCCCCceEEEEEeccc
Q 011021          309 PSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIP----IISINVPCPWKVSFVCKGVL  384 (495)
Q Consensus       309 ~~L~~L~L~~~~~~~~i~~~~~~L~~L~l~~c~~l~~l~~~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~i~~~~~~  384 (495)
                      ++|+.|++.++.........+                  ..++.++++.++++.+.    ..+.++++|++|+++.+.  
T Consensus       171 ~~L~~L~l~~n~~~~~~~~~~------------------~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~--  230 (305)
T d1xkua_         171 PSLTELHLDGNKITKVDAASL------------------KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK--  230 (305)
T ss_dssp             TTCSEEECTTSCCCEECTGGG------------------TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC--
T ss_pred             CccCEEECCCCcCCCCChhHh------------------hccccccccccccccccccccccccccccceeeeccccc--
Confidence            566666666553222211111                  11233333444433321    123357888888885432  


Q ss_pred             chhhhcchHHHhccCCccceEEEEEEecceecccccccccC-CCCCCccceeEEEecC
Q 011021          385 NTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECS-PSLPLQVENLELHTNV  441 (495)
Q Consensus       385 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~-~~~p~~L~~L~l~~~~  441 (495)
                          +..++..+.++++|+.|+++....+.+ ..+.|.... ...+++++.|.+++|+
T Consensus       231 ----L~~lp~~l~~l~~L~~L~Ls~N~i~~i-~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         231 ----LVKVPGGLADHKYIQVVYLHNNNISAI-GSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             ----CSSCCTTTTTCSSCCEEECCSSCCCCC-CTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ----ccccccccccccCCCEEECCCCccCcc-ChhhccCcchhcccCCCCEEECCCCc
Confidence                445667788899999776643333322 222232110 0233778899999887

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.05  E-value=1.1e-10  Score=102.47  Aligned_cols=143  Identities=14%  Similarity=0.086  Sum_probs=63.1

Q ss_pred             CcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEeccc
Q 011021          169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSF  248 (495)
Q Consensus       169 ~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c  248 (495)
                      +++++|++++|.+....+...+++|++|+++++.+++-  .. +.++|+|++|.+.+|.......+.++++|+.|.+.+|
T Consensus        40 ~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~--~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~  116 (199)
T d2omxa2          40 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN  116 (199)
T ss_dssp             TTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred             cCCCEEECCCCCCCCccccccCCCcCcCccccccccCc--cc-ccCCccccccccccccccccccccccccccccccccc
Confidence            34444444444443322333444455555544444211  01 3444455555554443322222334444555544444


Q ss_pred             cccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCC
Q 011021          249 SEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (495)
Q Consensus       249 ~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~  319 (495)
                      ..........+++|+.|+++.+....  ...+..+++|+.|++.++.+++-  .. +.++++|+.|++++|
T Consensus       117 ~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~l--~~-l~~l~~L~~L~ls~N  182 (199)
T d2omxa2         117 QITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDL--KP-LANLTTLERLDISSN  182 (199)
T ss_dssp             CCCCCGGGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSS
T ss_pred             ccccccccchhhhhHHhhhhhhhhcc--cccccccccccccccccccccCC--cc-ccCCCCCCEEECCCC
Confidence            30000000123455555554222211  11244566777777776666541  11 356677777777766

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.03  E-value=3e-10  Score=101.74  Aligned_cols=181  Identities=14%  Similarity=0.141  Sum_probs=130.0

Q ss_pred             cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEE
Q 011021          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L  221 (495)
                      .++++|.  +..+.  -..++ .+..+++|++|++++|.+........+++|++++++++.+++  +.. +.+++.|+.+
T Consensus        41 ~~L~~L~--l~~~~--i~~l~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~--i~~-l~~l~~L~~l  112 (227)
T d1h6ua2          41 DGITTLS--AFGTG--VTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN--VSA-IAGLQSIKTL  112 (227)
T ss_dssp             HTCCEEE--CTTSC--CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC--CGG-GTTCTTCCEE
T ss_pred             CCcCEEE--CCCCC--CCcch-hHhcCCCCcEeecCCceeeccccccccccccccccccccccc--ccc-cccccccccc
Confidence            5788888  65432  23453 477899999999999988765567899999999999998742  222 5689999999


Q ss_pred             EEEecCCCcceeecCCCCccEEEeccccccceEE-EEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHH
Q 011021          222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIV-EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE  300 (495)
Q Consensus       222 ~L~~c~~l~~~~i~~l~~L~~L~i~~c~~~l~~~-~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  300 (495)
                      .+.+|.......+...+.++.+.+..+. ..... ...+++|+.|.++.+....  ...++++++|++|+++++.+++  
T Consensus       113 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~Ls~n~l~~--  187 (227)
T d1h6ua2         113 DLTSTQITDVTPLAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNKISD--  187 (227)
T ss_dssp             ECTTSCCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCC--CGGGTTCTTCCEEECCSSCCCC--
T ss_pred             ccccccccccchhccccchhhhhchhhh-hchhhhhcccccccccccccccccc--chhhcccccceecccCCCccCC--
Confidence            9999876554455566899999988775 11111 1367889999998544322  2336789999999999998876  


Q ss_pred             HHHHhhcCCCCcEEEecCCCCCcccc--ccccccceEEe
Q 011021          301 FNHLISKFPSLEDLFVTRCCLPGKIK--ISSNQLKNLLF  337 (495)
Q Consensus       301 ~~~l~~~~~~L~~L~L~~~~~~~~i~--~~~~~L~~L~l  337 (495)
                      +.. +.++++|+.|++++|. ++.++  ..+++|+.|++
T Consensus       188 l~~-l~~l~~L~~L~Ls~N~-lt~i~~l~~l~~L~~L~l  224 (227)
T d1h6ua2         188 ISP-LASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTL  224 (227)
T ss_dssp             CGG-GGGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEE
T ss_pred             Chh-hcCCCCCCEEECcCCc-CCCCcccccCCCCCEEEe
Confidence            222 5789999999999983 55543  13445555544

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=7.3e-11  Score=73.80  Aligned_cols=35  Identities=26%  Similarity=0.449  Sum_probs=32.9

Q ss_pred             CCCCChHHHHHHhcCCChhHHHhhhcccccchhhh
Q 011021           20 ISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLY   54 (495)
Q Consensus        20 is~LPd~vL~~Ils~L~~~d~~rts~lSkrWr~lw   54 (495)
                      ++.||+|++.+||+|||.+|+++++.|||+|+++-
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~   35 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   35 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            46899999999999999999999999999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.99  E-value=3.6e-10  Score=98.99  Aligned_cols=158  Identities=18%  Similarity=0.173  Sum_probs=117.5

Q ss_pred             cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEE
Q 011021          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L  221 (495)
                      .++++|+  +..+..  ..++ .+..+++|++|++++|.+....+..++++|++|+++++.+..  +.. +.+++.|++|
T Consensus        40 ~~l~~L~--l~~~~i--~~l~-~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~--~~~-l~~l~~L~~L  111 (199)
T d2omxa2          40 DQVTTLQ--ADRLGI--KSID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD--ITP-LANLTNLTGL  111 (199)
T ss_dssp             TTCCEEE--CTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--CGG-GTTCTTCSEE
T ss_pred             cCCCEEE--CCCCCC--CCcc-ccccCCCcCcCccccccccCcccccCCccccccccccccccc--ccc-cccccccccc
Confidence            5788888  543322  2333 466789999999999998776567899999999999998732  111 6789999999


Q ss_pred             EEEecCCCcceeecCCCCccEEEeccccccceEEE--EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChH
Q 011021          222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVE--ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN  299 (495)
Q Consensus       222 ~L~~c~~l~~~~i~~l~~L~~L~i~~c~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  299 (495)
                      .+.+|.......+.++++|+.|++++|.  +..+.  ...++|+.|++.++....  ...++++++|++|+++++.+++ 
T Consensus       112 ~l~~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~l~~~~~L~~L~l~~n~l~~--l~~l~~l~~L~~L~ls~N~i~~-  186 (199)
T d2omxa2         112 TLFNNQITDIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQLNFSSNQVTD--LKPLANLTTLERLDISSNKVSD-  186 (199)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEECCSSC--CCCCGGGTTCTTCSEEECCSSCCCC--CGGGTTCTTCCEEECCSSCCCC-
T ss_pred             cccccccccccccchhhhhHHhhhhhhh--hcccccccccccccccccccccccC--CccccCCCCCCEEECCCCCCCC-
Confidence            9999877655556678999999999885  22222  257899999998544322  2236789999999999999876 


Q ss_pred             HHHHHhhcCCCCcEE
Q 011021          300 EFNHLISKFPSLEDL  314 (495)
Q Consensus       300 ~~~~l~~~~~~L~~L  314 (495)
                       +. .+..+++|++|
T Consensus       187 -i~-~l~~L~~L~~L  199 (199)
T d2omxa2         187 -IS-VLAKLTNLESL  199 (199)
T ss_dssp             -CG-GGGGCTTCSEE
T ss_pred             -Cc-cccCCCCCCcC
Confidence             22 24678899876

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.98  E-value=3.4e-10  Score=100.02  Aligned_cols=141  Identities=16%  Similarity=0.164  Sum_probs=63.5

Q ss_pred             cceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEecccc
Q 011021          170 SVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS  249 (495)
Q Consensus       170 ~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c~  249 (495)
                      +|++|++++|.+....+...+++|++|+|+++.+++  +.. ++.+++|++|++++|..-.-..+.++++|+.|.+.+|.
T Consensus        47 ~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~--l~~-~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~  123 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--IKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG  123 (210)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSC
T ss_pred             CccEEECcCCCCCCchhHhhCCCCCEEeCCCccccC--ccc-cccCcccccccccccccccccccccccccccccccccc
Confidence            444455555444433333445555555555554421  111 23455555555555432111123334555555555443


Q ss_pred             -ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCC
Q 011021          250 -EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (495)
Q Consensus       250 -~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~  319 (495)
                       ..+.. ....++++.++++++....  ...+..+++|+.++++++.+++-  .. +.++++|+.|++++|
T Consensus       124 ~~~~~~-l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i--~~-l~~l~~L~~L~Ls~N  188 (210)
T d1h6ta2         124 ISDING-LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKN  188 (210)
T ss_dssp             CCCCGG-GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSS
T ss_pred             cccccc-ccccccccccccccccccc--ccccccccccccccccccccccc--cc-ccCCCCCCEEECCCC
Confidence             01100 0123455555554322211  11233566677777766666541  11 345667777777665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.95  E-value=1.9e-09  Score=102.66  Aligned_cols=283  Identities=21%  Similarity=0.212  Sum_probs=150.6

Q ss_pred             HHHHHcCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcC-
Q 011021          137 RLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASEC-  215 (495)
Q Consensus       137 ~~a~~~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~-  215 (495)
                      ......++++|+  +...  .-..+|+.   .++|++|+++++.++..+  ..+.+|+.|++.++.++.      +..+ 
T Consensus        33 ~~c~~~~l~~Ld--Ls~~--~L~~lp~~---~~~L~~L~Ls~N~l~~lp--~~~~~L~~L~l~~n~l~~------l~~lp   97 (353)
T d1jl5a_          33 RDCLDRQAHELE--LNNL--GLSSLPEL---PPHLESLVASCNSLTELP--ELPQSLKSLLVDNNNLKA------LSDLP   97 (353)
T ss_dssp             HHHHHHTCSEEE--CTTS--CCSCCCSC---CTTCSEEECCSSCCSSCC--CCCTTCCEEECCSSCCSC------CCSCC
T ss_pred             HHHHHcCCCEEE--eCCC--CCCCCCCC---CCCCCEEECCCCCCcccc--cchhhhhhhhhhhcccch------hhhhc
Confidence            334446888888  5432  23467754   468999999999887644  345789999999987732      1223 


Q ss_pred             CCccEEEEEecCCCcceeecCCCCccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccc
Q 011021          216 PLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY  295 (495)
Q Consensus       216 p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  295 (495)
                      +.|++|++++|....-.....+++|+.|++.++.  ........+.+..+.+.....  .....++.++.++.+++.++.
T Consensus        98 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~~~--~~~~~~~~~~l~~l~~~~~~~--~~~~~l~~l~~l~~L~l~~n~  173 (353)
T d1jl5a_          98 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS--LKKLPDLPPSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNS  173 (353)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCC--SSCCCCTTCTTCCEEECCSSC
T ss_pred             cccccccccccccccccchhhhccceeecccccc--ccccccccccccchhhccccc--cccccccccccceeccccccc
Confidence            4699999998864322234467899999998775  222222345566666552211  112233455666666665443


Q ss_pred             cCh---------------HHHH--HHhhcCCCCcEEEecCCCCCccccccccccceEEeccCCC---------ccEEecc
Q 011021          296 FAD---------------NEFN--HLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKY---------LKVIDVD  349 (495)
Q Consensus       296 ~~~---------------~~~~--~l~~~~~~L~~L~L~~~~~~~~i~~~~~~L~~L~l~~c~~---------l~~l~~~  349 (495)
                      ...               ....  .....++.|+.+.+..+.. ..++....++..+.+.....         +......
T Consensus       174 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~  252 (353)
T d1jl5a_         174 LKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLL-KTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVS  252 (353)
T ss_dssp             CSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC-SSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            211               0000  0123467778887776532 22222333444443332211         1111110


Q ss_pred             ---C-------CccceeeecccccceEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccc
Q 011021          350 ---A-------PNLLLFTYEFNPIPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLD  419 (495)
Q Consensus       350 ---~-------p~L~~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~  419 (495)
                         .       .........+..++.....+++|++|+++.+.      +..++.   .+++|++|+++.+....+  |+
T Consensus       253 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~------l~~lp~---~~~~L~~L~L~~N~L~~l--~~  321 (353)
T d1jl5a_         253 ENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK------LIELPA---LPPRLERLIASFNHLAEV--PE  321 (353)
T ss_dssp             SSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC------CSCCCC---CCTTCCEEECCSSCCSCC--CC
T ss_pred             cccccccccccchhcccccccCccccccccCCCCCEEECCCCc------cCcccc---ccCCCCEEECCCCcCCcc--cc
Confidence               0       11111222222222222346788988885433      333442   356788776643333322  32


Q ss_pred             cccccCCCCCCccceeEEEecCCCccHHHHHHHHhhhccCCeeEEe
Q 011021          420 ELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVN  465 (495)
Q Consensus       420 ~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l~~~~~l~~l~i~  465 (495)
                      .        |++|++|++++|+ ...+|.+      ...++.|.++
T Consensus       322 ~--------~~~L~~L~L~~N~-L~~lp~~------~~~L~~L~~~  352 (353)
T d1jl5a_         322 L--------PQNLKQLHVEYNP-LREFPDI------PESVEDLRMN  352 (353)
T ss_dssp             C--------CTTCCEEECCSSC-CSSCCCC------CTTCCEEECC
T ss_pred             c--------cCCCCEEECcCCc-CCCCCcc------ccccCeeECc
Confidence            1        2678899998886 4444431      1257777764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.89  E-value=9.4e-10  Score=97.09  Aligned_cols=162  Identities=16%  Similarity=0.113  Sum_probs=118.8

Q ss_pred             cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEE
Q 011021          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L  221 (495)
                      ..+++++  +..+.  ...++ .+..+++|++|++++|.+........+++|+.|+++++.+++  ++. +.++|.|+.|
T Consensus        46 ~~L~~L~--l~~~~--i~~l~-~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L  117 (210)
T d1h6ta2          46 NSIDQII--ANNSD--IKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSL  117 (210)
T ss_dssp             HTCCEEE--CTTSC--CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEE
T ss_pred             cCccEEE--CcCCC--CCCch-hHhhCCCCCEEeCCCccccCccccccCccccccccccccccc--ccc-cccccccccc
Confidence            3677777  54322  22333 366789999999999988765567789999999999998853  222 6789999999


Q ss_pred             EEEecCCCcceeecCCCCccEEEeccccccceEE--EEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChH
Q 011021          222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIV--EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN  299 (495)
Q Consensus       222 ~L~~c~~l~~~~i~~l~~L~~L~i~~c~~~l~~~--~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  299 (495)
                      ++.+|.......+.++++|+.+.+..+.  +...  ...+++|+.++++.+....  ...++++++|++|+++++.+++ 
T Consensus       118 ~l~~~~~~~~~~l~~l~~l~~l~~~~n~--l~~~~~~~~l~~L~~l~l~~n~l~~--i~~l~~l~~L~~L~Ls~N~i~~-  192 (210)
T d1h6ta2         118 SLEHNGISDINGLVHLPQLESLYLGNNK--ITDITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISD-  192 (210)
T ss_dssp             ECTTSCCCCCGGGGGCTTCCEEECCSSC--CCCCGGGGGCTTCSEEECCSSCCCC--CGGGTTCTTCCEEECCSSCCCB-
T ss_pred             cccccccccccccccccccccccccccc--ccccccccccccccccccccccccc--cccccCCCCCCEEECCCCCCCC-
Confidence            9999876443445677899999998775  2111  1257899999998554432  2236789999999999999876 


Q ss_pred             HHHHHhhcCCCCcEEEecC
Q 011021          300 EFNHLISKFPSLEDLFVTR  318 (495)
Q Consensus       300 ~~~~l~~~~~~L~~L~L~~  318 (495)
                       +. -+.++++|+.|+|++
T Consensus       193 -l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 -LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -CG-GGTTCTTCSEEEEEE
T ss_pred             -Ch-hhcCCCCCCEEEccC
Confidence             22 257789999999874

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=5.1e-10  Score=102.78  Aligned_cols=156  Identities=19%  Similarity=0.179  Sum_probs=87.7

Q ss_pred             ccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcc-eee
Q 011021          158 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH-LCV  234 (495)
Q Consensus       158 ~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~-~~i  234 (495)
                      -..+|..+.  +++++|+|++|.+...+  .+.++++|++|+|+++.++.  ++. ...++.|++|++++|..... ..+
T Consensus        22 L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~--l~~-~~~l~~L~~L~Ls~N~l~~~~~~~   96 (266)
T d1p9ag_          22 LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQV-DGTLPVLGTLDLSHNQLQSLPLLG   96 (266)
T ss_dssp             CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--EEC-CSCCTTCCEEECCSSCCSSCCCCT
T ss_pred             CCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc--ccc-cccccccccccccccccccccccc
Confidence            345666553  57888888888775433  45678888888888887632  111 34678888888887754221 122


Q ss_pred             cCCCCccEEEecccc-ccceEE-EEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCc
Q 011021          235 SKASKLKIMEIRSFS-EEIEIV-EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLE  312 (495)
Q Consensus       235 ~~l~~L~~L~i~~c~-~~l~~~-~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~  312 (495)
                      .++++|+.|++.++. ..+... ....++++.|.+..+....-....+..+++++.++++++.++... .+.+..+++|+
T Consensus        97 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~-~~~~~~l~~L~  175 (266)
T d1p9ag_          97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP-AGLLNGLENLD  175 (266)
T ss_dssp             TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC-TTTTTTCTTCC
T ss_pred             ccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccC-ccccccccccc
Confidence            356777777777664 111111 113455666666533322211222334566666666666655421 12234566666


Q ss_pred             EEEecCC
Q 011021          313 DLFVTRC  319 (495)
Q Consensus       313 ~L~L~~~  319 (495)
                      .|+|++|
T Consensus       176 ~L~Ls~N  182 (266)
T d1p9ag_         176 TLLLQEN  182 (266)
T ss_dssp             EEECCSS
T ss_pred             eeecccC
Confidence            6666665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.85  E-value=1.6e-10  Score=108.88  Aligned_cols=104  Identities=18%  Similarity=0.114  Sum_probs=73.8

Q ss_pred             CceEeEEEeecCC-CcccccCcccccCCcceEEEEec-cccCC--CCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCc
Q 011021          143 GVRELDFENITDE-NTVYTLPQAIFSANSVTNLRLVW-CRLEQ--PFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  218 (495)
Q Consensus       143 ~l~~L~l~l~~~~-~~~~~lp~~l~~~~~L~~L~L~~-c~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L  218 (495)
                      +|.+|+  +.... .....+|..++++++|++|+|++ +.+..  +..++++++|++|+|+++.+... ....+..++.|
T Consensus        51 ~v~~L~--L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~-~~~~~~~~~~L  127 (313)
T d1ogqa_          51 RVNNLD--LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTL  127 (313)
T ss_dssp             CEEEEE--EECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTC
T ss_pred             EEEEEE--CCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccc-ccccccchhhh
Confidence            578888  54432 23457999999999999999997 45542  22678999999999999987321 12235678999


Q ss_pred             cEEEEEecCCCcce--eecCCCCccEEEecccc
Q 011021          219 EDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS  249 (495)
Q Consensus       219 e~L~L~~c~~l~~~--~i~~l~~L~~L~i~~c~  249 (495)
                      +.+++.+|.....+  .+.++++|+.+++.++.
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~  160 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred             cccccccccccccCchhhccCcccceeeccccc
Confidence            99999988643332  24456777777776653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=7.1e-10  Score=101.78  Aligned_cols=169  Identities=17%  Similarity=0.075  Sum_probs=120.6

Q ss_pred             cCceEeEEEeecCCCcccccCcc-cccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccE
Q 011021          142 NGVRELDFENITDENTVYTLPQA-IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED  220 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  220 (495)
                      +++++|+  +..+  .-..+|.. +..+++|++|+|++|.+...+..+.+++|++|+|++|.+..  ....+.+++.|+.
T Consensus        31 ~~l~~L~--Ls~N--~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~  104 (266)
T d1p9ag_          31 KDTTILH--LSEN--LLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTV  104 (266)
T ss_dssp             TTCCEEE--CTTS--CCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSS--CCCCTTTCTTCCE
T ss_pred             cCCCEEE--CcCC--cCCCcCHHHhhccccccccccccccccccccccccccccccccccccccc--ccccccccccccc
Confidence            4788888  5432  23455544 45689999999999988765556789999999999998832  1224678999999


Q ss_pred             EEEEecCCCc--ceeecCCCCccEEEeccccccceEEE----EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeecc
Q 011021          221 LCFSNCWGLK--HLCVSKASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSV  294 (495)
Q Consensus       221 L~L~~c~~l~--~~~i~~l~~L~~L~i~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  294 (495)
                      |+++++....  ......+++++.|.+.++.  +..+.    ...++|+.++++.+......+..++.+++|++|+|++|
T Consensus       105 L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~--l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N  182 (266)
T d1p9ag_         105 LDVSFNRLTSLPLGALRGLGELQELYLKGNE--LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN  182 (266)
T ss_dssp             EECCSSCCCCCCSSTTTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             ccccccccceeeccccccccccccccccccc--cceeccccccccccchhcccccccccccCccccccccccceeecccC
Confidence            9999987533  2233457899999999875  22222    24678999999855543323334567899999999999


Q ss_pred             ccChHHHHHHhhcCCCCcEEEecCCC
Q 011021          295 YFADNEFNHLISKFPSLEDLFVTRCC  320 (495)
Q Consensus       295 ~~~~~~~~~l~~~~~~L~~L~L~~~~  320 (495)
                      .++.  +..-+...++|+.|.|.+++
T Consensus       183 ~L~~--lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         183 SLYT--IPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CCCC--CCTTTTTTCCCSEEECCSCC
T ss_pred             CCcc--cChhHCCCCCCCEEEecCCC
Confidence            8874  22223457899999999874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=2.3e-09  Score=99.28  Aligned_cols=88  Identities=17%  Similarity=0.115  Sum_probs=46.9

Q ss_pred             ccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce---
Q 011021          158 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---  232 (495)
Q Consensus       158 ~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~---  232 (495)
                      -..+|..+.  +++++|+|++|.++..+  .+.++++|++|+++++.+..-. .....+++.++++.+..+..+..+   
T Consensus        23 L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~-~~~~~~~~~~~~l~~~~~~~~~~l~~~   99 (284)
T d1ozna_          23 LQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPA   99 (284)
T ss_dssp             CSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             CCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccc-cccccccccccccccccccccccccch
Confidence            345555443  46778888887765433  4567777777777777652111 112345566666655554443332   


Q ss_pred             eecCCCCccEEEeccc
Q 011021          233 CVSKASKLKIMEIRSF  248 (495)
Q Consensus       233 ~i~~l~~L~~L~i~~c  248 (495)
                      .+.++++|+.|++..+
T Consensus       100 ~~~~l~~L~~L~l~~n  115 (284)
T d1ozna_         100 TFHGLGRLHTLHLDRC  115 (284)
T ss_dssp             TTTTCTTCCEEECTTS
T ss_pred             hhcccccCCEEecCCc
Confidence            1223444444444443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=2.3e-09  Score=105.86  Aligned_cols=346  Identities=15%  Similarity=0.098  Sum_probs=175.7

Q ss_pred             ccceEEEEEeccCCCCChhHHHHHHHHHHHcCceEeEEEeecCCCc---ccccCcccccCCcceEEEEeccccCCCC---
Q 011021          112 CIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENT---VYTLPQAIFSANSVTNLRLVWCRLEQPF---  185 (495)
Q Consensus       112 ~l~~l~l~~~~~~~~~~~~~~~~wi~~a~~~~l~~L~l~l~~~~~~---~~~lp~~l~~~~~L~~L~L~~c~l~~~~---  185 (495)
                      .++++.++..    ......+..++  ...++++.++  +..+...   ...+...+..+++|++|+|++|.+...+   
T Consensus         3 ~l~~ld~~~~----~i~~~~~~~l~--~~l~~l~~L~--L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~   74 (460)
T d1z7xw1           3 DIQSLDIQCE----ELSDARWAELL--PLLQQCQVVR--LDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC   74 (460)
T ss_dssp             EEEEEEEESC----CCCHHHHHHHH--HHHTTCSEEE--EESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH
T ss_pred             CCCEEEeeCC----cCChHHHHHHH--HhCCCCCEEE--eCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHH
Confidence            3566666543    22222333333  2347888888  6544322   2345555677899999999998775321   


Q ss_pred             ---Cc-cCCCCCcEEEeeeEeeChHHH---HHHHhcCCCccEEEEEecCCCcc------------------ee-------
Q 011021          186 ---DS-IMLCSLKKLTLERVCLDEQMV---QKLASECPLLEDLCFSNCWGLKH------------------LC-------  233 (495)
Q Consensus       186 ---~~-~~l~~L~~L~L~~~~~~~~~l---~~l~~~~p~Le~L~L~~c~~l~~------------------~~-------  233 (495)
                         .. ...++|++|+|++|.+++.+.   ...+..++.|++|++.+|..-..                  ..       
T Consensus        75 l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  154 (460)
T d1z7xw1          75 VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS  154 (460)
T ss_dssp             HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred             HHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccc
Confidence               11 123579999999998865543   34466899999999998753100                  00       


Q ss_pred             ----------ecCCCCccEEEecccccc---ceEE----EEeCCcceEEEEeecCCCCc----eeEEeecCCCccEEEee
Q 011021          234 ----------VSKASKLKIMEIRSFSEE---IEIV----EISVPSLQQLTLLFYGARRP----RVVEVARSPHLKKLDLV  292 (495)
Q Consensus       234 ----------i~~l~~L~~L~i~~c~~~---l~~~----~~~~p~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~  292 (495)
                                +...+.++.+.+..+...   ....    .........+....++....    ....+...+.++.+.+.
T Consensus       155 ~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~  234 (460)
T d1z7xw1         155 AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG  234 (460)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred             hhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchh
Confidence                      001234444444433200   0000    00111233343332211100    01112345677778877


Q ss_pred             ccccChHHH----HHHhhcCCCCcEEEecCCCCCccc-------cccccccceEEeccCCCc----cE----EeccCCcc
Q 011021          293 SVYFADNEF----NHLISKFPSLEDLFVTRCCLPGKI-------KISSNQLKNLLFRSCKYL----KV----IDVDAPNL  353 (495)
Q Consensus       293 ~~~~~~~~~----~~l~~~~~~L~~L~L~~~~~~~~i-------~~~~~~L~~L~l~~c~~l----~~----l~~~~p~L  353 (495)
                      ++...+...    .......+.++.|++++|......       ....+.++.+.+..++--    ..    +......|
T Consensus       235 ~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L  314 (460)
T d1z7xw1         235 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL  314 (460)
T ss_dssp             SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC
T ss_pred             hccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccc
Confidence            776554322    233345677888888876432211       112456666666554310    11    11123456


Q ss_pred             ceeeecccccc--------eEeecCCCCceEEEEEecccchhhhcchHHHh-ccCCccceEEEEEEeccee---cccccc
Q 011021          354 LLFTYEFNPIP--------IISINVPCPWKVSFVCKGVLNTHWYLKLKKFL-GVSKQIESLKLSLYSTKVL---YNLDEL  421 (495)
Q Consensus       354 ~~l~~~~~~~~--------~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l-~~l~~L~~L~l~~~~~~~~---~~p~~~  421 (495)
                      +.+.+.++.+.        ......++|++|+++.+....+. ...+...+ .+.+.|+.|+++.+.....   ...+.+
T Consensus       315 ~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g-~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l  393 (460)
T d1z7xw1         315 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG-VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL  393 (460)
T ss_dssp             CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH-HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred             ccccccccchhhhhhhhcccccccccchhhhheeeecccCcc-cchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHH
Confidence            66666655421        11223457888888654432221 23333334 3566788666643322211   112334


Q ss_pred             cccCCCCCCccceeEEEecCCCcc-HHHHHHHHhh-hccCCeeEEeeccccc
Q 011021          422 SECSPSLPLQVENLELHTNVPLSD-YETLLDCVFW-ICHPRTLRVNVMFEED  471 (495)
Q Consensus       422 ~~~~~~~p~~L~~L~l~~~~~~~~-~~~l~~~l~~-~~~l~~l~i~~~~~~~  471 (495)
                      ...     ++|++|+|++|+-... ...+...+.. .+.|++|.+..+.+++
T Consensus       394 ~~~-----~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         394 LAN-----HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             HHC-----CCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             hcC-----CCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            444     7788888887763322 3344445443 3368888887775543

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=6.3e-09  Score=80.08  Aligned_cols=40  Identities=25%  Similarity=0.400  Sum_probs=37.5

Q ss_pred             ccCCCcCCCCChHHHHHHhcCCChhHHHhhhcccccchhh
Q 011021           14 VVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL   53 (495)
Q Consensus        14 ~~~~d~is~LPd~vL~~Ils~L~~~d~~rts~lSkrWr~l   53 (495)
                      .-..|.|+.||+||+.+||+||+.+|+++++.|||+|+.+
T Consensus        13 ~~~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l   52 (102)
T d2ovrb1          13 QFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (102)
T ss_dssp             CCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             hhccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            4468999999999999999999999999999999999975

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.64  E-value=4.6e-09  Score=83.98  Aligned_cols=119  Identities=17%  Similarity=0.107  Sum_probs=68.6

Q ss_pred             eEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEecccccc
Q 011021          172 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEE  251 (495)
Q Consensus       172 ~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c~~~  251 (495)
                      +.|+|+++.++..+...++++|++|++++|.++.  ++..+..+++|+.|++++|..-.-..+.++++|+.|++.++.  
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~--   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNR--   76 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC--
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCc--chhhhhhhhcccccccccccccccCccccccccCeEECCCCc--
Confidence            4677777777655566677788888888777732  222356677777777777653221123344555555554442  


Q ss_pred             ceEEEEeCCcceEEEEeecCCCC-ceeEEeecCCCccEEEeeccccChH--HHHHHhhcCCCCcEE
Q 011021          252 IEIVEISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDLVSVYFADN--EFNHLISKFPSLEDL  314 (495)
Q Consensus       252 l~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~~L~~L  314 (495)
                                          ... +....++.+++|+.|+++++.+++.  ....+...+|+|+.|
T Consensus        77 --------------------i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          77 --------------------LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             --------------------CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             --------------------cCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence                                110 1112345677888888887776531  123344557777765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.62  E-value=4.4e-08  Score=91.29  Aligned_cols=77  Identities=16%  Similarity=0.141  Sum_probs=42.9

Q ss_pred             CceEeEEEeecCCCcccccCcc-cccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCcc
Q 011021          143 GVRELDFENITDENTVYTLPQA-IFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  219 (495)
Q Consensus       143 ~l~~L~l~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  219 (495)
                      +++.|+  +..+  .-..+|.. +..+++|++|++++|.+....  .+.++++|++|+++++.++.  +.  ...++.|+
T Consensus        32 ~l~~L~--Ls~N--~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~--l~--~~~~~~l~  103 (305)
T d1xkua_          32 DTALLD--LQNN--KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LP--EKMPKTLQ  103 (305)
T ss_dssp             TCCEEE--CCSS--CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CC--SSCCTTCC
T ss_pred             CCCEEE--CcCC--cCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc--Cc--cchhhhhh
Confidence            566666  4322  33455543 445677777777777654432  45567777777777776521  11  12345566


Q ss_pred             EEEEEecC
Q 011021          220 DLCFSNCW  227 (495)
Q Consensus       220 ~L~L~~c~  227 (495)
                      +|.+.++.
T Consensus       104 ~L~~~~n~  111 (305)
T d1xkua_         104 ELRVHENE  111 (305)
T ss_dssp             EEECCSSC
T ss_pred             hhhccccc
Confidence            66665553

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.60  E-value=3.1e-09  Score=81.36  Aligned_cols=39  Identities=26%  Similarity=0.497  Sum_probs=36.2

Q ss_pred             CCCcCCCCChHHHHHHhcCCChhHHHhhhcccccchhhh
Q 011021           16 AMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLY   54 (495)
Q Consensus        16 ~~d~is~LPd~vL~~Ils~L~~~d~~rts~lSkrWr~lw   54 (495)
                      ..|.|+.||+||+.+||+||+.+|+++++.|||+|+++.
T Consensus         2 k~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~   40 (100)
T d1nexb1           2 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKII   40 (100)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHH
T ss_pred             CCCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999999999999999998754

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.54  E-value=1.2e-09  Score=95.27  Aligned_cols=75  Identities=16%  Similarity=0.126  Sum_probs=50.5

Q ss_pred             eecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecC
Q 011021          151 NITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCW  227 (495)
Q Consensus       151 l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~  227 (495)
                      +.........+|..+..+++|++|+|++|.+.......++++|++|+|++|.++.  ++.+...++.|++|++.+|.
T Consensus        30 l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~N~  104 (198)
T d1m9la_          30 LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQ  104 (198)
T ss_dssp             CCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSEEE
T ss_pred             eecccCchhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhccccccc--cccccccccccccccccccc
Confidence            4433333455666677788888999988887655456778888888888888732  22233445667777777764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=4.1e-09  Score=88.62  Aligned_cols=126  Identities=13%  Similarity=0.003  Sum_probs=69.2

Q ss_pred             ccCCcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceee---cCCCCcc
Q 011021          166 FSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCV---SKASKLK  241 (495)
Q Consensus       166 ~~~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i---~~l~~L~  241 (495)
                      .++.+|++|+|++|.+...+ ....+++|+.|+|++|.+..  ++. +..+|+|++|++++|.. ..+..   ..+++|+
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~--l~~-~~~l~~L~~L~ls~N~i-~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK--LDG-FPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLT   90 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE--ECC-CCCCSSCCEEECCSSCC-CEECSCHHHHCTTCC
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCc--cCC-cccCcchhhhhcccccc-cCCCccccccccccc
Confidence            34567888888888776544 33567777777777776632  111 34566666666666642 22111   1234444


Q ss_pred             EEEeccccccceEEEEeCCcceEEEEeecCCCC-ceeEEeecCCCccEEEeeccccChHH--HHHHhhcCCCCcEEEec
Q 011021          242 IMEIRSFSEEIEIVEISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDLVSVYFADNE--FNHLISKFPSLEDLFVT  317 (495)
Q Consensus       242 ~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~~L~~L~L~  317 (495)
                      .|++.+|.                      ... +....+..+++|++|++++|.++...  -...+..+|+|+.|+-.
T Consensus        91 ~L~L~~N~----------------------i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          91 ELILTNNS----------------------LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             EEECCSCC----------------------CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             cceecccc----------------------ccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence            44444432                      211 01122446788888888877765421  12345567888877643

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=8.9e-09  Score=101.46  Aligned_cols=336  Identities=14%  Similarity=0.092  Sum_probs=179.9

Q ss_pred             CceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCC------CccCCCCCcEEEeeeEeeChHHHHHHHhc--
Q 011021          143 GVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVCLDEQMVQKLASE--  214 (495)
Q Consensus       143 ~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~------~~~~l~~L~~L~L~~~~~~~~~l~~l~~~--  214 (495)
                      +++.|+  +.........+...+..++++++|+|.+|.+....      ....+++|+.|+|+++.+++.++..+...  
T Consensus         3 ~l~~ld--~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLD--IQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEE--EESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCEEE--eeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            466777  54444444444444455688888888888765422      23567888888888888876666665443  


Q ss_pred             --CCCccEEEEEecCCCcce-------eecCCCCccEEEecccc-c--c--------------ceEEEE-----------
Q 011021          215 --CPLLEDLCFSNCWGLKHL-------CVSKASKLKIMEIRSFS-E--E--------------IEIVEI-----------  257 (495)
Q Consensus       215 --~p~Le~L~L~~c~~l~~~-------~i~~l~~L~~L~i~~c~-~--~--------------l~~~~~-----------  257 (495)
                        .+.|++|++++|. ++..       .+..+++|++|++.++. .  +              ......           
T Consensus        81 ~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  159 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  159 (460)
T ss_dssp             STTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             cCCCCCCEEECCCCC-ccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhc
Confidence              3578888888885 3321       23356788888887664 0  0              000110           


Q ss_pred             -------eCCcceEEEEeecCCCCc-eeE---Ee-ecCCCccEEEeeccccChHH---HHHHhhcCCCCcEEEecCCCCC
Q 011021          258 -------SVPSLQQLTLLFYGARRP-RVV---EV-ARSPHLKKLDLVSVYFADNE---FNHLISKFPSLEDLFVTRCCLP  322 (495)
Q Consensus       258 -------~~p~L~~L~l~~~~~~~~-~~~---~~-~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~~L~~L~L~~~~~~  322 (495)
                             ..+.++.+.++.+..... ...   .+ ..-.....+.+.++......   ........+.++.+.+..+...
T Consensus       160 ~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~  239 (460)
T d1z7xw1         160 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  239 (460)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccc
Confidence                   113555555552211000 000   00 11224455666655544322   2333456778888888776322


Q ss_pred             c--------cccccccccceEEeccCCCccE----E---eccCCccceeeecccccc---------eEeecCCCCceEEE
Q 011021          323 G--------KIKISSNQLKNLLFRSCKYLKV----I---DVDAPNLLLFTYEFNPIP---------IISINVPCPWKVSF  378 (495)
Q Consensus       323 ~--------~i~~~~~~L~~L~l~~c~~l~~----l---~~~~p~L~~l~~~~~~~~---------~~~~~~~~L~~l~i  378 (495)
                      .        ........++.+.+.+|..-..    +   ....+.++.+++.++.+.         ......+.|+.+.+
T Consensus       240 ~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l  319 (460)
T d1z7xw1         240 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV  319 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             ccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccc
Confidence            1        1112345777787777653211    0   012556666676665531         01112356788877


Q ss_pred             EEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCCCc-cHHHHHHHHhhhc
Q 011021          379 VCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLS-DYETLLDCVFWIC  457 (495)
Q Consensus       379 ~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~-~~~~l~~~l~~~~  457 (495)
                      +.+....+. ...+...+...++|++|+++....... ....+........+.|+.|++++|.-.. ....+...+..++
T Consensus       320 ~~~~l~~~~-~~~l~~~~~~~~~L~~L~Ls~N~i~~~-g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~  397 (460)
T d1z7xw1         320 KSCSFTAAC-CSHFSSVLAQNRFLLELQISNNRLEDA-GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH  397 (460)
T ss_dssp             TTSCCBGGG-HHHHHHHHHHCSSCCEEECCSSBCHHH-HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred             cccchhhhh-hhhcccccccccchhhhheeeecccCc-ccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCC
Confidence            544332221 344556677778888776643222110 0111211100112568888888876322 2445556666677


Q ss_pred             cCCeeEEeeccccchhHHHHHHHhhC
Q 011021          458 HPRTLRVNVMFEEDHKFITVCYVLFD  483 (495)
Q Consensus       458 ~l~~l~i~~~~~~~~~~~~~~~~~~~  483 (495)
                      +|++|.|....+..++..+....+..
T Consensus       398 ~L~~L~Ls~N~i~~~g~~~l~~~l~~  423 (460)
T d1z7xw1         398 SLRELDLSNNCLGDAGILQLVESVRQ  423 (460)
T ss_dssp             CCCEEECCSSSCCHHHHHHHHHHHTS
T ss_pred             CCCEEECCCCcCCHHHHHHHHHHHHh
Confidence            88888887776667666665544443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1.3e-07  Score=84.70  Aligned_cols=88  Identities=16%  Similarity=0.184  Sum_probs=45.5

Q ss_pred             cccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee---
Q 011021          159 YTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---  233 (495)
Q Consensus       159 ~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~---  233 (495)
                      ..+|..+.  +++++|+++++.+...+  .+.++++|++|+++++.+....-...+.+++.+++|.+..+..+....   
T Consensus        21 ~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~   98 (242)
T d1xwdc1          21 TEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA   98 (242)
T ss_dssp             SSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTS
T ss_pred             CCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccc
Confidence            35555443  46777777777665432  345667777777766654211001113456666666666554443322   


Q ss_pred             ecCCCCccEEEeccc
Q 011021          234 VSKASKLKIMEIRSF  248 (495)
Q Consensus       234 i~~l~~L~~L~i~~c  248 (495)
                      +.++++|+.+.+.++
T Consensus        99 ~~~l~~L~~l~l~~~  113 (242)
T d1xwdc1          99 FQNLPNLQYLLISNT  113 (242)
T ss_dssp             EECCTTCCEEEEESC
T ss_pred             ccccccccccccchh
Confidence            223455555555444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=3.1e-08  Score=91.40  Aligned_cols=172  Identities=14%  Similarity=0.047  Sum_probs=99.7

Q ss_pred             cCceEeEEEeecCCCcccccCcc-cccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCc
Q 011021          142 NGVRELDFENITDENTVYTLPQA-IFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  218 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L  218 (495)
                      .++++|+  +..+  .-..+|.. +..+++|++|+++++.+....  ....++.++.+...........-...+.++++|
T Consensus        32 ~~~~~L~--Ls~N--~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L  107 (284)
T d1ozna_          32 AASQRIF--LHGN--RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL  107 (284)
T ss_dssp             TTCSEEE--CTTS--CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred             CCCCEEE--CcCC--cCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccC
Confidence            3677777  5432  23456654 556889999999998765433  455678888887654332101112236788999


Q ss_pred             cEEEEEecCCCc--ceeecCCCCccEEEeccccccceEEE---E-eCCcceEEEEeecCCCCceeEEeecCCCccEEEee
Q 011021          219 EDLCFSNCWGLK--HLCVSKASKLKIMEIRSFSEEIEIVE---I-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLV  292 (495)
Q Consensus       219 e~L~L~~c~~l~--~~~i~~l~~L~~L~i~~c~~~l~~~~---~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  292 (495)
                      ++|++.+|....  .......++|+.+.+.++.  +..+.   + ..++|+.|+++++....-.+..+.++++|+.+++.
T Consensus       108 ~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~--l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~  185 (284)
T d1ozna_         108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA--LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH  185 (284)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEecCCcccccccccccchhcccchhhhcccc--ccccChhHhccccchhhcccccCcccccchhhhccccccchhhhh
Confidence            999999886422  2223345778888887764  22221   1 34567777766433321112233456667777777


Q ss_pred             ccccChHHHHHHhhcCCCCcEEEecCCC
Q 011021          293 SVYFADNEFNHLISKFPSLEDLFVTRCC  320 (495)
Q Consensus       293 ~~~~~~~~~~~l~~~~~~L~~L~L~~~~  320 (495)
                      ++.+++-. ...+.++++|+.|+++++.
T Consensus       186 ~N~l~~i~-~~~f~~l~~L~~L~l~~N~  212 (284)
T d1ozna_         186 QNRVAHVH-PHAFRDLGRLMTLYLFANN  212 (284)
T ss_dssp             SSCCCEEC-TTTTTTCTTCCEEECCSSC
T ss_pred             hccccccC-hhHhhhhhhcccccccccc
Confidence            66655421 2224556677777776653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.30  E-value=5e-07  Score=85.26  Aligned_cols=74  Identities=16%  Similarity=0.111  Sum_probs=46.7

Q ss_pred             cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCC-CCCcEEEeeeEeeChHHHHHHHhcCCCccE
Q 011021          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIML-CSLKKLTLERVCLDEQMVQKLASECPLLED  220 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l-~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  220 (495)
                      .++++|+  +..+  .-..+|..   ..+|+.|++.++.+....   .+ +.|++|+++++.+..  ++. ...++.|+.
T Consensus        58 ~~L~~L~--Ls~N--~l~~lp~~---~~~L~~L~l~~n~l~~l~---~lp~~L~~L~L~~n~l~~--lp~-~~~l~~L~~  124 (353)
T d1jl5a_          58 PHLESLV--ASCN--SLTELPEL---PQSLKSLLVDNNNLKALS---DLPPLLEYLGVSNNQLEK--LPE-LQNSSFLKI  124 (353)
T ss_dssp             TTCSEEE--CCSS--CCSSCCCC---CTTCCEEECCSSCCSCCC---SCCTTCCEEECCSSCCSS--CCC-CTTCTTCCE
T ss_pred             CCCCEEE--CCCC--CCcccccc---hhhhhhhhhhhcccchhh---hhcccccccccccccccc--ccc-hhhhcccee
Confidence            4678887  5432  23356654   357888888887765422   22 468888888887732  121 356788888


Q ss_pred             EEEEecCC
Q 011021          221 LCFSNCWG  228 (495)
Q Consensus       221 L~L~~c~~  228 (495)
                      |++.++..
T Consensus       125 L~l~~~~~  132 (353)
T d1jl5a_         125 IDVDNNSL  132 (353)
T ss_dssp             EECCSSCC
T ss_pred             eccccccc
Confidence            88877653

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=8.4e-08  Score=75.63  Aligned_cols=38  Identities=32%  Similarity=0.649  Sum_probs=35.3

Q ss_pred             CCCcCCCCC----hHHHHHHhcCCChhHHHhhhcccccchhh
Q 011021           16 AMDRISELP----TFIIHHLMSYLSAKEVARTSVLSKKWNQL   53 (495)
Q Consensus        16 ~~d~is~LP----d~vL~~Ils~L~~~d~~rts~lSkrWr~l   53 (495)
                      ..|.|+.||    |||+.+|||||+.+|+++++.|||+|+++
T Consensus         7 ~~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             cccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            578999999    59999999999999999999999999865

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.19  E-value=2.9e-07  Score=87.14  Aligned_cols=160  Identities=11%  Similarity=0.086  Sum_probs=88.9

Q ss_pred             ccCcccccCCcceEEEEeccccCCCC------CccCCCCCcEEEeeeEeeC------hH---HHHHHHhcCCCccEEEEE
Q 011021          160 TLPQAIFSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVCLD------EQ---MVQKLASECPLLEDLCFS  224 (495)
Q Consensus       160 ~lp~~l~~~~~L~~L~L~~c~l~~~~------~~~~l~~L~~L~L~~~~~~------~~---~l~~l~~~~p~Le~L~L~  224 (495)
                      .+...+....+|+.|+|++|.+....      .....++|+.|+++++...      ..   .+...+..|+.|++|+++
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            44445555788999999988764322      3456788999999877541      12   233345678999999998


Q ss_pred             ecCCCcc----e--eecCCCCccEEEeccccc---c-------ceEE-----EEeCCcceEEEEeecCCCCc----eeEE
Q 011021          225 NCWGLKH----L--CVSKASKLKIMEIRSFSE---E-------IEIV-----EISVPSLQQLTLLFYGARRP----RVVE  279 (495)
Q Consensus       225 ~c~~l~~----~--~i~~l~~L~~L~i~~c~~---~-------l~~~-----~~~~p~L~~L~l~~~~~~~~----~~~~  279 (495)
                      +|..-..    +  .+..+++|++|.+.+|.-   +       +...     ....+.|+.+.++.+.....    ....
T Consensus       102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~  181 (344)
T d2ca6a1         102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  181 (344)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             ccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccch
Confidence            8853221    1  122457888888887740   0       0000     01234566666552221110    1111


Q ss_pred             eecCCCccEEEeeccccChHHHH----HHhhcCCCCcEEEecCC
Q 011021          280 VARSPHLKKLDLVSVYFADNEFN----HLISKFPSLEDLFVTRC  319 (495)
Q Consensus       280 ~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~~L~~L~L~~~  319 (495)
                      +..++.|+.|+++++.+++....    ..+..+++|+.|++++|
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N  225 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN  225 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS
T ss_pred             hhhhhhhcccccccccccccccccchhhhhcchhhhcccccccc
Confidence            23455666666666666553322    22345566666666655

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.8e-07  Score=78.16  Aligned_cols=102  Identities=15%  Similarity=0.045  Sum_probs=73.0

Q ss_pred             CceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEE
Q 011021          143 GVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLC  222 (495)
Q Consensus       143 ~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~  222 (495)
                      ++++|+  +..+  .-..++.....+++|++|+|++|.+....++..+++|++|++++|.++.- ...++.++|.|++|+
T Consensus        19 ~lr~L~--L~~n--~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l-~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          19 RDRELD--LRGY--KIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELI   93 (162)
T ss_dssp             SCEEEE--CTTS--CCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEEE
T ss_pred             cCcEEE--CCCC--CCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCC-Cccccccccccccce
Confidence            567777  5433  23445554456799999999999887655678899999999999988321 112356799999999


Q ss_pred             EEecCCCc--c-eeecCCCCccEEEecccc
Q 011021          223 FSNCWGLK--H-LCVSKASKLKIMEIRSFS  249 (495)
Q Consensus       223 L~~c~~l~--~-~~i~~l~~L~~L~i~~c~  249 (495)
                      +.+|..-.  . ..+.++++|+.|++.+|.
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             eccccccccccccccccccccchhhcCCCc
Confidence            99997432  2 134467788888887775

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.7e-06  Score=77.16  Aligned_cols=186  Identities=15%  Similarity=0.025  Sum_probs=101.5

Q ss_pred             cCceEeEEEeecCCCcccccCccc-ccCCcceEEEEeccccCCC---CCccCCCCCcEEEeeeEe-eChHHHHHHHhcCC
Q 011021          142 NGVRELDFENITDENTVYTLPQAI-FSANSVTNLRLVWCRLEQP---FDSIMLCSLKKLTLERVC-LDEQMVQKLASECP  216 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l-~~~~~L~~L~L~~c~l~~~---~~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~~p  216 (495)
                      +++++|+  +...  .-..+|... ..+++|++|++++|.+...   ..+.+++.++++.+..+. ... .....+.+++
T Consensus        29 ~~l~~L~--Ls~n--~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~-~~~~~~~~l~  103 (242)
T d1xwdc1          29 RNAIELR--FVLT--KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLP  103 (242)
T ss_dssp             SCCSEEE--EESC--CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCE-ECTTSEECCT
T ss_pred             CCCCEEE--CcCC--cCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccc-cccccccccc
Confidence            4788888  5432  234566654 4589999999999876432   145678999999887642 211 1112357899


Q ss_pred             CccEEEEEecCCCcceeecCCCCccEEEecccc-ccceEEEEe-----CCcceEEEEeecCCCCceeEEeecCCCccEEE
Q 011021          217 LLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEIS-----VPSLQQLTLLFYGARRPRVVEVARSPHLKKLD  290 (495)
Q Consensus       217 ~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c~-~~l~~~~~~-----~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  290 (495)
                      .|++|.+.++..........+.+++.+...... ..+..+...     ...++.+.+..+... .........++++++.
T Consensus       104 ~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~-~i~~~~~~~~~l~~~~  182 (242)
T d1xwdc1         104 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNCAFNGTQLDELN  182 (242)
T ss_dssp             TCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTTTTTCCEEEEE
T ss_pred             cccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc-ccccccccchhhhccc
Confidence            999999999864332233334455555443222 123333211     235666666532221 1111112344555554


Q ss_pred             -eeccccChHHHHHHhhcCCCCcEEEecCCCCCccccc-cccccceE
Q 011021          291 -LVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI-SSNQLKNL  335 (495)
Q Consensus       291 -l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~~-~~~~L~~L  335 (495)
                       +.++.++. .....+.++++|+.|+++++. ++.++. .+.++..|
T Consensus       183 ~l~~n~l~~-l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L  227 (242)
T d1xwdc1         183 LSDNNNLEE-LPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKL  227 (242)
T ss_dssp             CTTCTTCCC-CCTTTTTTSCCCSEEECTTSC-CCCCCSSSCTTCCEE
T ss_pred             ccccccccc-ccHHHhcCCCCCCEEECCCCc-CCccCHHHHcCCccc
Confidence             34444443 112234567888888888764 334432 24444444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.05  E-value=7e-07  Score=84.47  Aligned_cols=81  Identities=26%  Similarity=0.387  Sum_probs=41.1

Q ss_pred             ecCCCccEEEeeccccChHHH---HHHhhcCCCCcEEEecCCCCCc----ccc-----ccccccceEEeccCCCcc----
Q 011021          281 ARSPHLKKLDLVSVYFADNEF---NHLISKFPSLEDLFVTRCCLPG----KIK-----ISSNQLKNLLFRSCKYLK----  344 (495)
Q Consensus       281 ~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~~L~~L~L~~~~~~~----~i~-----~~~~~L~~L~l~~c~~l~----  344 (495)
                      ..+++|+.|+++++.+++...   ...+..+++|+.|.+++|.--.    .+.     ...+.|+.|+++++. +.    
T Consensus       212 ~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~  290 (344)
T d2ca6a1         212 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAV  290 (344)
T ss_dssp             GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHH
T ss_pred             cchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCc-CChHHH
Confidence            345666666666666554332   2234456666666666663111    111     012456666666553 21    


Q ss_pred             -----EEeccCCccceeeecccc
Q 011021          345 -----VIDVDAPNLLLFTYEFNP  362 (495)
Q Consensus       345 -----~l~~~~p~L~~l~~~~~~  362 (495)
                           .+.-..++|+.++++|+.
T Consensus       291 ~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         291 RTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHHHHHHHccCCCCCEEECCCCc
Confidence                 111135667777777665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.93  E-value=2.5e-06  Score=73.21  Aligned_cols=116  Identities=21%  Similarity=0.107  Sum_probs=70.0

Q ss_pred             CcccccCcccccCCcceEEEEeccccCC-CC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce
Q 011021          156 NTVYTLPQAIFSANSVTNLRLVWCRLEQ-PF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL  232 (495)
Q Consensus       156 ~~~~~lp~~l~~~~~L~~L~L~~c~l~~-~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~  232 (495)
                      ..-..+|..+.  +++++|+|++|.+.. ..  .+.++++|+.|+|+++.+..- ....+...+.|++|++++|.. ..+
T Consensus        18 ~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~L~~L~Ls~N~l-~~l   93 (192)
T d1w8aa_          18 RGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKI-KEI   93 (192)
T ss_dssp             SCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCC-CEE
T ss_pred             CCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccc-cccccccccccceeeeccccc-ccc
Confidence            34456676653  678899999988753 22  556788888888888877321 122355678888888887753 222


Q ss_pred             ---eecCCCCccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccC
Q 011021          233 ---CVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA  297 (495)
Q Consensus       233 ---~i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  297 (495)
                         .+.++++|+.|+++++.  +..+.                    +..+..+++|++|+++++.+.
T Consensus        94 ~~~~F~~l~~L~~L~L~~N~--l~~i~--------------------~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          94 SNKMFLGLHQLKTLNLYDNQ--ISCVM--------------------PGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CSSSSTTCTTCCEEECCSSC--CCEEC--------------------TTSSTTCTTCCEEECTTCCBC
T ss_pred             CHHHHhCCCcccccccCCcc--ccccC--------------------HHHhcCCcccccccccccccc
Confidence               23345666666666552  11111                    112345677777777776654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.90  E-value=1.9e-06  Score=68.28  Aligned_cols=99  Identities=17%  Similarity=0.138  Sum_probs=62.0

Q ss_pred             cEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce--eecCCCCccEEEeccccccceEEEEeCCcceEEEEeecC
Q 011021          194 KKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYG  271 (495)
Q Consensus       194 ~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~--~i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~  271 (495)
                      |.|+|+++.++.  +.. +.+++.|++|++++|.. +.+  .+..+++|+.|+++++.                      
T Consensus         1 R~L~Ls~n~l~~--l~~-l~~l~~L~~L~ls~N~l-~~lp~~~~~l~~L~~L~l~~N~----------------------   54 (124)
T d1dcea3           1 RVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNA----------------------   54 (124)
T ss_dssp             SEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSC----------------------
T ss_pred             CEEEcCCCCCCC--Ccc-cccCCCCCEEECCCCcc-Ccchhhhhhhhccccccccccc----------------------
Confidence            567777777732  222 46777888888877753 222  23345555555555442                      


Q ss_pred             CCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCC
Q 011021          272 ARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC  320 (495)
Q Consensus       272 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  320 (495)
                      ... . ..++.+++|++|+++++.+++......+..+++|+.|++++++
T Consensus        55 i~~-l-~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          55 LEN-V-DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             CCC-C-GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             ccc-c-CccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCc
Confidence            211 1 1255789999999999988752212335678999999999874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.87  E-value=3.5e-07  Score=79.18  Aligned_cols=108  Identities=15%  Similarity=0.135  Sum_probs=62.3

Q ss_pred             CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEeccccccceEEEEeCCcceEE
Q 011021          186 DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQL  265 (495)
Q Consensus       186 ~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L  265 (495)
                      ....+++|++|+|+++.+++  ++. +.++++|++|++++|.. +.+.-                    +....++|+.|
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~--i~~-l~~l~~L~~L~Ls~N~i-~~i~~--------------------~~~~~~~L~~L   98 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEK--ISS-LSGMENLRILSLGRNLI-KKIEN--------------------LDAVADTLEEL   98 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESC--CCC-HHHHTTCCEEECCEEEE-CSCSS--------------------HHHHHHHCCEE
T ss_pred             HHhcccccceeECcccCCCC--ccc-ccCCccccChhhccccc-ccccc--------------------ccccccccccc
Confidence            45678889999998888842  222 45678888888888742 11110                    00012334444


Q ss_pred             EEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCC
Q 011021          266 TLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (495)
Q Consensus       266 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~  319 (495)
                      +++++.... . ..+..+++|+.|++++|.+++-.....+..+++|+.|++.+|
T Consensus        99 ~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_          99 WISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             ECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred             ccccccccc-c-ccccccccccccccccchhccccccccccCCCccceeecCCC
Confidence            444332211 1 123456777788887777765322233566778888888776

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.52  E-value=2.5e-05  Score=66.68  Aligned_cols=104  Identities=13%  Similarity=-0.019  Sum_probs=70.4

Q ss_pred             cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCcc
Q 011021          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  219 (495)
Q Consensus       142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  219 (495)
                      .++++|+  +.........-+..+...++|++|+|+++.+....  .+..+++|++|+|+++.+..- ....+.+.+.|+
T Consensus        29 ~~l~~L~--Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l-~~~~F~~l~~L~  105 (192)
T d1w8aa_          29 LHTTELL--LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI-SNKMFLGLHQLK  105 (192)
T ss_dssp             TTCSEEE--CCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEE-CSSSSTTCTTCC
T ss_pred             CCCCEEE--eCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccccccc-CHHHHhCCCccc
Confidence            3677877  54332222222333445899999999999876543  667899999999999988321 112367899999


Q ss_pred             EEEEEecCCCccee---ecCCCCccEEEecccc
Q 011021          220 DLCFSNCWGLKHLC---VSKASKLKIMEIRSFS  249 (495)
Q Consensus       220 ~L~L~~c~~l~~~~---i~~l~~L~~L~i~~c~  249 (495)
                      +|+|++|.. ..+.   +.++++|++|++.++.
T Consensus       106 ~L~L~~N~l-~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_         106 TLNLYDNQI-SCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             EEECCSSCC-CEECTTSSTTCTTCCEEECTTCC
T ss_pred             ccccCCccc-cccCHHHhcCCcccccccccccc
Confidence            999999863 3332   3356777777776654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00039  Score=56.74  Aligned_cols=69  Identities=20%  Similarity=0.073  Sum_probs=43.4

Q ss_pred             ccccCcccccCCcceEEEEeccc-cCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecC
Q 011021          158 VYTLPQAIFSANSVTNLRLVWCR-LEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCW  227 (495)
Q Consensus       158 ~~~lp~~l~~~~~L~~L~L~~c~-l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~  227 (495)
                      ....|..+...++|++|++.++. +....  .+.++++|+.|+|+++.+..-. ...+.+.++|++|+|++|.
T Consensus        20 ~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSC
T ss_pred             CccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcc-cccccccccccceeccCCC
Confidence            34556666667788888887653 44322  4567788888888877762110 1235567777777777775

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00033  Score=57.21  Aligned_cols=79  Identities=13%  Similarity=0.051  Sum_probs=45.2

Q ss_pred             CCcceEEEEeccccCCCC-CccCCCCCcEEEeeeEe-eChHHHHHHHhcCCCccEEEEEecCCCccee---ecCCCCccE
Q 011021          168 ANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVC-LDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASKLKI  242 (495)
Q Consensus       168 ~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~---i~~l~~L~~  242 (495)
                      |.....++.++..+...+ ...++++|++|++.++. ++.-. ...+.++++|+.|++++|. +..+.   +.++++|+.
T Consensus         7 c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCE
T ss_pred             cCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccC-chhhccccccCcceeeccc-cCCcccccccccccccc
Confidence            444556666665554433 55677888888886553 32100 1124567788888887775 23322   234566666


Q ss_pred             EEeccc
Q 011021          243 MEIRSF  248 (495)
Q Consensus       243 L~i~~c  248 (495)
                      |+++++
T Consensus        85 L~Ls~N   90 (156)
T d2ifga3          85 LNLSFN   90 (156)
T ss_dssp             EECCSS
T ss_pred             eeccCC
Confidence            666555

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.40  E-value=0.00049  Score=56.89  Aligned_cols=19  Identities=16%  Similarity=0.324  Sum_probs=8.8

Q ss_pred             HHHHHhcCCCccEEEEEec
Q 011021          208 VQKLASECPLLEDLCFSNC  226 (495)
Q Consensus       208 l~~l~~~~p~Le~L~L~~c  226 (495)
                      ++.+..+.|.|++|+|+++
T Consensus         7 l~~l~~n~~~L~~L~L~~~   25 (167)
T d1pgva_           7 INRLREDDTDLKEVNINNM   25 (167)
T ss_dssp             HHHHHTTCSSCCEEECTTC
T ss_pred             HHHHHhCCCCCcEEEeCCC
Confidence            3444444445555555443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.00023  Score=58.66  Aligned_cols=87  Identities=23%  Similarity=0.255  Sum_probs=45.0

Q ss_pred             HHHHHHhcCCCccEEEEEecCCCccee----ecCCCCccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeec
Q 011021          207 MVQKLASECPLLEDLCFSNCWGLKHLC----VSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVAR  282 (495)
Q Consensus       207 ~l~~l~~~~p~Le~L~L~~c~~l~~~~----i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~  282 (495)
                      .+..+...+|.|++|++++|....--.    +..+++|+.|+++++.                      ...-......+
T Consensus        56 ~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~----------------------i~~l~~l~~l~  113 (162)
T d1koha1          56 TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE----------------------LKSERELDKIK  113 (162)
T ss_dssp             HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSC----------------------CCCGGGHHHHT
T ss_pred             hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCc----------------------cccchhhhhhh
Confidence            345556678999999998886321111    1124444444444442                      11100111112


Q ss_pred             CCCccEEEeeccccCh------HHHHHHhhcCCCCcEEE
Q 011021          283 SPHLKKLDLVSVYFAD------NEFNHLISKFPSLEDLF  315 (495)
Q Consensus       283 ~~~L~~L~l~~~~~~~------~~~~~l~~~~~~L~~L~  315 (495)
                      ..+|+.|++.++.+..      .....+...||+|+.|+
T Consensus       114 ~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         114 GLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             TCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             ccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            3457777777776542      22334556777777764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.00052  Score=56.37  Aligned_cols=61  Identities=23%  Similarity=0.066  Sum_probs=40.9

Q ss_pred             cCCcceEEEEeccccCCCC----CccCCCCCcEEEeeeEee-ChHHHHHHHhcCCCccEEEEEecCCC
Q 011021          167 SANSVTNLRLVWCRLEQPF----DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGL  229 (495)
Q Consensus       167 ~~~~L~~L~L~~c~l~~~~----~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~l  229 (495)
                      .+++|++|+|++|.++...    ....+++|+.|+|++|.+ +-..+.. + ..+.|++|.+.+|+..
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~-l-~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-I-KGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHH-H-TTCCCSSCCCTTSTTS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhh-h-hccccceeecCCCCcC
Confidence            3677888888888776532    234678888888888887 3333432 2 3456888888887653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.44  E-value=0.0017  Score=53.35  Aligned_cols=108  Identities=12%  Similarity=0.108  Sum_probs=56.4

Q ss_pred             CCCCCcEEEeeeE-eeChHHHHHHH---hcCCCccEEEEEecCCCccee-------ecCCCCccEEEeccccccceEEEE
Q 011021          189 MLCSLKKLTLERV-CLDEQMVQKLA---SECPLLEDLCFSNCWGLKHLC-------VSKASKLKIMEIRSFSEEIEIVEI  257 (495)
Q Consensus       189 ~l~~L~~L~L~~~-~~~~~~l~~l~---~~~p~Le~L~L~~c~~l~~~~-------i~~l~~L~~L~i~~c~~~l~~~~~  257 (495)
                      +.|.|++|+|+++ .++++++..+.   ..++.|++|++++|.. +...       +...++++.+++.+|.        
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l-~~~~~~~L~~~l~~~~~l~~l~l~~~~--------   85 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRS-NDPVAFALAEMLKVNNTLKSLNVESNF--------   85 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCC-CHHHHHHHHHHHHHCSSCCEEECCSSC--------
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcc-cHHHHHHHHHHHhhcccchhhhhcccc--------
Confidence            4567777777764 35555544443   3566777777776642 2110       1122344444444332        


Q ss_pred             eCCcceEEEEeecCCCC----ceeEEeecCCCccEEEee--ccccChHH---HHHHhhcCCCCcEEEecCC
Q 011021          258 SVPSLQQLTLLFYGARR----PRVVEVARSPHLKKLDLV--SVYFADNE---FNHLISKFPSLEDLFVTRC  319 (495)
Q Consensus       258 ~~p~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~--~~~~~~~~---~~~l~~~~~~L~~L~L~~~  319 (495)
                                    ...    .....+...++|+.++|.  ++.+++..   +...+...++|++|++..+
T Consensus        86 --------------~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          86 --------------ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             --------------CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             --------------ccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence                          110    111223456777776554  45566543   3334457788888888654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.04  E-value=0.013  Score=47.86  Aligned_cols=60  Identities=13%  Similarity=0.114  Sum_probs=33.0

Q ss_pred             cCCcceEEEEeccccCCCC------CccCCCCCcEEEeeeEeeChHHHHHH---HhcCCCccEEEEEec
Q 011021          167 SANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVCLDEQMVQKL---ASECPLLEDLCFSNC  226 (495)
Q Consensus       167 ~~~~L~~L~L~~c~l~~~~------~~~~l~~L~~L~L~~~~~~~~~l~~l---~~~~p~Le~L~L~~c  226 (495)
                      ..++|++|+|++|.+....      .....+.|++|+|++|.+++.+...+   +..++.|++|++.++
T Consensus        42 ~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          42 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            3455666666666554321      12235666666666666655444433   445566677766655

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.30  E-value=0.0036  Score=51.27  Aligned_cols=82  Identities=10%  Similarity=0.062  Sum_probs=47.9

Q ss_pred             cCCcceEEEEecc-ccCCCC------CccCCCCCcEEEeeeEeeChHHHH---HHHhcCCCccEEEEEecCCCcc-----
Q 011021          167 SANSVTNLRLVWC-RLEQPF------DSIMLCSLKKLTLERVCLDEQMVQ---KLASECPLLEDLCFSNCWGLKH-----  231 (495)
Q Consensus       167 ~~~~L~~L~L~~c-~l~~~~------~~~~l~~L~~L~L~~~~~~~~~l~---~l~~~~p~Le~L~L~~c~~l~~-----  231 (495)
                      +.++|++|+|+++ .+....      .....++|++|+|+++.++++...   ..+...+.|+.+.+.+|..-..     
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            3467777777763 343322      234567788888888877555444   3456678888888887764221     


Q ss_pred             -eeecCCCCccEEEeccc
Q 011021          232 -LCVSKASKLKIMEIRSF  248 (495)
Q Consensus       232 -~~i~~l~~L~~L~i~~c  248 (495)
                       -.+...++|+.+.+..+
T Consensus        95 ~~~l~~~~~L~~l~L~l~  112 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQ  112 (166)
T ss_dssp             HHGGGGCSSCCEEECCCC
T ss_pred             HHHHHhCccccEEeeccC
Confidence             11223456666555433