Citrus Sinensis ID: 011033

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-----
Protein Sequence
MKEQTYIWKSHNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGGELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCPLMEEKCRKDGGLLTHIPSVQIDLNGFLTAEQRTTEIFYY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHHccccccccEEEEEcccccEEccccccccccccEEEEEccccccccccccccccccEEEEEcccccEEccccccccccccccEEEEEEcccccccccccccccccEEEEcccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccccEEEEEcccccEEccccccccccccEEEEEcccccEEEcccccccccccEEEEEcccccccccccccccccccEEEEccccccccccccccccccEEEccccccHHHcccccccccccccccEEEEEcccccccccccccccccccccccccccEEEEEcccccccccccccccccccEEEccccccccccccccccccccEEEcccccHHHcccccccccEEcccEEEEccccEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHcccHccccccccEEEccccccHcccccccccccccccccccccccEEEccccccHHcccccccccccccEEEccccccccccccccccccccEEEccccccHccccHHHccccccccEEEEccccccccccccccccccccEEEccccccHHcccHHHccccHHHHccccccccccccEEcccccccHccccHHcccccHHccccccccccccEEEEccccccHHcccccccccccccEEEccccccHccccccccccccccEEEccccccHccccccccccccccEEEEcccHHHHHccccccccccccEEEcccccccccccccccccHHcEHHHHHHHHHHHHHccccccccccccEEEEcccccHccccccHHccccHHccccccccEEEccccccHHHcccHccccccccEEEccccccHcccccccccccccEEEccccHHHHHcccccccccccccEEEEcccccccccccccEEEcc
Coil and Loop (DISEMBL)
MKEQTYIWKSHNELLQDICSLRrltitscpklqsLVAEEEKDQQQQLCELSCRLEYLRLSYCEGlvklpqsslslsslreieiykcsslvsfpevalpsklkIIEIEGcdalkslpeawmcdtnssletLYIEHCRTLTYLagvqlprslkrldilscdniRTLTVEEgiqsssssssnrrYTSSLlekleirdcpsltcifsqnelpatleslevgnlppslksLFVWYCPKLESIAErldnntsletinisgcenlkilpsglhnlgqlqeiEIWEcenlvsfpegglpcaklsklriYGCERLEALPKGLHNLTSlqqltiggelpsleedglptnlhslHIWGNMEIWKSMIERgrgfhrfssLRHLtiegcdddmvsfpledkrlgtalplpasltslrivdfpnlerlsssivdlqnlthlnlvdcpklkyfpekglpssllQLSIyrcplmeekcrkdggllthipsvqidlngfltaEQRTTEIFYY
Flexible Loop (DISEMBL)
MKEQTYIWKSHNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTveegiqsssssssnrrYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGGELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCPLMEEKCRKDGGLLTHipsvqidlngfltaeqrtteifyy
Low Complexity Region (SEG)
MKEQTYIWKSHNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQsslslsslREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQsssssssNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGGELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCPLMEEKCRKDGGLLTHIPSVQIDLNGFLTAEQRTTEIFYY
Disordered region (IsUnstruct)
****TYIWKSHNELLQDICSLRRLTITSCPKLQSLVA*******QQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTV*******************LLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGGELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCPLMEEKCRKDGGLLTHIPSVQIDLNGFLTAEQRTTEIFY*
Disordered Region (DISOPRED)
MKEQTYIWKSHNELLQDICSLRRLTITSCPKLQSLVAEE**********LSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEG*************TSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGGELPSLEEDGLPTNLHSLHIWGNMEIWKS*IE*GRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCPLMEEKCRKDGGLLTHIPSVQIDLNGFLTAEQRT**IFYY
Disordered Region (DISEMBL)
MKEQTYIWKSHNELLQDICSLRRLTITSCPKLQSLV*********QLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVE****************SSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGGELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCPLMEEKCRKDGGLLTHIPSVQIDLNGFLTAEQRTTEIFYY
Disordered Region (DISPRO)
***QTYIWKSHNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGGELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCPLMEEKCRKDGGLLTHIPSVQIDLNGFLTAEQRTTEIFYY
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKEQTYIWKSHNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGGELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCPLMEEKCRKDGGLLTHIPSVQIDLNGFLTAEQRTTEIFYY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	495	2.2.26 [Sep-21-2011]
Q9LRR5	1424	Putative disease resistan	yes	no	0.652	0.226	0.302	3e-23
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.749	0.285	0.247	3e-11
Q7XBQ9	970	Disease resistance protei	N/A	no	0.365	0.186	0.305	3e-09
Q7XA39	988	Putative disease resistan	N/A	no	0.377	0.189	0.296	2e-08
Q7XA40	992	Putative disease resistan	N/A	no	0.476	0.237	0.284	2e-08
P23799	630	Putative adenylate cyclas	N/A	no	0.640	0.503	0.261	2e-06
Q9LVT1	623	Putative disease resistan	no	no	0.218	0.173	0.267	3e-06
Q9RBS2	1024	Protein PopC OS=Ralstonia	no	no	0.448	0.216	0.303	3e-06
Q9FKZ0	815	Probable disease resistan	no	no	0.240	0.146	0.284	8e-06
P26337	630	Putative adenylate cyclas	N/A	no	0.597	0.469	0.258	9e-06

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score =  110 bits (274), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 118/390 (30%), Positives = 184/390 (47%), Gaps = 67/390 (17%)

Query: 97   LPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDIL 156
            LP  L+ + I+ CD L SLPE  + ++  +L  L I  C +L    G   P +LK L I 
Sbjct: 1089 LPQNLQSLHIDSCDGLTSLPEN-LTESYPNLHELLIIACHSLESFPGSHPPTTLKTLYIR 1147

Query: 157  SCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEV 216
             C   + L   E +Q + S                          +SQ      LE L +
Sbjct: 1148 DC---KKLNFTESLQPTRS--------------------------YSQ------LEYLFI 1172

Query: 217  GNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINI-SGCENLKILPSGLHNLGQLQEIE 275
            G+   +L +  +   PKL S++ R  +  S +T +I +G  + +I          L+ +E
Sbjct: 1173 GSSCSNLVNFPLSLFPKLRSLSIR--DCESFKTFSIHAGLGDDRI---------ALESLE 1221

Query: 276  IWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG--ELPSLEE 333
            I +C NL +FP+GGLP  KLS + +  C++L+ALP+ L  LTSL  L I    E+ ++  
Sbjct: 1222 IRDCPNLETFPQGGLPTPKLSSMLLSNCKKLQALPEKLFGLTSLLSLFIIKCPEIETIPG 1281

Query: 334  DGLPTNLHSLHIWGNMEIWKSMIERGR-GFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGT 392
             G P+NL +L I     +   +  R   G     +LR+L I+G ++D+ SFP E      
Sbjct: 1282 GGFPSNLRTLCI----SLCDKLTPRIEWGLRDLENLRNLEIDGGNEDIESFPEEGL---- 1333

Query: 393  ALPLPASLTSLRIVDFPNLERLS-SSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLS 451
               LP S+ SLRI  F NL+ L+     D + +  + +  C KL+   ++ LP  L  L 
Sbjct: 1334 ---LPKSVFSLRISRFENLKTLNRKGFHDTKAIETMEISGCDKLQISIDEDLP-PLSCLR 1389

Query: 452  IYRCPLMEE---KCRKDGGLLTHIPSVQID 478
            I  C L+ E   +   +   + +IP V+ID
Sbjct: 1390 ISSCSLLTETFAEVETEFFKVLNIPYVEID 1419

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 70.5 bits (171), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 106/429 (24%), Positives = 186/429 (43%), Gaps = 58/429 (13%)

Query: 65   LVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTN 124
            L KL + +L L SL+E+ +   ++L   P+++L   L+ +++ GC +L +LP +      
Sbjct: 602  LEKLWEGTLPLGSLKEMNLRYSNNLKEIPDLSLAINLEELDLVGCKSLVTLPSS--IQNA 659

Query: 125  SSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTS 184
            + L  L +  C+ L          SL+ L++  C N+R     +   S       R    
Sbjct: 660  TKLIYLDMSDCKKLESFPTDLNLESLEYLNLTGCPNLRNFPAIKMGCSDVDFPEGRN--- 716

Query: 185  SLLEKLEIRDCPSLTCIFSQNELPATLESLEV------GNLPPSLKSLFVWYCPKLESIA 238
                ++ + DC      F    LPA L+ L+           P   +       K E + 
Sbjct: 717  ----EIVVEDC------FWNKNLPAGLDYLDCLTRCMPCEFRPEQLAFLNVRGYKHEKLW 766

Query: 239  ERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKL 298
            E + +  SLE +++S  ENL  +P  L    +L+ + +  C++LV+ P       +L +L
Sbjct: 767  EGIQSLGSLEGMDLSESENLTEIPD-LSKATKLESLILNNCKSLVTLPSTIGNLHRLVRL 825

Query: 299  RIYGCERLEALPKGLHNLTSLQQLTIGG-------------------ELPSLEEDGLPTN 339
             +  C  LE LP  + NL+SL+ L + G                   E  ++EE  +P+ 
Sbjct: 826  EMKECTGLEVLPTDV-NLSSLETLDLSGCSSLRSFPLISTNIVWLYLENTAIEE--IPST 882

Query: 340  LHSLHIWGNMEIWK-SMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRL------GT 392
            + +LH    +E+ K + +E        SSL  L + GC   + SFPL  + +       T
Sbjct: 883  IGNLHRLVRLEMKKCTGLEVLPTDVNLSSLETLDLSGC-SSLRSFPLISESIKWLYLENT 941

Query: 393  A------LPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSS 446
            A      L    +L +L++ +  +L  L ++I +LQ L    + +C  L+  P     SS
Sbjct: 942  AIEEIPDLSKATNLKNLKLNNCKSLVTLPTTIGNLQKLVSFEMKECTGLEVLPIDVNLSS 1001

Query: 447  LLQLSIYRC 455
            L+ L +  C
Sbjct: 1002 LMILDLSGC 1010

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 104/213 (48%), Gaps = 32/213 (15%)

Query: 144 VQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFS 203
           ++ P SL++LDI    +++ L  +EG +              +LE++ I +CP LT    
Sbjct: 785 IRFP-SLRKLDIWDFGSLKGLLKKEGEEQFP-----------VLEEMIIHECPFLT---- 828

Query: 204 QNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNN-TSLETINISGCENLKILP 262
              L + L +L          SL + Y     S  E +  N  +L+ + IS C NLK LP
Sbjct: 829 ---LSSNLRAL---------TSLRICYNKVATSFPEEMFKNLANLKYLTISRCNNLKELP 876

Query: 263 SGLHNLGQLQEIEIWECENLVSFPEGGLP-CAKLSKLRIYGCERLEALPKGLHNLTSLQQ 321
           + L +L  L+ ++I  C  L S PE GL   + L++L +  C  L+ LP+GL +LT+L  
Sbjct: 877 TSLASLNALKSLKIQLCCALESLPEEGLEGLSSLTELFVEHCNMLKCLPEGLQHLTTLTS 936

Query: 322 LTIGG--ELPSLEEDGLPTNLHSLHIWGNMEIW 352
           L I G  +L    E G+  + H +    N+ I+
Sbjct: 937 LKIRGCPQLIKRCEKGIGEDWHKISHIPNVNIY 969

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 107/216 (49%), Gaps = 29/216 (13%)

Query: 124 NSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYT 183
           N S E  Y+E     +  +  +   SLK+L I    +++ L  EEG +            
Sbjct: 761 NGSAEVEYVEEDDVHSRFSTRRSFPSLKKLRIWFFRSLKGLMKEEGEEKFP--------- 811

Query: 184 SSLLEKLEIRDCPSLTCIFSQNELPATLESLEV-GNLP----------PSLKSLFVWYCP 232
             +LE++ I  CP    +F    L ++++ LEV GN             +L SL +    
Sbjct: 812 --MLEEMAILYCP----LFVFPTL-SSVKKLEVHGNTNTRGLSSISNLSTLTSLRIGANY 864

Query: 233 KLESIAERLDNN-TSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLP 291
           +  S+ E +  + T+LE ++    +NLK LP+ L +L  L+ ++I  C++L SFPE GL 
Sbjct: 865 RATSLPEEMFTSLTNLEFLSFFDFKNLKDLPTSLTSLNALKRLQIESCDSLESFPEQGLE 924

Query: 292 -CAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG 326
               L++L +  C+ L+ LP+GL +LT+L  L + G
Sbjct: 925 GLTSLTQLFVKYCKMLKCLPEGLQHLTALTNLGVSG 960

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 125/264 (47%), Gaps = 28/264 (10%)

Query: 104 IEIEGCDALKSLPEAWMCDTNSSLE----TLYIEHCRTLTYLAGVQLPRSLKRLDILSCD 159
           I I GC+    LP         SLE    ++ +E+     +L   + P SL++L I    
Sbjct: 741 ILISGCENCSCLPPFGELPCLESLELQDGSVEVEYVEDSGFLTRRRFP-SLRKLHIGGFC 799

Query: 160 NIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLT--CIFSQNELPATLESLEVG 217
           N++ L   +G +              +LE+++I DCP      + S  +L    E+ + G
Sbjct: 800 NLKGLQRMKGAEQFP-----------VLEEMKISDCPMFVFPTLSSVKKLEIWGEA-DAG 847

Query: 218 NLPP-----SLKSLFVWYCPKLESIAERLDNN-TSLETINISGCENLKILPSGLHNLGQL 271
            L       +L SL ++    + S+ E +  N  +L  +++S  ENLK LP+ L +L  L
Sbjct: 848 GLSSISNLSTLTSLKIFSNHTVTSLLEEMFKNLENLIYLSVSFLENLKELPTSLASLNNL 907

Query: 272 QEIEIWECENLVSFPEGGLP-CAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG--EL 328
           + ++I  C  L S PE GL   + L++L +  C  L+ LP+GL +LT+L  L I G  +L
Sbjct: 908 KCLDIRYCYALESLPEEGLEGLSSLTELFVEHCNMLKCLPEGLQHLTTLTSLKIRGCPQL 967

Query: 329 PSLEEDGLPTNLHSLHIWGNMEIW 352
               E G+  + H +    N+ I+
Sbjct: 968 IKRCEKGIGEDWHKISHIPNVNIY 991

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|P23799|ESAG8_TRYBB Putative adenylate cyclase regulatory protein OS=Trypanosoma brucei brucei GN=ESAG8 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 154/371 (41%), Gaps = 54/371 (14%)

Query: 21  LRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLRE 80
           L+ L I+SC ++  L A                LE L LS C  + K  +     S+LRE
Sbjct: 256 LKMLDISSCHEITDLTAIGGVRS----------LEKLSLSGCWNVTKGLEELCKFSNLRE 305

Query: 81  IEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTY 140
           ++I  C  L S   +     LK++ +  C   K L      +   +LE L +  C  ++ 
Sbjct: 306 LDISGCLVLGSAVVLKNLINLKVLSVSNCKNFKDLNGL---ERLVNLEKLNLSGCHGVSS 362

Query: 141 LAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTC 200
           L  V    +LK LDI  C+   +L   +G+Q  ++           LE L +RD  S T 
Sbjct: 363 LGFVANLSNLKELDISGCE---SLVCFDGLQDLNN-----------LEVLYLRDVKSFTN 408

Query: 201 IFSQNELPATLE----------SLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETI 250
           + +   L    E          SL        L+ L +  C ++ S  + + +   L  +
Sbjct: 409 VGAIKNLSKMRELDLSGCERITSLSGLETLKGLEELSLEGCGEIMSF-DPIWSLYHLRVL 467

Query: 251 NISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSK---LRIYGCERLE 307
            +S C NL+ L SGL  L  L+E+ +  C    +F     P   L     L +  CE L+
Sbjct: 468 YVSECGNLEDL-SGLQCLTGLEEMYLHGCRKCTNFG----PIWNLRNVCVLELSCCENLD 522

Query: 308 ALPKGLHNLTSLQQLTIGG--ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRF 365
            L  GL  LT L++L + G  E+ ++   G+  NL +L        W + ++   G  R 
Sbjct: 523 DLS-GLQCLTGLEELYLIGCEEITTI---GVVGNLRNLKCLST--CWCANLKELGGLERL 576

Query: 366 SSLRHLTIEGC 376
            +L  L + GC
Sbjct: 577 VNLEKLDLSGC 587

May be involved in the postranscriptional regulation of genes in VSG expression sites.

Trypanosoma brucei brucei (taxid: 5702)

>sp|Q9LVT1|DRL39_ARATH Putative disease resistance protein At5g47280 OS=Arabidopsis thaliana GN=At5g47280 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 58/112 (51%)

Query: 213 SLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQ 272
           ++++  + P L  + + YC  L  +   +   TSL +I+I+ C N+K LP  +  L  LQ
Sbjct: 455 AIDIAQIFPKLTDITIDYCDDLAELPSTICGITSLNSISITNCPNIKELPKNISKLQALQ 514

Query: 273 EIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTI 324
            + ++ C  L S P       +L  + I  C  L +LP+ + N+ +L+++ +
Sbjct: 515 LLRLYACPELKSLPVEICELPRLVYVDISHCLSLSSLPEKIGNVRTLEKIDM 566

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9RBS2|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2

 Score = 53.5 bits (127), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 121/264 (45%), Gaps = 42/264 (15%)

Query: 211 LESLEVGNLP------PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSG 264
           L+SL V  LP        LK+L    C  L ++   L+N   LET+++ G +N K LP  
Sbjct: 208 LKSLPVPELPDVTFEIAHLKNLETVDC-DLHALPATLENLFLLETLSLKGAKNFKALPDA 266

Query: 265 LHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNL-------- 316
           +  L  LQE+++ E   L S P  G   A L +L I     LE LP G  +L        
Sbjct: 267 VWRLPALQELKLSET-GLKSLPPVGGGSA-LQRLTIEDSP-LEQLPAGFADLDQLASLSL 323

Query: 317 --TSLQQLTIG-GELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHR------FSS 367
             T L++L+ G G+LP+L+   L  N     +  ++   + +   G   H        SS
Sbjct: 324 SNTKLEKLSSGIGQLPALKSLSLQDNPKLERLPKSLGQVEELTLIGGRIHALPSASGMSS 383

Query: 368 LRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHL 427
           L+ LT++  +  +   P +   LG    +  SL++ ++ D P      +SI +L  L  L
Sbjct: 384 LQKLTVD--NSSLAKLPADFGALGNLAHV--SLSNTKLRDLP------ASIGNLFTLKTL 433

Query: 428 NLVDCPKLKYFPEKGLPSSLLQLS 451
           +L D PKL       LP+S  QLS
Sbjct: 434 SLQDNPKLGS-----LPASFGQLS 452

Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

>sp|Q9FKZ0|DRL43_ARATH Probable disease resistance protein At5g66910 OS=Arabidopsis thaliana GN=At5g66910 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 4/123 (3%)

Query: 212 ESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQL 271
           E ++V     +L+ + + YC  L+ +   +    SL+T++I+ C  L  LP  + NL +L
Sbjct: 646 EDIDVSKALSNLQEIDIDYCYDLDELPYWIPEVVSLKTLSITNCNKLSQLPEAIGNLSRL 705

Query: 272 QEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTI----GGE 327
           + + +  C NL   PE     + L  L I  C  L  LP+ +  L  L+ +++    G E
Sbjct: 706 EVLRMCSCMNLSELPEATERLSNLRSLDISHCLGLRKLPQEIGKLQKLENISMRKCSGCE 765

Query: 328 LPS 330
           LP 
Sbjct: 766 LPD 768

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P26337|ESA8C_TRYEQ Putative adenylate cyclase regulatory protein OS=Trypanosoma equiperdum GN=ESAG8C PE=2 SV=1

 Score = 52.4 bits (124), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 140/336 (41%), Gaps = 40/336 (11%)

Query: 54  LEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALK 113
           LE L LS C  + K  +     S+LRE++I  C  L S   +     LK++ +  C   K
Sbjct: 279 LEKLSLSGCWNVTKGLEELCKFSNLRELDISGCLVLGSAVVLKNLINLKVLSVSNCKNFK 338

Query: 114 SLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSS 173
            L      +   +L+ L +  C  ++ L  V    +LK LDI  C+   +L   +G+Q  
Sbjct: 339 DLNGL---ERLVNLDKLNLSGCHGVSSLGFVANLSNLKELDISGCE---SLVCFDGLQDL 392

Query: 174 SSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLE----------SLEVGNLPPSL 223
           ++           LE L +RD  S T + +   L    E          SL        L
Sbjct: 393 NN-----------LEVLYLRDVKSFTNVGAIKNLSKMRELDLSGCERITSLSGLETLKGL 441

Query: 224 KSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLV 283
           + L +  C ++ S  + + +   L  + +S C NL+ L SGL  +  L+E+ +  C    
Sbjct: 442 EELSLEGCGEIMSF-DPIWSLHHLRVLYVSECGNLEDL-SGLEGITGLEELYLHGCRKCT 499

Query: 284 SFPEGGLPCAKLSKLRIY---GCERLEALPKGLHNLTSLQQLTIGGELPSLEEDGLPTNL 340
           +F     P   L  + +     CE LE L  GL  LT L++L + G    +   G+  NL
Sbjct: 500 NFG----PIWNLRNVCVVELSCCENLEDLS-GLQCLTGLEELYLIG-CEEITPIGVVGNL 553

Query: 341 HSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGC 376
            +L        W + ++   G  R  +L  L + GC
Sbjct: 554 RNLKCLST--CWCANLKELGGLDRLVNLEKLDLSGC 587

May be involved in the postranscriptional regulation of genes in VSG expression sites.

Trypanosoma equiperdum (taxid: 5694)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	495
224132254	552	predicted protein [Populus trichocarpa]	0.921	0.826	0.415	2e-75
356554923	1399	PREDICTED: putative disease resistance R	0.747	0.264	0.449	6e-70
284026888	1424	CC-NBS-LRR protein [Quercus suber]	0.868	0.301	0.399	3e-63
45826061	739	resistance protein [Quercus suber]	0.820	0.549	0.399	2e-60
400131587	1388	FB_MR5 [Malus x robusta]	0.789	0.281	0.382	8e-56
359487225	1373	PREDICTED: putative disease resistance R	0.844	0.304	0.353	2e-52
224059584	1418	cc-nbs-lrr resistance protein [Populus t	0.886	0.309	0.359	6e-52
225449872	1322	PREDICTED: putative disease resistance p	0.719	0.269	0.380	4e-50
225449649	1418	PREDICTED: putative disease resistance p	0.832	0.290	0.360	5e-50
147844597	1289	hypothetical protein VITISV_035224 [Viti	0.715	0.274	0.384	9e-50

>gi|224132254|ref|XP_002328223.1| predicted protein [Populus trichocarpa] gi|222837738|gb|EEE76103.1| predicted protein [Populus trichocarpa]

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 209/503 (41%), Positives = 286/503 (56%), Gaps = 47/503 (9%)

Query: 3   EQTYIWKSHNELLQDICSLRRLTITSCPKLQSLV-AEEEKDQQQQLCELSCRLEYLRLSY 61
           E T ++++   L + + SL +L + +CP++ SL+  E     QQQL   +C+LE L  S 
Sbjct: 55  ELTSLYENGVALAKQLTSLLKLEVRNCPQVVSLMEGEVPVYMQQQLA--NCKLESLTFST 112

Query: 62  CEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEA--- 118
           CE L KLPQ   SL SL+E++I  C  L+SFPE  LPS L+IIEI GC+AL  LP A   
Sbjct: 113 CESLKKLPQWVHSLVSLKELKIQYCPRLLSFPEAGLPSTLRIIEIVGCNALTPLPAAVTY 172

Query: 119 -WMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSS 177
             MC     LE L IE+C +L     +QLP +LK+L+I  C+N+  L +++G  SSS  S
Sbjct: 173 NMMC-----LEQLRIENCESLISFGRIQLPPTLKKLEIRYCENLLCL-LDDGEGSSSKKS 226

Query: 178 ----SNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEV------------GNLPP 221
               S     SSLLE L +  C SLT I    ELP+ L+ L+V              LP 
Sbjct: 227 DENTSCSGNNSSLLEYLYVGICNSLTSI---GELPSALKYLQVCSCSKLKSLSSRDKLPA 283

Query: 222 SLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECEN 281
            LK L +  C  LES+ +R  +N SLE + I  C NL+ LP GLH L  L+EI IW C  
Sbjct: 284 GLKHLAIDSCENLESMPDRFQDNMSLENLKIWFCFNLRSLPEGLHKLCHLREISIWYCPA 343

Query: 282 LVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIG--GELPSLEEDGLPTN 339
           LVSF   GLP   L +L I  C+ L+A+P  +HNL SL++L+I    ++ S  E+G PT+
Sbjct: 344 LVSFAAEGLP-INLRRLFIIKCDGLKAIPDHMHNLMSLEELSIYYCPDIVSFPEEGFPTS 402

Query: 340 LHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPAS 399
           L  L     +++    +    G H+ S+LR L I+G     +SFP  D      + LP++
Sbjct: 403 LTYL---ATVDLKICELLFNWGMHKLSALRTLIIQG-GFSHISFPSVD----MGVRLPSA 454

Query: 400 LTSLRIVDFPNLERLS-SSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCPLM 458
           L  L I DFPNLE LS S   +L +L  L++ DCPKL  FP KGLPSSLL+L I  CPL+
Sbjct: 455 LNRLSIEDFPNLEYLSYSGFQNLSSLERLSISDCPKLTSFPGKGLPSSLLELRIRACPLL 514

Query: 459 EEKCR---KDGGLLTHIPSVQID 478
            ++ +   K+   + HIP + ID
Sbjct: 515 VQQIKGRVKEWLKIRHIPYINID 537

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554923|ref|XP_003545790.1| PREDICTED: putative disease resistance RPP13-like protein 1-like [Glycine max]

 Score =  271 bits (693), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 184/409 (44%), Positives = 250/409 (61%), Gaps = 39/409 (9%)

Query: 96   ALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDI 155
             L S L++IEI  C+ +KS+P+  M +++  LE LYI HC ++ ++   QLP SLK L+I
Sbjct: 993  GLSSILRLIEIRNCNIMKSIPKVLMVNSHF-LERLYICHCDSIVFVTMDQLPHSLKSLEI 1051

Query: 156  LSCDNIRTLTVEEGIQSSSS---SSSNRRYTSSLLEKLE---IRDCPSLTCIFSQNELPA 209
             +C N+R L ++ G  +SSS      N ++ S+++  LE   I  CPSLTCI    ELP 
Sbjct: 1052 SNCKNLRCL-LDNGTCTSSSIIMHDDNVQHGSTIISHLEYVYIGWCPSLTCISRSGELPE 1110

Query: 210  TLESLEV------------GNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCEN 257
            +++ L +            G LP S++ L +  CPKLESIA RL  NTSLE+I I  CEN
Sbjct: 1111 SVKHLFIWNCSELSCLSMKGQLPKSIERLEIQSCPKLESIANRLHRNTSLESIQIWNCEN 1170

Query: 258  LKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLT 317
            LK LP GLH L  L+EI+I  C NLVSFPE GLP + LS+L I  CE+L ALP  ++NL 
Sbjct: 1171 LKSLPEGLHFLVNLKEIKIIGCPNLVSFPEEGLPASSLSELSIMSCEKLVALPNSMYNLD 1230

Query: 318  SLQQLTIGGELPSLE---EDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIE 374
            SL++L I G  PS++   E   P NL SL I  +    ++M     G ++ S LR LTI 
Sbjct: 1231 SLKELEI-GYCPSIQYFPEINFPDNLTSLWI-NDHNACEAMF--NWGLYKLSFLRDLTII 1286

Query: 375  GCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-SIVDLQNLTHLNLVDCP 433
            G +  M   PLE  +LGT   LP++LTSL +  FP+LE LSS     L +L+ L++ +CP
Sbjct: 1287 GGNLFM---PLE--KLGTM--LPSTLTSLTVQGFPHLENLSSEGFHKLTSLSKLSIYNCP 1339

Query: 434  KLKYFPEKGLPSSLLQLSIYRCPLMEEKCRKDGGL----LTHIPSVQID 478
            KL   PEKGLPSSLL+L I  CP ++E+CRKD G     +  +P V+ID
Sbjct: 1340 KLLCLPEKGLPSSLLELYIQDCPFLKEQCRKDKGRDWLKIADVPYVEID 1388

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284026888|gb|ADB66335.1| CC-NBS-LRR protein [Quercus suber]

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 189/473 (39%), Positives = 259/473 (54%), Gaps = 43/473 (9%)

Query: 53   RLEYLRLSYCEGLV----KLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEG 108
            ++EYL++   E L     K+P+    L  LRE+ I  C +LVSFP    PS LK+I+I+ 
Sbjct: 957  KVEYLKIVDSEKLTTLWEKIPEGLHRLKFLRELSIEDCPTLVSFPASGFPSMLKVIQIKS 1016

Query: 109  CDALKSL-PEAWM-CDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTL-- 164
            C  LKSL PE  +    N+ LE L +  C ++  +A  QLP +LK+L+I  C N++ +  
Sbjct: 1017 CSGLKSLLPEGTLHSRENACLERLCVVRCDSMKSIARGQLPTTLKKLEISHCMNLQCVLD 1076

Query: 165  ---TVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESL------- 214
                            +NR  T   L+ L+I+ CPSLT + S  +LPATL  L       
Sbjct: 1077 EGEGSSSSSGMHDEDINNRSKTH--LQYLDIKSCPSLTTLTSSGKLPATLTHLLLRECPK 1134

Query: 215  -----EVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLG 269
                   G LP +L+ L +    KL+ IAERL  NTSLE I I  C  LK LP  LHNL 
Sbjct: 1135 LMCLSSTGKLPAALQYLEIQSISKLQKIAERLHQNTSLECIKIWNCHGLKSLPEDLHNLS 1194

Query: 270  QLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGGELP 329
            +L++  I+ C++  SFP  GLP + L  L I  C+ L+ALP G+ NLTSLQ+L I   L 
Sbjct: 1195 KLRQFLIFWCQSFSSFPAAGLP-SNLRVLGIKNCKNLKALPNGMRNLTSLQKLDISHRLD 1253

Query: 330  SL--EEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLED 387
            SL   ++GLPTNL  L++  +++ +K M E   G  + +SL  L+I G   D+ S+P E 
Sbjct: 1254 SLPSPQEGLPTNLIELNM-HDLKFYKPMFE--WGLQQPTSLIKLSIHGECLDVDSYPGER 1310

Query: 388  KRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLN---LVDCPKLKYFPEKGLP 444
            +  G  + LP SL+ L I  F NLE LS      QNLT LN   + +C KL   P++GLP
Sbjct: 1311 EN-GVMMLLPNSLSILCISYFQNLECLSPK--GFQNLTSLNQLKIYNCLKLTSLPKEGLP 1367

Query: 445  SSLLQLSIYRCPLMEEKCRKDGGL----LTHIPSVQIDLNGFLTAEQRTTEIF 493
             SL QL I  CPL+ + C  + G     + HIP V ID N F+  E  TT+ F
Sbjct: 1368 PSLTQLEIRNCPLLSQHCNNEKGQEWSKIAHIPCVLID-NKFI-HETVTTDSF 1418

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|45826061|gb|AAS77675.1| resistance protein [Quercus suber]

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 177/443 (39%), Positives = 240/443 (54%), Gaps = 37/443 (8%)

Query: 53  RLEYLRLSYCEGLV----KLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEG 108
           ++EYL++   E L     K+P+    L  LRE+ I  C +LVSFP    PS LK+I+I+ 
Sbjct: 298 KVEYLKIVDSEKLTTLWEKIPEGLHRLKFLRELSIEDCPTLVSFPASGFPSMLKVIQIKS 357

Query: 109 CDALKSL-PEAWM-CDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIR---- 162
           C  LKSL PE  +    N+ L  L +  C ++  +A  QLP +LKRL+I  C N++    
Sbjct: 358 CSGLKSLLPEGTLHSRENACLVRLCVVRCDSMKSIARGQLPTTLKRLEISHCMNLQCALD 417

Query: 163 -TLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESL------- 214
                           +NR  T   L+ L+I+ CPSLT + S  +LPATL  L       
Sbjct: 418 EGEGSSSSSVMHDEDINNRSKTH--LQYLDIKSCPSLTTLTSSGKLPATLTHLLLRECPK 475

Query: 215 -----EVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLG 269
                  G LP +L+ L +   PKL+ IAERL  NT LE I I  C  LK LP  LHNL 
Sbjct: 476 LMCLSSTGKLPAALQYLEIQSIPKLQKIAERLHQNTFLECIKIWNCHGLKSLPEDLHNLS 535

Query: 270 QLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGGELP 329
           +L++ +I  C +  SFP  GLP +    L I  C+ L+ALP G+ NLTSLQ+L I   L 
Sbjct: 536 KLRQFQIVWCTSFSSFPAAGLP-SNPRVLGIKNCKNLKALPNGMRNLTSLQKLDISNRLD 594

Query: 330 SL--EEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLED 387
           SL   ++GLPTNL  L++  +++ +K M E   G  + +SL  L+I G   D+ SFP E 
Sbjct: 595 SLPSPQEGLPTNLIELNMI-DLKFYKPMFE--WGLQQLTSLIKLSIHGECLDVDSFPGER 651

Query: 388 KRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLN---LVDCPKLKYFPEKGLP 444
           +  G  + LP SL+ L I  F NLE LS      QNLT LN   + +C KL   P++GLP
Sbjct: 652 EN-GAMMLLPNSLSILCISYFQNLECLSPK--GFQNLTSLNQLKIYNCLKLTSLPKEGLP 708

Query: 445 SSLLQLSIYRCPLMEEKCRKDGG 467
            SL QL I  CPL+ + C  + G
Sbjct: 709 PSLTQLEIRNCPLLSQHCNNEKG 731

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|400131587|emb|CCH50986.1| FB_MR5 [Malus x robusta]

 Score =  224 bits (571), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 186/486 (38%), Positives = 252/486 (51%), Gaps = 95/486 (19%)

Query: 9    KSHNELLQDICSLRRLTITSCPKLQSLVAEE---EKDQQQQLCELSCRLEYLRLSYCEGL 65
            K+   LLQ + SL RL I       SL+ EE   E D+  QL  L C+LE+L+L  C+ L
Sbjct: 978  KNEAILLQQLISLGRLEIED----NSLLVEELGKEADELLQLQILGCKLEFLKLKKCKNL 1033

Query: 66   VKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNS 125
            +KLP+    LSSL+E+ I++CSSLVSFP+V LP  LK IEI                   
Sbjct: 1034 LKLPEGLNQLSSLQELRIHECSSLVSFPDVGLPPSLKDIEIT------------------ 1075

Query: 126  SLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSS 185
                     C +L Y A  Q+P++L+R+ I  C ++R+L   E + S SSSS N      
Sbjct: 1076 --------ECHSLIYFAKSQIPQNLRRIQIRDCRSLRSLVDNEAVGSCSSSSHN------ 1121

Query: 186  LLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAER--LDN 243
             LE L I  C SLT +   ++L   L  L++            + C +LE +A      N
Sbjct: 1122 CLEYLNIERCQSLTLLSLSDQLVRALRELDI------------YDCEQLEFLAPDGLFCN 1169

Query: 244  NTS--LETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIY 301
            NT+  LE   I  C+NLK LP                         GG+  + L ++RI 
Sbjct: 1170 NTNYFLENFRIRRCQNLKSLPR----------------------LSGGIRGSNLREIRIT 1207

Query: 302  GCERLEALPKGLHNLTSLQQLTIGGELPSLEEDGL----PTNLHSLHIWGNMEIWKSMIE 357
             C+RLEALP+ +HN  SL++L I         +GL    P NL SL IW  ++  KS+ E
Sbjct: 1208 DCDRLEALPEDMHNFNSLEKLIID------YREGLTCSFPANLTSLMIW-KVKSCKSLWE 1260

Query: 358  RGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSS 417
               G HR +SLR+L I G D DMVSFP +  R+ T LP   SLT L I  FPNL++LSS 
Sbjct: 1261 LEWGLHRLTSLRYLWIGGEDPDMVSFPPDMVRMETLLP--KSLTELSIGGFPNLKKLSSK 1318

Query: 418  IVD-LQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCPLMEEKCRKDGGL----LTHI 472
                L +L  L L DCPKL   P++GLP SL +L IY CP+++E+C+   G     ++HI
Sbjct: 1319 GFQFLTSLESLELWDCPKLASIPKEGLPLSLTELCIYGCPVLKERCQPGKGRYWHKISHI 1378

Query: 473  PSVQID 478
            P + ID
Sbjct: 1379 PYIDID 1384

Source: Malus x robusta

Species: Malus x robusta

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487225|ref|XP_002268551.2| PREDICTED: putative disease resistance RPP13-like protein 1-like [Vitis vinifera]

 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 178/504 (35%), Positives = 246/504 (48%), Gaps = 86/504 (17%)

Query: 23   RLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIE 82
            +L I+ CP L    +      +Q+L    C L+ LR+     L KLP    +L+ L +++
Sbjct: 901  KLDISCCPNLGFASSRFASLGEQRL---PCNLKMLRIHDDANLEKLPNGLQTLTCLEQLD 957

Query: 83   IYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWM-CDTNSSLETLYIEHCRTLTYL 141
            I  C SL  FP   LP+ LK + I+ C  L++LPE  M  D+   LE L IE C  L   
Sbjct: 958  ITGCPSLRCFPNCELPTTLKSLCIKDCKNLEALPEGMMHHDSTCCLEELKIEGCPRLESF 1017

Query: 142  AGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCI 201
                LP  L+RL++  C  +++L                 Y+S  LE LEI DCPSL C 
Sbjct: 1018 PDTGLPPLLRRLEVSECKGLKSLP--------------HNYSSCALESLEISDCPSLRC- 1062

Query: 202  FSQNELPATLESL---------------------------------------EVGNLPPS 222
            F   ELP TL+S+                                       + G LP +
Sbjct: 1063 FPNGELPTTLKSIWIQDCENLESLPEGMMHHDSTCCLEEVIIMGCPRLESFPDTGELPST 1122

Query: 223  LKSLFVWYCPKLESIAERL-DNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECEN 281
            LK L +  CP LES++E +  NN++L+ + + G  NLKILP  LH+L  LQ   I  CE 
Sbjct: 1123 LKKLEICGCPDLESMSENMCPNNSALDNLVLEGYPNLKILPECLHSLKSLQ---IINCEG 1179

Query: 282  LVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTI----GGELPSLEEDGLP 337
            L  FP  GL    L+ LRI GCE L++LP  + +L SL+ LTI    G E  S  EDG+P
Sbjct: 1180 LECFPARGLSTPTLTSLRIEGCENLKSLPHQMRDLKSLRDLTILFCPGVE--SFPEDGMP 1237

Query: 338  TNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLP 397
             NL SL I     + K +      FH  +SL  LTIE    DMVSF  E+        LP
Sbjct: 1238 PNLISLEISYCENLKKPI----SAFHTLTSLFSLTIENVFPDMVSFRDEE------CLLP 1287

Query: 398  ASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCPL 457
             SLTSLRI    +L  L  S+ +L +L +L +  CP L       +P++L +L I+ CP+
Sbjct: 1288 ISLTSLRITAMESLAYL--SLQNLISLQYLEVATCPNLGSL--GSMPATLEKLEIWCCPI 1343

Query: 458  MEEKCRKDGG----LLTHIPSVQI 477
            +EE+  K+ G     + HIP + +
Sbjct: 1344 LEERYSKEKGEYWPKIAHIPCIAM 1367

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059584|ref|XP_002299919.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222847177|gb|EEE84724.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  211 bits (537), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 180/501 (35%), Positives = 244/501 (48%), Gaps = 62/501 (12%)

Query: 1    MKEQTYIWKSHNELLQDICSLRRLTITSCPKLQSL------VAEEEKDQQQQLCELSCRL 54
            M   TY+     +LLQ + +L+ L I+  PKL SL      +   E  Q   L E+    
Sbjct: 952  MSRLTYL---KGQLLQSLGALKVLMISDFPKLTSLWQKGTGLENFEHPQFVSLTEIGMPS 1008

Query: 55   EYL--RLSYCEGLVKLPQSSLS-LSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDA 111
             +   +LS C+ L  LP  ++  L SL ++ I  C +LVS PE  L S L+ + +  C A
Sbjct: 1009 THKSSKLSGCDKLDLLPIHTVHMLLSLEDLCIESCPNLVSIPEAGLLSSLRHLVLRDCKA 1068

Query: 112  LKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQ 171
            L+SLP+     +N  LE L IE C +L    G  LP +LK L I  C  +++L       
Sbjct: 1069 LRSLPDGM---SNCPLEDLEIEECPSLECFPGRMLPATLKGLKIRYCTELKSLP------ 1119

Query: 172  SSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYC 231
                 + N   T    E LEI  CPSL             +S   G LP  LK+L +W C
Sbjct: 1120 EDLMHNKNGPGTLCHFEHLEIIGCPSL-------------KSFPDGKLPTRLKTLKIWDC 1166

Query: 232  PKLESIAER-LDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGL 290
             +L+ ++E  L ++ SLE + IS CE L   P  L +   L E+ +  C  L  FP  G 
Sbjct: 1167 SQLKPLSEMMLHDDMSLEYLAISDCEALSSFPECLSSFKHLSELNLSNCSALKLFPGVGF 1226

Query: 291  PCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG--ELPSLEEDGLPTNLHSLHIW-- 346
            P A L  L IY C+ L++LP  +  LTSLQ+LTI     L S     +P +L SL IW  
Sbjct: 1227 PPANLRTLTIYNCKNLKSLPNEMRKLTSLQELTICSCPALKSFPNGDMPPHLTSLEIWDC 1286

Query: 347  ----GNMEIWKSMIERGRGFHRFSSLRHLTIE-GCDDDMVSFPLEDKRLGTALPLPASLT 401
                G +  W             + LR  +I  GC    VSFP ++K L     LP +LT
Sbjct: 1287 DNLDGCLSEW--------NLQSLTCLRDFSIAGGCFSHTVSFP-DEKCL-----LPTNLT 1332

Query: 402  SLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCPLMEEK 461
            S+ I   PNLE LS  +  L  L  L +VDCPKLK  P   LP +L + SI  CPLM ++
Sbjct: 1333 SVWIGRLPNLESLSMQLQSLAYLEELEIVDCPKLKSLPRGCLPHALGRFSIRDCPLMTQR 1392

Query: 462  CRKDGG----LLTHIPSVQID 478
            C K  G    L++HIP V+ID
Sbjct: 1393 CSKLKGVYWPLISHIPCVEID 1413

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449872|ref|XP_002265429.1| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]

 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 164/431 (38%), Positives = 231/431 (53%), Gaps = 75/431 (17%)

Query: 62   CEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMC 121
            C   V+LP   L L+SLR++ I +C SL S PE+ LP  L+ + IE C  L++LPE  M 
Sbjct: 948  CSIQVELPTILLKLTSLRKLVIKECQSLSSLPEMGLPPMLETLRIEKCHILETLPEG-MT 1006

Query: 122  DTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRR 181
              N+SL++LYIE C +LT L  +                                     
Sbjct: 1007 LNNTSLQSLYIEDCDSLTSLPII------------------------------------- 1029

Query: 182  YTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFV-WYCPKLESIAER 240
               S L+ LEI+ C  +       ELP   E+    N  P L SL +   C  L S    
Sbjct: 1030 ---SSLKSLEIKQCGKV-------ELPLPEETSH--NYYPWLTSLHIDGSCDSLTSFP-- 1075

Query: 241  LDNNTSLETINISGCENLK--ILPSGLHN--LGQLQEIEIWECENLVSFPEGGLPCAKLS 296
            L   T LET+ I GCENL+   +P GL N  L  L+ IEI++C NLVSFP+GGLP + L 
Sbjct: 1076 LAFFTKLETLYI-GCENLESFYIPDGLRNMDLTSLRRIEIYDCPNLVSFPQGGLPASNLR 1134

Query: 297  KLRIYGCERLEALPKGLHN-LTSLQQLTIGG--ELPSLEEDGLPTNLHSLHIWGNMEIWK 353
             L I+ C +L++LP+ +H  LTSL+ LTI    E+ S  E GLPTNL SL+IW   ++ +
Sbjct: 1135 NLEIWVCMKLKSLPQRMHTLLTSLENLTIDDCPEIVSFPEGGLPTNLSSLYIWDCYKLME 1194

Query: 354  SMIERGRGFHRFSSLRHLTIE-GCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLE 412
            S  E   G     SL  L I  G ++ + SF  E       L LP++L SL I  FP+L+
Sbjct: 1195 SRKE--WGLQTLPSLGRLVIAGGTEEGLESFSEE------WLLLPSTLFSLEIRSFPDLK 1246

Query: 413  RLSS-SIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCPLMEEKCRKDGG---- 467
             L +  + +L +L  L + DC KLK FP++GLP+SL  L I+RCP+++++C++D G    
Sbjct: 1247 SLDNLGLENLTSLERLVISDCVKLKSFPKQGLPASLSILEIHRCPVLKKRCQRDKGKEWR 1306

Query: 468  LLTHIPSVQID 478
             + HIP +++D
Sbjct: 1307 KIAHIPRIKMD 1317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449649|ref|XP_002262753.1| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]

 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 174/483 (36%), Positives = 249/483 (51%), Gaps = 71/483 (14%)

Query: 15   LQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLS 74
             +++  +R L I  CPKL  L+AE++         L C LEYL ++ C  L KLP    S
Sbjct: 988  FENLSCIRHLVIVMCPKL-VLLAEDQP--------LPCNLEYLEINKCASLEKLPIGLQS 1038

Query: 75   LSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSS----LETL 130
            L+SLRE+ I KC  L S  E+  P  L  +E+  C+ L+SLP+  M +  +     LE L
Sbjct: 1039 LTSLRELSIQKCPKLCSLAEMDFPPMLISLELYDCEGLESLPDGMMINGENRNFCLLECL 1098

Query: 131  YIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKL 190
             I HC +L      +LP  LK L+I+ C  +++L   EG+     +          LE L
Sbjct: 1099 KIVHCPSLICFPRGELPSKLKELEIIDCAKLQSLP--EGLILGDHTCH--------LEFL 1148

Query: 191  EIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETI 250
             I  CP L+  F +  LP+T++ LE+ N            C +LESI+  L ++T+LE +
Sbjct: 1149 RIHRCPLLSS-FPRGLLPSTMKRLEIRN------------CKQLESIS-LLSHSTTLEYL 1194

Query: 251  NISGCENLKILPSG-LHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEAL 309
             I   + LKI  SG LH+L  L E+ I+ C  L SFPE G     L  L I  C+ L++L
Sbjct: 1195 RI---DRLKINFSGCLHSLKHLIELHIYSCSGLESFPERGFSSPNLKMLHIDDCKNLKSL 1251

Query: 310  PKGLHNLTSLQQLTIGG--ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSS 367
            P  + + TSL+ L I     L S  E+GL  NL S  I     +   + +   G H  +S
Sbjct: 1252 PLQMQSFTSLRDLRIYDCPNLVSFAEEGLSLNLTSFWIRNCKNLKMPLYQ--WGLHGLTS 1309

Query: 368  LRHLTIEG----CDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQN 423
            L+   I      CD D  S PL          LP +LT L I  F NLE LSS  + LQN
Sbjct: 1310 LQTFVINNVAPFCDHD--SLPL----------LPRTLTYLSISKFHNLESLSS--MGLQN 1355

Query: 424  LTHLNLVD---CPKLKYF-PEKGLPSSLLQLSIYRCPLMEEKCRKDGG----LLTHIPSV 475
            LT L +++   CPKL+ F P++GL ++L  L I  CP++E +CRK+ G    +++HIP +
Sbjct: 1356 LTSLEILEIYSCPKLQTFLPKEGLSATLSNLRIKFCPIIEARCRKNKGEDWPMISHIPRI 1415

Query: 476  QID 478
             +D
Sbjct: 1416 DMD 1418

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147844597|emb|CAN80064.1| hypothetical protein VITISV_035224 [Vitis vinifera]

 Score =  204 bits (519), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 166/432 (38%), Positives = 224/432 (51%), Gaps = 78/432 (18%)

Query: 62   CEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMC 121
            C   V+ P   L L+SLR++ I +C SL S PE+ LP  L+ + IE C  L++LPE  M 
Sbjct: 915  CSIQVEFPAILLMLTSLRKLVIKECQSLSSLPEMGLPPMLETLRIEKCHILETLPEG-MT 973

Query: 122  DTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRR 181
              N+SL++LYI+ C +LT L  +    SLK L+I+ C  +     EE         +   
Sbjct: 974  QNNTSLQSLYID-CDSLTSLPIIY---SLKSLEIMQCGKVELPLPEE---------TTHN 1020

Query: 182  YTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERL 241
            Y   L   L  R C SLT                  + P                    L
Sbjct: 1021 YYPWLTYLLITRSCDSLT------------------SFP--------------------L 1042

Query: 242  DNNTSLETINISGCENLKIL--PSGLHN--LGQLQEIEIWECENLVSFPEGGLPCAKLSK 297
               T LET+NI GC NL+ L  P G+ N  L  LQ I IW+C  LVSFP+GGLP + L  
Sbjct: 1043 AFFTKLETLNIWGCTNLESLYIPDGVRNMDLTSLQXIXIWDCPXLVSFPQGGLPASNLRS 1102

Query: 298  LRIYGCERLEALPKGLHN-LTSLQQLTIGG--ELPSLEEDGLPTNLHSLHIWGNMEIWKS 354
            L I  C +L++LP+ +H  LTSL  L I    E+ S  E GLPTNL SL IW   ++ +S
Sbjct: 1103 LWIRNCMKLKSLPQRMHTLLTSLDDLWIRDCPEIVSFPEGGLPTNLSSLEIWNCYKLMES 1162

Query: 355  MIERGRGFHRFSSLRHLTIE-GCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLER 413
              E   G     SLR+LTI  G ++   SF  E       L LP++L S  I DFP+L+ 
Sbjct: 1163 RKE--WGLQTLPSLRYLTIRGGTEEGWESFSEE------WLLLPSTLFSFSIFDFPDLKS 1214

Query: 414  LSSSIVDLQNLTH---LNLVDCPKLKYFPEKGLPSSLLQLSIYRCPLMEEKCRKDGGL-- 468
            L +  + LQNLT    L +VDC KLK FP++GLP SL  L I++CPL++++C +D G   
Sbjct: 1215 LDN--LGLQNLTSLEALRIVDCVKLKSFPKQGLP-SLSVLEIHKCPLLKKQCLRDKGKEW 1271

Query: 469  --LTHIPSVQID 478
              + HIP + +D
Sbjct: 1272 RNIAHIPKIVMD 1283

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00660113 hypothetical protein (552 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	495
PLN03210	1153	PLN03210, PLN03210, Resistant to P	7e-14
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-11
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-09

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 74.1 bits (182), Expect = 7e-14
 Identities = 72/228 (31%), Positives = 108/228 (47%), Gaps = 19/228 (8%)

Query: 233 KLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPC 292
           KLE + + + + T L  I++ G +NLK +P  L     L+ +++ +C +LV  P      
Sbjct: 622 KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYL 680

Query: 293 AKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG--ELPSLEEDGLPTNLHSLHIWGNME 350
            KL  L +  CE LE LP G+ NL SL +L + G   L S  +  + TN+  L +     
Sbjct: 681 NKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD--ISTNISWLDLDE--- 734

Query: 351 IWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDK-RLGTAL--PLPASLTSLRIVD 407
              + IE      R  +L  L +  C+  M S  L ++ +  T L   L  SLT L + D
Sbjct: 735 ---TAIEEFPSNLRLENLDELIL--CE--MKSEKLWERVQPLTPLMTMLSPSLTRLFLSD 787

Query: 408 FPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRC 455
            P+L  L SSI +L  L HL + +C  L+  P      SL  L +  C
Sbjct: 788 IPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGC 835

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 66.8 bits (163), Expect = 1e-11
 Identities = 78/280 (27%), Positives = 117/280 (41%), Gaps = 62/280 (22%)

Query: 63  EGLVKL--PQSSL--------SLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDAL 112
           E LVKL    S L        SL+ LR I++    +L   P++++ + L+ +++  C +L
Sbjct: 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL 670

Query: 113 KSLPEAWMCDTNSSLETLYIEHCRTLTYL-AGVQLPRSLKRLDILSCD----------NI 161
             LP +      + LE L +  C  L  L  G+ L +SL RL++  C           NI
Sbjct: 671 VELPSS--IQYLNKLEDLDMSRCENLEILPTGINL-KSLYRLNLSGCSRLKSFPDISTNI 727

Query: 162 RTLTVEEGIQSSSSSSSNRRYTSSLLEKL-EIRDCPSLTCIFSQNELPAT-LESLEVGNL 219
             L ++E   +     SN R     LE L E+  C   +    +   P T L ++    L
Sbjct: 728 SWLDLDE--TAIEEFPSNLR-----LENLDELILCEMKSEKLWERVQPLTPLMTM----L 776

Query: 220 PPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWEC 279
            PSL  LF             L +  SL             LPS + NL +L+ +EI  C
Sbjct: 777 SPSLTRLF-------------LSDIPSLVE-----------LPSSIQNLHKLEHLEIENC 812

Query: 280 ENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSL 319
            NL + P  G+    L  L + GC RL   P    N++ L
Sbjct: 813 INLETLPT-GINLESLESLDLSGCSRLRTFPDISTNISDL 851

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 60.7 bits (147), Expect = 1e-09
 Identities = 68/277 (24%), Positives = 118/277 (42%), Gaps = 53/277 (19%)

Query: 50  LSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGC 109
           ++  LE L+LS C  LV+LP S   L+ L ++++ +C +L   P       L  + + GC
Sbjct: 655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGC 714

Query: 110 DALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEG 169
             LKS P     D ++++  L ++      + + ++    L+ LD L    +++      
Sbjct: 715 SRLKSFP-----DISTNISWLDLDETAIEEFPSNLR----LENLDELILCEMKS------ 759

Query: 170 IQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVW 229
                             EKL  R  P LT + +               L PSL  LF+ 
Sbjct: 760 ------------------EKLWERVQP-LTPLMTM--------------LSPSLTRLFLS 786

Query: 230 YCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGG 289
             P L  +   + N   LE + I  C NL+ LP+G+ NL  L+ +++  C  L +FP+  
Sbjct: 787 DIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD-- 843

Query: 290 LPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG 326
                +S L +     +E +P  +   ++L  L + G
Sbjct: 844 -ISTNISDLNLSRTG-IEEVPWWIEKFSNLSFLDMNG 878

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	495
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.93
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.93
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.89
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.88
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.88
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.86
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.84
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.78
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.62
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.59
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.52
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.47
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.45
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.35
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.24
KOG4341	483	consensus F-box protein containing LRR [General fu	99.23
KOG4341	483	consensus F-box protein containing LRR [General fu	99.17
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.13
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.13
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.08
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.05
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.01
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.93
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.72
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.71
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.69
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.63
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.62
PRK15386	426	type III secretion protein GogB; Provisional	98.52
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.51
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.49
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.47
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.41
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.35
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.33
PRK15386	426	type III secretion protein GogB; Provisional	98.29
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.28
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.25
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.16
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.14
PLN03150	623	hypothetical protein; Provisional	98.06
PLN03150	623	hypothetical protein; Provisional	97.98
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.9
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.87
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.85
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.74
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.7
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.69
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.57
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.55
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.53
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.46
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.43
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.35
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.82
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.82
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.77
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.53
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.32
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.16
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.91
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.71
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.14
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.01
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	94.89
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.68
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.52
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.5
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.76
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.08
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	92.55
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	90.26
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	87.85

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=1.4e-30  Score=286.13  Aligned_cols=426  Identities=17%  Similarity=0.164  Sum_probs=199.5

Q ss_pred             ccccccccEEecccccccc-cccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCC
Q 011033           15 LQDICSLRRLTITSCPKLQ-SLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFP   93 (495)
Q Consensus        15 ~~~~~~L~~L~l~~c~~l~-~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~   93 (495)
                      +..+.+|++|+++++ .++ .+|.       +.+    ++|++|++++|...+.+|..++.+++|++|++++|.....+|
T Consensus       114 ~~~l~~L~~L~Ls~n-~l~~~~p~-------~~l----~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p  181 (968)
T PLN00113        114 FTTSSSLRYLNLSNN-NFTGSIPR-------GSI----PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP  181 (968)
T ss_pred             hccCCCCCEEECcCC-ccccccCc-------ccc----CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCC
Confidence            336667777777764 333 2222       123    556666666554434455555555566666665553333444


Q ss_pred             C-CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc-cCCCCccEEEeccCCCccccccccccc
Q 011033           94 E-VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV-QLPRSLKRLDILSCDNIRTLTVEEGIQ  171 (495)
Q Consensus        94 ~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~  171 (495)
                      . ++.+++|++|++++|.....+|..+..+  ++|+.|++++|.....+|.. ..+++|+.|+++++.....+  |..+.
T Consensus       182 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~~l~  257 (968)
T PLN00113        182 NSLTNLTSLEFLTLASNQLVGQIPRELGQM--KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI--PSSLG  257 (968)
T ss_pred             hhhhhCcCCCeeeccCCCCcCcCChHHcCc--CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecccc--ChhHh
Confidence            3 5555555555555555444455554444  55555555554322233332 44455555555543211111  21111


Q ss_pred             cCCC---------C----ccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhh
Q 011033          172 SSSS---------S----SSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIA  238 (495)
Q Consensus       172 ~~~~---------~----~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  238 (495)
                      .-.+         .    ........++|+.|++++|. +...     .|..+     .. .++|+.|++++|...+.+|
T Consensus       258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~-----~p~~~-----~~-l~~L~~L~l~~n~~~~~~~  325 (968)
T PLN00113        258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS-LSGE-----IPELV-----IQ-LQNLEILHLFSNNFTGKIP  325 (968)
T ss_pred             CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe-eccC-----CChhH-----cC-CCCCcEEECCCCccCCcCC
Confidence            0000         0    00000112334444444421 1100     01000     01 1345555555444444444


Q ss_pred             hhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCC------------------------CCCCCCC
Q 011033          239 ERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPE------------------------GGLPCAK  294 (495)
Q Consensus       239 ~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~------------------------~~~~~~~  294 (495)
                      ..+..+++|+.|++++|.....+|..++.+++|+.|++++|.....+|.                        .+..+++
T Consensus       326 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~  405 (968)
T PLN00113        326 VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS  405 (968)
T ss_pred             hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCC
Confidence            4444555555555554443334444444445555555544432223333                        3333444


Q ss_pred             CcEEEecCccccccccccccCCCCcceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceE
Q 011033          295 LSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHL  371 (495)
Q Consensus       295 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L  371 (495)
                      |+.|++++|.....+|..+..+++|+.|++++ .+....+.  ..+++|+.|++++|.... ..+.    ....++|+.|
T Consensus       406 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~p~----~~~~~~L~~L  480 (968)
T PLN00113        406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG-GLPD----SFGSKRLENL  480 (968)
T ss_pred             CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeee-ecCc----ccccccceEE
Confidence            44444444443333444444444444444444 22221111  234455555555554221 1111    1123455556


Q ss_pred             Eeeccccccc-cchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCCC-CCccccce
Q 011033          372 TIEGCDDDMV-SFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEK-GLPSSLLQ  449 (495)
Q Consensus       372 ~l~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~  449 (495)
                      ++++|  .+. .++..       +..+++|+.|++++|.-...+|..+..+++|++|++++|.-...+|.. ..+++|++
T Consensus       481 ~ls~n--~l~~~~~~~-------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  551 (968)
T PLN00113        481 DLSRN--QFSGAVPRK-------LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQ  551 (968)
T ss_pred             ECcCC--ccCCccChh-------hhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCE
Confidence            66555  322 22221       124567888888886555567777788888888888886543445442 23678888


Q ss_pred             eeccCCchhHHhhhcCCCeeeecceEEeccCccc
Q 011033          450 LSIYRCPLMEEKCRKDGGLLTHIPSVQIDLNGFL  483 (495)
Q Consensus       450 L~l~~c~~l~~~~~~~~~~i~~~~~~~i~~~~~~  483 (495)
                      |++++|.....+-.... .+..+..+++.+|.+.
T Consensus       552 L~Ls~N~l~~~~p~~l~-~l~~L~~l~ls~N~l~  584 (968)
T PLN00113        552 LDLSQNQLSGEIPKNLG-NVESLVQVNISHNHLH  584 (968)
T ss_pred             EECCCCcccccCChhHh-cCcccCEEeccCCcce
Confidence            88888865443322222 3555666667666554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=2.3e-30  Score=284.47  Aligned_cols=226  Identities=17%  Similarity=0.125  Sum_probs=175.9

Q ss_pred             CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEe
Q 011033          221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRI  300 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l  300 (495)
                      ++|+.|++++|.....+|.++..+++|+.|++.+|.....+|..+..+++|+.|++++|.....+|..+..+++|+.|++
T Consensus       356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  435 (968)
T PLN00113        356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI  435 (968)
T ss_pred             CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEEC
Confidence            56777777766666666666667777777777776655566777888899999999998655567777888899999999


Q ss_pred             cCccccccccccccCCCCcceeEecc-cc-ccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeecccc
Q 011033          301 YGCERLEALPKGLHNLTSLQQLTIGG-EL-PSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDD  378 (495)
Q Consensus       301 ~~~~~~~~~~~~l~~l~~L~~L~l~~-~l-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  378 (495)
                      ++|.....+|..+..+++|+.|++++ .+ ..+|.....++|+.|++++|.. ....+.   .+.++++|+.|++++|  
T Consensus       436 s~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l-~~~~~~---~~~~l~~L~~L~Ls~N--  509 (968)
T PLN00113        436 SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQF-SGAVPR---KLGSLSELMQLKLSEN--  509 (968)
T ss_pred             cCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCcc-CCccCh---hhhhhhccCEEECcCC--
Confidence            99987777777788899999999998 44 3444444567999999999984 334443   5788999999999998  


Q ss_pred             ccc-cchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCCC-CCccccceeeccCCc
Q 011033          379 DMV-SFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEK-GLPSSLLQLSIYRCP  456 (495)
Q Consensus       379 ~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~  456 (495)
                      .+. .+|...       ..+++|+.|++++|.-...+|..+..+++|++|++++|+....+|.. ..+++|++|++++|+
T Consensus       510 ~l~~~~p~~~-------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~  582 (968)
T PLN00113        510 KLSGEIPDEL-------SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH  582 (968)
T ss_pred             cceeeCChHH-------cCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCc
Confidence            444 445443       35679999999997666678889999999999999998765667764 347899999999997


Q ss_pred             hhH
Q 011033          457 LME  459 (495)
Q Consensus       457 ~l~  459 (495)
                      ...
T Consensus       583 l~~  585 (968)
T PLN00113        583 LHG  585 (968)
T ss_pred             cee
Confidence            543

>PLN03210 Resistant to P

Probab=99.93  E-value=1.3e-24  Score=239.47  Aligned_cols=343  Identities=21%  Similarity=0.297  Sum_probs=254.1

Q ss_pred             HHhhhhhcccccceeeccccc------CCccccccccCCC-CccEEEEeCCCCCCCCCCCCCCCCCcEEEEeCCCCCCcc
Q 011033           43 QQQQLCELSCRLEYLRLSYCE------GLVKLPQSSLSLS-SLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSL  115 (495)
Q Consensus        43 ~~~~l~~~~~~L~~L~ls~~~------~l~~l~~~~~~l~-~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~  115 (495)
                      .|.++    ++|+.|.+.++.      ....+|..+..++ +|+.|.+.++ .++.+|....+.+|+.|+++++. +..+
T Consensus       553 aF~~m----~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f~~~~L~~L~L~~s~-l~~L  626 (1153)
T PLN03210        553 AFKGM----RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNFRPENLVKLQMQGSK-LEKL  626 (1153)
T ss_pred             HHhcC----ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcCCccCCcEEECcCcc-cccc
Confidence            57777    888888886542      1124555555553 5888888886 67777764567888888888876 6667


Q ss_pred             ccccccCCCCCccEEecccCccccccccccCCCCccEEEeccCCCccccccccccccCCCCccCcccCccccceeeecCC
Q 011033          116 PEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDC  195 (495)
Q Consensus       116 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  195 (495)
                      +..+...  ++|+.|+++++..++.+|....+++|+.|++.+|..+..+  |..+.           ..++|+.|++++|
T Consensus       627 ~~~~~~l--~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~l--p~si~-----------~L~~L~~L~L~~c  691 (1153)
T PLN03210        627 WDGVHSL--TGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVEL--PSSIQ-----------YLNKLEDLDMSRC  691 (1153)
T ss_pred             ccccccC--CCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCcccc--chhhh-----------ccCCCCEEeCCCC
Confidence            7665544  7888888888777777887777888888888888777766  55442           2456888888888


Q ss_pred             CCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEE
Q 011033          196 PSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIE  275 (495)
Q Consensus       196 ~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~  275 (495)
                      +.++.+             +...-.++|+.|++++|..+..+|..   .++|+.|+++++ .+..+|..+ .+++|+.|.
T Consensus       692 ~~L~~L-------------p~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n-~i~~lP~~~-~l~~L~~L~  753 (1153)
T PLN03210        692 ENLEIL-------------PTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDET-AIEEFPSNL-RLENLDELI  753 (1153)
T ss_pred             CCcCcc-------------CCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCC-ccccccccc-ccccccccc
Confidence            887776             33323478888888888877776643   467888888874 466676654 577888888


Q ss_pred             eeCCCCcc------ccC-CCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc--ccccccCCCCCCccceeEee
Q 011033          276 IWECENLV------SFP-EGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG--ELPSLEEDGLPTNLHSLHIW  346 (495)
Q Consensus       276 l~~~~~l~------~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~--~l~~~~~~~~~~~L~~L~l~  346 (495)
                      +.++....      .++ .....+++|+.|++++|..+..+|..+.++++|+.|++++  .+..+|....+++|++|+++
T Consensus       754 l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls  833 (1153)
T PLN03210        754 LCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLS  833 (1153)
T ss_pred             ccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECC
Confidence            87653211      111 1222346899999999988888888889999999999987  67777776678899999999


Q ss_pred             ccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCe
Q 011033          347 GNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTH  426 (495)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~  426 (495)
                      +|..+... +      ....+|+.|++++|  .+..+|...       ..+++|+.|++++|++++.+|..+..+++|+.
T Consensus       834 ~c~~L~~~-p------~~~~nL~~L~Ls~n--~i~~iP~si-------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~  897 (1153)
T PLN03210        834 GCSRLRTF-P------DISTNISDLNLSRT--GIEEVPWWI-------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLET  897 (1153)
T ss_pred             CCCccccc-c------ccccccCEeECCCC--CCccChHHH-------hcCCCCCEEECCCCCCcCccCcccccccCCCe
Confidence            99865421 1      12368999999997  788888765       35679999999999999999988889999999


Q ss_pred             EeccCCCCCCCCCC
Q 011033          427 LNLVDCPKLKYFPE  440 (495)
Q Consensus       427 L~l~~c~~l~~l~~  440 (495)
                      +++++|.+++.++.
T Consensus       898 L~l~~C~~L~~~~l  911 (1153)
T PLN03210        898 VDFSDCGALTEASW  911 (1153)
T ss_pred             eecCCCcccccccC
Confidence            99999998886543

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.93  E-value=6.7e-27  Score=221.77  Aligned_cols=335  Identities=19%  Similarity=0.237  Sum_probs=160.9

Q ss_pred             cccceeecccccCCccc-cccccCCCCccEEEEeCCCCCCCCCCCCCC-CCCcEEEEeCCCCCCccccccccCCCCCccE
Q 011033           52 CRLEYLRLSYCEGLVKL-PQSSLSLSSLREIEIYKCSSLVSFPEVALP-SKLKIIEIEGCDALKSLPEAWMCDTNSSLET  129 (495)
Q Consensus        52 ~~L~~L~ls~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~  129 (495)
                      +.-+.|++++| .+..+ +..|-++++|+++++..| .++.+|.++.. ..|+.|++.+|...+.-...+...  +.|++
T Consensus        78 ~~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l--~alrs  153 (873)
T KOG4194|consen   78 SQTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSAL--PALRS  153 (873)
T ss_pred             cceeeeecccc-ccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHHHhH--hhhhh
Confidence            45566777776 44433 234567777777777765 66677765543 347777777765322222333222  66777


Q ss_pred             EecccCccccccccccCC--CCccEEEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCC
Q 011033          130 LYIEHCRTLTYLAGVQLP--RSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNEL  207 (495)
Q Consensus       130 L~l~~~~~l~~~~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  207 (495)
                      |+++. +.+.+++....+  .++++|++++ +.++.+  ..+-                                     
T Consensus       154 lDLSr-N~is~i~~~sfp~~~ni~~L~La~-N~It~l--~~~~-------------------------------------  192 (873)
T KOG4194|consen  154 LDLSR-NLISEIPKPSFPAKVNIKKLNLAS-NRITTL--ETGH-------------------------------------  192 (873)
T ss_pred             hhhhh-chhhcccCCCCCCCCCceEEeecc-cccccc--cccc-------------------------------------
Confidence            77766 345555444222  3566666655 234333  1100                                     


Q ss_pred             cccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcc-cccCCCCCCccEEEeeCCCCccccC
Q 011033          208 PATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKIL-PSGLHNLGQLQEIEIWECENLVSFP  286 (495)
Q Consensus       208 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~  286 (495)
                              ...+ .+|..|.+++|......+..|.++++|+.|++.+| .++.+ ...|.++++|+.|.+..| .+..+.
T Consensus       193 --------F~~l-nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN-~I~kL~  261 (873)
T KOG4194|consen  193 --------FDSL-NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRN-DISKLD  261 (873)
T ss_pred             --------cccc-chheeeecccCcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhc-Cccccc
Confidence                    0001 24555555544444444445555555555555552 23322 233455555555555554 333333


Q ss_pred             C-CCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccC
Q 011033          287 E-GGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGF  362 (495)
Q Consensus       287 ~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~  362 (495)
                      + .+..+.++++|++..|+....-..++.++++|+.|+++. .|..+...  ..+++|++|+++.|. ++..-+   ..+
T Consensus       262 DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~-i~~l~~---~sf  337 (873)
T KOG4194|consen  262 DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR-ITRLDE---GSF  337 (873)
T ss_pred             CcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc-cccCCh---hHH
Confidence            3 333445555555555442222223455555555555555 44444332  334555555555554 221111   134


Q ss_pred             CCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccc----ccccccCCCCCeEeccCCCCCCCC
Q 011033          363 HRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERL----SSSIVDLQNLTHLNLVDCPKLKYF  438 (495)
Q Consensus       363 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l----~~~~~~~~~L~~L~l~~c~~l~~l  438 (495)
                      ..++.|++|.+++|  .++.+....      +..+.+|++|||++ +.+...    ...+..+++|+.|++.| ++++.|
T Consensus       338 ~~L~~Le~LnLs~N--si~~l~e~a------f~~lssL~~LdLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I  407 (873)
T KOG4194|consen  338 RVLSQLEELNLSHN--SIDHLAEGA------FVGLSSLHKLDLRS-NELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSI  407 (873)
T ss_pred             HHHHHhhhhccccc--chHHHHhhH------HHHhhhhhhhcCcC-CeEEEEEecchhhhccchhhhheeecC-ceeeec
Confidence            44555555555554  444443322      23344555555555 333221    11344455555555555 345555


Q ss_pred             CCCCC--ccccceeeccCCc
Q 011033          439 PEKGL--PSSLLQLSIYRCP  456 (495)
Q Consensus       439 ~~~~~--~~~L~~L~l~~c~  456 (495)
                      +...+  ++.|+.|++.+++
T Consensus       408 ~krAfsgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  408 PKRAFSGLEALEHLDLGDNA  427 (873)
T ss_pred             chhhhccCcccceecCCCCc
Confidence            54322  4555555555554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.93  E-value=1.3e-26  Score=219.77  Aligned_cols=358  Identities=17%  Similarity=0.204  Sum_probs=236.7

Q ss_pred             cccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC--CCC
Q 011033           20 SLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--VAL   97 (495)
Q Consensus        20 ~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~   97 (495)
                      .-+.|++++ +++.++...    .|-++    ++|+.+.+.+| .+..+|...+...+|+.|+|.+| .+.++..  +..
T Consensus        79 ~t~~Ldlsn-Nkl~~id~~----~f~nl----~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~  147 (873)
T KOG4194|consen   79 QTQTLDLSN-NKLSHIDFE----FFYNL----PNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSA  147 (873)
T ss_pred             ceeeeeccc-cccccCcHH----HHhcC----Ccceeeeeccc-hhhhcccccccccceeEEeeecc-ccccccHHHHHh
Confidence            456799999 789988775    68888    99999999997 78999986667778999999997 7777654  778


Q ss_pred             CCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc--cCCCCccEEEeccCCCccccccccccccCCC
Q 011033           98 PSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTVEEGIQSSSS  175 (495)
Q Consensus        98 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  175 (495)
                      ++.|++||++.|. +..++..-+.. -.++++|++.+ +.++.+...  ..+.+|..|.+++ +.++.+  |....    
T Consensus       148 l~alrslDLSrN~-is~i~~~sfp~-~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkLsr-NrittL--p~r~F----  217 (873)
T KOG4194|consen  148 LPALRSLDLSRNL-ISEIPKPSFPA-KVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKLSR-NRITTL--PQRSF----  217 (873)
T ss_pred             Hhhhhhhhhhhch-hhcccCCCCCC-CCCceEEeecc-ccccccccccccccchheeeeccc-Cccccc--CHHHh----
Confidence            8999999999977 55555433322 17899999998 467776655  4456788888887 355555  32110    


Q ss_pred             CccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCC
Q 011033          176 SSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGC  255 (495)
Q Consensus       176 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  255 (495)
                            -..                                    +.|+.|++.+|..-..-...|.++++|+.|.+.+|
T Consensus       218 ------k~L------------------------------------~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN  255 (873)
T KOG4194|consen  218 ------KRL------------------------------------PKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN  255 (873)
T ss_pred             ------hhc------------------------------------chhhhhhccccceeeehhhhhcCchhhhhhhhhhc
Confidence                  001                                    45555555554432222334666777777777764


Q ss_pred             CCCCccc-ccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-cccccc
Q 011033          256 ENLKILP-SGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLE  332 (495)
Q Consensus       256 ~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~  332 (495)
                       .+..+. ..|..+.++++|+++.| .+..+.. ....++.|+.|++++|....--++.++..++|+.|+|+. .+..++
T Consensus       256 -~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~  333 (873)
T KOG4194|consen  256 -DISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD  333 (873)
T ss_pred             -CcccccCcceeeecccceeecccc-hhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCC
Confidence             333332 34556677777777776 4444443 445566777777777654443445666677777777777 666666


Q ss_pred             CCC--CCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccc
Q 011033          333 EDG--LPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPN  410 (495)
Q Consensus       333 ~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  410 (495)
                      ++.  ....|++|.++.|. ++....   ..+..+++|+.|++++|  .+.-...++   ...+..+++|++|++.+ ++
T Consensus       334 ~~sf~~L~~Le~LnLs~Ns-i~~l~e---~af~~lssL~~LdLr~N--~ls~~IEDa---a~~f~gl~~LrkL~l~g-Nq  403 (873)
T KOG4194|consen  334 EGSFRVLSQLEELNLSHNS-IDHLAE---GAFVGLSSLHKLDLRSN--ELSWCIEDA---AVAFNGLPSLRKLRLTG-NQ  403 (873)
T ss_pred             hhHHHHHHHhhhhcccccc-hHHHHh---hHHHHhhhhhhhcCcCC--eEEEEEecc---hhhhccchhhhheeecC-ce
Confidence            553  35677777777776 332222   35777788888888876  332222211   12334567888888888 78


Q ss_pred             cccccc-ccccCCCCCeEeccCCCCCCCCCCCCC-ccccceeecc
Q 011033          411 LERLSS-SIVDLQNLTHLNLVDCPKLKYFPEKGL-PSSLLQLSIY  453 (495)
Q Consensus       411 l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~l~  453 (495)
                      ++.||. .+.++++|++|++.+ +.+.+|....+ .-.|++|.+.
T Consensus       404 lk~I~krAfsgl~~LE~LdL~~-NaiaSIq~nAFe~m~Lk~Lv~n  447 (873)
T KOG4194|consen  404 LKSIPKRAFSGLEALEHLDLGD-NAIASIQPNAFEPMELKELVMN  447 (873)
T ss_pred             eeecchhhhccCcccceecCCC-Ccceeecccccccchhhhhhhc
Confidence            888887 778888888888888 45777655333 2256666443

>PLN03210 Resistant to P

Probab=99.92  E-value=8.4e-24  Score=233.11  Aligned_cols=343  Identities=23%  Similarity=0.358  Sum_probs=180.3

Q ss_pred             cCccccccccccEEeccccc-----ccc-cccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEe
Q 011033           11 HNELLQDICSLRRLTITSCP-----KLQ-SLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIY   84 (495)
Q Consensus        11 ~~~~~~~~~~L~~L~l~~c~-----~l~-~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~   84 (495)
                      ....|.+|++|+.|.+....     ... .+|.+     +..+   +++|+.|.+.++ .+..+|..+ .+.+|++|+++
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~-----~~~l---p~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~  619 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEG-----FDYL---PPKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQ  619 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcc-----hhhc---CcccEEEEecCC-CCCCCCCcC-CccCCcEEECc
Confidence            34557778888888776521     011 22222     4333   234666666665 445666544 45666666666


Q ss_pred             CCCCCCCCCC-CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc-cCCCCccEEEeccCCCcc
Q 011033           85 KCSSLVSFPE-VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV-QLPRSLKRLDILSCDNIR  162 (495)
Q Consensus        85 ~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~  162 (495)
                      +| .+..++. +..+++|+.|+++++..+..+|. +...  ++|+.|++.+|..+..+|.. ..+++|+.|++++|..++
T Consensus       620 ~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l--~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~  695 (1153)
T PLN03210        620 GS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMA--TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE  695 (1153)
T ss_pred             Cc-cccccccccccCCCCCEEECCCCCCcCcCCc-cccC--CcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC
Confidence            65 4555543 55566666666666655555553 2222  56666666666666555544 455666666666666665


Q ss_pred             ccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcC
Q 011033          163 TLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLD  242 (495)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  242 (495)
                      .+  |..+            ..++|+.|++++|..++.+             +  ..+++|+.|++.++. +..+|..+ 
T Consensus       696 ~L--p~~i------------~l~sL~~L~Lsgc~~L~~~-------------p--~~~~nL~~L~L~~n~-i~~lP~~~-  744 (1153)
T PLN03210        696 IL--PTGI------------NLKSLYRLNLSGCSRLKSF-------------P--DISTNISWLDLDETA-IEEFPSNL-  744 (1153)
T ss_pred             cc--CCcC------------CCCCCCEEeCCCCCCcccc-------------c--cccCCcCeeecCCCc-cccccccc-
Confidence            55  4322            1345666666666555443             1  122456666666444 33344332 


Q ss_pred             CCCCCcEEeeeCCCCC------Ccc-cccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccC
Q 011033          243 NNTSLETINISGCENL------KIL-PSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHN  315 (495)
Q Consensus       243 ~~~~L~~L~l~~~~~~------~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  315 (495)
                      .+++|+.|.+.++...      ..+ +......++|+.|++++|+.+..+|..+..+++|+.|++++|..++.+|... .
T Consensus       745 ~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~  823 (1153)
T PLN03210        745 RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N  823 (1153)
T ss_pred             cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C
Confidence            3455555555442210      000 1111223456666666665555555555555666666666665555555443 4


Q ss_pred             CCCcceeEecc--ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhcccccc
Q 011033          316 LTSLQQLTIGG--ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTA  393 (495)
Q Consensus       316 l~~L~~L~l~~--~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  393 (495)
                      +++|+.|++++  .+..+|.  .+.+|++|++++|. +. .++.   .+..+++|+.|++++| ..+..++...      
T Consensus       824 L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls~n~-i~-~iP~---si~~l~~L~~L~L~~C-~~L~~l~~~~------  889 (1153)
T PLN03210        824 LESLESLDLSGCSRLRTFPD--ISTNISDLNLSRTG-IE-EVPW---WIEKFSNLSFLDMNGC-NNLQRVSLNI------  889 (1153)
T ss_pred             ccccCEEECCCCCccccccc--cccccCEeECCCCC-Cc-cChH---HHhcCCCCCEEECCCC-CCcCccCccc------
Confidence            55666666655  4444432  23456666666654 22 1222   3555666666666665 3455554433      


Q ss_pred             CCCCCCCceeeeccccccccc
Q 011033          394 LPLPASLTSLRIVDFPNLERL  414 (495)
Q Consensus       394 ~~~~~~L~~L~l~~~~~l~~l  414 (495)
                       ..+++|+.+++++|.+++.+
T Consensus       890 -~~L~~L~~L~l~~C~~L~~~  909 (1153)
T PLN03210        890 -SKLKHLETVDFSDCGALTEA  909 (1153)
T ss_pred             -ccccCCCeeecCCCcccccc
Confidence             13455666666666665543

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.89  E-value=4.5e-26  Score=217.80  Aligned_cols=365  Identities=17%  Similarity=0.232  Sum_probs=246.2

Q ss_pred             ccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCC
Q 011033           17 DICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVA   96 (495)
Q Consensus        17 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~   96 (495)
                      -++..|-+++++ +.+   ..+.||....++    .+++-|.|.. ..+..+|..++.+.+|++|.+++|...+-.+.+.
T Consensus         5 VLpFVrGvDfsg-NDF---sg~~FP~~v~qM----t~~~WLkLnr-t~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs   75 (1255)
T KOG0444|consen    5 VLPFVRGVDFSG-NDF---SGDRFPHDVEQM----TQMTWLKLNR-TKLEQVPEELSRLQKLEHLSMAHNQLISVHGELS   75 (1255)
T ss_pred             ccceeecccccC-CcC---CCCcCchhHHHh----hheeEEEech-hhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhc
Confidence            356677778887 333   233455568888    8888888887 4778888888888888888888874333334477


Q ss_pred             CCCCCcEEEEeCCC-CCCccccccccCCCCCccEEecccCccccccccc-cCCCCccEEEeccCCCccccccccccccCC
Q 011033           97 LPSKLKIIEIEGCD-ALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV-QLPRSLKRLDILSCDNIRTLTVEEGIQSSS  174 (495)
Q Consensus        97 ~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  174 (495)
                      .++.|+++.+.+|. .-..+|.+++.+  ..|..|++++ +.++..|.. ....++-.|++++ +++..+  |..+.   
T Consensus        76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l--~dLt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~-N~IetI--Pn~lf---  146 (1255)
T KOG0444|consen   76 DLPRLRSVIVRDNNLKNSGIPTDIFRL--KDLTILDLSH-NQLREVPTNLEYAKNSIVLNLSY-NNIETI--PNSLF---  146 (1255)
T ss_pred             cchhhHHHhhhccccccCCCCchhccc--ccceeeecch-hhhhhcchhhhhhcCcEEEEccc-CccccC--CchHH---
Confidence            78888888888766 334578888777  7788888888 456666654 4455666677776 355555  43220   


Q ss_pred             CCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeC
Q 011033          175 SSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISG  254 (495)
Q Consensus       175 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  254 (495)
                                           -++                      ..|-.|+++ +..++.+|+.+..+.+|++|.+++
T Consensus       147 ---------------------inL----------------------tDLLfLDLS-~NrLe~LPPQ~RRL~~LqtL~Ls~  182 (1255)
T KOG0444|consen  147 ---------------------INL----------------------TDLLFLDLS-NNRLEMLPPQIRRLSMLQTLKLSN  182 (1255)
T ss_pred             ---------------------Hhh----------------------HhHhhhccc-cchhhhcCHHHHHHhhhhhhhcCC
Confidence                                 111                      234455666 344566666677777777777777


Q ss_pred             CCCCCcc-cccCCCCCCccEEEeeCCC-CccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccc
Q 011033          255 CENLKIL-PSGLHNLGQLQEIEIWECE-NLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSL  331 (495)
Q Consensus       255 ~~~~~~l-~~~~~~l~~L~~L~l~~~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~  331 (495)
                      |. +..+ -.-+..+++|++|.+++.. .+..+|..+..+.+|..+|++.| .+..+|+.+..+++|+.|++++ .++.+
T Consensus       183 NP-L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~iteL  260 (1255)
T KOG0444|consen  183 NP-LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITEL  260 (1255)
T ss_pred             Ch-hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCceeee
Confidence            53 2111 1223345566666666542 24466766666677777777765 4666777777777788888777 66665


Q ss_pred             cCC-CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccc
Q 011033          332 EED-GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPN  410 (495)
Q Consensus       332 ~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  410 (495)
                      ... +....|+.|+++.|+. + ..+.   .+.+++.|+.|.+.+|...++.+|...+       .+.+|+++...+ ++
T Consensus       261 ~~~~~~W~~lEtLNlSrNQL-t-~LP~---avcKL~kL~kLy~n~NkL~FeGiPSGIG-------KL~~Levf~aan-N~  327 (1255)
T KOG0444|consen  261 NMTEGEWENLETLNLSRNQL-T-VLPD---AVCKLTKLTKLYANNNKLTFEGIPSGIG-------KLIQLEVFHAAN-NK  327 (1255)
T ss_pred             eccHHHHhhhhhhccccchh-c-cchH---HHhhhHHHHHHHhccCcccccCCccchh-------hhhhhHHHHhhc-cc
Confidence            443 5567788888888762 2 3333   5677788888888887666777777664       566778887777 78


Q ss_pred             ccccccccccCCCCCeEeccCCCCCCCCCCC-CCccccceeeccCCchhH
Q 011033          411 LERLSSSIVDLQNLTHLNLVDCPKLKYFPEK-GLPSSLLQLSIYRCPLME  459 (495)
Q Consensus       411 l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~  459 (495)
                      ++-+|.++..|..|+.|.++. +.+-.+|+. -+++.|++|+++.+|++.
T Consensus       328 LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  328 LELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLV  376 (1255)
T ss_pred             cccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCcc
Confidence            888888888888888888887 457777775 347888888888887663

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.88  E-value=4.1e-25  Score=220.28  Aligned_cols=427  Identities=20%  Similarity=0.251  Sum_probs=265.8

Q ss_pred             hcCccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCC
Q 011033           10 SHNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSL   89 (495)
Q Consensus        10 ~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l   89 (495)
                      .+.++.++...|+.|++++ +.+...|.     .+..+    .+|+.|.++.| .+..+|....++.+|++|.|.+| .+
T Consensus        36 ~pl~~~~~~v~L~~l~lsn-n~~~~fp~-----~it~l----~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~~n-~l  103 (1081)
T KOG0618|consen   36 RPLEFVEKRVKLKSLDLSN-NQISSFPI-----QITLL----SHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLKNN-RL  103 (1081)
T ss_pred             CchHHhhheeeeEEeeccc-cccccCCc-----hhhhH----HHHhhcccchh-hHhhCchhhhhhhcchhheeccc-hh
Confidence            3456666666799999999 66766544     58888    99999999997 77899988999999999999886 78


Q ss_pred             CCCCC-CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCcccccccccc-----------------CCCCcc
Q 011033           90 VSFPE-VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQ-----------------LPRSLK  151 (495)
Q Consensus        90 ~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-----------------~~~~L~  151 (495)
                      ..+|. +..+.+|++|+++.|. +..+|.-+...  ..++.+..+++-++..++...                 ....++
T Consensus       104 ~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~i~~l--t~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~  180 (1081)
T KOG0618|consen  104 QSLPASISELKNLQYLDLSFNH-FGPIPLVIEVL--TAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLT  180 (1081)
T ss_pred             hcCchhHHhhhcccccccchhc-cCCCchhHHhh--hHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhh
Confidence            88885 8889999999999987 56666554433  444555555432221111110                 001122


Q ss_pred             E-EEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeec
Q 011033          152 R-LDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWY  230 (495)
Q Consensus       152 ~-L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  230 (495)
                      + +++.++. +...+....     ......++....+..+.+.+ ++++.+...-....   .......+.+|+.++++.
T Consensus       181 ~~ldLr~N~-~~~~dls~~-----~~l~~l~c~rn~ls~l~~~g-~~l~~L~a~~n~l~---~~~~~p~p~nl~~~dis~  250 (1081)
T KOG0618|consen  181 HQLDLRYNE-MEVLDLSNL-----ANLEVLHCERNQLSELEISG-PSLTALYADHNPLT---TLDVHPVPLNLQYLDISH  250 (1081)
T ss_pred             eeeecccch-hhhhhhhhc-----cchhhhhhhhcccceEEecC-cchheeeeccCcce---eeccccccccceeeecch
Confidence            2 3333321 111100000     00011111222333333333 33333311110000   012334456788888885


Q ss_pred             CCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCcccccccc
Q 011033          231 CPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALP  310 (495)
Q Consensus       231 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~  310 (495)
                      +. +..+|.|+..+.+|+.++..+ +.+..+|..+....+|+.|.+.+| .++.+|+...+..+|++|++..|. +.++|
T Consensus       251 n~-l~~lp~wi~~~~nle~l~~n~-N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~-L~~lp  326 (1081)
T KOG0618|consen  251 NN-LSNLPEWIGACANLEALNANH-NRLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNN-LPSLP  326 (1081)
T ss_pred             hh-hhcchHHHHhcccceEecccc-hhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhcc-ccccc
Confidence            54 445668888888888888877 445677777778888888888887 778888877778889999998874 66666


Q ss_pred             cccc-CCC-CcceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchh
Q 011033          311 KGLH-NLT-SLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPL  385 (495)
Q Consensus       311 ~~l~-~l~-~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  385 (495)
                      +.+. ... +|+.++.+. .+...+..  ...+.|+.|++.+|..-++.++    .+.++++|+.|++++|  .+..||+
T Consensus       327 ~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p----~l~~~~hLKVLhLsyN--rL~~fpa  400 (1081)
T KOG0618|consen  327 DNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP----VLVNFKHLKVLHLSYN--RLNSFPA  400 (1081)
T ss_pred             hHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh----hhccccceeeeeeccc--ccccCCH
Confidence            6332 222 356666655 55555543  3467888888888885444444    4888889999999998  8888888


Q ss_pred             hhccccccCCCCCCCceeeecccccccccccc----------------------cccCCCCCeEeccCCCCCCCCCCC-C
Q 011033          386 EDKRLGTALPLPASLTSLRIVDFPNLERLSSS----------------------IVDLQNLTHLNLVDCPKLKYFPEK-G  442 (495)
Q Consensus       386 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~----------------------~~~~~~L~~L~l~~c~~l~~l~~~-~  442 (495)
                      ..      +..+..|+.|+|++ ++++.+|..                      +..++.|+.+|++. ++++.+... .
T Consensus       401 s~------~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~  472 (1081)
T KOG0618|consen  401 SK------LRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSC-NNLSEVTLPEA  472 (1081)
T ss_pred             HH------HhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEeccc-chhhhhhhhhh
Confidence            65      23556788888888 777766543                      44456777777776 456664332 2


Q ss_pred             Cc-cccceeeccCCchhHHhhhcCCCeeeecceEEeccC
Q 011033          443 LP-SSLLQLSIYRCPLMEEKCRKDGGLLTHIPSVQIDLN  480 (495)
Q Consensus       443 ~~-~~L~~L~l~~c~~l~~~~~~~~~~i~~~~~~~i~~~  480 (495)
                      .+ ++|++|+++|++++.-...... -.+++..++++-+
T Consensus       473 ~p~p~LkyLdlSGN~~l~~d~~~l~-~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  473 LPSPNLKYLDLSGNTRLVFDHKTLK-VLKSLSQMDITLN  510 (1081)
T ss_pred             CCCcccceeeccCCcccccchhhhH-HhhhhhheecccC
Confidence            34 7888888888875422222111 2455555555554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.88  E-value=5e-25  Score=210.70  Aligned_cols=345  Identities=21%  Similarity=0.310  Sum_probs=271.5

Q ss_pred             cCccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCC
Q 011033           11 HNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLV   90 (495)
Q Consensus        11 ~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~   90 (495)
                      +++....|+.++.|.+.+ .++..+|++     ++++    .+|++|.+++| .+.++-..+..++.|+.+.++.| .+.
T Consensus        24 FP~~v~qMt~~~WLkLnr-t~L~~vPeE-----L~~l----qkLEHLs~~HN-~L~~vhGELs~Lp~LRsv~~R~N-~LK   91 (1255)
T KOG0444|consen   24 FPHDVEQMTQMTWLKLNR-TKLEQVPEE-----LSRL----QKLEHLSMAHN-QLISVHGELSDLPRLRSVIVRDN-NLK   91 (1255)
T ss_pred             CchhHHHhhheeEEEech-hhhhhChHH-----HHHH----hhhhhhhhhhh-hhHhhhhhhccchhhHHHhhhcc-ccc
Confidence            344556788999999999 789999997     9999    99999999998 55666666888999999999998 443


Q ss_pred             --CCCC-CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc--cCCCCccEEEeccCCCccccc
Q 011033           91 --SFPE-VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLT  165 (495)
Q Consensus        91 --~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~  165 (495)
                        .+|. +-.+..|..|++|+|. +..+|..+-..  +++..|++++ +++..+|..  .+++.|-.|++++ +.++.+ 
T Consensus        92 nsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~A--Kn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~-NrLe~L-  165 (1255)
T KOG0444|consen   92 NSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYA--KNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSN-NRLEML-  165 (1255)
T ss_pred             cCCCCchhcccccceeeecchhh-hhhcchhhhhh--cCcEEEEccc-CccccCCchHHHhhHhHhhhcccc-chhhhc-
Confidence              5565 8889999999999987 88999887666  8899999998 568888876  6677888889988 577766 


Q ss_pred             cccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCC--CCccEEEeecCCC-chhhhhhcC
Q 011033          166 VEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLP--PSLKSLFVWYCPK-LESIAERLD  242 (495)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~-~~~~~~~~~  242 (495)
                       |..+           .....|++|.+++. -+..+             ....+|  ++|+.|.+++... +..+|.++.
T Consensus       166 -PPQ~-----------RRL~~LqtL~Ls~N-PL~hf-------------QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld  219 (1255)
T KOG0444|consen  166 -PPQI-----------RRLSMLQTLKLSNN-PLNHF-------------QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD  219 (1255)
T ss_pred             -CHHH-----------HHHhhhhhhhcCCC-hhhHH-------------HHhcCccchhhhhhhcccccchhhcCCCchh
Confidence             5433           22445888888873 33333             111121  5677888876544 457888999


Q ss_pred             CCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCccee
Q 011033          243 NNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQL  322 (495)
Q Consensus       243 ~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  322 (495)
                      .+.+|..++++. +.+..+|+.+.++++|+.|++++| .++.+........+|++|+++.|+ ++.+|..+..+++|++|
T Consensus       220 ~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kL  296 (1255)
T KOG0444|consen  220 DLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKL  296 (1255)
T ss_pred             hhhhhhhccccc-cCCCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHH
Confidence            999999999987 668888999999999999999998 777777665666689999999985 88899999999999999


Q ss_pred             Eecc---ccccccCC-CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCC
Q 011033          323 TIGG---ELPSLEED-GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPA  398 (495)
Q Consensus       323 ~l~~---~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  398 (495)
                      .+.+   ....+|.+ +....|+.+..++|.  -...++   ++..|..|+.|.+++|  .+..+|...       .+++
T Consensus       297 y~n~NkL~FeGiPSGIGKL~~Levf~aanN~--LElVPE---glcRC~kL~kL~L~~N--rLiTLPeaI-------HlL~  362 (1255)
T KOG0444|consen  297 YANNNKLTFEGIPSGIGKLIQLEVFHAANNK--LELVPE---GLCRCVKLQKLKLDHN--RLITLPEAI-------HLLP  362 (1255)
T ss_pred             HhccCcccccCCccchhhhhhhHHHHhhccc--cccCch---hhhhhHHHHHhccccc--ceeechhhh-------hhcC
Confidence            8877   55666665 667788888888775  224444   7888899999999887  888888866       5778


Q ss_pred             CCceeeeccccccccccc
Q 011033          399 SLTSLRIVDFPNLERLSS  416 (495)
Q Consensus       399 ~L~~L~l~~~~~l~~l~~  416 (495)
                      .|++||+.+++++..-|.
T Consensus       363 ~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  363 DLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             CcceeeccCCcCccCCCC
Confidence            899999998888876664

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.86  E-value=8.2e-25  Score=198.99  Aligned_cols=236  Identities=25%  Similarity=0.233  Sum_probs=164.7

Q ss_pred             CccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCC
Q 011033           12 NELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVS   91 (495)
Q Consensus        12 ~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~   91 (495)
                      .+.+.++.-|.+|++++ +++..+|+.     ++.+    ..++.|++++| .+..+|..++++.+|++|+.++|...+-
T Consensus        61 ~~dl~nL~~l~vl~~~~-n~l~~lp~a-----ig~l----~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n~~~el  129 (565)
T KOG0472|consen   61 REDLKNLACLTVLNVHD-NKLSQLPAA-----IGEL----EALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSNELKEL  129 (565)
T ss_pred             cHhhhcccceeEEEecc-chhhhCCHH-----HHHH----HHHHHhhcccc-hHhhccHHHhhhhhhhhhhccccceeec
Confidence            34556777888999999 678888775     8888    88999999997 6688888888999999999998744443


Q ss_pred             CCCCCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc-cCCCCccEEEeccCCCcccccccccc
Q 011033           92 FPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV-QLPRSLKRLDILSCDNIRTLTVEEGI  170 (495)
Q Consensus        92 l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~  170 (495)
                      .+.++.+..|+.++..+|. +..+|++++..  .+|..+++.++ +++..+.. .....|++++... +.++.+  |..+
T Consensus       130 ~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~--~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~-N~L~tl--P~~l  202 (565)
T KOG0472|consen  130 PDSIGRLLDLEDLDATNNQ-ISSLPEDMVNL--SKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNS-NLLETL--PPEL  202 (565)
T ss_pred             CchHHHHhhhhhhhccccc-cccCchHHHHH--HHHHHhhcccc-chhhCCHHHHHHHHHHhcccch-hhhhcC--Chhh
Confidence            3448888888888888876 67788877766  67778888774 45554443 4466777777655 355555  5554


Q ss_pred             ccCCCCccCcccCccccceeee-----------cCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhh
Q 011033          171 QSSSSSSSNRRYTSSLLEKLEI-----------RDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAE  239 (495)
Q Consensus       171 ~~~~~~~~~~~~~~~~L~~L~l-----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  239 (495)
                      +.           +.+++-|++           .+|+.+..++.+......++. ....-.+++..|+++.| .+..+|.
T Consensus       203 g~-----------l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpa-e~~~~L~~l~vLDLRdN-klke~Pd  269 (565)
T KOG0472|consen  203 GG-----------LESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPA-EHLKHLNSLLVLDLRDN-KLKEVPD  269 (565)
T ss_pred             cc-----------hhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHH-HHhcccccceeeecccc-ccccCch
Confidence            32           222333332           334334433333333322222 11222378999999955 4667888


Q ss_pred             hcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCC
Q 011033          240 RLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECE  280 (495)
Q Consensus       240 ~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~  280 (495)
                      .+.-+++|+.|++++ +.+..+|..++++ .|+.|.+.+|+
T Consensus       270 e~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  270 EICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             HHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCc
Confidence            888999999999998 5688899999999 99999999987

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.84  E-value=2.6e-24  Score=195.76  Aligned_cols=258  Identities=22%  Similarity=0.348  Sum_probs=191.0

Q ss_pred             cccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC-CCCC
Q 011033           20 SLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE-VALP   98 (495)
Q Consensus        20 ~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~   98 (495)
                      .|+.+.+++ +.++.+.++     +.++    ..|.+|++++| .+..+|++++.+.+++.|++++| ++..+|. ++..
T Consensus        46 ~l~~lils~-N~l~~l~~d-----l~nL----~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~  113 (565)
T KOG0472|consen   46 DLQKLILSH-NDLEVLRED-----LKNL----ACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSL  113 (565)
T ss_pred             chhhhhhcc-CchhhccHh-----hhcc----cceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhh
Confidence            477888888 677777775     8888    88999999997 66788888999999999999997 6777776 8888


Q ss_pred             CCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc-cCCCCccEEEeccCCCccccccccccccCCCCc
Q 011033           99 SKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV-QLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSS  177 (495)
Q Consensus        99 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  177 (495)
                      .+|+.++.+.+. +..++++++..  ..|+.++..++ .+...|.. ..+.++..+.+.+ .+++.+  +...       
T Consensus       114 ~~l~~l~~s~n~-~~el~~~i~~~--~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~-n~l~~l--~~~~-------  179 (565)
T KOG0472|consen  114 ISLVKLDCSSNE-LKELPDSIGRL--LDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEG-NKLKAL--PENH-------  179 (565)
T ss_pred             hhhhhhhccccc-eeecCchHHHH--hhhhhhhcccc-ccccCchHHHHHHHHHHhhccc-cchhhC--CHHH-------
Confidence            899999999877 77788888766  67888888774 46665554 6677788888777 355555  3322       


Q ss_pred             cCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCC
Q 011033          178 SNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCEN  257 (495)
Q Consensus       178 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  257 (495)
                          ..+..++.+++.. +-++.+      |.     ..+.+ .+|+.|++.+|. +..+| .|.++..|++++++. +.
T Consensus       180 ----i~m~~L~~ld~~~-N~L~tl------P~-----~lg~l-~~L~~LyL~~Nk-i~~lP-ef~gcs~L~Elh~g~-N~  239 (565)
T KOG0472|consen  180 ----IAMKRLKHLDCNS-NLLETL------PP-----ELGGL-ESLELLYLRRNK-IRFLP-EFPGCSLLKELHVGE-NQ  239 (565)
T ss_pred             ----HHHHHHHhcccch-hhhhcC------Ch-----hhcch-hhhHHHHhhhcc-cccCC-CCCccHHHHHHHhcc-cH
Confidence                2255677777654 334443      11     11222 567777777555 34455 588889999999877 56


Q ss_pred             CCcccccCC-CCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc
Q 011033          258 LKILPSGLH-NLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG  326 (495)
Q Consensus       258 ~~~l~~~~~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  326 (495)
                      ++-+|+... .++++.+||+..| .+++.|....-+++|+.||+++|. ++.+|..++++ .|+.|.+.+
T Consensus       240 i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leG  306 (565)
T KOG0472|consen  240 IEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEG  306 (565)
T ss_pred             HHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcC
Confidence            777776655 7899999999998 888999888888889999999874 78888888888 788886554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.78  E-value=4.5e-21  Score=191.76  Aligned_cols=368  Identities=18%  Similarity=0.210  Sum_probs=231.1

Q ss_pred             cccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCC
Q 011033           14 LLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFP   93 (495)
Q Consensus        14 ~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~   93 (495)
                      .+....+|+.|+++. +.+..+|..     +.++    .+|++|.|.+| .+..+|..+..+++|++|++++| .+..+|
T Consensus        63 ~it~l~~L~~ln~s~-n~i~~vp~s-----~~~~----~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS~N-~f~~~P  130 (1081)
T KOG0618|consen   63 QITLLSHLRQLNLSR-NYIRSVPSS-----CSNM----RNLQYLNLKNN-RLQSLPASISELKNLQYLDLSFN-HFGPIP  130 (1081)
T ss_pred             hhhhHHHHhhcccch-hhHhhCchh-----hhhh----hcchhheeccc-hhhcCchhHHhhhcccccccchh-ccCCCc
Confidence            345566888999988 778887764     7788    89999999886 77888888888999999999987 566666


Q ss_pred             C-CCCCCCCcEEEEeCC-------------------CCCCccccccccCCCCCccE-EecccCccccccccccCCCCccE
Q 011033           94 E-VALPSKLKIIEIEGC-------------------DALKSLPEAWMCDTNSSLET-LYIEHCRTLTYLAGVQLPRSLKR  152 (495)
Q Consensus        94 ~-~~~~~~L~~L~l~~~-------------------~~~~~~~~~~~~~~~~~L~~-L~l~~~~~l~~~~~~~~~~~L~~  152 (495)
                      . +..+..++.+..++|                   .....++.++.     .+++ |++.++. ++ ..+...+++|+.
T Consensus       131 l~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~-----~l~~~ldLr~N~-~~-~~dls~~~~l~~  203 (1081)
T KOG0618|consen  131 LVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIY-----NLTHQLDLRYNE-ME-VLDLSNLANLEV  203 (1081)
T ss_pred             hhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchh-----hhheeeecccch-hh-hhhhhhccchhh
Confidence            4 455555555555554                   22222333322     2333 6666543 22 222223333333


Q ss_pred             EEeccCCCcccccccccc----ccCCCC--ccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEE
Q 011033          153 LDILSCDNIRTLTVEEGI----QSSSSS--SSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSL  226 (495)
Q Consensus       153 L~l~~~~~l~~~~~~~~~----~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L  226 (495)
                      +.... ..+..+.+.+..    ..+.++  ......-..+++.++++. ++++.+      |      .+..-.++|+.+
T Consensus       204 l~c~r-n~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~-n~l~~l------p------~wi~~~~nle~l  269 (1081)
T KOG0618|consen  204 LHCER-NQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISH-NNLSNL------P------EWIGACANLEAL  269 (1081)
T ss_pred             hhhhh-cccceEEecCcchheeeeccCcceeeccccccccceeeecch-hhhhcc------h------HHHHhcccceEe
Confidence            33222 122222110000    000000  000001122455555544 233222      1      111123678888


Q ss_pred             EeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCC------------------
Q 011033          227 FVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEG------------------  288 (495)
Q Consensus       227 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~------------------  288 (495)
                      +..+|.. ..+|..+....+|+.|.+.. +.+..+|.....+++|++|++..| .+..+|..                  
T Consensus       270 ~~n~N~l-~~lp~ri~~~~~L~~l~~~~-nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~  346 (1081)
T KOG0618|consen  270 NANHNRL-VALPLRISRITSLVSLSAAY-NELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNK  346 (1081)
T ss_pred             cccchhH-HhhHHHHhhhhhHHHHHhhh-hhhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhcc
Confidence            8886665 66777777788888888877 456777777777888888888877 44444321                  


Q ss_pred             --------CCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhc
Q 011033          289 --------GLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIE  357 (495)
Q Consensus       289 --------~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~  357 (495)
                              -...+.|+.|++.+|..-...-+.+.++++|+.|+|++ .+..||..  ..++.|++|+++||. ++... .
T Consensus       347 l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp-~  424 (1081)
T KOG0618|consen  347 LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLP-D  424 (1081)
T ss_pred             ccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhh-H
Confidence                    11223566677777665444444678889999999999 88888876  456789999999998 33232 3


Q ss_pred             ccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccc--ccccccCCCCCeEeccCCCC
Q 011033          358 RGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERL--SSSIVDLQNLTHLNLVDCPK  434 (495)
Q Consensus       358 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~~~~L~~L~l~~c~~  434 (495)
                         .+.+++.|+.|...+|  .+..+|...        .++.|+.+|++. ++++.+  +..... ++|++||++|+..
T Consensus       425 ---tva~~~~L~tL~ahsN--~l~~fPe~~--------~l~qL~~lDlS~-N~L~~~~l~~~~p~-p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  425 ---TVANLGRLHTLRAHSN--QLLSFPELA--------QLPQLKVLDLSC-NNLSEVTLPEALPS-PNLKYLDLSGNTR  488 (1081)
T ss_pred             ---HHHhhhhhHHHhhcCC--ceeechhhh--------hcCcceEEeccc-chhhhhhhhhhCCC-cccceeeccCCcc
Confidence               5778888999988887  899999544        678999999998 777764  333333 8999999999875

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.62  E-value=6.5e-15  Score=152.04  Aligned_cols=253  Identities=28%  Similarity=0.387  Sum_probs=141.1

Q ss_pred             CcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccccCCCCccEEEeccCCCccccccccccccCCCCccCc
Q 011033          101 LKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNR  180 (495)
Q Consensus       101 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~  180 (495)
                      -..|+++++. +..+|..+.    ++|+.|++.+ +.++.+|.  .+++|+.|+++++ .++.+  |..           
T Consensus       203 ~~~LdLs~~~-LtsLP~~l~----~~L~~L~L~~-N~Lt~LP~--lp~~Lk~LdLs~N-~LtsL--P~l-----------  260 (788)
T PRK15387        203 NAVLNVGESG-LTTLPDCLP----AHITTLVIPD-NNLTSLPA--LPPELRTLEVSGN-QLTSL--PVL-----------  260 (788)
T ss_pred             CcEEEcCCCC-CCcCCcchh----cCCCEEEccC-CcCCCCCC--CCCCCcEEEecCC-ccCcc--cCc-----------
Confidence            4456666654 455665543    3466666665 34555554  3456666666663 45444  321           


Q ss_pred             ccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCc
Q 011033          181 RYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKI  260 (495)
Q Consensus       181 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  260 (495)
                         .++|+.|++.++ .++.+             +  .++++|+.|++.+|.. ..+|.   ..++|+.|++++| .+..
T Consensus       261 ---p~sL~~L~Ls~N-~L~~L-------------p--~lp~~L~~L~Ls~N~L-t~LP~---~p~~L~~LdLS~N-~L~~  316 (788)
T PRK15387        261 ---PPGLLELSIFSN-PLTHL-------------P--ALPSGLCKLWIFGNQL-TSLPV---LPPGLQELSVSDN-QLAS  316 (788)
T ss_pred             ---ccccceeeccCC-chhhh-------------h--hchhhcCEEECcCCcc-ccccc---cccccceeECCCC-cccc
Confidence               124555655552 33333             1  1335566666665543 33333   2356777777664 3444


Q ss_pred             ccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCCCCCCc
Q 011033          261 LPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEEDGLPTN  339 (495)
Q Consensus       261 l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~  339 (495)
                      +|..   ..+|+.|++++| .++.+|..   ..+|+.|++++|. ++.+|..   .++|+.|++++ .+..+|.  .+.+
T Consensus       317 Lp~l---p~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~N~-Ls~LP~l---p~~L~~L~Ls~N~L~~LP~--l~~~  383 (788)
T PRK15387        317 LPAL---PSELCKLWAYNN-QLTSLPTL---PSGLQELSVSDNQ-LASLPTL---PSELYKLWAYNNRLTSLPA--LPSG  383 (788)
T ss_pred             CCCC---cccccccccccC-cccccccc---ccccceEecCCCc-cCCCCCC---CcccceehhhccccccCcc--cccc
Confidence            4432   135666667665 45555531   1367777777654 4555542   24566666666 5555543  2356


Q ss_pred             cceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeecccccccccccccc
Q 011033          340 LHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIV  419 (495)
Q Consensus       340 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~  419 (495)
                      |+.|++++|. +. .++.      ..++|+.|++++|  .+..+|.          .+.+|+.|++++ +.++.+|..+.
T Consensus       384 L~~LdLs~N~-Lt-~LP~------l~s~L~~LdLS~N--~LssIP~----------l~~~L~~L~Ls~-NqLt~LP~sl~  442 (788)
T PRK15387        384 LKELIVSGNR-LT-SLPV------LPSELKELMVSGN--RLTSLPM----------LPSGLLSLSVYR-NQLTRLPESLI  442 (788)
T ss_pred             cceEEecCCc-cc-CCCC------cccCCCEEEccCC--cCCCCCc----------chhhhhhhhhcc-CcccccChHHh
Confidence            7777777765 22 1111      1246777777776  5666654          234677777777 66777777777


Q ss_pred             cCCCCCeEeccCCC
Q 011033          420 DLQNLTHLNLVDCP  433 (495)
Q Consensus       420 ~~~~L~~L~l~~c~  433 (495)
                      .+++|+.|++++|+
T Consensus       443 ~L~~L~~LdLs~N~  456 (788)
T PRK15387        443 HLSSETTVNLEGNP  456 (788)
T ss_pred             hccCCCeEECCCCC
Confidence            77777777777754

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.59  E-value=2e-14  Score=148.42  Aligned_cols=253  Identities=28%  Similarity=0.396  Sum_probs=126.7

Q ss_pred             ccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEec
Q 011033           53 RLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYI  132 (495)
Q Consensus        53 ~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l  132 (495)
                      .-..|+++++ .+..+|..+.  .+|+.|++.+| .++.+|.  .+++|++|++++|. +..+|..   .  ++|+.|++
T Consensus       202 ~~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N-~Lt~LP~--lp~~Lk~LdLs~N~-LtsLP~l---p--~sL~~L~L  269 (788)
T PRK15387        202 GNAVLNVGES-GLTTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPVL---P--PGLLELSI  269 (788)
T ss_pred             CCcEEEcCCC-CCCcCCcchh--cCCCEEEccCC-cCCCCCC--CCCCCcEEEecCCc-cCcccCc---c--cccceeec
Confidence            3556677775 4556666543  36777777765 5666663  35667777777764 5555542   1  45677777


Q ss_pred             ccCccccccccccCCCCccEEEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCccccc
Q 011033          133 EHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLE  212 (495)
Q Consensus       133 ~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  212 (495)
                      .+| .++.++.  .+.+|+.|+++++ .++.+  |..              .++|+.|++++ +.++.+           
T Consensus       270 s~N-~L~~Lp~--lp~~L~~L~Ls~N-~Lt~L--P~~--------------p~~L~~LdLS~-N~L~~L-----------  317 (788)
T PRK15387        270 FSN-PLTHLPA--LPSGLCKLWIFGN-QLTSL--PVL--------------PPGLQELSVSD-NQLASL-----------  317 (788)
T ss_pred             cCC-chhhhhh--chhhcCEEECcCC-ccccc--ccc--------------ccccceeECCC-CccccC-----------
Confidence            664 3555543  3355666666663 44433  221              12355555555 233332           


Q ss_pred             ccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCC
Q 011033          213 SLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPC  292 (495)
Q Consensus       213 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~  292 (495)
                        +  .++..|+.|.+.+|... .+|.   ...+|+.|++++ +.+..+|..   .++|+.|++++| .+..+|..   .
T Consensus       318 --p--~lp~~L~~L~Ls~N~L~-~LP~---lp~~Lq~LdLS~-N~Ls~LP~l---p~~L~~L~Ls~N-~L~~LP~l---~  381 (788)
T PRK15387        318 --P--ALPSELCKLWAYNNQLT-SLPT---LPSGLQELSVSD-NQLASLPTL---PSELYKLWAYNN-RLTSLPAL---P  381 (788)
T ss_pred             --C--CCcccccccccccCccc-cccc---cccccceEecCC-CccCCCCCC---Ccccceehhhcc-ccccCccc---c
Confidence              1  12244555555544332 2332   113566666665 334444432   235556666655 44444432   1


Q ss_pred             CCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceE
Q 011033          293 AKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHL  371 (495)
Q Consensus       293 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L  371 (495)
                      .+|+.|++++|. ++.+|..   .++|+.|++++ .+..+|.  .+.+|+.|++++|.. . .++.   .+.++++|+.|
T Consensus       382 ~~L~~LdLs~N~-Lt~LP~l---~s~L~~LdLS~N~LssIP~--l~~~L~~L~Ls~NqL-t-~LP~---sl~~L~~L~~L  450 (788)
T PRK15387        382 SGLKELIVSGNR-LTSLPVL---PSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQL-T-RLPE---SLIHLSSETTV  450 (788)
T ss_pred             cccceEEecCCc-ccCCCCc---ccCCCEEEccCCcCCCCCc--chhhhhhhhhccCcc-c-ccCh---HHhhccCCCeE
Confidence            356666666653 4444432   23455555555 4444432  233455555555442 2 1222   24444555555


Q ss_pred             Eeecc
Q 011033          372 TIEGC  376 (495)
Q Consensus       372 ~l~~~  376 (495)
                      ++++|
T Consensus       451 dLs~N  455 (788)
T PRK15387        451 NLEGN  455 (788)
T ss_pred             ECCCC
Confidence            55554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.52  E-value=4.1e-14  Score=146.97  Aligned_cols=121  Identities=25%  Similarity=0.353  Sum_probs=79.3

Q ss_pred             ccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCC
Q 011033           19 CSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALP   98 (495)
Q Consensus        19 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~   98 (495)
                      .+..+|++++ .+++.+|..     +.      ++|+.|++++| .+..+|..+.  .+|++|++++| .++.+|. ..+
T Consensus       178 ~~~~~L~L~~-~~LtsLP~~-----Ip------~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~-~l~  240 (754)
T PRK15370        178 NNKTELRLKI-LGLTTIPAC-----IP------EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSN-QLTSIPA-TLP  240 (754)
T ss_pred             cCceEEEeCC-CCcCcCCcc-----cc------cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCC-ccccCCh-hhh
Confidence            3567788877 567776653     21      66888888886 5567775443  57888888876 5666664 234


Q ss_pred             CCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccccCCCCccEEEeccCCCcccc
Q 011033           99 SKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTL  164 (495)
Q Consensus        99 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~  164 (495)
                      .+|+.|++++|. +..+|..+.    .+|+.|++++ +.++.+|.. .+++|+.|+++++ .++.+
T Consensus       241 ~~L~~L~Ls~N~-L~~LP~~l~----s~L~~L~Ls~-N~L~~LP~~-l~~sL~~L~Ls~N-~Lt~L  298 (754)
T PRK15370        241 DTIQEMELSINR-ITELPERLP----SALQSLDLFH-NKISCLPEN-LPEELRYLSVYDN-SIRTL  298 (754)
T ss_pred             ccccEEECcCCc-cCcCChhHh----CCCCEEECcC-CccCccccc-cCCCCcEEECCCC-ccccC
Confidence            568888888876 556776653    4578888876 356666553 2357777777774 45544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.47  E-value=1e-15  Score=139.96  Aligned_cols=102  Identities=19%  Similarity=0.208  Sum_probs=61.2

Q ss_pred             ccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC--CCCC
Q 011033           21 LRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--VALP   98 (495)
Q Consensus        21 L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~   98 (495)
                      -.++++.. ++|+.||++    +|+.+    ++||.|||++|.....-|..|..++.|-.|-+.+++.++++|.  ++++
T Consensus        69 tveirLdq-N~I~~iP~~----aF~~l----~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL  139 (498)
T KOG4237|consen   69 TVEIRLDQ-NQISSIPPG----AFKTL----HRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL  139 (498)
T ss_pred             ceEEEecc-CCcccCChh----hccch----hhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence            45666666 667777775    66666    7777777777644334455666677766666666556777765  6666


Q ss_pred             CCCcEEEEeCCCCCCcccc-ccccCCCCCccEEeccc
Q 011033           99 SKLKIIEIEGCDALKSLPE-AWMCDTNSSLETLYIEH  134 (495)
Q Consensus        99 ~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~  134 (495)
                      ..|+.|.+.-|. +.-+.. .+..+  ++|..|.+.+
T Consensus       140 ~slqrLllNan~-i~Cir~~al~dL--~~l~lLslyD  173 (498)
T KOG4237|consen  140 SSLQRLLLNANH-INCIRQDALRDL--PSLSLLSLYD  173 (498)
T ss_pred             HHHHHHhcChhh-hcchhHHHHHHh--hhcchhcccc
Confidence            667766666555 222222 22222  5555566555

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.45  E-value=4.9e-13  Score=139.04  Aligned_cols=220  Identities=24%  Similarity=0.363  Sum_probs=109.1

Q ss_pred             cccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEe
Q 011033           52 CRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLY  131 (495)
Q Consensus        52 ~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  131 (495)
                      .+...|+++++ .+..+|..+.  ++|+.|++++| .++.+|. ..+.+|+.|++++|. +..+|..+.    ++|+.|+
T Consensus       178 ~~~~~L~L~~~-~LtsLP~~Ip--~~L~~L~Ls~N-~LtsLP~-~l~~nL~~L~Ls~N~-LtsLP~~l~----~~L~~L~  247 (754)
T PRK15370        178 NNKTELRLKIL-GLTTIPACIP--EQITTLILDNN-ELKSLPE-NLQGNIKTLYANSNQ-LTSIPATLP----DTIQEME  247 (754)
T ss_pred             cCceEEEeCCC-CcCcCCcccc--cCCcEEEecCC-CCCcCCh-hhccCCCEEECCCCc-cccCChhhh----ccccEEE
Confidence            44666777765 4556665432  46777777776 5666664 123467777777665 556665443    3577777


Q ss_pred             cccCccccccccccCCCCccEEEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccc
Q 011033          132 IEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATL  211 (495)
Q Consensus       132 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  211 (495)
                      +++| .+..+|.. .+.+|+.|++++ +.++.+  |..+             .++|+.|+++++ .++.+          
T Consensus       248 Ls~N-~L~~LP~~-l~s~L~~L~Ls~-N~L~~L--P~~l-------------~~sL~~L~Ls~N-~Lt~L----------  298 (754)
T PRK15370        248 LSIN-RITELPER-LPSALQSLDLFH-NKISCL--PENL-------------PEELRYLSVYDN-SIRTL----------  298 (754)
T ss_pred             CcCC-ccCcCChh-HhCCCCEEECcC-CccCcc--cccc-------------CCCCcEEECCCC-ccccC----------
Confidence            7764 34455543 234666666664 345444  4333             124666666553 33332          


Q ss_pred             cccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCC
Q 011033          212 ESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLP  291 (495)
Q Consensus       212 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~  291 (495)
                         + ..++++|+.|++++|... .+|..+  .++|+.|++++| .+..+|..+.  ++|+.|++++| .+..+|..+. 
T Consensus       299 ---P-~~lp~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N-~Lt~LP~~l~--~sL~~L~Ls~N-~L~~LP~~lp-  366 (754)
T PRK15370        299 ---P-AHLPSGITHLNVQSNSLT-ALPETL--PPGLKTLEAGEN-ALTSLPASLP--PELQVLDVSKN-QITVLPETLP-  366 (754)
T ss_pred             ---c-ccchhhHHHHHhcCCccc-cCCccc--cccceeccccCC-ccccCChhhc--CcccEEECCCC-CCCcCChhhc-
Confidence               1 112234555555544332 233222  245555555553 2333443332  45555555555 3444443221 


Q ss_pred             CCCCcEEEecCccccccccccccCCCCcceeEecc
Q 011033          292 CAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG  326 (495)
Q Consensus       292 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  326 (495)
                       ++|+.|++++|. +..+|..+.  .+|+.|++++
T Consensus       367 -~~L~~LdLs~N~-Lt~LP~~l~--~sL~~LdLs~  397 (754)
T PRK15370        367 -PTITTLDVSRNA-LTNLPENLP--AALQIMQASR  397 (754)
T ss_pred             -CCcCEEECCCCc-CCCCCHhHH--HHHHHHhhcc
Confidence             355555555553 334443322  2344444444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.35  E-value=1.7e-14  Score=132.08  Aligned_cols=391  Identities=14%  Similarity=0.138  Sum_probs=209.8

Q ss_pred             cchhHHhhcCccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccc-cccCCCCccEE
Q 011033            3 EQTYIWKSHNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQ-SSLSLSSLREI   81 (495)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~-~~~~l~~L~~L   81 (495)
                      ++..|...++++|+.++.||.|++++ +.|+.|.++    +|.++    ++|..|-+.+++.+.++|. .|+.+..|+.|
T Consensus        75 dqN~I~~iP~~aF~~l~~LRrLdLS~-N~Is~I~p~----AF~GL----~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   75 DQNQISSIPPGAFKTLHRLRRLDLSK-NNISFIAPD----AFKGL----ASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             ccCCcccCChhhccchhhhceecccc-cchhhcChH----hhhhh----HhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            35567788899999999999999999 899999886    89999    9999999999779999996 48899999999


Q ss_pred             EEeCCCCCCCCCC--CCCCCCCcEEEEeCCCCCCcccc-ccccCCCCCccEEecccCccccccccccCCCCccEE-----
Q 011033           82 EIYKCSSLVSFPE--VALPSKLKIIEIEGCDALKSLPE-AWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRL-----  153 (495)
Q Consensus        82 ~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L-----  153 (495)
                      .+.-| .+..+..  +..+++|..|.+.+|. +..++. .+...  .+++.+.+..++.+..    .+++.+...     
T Consensus       146 llNan-~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l--~~i~tlhlA~np~icd----CnL~wla~~~a~~~  217 (498)
T KOG4237|consen  146 LLNAN-HINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGL--AAIKTLHLAQNPFICD----CNLPWLADDLAMNP  217 (498)
T ss_pred             hcChh-hhcchhHHHHHHhhhcchhcccchh-hhhhccccccch--hccchHhhhcCccccc----cccchhhhHHhhch
Confidence            99877 6666654  7889999999999976 666665 33223  6677777766542211    111111110     


Q ss_pred             -EeccCCCccccccccccccCCCCccCcccCccccceeeec--CCC--CCcccccCCCCcccccccccCCCCCCccEEEe
Q 011033          154 -DILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIR--DCP--SLTCIFSQNELPATLESLEVGNLPPSLKSLFV  228 (495)
Q Consensus       154 -~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  228 (495)
                       ..++.....    +..+.            ...+..++..  .|.  ++..-..+.+.++.+.+..--.-.++|+.|++
T Consensus       218 ietsgarc~~----p~rl~------------~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnl  281 (498)
T KOG4237|consen  218 IETSGARCVS----PYRLY------------YKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNL  281 (498)
T ss_pred             hhcccceecc----hHHHH------------HHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEecc
Confidence             001100000    00000            0000000000  000  01000111222221111100111255666666


Q ss_pred             ecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcc-cccCCCCCCccEEEeeCCCCcccc-CCCCCCCCCCcEEEecCcccc
Q 011033          229 WYCPKLESIAERLDNNTSLETINISGCENLKIL-PSGLHNLGQLQEIEIWECENLVSF-PEGGLPCAKLSKLRIYGCERL  306 (495)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~  306 (495)
                      ++|...+.-+.+|.....+++|.+..| .+..+ ...|.++..|+.|++.+| .++.+ |..+....+|.+|.+-.|+..
T Consensus       282 snN~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  282 SNNKITRIEDGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             CCCccchhhhhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCC-eeEEEecccccccceeeeeehccCccc
Confidence            655555555556666666666666653 33333 234555666666666665 34433 234444455666655443211


Q ss_pred             cc-----ccccccCCCCcceeEecc-ccccccCCCCCCccceeEeeccCccch--hhhc------ccccCCCCCccceE-
Q 011033          307 EA-----LPKGLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWK--SMIE------RGRGFHRFSSLRHL-  371 (495)
Q Consensus       307 ~~-----~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~------~~~~~~~l~~L~~L-  371 (495)
                      -.     +.+|+           .+ .....|+.+.|..++.+.++....-+.  ..++      ....-..++-+.++ 
T Consensus       360 CnC~l~wl~~Wl-----------r~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVv  428 (498)
T KOG4237|consen  360 CNCRLAWLGEWL-----------RKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVV  428 (498)
T ss_pred             CccchHHHHHHH-----------hhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhH
Confidence            10     00111           01 222233444455566665554431110  0000      00011222222221 


Q ss_pred             EeeccccccccchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCCCCC--ccccce
Q 011033          372 TIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGL--PSSLLQ  449 (495)
Q Consensus       372 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~  449 (495)
                      .-++  ..+..+|..         .|..-..|++.+ +.++.+|..  .+.+| .+++++ +.+..+....+  +++|.+
T Consensus       429 RcSn--k~lk~lp~~---------iP~d~telyl~g-n~~~~vp~~--~~~~l-~~dls~-n~i~~Lsn~tf~n~tql~t  492 (498)
T KOG4237|consen  429 RCSN--KLLKLLPRG---------IPVDVTELYLDG-NAITSVPDE--LLRSL-LLDLSN-NRISSLSNYTFSNMTQLST  492 (498)
T ss_pred             hhcc--cchhhcCCC---------CCchhHHHhccc-chhcccCHH--HHhhh-hccccc-Cceehhhcccccchhhhhe
Confidence            1122  245555553         466788888988 788888865  66777 888988 55777665433  677777


Q ss_pred             eeccCC
Q 011033          450 LSIYRC  455 (495)
Q Consensus       450 L~l~~c  455 (495)
                      |.++++
T Consensus       493 lilsyn  498 (498)
T KOG4237|consen  493 LILSYN  498 (498)
T ss_pred             eEEecC
Confidence            777653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.24  E-value=6e-14  Score=113.97  Aligned_cols=182  Identities=21%  Similarity=0.307  Sum_probs=101.5

Q ss_pred             CCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCccee
Q 011033          243 NNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQL  322 (495)
Q Consensus       243 ~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  322 (495)
                      .+.+++.|.+++ +.+..+|..+..+.+|+.|++++| .++++|.....++.|+.|++.-|+ +..+|.+|+.+|.|+.|
T Consensus        31 ~~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhccc-CceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhh
Confidence            344555555555 334445555556666666666554 555555555555566666555443 34455555555555555


Q ss_pred             EeccccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCce
Q 011033          323 TIGGELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTS  402 (495)
Q Consensus       323 ~l~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  402 (495)
                      |+                     ..|..-....+.   .+..+..|+-|.+++|  .++.+|.+.+       .+++|+.
T Consensus       108 dl---------------------tynnl~e~~lpg---nff~m~tlralyl~dn--dfe~lp~dvg-------~lt~lqi  154 (264)
T KOG0617|consen  108 DL---------------------TYNNLNENSLPG---NFFYMTTLRALYLGDN--DFEILPPDVG-------KLTNLQI  154 (264)
T ss_pred             hc---------------------cccccccccCCc---chhHHHHHHHHHhcCC--CcccCChhhh-------hhcceeE
Confidence            55                     444322222222   3445556666667666  5666666553       4567777


Q ss_pred             eeecccccccccccccccCCCCCeEeccCCCCCCCCCCC----CCccccceeeccCCchhHHhh
Q 011033          403 LRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEK----GLPSSLLQLSIYRCPLMEEKC  462 (495)
Q Consensus       403 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~----~~~~~L~~L~l~~c~~l~~~~  462 (495)
                      |.+.+ +.+-++|..++.+..|++|-+++ +.++-+|.+    ....+=+++....+|.+..+.
T Consensus       155 l~lrd-ndll~lpkeig~lt~lrelhiqg-nrl~vlppel~~l~l~~~k~v~r~E~NPwv~pIa  216 (264)
T KOG0617|consen  155 LSLRD-NDLLSLPKEIGDLTRLRELHIQG-NRLTVLPPELANLDLVGNKQVMRMEENPWVNPIA  216 (264)
T ss_pred             Eeecc-CchhhCcHHHHHHHHHHHHhccc-ceeeecChhhhhhhhhhhHHHHhhhhCCCCChHH
Confidence            77777 66667777777777777777777 446665542    112233344555555554443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.23  E-value=2.4e-13  Score=125.54  Aligned_cols=136  Identities=18%  Similarity=0.285  Sum_probs=83.2

Q ss_pred             CCccEEEeecCCCchhhhh--hcCCCCCCcEEeeeCCCCCCcc--cccCCCCCCccEEEeeCCCCccc--cCCCCCCCCC
Q 011033          221 PSLKSLFVWYCPKLESIAE--RLDNNTSLETINISGCENLKIL--PSGLHNLGQLQEIEIWECENLVS--FPEGGLPCAK  294 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~l--~~~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~  294 (495)
                      ..|+.+..+++...+..+.  -..+..+|+.|.+.+|..+...  ..--.+++.|+.+++..+..+.+  +......|+.
T Consensus       294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~  373 (483)
T KOG4341|consen  294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR  373 (483)
T ss_pred             hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence            3456666666555443322  2335677777777777665443  11123567788888877744432  3344456778


Q ss_pred             CcEEEecCccccccccccccCCCCcceeEeccccccccC-CCCCCccceeEeeccCccchhhhcccccCCCCCccceEEe
Q 011033          295 LSKLRIYGCERLEALPKGLHNLTSLQQLTIGGELPSLEE-DGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTI  373 (495)
Q Consensus       295 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l  373 (495)
                      |+.+.+++|..+++.  ++..               +.. ......|+.+.+++|+.+++...+   .+..+++|+.+++
T Consensus       374 lr~lslshce~itD~--gi~~---------------l~~~~c~~~~l~~lEL~n~p~i~d~~Le---~l~~c~~Leri~l  433 (483)
T KOG4341|consen  374 LRVLSLSHCELITDE--GIRH---------------LSSSSCSLEGLEVLELDNCPLITDATLE---HLSICRNLERIEL  433 (483)
T ss_pred             hccCChhhhhhhhhh--hhhh---------------hhhccccccccceeeecCCCCchHHHHH---HHhhCcccceeee
Confidence            888888877666653  1111               111 122346777778888877777766   6888888888888


Q ss_pred             ecc
Q 011033          374 EGC  376 (495)
Q Consensus       374 ~~~  376 (495)
                      .+|
T Consensus       434 ~~~  436 (483)
T KOG4341|consen  434 IDC  436 (483)
T ss_pred             ech
Confidence            887

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.17  E-value=1.2e-12  Score=120.96  Aligned_cols=279  Identities=17%  Similarity=0.227  Sum_probs=133.0

Q ss_pred             cccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCcccc--ccccCCCCccEEEEeCCCCCCCCCC---
Q 011033           20 SLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLP--QSSLSLSSLREIEIYKCSSLVSFPE---   94 (495)
Q Consensus        20 ~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~--~~~~~l~~L~~L~l~~~~~l~~l~~---   94 (495)
                      .||+|.+++|..+.+       ..+...+..||++++|.+.+|..+++..  ..-..+++|++|++..|..+++..-   
T Consensus       139 ~lk~LSlrG~r~v~~-------sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l  211 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGD-------SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL  211 (483)
T ss_pred             ccccccccccccCCc-------chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHH
Confidence            367777777655443       2355555666777777777776554321  1233567777777777766654331   


Q ss_pred             CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccc--cc-cccCCCCccEEEeccCCCccccccccccc
Q 011033           95 VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTY--LA-GVQLPRSLKRLDILSCDNIRTLTVEEGIQ  171 (495)
Q Consensus        95 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  171 (495)
                      ...+++|++|++++|+.+..-.......+++.++.+...+|...+.  +. ......-+..+++.+|..++..++.    
T Consensus       212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~----  287 (483)
T KOG4341|consen  212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLW----  287 (483)
T ss_pred             HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHH----
Confidence            4457777777777776554422222223334455555555543221  11 1133334444555555544433111    


Q ss_pred             cCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhh--hcCCCCCCcE
Q 011033          172 SSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAE--RLDNNTSLET  249 (495)
Q Consensus       172 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~  249 (495)
                             ...+....++.++.++|.++++..     ..     ..+.-..+|+.+.+..|..+...-.  .-.+++.|+.
T Consensus       288 -------~i~~~c~~lq~l~~s~~t~~~d~~-----l~-----aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~  350 (483)
T KOG4341|consen  288 -------LIACGCHALQVLCYSSCTDITDEV-----LW-----ALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLER  350 (483)
T ss_pred             -------HHhhhhhHhhhhcccCCCCCchHH-----HH-----HHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhh
Confidence                   111223345555555555544430     00     1111124556666655554333221  1124455555


Q ss_pred             EeeeCCCCCCc--ccccCCCCCCccEEEeeCCCCcccc-----CCCCCCCCCCcEEEecCccccccc-cccccCCCCcce
Q 011033          250 INISGCENLKI--LPSGLHNLGQLQEIEIWECENLVSF-----PEGGLPCAKLSKLRIYGCERLEAL-PKGLHNLTSLQQ  321 (495)
Q Consensus       250 L~l~~~~~~~~--l~~~~~~l~~L~~L~l~~~~~l~~l-----~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~  321 (495)
                      +++.+|..+.+  +-....+++.|+++.+++|..+++-     .........++.+.+++|+.+++- -..+..+++|+.
T Consensus       351 l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Ler  430 (483)
T KOG4341|consen  351 LDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLER  430 (483)
T ss_pred             hcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccce
Confidence            55555433321  1112234556666666655444433     112223345555556665554432 124445556666


Q ss_pred             eEecc
Q 011033          322 LTIGG  326 (495)
Q Consensus       322 L~l~~  326 (495)
                      +++.+
T Consensus       431 i~l~~  435 (483)
T KOG4341|consen  431 IELID  435 (483)
T ss_pred             eeeec
Confidence            55554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.13  E-value=1.5e-12  Score=105.98  Aligned_cols=148  Identities=24%  Similarity=0.333  Sum_probs=110.6

Q ss_pred             CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEe
Q 011033          221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRI  300 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l  300 (495)
                      +.++.|.+++|. +..+|+.++.+.+|+.|++++ +.+.++|..++.++.|+.|++..| .+..+|.+++.+|.|+.||+
T Consensus        33 s~ITrLtLSHNK-l~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   33 SNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhhcccCc-eeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhc
Confidence            668889998665 556777789999999999988 678899999999999999999987 78899999999999999999


Q ss_pred             cCccccc-cccccccCCCCcceeEecc-ccccccCC-CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeecc
Q 011033          301 YGCERLE-ALPKGLHNLTSLQQLTIGG-ELPSLEED-GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGC  376 (495)
Q Consensus       301 ~~~~~~~-~~~~~l~~l~~L~~L~l~~-~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  376 (495)
                      .+|+.-+ .+|..|..+.-|+.|.+++ +...+|+. +...+|+.|.+..|..++  .+.   .++.+..|++|++.+|
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~--lpk---eig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS--LPK---EIGDLTRLRELHIQGN  183 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh--CcH---HHHHHHHHHHHhcccc
Confidence            9876544 5677777777777777777 55555554 455555555555555332  111   3455555555555555

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.13  E-value=3.6e-11  Score=127.22  Aligned_cols=107  Identities=26%  Similarity=0.292  Sum_probs=72.2

Q ss_pred             ccccccEEecccccc-cccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC-
Q 011033           17 DICSLRRLTITSCPK-LQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE-   94 (495)
Q Consensus        17 ~~~~L~~L~l~~c~~-l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-   94 (495)
                      .++.|++|-+.+... +..++.+    .|..+    |.|+.||+++|..+..+|..++.+-+||+|++++. .+..+|. 
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~----ff~~m----~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~  613 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGE----FFRSL----PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSG  613 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHH----HHhhC----cceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchH
Confidence            345677777777321 5555553    56667    77777777777777777777777777777777774 6777776 


Q ss_pred             CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEeccc
Q 011033           95 VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEH  134 (495)
Q Consensus        95 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  134 (495)
                      ++++.+|.+|++..+.....+|.....+  ++|++|.+..
T Consensus       614 l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L--~~Lr~L~l~~  651 (889)
T KOG4658|consen  614 LGNLKKLIYLNLEVTGRLESIPGILLEL--QSLRVLRLPR  651 (889)
T ss_pred             HHHHHhhheeccccccccccccchhhhc--ccccEEEeec
Confidence            7777777777777766555554443323  6777777765

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.08  E-value=3.3e-11  Score=115.81  Aligned_cols=190  Identities=18%  Similarity=0.139  Sum_probs=91.7

Q ss_pred             hhhhcCCCCCCcEEeeeCCCCCCcccccCCCC---CCccEEEeeCCCCcc----ccCCCCCCC-CCCcEEEecCccccc-
Q 011033          237 IAERLDNNTSLETINISGCENLKILPSGLHNL---GQLQEIEIWECENLV----SFPEGGLPC-AKLSKLRIYGCERLE-  307 (495)
Q Consensus       237 ~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l---~~L~~L~l~~~~~l~----~l~~~~~~~-~~L~~L~l~~~~~~~-  307 (495)
                      ++..+..+++|+.|++++|......+..+..+   ++|++|++++|....    .+...+..+ ++|+.|++++|.... 
T Consensus        73 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~  152 (319)
T cd00116          73 LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA  152 (319)
T ss_pred             HHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch
Confidence            33445556677777777654432222222222   337777777763221    111122233 567777777765331 


Q ss_pred             ---cccccccCCCCcceeEecc-cccc-----ccC-CCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccc
Q 011033          308 ---ALPKGLHNLTSLQQLTIGG-ELPS-----LEE-DGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCD  377 (495)
Q Consensus       308 ---~~~~~l~~l~~L~~L~l~~-~l~~-----~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  377 (495)
                         .++..+..+++|++|++++ .+..     ++. ....++|++|++++|.............+..+++|++|++++| 
T Consensus       153 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n-  231 (319)
T cd00116         153 SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN-  231 (319)
T ss_pred             HHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC-
Confidence               2333455556677777666 3331     111 1123467777777765322111111123556677777777776 


Q ss_pred             cccccc--hhhhccccccCCCCCCCceeeeccccccc-----ccccccccCCCCCeEeccCC
Q 011033          378 DDMVSF--PLEDKRLGTALPLPASLTSLRIVDFPNLE-----RLSSSIVDLQNLTHLNLVDC  432 (495)
Q Consensus       378 ~~~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~l~~~~~~~~~L~~L~l~~c  432 (495)
                       .+...  ..-...   .....+.|+.|++++| .++     .+...+..+++|+.+++++|
T Consensus       232 -~l~~~~~~~l~~~---~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N  288 (319)
T cd00116         232 -NLTDAGAAALASA---LLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGN  288 (319)
T ss_pred             -cCchHHHHHHHHH---HhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence             33321  110000   0001246777777764 332     23334445566777777774

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.05  E-value=3.6e-11  Score=115.50  Aligned_cols=255  Identities=21%  Similarity=0.137  Sum_probs=152.6

Q ss_pred             CCccEEEeecCCCch----hhhhhcCCCCCCcEEeeeCCCCC------CcccccCCCCCCccEEEeeCCCCccccCCCCC
Q 011033          221 PSLKSLFVWYCPKLE----SIAERLDNNTSLETINISGCENL------KILPSGLHNLGQLQEIEIWECENLVSFPEGGL  290 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~------~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~  290 (495)
                      +.|+.++++++....    .++..+...++++.++++++...      ..++..+..+++|+.|++++|......+..+.
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence            458888888776532    35556777888999999885433      11234566788999999999855433332222


Q ss_pred             CC---CCCcEEEecCccccc----cccccccCC-CCcceeEecc-cccc-----ccC-CCCCCccceeEeeccCccchhh
Q 011033          291 PC---AKLSKLRIYGCERLE----ALPKGLHNL-TSLQQLTIGG-ELPS-----LEE-DGLPTNLHSLHIWGNMEIWKSM  355 (495)
Q Consensus       291 ~~---~~L~~L~l~~~~~~~----~~~~~l~~l-~~L~~L~l~~-~l~~-----~~~-~~~~~~L~~L~l~~~~~~~~~~  355 (495)
                      .+   ++|+.|++++|....    .+...+..+ ++|+.|++++ .+..     +.. ....+.|++|++++|.......
T Consensus       103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  182 (319)
T cd00116         103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI  182 (319)
T ss_pred             HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence            22   469999999986431    222345566 8999999998 5441     111 1234689999999987443222


Q ss_pred             hcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccc-----cccc-ccCCCCCeEec
Q 011033          356 IERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERL-----SSSI-VDLQNLTHLNL  429 (495)
Q Consensus       356 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-----~~~~-~~~~~L~~L~l  429 (495)
                      ......+..+++|++|++++|  .+.....  ..+...+...++|+.|++++| .++..     ...+ ...+.|++|++
T Consensus       183 ~~l~~~l~~~~~L~~L~L~~n--~i~~~~~--~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l  257 (319)
T cd00116         183 RALAEGLKANCNLEVLDLNNN--GLTDEGA--SALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSL  257 (319)
T ss_pred             HHHHHHHHhCCCCCEEeccCC--ccChHHH--HHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEc
Confidence            221123455679999999998  4432211  111112234578999999995 44431     1111 12479999999


Q ss_pred             cCCCCCCC-----CCC-CCCccccceeeccCCchhHHhhhc----CCCeeeecceEEeccCc
Q 011033          430 VDCPKLKY-----FPE-KGLPSSLLQLSIYRCPLMEEKCRK----DGGLLTHIPSVQIDLNG  481 (495)
Q Consensus       430 ~~c~~l~~-----l~~-~~~~~~L~~L~l~~c~~l~~~~~~----~~~~i~~~~~~~i~~~~  481 (495)
                      ++|. ++.     +.. ....++|+++++++|..-.+.+..    ......++..++|.++.
T Consensus       258 ~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         258 SCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             cCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            9975 432     111 112478999999998654332111    11012455666665543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.01  E-value=4.9e-10  Score=118.78  Aligned_cols=92  Identities=23%  Similarity=0.340  Sum_probs=79.3

Q ss_pred             hhcCccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCC
Q 011033            9 KSHNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSS   88 (495)
Q Consensus         9 ~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~   88 (495)
                      ....++|..++.|++|++++|..+..+|..     ++.+    -+||+|++++. .+..+|..+++++.|.+|++..+..
T Consensus       561 ~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-----I~~L----i~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~  630 (889)
T KOG4658|consen  561 EISGEFFRSLPLLRVLDLSGNSSLSKLPSS-----IGEL----VHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGR  630 (889)
T ss_pred             hcCHHHHhhCcceEEEECCCCCccCcCChH-----Hhhh----hhhhcccccCC-CccccchHHHHHHhhheeccccccc
Confidence            444566999999999999998899998885     9999    99999999995 7789999999999999999999877


Q ss_pred             CCCCCC-CCCCCCCcEEEEeCCC
Q 011033           89 LVSFPE-VALPSKLKIIEIEGCD  110 (495)
Q Consensus        89 l~~l~~-~~~~~~L~~L~l~~~~  110 (495)
                      +..++. ...+.+|++|.+....
T Consensus       631 l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  631 LESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccccchhhhcccccEEEeeccc
Confidence            777766 4449999999988743

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=5.3e-11  Score=110.91  Aligned_cols=204  Identities=16%  Similarity=0.106  Sum_probs=119.8

Q ss_pred             CCccEEEeecCCCchhhh--hhcCCCCCCcEEeeeCCCCC--CcccccCCCCCCccEEEeeCCCCccccCC-CCCCCCCC
Q 011033          221 PSLKSLFVWYCPKLESIA--ERLDNNTSLETINISGCENL--KILPSGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKL  295 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~--~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L  295 (495)
                      .+|+.+.+.++. ....+  .....+++++.|++++|-..  ..+-.-...+|+|+.|+++.|........ ....++.|
T Consensus       121 kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l  199 (505)
T KOG3207|consen  121 KKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL  199 (505)
T ss_pred             HhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence            456777776433 32222  23456788888888875222  22233355678888888888743222222 22345678


Q ss_pred             cEEEecCccccc-cccccccCCCCcceeEecc-ccccc--cCCCCCCccceeEeeccCccchhhhcccccCCCCCccceE
Q 011033          296 SKLRIYGCERLE-ALPKGLHNLTSLQQLTIGG-ELPSL--EEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHL  371 (495)
Q Consensus       296 ~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~-~l~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L  371 (495)
                      +.|.++.|.... ++...+..+|+|+.|++.. .....  .+...++.|++|++++|..++.....   ....++.|+.|
T Consensus       200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~---~~~~l~~L~~L  276 (505)
T KOG3207|consen  200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGY---KVGTLPGLNQL  276 (505)
T ss_pred             heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccc---ccccccchhhh
Confidence            888888885322 2323455678888888876 21111  12355778899999988876644433   57888888888


Q ss_pred             EeeccccccccchhhhccccccCCCCCCCceeeeccccccccccc--ccccCCCCCeEeccC
Q 011033          372 TIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS--SIVDLQNLTHLNLVD  431 (495)
Q Consensus       372 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~  431 (495)
                      +++.|  ++.++..-.......-..+++|+.|++.. +++.+++.  .+..+++|+.|.+..
T Consensus       277 nls~t--gi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~  335 (505)
T KOG3207|consen  277 NLSST--GIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITL  335 (505)
T ss_pred             hcccc--CcchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhccc
Confidence            88888  55544331111111112345777777777 66666654  445556666666555

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.72  E-value=7.1e-09  Score=88.20  Aligned_cols=108  Identities=19%  Similarity=0.233  Sum_probs=31.8

Q ss_pred             cccccccccEEecccccccccccchhhHHHHh-hhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCC
Q 011033           14 LLQDICSLRRLTITSCPKLQSLVAEEEKDQQQ-QLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSF   92 (495)
Q Consensus        14 ~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~-~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l   92 (495)
                      .+.+...+++|++++ +.++.|..      ++ .+    .+|+.|++++| .+..++. +..+++|++|++++| .++++
T Consensus        14 ~~~n~~~~~~L~L~~-n~I~~Ie~------L~~~l----~~L~~L~Ls~N-~I~~l~~-l~~L~~L~~L~L~~N-~I~~i   79 (175)
T PF14580_consen   14 QYNNPVKLRELNLRG-NQISTIEN------LGATL----DKLEVLDLSNN-QITKLEG-LPGLPRLKTLDLSNN-RISSI   79 (175)
T ss_dssp             -----------------------S--------TT-----TT--EEE-TTS---S--TT-----TT--EEE--SS----S-
T ss_pred             ccccccccccccccc-cccccccc------hhhhh----cCCCEEECCCC-CCccccC-ccChhhhhhcccCCC-CCCcc
Confidence            344555678888888 56776533      33 34    77888888887 5566653 667788888888886 67666


Q ss_pred             CC-C-CCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCc
Q 011033           93 PE-V-ALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCR  136 (495)
Q Consensus        93 ~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  136 (495)
                      +. + ..+++|+.|++++|. +.++..-..-..+++|+.|++.+|+
T Consensus        80 ~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   80 SEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred             ccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCc
Confidence            53 3 347788888888776 3333321111223778888887765

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.71  E-value=5.6e-09  Score=88.83  Aligned_cols=136  Identities=21%  Similarity=0.271  Sum_probs=48.8

Q ss_pred             CCCccceeEeeccCccchhhhcccccCC-CCCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccc
Q 011033          336 LPTNLHSLHIWGNMEIWKSMIERGRGFH-RFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERL  414 (495)
Q Consensus       336 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l  414 (495)
                      .+..+++|++.+|....  +    ..+. .+.+|+.|++++|  .+..++.-.        .++.|+.|++++ +.++++
T Consensus        17 n~~~~~~L~L~~n~I~~--I----e~L~~~l~~L~~L~Ls~N--~I~~l~~l~--------~L~~L~~L~L~~-N~I~~i   79 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIST--I----ENLGATLDKLEVLDLSNN--QITKLEGLP--------GLPRLKTLDLSN-NRISSI   79 (175)
T ss_dssp             -------------------------S--TT-TT--EEE-TTS----S--TT------------TT--EEE--S-S---S-
T ss_pred             ccccccccccccccccc--c----cchhhhhcCCCEEECCCC--CCccccCcc--------ChhhhhhcccCC-CCCCcc
Confidence            34455666666665211  1    1233 4566777777777  666655432        456788888888 777777


Q ss_pred             cccc-ccCCCCCeEeccCCCCCCCCCCC---CCccccceeeccCCchhHHh-hhcCCCeeeecceEEeccCccccccccc
Q 011033          415 SSSI-VDLQNLTHLNLVDCPKLKYFPEK---GLPSSLLQLSIYRCPLMEEK-CRKDGGLLTHIPSVQIDLNGFLTAEQRT  489 (495)
Q Consensus       415 ~~~~-~~~~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~l~~c~~l~~~-~~~~~~~i~~~~~~~i~~~~~~~~~~~~  489 (495)
                      ...+ ..+|+|++|++++ +++..+..-   ..+++|++|++.+||..... +...  -+.++|+++..|...++..++-
T Consensus        80 ~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~--vi~~lP~Lk~LD~~~V~~~ER~  156 (175)
T PF14580_consen   80 SEGLDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLF--VIYKLPSLKVLDGQDVTEEERQ  156 (175)
T ss_dssp             CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHH--HHHH-TT-SEETTEETTS-B--
T ss_pred             ccchHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHH--HHHHcChhheeCCEEccHHHhc
Confidence            6544 4678888888887 557666542   23688888888888854221 0000  5778888888877777776665


Q ss_pred             ee
Q 011033          490 TE  491 (495)
Q Consensus       490 ~~  491 (495)
                      ++
T Consensus       157 ~A  158 (175)
T PF14580_consen  157 EA  158 (175)
T ss_dssp             --
T ss_pred             cc
Confidence            54

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=4.1e-09  Score=98.55  Aligned_cols=239  Identities=13%  Similarity=0.117  Sum_probs=128.5

Q ss_pred             CCCCCCcEEeeeCCCCCCccc--ccCCCCCCccEEEeeCCCCcc---ccCCCCCCCCCCcEEEecCccccccccc-cccC
Q 011033          242 DNNTSLETINISGCENLKILP--SGLHNLGQLQEIEIWECENLV---SFPEGGLPCAKLSKLRIYGCERLEALPK-GLHN  315 (495)
Q Consensus       242 ~~~~~L~~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~~l~---~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~  315 (495)
                      .++++|+++.+.++ .+...+  .....|++++.|+++.| .+.   .+......+|+|+.|+++.|....-... .-..
T Consensus       118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~  195 (505)
T KOG3207|consen  118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL  195 (505)
T ss_pred             hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence            35677788877763 344333  24556788888888887 333   3334566777888888887753322211 1124


Q ss_pred             CCCcceeEecc-cccc--ccC-CCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhcccc
Q 011033          316 LTSLQQLTIGG-ELPS--LEE-DGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLG  391 (495)
Q Consensus       316 l~~L~~L~l~~-~l~~--~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  391 (495)
                      +++|+.|.++. ++..  +.. ...+|+|+.|++.+|..+.....    ....+..|++|++++|  ++..++...    
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~----~~~i~~~L~~LdLs~N--~li~~~~~~----  265 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT----STKILQTLQELDLSNN--NLIDFDQGY----  265 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc----hhhhhhHHhhccccCC--ccccccccc----
Confidence            56777777766 3331  111 13467777777777742221111    2334556777777776  444443211    


Q ss_pred             ccCCCCCCCceeeecccccccccc--cc-----cccCCCCCeEeccCCCCCCCCCC---CCCccccceeeccCCchhHHh
Q 011033          392 TALPLPASLTSLRIVDFPNLERLS--SS-----IVDLQNLTHLNLVDCPKLKYFPE---KGLPSSLLQLSIYRCPLMEEK  461 (495)
Q Consensus       392 ~~~~~~~~L~~L~l~~~~~l~~l~--~~-----~~~~~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~l~~c~~l~~~  461 (495)
                       ....++.|+.|.++. ..+.++-  ..     ...+++|++|++..+ ++++.+.   ...+++|+.|.+.+++.-++.
T Consensus       266 -~~~~l~~L~~Lnls~-tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~  342 (505)
T KOG3207|consen  266 -KVGTLPGLNQLNLSS-TGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITLNYLNKET  342 (505)
T ss_pred             -ccccccchhhhhccc-cCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhhhhcccccccccc
Confidence             011455677777776 3444432  11     345677777777773 3544443   223566666666666544443


Q ss_pred             hhcCCCeeeecceEEeccCccccccccceeeecC
Q 011033          462 CRKDGGLLTHIPSVQIDLNGFLTAEQRTTEIFYY  495 (495)
Q Consensus       462 ~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~  495 (495)
                      ..+..--|+.++++.-.+..-..+..+-.+..||
T Consensus       343 ~~a~~~VIAr~~~l~~LN~~di~p~eRR~AEl~~  376 (505)
T KOG3207|consen  343 DTAKLLVIARISQLVKLNDVDISPNERRDAELYY  376 (505)
T ss_pred             cceeEEeeeehhhhhhhcccccChHHhhhhhhhH
Confidence            3221114666666555555555555554444333

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=9.9e-10  Score=97.61  Aligned_cols=61  Identities=16%  Similarity=0.225  Sum_probs=29.3

Q ss_pred             CCccEEEeecCCCch-hhhhhcCCCCCCcEEeeeCCCCCCc-ccccCCCCCCccEEEeeCCCC
Q 011033          221 PSLKSLFVWYCPKLE-SIAERLDNNTSLETINISGCENLKI-LPSGLHNLGQLQEIEIWECEN  281 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~-l~~~~~~l~~L~~L~l~~~~~  281 (495)
                      |+|.+|++++|..+. .....+..++.|+.|.+++|..+.- ..-.+...|+|.+|++.+|-.
T Consensus       313 p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  313 PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             CceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence            344444444443322 2233455566666666666654421 111244456666666666533

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.62  E-value=1.4e-09  Score=104.91  Aligned_cols=187  Identities=24%  Similarity=0.303  Sum_probs=125.5

Q ss_pred             cEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-
Q 011033          248 ETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-  326 (495)
Q Consensus       248 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-  326 (495)
                      ...+++. +...++|..+..+..|+.+.+..| .+..+|.....+..|+.++++.|+ +..+|..++.++ |+.|-+++ 
T Consensus        78 ~~aDlsr-NR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   78 VFADLSR-NRFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhhccc-cccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecC
Confidence            3344554 344555555555566666666655 455566555555566666666654 455555555554 56666666 


Q ss_pred             ccccccCC-CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeee
Q 011033          327 ELPSLEED-GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRI  405 (495)
Q Consensus       327 ~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  405 (495)
                      +++.+|.. +..+.|..|+++.|...+ ...    .++++.+|+.|.+..|  .+..++.+-.       . -.|..||+
T Consensus       154 kl~~lp~~ig~~~tl~~ld~s~nei~s-lps----ql~~l~slr~l~vrRn--~l~~lp~El~-------~-LpLi~lDf  218 (722)
T KOG0532|consen  154 KLTSLPEEIGLLPTLAHLDVSKNEIQS-LPS----QLGYLTSLRDLNVRRN--HLEDLPEELC-------S-LPLIRLDF  218 (722)
T ss_pred             ccccCCcccccchhHHHhhhhhhhhhh-chH----HhhhHHHHHHHHHhhh--hhhhCCHHHh-------C-Cceeeeec
Confidence            66666554 456677777777776433 222    4778888999999987  8888887651       2 36899999


Q ss_pred             cccccccccccccccCCCCCeEeccCCCCCCCCCC----CCCccccceeeccCC
Q 011033          406 VDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPE----KGLPSSLLQLSIYRC  455 (495)
Q Consensus       406 ~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~~~L~~L~l~~c  455 (495)
                      +. +++..||..+.++..|++|-+.+++ +++=|.    .+..--.++|++.-|
T Consensus       219 Sc-Nkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  219 SC-NKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             cc-CceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence            98 9999999999999999999999977 666443    344445677777777

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.52  E-value=6.8e-07  Score=85.52  Aligned_cols=93  Identities=31%  Similarity=0.567  Sum_probs=61.8

Q ss_pred             cCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcc
Q 011033          241 LDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQ  320 (495)
Q Consensus       241 ~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  320 (495)
                      +..+.+++.|++++| .+..+|. +  .++|++|.+++|..++.+|..+  +++|+.|++++|..+..+|.      +|+
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence            444688889999887 6777762 2  2468899998888887777644  24889999988876666654      456


Q ss_pred             eeEecc-ccccccCCCCCCccceeEeec
Q 011033          321 QLTIGG-ELPSLEEDGLPTNLHSLHIWG  347 (495)
Q Consensus       321 ~L~l~~-~l~~~~~~~~~~~L~~L~l~~  347 (495)
                      .|++.. ....+  ...|++|++|.+.+
T Consensus       116 ~L~L~~n~~~~L--~~LPssLk~L~I~~  141 (426)
T PRK15386        116 SLEIKGSATDSI--KNVPNGLTSLSINS  141 (426)
T ss_pred             eEEeCCCCCccc--ccCcchHhheeccc
Confidence            666655 33332  23455677766644

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.51  E-value=1.1e-07  Score=94.17  Aligned_cols=175  Identities=23%  Similarity=0.326  Sum_probs=128.7

Q ss_pred             cCCCCCCcEEeeeCCCCCCcccccCCCCC-CccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCc
Q 011033          241 LDNNTSLETINISGCENLKILPSGLHNLG-QLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSL  319 (495)
Q Consensus       241 ~~~~~~L~~L~l~~~~~~~~l~~~~~~l~-~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L  319 (495)
                      +...+.++.|++.+ ..+..++......+ +|+.|+++.| .+..++.....+++|+.|++++|+ +.++|......++|
T Consensus       112 ~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L  188 (394)
T COG4886         112 LLELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNL  188 (394)
T ss_pred             hhcccceeEEecCC-cccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhh
Confidence            33447788888877 55666766666664 8899999887 677776666777889999998875 67776655578889


Q ss_pred             ceeEecc-ccccccCC-CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCC
Q 011033          320 QQLTIGG-ELPSLEED-GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLP  397 (495)
Q Consensus       320 ~~L~l~~-~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  397 (495)
                      +.|++++ .+..++.. +.+..|+++.+++|..+...     ..+.++.++..+.+.++  .+..++...       ..+
T Consensus       189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~-----~~~~~~~~l~~l~l~~n--~~~~~~~~~-------~~l  254 (394)
T COG4886         189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELL-----SSLSNLKNLSGLELSNN--KLEDLPESI-------GNL  254 (394)
T ss_pred             hheeccCCccccCchhhhhhhhhhhhhhcCCcceecc-----hhhhhcccccccccCCc--eeeeccchh-------ccc
Confidence            9999988 88888776 46667999999999633311     24677777887877776  555433322       256


Q ss_pred             CCCceeeecccccccccccccccCCCCCeEeccCCCC
Q 011033          398 ASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPK  434 (495)
Q Consensus       398 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~  434 (495)
                      ++++.|++++ +.+.+++. +....+|+.|+++++..
T Consensus       255 ~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         255 SNLETLDLSN-NQISSISS-LGSLTNLRELDLSGNSL  289 (394)
T ss_pred             cccceecccc-cccccccc-ccccCccCEEeccCccc
Confidence            6799999999 78888885 88889999999998543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.49  E-value=3.9e-08  Score=87.74  Aligned_cols=126  Identities=18%  Similarity=0.197  Sum_probs=58.1

Q ss_pred             CCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCC-CCCCcccee
Q 011033          266 HNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED-GLPTNLHSL  343 (495)
Q Consensus       266 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~-~~~~~L~~L  343 (495)
                      ..+..|+.+++++| .++.+.....-.|.++.|++++|. +..+. .+..+++|..||+++ .+..+... ...-+++.|
T Consensus       281 dTWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~-i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  281 DTWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNR-IRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL  357 (490)
T ss_pred             chHhhhhhcccccc-chhhhhhhhhhccceeEEeccccc-eeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence            33445555555555 444554444444555555555543 22232 245555555555555 33333221 123445555


Q ss_pred             EeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeecc
Q 011033          344 HIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVD  407 (495)
Q Consensus       344 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  407 (495)
                      .+++|..-+ .     .+++++-+|..|++++|  +++.+....+     ...+|-|+.+.+.+
T Consensus       358 ~La~N~iE~-L-----SGL~KLYSLvnLDl~~N--~Ie~ldeV~~-----IG~LPCLE~l~L~~  408 (490)
T KOG1259|consen  358 KLAQNKIET-L-----SGLRKLYSLVNLDLSSN--QIEELDEVNH-----IGNLPCLETLRLTG  408 (490)
T ss_pred             ehhhhhHhh-h-----hhhHhhhhheecccccc--chhhHHHhcc-----cccccHHHHHhhcC
Confidence            555554111 1     13455555566666665  4444433110     01334555555555

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.47  E-value=8.6e-09  Score=93.82  Aligned_cols=221  Identities=18%  Similarity=0.126  Sum_probs=107.9

Q ss_pred             CCccEEEeecCCCchhh----hhhcCCCCCCcEEeeeCCCCCC----cc-------cccCCCCCCccEEEeeCCCCcccc
Q 011033          221 PSLKSLFVWYCPKLESI----AERLDNNTSLETINISGCENLK----IL-------PSGLHNLGQLQEIEIWECENLVSF  285 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~----~l-------~~~~~~l~~L~~L~l~~~~~l~~l  285 (495)
                      .+++.+++++|.....-    ...+.+.++|+..+++.- ..+    .+       ..++..+++|++|++|.|..-...
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            56889999988765533    334566778888877652 111    12       334556778888888888432222


Q ss_pred             C----CCCCCCCCCcEEEecCccccccccc-cccCCCCcceeEeccccccccCCCCCCccceeEeeccCccchhhhcccc
Q 011033          286 P----EGGLPCAKLSKLRIYGCERLEALPK-GLHNLTSLQQLTIGGELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGR  360 (495)
Q Consensus       286 ~----~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  360 (495)
                      +    ..+..|.+|++|.+.+|- +..... .++  ..|..|..      -...+.++.|+.+...+|+.-......--.
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~--~al~~l~~------~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~  179 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLG--RALFELAV------NKKAASKPKLRVFICGRNRLENGGATALAE  179 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHH--HHHHHHHH------HhccCCCcceEEEEeeccccccccHHHHHH
Confidence            2    233456788888888773 322111 000  00111110      001223455566655555532222211112


Q ss_pred             cCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeecccccccc-----cccccccCCCCCeEeccCCCCC
Q 011033          361 GFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLER-----LSSSIVDLQNLTHLNLVDCPKL  435 (495)
Q Consensus       361 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~~~~L~~L~l~~c~~l  435 (495)
                      .++..+.|+.+.++.|....+.+....    .++...++|++||+.+ +.++.     +...+..++.|++|++++|. +
T Consensus       180 ~~~~~~~leevr~~qN~I~~eG~~al~----eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~El~l~dcl-l  253 (382)
T KOG1909|consen  180 AFQSHPTLEEVRLSQNGIRPEGVTALA----EALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRELNLGDCL-L  253 (382)
T ss_pred             HHHhccccceEEEecccccCchhHHHH----HHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccchheeecccccc-c
Confidence            345555666666666532222221111    1223445666666666 33322     22244555666666666664 3


Q ss_pred             CCCCCC-------CCccccceeeccCCch
Q 011033          436 KYFPEK-------GLPSSLLQLSIYRCPL  457 (495)
Q Consensus       436 ~~l~~~-------~~~~~L~~L~l~~c~~  457 (495)
                      +.-...       ...|+|+++.+.+|..
T Consensus       254 ~~~Ga~a~~~al~~~~p~L~vl~l~gNeI  282 (382)
T KOG1909|consen  254 ENEGAIAFVDALKESAPSLEVLELAGNEI  282 (382)
T ss_pred             ccccHHHHHHHHhccCCCCceeccCcchh
Confidence            332110       0145666666666643

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.41  E-value=8.4e-08  Score=85.61  Aligned_cols=203  Identities=18%  Similarity=0.202  Sum_probs=105.0

Q ss_pred             HhhhhhcccccceeecccccCC--------ccccccccCCCCccEEEEeCCCCCCCCCC-CCCCCCCcEEEEeCCCCCCc
Q 011033           44 QQQLCELSCRLEYLRLSYCEGL--------VKLPQSSLSLSSLREIEIYKCSSLVSFPE-VALPSKLKIIEIEGCDALKS  114 (495)
Q Consensus        44 ~~~l~~~~~~L~~L~ls~~~~l--------~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~  114 (495)
                      |+++-.++..|.+|.+++....        ..+|..+.-+++|+.+.++.| ....+-. ...-+.|+.+.+.+.. +..
T Consensus       174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~-~~~~i~~~~~~kptl~t~~v~~s~-~~~  251 (490)
T KOG1259|consen  174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSAL-STENIVDIELLKPTLQTICVHNTT-IQD  251 (490)
T ss_pred             hHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeecc-chhheeceeecCchhheeeeeccc-ccc
Confidence            6666667788999988865221        123444556788999999888 3333333 3345678888777644 222


Q ss_pred             cccccc----------------------cCCCCCccEEecccCccccccccc-cCCCCccEEEeccCCCccccccccccc
Q 011033          115 LPEAWM----------------------CDTNSSLETLYIEHCRTLTYLAGV-QLPRSLKRLDILSCDNIRTLTVEEGIQ  171 (495)
Q Consensus       115 ~~~~~~----------------------~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~  171 (495)
                      .|.-..                      -...+.|+++++++ +.++.+... ...|.++.|+++++ .+..+       
T Consensus       252 ~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N-~i~~v-------  322 (490)
T KOG1259|consen  252 VPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSG-NLITQIDESVKLAPKLRRLILSQN-RIRTV-------  322 (490)
T ss_pred             cccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccc-cchhhhhhhhhhccceeEEecccc-ceeee-------
Confidence            221110                      00013344444444 223333332 33344444444431 22111       


Q ss_pred             cCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEe
Q 011033          172 SSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETIN  251 (495)
Q Consensus       172 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  251 (495)
                                              .++.                   ..++|+.|++++|.. ..+.-|-..+.|+++|.
T Consensus       323 ------------------------~nLa-------------------~L~~L~~LDLS~N~L-s~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  323 ------------------------QNLA-------------------ELPQLQLLDLSGNLL-AECVGWHLKLGNIKTLK  358 (490)
T ss_pred             ------------------------hhhh-------------------hcccceEeecccchh-HhhhhhHhhhcCEeeee
Confidence                                    0111                   115666666665432 22333334556667777


Q ss_pred             eeCCCCCCcccccCCCCCCccEEEeeCCCCccccCC--CCCCCCCCcEEEecCcc
Q 011033          252 ISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPE--GGLPCAKLSKLRIYGCE  304 (495)
Q Consensus       252 l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~~~  304 (495)
                      +.. +.+..+ .+++++.+|..|++++| .++.+..  .++.+|.|+++.+.+|+
T Consensus       359 La~-N~iE~L-SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  359 LAQ-NKIETL-SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhh-hhHhhh-hhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence            766 334444 34566667777777776 4554442  45566667777666665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.35  E-value=4.7e-07  Score=89.70  Aligned_cols=190  Identities=22%  Similarity=0.263  Sum_probs=139.9

Q ss_pred             EEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCC-CCcEEEecCccccccccccccCCCCcceeEecc-
Q 011033          249 TINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCA-KLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-  326 (495)
Q Consensus       249 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-  326 (495)
                      .+....+...... ..+..++.++.|++.++ .+.+++....... +|+.|+++++. +..+|..+..+++|+.|++++ 
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCc-ccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc
Confidence            4555553322222 33445578999999887 7888888777764 89999999975 777766789999999999999 


Q ss_pred             ccccccCCC-CCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeee
Q 011033          327 ELPSLEEDG-LPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRI  405 (495)
Q Consensus       327 ~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  405 (495)
                      .+..++... ..+.|+.|++++|.... .. .   .......|++|.+++|  .....+...       ....++..+.+
T Consensus       174 ~l~~l~~~~~~~~~L~~L~ls~N~i~~-l~-~---~~~~~~~L~~l~~~~N--~~~~~~~~~-------~~~~~l~~l~l  239 (394)
T COG4886         174 DLSDLPKLLSNLSNLNNLDLSGNKISD-LP-P---EIELLSALEELDLSNN--SIIELLSSL-------SNLKNLSGLEL  239 (394)
T ss_pred             hhhhhhhhhhhhhhhhheeccCCcccc-Cc-h---hhhhhhhhhhhhhcCC--cceecchhh-------hhccccccccc
Confidence            888888775 88999999999998322 21 1   1234556999999997  333333322       23456777776


Q ss_pred             cccccccccccccccCCCCCeEeccCCCCCCCCCCCCCccccceeeccCCch
Q 011033          406 VDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCPL  457 (495)
Q Consensus       406 ~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~  457 (495)
                      .+ +.++.++..+..++++++|++++ +.+..++..+-..+++.|+++++..
T Consensus       240 ~~-n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         240 SN-NKLEDLPESIGNLSNLETLDLSN-NQISSISSLGSLTNLRELDLSGNSL  289 (394)
T ss_pred             CC-ceeeeccchhccccccceecccc-ccccccccccccCccCEEeccCccc
Confidence            66 67777677888999999999999 6688888755578999999998744

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=9.7e-09  Score=91.43  Aligned_cols=176  Identities=17%  Similarity=0.195  Sum_probs=90.8

Q ss_pred             CCcEEeeeCCCCCC--cccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCcccccccc--ccccCCCCcce
Q 011033          246 SLETINISGCENLK--ILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALP--KGLHNLTSLQQ  321 (495)
Q Consensus       246 ~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~  321 (495)
                      .|+.+++++. .+.  .+..-+..|.+|+.|.+.++...+.+...+..-.+|+.|+++.|.+++...  ..+.+++.|..
T Consensus       186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            5777777763 232  122234556777777777764333333333333477888888877776532  24566777777


Q ss_pred             eEecc-cccc--c--cCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCC
Q 011033          322 LTIGG-ELPS--L--EEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPL  396 (495)
Q Consensus       322 L~l~~-~l~~--~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  396 (495)
                      |++++ .+..  +  .....-++|..|+++|+........- --...++                               
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~-~tL~~rc-------------------------------  312 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHL-STLVRRC-------------------------------  312 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHH-HHHHHhC-------------------------------
Confidence            77766 2111  1  11123345555666555421100000 0012233                               


Q ss_pred             CCCCceeeeccccccccc-ccccccCCCCCeEeccCCCCCCC--CCCCCCccccceeeccCC
Q 011033          397 PASLTSLRIVDFPNLERL-SSSIVDLQNLTHLNLVDCPKLKY--FPEKGLPSSLLQLSIYRC  455 (495)
Q Consensus       397 ~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~~~L~~L~l~~c  455 (495)
                       ++|..||+++|..++.= ...+..++.|++|.++.|..+..  +-...-.|+|.+|++-||
T Consensus       313 -p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  313 -PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             -CceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence             45666666665555541 11455677777777777764422  111112567777777777

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.29  E-value=5.1e-06  Score=79.64  Aligned_cols=131  Identities=24%  Similarity=0.443  Sum_probs=70.4

Q ss_pred             CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEe
Q 011033          221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRI  300 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l  300 (495)
                      ..+++|++++| .+..+|.   -.++|++|.+.+|..+..+|..+.  ++|+.|++++|..+..+|.      +|+.|++
T Consensus        52 ~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~L~L  119 (426)
T PRK15386         52 RASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRSLEI  119 (426)
T ss_pred             cCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccceEEe
Confidence            56777777766 4555552   224577777777777666665442  5777777777765555443      5666666


Q ss_pred             cCcc--ccccccccccCCCCcceeEecc--ccccc-cCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeec
Q 011033          301 YGCE--RLEALPKGLHNLTSLQQLTIGG--ELPSL-EEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEG  375 (495)
Q Consensus       301 ~~~~--~~~~~~~~l~~l~~L~~L~l~~--~l~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  375 (495)
                      .++.  .+..+|.      +|+.|.+.+  ..... .+...|++|++|.+.+|..+.  .+.   .+.  .+|+.|.++.
T Consensus       120 ~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~--LP~---~LP--~SLk~L~ls~  186 (426)
T PRK15386        120 KGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII--LPE---KLP--ESLQSITLHI  186 (426)
T ss_pred             CCCCCcccccCcc------hHhheeccccccccccccccccCCcccEEEecCCCccc--Ccc---ccc--ccCcEEEecc
Confidence            5432  2333432      455555533  11111 011345677777777766432  111   111  3666666655


Q ss_pred             c
Q 011033          376 C  376 (495)
Q Consensus       376 ~  376 (495)
                      +
T Consensus       187 n  187 (426)
T PRK15386        187 E  187 (426)
T ss_pred             c
Confidence            4

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.28  E-value=9.1e-07  Score=61.59  Aligned_cols=58  Identities=26%  Similarity=0.366  Sum_probs=40.4

Q ss_pred             ccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCcccc-ccccCCCCccEEEEeCC
Q 011033           19 CSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLP-QSSLSLSSLREIEIYKC   86 (495)
Q Consensus        19 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~-~~~~~l~~L~~L~l~~~   86 (495)
                      |+|++|++++ +.++.++++    +|.++    ++|++|++++| .+..++ ..|..+++|++|++++|
T Consensus         1 p~L~~L~l~~-n~l~~i~~~----~f~~l----~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSN-NKLTEIPPD----SFSNL----PNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETS-STESEECTT----TTTTG----TTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCC-CCCCccCHH----HHcCC----CCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence            4677777777 467777765    56777    77777777776 444444 45677777777777776

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.25  E-value=3.6e-08  Score=95.31  Aligned_cols=184  Identities=23%  Similarity=0.307  Sum_probs=144.1

Q ss_pred             CCCCcccccC--CCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-cccccc
Q 011033          256 ENLKILPSGL--HNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLE  332 (495)
Q Consensus       256 ~~~~~l~~~~--~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~  332 (495)
                      ..++.+|...  ..+.--...+++.| .+..+|..+..|-.|+.+.++.|. +..+|..+..+..|..++++. .+..+|
T Consensus        60 rrlk~fpr~a~~~~ltdt~~aDlsrN-R~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~NqlS~lp  137 (722)
T KOG0532|consen   60 RRLKEFPRGAASYDLTDTVFADLSRN-RFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQLSHLP  137 (722)
T ss_pred             chhhcCCCccccccccchhhhhcccc-ccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccchhhcCC
Confidence            4455554322  23344456778887 677888877777789999898864 777888999999999999999 888887


Q ss_pred             CCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccc
Q 011033          333 EDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLE  412 (495)
Q Consensus       333 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  412 (495)
                      ..-..--|+.|-+++|.. + ..+.   .++....|.+|+.+.|  .++.++...+       .+.+|+.|.+.. +++.
T Consensus       138 ~~lC~lpLkvli~sNNkl-~-~lp~---~ig~~~tl~~ld~s~n--ei~slpsql~-------~l~slr~l~vrR-n~l~  202 (722)
T KOG0532|consen  138 DGLCDLPLKVLIVSNNKL-T-SLPE---EIGLLPTLAHLDVSKN--EIQSLPSQLG-------YLTSLRDLNVRR-NHLE  202 (722)
T ss_pred             hhhhcCcceeEEEecCcc-c-cCCc---ccccchhHHHhhhhhh--hhhhchHHhh-------hHHHHHHHHHhh-hhhh
Confidence            764445688999988873 3 3333   4678889999999999  8888888653       567899999999 8999


Q ss_pred             ccccccccCCCCCeEeccCCCCCCCCCCC-CCccccceeeccCCchh
Q 011033          413 RLSSSIVDLQNLTHLNLVDCPKLKYFPEK-GLPSSLLQLSIYRCPLM  458 (495)
Q Consensus       413 ~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l  458 (495)
                      .+|..+. .=.|..||++. +++..||.. ..+..|++|.+.++|.-
T Consensus       203 ~lp~El~-~LpLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  203 DLPEELC-SLPLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hCCHHHh-CCceeeeeccc-CceeecchhhhhhhhheeeeeccCCCC
Confidence            9998777 45789999998 779999985 34899999999999854

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.16  E-value=2.1e-06  Score=59.76  Aligned_cols=57  Identities=25%  Similarity=0.386  Sum_probs=45.1

Q ss_pred             cccceeecccccCCcccc-ccccCCCCccEEEEeCCCCCCCCCC--CCCCCCCcEEEEeCCC
Q 011033           52 CRLEYLRLSYCEGLVKLP-QSSLSLSSLREIEIYKCSSLVSFPE--VALPSKLKIIEIEGCD  110 (495)
Q Consensus        52 ~~L~~L~ls~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~  110 (495)
                      |+|++|++++| .+..+| ..+..+++|++|++++| .++.+++  +..+++|++|++++|.
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence            57888899887 667776 45788888999999887 6777765  7788888888888875

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.14  E-value=3.2e-07  Score=83.81  Aligned_cols=186  Identities=15%  Similarity=0.140  Sum_probs=93.2

Q ss_pred             cCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecC---CCchhhhh-------hcCCCCCCcEEe
Q 011033          182 YTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYC---PKLESIAE-------RLDNNTSLETIN  251 (495)
Q Consensus       182 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~---~~~~~~~~-------~~~~~~~L~~L~  251 (495)
                      .+..+++++++++.+--+..      -..++. ...+. ++|+..+++.-   .....+|+       .+..+++|++|+
T Consensus        27 ~~~~s~~~l~lsgnt~G~EA------a~~i~~-~L~~~-~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ld   98 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEA------ARAIAK-VLASK-KELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLD   98 (382)
T ss_pred             cccCceEEEeccCCchhHHH------HHHHHH-HHhhc-ccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEee
Confidence            34667888888873221111      000000 11122 56777777642   11223333       456778999999


Q ss_pred             eeCCCCCCcc----cccCCCCCCccEEEeeCCCCccccC--------------CCCCCCCCCcEEEecCccccc----cc
Q 011033          252 ISGCENLKIL----PSGLHNLGQLQEIEIWECENLVSFP--------------EGGLPCAKLSKLRIYGCERLE----AL  309 (495)
Q Consensus       252 l~~~~~~~~l----~~~~~~l~~L~~L~l~~~~~l~~l~--------------~~~~~~~~L~~L~l~~~~~~~----~~  309 (495)
                      ++.|-.-...    -+-+..+..|++|++.+| ++....              .-....+.|+.+....|+.-.    .+
T Consensus        99 LSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~  177 (382)
T KOG1909|consen   99 LSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATAL  177 (382)
T ss_pred             ccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHH
Confidence            9996433222    233556899999999988 554321              122334577777777664221    12


Q ss_pred             cccccCCCCcceeEecc-cccc--c---c-CCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeecc
Q 011033          310 PKGLHNLTSLQQLTIGG-ELPS--L---E-EDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGC  376 (495)
Q Consensus       310 ~~~l~~l~~L~~L~l~~-~l~~--~---~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  376 (495)
                      ...+...+.|+.+.+.. .+..  +   . ....++.|+.|++..|..-......-...+..+++|+.|++++|
T Consensus       178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence            22444556666666554 2211  1   0 01234555555555554322222111123444455555555555

>PLN03150 hypothetical protein; Provisional

Probab=98.06  E-value=8.9e-06  Score=84.76  Aligned_cols=68  Identities=25%  Similarity=0.265  Sum_probs=35.0

Q ss_pred             cccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC-CCCCCCCcEEEEeCCCCCCcccccc
Q 011033           52 CRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE-VALPSKLKIIEIEGCDALKSLPEAW  119 (495)
Q Consensus        52 ~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~  119 (495)
                      ++|+.|+|++|...+.+|..++.+++|+.|++++|.....+|. ++.+++|+.|++++|.....+|..+
T Consensus       442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l  510 (623)
T PLN03150        442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL  510 (623)
T ss_pred             CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHH
Confidence            5555555555544345555555555555555555533334443 4555555555555555444455443

>PLN03150 hypothetical protein; Provisional

Probab=97.98  E-value=1.5e-05  Score=83.05  Aligned_cols=105  Identities=19%  Similarity=0.234  Sum_probs=53.9

Q ss_pred             CcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc
Q 011033          247 LETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG  326 (495)
Q Consensus       247 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  326 (495)
                      ++.|+++++.....+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+..+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            44555555443344455555556666666665533334554555555666666666554445555555666666666655


Q ss_pred             -ccc-cccCC--CCCCccceeEeeccCcc
Q 011033          327 -ELP-SLEED--GLPTNLHSLHIWGNMEI  351 (495)
Q Consensus       327 -~l~-~~~~~--~~~~~L~~L~l~~~~~~  351 (495)
                       .+. .+|..  .....+..+++.+|..+
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccc
Confidence             322 22221  11234455666666533

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.90  E-value=1.3e-05  Score=71.99  Aligned_cols=188  Identities=15%  Similarity=0.151  Sum_probs=106.9

Q ss_pred             CCCCCcEEeeeCCCCC--CcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCcccc-ccccccccCCCCc
Q 011033          243 NNTSLETINISGCENL--KILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERL-EALPKGLHNLTSL  319 (495)
Q Consensus       243 ~~~~L~~L~l~~~~~~--~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L  319 (495)
                      .++.++++++.+|...  .++.+-+.++|.|++|+++.|+.-..+.....+..+|+.|-+.+-... +.....+..+|++
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            4567777777775322  223333556788888888777544344433345567777777664221 1222345567777


Q ss_pred             ceeEecc-ccccccC-----CCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhcccccc
Q 011033          320 QQLTIGG-ELPSLEE-----DGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTA  393 (495)
Q Consensus       320 ~~L~l~~-~l~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  393 (495)
                      +.|+++. ....+-.     ....+.++.|++.+|....-.-..  ...+.++++..+-+..|  .+.......     +
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~--~l~r~Fpnv~sv~v~e~--PlK~~s~ek-----~  219 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN--KLSRIFPNVNSVFVCEG--PLKTESSEK-----G  219 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH--hHHhhcccchheeeecC--cccchhhcc-----c
Confidence            7777766 2322211     123356777777777632211111  13455677777777776  555544422     1


Q ss_pred             CCCCCCCceeeeccccccccccc--ccccCCCCCeEeccCCCCCCCCCC
Q 011033          394 LPLPASLTSLRIVDFPNLERLSS--SIVDLQNLTHLNLVDCPKLKYFPE  440 (495)
Q Consensus       394 ~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~l~~  440 (495)
                      +...+.+..|.+.. +++.++..  .+..++.|..|.++++|-...+..
T Consensus       220 se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~  267 (418)
T KOG2982|consen  220 SEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG  267 (418)
T ss_pred             CCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence            22344566666666 56666554  677788888888888775555443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.87  E-value=1.1e-06  Score=89.67  Aligned_cols=214  Identities=23%  Similarity=0.326  Sum_probs=117.2

Q ss_pred             CCccEEEeecC-CCchhhh----hhcCCCCCCcEEeeeCCCCCCcc--cccCCCCCCccEEEeeCCCCcc--ccCCCCCC
Q 011033          221 PSLKSLFVWYC-PKLESIA----ERLDNNTSLETINISGCENLKIL--PSGLHNLGQLQEIEIWECENLV--SFPEGGLP  291 (495)
Q Consensus       221 ~~L~~L~l~~~-~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~l--~~~~~~l~~L~~L~l~~~~~l~--~l~~~~~~  291 (495)
                      +.|+.|++.++ ......+    .....+++|+.|+++++..+.+.  ......+++|+.|.+..|..++  .+......
T Consensus       214 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~  293 (482)
T KOG1947|consen  214 PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAER  293 (482)
T ss_pred             chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHh
Confidence            56777776652 2211111    12334567777777766544332  1112236677777766665443  22334555


Q ss_pred             CCCCcEEEecCcccccc--ccccccCCCCcceeEeccccccccCCCCCCccceeEeeccCccc-hhhhcccccCCCCCcc
Q 011033          292 CAKLSKLRIYGCERLEA--LPKGLHNLTSLQQLTIGGELPSLEEDGLPTNLHSLHIWGNMEIW-KSMIERGRGFHRFSSL  368 (495)
Q Consensus       292 ~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~l~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~l~~L  368 (495)
                      |++|++|++++|..++.  +......+++++.+.+..       ...++.++.+.+.++.... +....  .....++++
T Consensus       294 ~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~-------~~~c~~l~~~~l~~~~~~~~d~~~~--~~~~~~~~l  364 (482)
T KOG1947|consen  294 CPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS-------LNGCPSLTDLSLSGLLTLTSDDLAE--LILRSCPKL  364 (482)
T ss_pred             cCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh-------cCCCccHHHHHHHHhhccCchhHhH--HHHhcCCCc
Confidence            66777777777766532  222333455555554322       0114456666666555443 13322  356777778


Q ss_pred             ceEEeeccccccccchhhhccccccCCCCCCCc-eeeecccccc-cccccccccCCCCCeEeccCCCCCCCCCCC--CC-
Q 011033          369 RHLTIEGCDDDMVSFPLEDKRLGTALPLPASLT-SLRIVDFPNL-ERLSSSIVDLQNLTHLNLVDCPKLKYFPEK--GL-  443 (495)
Q Consensus       369 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l-~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~-  443 (495)
                      +.+.+..|  .                 -.... .+.+.+|+.+ ..+......+..++.|+++.|..++.-.-.  .. 
T Consensus       365 ~~~~l~~~--~-----------------~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~  425 (482)
T KOG1947|consen  365 TDLSLSYC--G-----------------ISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADS  425 (482)
T ss_pred             chhhhhhh--h-----------------ccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhh
Confidence            77777776  1                 11222 4566777777 444433444455899999998866553221  11 


Q ss_pred             ccccceeeccCCchhHHhh
Q 011033          444 PSSLLQLSIYRCPLMEEKC  462 (495)
Q Consensus       444 ~~~L~~L~l~~c~~l~~~~  462 (495)
                      +..+..+++.+|+.++...
T Consensus       426 ~~~~~~l~~~~~~~~~~~~  444 (482)
T KOG1947|consen  426 CSNLKDLDLSGCRVITLKS  444 (482)
T ss_pred             hhccccCCccCcccccchh
Confidence            5677888888887776543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.85  E-value=1.4e-05  Score=50.95  Aligned_cols=38  Identities=24%  Similarity=0.347  Sum_probs=18.5

Q ss_pred             ccceeecccccCCccccccccCCCCccEEEEeCCCCCCCC
Q 011033           53 RLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSF   92 (495)
Q Consensus        53 ~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l   92 (495)
                      +|++|++++| .+.++|..++++++|++|++++| .++++
T Consensus         2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N-~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN-PISDI   39 (44)
T ss_dssp             T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred             cceEEEccCC-CCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence            4555555554 33455544555555555555554 34443

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.74  E-value=5.9e-06  Score=82.11  Aligned_cols=214  Identities=21%  Similarity=0.256  Sum_probs=97.0

Q ss_pred             CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEe
Q 011033          221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRI  300 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l  300 (495)
                      .+++.+++.++.... +...+..+++|+.|++++ +.+..+ ..+..++.|+.|++++| .+..+... ..+++|+.+++
T Consensus        95 ~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~-N~I~~i-~~l~~l~~L~~L~l~~N-~i~~~~~~-~~l~~L~~l~l  169 (414)
T KOG0531|consen   95 KSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSF-NKITKL-EGLSTLTLLKELNLSGN-LISDISGL-ESLKSLKLLDL  169 (414)
T ss_pred             cceeeeeccccchhh-cccchhhhhcchheeccc-cccccc-cchhhccchhhheeccC-cchhccCC-ccchhhhcccC
Confidence            456666665443222 111144556666666665 334433 23444555666666665 33333321 12445666666


Q ss_pred             cCcccccccccc-ccCCCCcceeEecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCc--cceEEeecc
Q 011033          301 YGCERLEALPKG-LHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSS--LRHLTIEGC  376 (495)
Q Consensus       301 ~~~~~~~~~~~~-l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~--L~~L~l~~~  376 (495)
                      ++|. +..+... ...+.+++.+++.+ .+..+........+..+++..|.....      ..+..+..  |+.+.++++
T Consensus       170 ~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~------~~l~~~~~~~L~~l~l~~n  242 (414)
T KOG0531|consen  170 SYNR-IVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKL------EGLNELVMLHLRELYLSGN  242 (414)
T ss_pred             Ccch-hhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceec------cCcccchhHHHHHHhcccC
Confidence            6654 3333211 34555566666555 443333222233333334444431110      11222222  666666665


Q ss_pred             ccccccchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCC---CCC--CCCccccceee
Q 011033          377 DDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKY---FPE--KGLPSSLLQLS  451 (495)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~---l~~--~~~~~~L~~L~  451 (495)
                        ++...+..       ...++.+..|++.+ +.+..+. .+...+.+..+...+......   ...  ....+.++...
T Consensus       243 --~i~~~~~~-------~~~~~~l~~l~~~~-n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (414)
T KOG0531|consen  243 --RISRSPEG-------LENLKNLPVLDLSS-NRISNLE-GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLT  311 (414)
T ss_pred             --cccccccc-------ccccccccccchhh-ccccccc-cccccchHHHhccCcchhcchhhhhccccccccccccccc
Confidence              44444211       12345666666666 4444433 344445555555555331111   111  12245666666


Q ss_pred             ccCCch
Q 011033          452 IYRCPL  457 (495)
Q Consensus       452 l~~c~~  457 (495)
                      +.++|.
T Consensus       312 ~~~~~~  317 (414)
T KOG0531|consen  312 LELNPI  317 (414)
T ss_pred             cccCcc
Confidence            666653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.70  E-value=2.2e-05  Score=81.76  Aligned_cols=128  Identities=16%  Similarity=0.149  Sum_probs=79.1

Q ss_pred             ccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCc-cccccccCCCCccEEEEeCCCCCCCCCCCCC
Q 011033           19 CSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLV-KLPQSSLSLSSLREIEIYKCSSLVSFPEVAL   97 (495)
Q Consensus        19 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~-~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~   97 (495)
                      .+|+.|++++-.   .+..+    |...++.-+|.|+.|.+++-.... +......++++|..||++++ .++.+..++.
T Consensus       122 ~nL~~LdI~G~~---~~s~~----W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~GIS~  193 (699)
T KOG3665|consen  122 QNLQHLDISGSE---LFSNG----WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNLSGISR  193 (699)
T ss_pred             HhhhhcCccccc---hhhcc----HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCcHHHhc
Confidence            357788887732   22332    555666667888888887743222 22233557888888888885 7777766777


Q ss_pred             CCCCcEEEEeCCCCCCccc--cccccCCCCCccEEecccCccccc-------cccccCCCCccEEEecc
Q 011033           98 PSKLKIIEIEGCDALKSLP--EAWMCDTNSSLETLYIEHCRTLTY-------LAGVQLPRSLKRLDILS  157 (495)
Q Consensus        98 ~~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~-------~~~~~~~~~L~~L~l~~  157 (495)
                      +++|+.|.+.+-. ++...  .+++.+  ++|+.||++.......       +.....+|+|+.|+.++
T Consensus       194 LknLq~L~mrnLe-~e~~~~l~~LF~L--~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  194 LKNLQVLSMRNLE-FESYQDLIDLFNL--KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             cccHHHHhccCCC-CCchhhHHHHhcc--cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            8888888777755 33222  244444  7788888877433221       11224577888888776

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.69  E-value=6e-06  Score=82.04  Aligned_cols=212  Identities=19%  Similarity=0.202  Sum_probs=123.3

Q ss_pred             CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEe
Q 011033          221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRI  300 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l  300 (495)
                      ..++.+.++.+.... ....+..+++|+.|++.+ +.+..+...+..+++|++|++++| .++.+.. ...++.|+.|++
T Consensus        72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~l  147 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELNL  147 (414)
T ss_pred             HhHHhhccchhhhhh-hhcccccccceeeeeccc-cchhhcccchhhhhcchheecccc-ccccccc-hhhccchhhhee
Confidence            344555544333222 122355677778888877 445555333666788888888877 5555443 223335788888


Q ss_pred             cCccccccccccccCCCCcceeEecc-ccccccC--CCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccc
Q 011033          301 YGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEE--DGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCD  377 (495)
Q Consensus       301 ~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  377 (495)
                      .+|. +..+. .+..+++|+.+++++ .+..+..  .....+++.+.+.+|......      .+..+..+..+++..+ 
T Consensus       148 ~~N~-i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~------~~~~~~~l~~~~l~~n-  218 (414)
T KOG0531|consen  148 SGNL-ISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE------GLDLLKKLVLLSLLDN-  218 (414)
T ss_pred             ccCc-chhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc------chHHHHHHHHhhcccc-
Confidence            8774 55553 556677777788777 6666655  356677777777777632211      1222233333344444 


Q ss_pred             cccccchhhhccccccCCCCCC--CceeeecccccccccccccccCCCCCeEeccCCCCCCCCCCCCCccccceeeccCC
Q 011033          378 DDMVSFPLEDKRLGTALPLPAS--LTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRC  455 (495)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c  455 (495)
                       .+..+....        ..+.  |+.+++.+ +.+..++..+..+..+..+++.+ +.+..+......+.+..+.....
T Consensus       219 -~i~~~~~l~--------~~~~~~L~~l~l~~-n~i~~~~~~~~~~~~l~~l~~~~-n~~~~~~~~~~~~~~~~~~~~~~  287 (414)
T KOG0531|consen  219 -KISKLEGLN--------ELVMLHLRELYLSG-NRISRSPEGLENLKNLPVLDLSS-NRISNLEGLERLPKLSELWLNDN  287 (414)
T ss_pred             -cceeccCcc--------cchhHHHHHHhccc-Cccccccccccccccccccchhh-ccccccccccccchHHHhccCcc
Confidence             333333311        1222  78888888 67777755777888888888888 44555544334455555555555


Q ss_pred             c
Q 011033          456 P  456 (495)
Q Consensus       456 ~  456 (495)
                      +
T Consensus       288 ~  288 (414)
T KOG0531|consen  288 K  288 (414)
T ss_pred             h
Confidence            4

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.57  E-value=8.3e-06  Score=83.14  Aligned_cols=115  Identities=26%  Similarity=0.419  Sum_probs=63.9

Q ss_pred             hhhcccccceeecccccCCcc--ccccccCCCCccEEEEeCC-CCCCCCC-----CCCCCCCCcEEEEeCCCCCCccccc
Q 011033           47 LCELSCRLEYLRLSYCEGLVK--LPQSSLSLSSLREIEIYKC-SSLVSFP-----EVALPSKLKIIEIEGCDALKSLPEA  118 (495)
Q Consensus        47 l~~~~~~L~~L~ls~~~~l~~--l~~~~~~l~~L~~L~l~~~-~~l~~l~-----~~~~~~~L~~L~l~~~~~~~~~~~~  118 (495)
                      +...+++|+.|.+.+|..+..  +-.....++.|++|++++| ......+     ....+++|+.|+++.+..+.+..-.
T Consensus       183 l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~  262 (482)
T KOG1947|consen  183 LLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS  262 (482)
T ss_pred             HHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence            333457777777777655554  3233556677777777662 2222222     1334567777777776654444433


Q ss_pred             cccCCCCCccEEecccCccccccccc---cCCCCccEEEeccCCCc
Q 011033          119 WMCDTNSSLETLYIEHCRTLTYLAGV---QLPRSLKRLDILSCDNI  161 (495)
Q Consensus       119 ~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~l  161 (495)
                      .....|++|+.|.+.+|..++.....   ..+++|++|++++|..+
T Consensus       263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            33333567777776666554432211   44566777777777665

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.55  E-value=6.4e-05  Score=78.39  Aligned_cols=108  Identities=20%  Similarity=0.239  Sum_probs=79.7

Q ss_pred             ccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCC---
Q 011033           17 DICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFP---   93 (495)
Q Consensus        17 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~---   93 (495)
                      -||.|+.|.+.+ ..+..       ..|.+++..||+|+.||+|++ .+..+ .+++++++|+.|.+.+- .+....   
T Consensus       146 ~LPsL~sL~i~~-~~~~~-------~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnL-e~e~~~~l~  214 (699)
T KOG3665|consen  146 MLPSLRSLVISG-RQFDN-------DDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNL-EFESYQDLI  214 (699)
T ss_pred             hCcccceEEecC-ceecc-------hhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHHHhccCC-CCCchhhHH
Confidence            599999999999 44432       248889999999999999996 66777 56899999999999876 333322   


Q ss_pred             CCCCCCCCcEEEEeCCCCCCcc--cccccc--CCCCCccEEecccC
Q 011033           94 EVALPSKLKIIEIEGCDALKSL--PEAWMC--DTNSSLETLYIEHC  135 (495)
Q Consensus        94 ~~~~~~~L~~L~l~~~~~~~~~--~~~~~~--~~~~~L~~L~l~~~  135 (495)
                      .+..+++|+.||+|.-.....-  ...+..  ..+|+|+.|+.++.
T Consensus       215 ~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT  260 (699)
T KOG3665|consen  215 DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT  260 (699)
T ss_pred             HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence            3778999999999986533221  221111  22389999999984

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.53  E-value=0.0001  Score=46.92  Aligned_cols=39  Identities=10%  Similarity=0.357  Sum_probs=28.3

Q ss_pred             CCccEEEEeCCCCCCCCCC-CCCCCCCcEEEEeCCCCCCccc
Q 011033           76 SSLREIEIYKCSSLVSFPE-VALPSKLKIIEIEGCDALKSLP  116 (495)
Q Consensus        76 ~~L~~L~l~~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~  116 (495)
                      ++|++|++++| .++++|+ ++++++|+.|++++|. +.+++
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP-ISDIS   40 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred             CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence            46888888887 7778887 8888888888888876 55444

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.46  E-value=4.6e-06  Score=83.40  Aligned_cols=106  Identities=25%  Similarity=0.226  Sum_probs=76.5

Q ss_pred             CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccc
Q 011033          335 GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERL  414 (495)
Q Consensus       335 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l  414 (495)
                      ...+.|+.|+++.|...+-.      .+..++.|++||++.|  .+..++.-.       ..--.|..|.+++ +.++.+
T Consensus       184 qll~ale~LnLshNk~~~v~------~Lr~l~~LkhLDlsyN--~L~~vp~l~-------~~gc~L~~L~lrn-N~l~tL  247 (1096)
T KOG1859|consen  184 QLLPALESLNLSHNKFTKVD------NLRRLPKLKHLDLSYN--CLRHVPQLS-------MVGCKLQLLNLRN-NALTTL  247 (1096)
T ss_pred             HHHHHhhhhccchhhhhhhH------HHHhcccccccccccc--hhccccccc-------hhhhhheeeeecc-cHHHhh
Confidence            44677888888888743311      4678899999999998  666665522       1112599999999 788887


Q ss_pred             ccccccCCCCCeEeccCCCCCCCCCCC---CCccccceeeccCCchh
Q 011033          415 SSSIVDLQNLTHLNLVDCPKLKYFPEK---GLPSSLLQLSIYRCPLM  458 (495)
Q Consensus       415 ~~~~~~~~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~l~~c~~l  458 (495)
                      - ++.++.+|+.||+++ +-|......   ..+..|++|.+.|||..
T Consensus       248 ~-gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  248 R-GIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             h-hHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            7 788999999999999 545443332   23688999999999854

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.43  E-value=1.1e-05  Score=80.75  Aligned_cols=101  Identities=18%  Similarity=0.120  Sum_probs=75.4

Q ss_pred             CccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccccc-
Q 011033          338 TNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-  416 (495)
Q Consensus       338 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-  416 (495)
                      ..|...+++.|...  .+.   ..++=++.|+.|++++|  ++..+..--        .++.|+.|||+. +.++.+|. 
T Consensus       164 n~L~~a~fsyN~L~--~mD---~SLqll~ale~LnLshN--k~~~v~~Lr--------~l~~LkhLDlsy-N~L~~vp~l  227 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV--LMD---ESLQLLPALESLNLSHN--KFTKVDNLR--------RLPKLKHLDLSY-NCLRHVPQL  227 (1096)
T ss_pred             hhHhhhhcchhhHH--hHH---HHHHHHHHhhhhccchh--hhhhhHHHH--------hccccccccccc-chhcccccc
Confidence            35666666666521  111   35777888999999998  666666433        567999999999 88888886 


Q ss_pred             ccccCCCCCeEeccCCCCCCCCCCCCCccccceeeccCCc
Q 011033          417 SIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCP  456 (495)
Q Consensus       417 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~  456 (495)
                      ....|. |+.|.+++ +.++++-....+.+|+.|++++|-
T Consensus       228 ~~~gc~-L~~L~lrn-N~l~tL~gie~LksL~~LDlsyNl  265 (1096)
T KOG1859|consen  228 SMVGCK-LQLLNLRN-NALTTLRGIENLKSLYGLDLSYNL  265 (1096)
T ss_pred             chhhhh-heeeeecc-cHHHhhhhHHhhhhhhccchhHhh
Confidence            445565 99999999 678888776678999999999883

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.35  E-value=0.00015  Score=65.32  Aligned_cols=206  Identities=15%  Similarity=0.139  Sum_probs=126.2

Q ss_pred             CCCCccEEEeeCCCCccccC---CCCCCCCCCcEEEecCccccccccccc-cCCCCcceeEecc-cccc--ccC-CCCCC
Q 011033          267 NLGQLQEIEIWECENLVSFP---EGGLPCAKLSKLRIYGCERLEALPKGL-HNLTSLQQLTIGG-ELPS--LEE-DGLPT  338 (495)
Q Consensus       267 ~l~~L~~L~l~~~~~l~~l~---~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~-~l~~--~~~-~~~~~  338 (495)
                      .++.++.+++.+| .+.++.   .+...+|.|++|+++.|+.-..+ ..+ ....+|+.|-+.+ .+..  ... ....|
T Consensus        69 ~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   69 SVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP  146 (418)
T ss_pred             Hhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence            4578899999998 555544   45667889999999987654433 223 3567888888877 3322  111 24466


Q ss_pred             ccceeEeeccCc----cchhhhcccccCCC-CCccceEEeeccccccccchhhhccccccCCCCCCCceeeecccccccc
Q 011033          339 NLHSLHIWGNME----IWKSMIERGRGFHR-FSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLER  413 (495)
Q Consensus       339 ~L~~L~l~~~~~----~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  413 (495)
                      .+++|+++.|..    +++.      .... -+.+++|+.-+|  ..+......    .....++++..+.+.+|+- +.
T Consensus       147 ~vtelHmS~N~~rq~n~Dd~------c~e~~s~~v~tlh~~~c--~~~~w~~~~----~l~r~Fpnv~sv~v~e~Pl-K~  213 (418)
T KOG2982|consen  147 KVTELHMSDNSLRQLNLDDN------CIEDWSTEVLTLHQLPC--LEQLWLNKN----KLSRIFPNVNSVFVCEGPL-KT  213 (418)
T ss_pred             hhhhhhhccchhhhhccccc------cccccchhhhhhhcCCc--HHHHHHHHH----hHHhhcccchheeeecCcc-cc
Confidence            777888777731    1111      1111 235666777676  333222111    0113567888888888643 33


Q ss_pred             ccc--ccccCCCCCeEeccCCCCCCCCCC---CCCccccceeeccCCchhHHhhhcCCC---eeeecceEEeccCccccc
Q 011033          414 LSS--SIVDLQNLTHLNLVDCPKLKYFPE---KGLPSSLLQLSIYRCPLMEEKCRKDGG---LLTHIPSVQIDLNGFLTA  485 (495)
Q Consensus       414 l~~--~~~~~~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~l~~c~~l~~~~~~~~~---~i~~~~~~~i~~~~~~~~  485 (495)
                      ...  ....+|.+--|+++. +++.+..+   ..-+++|..|.+...|.....-. ++.   .|+.++.+++.+++-++.
T Consensus       214 ~s~ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~-~err~llIaRL~~v~vLNGskIss  291 (418)
T KOG2982|consen  214 ESSEKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG-GERRFLLIARLTKVQVLNGSKISS  291 (418)
T ss_pred             hhhcccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccC-CcceEEEEeeccceEEecCcccch
Confidence            222  455667777778877 45666433   12378999999999997654322 222   799999999988887776


Q ss_pred             cccc
Q 011033          486 EQRT  489 (495)
Q Consensus       486 ~~~~  489 (495)
                      .++.
T Consensus       292 ~er~  295 (418)
T KOG2982|consen  292 RERK  295 (418)
T ss_pred             hhhh
Confidence            6543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.82  E-value=2.8e-05  Score=69.18  Aligned_cols=101  Identities=18%  Similarity=0.227  Sum_probs=73.8

Q ss_pred             ccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC--
Q 011033           17 DICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--   94 (495)
Q Consensus        17 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~--   94 (495)
                      .+.+.+.|+..+| ++++|.-      ...|    +.|+.|.||-| .+.++.. +..|++|++|+|+.| .+.++..  
T Consensus        17 dl~~vkKLNcwg~-~L~DIsi------c~kM----p~lEVLsLSvN-kIssL~p-l~rCtrLkElYLRkN-~I~sldEL~   82 (388)
T KOG2123|consen   17 DLENVKKLNCWGC-GLDDISI------CEKM----PLLEVLSLSVN-KISSLAP-LQRCTRLKELYLRKN-CIESLDELE   82 (388)
T ss_pred             HHHHhhhhcccCC-CccHHHH------HHhc----ccceeEEeecc-ccccchh-HHHHHHHHHHHHHhc-ccccHHHHH
Confidence            3667889999996 5777633      5566    99999999987 6677654 788999999999997 6665544  


Q ss_pred             -CCCCCCCcEEEEeCCCCCCcccccccc---CCCCCccEEe
Q 011033           95 -VALPSKLKIIEIEGCDALKSLPEAWMC---DTNSSLETLY  131 (495)
Q Consensus        95 -~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~  131 (495)
                       +.++++|+.|-+..|+..+.-+..+..   ..+|+|+.|+
T Consensus        83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence             778899999999998877665544321   1125666655

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.82  E-value=0.00032  Score=62.39  Aligned_cols=82  Identities=18%  Similarity=0.118  Sum_probs=45.3

Q ss_pred             CCccEEEeecCCCchhhhhh----cCCCCCCcEEeeeCCCCCC----cc-------cccCCCCCCccEEEeeCCCCcccc
Q 011033          221 PSLKSLFVWYCPKLESIAER----LDNNTSLETINISGCENLK----IL-------PSGLHNLGQLQEIEIWECENLVSF  285 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~----~l-------~~~~~~l~~L~~L~l~~~~~l~~l  285 (495)
                      ..++.+++++|...+.-..+    +.+-++|+..+++.- ..+    .+       ..++-+||+|+..++|.|..-...
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            56777888877766544443    334556666666542 111    11       234556777777777776432232


Q ss_pred             CC----CCCCCCCCcEEEecCc
Q 011033          286 PE----GGLPCAKLSKLRIYGC  303 (495)
Q Consensus       286 ~~----~~~~~~~L~~L~l~~~  303 (495)
                      |.    .+..-..|++|.+++|
T Consensus       109 ~e~L~d~is~~t~l~HL~l~Nn  130 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNN  130 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecC
Confidence            22    2333446777777665

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.77  E-value=0.002  Score=54.97  Aligned_cols=102  Identities=16%  Similarity=0.118  Sum_probs=67.7

Q ss_pred             cccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC--CCCCCCCcEEEEeCCCCCCccccccccCCCCCccE
Q 011033           52 CRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLET  129 (495)
Q Consensus        52 ~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~  129 (495)
                      .+...+||++| .+..++. +..+++|..|.+.+| .++.+.+  ...+++|..|.+.+|. +..+..--.-..|++|++
T Consensus        42 d~~d~iDLtdN-dl~~l~~-lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   42 DQFDAIDLTDN-DLRKLDN-LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEY  117 (233)
T ss_pred             cccceeccccc-chhhccc-CCCccccceEEecCC-cceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccce
Confidence            67788888887 4455543 667888889999886 6776655  4457788889888876 333333222344588888


Q ss_pred             EecccCccccccc-----cccCCCCccEEEeccC
Q 011033          130 LYIEHCRTLTYLA-----GVQLPRSLKRLDILSC  158 (495)
Q Consensus       130 L~l~~~~~l~~~~-----~~~~~~~L~~L~l~~~  158 (495)
                      |.+-+++ ++...     ....+|+|+.|++.+-
T Consensus       118 Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  118 LTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence            8887754 32221     1245678888887764

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.53  E-value=0.0052  Score=52.54  Aligned_cols=41  Identities=22%  Similarity=0.105  Sum_probs=20.9

Q ss_pred             CCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeec
Q 011033          334 DGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEG  375 (495)
Q Consensus       334 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  375 (495)
                      ...+|.|++|.+-+|+.-. .-..+...+..+|+|+.||..+
T Consensus       109 La~~p~L~~Ltll~Npv~~-k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  109 LASCPKLEYLTLLGNPVEH-KKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             hccCCccceeeecCCchhc-ccCceeEEEEecCcceEeehhh
Confidence            3445566666666665211 1111223566666666666655

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.32  E-value=0.00027  Score=56.23  Aligned_cols=34  Identities=15%  Similarity=0.228  Sum_probs=16.4

Q ss_pred             cccceeecccccCCccccccccCCCCccEEEEeCC
Q 011033           52 CRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKC   86 (495)
Q Consensus        52 ~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~   86 (495)
                      +.++.|++++| .+.++|..+..++.|+.|+++.|
T Consensus        77 ~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N  110 (177)
T KOG4579|consen   77 PTATTLNLANN-EISDVPEELAAMPALRSLNLRFN  110 (177)
T ss_pred             chhhhhhcchh-hhhhchHHHhhhHHhhhcccccC
Confidence            44455555543 34444444444455555555444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.16  E-value=0.0077  Score=53.91  Aligned_cols=39  Identities=15%  Similarity=0.302  Sum_probs=22.6

Q ss_pred             ccCCCCccEEEEeCCCCCCCCCC-----CCCCCCCcEEEEeCCC
Q 011033           72 SLSLSSLREIEIYKCSSLVSFPE-----VALPSKLKIIEIEGCD  110 (495)
Q Consensus        72 ~~~l~~L~~L~l~~~~~l~~l~~-----~~~~~~L~~L~l~~~~  110 (495)
                      +-.|++|+.+++++|..-...|.     +..-..|++|.+++|.
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG  131 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG  131 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence            44566666666666643333332     5555666666666665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.91  E-value=0.0038  Score=55.62  Aligned_cols=85  Identities=18%  Similarity=0.229  Sum_probs=43.8

Q ss_pred             hcccccceeecccccCCccccccccCCCCccEEEEeCC--CCCCCCCC-CCCCCCCcEEEEeCCCCCCccccccccCCCC
Q 011033           49 ELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKC--SSLVSFPE-VALPSKLKIIEIEGCDALKSLPEAWMCDTNS  125 (495)
Q Consensus        49 ~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~--~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  125 (495)
                      ..|..|+.|++.++.. .++. .+-.+++||+|.++.|  .-...++. +..+++|++|++++|. +..+..--.-...+
T Consensus        40 d~~~~le~ls~~n~gl-tt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~  116 (260)
T KOG2739|consen   40 DEFVELELLSVINVGL-TTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELE  116 (260)
T ss_pred             ccccchhhhhhhccce-eecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhc
Confidence            3446666666666522 2222 1445667777777776  22223332 4455777777777765 22211110111225


Q ss_pred             CccEEecccCc
Q 011033          126 SLETLYIEHCR  136 (495)
Q Consensus       126 ~L~~L~l~~~~  136 (495)
                      +|..|++.+|.
T Consensus       117 nL~~Ldl~n~~  127 (260)
T KOG2739|consen  117 NLKSLDLFNCS  127 (260)
T ss_pred             chhhhhcccCC
Confidence            56677776654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.71  E-value=0.03  Score=45.37  Aligned_cols=105  Identities=15%  Similarity=0.225  Sum_probs=49.8

Q ss_pred             CccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccc-cccCCCCccEEEEeCCCCCC
Q 011033           12 NELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQ-SSLSLSSLREIEIYKCSSLV   90 (495)
Q Consensus        12 ~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~   90 (495)
                      ...|.++.+|+.+.+.+  .++.|...    .|.+.    ++|+.+++.++  +..++. .+..+++|+.+.+.+  .+.
T Consensus         5 ~~~F~~~~~l~~i~~~~--~~~~I~~~----~F~~~----~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~   70 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN--TIKKIGEN----AFSNC----TSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLK   70 (129)
T ss_dssp             TTTTTT-TT--EEEETS--T--EE-TT----TTTT-----TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-
T ss_pred             HHHHhCCCCCCEEEECC--CeeEeChh----hcccc----ccccccccccc--ccccceeeeecccccccccccc--ccc
Confidence            45566777777777765  35666554    45555    67777777663  444443 366666777777754  333


Q ss_pred             CCCC--CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEeccc
Q 011033           91 SFPE--VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEH  134 (495)
Q Consensus        91 ~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  134 (495)
                      .++.  +..+++|+.+.+..+  +..++...+..  .+|+.+.+..
T Consensus        71 ~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~--~~l~~i~~~~  112 (129)
T PF13306_consen   71 SIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSN--CNLKEINIPS  112 (129)
T ss_dssp             EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT---T--EEE-TT
T ss_pred             ccccccccccccccccccCcc--ccEEchhhhcC--CCceEEEECC
Confidence            3333  556777777777542  34444444322  2566666543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.14  E-value=0.001  Score=59.50  Aligned_cols=99  Identities=19%  Similarity=0.200  Sum_probs=71.6

Q ss_pred             cccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEe
Q 011033           52 CRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLY  131 (495)
Q Consensus        52 ~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  131 (495)
                      .+.+.|+..|| .+.+|.. ..+++.|+.|.|+-| .++++.++..|.+|+.|++..|. +.++.+-..-...++|+.|.
T Consensus        19 ~~vkKLNcwg~-~L~DIsi-c~kMp~lEVLsLSvN-kIssL~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   19 ENVKKLNCWGC-GLDDISI-CEKMPLLEVLSLSVN-KISSLAPLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHhhhhcccCC-CccHHHH-HHhcccceeEEeecc-ccccchhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHh
Confidence            67888899988 5566643 558889999999997 88888889999999999999977 66666544434448899998


Q ss_pred             cccCccccccccc------cCCCCccEEE
Q 011033          132 IEHCRTLTYLAGV------QLPRSLKRLD  154 (495)
Q Consensus       132 l~~~~~l~~~~~~------~~~~~L~~L~  154 (495)
                      +..|+-...-+..      ..+|+|++|+
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            8876533222111      3456777665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.01  E-value=0.014  Score=52.08  Aligned_cols=102  Identities=19%  Similarity=0.219  Sum_probs=66.5

Q ss_pred             cceeecccccCCc-cccccccCCCCccEEEEeCCCCCCCCCCCCCCCCCcEEEEeCC--CCCCccccccccCCCCCccEE
Q 011033           54 LEYLRLSYCEGLV-KLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGC--DALKSLPEAWMCDTNSSLETL  130 (495)
Q Consensus        54 L~~L~ls~~~~l~-~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~~L~~L  130 (495)
                      .+.+.+.+|.... .+......+..|+.|++.++ .++++..+-.+++|++|.++.|  .....++.-....  ++|+++
T Consensus        20 v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~-gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~--P~l~~l   96 (260)
T KOG2739|consen   20 VDELFLDNARSGAGKLGGLTDEFVELELLSVINV-GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKA--PNLKVL   96 (260)
T ss_pred             hhhhhcchhhhcCCCcccccccccchhhhhhhcc-ceeecccCCCcchhhhhcccCCcccccccceehhhhC--CceeEE
Confidence            4444444542221 34444557778888888887 6666666778899999999998  4444444443333  899999


Q ss_pred             ecccCcccc---ccccccCCCCccEEEeccCC
Q 011033          131 YIEHCRTLT---YLAGVQLPRSLKRLDILSCD  159 (495)
Q Consensus       131 ~l~~~~~l~---~~~~~~~~~~L~~L~l~~~~  159 (495)
                      ++++| ++.   ++.....+.+|..|++..|.
T Consensus        97 ~ls~N-ki~~lstl~pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   97 NLSGN-KIKDLSTLRPLKELENLKSLDLFNCS  127 (260)
T ss_pred             eecCC-ccccccccchhhhhcchhhhhcccCC
Confidence            99985 343   34444556667777776663

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=94.89  E-value=0.0012  Score=52.68  Aligned_cols=101  Identities=19%  Similarity=0.220  Sum_probs=58.6

Q ss_pred             ccEEEeecCCCch--hhhhhcCCCCCCcEEeeeCCCCCCcccccCC-CCCCccEEEeeCCCCccccCCCCCCCCCCcEEE
Q 011033          223 LKSLFVWYCPKLE--SIAERLDNNTSLETINISGCENLKILPSGLH-NLGQLQEIEIWECENLVSFPEGGLPCAKLSKLR  299 (495)
Q Consensus       223 L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~  299 (495)
                      +..++++.|....  ..+-.+.....|+..++++ +.++.+|..+. .++.++.|++++| .+.++|..+..+|.|+.|+
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcc
Confidence            4445555554331  2222344455566667776 44555654433 4457777777776 6677776666777777777


Q ss_pred             ecCccccccccccccCCCCcceeEecc
Q 011033          300 IYGCERLEALPKGLHNLTSLQQLTIGG  326 (495)
Q Consensus       300 l~~~~~~~~~~~~l~~l~~L~~L~l~~  326 (495)
                      ++.|+ +...|.-+..+.++-.|+.-+
T Consensus       107 l~~N~-l~~~p~vi~~L~~l~~Lds~~  132 (177)
T KOG4579|consen  107 LRFNP-LNAEPRVIAPLIKLDMLDSPE  132 (177)
T ss_pred             cccCc-cccchHHHHHHHhHHHhcCCC
Confidence            77765 444455555566666665544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.68  E-value=0.17  Score=40.82  Aligned_cols=57  Identities=21%  Similarity=0.303  Sum_probs=20.1

Q ss_pred             cCCCCCCcEEeeeCCCCCCccc-ccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEEEec
Q 011033          241 LDNNTSLETINISGCENLKILP-SGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLRIY  301 (495)
Q Consensus       241 ~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~  301 (495)
                      |..+++|+.+.+..  .+..+. ..+.++++|+.+.+...  +..++. .+..+++++.+.+.
T Consensus         8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEET
T ss_pred             HhCCCCCCEEEECC--CeeEeChhhccccccccccccccc--ccccceeeeeccccccccccc
Confidence            34444555555442  122232 23444455555555432  333333 33344455555554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.52  E-value=0.0061  Score=52.16  Aligned_cols=61  Identities=11%  Similarity=0.166  Sum_probs=42.4

Q ss_pred             cccceeecccccCCccc--cccccCCCCccEEEEeCCCCCCCCCC--CCCCCCCcEEEEeCCCCC
Q 011033           52 CRLEYLRLSYCEGLVKL--PQSSLSLSSLREIEIYKCSSLVSFPE--VALPSKLKIIEIEGCDAL  112 (495)
Q Consensus        52 ~~L~~L~ls~~~~l~~l--~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~~  112 (495)
                      +.++.|.+.+|..+.+.  ...-+-.++|+.|+|++|+.+++-+-  +..+++|+.|.+.+-+.+
T Consensus       125 ~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  125 RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             chhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence            77777888888666532  22122467888889988888887654  677888888888875533

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.50  E-value=0.0089  Score=51.17  Aligned_cols=88  Identities=19%  Similarity=0.368  Sum_probs=51.9

Q ss_pred             ccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccccc-c
Q 011033          339 NLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-S  417 (495)
Q Consensus       339 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~  417 (495)
                      .++.++-+++......+    ..+.+++.++.|.+.+| ..++..-.+.   -+  ...++|+.|+|++|+.+++-.. +
T Consensus       102 ~IeaVDAsds~I~~eGl----e~L~~l~~i~~l~l~~c-k~~dD~~L~~---l~--~~~~~L~~L~lsgC~rIT~~GL~~  171 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGL----EHLRDLRSIKSLSLANC-KYFDDWCLER---LG--GLAPSLQDLDLSGCPRITDGGLAC  171 (221)
T ss_pred             eEEEEecCCchHHHHHH----HHHhccchhhhheeccc-cchhhHHHHH---hc--ccccchheeeccCCCeechhHHHH
Confidence            45666666665333222    24777777777777777 2232221111   00  1446788888888888777553 6


Q ss_pred             cccCCCCCeEeccCCCCCC
Q 011033          418 IVDLQNLTHLNLVDCPKLK  436 (495)
Q Consensus       418 ~~~~~~L~~L~l~~c~~l~  436 (495)
                      +..+++|+.|.+.+-+.+.
T Consensus       172 L~~lknLr~L~l~~l~~v~  190 (221)
T KOG3864|consen  172 LLKLKNLRRLHLYDLPYVA  190 (221)
T ss_pred             HHHhhhhHHHHhcCchhhh
Confidence            6777777777777754433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.76  E-value=0.031  Score=29.41  Aligned_cols=17  Identities=53%  Similarity=0.722  Sum_probs=8.1

Q ss_pred             cceeecccccCCcccccc
Q 011033           54 LEYLRLSYCEGLVKLPQS   71 (495)
Q Consensus        54 L~~L~ls~~~~l~~l~~~   71 (495)
                      |++|++++| .++.+|..
T Consensus         2 L~~Ldls~n-~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGN-NLTSIPSS   18 (22)
T ss_dssp             ESEEEETSS-EESEEGTT
T ss_pred             ccEEECCCC-cCEeCChh
Confidence            455555555 33344443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.08  E-value=0.062  Score=26.21  Aligned_cols=11  Identities=36%  Similarity=0.486  Sum_probs=4.2

Q ss_pred             CCCeEeccCCC
Q 011033          423 NLTHLNLVDCP  433 (495)
Q Consensus       423 ~L~~L~l~~c~  433 (495)
                      +|++|++++|+
T Consensus         2 ~L~~L~l~~n~   12 (17)
T PF13504_consen    2 NLRTLDLSNNR   12 (17)
T ss_dssp             T-SEEEETSS-
T ss_pred             ccCEEECCCCC
Confidence            34444444443

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=92.55  E-value=0.084  Score=27.74  Aligned_cols=20  Identities=25%  Similarity=0.506  Sum_probs=11.1

Q ss_pred             CCcEEEecCcccccccccccc
Q 011033          294 KLSKLRIYGCERLEALPKGLH  314 (495)
Q Consensus       294 ~L~~L~l~~~~~~~~~~~~l~  314 (495)
                      +|+.|++++| .++.+|+.++
T Consensus         1 ~L~~Ldls~n-~l~~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSSFS   20 (22)
T ss_dssp             TESEEEETSS-EESEEGTTTT
T ss_pred             CccEEECCCC-cCEeCChhhc
Confidence            3566666666 3445655443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=90.26  E-value=0.14  Score=50.81  Aligned_cols=69  Identities=19%  Similarity=0.212  Sum_probs=40.8

Q ss_pred             ccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCC--CCccEEEEeCCCCCCCC
Q 011033           17 DICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSL--SSLREIEIYKCSSLVSF   92 (495)
Q Consensus        17 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l--~~L~~L~l~~~~~l~~l   92 (495)
                      +++.+..+++++ +++.++..      +..+++..|+|..|+|++|........++.++  ..|++|.+.+|+..+++
T Consensus       216 n~p~i~sl~lsn-NrL~~Ld~------~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf  286 (585)
T KOG3763|consen  216 NFPEILSLSLSN-NRLYHLDA------LSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF  286 (585)
T ss_pred             CCcceeeeeccc-chhhchhh------hhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence            566777777777 56666533      66677777777777777762222211123322  34667777776555544

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=87.85  E-value=0.37  Score=26.46  Aligned_cols=15  Identities=33%  Similarity=0.720  Sum_probs=7.2

Q ss_pred             CCCCeEeccCCCCCC
Q 011033          422 QNLTHLNLVDCPKLK  436 (495)
Q Consensus       422 ~~L~~L~l~~c~~l~  436 (495)
                      ++|++|++++|++++
T Consensus         2 ~~L~~L~l~~C~~it   16 (26)
T smart00367        2 PNLRELDLSGCTNIT   16 (26)
T ss_pred             CCCCEeCCCCCCCcC
Confidence            445555555554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	495
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		4e-05

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 23/164 (14%)
Query: 187 LEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSL----FVWYCPKLESIAERLD 242
           L +L IR CP LT      ELP  L S +       L +L      W    + S+   + 
Sbjct: 152 LRELSIRACPELT------ELPEPLASTDASGEHQGLVNLQSLRLEWT--GIRSLPASIA 203
Query: 243 NNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPE--GGLPCAKLSKLRI 300
           N  +L+++ I     L  L   +H+L +L+E+++  C  L ++P   GG   A L +L +
Sbjct: 204 NLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR--APLKRLIL 260
Query: 301 YGCERLEALPKGLHNLTSLQQLTIGG-----ELPSLEEDGLPTN 339
             C  L  LP  +H LT L++L + G      LPSL    LP N
Sbjct: 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ-LPAN 303

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	495
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 90.7 bits (224), Expect = 3e-19
 Identities = 92/533 (17%), Positives = 176/533 (33%), Gaps = 135/533 (25%)

Query: 1   MKEQTYIWKSHNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLS 60
           M  + YI +  + L  D     +  ++       L        +Q L EL    + + + 
Sbjct: 107 MMTRMYI-EQRDRLYNDNQVFAKYNVSRLQPYLKL--------RQALLELR-PAKNVLI- 155

Query: 61  YCEGLVKLPQSSLSLSSLREIE--------IY-----KCSSLVSFPEV--ALPSKLKIIE 105
             +G++   ++ ++L      +        I+      C+S  +  E+   L  ++    
Sbjct: 156 --DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 106 IEGCDALKSLPEAWMCDTNSSLETLYIE--HCRTLTYLAGVQLPRSLKRLDILSCDNIRT 163
               D   ++    +    + L  L     +   L  L  VQ  ++    ++ SC   + 
Sbjct: 214 TSRSDHSSNIKLR-IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL-SC---KI 268

Query: 164 LTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLES---LEVGNLP 220
           L      Q +   S+      SL                + +E+ + L         +LP
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSM---------TLTPDEVKSLLLKYLDCRPQDLP 319

Query: 221 PSLKSLFVWYCPKLES-IAERL-DNNTSLETINISGCENL-KILPSGLHNLGQLQEIEIW 277
             + +      P+  S IAE + D   + +      C+ L  I+ S L+    L+  E  
Sbjct: 320 REVLTTN----PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV---LEPAEYR 372

Query: 278 EC-ENLVSFPEG-GLPCAKLSKL---RIYGCERLEALPKGLHNLTSLQQ----LTIGGEL 328
           +  + L  FP    +P   LS +    I     +      LH  + +++     TI   +
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV--NKLHKYSLVEKQPKESTIS--I 428

Query: 329 PSL--EEDGLPTNLHSLHIWGNMEIWKSMIER---GRGFHR------------FSSL-RH 370
           PS+  E      N ++LH        +S+++     + F              +S +  H
Sbjct: 429 PSIYLELKVKLENEYALH--------RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480

Query: 371 LTIEGCDDDMVSFP--------LEDK--RLGTALPLPASLTSLRIVDF-----------P 409
           L      + M  F         LE K     TA     S+ +  +              P
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT-LQQLKFYKPYICDNDP 539

Query: 410 NLERLSSSIVD-LQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCPLMEEK 461
             ERL ++I+D L  +   NL+              + LL+++     LM E 
Sbjct: 540 KYERLVNAILDFLPKIEE-NLICSKY----------TDLLRIA-----LMAED 576

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.8 bits (208), Expect = 6e-18
 Identities = 61/306 (19%), Positives = 96/306 (31%), Gaps = 35/306 (11%)

Query: 148 RSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNEL 207
              + L       +R     + +       +  R       +    + P +    +   L
Sbjct: 12  SGRENLYFQGSTALRPY--HDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETR-TGRAL 68

Query: 208 PATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHN 267
            AT + LE    P    +L +     L    ++    + L+ + I     L  LP  +  
Sbjct: 69  KATADLLEDATQP-GRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQ 125

Query: 268 LGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGL---------HNLTS 318
              L+ + +     L + P       +L +L I  C  L  LP+ L           L +
Sbjct: 126 FAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184

Query: 319 LQQLTIGG----ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIE 374
           LQ L +       LP         NL SL I  +      +   G   H    L  L + 
Sbjct: 185 LQSLRLEWTGIRSLP--ASIANLQNLKSLKIRNS-----PLSALGPAIHHLPKLEELDLR 237

Query: 375 GCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPK 434
           GC   + ++P             A L  L + D  NL  L   I  L  L  L+L  C  
Sbjct: 238 GCTA-LRNYPPIFGGR-------APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289

Query: 435 LKYFPE 440
           L   P 
Sbjct: 290 LSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.4 bits (194), Expect = 4e-16
 Identities = 62/389 (15%), Positives = 105/389 (26%), Gaps = 101/389 (25%)

Query: 54  LEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALK 113
            E L       L                +  +  S          S    IE     ALK
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----SNNPQIETRTGRALK 69

Query: 114 SLPEAWMCDTNSSLETLYIEHCRTLTYL-AGVQLPRSLKRLDILSCDNIRTLTVEEGIQS 172
           +  +     T      L +     L            L+ +  +    +  L       +
Sbjct: 70  ATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMT-IDAAGLMELPDTMQQFA 127

Query: 173 SSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCP 232
                         LE L +     L        LPA++ SL        L+ L +  CP
Sbjct: 128 G-------------LETLTLARN-PLR------ALPASIASLN------RLRELSIRACP 161

Query: 233 KLESI---------AERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLV 283
           +L  +         +       +L+++ +     ++ LP+ + NL  L+ ++I     L 
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNS-PLS 219

Query: 284 SFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGGELPSLEEDGLPTNLHSL 343
           +         KL +L + GC  L   P        L++L +     +L    LP ++H L
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC-SNLLT--LPLDIHRL 276

Query: 344 HIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSL 403
                                 + L  L + GC                           
Sbjct: 277 ----------------------TQLEKLDLRGC--------------------------- 287

Query: 404 RIVDFPNLERLSSSIVDLQNLTHLNLVDC 432
                 NL RL S I  L     + +   
Sbjct: 288 -----VNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 72.3 bits (178), Expect = 4e-14
 Identities = 60/353 (16%), Positives = 107/353 (30%), Gaps = 73/353 (20%)

Query: 20  SLRRLTITSCPKLQSLVAE-----EEKDQQQQLCELSCRLEYLR-----LSYCEGLVKLP 69
               L       L+             +  +     + R                L    
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATA 72

Query: 70  QS--SLSLSSLREIEIYKCSSLVSFP-EVALPSKLKIIEIEGCDALKSLPEAWMCDTNSS 126
                 +      +E+     L  FP +    S L+ + I+    L  LP+         
Sbjct: 73  DLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAG-- 128

Query: 127 LETLYIEHCRTLTYL-AGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSS 185
           LETL +     L  L A +     L+ L I +C  +  L   E + S+ +S  ++   + 
Sbjct: 129 LETLTLARNP-LRALPASIASLNRLRELSIRACPELTELP--EPLASTDASGEHQGLVN- 184

Query: 186 LLEKLEIRDCPSLTCIFSQNELPATLESL------------------EVGNLPPSLKSLF 227
            L+ L +     +        LPA++ +L                   + +LP  L+ L 
Sbjct: 185 -LQSLRLEWT-GIR------SLPASIANLQNLKSLKIRNSPLSALGPAIHHLP-KLEELD 235

Query: 228 VWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPE 287
           +  C  L +          L+ + +  C NL  LP  +H L QL++              
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK-------------- 281

Query: 288 GGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGGELPSLEEDGLPTNL 340
                     L + GC  L  LP  +  L +   + +   L +  +   P   
Sbjct: 282 ----------LDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.4 bits (155), Expect = 3e-11
 Identities = 37/238 (15%), Positives = 66/238 (27%), Gaps = 46/238 (19%)

Query: 234 LESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPE------ 287
           + S      +++  E +   G   L+     L    +    +     +            
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60

Query: 288 ---------------GGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSL 331
                                    L +     L   P     L+ LQ +TI    L  L
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMEL 119

Query: 332 -EEDGLPTNLHSLHIWGNM------EIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFP 384
            +       L +L +  N        I              + LR L+I  C  ++   P
Sbjct: 120 PDTMQQFAGLETLTLARNPLRALPASIAS-----------LNRLRELSIRAC-PELTELP 167

Query: 385 LEDKRLGTALPLPASLTSLRI--VDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPE 440
                   A      L +L+   +++  +  L +SI +LQNL  L + +   L     
Sbjct: 168 EPLAST-DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGP 223

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 44/228 (19%), Positives = 73/228 (32%), Gaps = 43/228 (18%)

Query: 54  LEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALK 113
           LE L L+    L  LP S  SL+ LRE+ I  C  L   PE                 L 
Sbjct: 129 LETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPE----PLASTDASGEHQGLV 183

Query: 114 SLPEAWMCDTN-----------SSLETLYIEHCRTLTYL-AGVQLPRSLKRLDILSCDNI 161
           +L    +  T             +L++L I +   L+ L   +     L+ LD+  C  +
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTAL 242

Query: 162 RTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPP 221
           R           +            L++L ++DC +L        LP  +  L       
Sbjct: 243 RNYP--PIFGGRAP-----------LKRLILKDCSNLL------TLPLDIHRLT------ 277

Query: 222 SLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLG 269
            L+ L +  C  L  +   +    +   I +      ++         
Sbjct: 278 QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 60.7 bits (147), Expect = 5e-10
 Identities = 56/451 (12%), Positives = 123/451 (27%), Gaps = 66/451 (14%)

Query: 53  RLEYLRLSYCEGL--VKLPQSSLSLSSLREIEIYKCS-------SLVSFPEVALPSKLKI 103
            LE L+L  C G     L         ++ + + + S        L    +     ++  
Sbjct: 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLN 198

Query: 104 IEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIR- 162
             +     +       +     SL ++ +     L  +   +   +L+     S +    
Sbjct: 199 FYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIG 258

Query: 163 -TLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPP 221
                   +           Y       +       +  +     L  T +   +    P
Sbjct: 259 MPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP 318

Query: 222 SLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILP--------SGLHNLGQ--- 270
           +L+ L          +         L+ + I    + + +          GL  L Q   
Sbjct: 319 NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ 378

Query: 271 -LQEIEIWECENL--VSFPEGGLPCAKLSKLRIYGCERL---------EALPKGLHNLTS 318
            L+ + +    ++   S    G     L   R+   +R            +   L     
Sbjct: 379 ELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKK 437

Query: 319 LQQLTIGGELPSLEEDGL------PTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLT 372
           L++         L + GL        N+  + +    E  + ++E  RG      L+ L 
Sbjct: 438 LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPN---LQKLE 494

Query: 373 IEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDL---------QN 423
           + GC          ++ +  A+     L SLR +    ++   +S+             N
Sbjct: 495 MRGC-------CFSERAIAAAV---TKLPSLRYLW---VQGYRASMTGQDLMQMARPYWN 541

Query: 424 LTHLNLVDCPKLKYFPEKGLPSSLLQLSIYR 454
           +  +     P++    E         +  Y 
Sbjct: 542 IELIPSRRVPEVNQQGEIREMEHPAHILAYY 572

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 56.5 bits (136), Expect = 1e-08
 Identities = 44/333 (13%), Positives = 97/333 (29%), Gaps = 33/333 (9%)

Query: 118 AWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSS 177
            W    + + E + +  C T T     +   +L+ L +          +         + 
Sbjct: 43  RWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTP 102

Query: 178 SNRRYTSSL--LEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKL- 234
                +++L  L+ +  R                 L+ L        L++L +  C    
Sbjct: 103 WVTEISNNLRQLKSVHFRRM---------IVSDLDLDRLAKARA-DDLETLKLDKCSGFT 152

Query: 235 -ESIAERLDNNTSLETINISGCENLKILPSGLHNLGQ----LQEIEIWECE----NLVSF 285
            + +   + +   ++T+ +      +     LH L Q    L+ +  +  E    +    
Sbjct: 153 TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDL 212

Query: 286 PEGGLPCAKLSKLRIYGCERLE--ALPKGLHNLTSLQQLTIGGELPSLEEDGLPTNLHSL 343
                 C  L  +++   E LE     K   NL      ++  ++   E+         L
Sbjct: 213 ETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKL 272

Query: 344 HIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSL 403
              G   +  + +     F   + +R L +           LE +   T +    +L  L
Sbjct: 273 CRLGLSYMGPNEMP--ILFPFAAQIRKLDLLYA-------LLETEDHCTLIQKCPNLEVL 323

Query: 404 RIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLK 436
              +      L       + L  L +      +
Sbjct: 324 ETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQ 356

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 60.3 bits (146), Expect = 7e-10
 Identities = 53/365 (14%), Positives = 106/365 (29%), Gaps = 46/365 (12%)

Query: 118 AWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSS 177
           +W          ++I +C  ++    ++    ++ +++    +            +    
Sbjct: 36  SWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADF--------NLVPD 87

Query: 178 SNRRYTSSLLEKLEIRDCPSLTCI-FSQNELP-ATLESLEVGNLPPSLKSLFVWYCPKL- 234
               Y    +E +       L  I   +  +    LE +       + K L +  C    
Sbjct: 88  GWGGYVYPWIEAM-SSSYTWLEEIRLKRMVVTDDCLELIAKSF--KNFKVLVLSSCEGFS 144

Query: 235 -ESIAERLDNNTSLETINISGCENLKILPSGLHNLG----QLQEIEIWECENLVSFPEGG 289
            + +A       +L+ +++   +   +    L +       L  + I    + VSF    
Sbjct: 145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF--SA 202

Query: 290 LP-----CAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGGELPSLEEDGLP------- 337
           L      C  L  L++     LE L   L     L++L  GG    +  D          
Sbjct: 203 LERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262

Query: 338 --TNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALP 395
               L  L   G  +   + +     +   S L  L +           ++   L   L 
Sbjct: 263 GCKELRCLS--GFWDAVPAYLPAV--YSVCSRLTTLNLSYA-------TVQSYDLVKLLC 311

Query: 396 LPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRC 455
               L  L ++D+     L       ++L  L +         P   L    L      C
Sbjct: 312 QCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGC 371

Query: 456 PLMEE 460
           P +E 
Sbjct: 372 PKLES 376

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 76/499 (15%), Positives = 158/499 (31%), Gaps = 55/499 (11%)

Query: 14  LLQDICSLRRLTITSCPKL--QSLVAEEEKDQQQQLCELSCR----LEYLRLSYC----E 63
           +++    +R + +   P     +LV +          E        LE +RL       +
Sbjct: 61  VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD 120

Query: 64  GLVKLPQSSLSLSSLREIEIYKCSSL--VSFPEVALP-SKLKIIEIEGCDALKSLPEAW- 119
            L  +   + S  + + + +  C          +A     LK +++   D          
Sbjct: 121 CLELI---AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLS 177

Query: 120 -MCDTNSSLETLYIEHCRTLTYLAGVQL----PRSLKRLDILSCDNIRTLTVE----EGI 170
              DT +SL +L I    +    + ++       +LK L +     +  L         +
Sbjct: 178 HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQL 237

Query: 171 QSSSSSSSNRRYTSSLLEKLE--IRDCPSLTCI-FSQNELPATLESLEVGNLPPSLKSLF 227
           +   +          +   L   +  C  L C+    + +PA L ++   ++   L +L 
Sbjct: 238 EELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV--YSVCSRLTTLN 295

Query: 228 VWYCPKL-ESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFP 286
           + Y       + + L     L+ + +        L         L+E+ ++  E  V  P
Sbjct: 296 LSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEP 355

Query: 287 EGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGGELPSLEEDGLPTNLHSLHIW 346
              L    L  +   GC +LE++      +T+   +TI    P++    L         +
Sbjct: 356 NVALTEQGLVSV-SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY 414

Query: 347 GNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIV 406
             +E        G        LR L++ G         L DK           +  L + 
Sbjct: 415 LTLEPLDIGF--GAIVEHCKDLRRLSLSGL--------LTDKVFEYIGTYAKKMEMLSVA 464

Query: 407 DFPN----LERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPS--SLLQLSIYRCPLMEE 460
              +    +  + S      +L  L + DCP              ++  L +  C +   
Sbjct: 465 FAGDSDLGMHHVLSG---CDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFG 521

Query: 461 KCRKDGGLLTHIPSVQIDL 479
            C+    L   +P + +++
Sbjct: 522 ACKL---LGQKMPKLNVEV 537

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 7e-09
 Identities = 50/486 (10%), Positives = 139/486 (28%), Gaps = 83/486 (17%)

Query: 10  SHNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCE------ 63
           S     +     +++ +    +L      ++   +    +   +   + L   +      
Sbjct: 376 SEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN 435

Query: 64  GLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDT 123
            +  + ++   L+ L+ I          F    +    +    +     ++   +W   +
Sbjct: 436 RITFISKAIQRLTKLQIIYFANSP----FTYDNIAVDWEDANSDYAKQYENEELSW---S 488

Query: 124 N-SSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNR 180
           N   L  + + +C  +T L      LP  L+ L+ ++C+   +    +   +  +   + 
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLP-ELQSLN-IACNRGISAAQLKADWTRLADDEDT 546

Query: 181 RYT-----------SSLLEKLEIRDCPSLTCI-FSQNELPATLESLEVGNLPPSLKSLFV 228
                                 ++    L  +    N++   LE+   G     L  L +
Sbjct: 547 GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-RHLEAF--GTNV-KLTDLKL 602

Query: 229 WYCPKLESI-AERLDNNTSLETINISGCENLKILPS--GLHNLGQLQEI-----EIWECE 280
            Y  ++E I  +       +E +  S    LK +P+     ++  +  +     +I    
Sbjct: 603 DYN-QIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEG 660

Query: 281 NLVSFPEGGLPCAKLSKLRIYGCERLEALPKG-LHNLTSLQQLTIGG----ELPSLEEDG 335
             +S           S + +     ++  P       + +  + +       +P      
Sbjct: 661 RNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP 719

Query: 336 LP------TNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKR 389
                     L ++ +  N ++  + +           L ++ +                
Sbjct: 720 KDGNYKNTYLLTTIDLRFN-KL--TSLSDDFRATTLPYLSNMDVSYN------------C 764

Query: 390 LGTALPL-PASLTSLRIVDFPNLERLSS---------SIVDLQNLTHLNLVDCPKLKYFP 439
             ++ P  P + + L+     +                I    +L  L +     ++   
Sbjct: 765 F-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVD 822

Query: 440 EKGLPS 445
           EK  P 
Sbjct: 823 EKLTPQ 828

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.3 bits (133), Expect = 4e-08
 Identities = 52/353 (14%), Positives = 101/353 (28%), Gaps = 66/353 (18%)

Query: 54  LEYLRLSYCEGLVKLPQS--------SLSLSS--LREIEIYKCSSLVSFPEVALPSKLKI 103
           L  + L  C  + +LP          SL+++          K        +     K++I
Sbjct: 493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552

Query: 104 IEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRT 163
             +   + L+  P +        L  L   H + + +L        L  L  L  + I  
Sbjct: 553 FYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLK-LDYNQIEE 609

Query: 164 LTVEEGIQSSS----SSSSNRRYTSSLLEKLEIRDCPSLTCI-FSQNEL----PATLESL 214
           +  +    +        S N+     +      +    +  + FS N++         S+
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNK--LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667

Query: 215 EVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGC-------ENLKILPSGLHN 267
           +      +  ++ + Y    +   E     + + TI +S          +LK       N
Sbjct: 668 DDYKGI-NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726

Query: 268 LGQLQEIEIWECENLVSFPEGGLPCA--KLSKLRIYGCERLEALPKGLHNLTSLQQLTIG 325
              L  I++     L S  +         LS + +       + P    N + L+   I 
Sbjct: 727 TYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIR 784

Query: 326 ------------------GELPSLEE------------DGLPTNLHSLHIWGN 348
                                PSL +            + L   L+ L I  N
Sbjct: 785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADN 837

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.9 bits (132), Expect = 4e-08
 Identities = 56/375 (14%), Positives = 101/375 (26%), Gaps = 77/375 (20%)

Query: 145 QLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKL-----EIRDCPSLT 199
              + L   D L  D I      + I+  S  S       +L  ++      I+    L 
Sbjct: 393 DYDQRLNLSD-LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQ 451

Query: 200 CIF-SQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENL 258
            I+ + +       ++         +     Y  + E+      N   L  + +  C N+
Sbjct: 452 IIYFANSPFTYDNIAV-------DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504

Query: 259 KILPSGLHNLGQLQEIEIW---------ECENLVSFPEGGLPCAKLSKLRIYGCERLEAL 309
             LP  L++L +LQ + I             +     +      K+    +     LE  
Sbjct: 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEF 563

Query: 310 PK--GLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGN------MEIWKSM----- 355
           P    L  +  L  L     ++  LE  G    L  L +  N       +          
Sbjct: 564 PASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEG 623

Query: 356 ----------IERGRGFHRFSSLRHL------------TIEGCDDDMVSFPLEDKRLG-- 391
                     I           +  +             I    DD          L   
Sbjct: 624 LGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683

Query: 392 --TALP--LPASLTSLRIVDFPN----------LERLSSSIVDLQNLTHLNLVDCPKLKY 437
                P  L A+ + +  +   N          L+    +  +   LT ++L    KL  
Sbjct: 684 EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTS 742

Query: 438 FPEKGLPSSLLQLSI 452
             +    ++L  LS 
Sbjct: 743 LSDDFRATTLPYLSN 757

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.9 bits (106), Expect = 5e-05
 Identities = 28/211 (13%), Positives = 53/211 (25%), Gaps = 31/211 (14%)

Query: 241 LDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRI 300
           LDNN  +  ++++G      +P  +  L +L+ +        VS    G           
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 301 YGCE-RLEALPKGLHNLTSLQQLTI----------GGELPSLEEDGLPTNLHSLHIWGNM 349
                R+      L     L    +             +       L             
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT 438

Query: 350 EIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFP 409
            I        +   R + L+ +                    T   +             
Sbjct: 439 FI-------SKAIQRLTKLQIIYFANS------------PF-TYDNIAVDWEDANSDYAK 478

Query: 410 NLERLSSSIVDLQNLTHLNLVDCPKLKYFPE 440
             E    S  +L++LT + L +CP +   P+
Sbjct: 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPD 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 59/426 (13%), Positives = 129/426 (30%), Gaps = 50/426 (11%)

Query: 53  RLEYLRLSYCEGLVKLPQSSL-SLSSLREIEIYKCSSLVSFPEVALP--SKLKIIEIEGC 109
            L+ L L     +  +   +  SL SL  +++     L S         S LK + + G 
Sbjct: 51  NLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGN 108

Query: 110 DALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEG 169
              ++L    +    ++L+TL I +  T + +  +     L  L+ L    +     +  
Sbjct: 109 P-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF-AGLTSLNELEIKALSLRNYQSQ 166

Query: 170 IQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCI--FSQNELPATLESLEVGNLPPSLKSLF 227
              S             +  L +        +     + L  ++  LE+ +   +L    
Sbjct: 167 SLKSIRD----------IHHLTLHLS-ESAFLLEIFADILS-SVRYLELRDT--NLARFQ 212

Query: 228 VWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQL-------QEIEIWECE 280
               P  E  +           +       L  L   +  L ++         +  +   
Sbjct: 213 FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS 272

Query: 281 NLVSFPEGG-LPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG----ELPSLEEDG 335
                 E G +    + +L I        L      L  ++++T+       +P      
Sbjct: 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQH 332

Query: 336 LPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALP 395
           L  +L  L +  N  + +  ++       + SL+ L +              + +     
Sbjct: 333 LK-SLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQN---------HLRSMQKTGE 381

Query: 396 LPASLTSLRIVDFPN--LERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIY 453
           +  +L +L  +D        +  S    + +  LNL     ++      +P +L  L + 
Sbjct: 382 ILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST-GIRVVKT-CIPQTLEVLDVS 439

Query: 454 RCPLME 459
              L  
Sbjct: 440 NNNLDS 445

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 62/344 (18%), Positives = 109/344 (31%), Gaps = 34/344 (9%)

Query: 18  ICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSS 77
           +  L          L+      E    + LC+++  ++  RL+Y             L++
Sbjct: 233 VHRLILGEFKDERNLEIF----EPSIMEGLCDVT--IDEFRLTYTNDFSDDIVKFHCLAN 286

Query: 78  LREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRT 137
           +  + +   S +    +V    K + + I  C  LK  P   +      L++L +   + 
Sbjct: 287 VSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRCQ-LKQFPTLDL----PFLKSLTLTMNKG 340

Query: 138 LTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSS------SSNRRYTSSLLEKLE 191
                 V LP SL  LD LS + +            ++S      S N     S      
Sbjct: 341 SISFKKVALP-SLSYLD-LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA----N 394

Query: 192 IRDCPSLTCI-FSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETI 250
                 L  + F  + L    E     +L   L  L + Y              TSL T+
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLE-KLLYLDISYTNTKIDFDGIFLGLTSLNTL 453

Query: 251 NISGCENLKILPSG-LHNLGQLQEIEIWECENLVSFPEGGLP-CAKLSKLRIYGCERLEA 308
            ++G        S    N   L  +++ +C  L     G      +L  L +     L  
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHN-NLLF 511

Query: 309 LPKG-LHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGN 348
           L     + L SL  L      + + +      P +L   ++  N
Sbjct: 512 LDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 76/427 (17%), Positives = 141/427 (33%), Gaps = 64/427 (14%)

Query: 54  LEYLRLSYCEGLVKLPQSSLS-LSSLREIEIYKCSSLVSFPEVALP--SKLKIIEIEGCD 110
            + + LS+   L  L   S S  S L+ +++ +C  + +  + A      L  + + G  
Sbjct: 34  TKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNP 91

Query: 111 ALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLP--RSLKRLDILSCDNIRTLTVEE 168
            ++S          +SLE L     + L  L    +    +LK+L+ ++ + I +  +  
Sbjct: 92  -IQSFSPGSFSG-LTSLENLVAVETK-LASLESFPIGQLITLKKLN-VAHNFIHSCKLPA 147

Query: 169 GIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFV 228
              + ++           L  +++     +  I         L+ L     P    SL +
Sbjct: 148 YFSNLTN-----------LVHVDLSYN-YIQTI-----TVNDLQFLR--ENPQVNLSLDM 188

Query: 229 WYCPKLESIAERLDNNTSLETINISGCENL-KILPSGLHNLGQLQEIEIWECE-----NL 282
              P ++ I ++      L  + + G  N   I+ + L NL  L    +   E     NL
Sbjct: 189 SLNP-IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247

Query: 283 VSFPEG---GLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEEDGLPT 338
             F      GL    + + R+             H L ++  +++ G  +  LE+     
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF 307

Query: 339 NLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGC--DDDMVSFPLED--------- 387
              SL I            +         L+ LT+             L           
Sbjct: 308 KWQSLSIIRCQL-------KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN 360

Query: 388 --KRLGTALPLPASLTSLRIVD--FPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGL 443
                G          SLR +D  F     +S++ + L+ L HL+      LK   E   
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS-TLKRVTEFSA 419

Query: 444 PSSLLQL 450
             SL +L
Sbjct: 420 FLSLEKL 426

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 67/437 (15%), Positives = 126/437 (28%), Gaps = 77/437 (17%)

Query: 45  QQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPS----- 99
           Q L E       L +S    +  +   +     L E+ +    +  +  +  L +     
Sbjct: 174 QFLRENPQVNLSLDMSLNP-IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLH 232

Query: 100 --KLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLP----RSLKRL 153
             +L + E +    L+             L  + I+  R LTY             L  +
Sbjct: 233 VHRLILGEFKDERNLEIFEP----SIMEGLCDVTIDEFR-LTYTNDFSDDIVKFHCLANV 287

Query: 154 DILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCI-FSQNELPATLE 212
             +S   +    +E+  +     S +       L++    D P L  +  + N+      
Sbjct: 288 SAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQ--LKQFPTLDLPFLKSLTLTMNKG---SI 342

Query: 213 SLEVGNLPPSLKSLFVWYCP--KLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQ 270
           S +   LP SL  L +           +       SL  +++S      I+ +    L +
Sbjct: 343 SFKKVALP-SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEE 400

Query: 271 LQEIEIWECENLVSFPEGGL--PCAKLSKLRIYGCERLEALPKG-LHNLTSLQQLTIGGE 327
           LQ ++      L    E        KL  L I      +    G    LTSL  L + G 
Sbjct: 401 LQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYT-NTKIDFDGIFLGLTSLNTLKMAG- 457

Query: 328 LPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLED 387
                      N    +   N+            F   ++L  L +  C   +       
Sbjct: 458 -----------NSFKDNTLSNV------------FANTTNLTFLDLSKCQ--LEQISWG- 491

Query: 388 KRLGTALPLPASLTSL-----RIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEK- 441
                       L  L      ++   +     S    L +L+ L+     +++      
Sbjct: 492 -----VFDTLHRLQLLNMSHNNLLFLDS-----SHYNQLYSLSTLDCSFN-RIETSKGIL 540

Query: 442 -GLPSSLLQLSIYRCPL 457
              P SL   ++    +
Sbjct: 541 QHFPKSLAFFNLTNNSV 557

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 60/481 (12%), Positives = 149/481 (30%), Gaps = 84/481 (17%)

Query: 20  SLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLR 79
            L +  I S P+ +S+         ++   ++ +   +       +  + ++ + L+ LR
Sbjct: 160 DLIKDCINSDPQQKSI---------KKSSRITLKDTQIGQLSNN-ITFVSKAVMRLTKLR 209

Query: 80  EIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTN-SSLETLYIEHCRTL 138
           +  +        F    +    +    E     K+    W    N   L  + + +C  L
Sbjct: 210 QFYMGNSP----FVAENICEAWENENSEYAQQYKTEDLKW---DNLKDLTDVEVYNCPNL 262

Query: 139 TYL-AGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSL------LEKL- 190
           T L   ++    ++ ++ ++C+   +    +    + + +        +      L+   
Sbjct: 263 TKLPTFLKALPEMQLIN-VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321

Query: 191 ---EIRDCPSLTCIF-SQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNN-T 245
               ++    L  +    N+L   L +   G+    L SL + Y  ++  I         
Sbjct: 322 VETSLQKMKKLGMLECLYNQLEGKLPAF--GSEI-KLASLNLAYN-QITEIPANFCGFTE 377

Query: 246 SLETINISGCENLKILPS--GLHNLGQLQEIEIW-------ECENLVSFPEGGLPCAKLS 296
            +E ++ +    LK +P+     ++  +  I+         + +N             +S
Sbjct: 378 QVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436

Query: 297 KLRIYGCERLEALPKG-LHNLTSLQQLTIGG----ELPSLEEDGLP------TNLHSLHI 345
            + +    ++   PK      + L  + + G    E+P                L S+ +
Sbjct: 437 SINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

Query: 346 WGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRI 405
             N  +  + +           L  + +         FP +          P + ++L+ 
Sbjct: 496 RFNK-L--TKLSDDFRATTLPYLVGIDLSYNS--FSKFPTQ----------PLNSSTLKG 540

Query: 406 VDFPNLERLSS---------SIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCP 456
               N                I    +LT L +     ++   E  +  ++  L I   P
Sbjct: 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNE-KITPNISVLDIKDNP 598

Query: 457 L 457
            
Sbjct: 599 N 599

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 27/247 (10%), Positives = 73/247 (29%), Gaps = 33/247 (13%)

Query: 241 LDNNTSLETINISGCENLKILPSGLHNLGQLQEIEI----WECENLVSFPEGGLPCAKLS 296
           L++N  +  +++ G      +P  +  L +L+ + +     +    +  P+G        
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 297 KLRIYGCERLEALPKGLH--NLTSLQQLTIGG---ELPSLEEDGLPTNLHSLHIWGNM-- 349
           + +       +         + + L +  I     +    +   +      +    N   
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 350 EIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFP 409
            + K+         R + LR   +                   A  +  +  +       
Sbjct: 197 FVSKA-------VMRLTKLRQFYMGNSPF-------------VAENICEAWENENSEYAQ 236

Query: 410 NLERLSSSIVDLQNLTHLNLVDCPKLKYFPEK-GLPSSLLQLSIYRCPLME-EKCRKDGG 467
             +       +L++LT + + +CP L   P        +  +++     +  E+ + D  
Sbjct: 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296

Query: 468 LLTHIPS 474
            L   P 
Sbjct: 297 ALADAPV 303

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 64/411 (15%), Positives = 126/411 (30%), Gaps = 74/411 (18%)

Query: 53  RLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDAL 112
            L  L       +  +      L+ L ++     + + +         L  +  +    L
Sbjct: 43  TLTSLDCHNS-SITDMTGIE-KLTGLTKLICTSNN-ITTLDLSQNT-NLTYLACDSNK-L 97

Query: 113 KSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQS 172
            +L         + L  L  +  + LT L   Q P  L  L+  + + +  + V    Q 
Sbjct: 98  TNLD----VTPLTKLTYLNCDTNK-LTKLDVSQNP-LLTYLN-CARNTLTEIDVSHNTQL 150

Query: 173 SSSSSSNRRYTSSLLEKLEIRDCPSLTCI-FSQNELPATLESLEVGNLPPSLKSLFVWYC 231
           +       +     + KL++     LT +  S N++      L+V      L  L     
Sbjct: 151 TELDCHLNK----KITKLDVTPQTQLTTLDCSFNKI----TELDVSQNK-LLNRLNCDTN 201

Query: 232 PKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLP 291
             +  +   L+ N  L  ++ S    L  +   +  L QL   +      L       L 
Sbjct: 202 -NITKLD--LNQNIQLTFLDCSSN-KLTEID--VTPLTQLTYFDCSVN-PLTELDVSTLS 254

Query: 292 CAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG--ELPSLEEDGLPTNLHSLHIWGNM 349
             KL+ L     + L  +   L + T L      G  ++  L+     T L+ L      
Sbjct: 255 --KLTTLHCIQTD-LLEID--LTHNTQLIYFQAEGCRKIKELDVTHN-TQLYLLDCQAA- 307

Query: 350 EIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFP 409
            I  + ++      +   L +L +                          LT L +    
Sbjct: 308 GI--TELD----LSQNPKLVYLYLNNT----------------------ELTELDVSHNT 339

Query: 410 NLERLS------SSIVDLQNLTHLNLVDC--PKLKYFPEKGLPSSLLQLSI 452
            L+ LS           +  +  LN       +    P++ L ++ L +++
Sbjct: 340 KLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAV 390

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 58/320 (18%), Positives = 107/320 (33%), Gaps = 42/320 (13%)

Query: 124 NSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRY- 182
            ++L +L   +   +T + G++    L +L   + +NI TL +        S ++N  Y 
Sbjct: 41  LATLTSLDCHNSS-ITDMTGIEKLTGLTKLI-CTSNNITTLDL--------SQNTNLTYL 90

Query: 183 --TSSLLEKLEIRDCPSLTCI-FSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAE 239
              S+ L  L++     LT +    N+L      L+V   P  L  L       L  I  
Sbjct: 91  ACDSNKLTNLDVTPLTKLTYLNCDTNKL----TKLDVSQNP-LLTYLNCARN-TLTEID- 143

Query: 240 RLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLR 299
            + +NT L  ++    + +  L   +    QL  ++      +            L++L 
Sbjct: 144 -VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFN-KITELDVSQNK--LLNRLN 197

Query: 300 IYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIER 358
                 +  L   L+    L  L     +L  ++   L T L       N     + ++ 
Sbjct: 198 CDTN-NITKLD--LNQNIQLTFLDCSSNKLTEIDVTPL-TQLTYFDCSVNP---LTELD- 249

Query: 359 GRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSI 418
                  S L  L     D  ++   L                 ++ +D  +  +L    
Sbjct: 250 ---VSTLSKLTTLHCIQTD--LLEIDLTHNTQLIYFQA-EGCRKIKELDVTHNTQLYLLD 303

Query: 419 VDLQNLTHLNLVDCPKLKYF 438
                +T L+L   PKL Y 
Sbjct: 304 CQAAGITELDLSQNPKLVYL 323

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 41/246 (16%), Positives = 84/246 (34%), Gaps = 41/246 (16%)

Query: 19  CSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSL 78
            +L  + ++   +L  L            C L+ ++  L ++    L  L     S + +
Sbjct: 137 NTLTEIDVSHNTQLTEL-----------DCHLNKKITKLDVTPQTQLTTL---DCSFNKI 182

Query: 79  REIEIYKCSSLVSFPEVALPS-KLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRT 137
            E+++ +   L     +   +  +  +++     L  L     C +N  L  + +     
Sbjct: 183 TELDVSQNKLLN---RLNCDTNNITKLDLNQNIQLTFL----DCSSNK-LTEIDVTPLTQ 234

Query: 138 LTYLAGVQLPR-SLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCP 196
           LTY          L  LD+ +   + TL   +        + N     + L   +   C 
Sbjct: 235 LTYF---DCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHN-----TQLIYFQAEGCR 286

Query: 197 SLTCI-FSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGC 255
            +  +  + N     L  L+       +  L +   PKL  +   L+N   L  +++S  
Sbjct: 287 KIKELDVTHNTQ---LYLLDCQAA--GITELDLSQNPKLVYL--YLNNT-ELTELDVSHN 338

Query: 256 ENLKIL 261
             LK L
Sbjct: 339 TKLKSL 344

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 72/303 (23%), Positives = 111/303 (36%), Gaps = 59/303 (19%)

Query: 54  LEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALK 113
           L+ + +     L KLP       SL  I       L   PE+     L  I  +    LK
Sbjct: 155 LKIIDVDNNS-LKKLPDL---PPSLEFIAAGNNQ-LEELPELQNLPFLTAIYADNNS-LK 208

Query: 114 SLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSS 173
            LP+        SLE++   +   L  L  +Q    L  +     + ++TL   +   S 
Sbjct: 209 KLPDLP-----LSLESIVAGNNI-LEELPELQNLPFLTTIY-ADNNLLKTL--PDLPPS- 258

Query: 174 SSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGN--------LPPSLKS 225
                        LE L +RD   LT +    ELP +L  L+V          LPP+L  
Sbjct: 259 -------------LEALNVRDN-YLTDL---PELPQSLTFLDVSENIFSGLSELPPNLYY 301

Query: 226 LFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSF 285
           L      ++ S+ +      SLE +N+S    L  LP+      +L+ +      +L   
Sbjct: 302 LNASSN-EIRSLCDLP---PSLEELNVSNN-KLIELPA---LPPRLERLIASFN-HLAEV 352

Query: 286 PEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGGELPSLEEDGLPTNLHSLHI 345
           PE       L +L +     L   P    ++  L+  +   E+P      LP NL  LH+
Sbjct: 353 PEL---PQNLKQLHVEYN-PLREFPDIPESVEDLRMNSHLAEVPE-----LPQNLKQLHV 403

Query: 346 WGN 348
             N
Sbjct: 404 ETN 406

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 49/245 (20%), Positives = 75/245 (30%), Gaps = 49/245 (20%)

Query: 230 YCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECE--------- 280
           +   L  +    +N  S      +  E  +  P G     ++    + +C          
Sbjct: 19  HSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELEL 78

Query: 281 ---NLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEEDGL 336
               L S PE       L  L       L  LP+   +L SL         L       L
Sbjct: 79  NNLGLSSLPEL---PPHLESLVASCN-SLTELPELPQSLKSLLVDNNNLKALSD-----L 129

Query: 337 PTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPL 396
           P  L  L +  N       +E+       S L+ + ++          L+         L
Sbjct: 130 PPLLEYLGVSNN------QLEKLPELQNSSFLKIIDVDNN-------SLKK--------L 168

Query: 397 PASLTSLRIVDFPN--LERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYR 454
           P    SL  +   N  LE L   + +L  LT +   +   LK  P+  LP SL  +    
Sbjct: 169 PDLPPSLEFIAAGNNQLEEL-PELQNLPFLTAIYADNN-SLKKLPD--LPLSLESIVAGN 224

Query: 455 CPLME 459
             L E
Sbjct: 225 NILEE 229

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 74/412 (17%), Positives = 130/412 (31%), Gaps = 88/412 (21%)

Query: 59  LSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALP-SKLKIIEIEGCDALKSLPE 117
           L +   L ++P  + ++ S  E          + P       ++ +  +  C        
Sbjct: 17  LRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC-------- 68

Query: 118 AWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSS 177
                 +     L + +   L+      LP     L+ L         + E  QS     
Sbjct: 69  -----LDRQAHELELNNLG-LS-----SLPELPPHLESLVASCNSLTELPELPQS----- 112

Query: 178 SNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESI 237
                    L+ L + +        +   L          +LPP L+ L V    +LE +
Sbjct: 113 ---------LKSLLVDN-------NNLKALS---------DLPPLLEYLGVSNN-QLEKL 146

Query: 238 AERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSK 297
            E L N++ L+ I++    +LK LP        L+ I       L   PE       L+ 
Sbjct: 147 PE-LQNSSFLKIIDVDNN-SLKKLPDL---PPSLEFIAAGNN-QLEELPELQ-NLPFLTA 199

Query: 298 LRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGN-MEIWKSM 355
           +       L+ LP    +   L+ +  G   L  L E      L +++   N ++    +
Sbjct: 200 IYADNN-SLKKLPDLPLS---LESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDL 255

Query: 356 IERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTAL--------PLPASLTSLRIVD 407
                      SL  L +      +   P   + L T L         L     +L  ++
Sbjct: 256 P---------PSLEALNVRDN--YLTDLPELPQSL-TFLDVSENIFSGLSELPPNLYYLN 303

Query: 408 FPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCPLME 459
             +   + S      +L  LN+ +  KL   P   LP  L +L      L E
Sbjct: 304 ASSN-EIRSLCDLPPSLEELNVSNN-KLIELPA--LPPRLERLIASFNHLAE 351

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 100/477 (20%), Positives = 165/477 (34%), Gaps = 108/477 (22%)

Query: 15  LQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSC----RLEYLRLSYCEGLVKLPQ 70
            +++ S            ++      + ++  +  L      +   L L+   GL  LP+
Sbjct: 30  AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPE 88

Query: 71  SSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCD--ALKSLPEAWMCDTNSSLE 128
                  L  +    C+SL   PE  LP  LK + ++  +  AL  LP          LE
Sbjct: 89  L---PPHLESLVAS-CNSLTELPE--LPQSLKSLLVDNNNLKALSDLP--------PLLE 134

Query: 129 TLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLE 188
            L + + + L  L  +Q    LK +D +  ++++ L   +   S              LE
Sbjct: 135 YLGVSNNQ-LEKLPELQNSSFLKIID-VDNNSLKKL--PDLPPS--------------LE 176

Query: 189 KLEIRDCPSLTCIFSQNELPATLESLEVGN--------LPPSLKSLFVWYCPKLESIAER 240
            +   +   L  +     LP  L ++   N        LP SL+S+       LE + E 
Sbjct: 177 FIAAGNN-QLEELPELQNLPF-LTAIYADNNSLKKLPDLPLSLESIVAGNN-ILEELPE- 232

Query: 241 LDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRI 300
           L N   L TI       LK LP    +L  L   +      L   PE       L+ L +
Sbjct: 233 LQNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRDN----YLTDLPEL---PQSLTFLDV 284

Query: 301 YGCERLEALPKGLHNLTSLQ----QLT-IGGELPSLEE-----------DGLPTNLHSLH 344
                   L +   NL  L     ++  +    PSLEE             LP  L  L 
Sbjct: 285 SEN-IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLI 343

Query: 345 IWGNM--EIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTS 402
              N   E+ +             +L+ L +E     +  FP           +P S+  
Sbjct: 344 ASFNHLAEVPELP----------QNLKQLHVEYNP--LREFP----------DIPESVED 381

Query: 403 LRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCPLME 459
           LR+        L+      QNL  L++   P L+ FP+  +P S+  L +    +++
Sbjct: 382 LRM-----NSHLAEVPELPQNLKQLHVETNP-LREFPD--IPESVEDLRMNSERVVD 430

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.9 bits (132), Expect = 3e-08
 Identities = 74/352 (21%), Positives = 114/352 (32%), Gaps = 103/352 (29%)

Query: 94  EVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRL 153
              L +   ++ +     L +LP+       + + TL I     LT      LP     L
Sbjct: 35  RACLNNGNAVLNVGESG-LTTLPDCLP----AHITTLVIPDNN-LT-----SLPALPPEL 83

Query: 154 DILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKL--EIRDCPSLTCIF-SQNELPAT 210
             L                    S N+      L  L         L+        LPA 
Sbjct: 84  RTLEV------------------SGNQ------LTSLPVLPPGLLELSIFSNPLTHLPA- 118

Query: 211 LESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQ 270
                   LP  L  L+++   +L S+         L+ +++S    L  LP+    L +
Sbjct: 119 --------LPSGLCKLWIFGN-QLTSLPVLPPG---LQELSVSDN-QLASLPALPSELCK 165

Query: 271 LQEIEIWECEN-LVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQ----QLTIG 325
           L     W   N L S P      + L +L +    +L +LP     L  L     +LT  
Sbjct: 166 L-----WAYNNQLTSLPML---PSGLQELSVSDN-QLASLPTLPSELYKLWAYNNRLT-- 214

Query: 326 GELPSLEEDGLPTNLHSLHIWGNM--EIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSF 383
             LP+L     P+ L  L + GN    +              S L+ L + G        
Sbjct: 215 -SLPAL-----PSGLKELIVSGNRLTSLPVLP----------SELKELMVSGN------- 251

Query: 384 PLEDKRLGTALPLPASLTSLRIVDFPN--LERLSSSIVDLQNLTHLNLVDCP 433
                RL +   LP   + L  +      L RL  S++ L + T +NL   P
Sbjct: 252 -----RLTS---LPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 295

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.0 bits (114), Expect = 5e-06
 Identities = 72/339 (21%), Positives = 120/339 (35%), Gaps = 71/339 (20%)

Query: 37  AEEEKDQQQQLCEL-SCR---LEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSF 92
           AEE + +   + ++ +C       L +    GL  LP    +   +  + I   + L S 
Sbjct: 21  AEESRGRAAVVQKMRACLNNGNAVLNVGES-GLTTLPDCLPA--HITTLVIPDNN-LTSL 76

Query: 93  PEVALPSKLKIIEIEGCDALKSLPEAWMCDTN---------------SSLETLYIEHCRT 137
           P   LP +L+ +E+ G   L SLP                       S L  L+I   + 
Sbjct: 77  PA--LPPELRTLEVSGNQ-LTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQ- 132

Query: 138 LTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPS 197
           LT      LP     L  LS  + +  ++                    L KL   +   
Sbjct: 133 LT-----SLPVLPPGLQELSVSDNQLASLPALPSE--------------LCKLWAYNN-Q 172

Query: 198 LTCIFSQNELPATLESLEVGN--------LPPSLKSLFVWYCPKLESIAERLDNNTSLET 249
           LT +     LP+ L+ L V +        LP  L  L+ +   +L S+       + L+ 
Sbjct: 173 LTSL---PMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNN-RLTSLPALP---SGLKE 225

Query: 250 INISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEAL 309
           + +SG   L  LP       +L+E+ +     L S P      + L  L +Y   +L  L
Sbjct: 226 LIVSGNR-LTSLPV---LPSELKELMVSGN-RLTSLPML---PSGLLSLSVYRN-QLTRL 276

Query: 310 PKGLHNLTSLQQLTIGGELPSLEEDGLPTNLHSLHIWGN 348
           P+ L +L+S   + + G   S         + S   +  
Sbjct: 277 PESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSG 315

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.2 bits (131), Expect = 5e-08
 Identities = 59/337 (17%), Positives = 123/337 (36%), Gaps = 65/337 (19%)

Query: 125 SSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTS 184
             + TL  +    +  + GV+   +L +++  S + +  +T                   
Sbjct: 46  DQVTTLQADRLG-IKSIDGVEYLNNLTQIN-FSNNQLTDIT------------------- 84

Query: 185 SLLEKLEIRDCPSLTCI-FSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDN 243
                  +++   L  I  + N++ A +  L   NL  +L  L ++   ++  I + L N
Sbjct: 85  ------PLKNLTKLVDILMNNNQI-ADITPL--ANLT-NLTGLTLFNN-QITDI-DPLKN 132

Query: 244 NTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGC 303
            T+L  + +S      I  S +  L  L  ++     N V+  +       L +L I   
Sbjct: 133 LTNLNRLELSSN---TI--SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 187

Query: 304 ERLEALPKGLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGF 362
            ++  +   L  LT+L+ L     ++  +   G+ TNL  L + GN       ++     
Sbjct: 188 -KVSDIS-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ------LKDIGTL 239

Query: 363 HRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPN--LERLSSSIVD 420
              ++L  L +           + +      L   + LT L  +      +  +S  +  
Sbjct: 240 ASLTNLTDLDLANN-------QISN------LAPLSGLTKLTELKLGANQISNISP-LAG 285

Query: 421 LQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCPL 457
           L  LT+L L +  +L+         +L  L++Y   +
Sbjct: 286 LTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNNI 321

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 67/412 (16%), Positives = 138/412 (33%), Gaps = 89/412 (21%)

Query: 54  LEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKII-----EIEG 108
           L  +  S  + L  +     +L+ L +I +     +     +A  + L  +     +I  
Sbjct: 70  LTQINFSNNQ-LTDITPLK-NLTKLVDILMNNNQ-IADITPLANLTNLTGLTLFNNQITD 126

Query: 109 CDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEE 168
            D LK+L         ++L  L +     ++ ++ +    SL++L     + +  L    
Sbjct: 127 IDPLKNL---------TNLNRLELSSNT-ISDISALSGLTSLQQLSF--GNQVTDLKPLA 174

Query: 169 GIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGN-----LPP-- 221
            + +              LE+L+I     ++ I    +L   LESL   N     + P  
Sbjct: 175 NLTT--------------LERLDISSN-KVSDISVLAKLTN-LESLIATNNQISDITPLG 218

Query: 222 ---SLKSLFVWYCPKLESIAERLDNNTSLETINIS-----------GCENLKIL------ 261
              +L  L +    +L+ I   L + T+L  ++++           G   L  L      
Sbjct: 219 ILTNLDELSLNGN-QLKDIGT-LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ 276

Query: 262 ---PSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTS 318
               S L  L  L  +E+ E  N +           L+ L +Y    +  +   + +LT 
Sbjct: 277 ISNISPLAGLTALTNLELNE--NQLEDISPISNLKNLTYLTLYFN-NISDIS-PVSSLTK 332

Query: 319 LQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCD 377
           LQ+L     ++  +      TN++ L    N       I         + +  L +    
Sbjct: 333 LQRLFFYNNKVSDVSSLANLTNINWLSAGHNQ------ISDLTPLANLTRITQLGLNDQA 386

Query: 378 DDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNL 429
               + P+  K   +            + +        ++I D  + T  ++
Sbjct: 387 --WTNAPVNYKANVSIPNT--------VKNVTGALIAPATISDGGSYTEPDI 428

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 68/406 (16%), Positives = 155/406 (38%), Gaps = 54/406 (13%)

Query: 54  LEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALK 113
           +  L+     G+  +      L++L +I       L     +   +KL  I +     + 
Sbjct: 48  VTTLQADRL-GIKSIDGVE-YLNNLTQINFSNNQ-LTDITPLKNLTKLVDILMNNNQ-IA 103

Query: 114 SLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQS- 172
            +         ++L  L + + + +T +  ++   +L RL+ LS + I  ++   G+ S 
Sbjct: 104 DITPLANL---TNLTGLTLFNNQ-ITDIDPLKNLTNLNRLE-LSSNTISDISALSGLTSL 158

Query: 173 SSSSSSNRRYTSSLLEKLEIRDCPSLTCIF-SQNELPATLESLEVGNLPPSLKSLFVWYC 231
              S  N+     + +   + +  +L  +  S N++ + +  L    L  +L+SL     
Sbjct: 159 QQLSFGNQ-----VTDLKPLANLTTLERLDISSNKV-SDISVL--AKLT-NLESLIATNN 209

Query: 232 PKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPE-GGL 290
            ++  I   L   T+L+ ++++G +   I    L +L  L ++++     + +     GL
Sbjct: 210 -QISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANN-QISNLAPLSGL 264

Query: 291 PCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNM 349
              KL++L++    ++  +   L  LT+L  L +   +L  +       NL  L ++ N 
Sbjct: 265 T--KLTELKLGAN-QISNIS-PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 320

Query: 350 EIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFP 409
                 I         + L+ L             + D      +   A+LT++  +   
Sbjct: 321 ------ISDISPVSSLTKLQRLFFYNN-------KVSD------VSSLANLTNINWLSAG 361

Query: 410 N--LERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIY 453
           +  +  L+  + +L  +T L L D       P     +  +  ++ 
Sbjct: 362 HNQISDLTP-LANLTRITQLGLNDQ-AWTNAPVNYKANVSIPNTVK 405

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 52/283 (18%), Positives = 103/283 (36%), Gaps = 43/283 (15%)

Query: 187 LEKLEIRDCPSLTCIFSQNELPATLESLEVGNL----------PPSLKSLFVWYCPKLES 236
             K  +    ++T   SQ +L   + +L+   L            +L  +      +L  
Sbjct: 26  KMKTVLGKT-NVTDTVSQTDLD-QVTTLQADRLGIKSIDGVEYLNNLTQINFSNN-QLTD 82

Query: 237 IAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLS 296
           I   L N T L  I ++  +   I  + L NL  L  + ++   N ++  +       L+
Sbjct: 83  ITP-LKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFN--NQITDIDPLKNLTNLN 137

Query: 297 KLRIYGCERLEALPKGLHNLTSLQQLTIGGELPSLEEDGLPTNLHSLHIWGNMEIWKSMI 356
           +L +     +  +   L  LTSLQQL+ G ++  L+     T L  L I  N       +
Sbjct: 138 RLELSSN-TISDIS-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN------KV 189

Query: 357 ERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPN--LERL 414
                  + ++L  L                 ++ + +     LT+L  +      L+ +
Sbjct: 190 SDISVLAKLTNLESLIATNN------------QI-SDITPLGILTNLDELSLNGNQLKDI 236

Query: 415 SSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCPL 457
             ++  L NLT L+L +  ++         + L +L +    +
Sbjct: 237 -GTLASLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGANQI 277

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 56/277 (20%), Positives = 101/277 (36%), Gaps = 38/277 (13%)

Query: 197 SLTCIFSQNELPATLESLEVGN-----LPP-------SLKSLFVWYCPKLESIAERL-DN 243
           SL  I S   L   ++SL++ N     +         +L++L +     + +I E    +
Sbjct: 42  SLNSIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSS 98

Query: 244 NTSLETINISGCENLKILPSGL-HNLGQLQEIEIWECENLVSFPEGGL--PCAKLSKLRI 300
             SLE +++S    L  L S     L  L  + +       +  E  L     KL  LR+
Sbjct: 99  LGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRV 156

Query: 301 YGCERLEALPKG-LHNLTSLQQLTIGG-ELPSLEE---DGLPTNLHSLHIWGNMEIWKSM 355
              +    + +     LT L++L I   +L S E      +  N+  L +    +    +
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI-QNVSHLILHMK-QH--IL 212

Query: 356 IERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPN--LER 413
           +         SS+  L +   D D+ +F   +   G    L     + R V   +  L +
Sbjct: 213 LLEI-FVDVTSSVECLELR--DTDLDTFHFSELSTGETNSLI-KKFTFRNVKITDESLFQ 268

Query: 414 LSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQL 450
           +   +  +  L  L      +LK  P+ G+   L  L
Sbjct: 269 VMKLLNQISGLLELEFSRN-QLKSVPD-GIFDRLTSL 303

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 28/181 (15%), Positives = 56/181 (30%), Gaps = 25/181 (13%)

Query: 221 PSLKSLFVWYCPKLESIAER-LDNNTSLETINISGCENLKILPSG-LHNLGQLQEIEIWE 278
             L+ L V        I  +     T LE + I    +L+      L ++  +  + +  
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHM 207

Query: 279 CENLVSFPEG------GLPCAKLSKLRIYGCERLEALPKG----LHNLTSLQQLTIGGE- 327
               +   E        + C +L    +        L  G    L    + + + I  E 
Sbjct: 208 K-QHILLLEIFVDVTSSVECLELRDTDLDTF-HFSELSTGETNSLIKKFTFRNVKITDES 265

Query: 328 LPSLEED-GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEG----CDDDMVS 382
           L  + +     + L  L    N  +    +  G  F R +SL+ + +      C    + 
Sbjct: 266 LFQVMKLLNQISGLLELEFSRNQ-L--KSVPDGI-FDRLTSLQKIWLHTNPWDCSCPRID 321

Query: 383 F 383
           +
Sbjct: 322 Y 322

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 51/278 (18%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 195 CPSL-TCIFSQNELPATLESLEV--GNLPPSLKSLFVWYCPKLESIAER-LDNNTSLETI 250
           CP    C      +    +        +P   + L +    +++++ +    +   LE +
Sbjct: 3   CPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKN-RIKTLNQDEFASFPHLEEL 61

Query: 251 NISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEG---GLPCAKLSKLRIYGCERLE 307
            ++      + P   +NL  L+ + +     L   P G   GL    L+KL I    ++ 
Sbjct: 62  ELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLS--NLTKLDISEN-KIV 117

Query: 308 ALPKGL-HNLTSLQQLTIGG-ELPSLEED---GLPTNLHSLHIWGNMEIWKSMIERGRGF 362
            L   +  +L +L+ L +G  +L  +      GL  +L  L +     +  + I      
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN-SLEQLTLEKC-NL--TSIPTE-AL 172

Query: 363 HRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQ 422
                L  L +           +   R  +   L   L  L I  +P L+ ++ + +   
Sbjct: 173 SHLHGLIVLRLRHL-------NINAIRDYSFKRLY-RLKVLEISHWPYLDTMTPNCLYGL 224

Query: 423 NLTHLNLVDCPKLKYFPE---KGLPSSLLQLSIYRCPL 457
           NLT L++  C  L   P    + L   L  L++   P+
Sbjct: 225 NLTSLSITHC-NLTAVPYLAVRHLV-YLRFLNLSYNPI 260

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 59/310 (19%), Positives = 118/310 (38%), Gaps = 50/310 (16%)

Query: 53  RLEYLRLSYCEGLVKLPQSSLS-LSSLREIEIYKCSSLVSFPEVAL--PSKLKIIEIEGC 109
            LE L L+    +  +   + + L +LR + +     L   P       S L  ++I   
Sbjct: 57  HLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISEN 114

Query: 110 DALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAG---VQLPRSLKRLDILSCDNIRTLTV 166
             +  L +    D   +L++L +     L Y++      L  SL++L  L   N+ ++  
Sbjct: 115 K-IVILLDYMFQD-LYNLKSLEVGDND-LVYISHRAFSGLN-SLEQLT-LEKCNLTSIPT 169

Query: 167 E--EGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLK 224
           E    +                L  L +R    +  I        + + L        LK
Sbjct: 170 EALSHLHG--------------LIVLRLRHLN-INAI-----RDYSFKRL------YRLK 203

Query: 225 SLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSG-LHNLGQLQEIEIWECENLV 283
            L + + P L+++        +L +++I+ C NL  +P   + +L  L+ + +     + 
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-IS 261

Query: 284 SFPEGGL-PCAKLSKLRIYGCERLEALPKG-LHNLTSLQQLTIGG-ELPSLEEDGL--PT 338
           +     L    +L ++++ G  +L  +       L  L+ L + G +L +LEE       
Sbjct: 262 TIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320

Query: 339 NLHSLHIWGN 348
           NL +L +  N
Sbjct: 321 NLETLILDSN 330

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.9 bits (122), Expect = 6e-07
 Identities = 74/443 (16%), Positives = 151/443 (34%), Gaps = 68/443 (15%)

Query: 49  ELSCRLEYLRLSYCEGLVKLPQSSLS-LSSLREIEIYKCSSLVSFPEVALP--SKLKIIE 105
            L    + L LS+   L  L   S      L+ +++ +C  + +  + A    S L  + 
Sbjct: 25  NLPFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLI 82

Query: 106 IEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLP--RSLKRLDILSCDNIRT 163
           + G   ++SL         SSL+ L       L  L    +   ++LK L+ ++ + I++
Sbjct: 83  LTGN-PIQSLALGAF-SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELN-VAHNLIQS 138

Query: 164 LTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSL 223
             + E   + ++           LE L++     +  I         L  L    +P   
Sbjct: 139 FKLPEYFSNLTN-----------LEHLDLSSNK-IQSI-----YCTDLRVL--HQMPLLN 179

Query: 224 KSLFVWYCPKLESIAERLDNNTSLETINISGCEN-LKILPSGLHNLGQLQEIEIWECE-- 280
            SL +   P +  I         L  + +    + L ++ + +  L  L+   +   E  
Sbjct: 180 LSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 281 ---NLVSFPEG---GLPCAKLSKLRIYGCE-RLEALPKGLHNLTSLQQLTIGG-ELPSLE 332
              NL  F +    GL    + + R+   +  L+ +    + LT++   ++    +  ++
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 333 EDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLG- 391
           +         L +                  +  SL+ LT            ++   L  
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFP-------TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF 351

Query: 392 --------TALPLPA----SLTSLRIVD--FPNLERLSSSIVDLQNLTHLNLVDCPKLKY 437
                   +     +      TSL+ +D  F  +  +SS+ + L+ L HL+      LK 
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQ 410

Query: 438 FPEKGL---PSSLLQLSIYRCPL 457
             E  +     +L+ L I     
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHT 433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 61/389 (15%), Positives = 119/389 (30%), Gaps = 69/389 (17%)

Query: 45  QQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPS----- 99
           + L ++      L LS    +  +   +     L ++ +      ++  +  +       
Sbjct: 170 RVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE 228

Query: 100 --KLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYL--AGVQLPRSLKRLDI 155
             +L + E      L+   +         L  L IE  R L YL      +      L  
Sbjct: 229 VHRLVLGEFRNEGNLEKFDK----SALEGLCNLTIEEFR-LAYLDYYLDDIIDLFNCLTN 283

Query: 156 LSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSL------TCIFSQNELPA 209
           +S  ++ ++T    I+     S N  +    L   +    P+L         F+ N+   
Sbjct: 284 VSSFSLVSVT----IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG-- 337

Query: 210 TLESLEVGNLPPSLKSLFVWYCP--KLESIAERLDNNTSLETINISGCENLKILPSGLHN 267
              +       PSL+ L +           ++     TSL+ +++S    +  + S    
Sbjct: 338 --GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLG 394

Query: 268 LGQLQEIEIWECENLVSFPEGGL--PCAKLSKLRIYGCERLEALPKG-LHNLTSLQQL-- 322
           L QL+ ++     NL    E  +      L  L I           G  + L+SL+ L  
Sbjct: 395 LEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKM 452

Query: 323 ---TIGGELPSLEEDGLPTNLHSLHIWGNM------EIWKSM---------------IER 358
              +            L  NL  L +            + S+               +  
Sbjct: 453 AGNSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511

Query: 359 GRGFHRFSSLRHLTIEG----CDDDMVSF 383
           G  F R +SL+ + +      C    + +
Sbjct: 512 G-IFDRLTSLQKIWLHTNPWDCSCPRIDY 539

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 60/340 (17%), Positives = 127/340 (37%), Gaps = 49/340 (14%)

Query: 18  ICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLS-LS 76
           +  L      +   L+      +K   + LC L+  +E  RL+Y +  +       + L+
Sbjct: 229 VHRLVLGEFRNEGNLEKF----DKSALEGLCNLT--IEEFRLAYLDYYLDDIIDLFNCLT 282

Query: 77  SLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCR 136
           ++    +   + +    + +     + +E+  C      P   +     SL+ L     +
Sbjct: 283 NVSSFSLVSVT-IERVKDFSYNFGWQHLELVNCK-FGQFPTLKL----KSLKRLTFTSNK 336

Query: 137 TLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCP 196
                + V LP SL+ LD LS + +              S S+   TS  L+ L++    
Sbjct: 337 GGNAFSEVDLP-SLEFLD-LSRNGLSFKGC--------CSQSDFGTTS--LKYLDLSFN- 383

Query: 197 SLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAER--LDNNTSLETINISG 254
                     + +    L        L+ L   +   L+ ++E     +  +L  ++IS 
Sbjct: 384 ------GVITMSSNFLGL------EQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISH 430

Query: 255 CENLKILPSG-LHNLGQLQEIEIWECENLVSFPEGGLPC-AKLSKLRIYGCERLEALPKG 312
             + ++  +G  + L  L+ +++       +F          L+ L +  C +LE L   
Sbjct: 431 T-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPT 488

Query: 313 -LHNLTSLQQLTIGG-ELPSLEEDGLP--TNLHSLHIWGN 348
             ++L+SLQ L +   +L S+ +      T+L  + +  N
Sbjct: 489 AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 63/423 (14%), Positives = 135/423 (31%), Gaps = 67/423 (15%)

Query: 53  RLEYLRLSYCEGLVKLPQSSLS-LSSLREIEIYKCSSLVSFPEVALP--SKLKIIEIEGC 109
           RL+ L L+    L+ + +++LS   +L+ +   +   + S   + L     L+ + +   
Sbjct: 82  RLDTLVLTANP-LIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSN 139

Query: 110 DALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCD--NIRTLTVE 167
             + S+           L+ L  ++   + YL+  +   SL++   LS +        +E
Sbjct: 140 -HISSIKLP-KGFPTEKLKVLDFQNNA-IHYLSK-EDMSSLQQATNLSLNLNGNDIAGIE 195

Query: 168 EGIQSSSSSS----SNRRYTSSLLEKLEIRDCPSLTCI-FSQNELPATLESLEVGNLPPS 222
            G   S+          +    + + L+     SL    F   +      ++  G    S
Sbjct: 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255

Query: 223 LKSLFVWYCP-----------------------KLESIAERLDNNTSLETINISGCENLK 259
           ++S+ +                            L  +   L   ++L+ + +S  +   
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFEN 315

Query: 260 ILPSGLHNLGQLQEIEIWECENLVSFPEGGL-PCAKLSKLRIYGC--ERLEALPKGLHNL 316
           +      N   L  + I      +    G L     L +L +     E  +     L NL
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375

Query: 317 TSLQQLTIGG----ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLT 372
           + LQ L +       L +      P  L  L +     +   + +    F     L+ L 
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKECP-QLELLDLAFT-RL--KVKDAQSPFQNLHLLKVLN 431

Query: 373 IEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDF------PNLERLSSSIVDLQNLTH 426
           +      +     +         L   L +L+ ++           + ++S+  L  L  
Sbjct: 432 LSHS--LLDISSEQ---------LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480

Query: 427 LNL 429
           L L
Sbjct: 481 LVL 483

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 35/221 (15%), Positives = 69/221 (31%), Gaps = 25/221 (11%)

Query: 217 GNLPPSLKSLFVWYCPKLESIAER-LDNNTSLETINISGCENLKILPSGLHNLGQLQEIE 275
           G LP S + L   +   L +I         +L  ++++ C+   I      +  +L  + 
Sbjct: 29  GTLPNSTECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLV 87

Query: 276 IWECENLVSFPEGGL-PCAKLSKLRIYGCERLEALPKG-LHNLTSLQQLTIGG----ELP 329
           +     L+   E  L     L  L       + ++    LHN  +L+ L +G      + 
Sbjct: 88  LTAN-PLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISSIK 145

Query: 330 SLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKR 389
             +       L  L    N  I    + +           +L++           L    
Sbjct: 146 LPKGFPTE-KLKVLDFQNN-AI--HYLSKE-DMSSLQQATNLSLN----------LNGND 190

Query: 390 LGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLV 430
           +    P        + ++F   + L      L+N T  +L 
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLW 231

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 44/210 (20%), Positives = 73/210 (34%), Gaps = 34/210 (16%)

Query: 257 NLKILPSG-LHNLGQLQEIEIWECENLVSFPEG---GLPCAKLSKLRIYGCERLEALPKG 312
            L+++  G     G L++IEI + + L          LP  KL ++RI     L  +   
Sbjct: 41  KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP--KLHEIRIEKANNLLYINPE 98

Query: 313 -LHNLTSLQQLTIGG----ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSS 367
              NL +LQ L I       LP + +         L I  N+ I               +
Sbjct: 99  AFQNLPNLQYLLISNTGIKHLPDVHKIHSL-QKVLLDIQDNINI--------------HT 143

Query: 368 LRHLTIEGCDDDMVSFPLEDKRLGTALPLPA----SLTSLRIVDFPNLERLSSSI-VDLQ 422
           +   +  G   + V   L    +   +   A     L  L + D  NLE L + +     
Sbjct: 144 IERNSFVGLSFESVILWLNKNGI-QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS 202

Query: 423 NLTHLNLVDCPKLKYFPEKGLPSSLLQLSI 452
               L++    ++   P  GL  +L +L  
Sbjct: 203 GPVILDI-SRTRIHSLPSYGL-ENLKKLRA 230

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 56/277 (20%), Positives = 92/277 (33%), Gaps = 53/277 (19%)

Query: 50  LSCRLEYLRLSYCEGLVKLPQSSLS-LSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEG 108
           L      LR      L  + + + S    L +IEI +   L                   
Sbjct: 28  LPRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA-------------- 72

Query: 109 CDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEE 168
            D   +LP          L  + IE    L Y+   +  ++L  L  L   N     + +
Sbjct: 73  -DVFSNLP---------KLHEIRIEKANNLLYINP-EAFQNLPNLQYLLISNTGIKHLPD 121

Query: 169 GIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFV 228
             +  S               L+I+D  ++           T+E      L      L++
Sbjct: 122 VHKIHSLQ----------KVLLDIQDNINIH----------TIERNSFVGLSFESVILWL 161

Query: 229 WYCPKLESIAERLDNNTSLETINISGCENLKILPSG-LHNLGQLQEIEIWECENLVSFPE 287
                ++ I     N T L+ +N+S   NL+ LP+   H       ++I     + S P 
Sbjct: 162 NKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS 219

Query: 288 GGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTI 324
            GL    L KLR      L+ LP  L  L +L + ++
Sbjct: 220 YGL--ENLKKLRARSTYNLKKLPT-LEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 42/226 (18%), Positives = 70/226 (30%), Gaps = 35/226 (15%)

Query: 196 PSLTCI-FSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAER-LDNNTSLETINIS 253
             L  I  SQN++   +E+    NLP  L  + +     L  I      N  +L+ + IS
Sbjct: 54  GDLEKIEISQNDVLEVIEADVFSNLP-KLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112

Query: 254 GCENLKILPSGLH-NLGQLQEIEIWECENLVSFPEG---GLPCAKLSKLRIYGCERLEAL 309
               +K LP     +  Q   ++I +  N+ +       GL   +   L +     ++ +
Sbjct: 113 NT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS-FESVILWLNKN-GIQEI 169

Query: 310 PKGLHNLTSLQQLTIGG--ELPSLEED---GLPTNLHSLHIWGNMEIWKSMIERGRGFHR 364
                N T L +L +     L  L  D   G  +    L I          +        
Sbjct: 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGA-SGPVILDISRTRI---HSLPSYG---- 221

Query: 365 FSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPN 410
             +L+ L                  L   LP    L +L       
Sbjct: 222 LENLKKLRA-----------RSTYNL-KKLPTLEKLVALMEASLTY 255

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.2 bits (114), Expect = 4e-06
 Identities = 45/254 (17%), Positives = 87/254 (34%), Gaps = 58/254 (22%)

Query: 187 LEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTS 246
             K  ++   S+T   +QNEL              S+  +       ++S+ + +    +
Sbjct: 23  TIKDNLKK-KSVTDAVTQNELN-------------SIDQIIANNS-DIKSV-QGIQYLPN 66

Query: 247 LETINISGCENLKILPSGLHNLGQLQEI-----EIWECENLVSFPEGGLPCAKLSKLRIY 301
           +  + ++G +   I    L NL  L  +     +I +  +L           KL  L + 
Sbjct: 67  VTKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKIKDLSSLKDLK-------KLKSLSLE 117

Query: 302 GCERLEALPKGLHNLTSLQQLTIGG----ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIE 357
               +  +  GL +L  L+ L +G     ++  L    L T L +L +  N       I 
Sbjct: 118 HN-GISDIN-GLVHLPQLESLYLGNNKITDITVLS--RL-TKLDTLSLEDNQ------IS 166

Query: 358 RGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSS 417
                   + L++L +       +   L              L +L +++  + E L+  
Sbjct: 167 DIVPLAGLTKLQNLYLSKNHISDLR-ALA------------GLKNLDVLELFSQECLNKP 213

Query: 418 IVDLQNLTHLNLVD 431
           I    NL   N V 
Sbjct: 214 INHQSNLVVPNTVK 227

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 36/257 (14%), Positives = 80/257 (31%), Gaps = 43/257 (16%)

Query: 236 SIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGL-PCAK 294
           +I E   N    +   ++     + L S   +   ++E+++     L       L P  K
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTK 59

Query: 295 LSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-------ELPSLEE------------DG 335
           L  L +     L      L +L++L+ L +           PS+E               
Sbjct: 60  LELLNLSSN-VLYETL-DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS 117

Query: 336 LPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLG---- 391
                 ++++  N +I  +M+         S +++L ++  + D V+F            
Sbjct: 118 RGQGKKNIYLANN-KI--TMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 392 --------TALPLPASLTSLRIVDFPN--LERLSSSIVDLQNLTHLNLVDCPKLKYFPEK 441
                     +        L+ +D  +  L  +         +T ++L +  KL    + 
Sbjct: 174 LNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKA 232

Query: 442 -GLPSSLLQLSIYRCPL 457
                +L    +     
Sbjct: 233 LRFSQNLEHFDLRGNGF 249

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 35/234 (14%), Positives = 66/234 (28%), Gaps = 37/234 (15%)

Query: 125 SSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTS 184
           + L  L +            Q       L  L       +T+                  
Sbjct: 52  TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ--------- 102

Query: 185 SLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAER-LDN 243
             LE L+ +    L  +   +       SL       +L  L + +            + 
Sbjct: 103 --LEHLDFQHSN-LKQMSEFS----VFLSL------RNLIYLDISHT-HTRVAFNGIFNG 148

Query: 244 NTSLETINISGCENLKILPSG-LHNLGQLQEIEIWECENLVSFPEG---GLPCAKLSKLR 299
            +SLE + ++G    +         L  L  +++ +C  L          L    L  L 
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLS--SLQVLN 205

Query: 300 IYGCERLEALPKG-LHNLTSLQQLTIGG-ELPSLEED---GLPTNLHSLHIWGN 348
           +       +L       L SLQ L      + + ++      P++L  L++  N
Sbjct: 206 MSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.9 bits (114), Expect = 6e-06
 Identities = 54/423 (12%), Positives = 132/423 (31%), Gaps = 45/423 (10%)

Query: 53  RLEYLRLSYCEGLVKLPQSSLS-LSSLREIEIYKCS-SLVSFPEVALP--SKLKIIEIEG 108
            L  L L   + +  L   +   L  L E+ +Y C  S     +        L  +++  
Sbjct: 74  NLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132

Query: 109 CDALKSLPEAWMCDTNSSLETLYIEHCR----TLTYLAGVQLPRSLKRLDILSCDNIRTL 164
              ++SL         +SL+++     +        L  +Q   +L     L+ +++ + 
Sbjct: 133 NQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK-TLSFFS-LAANSLYS- 188

Query: 165 TVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNL--PPS 222
                  S         + + +LE L++      T   + N     +   +  +L     
Sbjct: 189 -----RVSVDWGKCMNPFRNMVLEILDVSGN-GWTVDITGN-FSNAISKSQAFSLILAHH 241

Query: 223 LKSLFVWYCPKLESIAERL---DNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWEC 279
           +      +   ++   +        +S+  +++S      +       L  L+ + +   
Sbjct: 242 IMGAGFGF-HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300

Query: 280 ENLVSFPEG---GLPCAKLSKLRIYGCERLEALPKG-LHNLTSLQQLTIGG-ELPSLEED 334
             +    +    GL    L  L +     L  L     + L  +  + +    +  +++ 
Sbjct: 301 -KINKIADEAFYGLD--NLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356

Query: 335 GLP--TNLHSLHIWGN----MEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDK 388
                  L +L +  N    +    S+ +     ++  +L  + +      +    LE+ 
Sbjct: 357 TFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENL 416

Query: 389 RLGTALPLPASLTSLRIVDFPNLERLSSS--IVDLQNLTHLNLVDCPKLKYFPEKGLPSS 446
            +   L     L  L + +       S      +  +L  L L +   L+   E  L   
Sbjct: 417 DILYFLLRVPHLQILIL-NQNRFSSCSGDQTPSENPSLEQLFLGEN-MLQLAWETELCWD 474

Query: 447 LLQ 449
           + +
Sbjct: 475 VFE 477

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 36/159 (22%), Positives = 64/159 (40%), Gaps = 18/159 (11%)

Query: 221 PSLKSLFVWYCPKLESIAER-LDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWEC 279
            SL +L ++    L  I     +  + L  + +       I     + +  L  +++ E 
Sbjct: 123 ASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181

Query: 280 ENLVSFPEG---GLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED- 334
           + L    EG   GL    L  L +  C  ++ +P  L  L  L++L + G   P +    
Sbjct: 182 KKLEYISEGAFEGLF--NLKYLNLGMC-NIKDMPN-LTPLVGLEELEMSGNHFPEIRPGS 237

Query: 335 --GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHL 371
             GL  +L  L +  + ++  S+IER   F   +SL  L
Sbjct: 238 FHGLS-SLKKLWVMNS-QV--SLIERN-AFDGLASLVEL 271

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 34/159 (21%), Positives = 66/159 (41%), Gaps = 18/159 (11%)

Query: 221 PSLKSLFVWYCPKLESIAER-LDNNTSLETINISGCENLKILPSGL-HNLGQLQEIEIWE 278
            +L +L ++   +L +I        + L+ + +     ++ +PS   + +  L+ +++ E
Sbjct: 112 ANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGE 169

Query: 279 CENLVSFPEG---GLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED 334
            + L    EG   GL    L  L +  C  L  +P  L  L  L +L + G  L ++   
Sbjct: 170 LKRLSYISEGAFEGLS--NLRYLNLAMC-NLREIP-NLTPLIKLDELDLSGNHLSAIRPG 225

Query: 335 GLP--TNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHL 371
                 +L  L +  + +I   +IER   F    SL  +
Sbjct: 226 SFQGLMHLQKLWMIQS-QI--QVIERN-AFDNLQSLVEI 260

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 46/240 (19%), Positives = 74/240 (30%), Gaps = 49/240 (20%)

Query: 235 ESIAERLDNNTSLETINISGC----ENLKILPSGLHNLGQLQEIEIWEC----------E 280
           +S+   L  + S++ I +SG     E  + L   + +   L+  E  +           E
Sbjct: 22  KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPE 81

Query: 281 NLVSFPEGGLPCAKLSKLRIYGC----ERLEALPKGLHNLTSLQQLTIGG---------- 326
            L    +  L C KL  +R+          E L   L   T L+ L +            
Sbjct: 82  ALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAK 141

Query: 327 ------ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCD--D 378
                 EL   ++      L S+    N     SM E  + F     L  + +       
Sbjct: 142 IARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP 201

Query: 379 DMVSFPLEDKRLGTALPLPASLTSLRIVDFPNL------ERLSSSIVDLQNLTHLNLVDC 432
           + +        L   L     L  L + D  N         L+ ++    NL  L L DC
Sbjct: 202 EGIE-----HLLLEGLAYCQELKVLDLQD--NTFTHLGSSALAIALKSWPNLRELGLNDC 254

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.5 bits (106), Expect = 5e-05
 Identities = 54/319 (16%), Positives = 106/319 (33%), Gaps = 58/319 (18%)

Query: 125 SSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTS 184
            S+  L +   + +  + G++   +L+ L+ L+ + I  ++    +              
Sbjct: 44  ESITKLVVAGEK-VASIQGIEYLTNLEYLN-LNGNQITDISPLSNLVK------------ 89

Query: 185 SLLEKLEIRDCPSLTCIFSQNELPATLESLEVGN-----LPP-----SLKSLFVWYCPKL 234
             L  L I     +T I +   L   L  L +       + P      + SL +     L
Sbjct: 90  --LTNLYIGTN-KITDISALQNLT-NLRELYLNEDNISDISPLANLTKMYSLNLGANHNL 145

Query: 235 ESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAK 294
             ++  L N T L  + ++  +   +  + + NL  L  + +    N +           
Sbjct: 146 SDLSP-LSNMTGLNYLTVTESKVKDV--TPIANLTDLYSLSL--NYNQIEDISPLASLTS 200

Query: 295 LSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWK 353
           L     Y   ++  +   + N+T L  L IG  ++  L      + L  L I  N     
Sbjct: 201 LHYFTAYVN-QITDIT-PVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQ---- 254

Query: 354 SMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPN--L 411
             I         + L+ L +               ++ + + +  +L+ L  +   N  L
Sbjct: 255 --ISDINAVKDLTKLKMLNVGSN------------QI-SDISVLNNLSQLNSLFLNNNQL 299

Query: 412 ERLS-SSIVDLQNLTHLNL 429
                  I  L NLT L L
Sbjct: 300 GNEDMEVIGGLTNLTTLFL 318

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 50/257 (19%), Positives = 97/257 (37%), Gaps = 44/257 (17%)

Query: 187 LEKLEIRDCPSLTCIFSQNELPATLESL-----------EVGNLPPSLKSLFVWYCPKLE 235
             +  ++   S+T + +Q EL  ++  L            +  L  +L+ L +    ++ 
Sbjct: 24  GIRAVLQKA-SVTDVVTQEELE-SITKLVVAGEKVASIQGIEYLT-NLEYLNLNGN-QIT 79

Query: 236 SIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKL 295
            I+  L N   L  + I     +  + + L NL  L+E+ + E  + +S         K+
Sbjct: 80  DISP-LSNLVKLTNLYIGTN-KITDISA-LQNLTNLRELYLNE--DNISDISPLANLTKM 134

Query: 296 SKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKS 354
             L +       +    L N+T L  LT+   ++  +      T+L+SL +  N      
Sbjct: 135 YSLNLGAN-HNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYN------ 187

Query: 355 MIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPN--LE 412
            IE        +SL + T                ++ T +   A++T L  +   N  + 
Sbjct: 188 QIEDISPLASLTSLHYFTAYVN------------QI-TDITPVANMTRLNSLKIGNNKIT 234

Query: 413 RLSSSIVDLQNLTHLNL 429
            L S + +L  LT L +
Sbjct: 235 DL-SPLANLSQLTWLEI 250

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 42/240 (17%), Positives = 83/240 (34%), Gaps = 46/240 (19%)

Query: 218 NLPPSLKSLFVWYCPKLESIAER-LDNNTSLETINISGCENLKILPSGLHNLGQLQEIEI 276
           +LPP    L +    K+  I +    N  +L T+ +   +  KI P     L +L+ + +
Sbjct: 49  DLPPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107

Query: 277 WECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKG-LHNLTSLQQLTIGG--------- 326
                L   PE       L +LR++    +  + K   + L  +  + +G          
Sbjct: 108 -SKNQLKELPEKMPK--TLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163

Query: 327 -----ELPSLEE------------DGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLR 369
                 +  L               GLP +L  LH+ GN +I  + ++        ++L 
Sbjct: 164 NGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGN-KI--TKVDAA-SLKGLNNLA 219

Query: 370 HLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNL 429
            L +           +     G+    P  L  L + +   L ++   + D + +  + L
Sbjct: 220 KLGLSFN-------SISAVDNGSLANTP-HLRELHL-NNNKLVKVPGGLADHKYIQVVYL 270

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 59/369 (15%), Positives = 131/369 (35%), Gaps = 33/369 (8%)

Query: 5   TYIWKSHNEL----LQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLS 60
            ++  S   L    +  I  L    +      ++   +E+ +  Q     S  + +    
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLL-VLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176

Query: 61  YCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWM 120
               ++ +   +++   L  I+     +  S+  +++ +KL+         L ++   W 
Sbjct: 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYF-LSILAKLQTNPKLSNLTLNNIETTWN 235

Query: 121 CDT-------NSSLETLYIEHCRTLTYLAGVQLPR---SLKRLDILSCDNIRTLTVEEGI 170
                     ++++    I + +    L          SLK L I    +      +  I
Sbjct: 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295

Query: 171 QSSSSSSSNRRYTSSLLEKLEIRDCPSLTCI----FSQNELPATLESLEVGNLPPSLKSL 226
               S+ + + +T S    + +     ++      FS N L         G+L   L++L
Sbjct: 296 YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL-TDTVFENCGHLT-ELETL 353

Query: 227 FVWYCP--KLESIAERLDNNTSLETINISGCENLKILPSGL-HNLGQLQEIEIWECENLV 283
            +      +L  IAE      SL+ ++IS          G       L  + +     L 
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN-ILT 412

Query: 284 SFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEE---DGLPTN 339
                 LP  ++  L ++   +++++PK +  L +LQ+L +   +L S+ +   D L  +
Sbjct: 413 DTIFRCLP-PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLT-S 469

Query: 340 LHSLHIWGN 348
           L  + +  N
Sbjct: 470 LQKIWLHTN 478

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 61/399 (15%), Positives = 125/399 (31%), Gaps = 61/399 (15%)

Query: 51  SCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALP--SKLKIIEIEG 108
           +   E    S+   L ++P    +  ++  + +     L   P       S+L  +++  
Sbjct: 3   TVSHEVADCSHL-KLTQVPDDLPT--NITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGF 58

Query: 109 CDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLA--GVQLPRSLKRLDILSCDNIRTLTV 166
               K  PE   C     L+ L ++H   L+ L+        +L  L  L  ++I+ +  
Sbjct: 59  NTISKLEPEL--CQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELH-LMSNSIQKI-- 112

Query: 167 EEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIF-SQNELPATLESLEVGNLPPSLKS 225
                                +        +L  +  S N L ++ +      L  +L+ 
Sbjct: 113 ---------------------KNNPFVKQKNLITLDLSHNGL-SSTKLGTQVQLE-NLQE 149

Query: 226 LFVWYCP--KLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLV 283
           L +       L+S    +  N+SL+ + +S  +  +  P   H +G+L  + +   +   
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209

Query: 284 SFPEG---GLPCAKLSKLRIYGCERLEALPKGL---HNLTSLQQLTIGG-ELPSLEEDGL 336
           S  E     L    +  L +    +L             T+L  L +    L  +  D  
Sbjct: 210 SLTEKLCLELANTSIRNLSLSNS-QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268

Query: 337 P--TNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTAL 394
                L    +  N         +    H    L ++             +    L    
Sbjct: 269 AWLPQLEYFFLEYNN-------IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321

Query: 395 PLP-ASLTSLRIVDFPN--LERL-SSSIVDLQNLTHLNL 429
                 L  L  ++  +  +  + S+    L NL +L+L
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 68/471 (14%), Positives = 144/471 (30%), Gaps = 65/471 (13%)

Query: 7   IWKSHNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLV 66
           I +        I  L  L + +  +L   + E+   +          +  L LS  + L 
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNV-QLGPSLTEKLCLELANT-----SIRNLSLSNSQ-LS 235

Query: 67  KLPQSS---LSLSSLREIEIYKCSSLVSFPEVALP--SKLKIIEIEGCDALKSLPEAWMC 121
               ++   L  ++L  +++   + L      +     +L+   +E  + ++ L    + 
Sbjct: 236 TTSNTTFLGLKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYNN-IQHLFSHSLH 293

Query: 122 DTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRR 181
               ++  L ++   T   ++   LP  +          +  L +            N  
Sbjct: 294 GL-FNVRYLNLKRSFTKQSISLASLP-KIDDFSFQWLKCLEHLNM----------EDNDI 341

Query: 182 YTSSLLEKLEIRDCPSLTCI-FSQNEL-PATLESLEVGNLP-PSLKSLFVWYCPKLESIA 238
                ++        +L  +  S +     TL +    +L    L  L +      +  +
Sbjct: 342 ---PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398

Query: 239 ERLDNNTSLETINISGCENLKILPSG-LHNLGQLQEIEIWECENLVSFPEGGL-PCAKLS 296
           +       LE +++   E  + L       L  + EI +      +            L 
Sbjct: 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN-KYLQLTRNSFALVPSLQ 457

Query: 297 KLRIYGC--ERLEALPKGLHNLTSLQQLTIGG----ELPSLEEDGLPTNLHSLHIWGNM- 349
           +L +     + +++ P     L +L  L +       +     +GL   L  L +  N  
Sbjct: 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE-KLEILDLQHNNL 516

Query: 350 -EIWKSMIERG--RGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPA--SLTSLR 404
             +WK     G        S L  L +E                   +P+     L  L+
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESN------------GF-DEIPVEVFKDLFELK 563

Query: 405 IVDFPN--LERL-SSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSI 452
           I+D     L  L +S   +  +L  LNL     +    +K    +   L+ 
Sbjct: 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTE 613

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 40/287 (13%), Positives = 87/287 (30%), Gaps = 43/287 (14%)

Query: 236 SIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGL-PCAK 294
           +I E   N    +   ++     + L S   +   ++E+++     L       L P  K
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTK 59

Query: 295 LSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-------ELPSLEE------------DG 335
           L  L +     L      L +L++L+ L +           PS+E               
Sbjct: 60  LELLNLSSN-VLYETL-DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS 117

Query: 336 LPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLG---- 391
                 ++++  N +I  +M+         S +++L ++  + D V+F            
Sbjct: 118 RGQGKKNIYLANN-KI--TMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 392 --------TALPLPASLTSLRIVDFPN--LERLSSSIVDLQNLTHLNLVDCPKLKYFPEK 441
                     +        L+ +D  +  L  +         +T ++L +  KL    + 
Sbjct: 174 LNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKA 232

Query: 442 -GLPSSLLQLSIYRCPLMEEKCRKDGGLLTHIPSVQIDLNGFLTAEQ 487
                +L    +          R        + +V       LT + 
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 30/173 (17%), Positives = 62/173 (35%), Gaps = 19/173 (10%)

Query: 221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENL--KILPSGLHNLGQLQEIEIWE 278
             L++L +      + I   L  N++L  +N+SGC       L + L +  +L E+ +  
Sbjct: 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 177

Query: 279 CENLVSFPEGGL---PCAKLSKLRIYGCERL---EALPKGLHNLTSLQQLTIGGELPSLE 332
           C +                +++L + G  +      L   +    +L  L +      L+
Sbjct: 178 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD-SVMLK 236

Query: 333 EDGL-----PTNLHSLHIWGNMEI-WKSMIERGRGFHRFSSLRHLTIEGCDDD 379
            D          L  L +    +I  ++++E         +L+ L + G   D
Sbjct: 237 NDCFQEFFQLNYLQHLSLSRCYDIIPETLLE----LGEIPTLKTLQVFGIVPD 285

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 41.0 bits (96), Expect = 6e-04
 Identities = 44/281 (15%), Positives = 92/281 (32%), Gaps = 35/281 (12%)

Query: 15  LQDICSLRR-----LTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLP 69
           L ++  +         + S   L   +    K+    +         +        +  P
Sbjct: 26  LPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQP 85

Query: 70  QSS-LSLSSLREIEIYKCSSLVSFPEVALPS--KLKIIEIEGC----DALKSLPEAWMCD 122
            +   S   ++ +++      VS     L    KL+ + +EG       + +L +     
Sbjct: 86  LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK----- 140

Query: 123 TNSSLETLYIEHCRTLT---YLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSS---- 175
            NS+L  L +  C   +       +     L  L++  C +     V+  +   S     
Sbjct: 141 -NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199

Query: 176 ---SSSNRRYTSSLLEKLEIRDCPSLTCI-FSQNELPATLESLEVGNLPPSLKSLFVWYC 231
              S   +    S L  L +R CP+L  +  S + +    +  +       L+ L +  C
Sbjct: 200 LNLSGYRKNLQKSDLSTL-VRRCPNLVHLDLSDSVM-LKNDCFQEFFQLNYLQHLSLSRC 257

Query: 232 PKLESIA-ERLDNNTSLETINISGC---ENLKILPSGLHNL 268
             +       L    +L+T+ + G      L++L   L +L
Sbjct: 258 YDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL 298

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 53/329 (16%), Positives = 103/329 (31%), Gaps = 51/329 (15%)

Query: 146 LPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQN 205
           LP S K LD LS + +R L           S S   +    L+ L++          S+ 
Sbjct: 26  LPFSTKNLD-LSFNPLRHLG----------SYSFFSFPE--LQVLDL----------SRC 62

Query: 206 ELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGL 265
           E+  T+E     +L   L +L +   P            +SL+ +         +    +
Sbjct: 63  EI-QTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120

Query: 266 HNLGQLQEIEIWECENLVSFPEGGL--PCAKLSKLRIYGCERLEALPKG-LHNLTSLQQL 322
            +L  L+E+ +     + SF           L  L +    +++++    L  L  +  L
Sbjct: 121 GHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLL 178

Query: 323 TI-----GGELPSLEEDGL-PTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGC 376
            +        +  ++        LH L +  N +    M          + L    +   
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT---CIQGLAGLEVHRL--- 232

Query: 377 DDDMVSFPLEDKRLGTALPLPASLTSLRIVDFP------NLERLSSSIVDLQNLTHLNLV 430
              +  F  E             L +L I +F        L+ +      L N++  +LV
Sbjct: 233 --VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290

Query: 431 DCPKLKYFPEKGLPSSLLQLSIYRCPLME 459
               ++   +         L +  C   +
Sbjct: 291 SV-TIERVKDFSYNFGWQHLELVNCKFGQ 318

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.1 bits (96), Expect = 7e-04
 Identities = 44/288 (15%), Positives = 90/288 (31%), Gaps = 58/288 (20%)

Query: 183 TSSLLEKLEIRDCPSLTCI-FSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAER- 240
           T  +    E     +   + F  + +   L +  + +    ++ L +    ++E I    
Sbjct: 38  TQDVYFGFEDITLNNQKIVTFKNSTM-RKLPAALLDSFR-QVELLNLNDL-QIEEIDTYA 94

Query: 241 LDNNTSLETINISGCENLKILPSGL-HNLGQLQEIEIWECENLVSFPEGGL-PCAKLSKL 298
                +++ + +     ++ LP  +  N+  L  + +    +L S P G      KL+ L
Sbjct: 95  FAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTL 152

Query: 299 RIYGCERLEALPKG-LHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMI 356
            +     LE +        TSLQ L +    L  ++   +P +L   ++  N        
Sbjct: 153 SMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP-SLFHANVSYN-------- 202

Query: 357 ERGRGFHRFSSLRHLTIEGCDDDMVSFP---------LEDKRLGTALPLPASLTSLRIVD 407
                     ++  L       ++V  P         L+   L T      +   L  VD
Sbjct: 203 -LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL-TDTAWLLNYPGLVEVD 260

Query: 408 -------------FPNLERL-------------SSSIVDLQNLTHLNL 429
                        F  ++RL             +     +  L  L+L
Sbjct: 261 LSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDL 308

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 5/107 (4%)

Query: 221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECE 280
            +L+ L +            L   TSL  ++IS   +   + + ++ L ++  I++    
Sbjct: 88  SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147

Query: 281 NLVSFPE-GGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG 326
            +        LP  +L  L I     +    +G+ +   L QL    
Sbjct: 148 AITDIMPLKTLP--ELKSLNIQFD-GVHDY-RGIEDFPKLNQLYAFS 190

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	495
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.98
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.98
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.98
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.98
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.97
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.97
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.97
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.97
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.97
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.97
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.97
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.96
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.96
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.95
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.94
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.94
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.94
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.92
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.92
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.91
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.89
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.89
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.87
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.87
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.87
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.87
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.86
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.86
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.85
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.84
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.82
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.82
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.81
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.81
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.81
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.81
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.8
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.8
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.8
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.8
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.8
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.79
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.78
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.78
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.78
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.78
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.76
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.76
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.74
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.72
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.72
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.7
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.69
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.69
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.68
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.68
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.68
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.68
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.68
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.67
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.67
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.67
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.66
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.65
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.65
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.63
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.58
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.55
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.54
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.54
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.53
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.53
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.52
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.52
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.52
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.47
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.46
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.46
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.46
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.44
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.42
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.41
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.4
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.39
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.36
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.35
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.35
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.34
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.33
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.3
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.3
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.29
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.26
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.24
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.23
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.21
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.21
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.21
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.19
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.14
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.13
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.11
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.1
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.03
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.02
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.0
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.99
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.99
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.98
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.98
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.98
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.96
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.9
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.9
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.88
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.87
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.87
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.82
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.78
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.77
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.74
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.72
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.58
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.52
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.5
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.42
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.34
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.33
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.24
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.19
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.17
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.16
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.7
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.62
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.44
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.74
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.32
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.65
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	93.64
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	89.27

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.5e-32  Score=293.07  Aligned_cols=255  Identities=18%  Similarity=0.163  Sum_probs=175.2

Q ss_pred             CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEe
Q 011033          221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRI  300 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l  300 (495)
                      ++|+.|++++|...+.+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+..+++|+.|++
T Consensus       394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  473 (768)
T 3rgz_A          394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL  473 (768)
T ss_dssp             CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence            56888888888777777888888888888888887655567777888888888888888555567777777888888888


Q ss_pred             cCccccccccccccCCCCcceeEecc-ccc-cccCC-CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccc
Q 011033          301 YGCERLEALPKGLHNLTSLQQLTIGG-ELP-SLEED-GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCD  377 (495)
Q Consensus       301 ~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~-~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  377 (495)
                      ++|.....+|..+..+++|++|++++ .+. .+|.. +.+++|++|++++|.. ....+.   .+.++++|+.|++++| 
T Consensus       474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l-~~~~p~---~l~~l~~L~~L~Ls~N-  548 (768)
T 3rgz_A          474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF-SGNIPA---ELGDCRSLIWLDLNTN-  548 (768)
T ss_dssp             CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC-EEECCG---GGGGCTTCCEEECCSS-
T ss_pred             cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc-cCcCCH---HHcCCCCCCEEECCCC-
Confidence            88876667788888888888888888 555 34433 5577888888888873 333343   5778888888888887 


Q ss_pred             cccc-cchhhhcc---------------------------------------------------------------cccc
Q 011033          378 DDMV-SFPLEDKR---------------------------------------------------------------LGTA  393 (495)
Q Consensus       378 ~~~~-~~~~~~~~---------------------------------------------------------------~~~~  393 (495)
                       .+. .+|.....                                                               ....
T Consensus       549 -~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~  627 (768)
T 3rgz_A          549 -LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT  627 (768)
T ss_dssp             -EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred             -ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchh
Confidence             322 23321110                                                               0011


Q ss_pred             CCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCCC-CCccccceeeccCCchhHHhhhcCCCeeeec
Q 011033          394 LPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEK-GLPSSLLQLSIYRCPLMEEKCRKDGGLLTHI  472 (495)
Q Consensus       394 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~i~~~  472 (495)
                      +..+++|+.|+++++.--..+|..+.+++.|+.|++++|+--..+|.. +.+++|++|++++|.....+-...+ .++.+
T Consensus       628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~-~l~~L  706 (768)
T 3rgz_A          628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS-ALTML  706 (768)
T ss_dssp             CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG-GCCCC
T ss_pred             hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh-CCCCC
Confidence            233467888888885544577778888888888888885533356653 3467888888888864433322222 35556


Q ss_pred             ceEEeccCcc
Q 011033          473 PSVQIDLNGF  482 (495)
Q Consensus       473 ~~~~i~~~~~  482 (495)
                      ..+++..|.+
T Consensus       707 ~~L~ls~N~l  716 (768)
T 3rgz_A          707 TEIDLSNNNL  716 (768)
T ss_dssp             SEEECCSSEE
T ss_pred             CEEECcCCcc
Confidence            6666666544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.9e-31  Score=276.61  Aligned_cols=134  Identities=13%  Similarity=0.100  Sum_probs=73.4

Q ss_pred             CccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCC
Q 011033           12 NELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVS   91 (495)
Q Consensus        12 ~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~   91 (495)
                      ...|.++++|++|++++ +.++.+.++    .|.++    ++|++|++++|......|..++.+++|++|++++| .++.
T Consensus        50 ~~~~~~l~~L~~L~Ls~-n~i~~~~~~----~~~~l----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~  119 (606)
T 3t6q_A           50 NTTFSRLINLTFLDLTR-CQIYWIHED----TFQSQ----HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT-GISS  119 (606)
T ss_dssp             TTTSTTCTTCSEEECTT-CCCCEECTT----TTTTC----TTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS-CCSC
T ss_pred             hhHhccCccceEEECCC-CccceeChh----hccCc----cccCeeeCCCCcccccChhhhcccccccEeecccc-Cccc
Confidence            44566666677777766 345555443    35666    66777777666443344555666666777777666 4444


Q ss_pred             CC--CCCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc--cCCCCcc--EEEeccC
Q 011033           92 FP--EVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLK--RLDILSC  158 (495)
Q Consensus        92 l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~--~L~l~~~  158 (495)
                      ++  .++.+++|++|++++|.......+.+..  +++|++|++++| .++.++..  ..+++|+  .|+++++
T Consensus       120 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~l~L~l~~n  189 (606)
T 3t6q_A          120 IDFIPLHNQKTLESLYLGSNHISSIKLPKGFP--TEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGN  189 (606)
T ss_dssp             GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCC--CTTCCEEECCSS-CCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred             CCcchhccCCcccEEECCCCcccccCcccccC--CcccCEEEcccC-cccccChhhhhhhcccceeEEecCCC
Confidence            32  2666666777777666532211122222  366666666664 33333221  3455555  5555553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.98  E-value=1e-30  Score=272.54  Aligned_cols=412  Identities=15%  Similarity=0.064  Sum_probs=247.1

Q ss_pred             cCccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCC
Q 011033           11 HNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLV   90 (495)
Q Consensus        11 ~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~   90 (495)
                      ....|.++++|++|++++ +.++.++++    .|.++    ++|++|++++|......|..++.+++|++|++++| .+.
T Consensus        48 ~~~~~~~l~~L~~L~Ls~-n~l~~i~~~----~~~~l----~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~  117 (606)
T 3vq2_A           48 KSYSFSNFSELQWLDLSR-CEIETIEDK----AWHGL----HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLA  117 (606)
T ss_dssp             CTTTTTTCTTCCEEECTT-CCCCEECTT----TTTTC----TTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS-CCC
T ss_pred             ChhhccCCccCcEEeCCC-CcccccCHH----Hhhch----hhcCEeECCCCcccccChhhcCCcccCCEEEccCC-ccc
Confidence            345678888999999998 467777664    57777    89999999988543444777889999999999888 566


Q ss_pred             CCCC--CCCCCCCcEEEEeCCCCCC-ccccccccCCCCCccEEecccCccccccccc-----------------------
Q 011033           91 SFPE--VALPSKLKIIEIEGCDALK-SLPEAWMCDTNSSLETLYIEHCRTLTYLAGV-----------------------  144 (495)
Q Consensus        91 ~l~~--~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-----------------------  144 (495)
                      .++.  ++.+++|++|++++|.... .+|..+..+  ++|++|++++|. ++.++..                       
T Consensus       118 ~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l--~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~  194 (606)
T 3vq2_A          118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL--TNLVHVDLSYNY-IQTITVNDLQFLRENPQVNLSLDMSLNPID  194 (606)
T ss_dssp             CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTC--TTCCEEECCSSC-CCEECTTTTHHHHHCTTCCCEEECTTCCCC
T ss_pred             cccccccCCCCCCCEEeCCCCcccceechHhHhhc--CCCCEEEccCCc-ceecChhhhhhhhccccccceeeccCCCcc
Confidence            5552  8888899999999887443 467777666  888888888853 3332211                       


Q ss_pred             ------cCCCCccEEEeccCCCc--------------ccccc--------------cccccc-------------CCC--
Q 011033          145 ------QLPRSLKRLDILSCDNI--------------RTLTV--------------EEGIQS-------------SSS--  175 (495)
Q Consensus       145 ------~~~~~L~~L~l~~~~~l--------------~~~~~--------------~~~~~~-------------~~~--  175 (495)
                            ....+|+.|+++++...              +...+              +.....             ...  
T Consensus       195 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~  274 (606)
T 3vq2_A          195 FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDF  274 (606)
T ss_dssp             EECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTC
T ss_pred             eeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccc
Confidence                  11124566666554210              00000              000000             000  


Q ss_pred             -CccCcccCccccceeeecCCCCCccc-------------ccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhc
Q 011033          176 -SSSNRRYTSSLLEKLEIRDCPSLTCI-------------FSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERL  241 (495)
Q Consensus       176 -~~~~~~~~~~~L~~L~l~~~~~l~~~-------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  241 (495)
                       .........++++.+++.++ .++.+             +..+.+ ..+   +.. -.++|+.|++++|......  .+
T Consensus       275 ~~~~~~~~~l~~L~~L~l~~~-~~~~l~~l~~~~~L~~L~l~~n~l-~~l---p~~-~l~~L~~L~l~~n~~~~~~--~~  346 (606)
T 3vq2_A          275 SDDIVKFHCLANVSAMSLAGV-SIKYLEDVPKHFKWQSLSIIRCQL-KQF---PTL-DLPFLKSLTLTMNKGSISF--KK  346 (606)
T ss_dssp             CGGGGSCGGGTTCSEEEEESC-CCCCCCCCCTTCCCSEEEEESCCC-SSC---CCC-CCSSCCEEEEESCSSCEEC--CC
T ss_pred             cccccccccCCCCCEEEecCc-cchhhhhccccccCCEEEcccccC-ccc---ccC-CCCccceeeccCCcCccch--hh
Confidence             00000122445666666553 22222             001111 111   101 2245556666555443333  34


Q ss_pred             CCCCCCcEEeeeCCCCCCc--ccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCcccccccc-ccccCCCC
Q 011033          242 DNNTSLETINISGCENLKI--LPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALP-KGLHNLTS  318 (495)
Q Consensus       242 ~~~~~L~~L~l~~~~~~~~--l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~  318 (495)
                      ..+++|+.|++++|.....  ++..+..+++|++|++++| .+..++..+..+++|+.|++++|......| ..+..+++
T Consensus       347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  425 (606)
T 3vq2_A          347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK  425 (606)
T ss_dssp             CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC-SEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred             ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC-ccccchhhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence            4566666666666432211  2445566677777777776 456666666677777788877776544444 46677778


Q ss_pred             cceeEecc-ccccccC--CCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCC
Q 011033          319 LQQLTIGG-ELPSLEE--DGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALP  395 (495)
Q Consensus       319 L~~L~l~~-~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  395 (495)
                      |++|++++ .+....+  ...+++|++|++++|.......+.   .+..+++|+.|++++|  .+..++...      +.
T Consensus       426 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~Ls~n--~l~~~~~~~------~~  494 (606)
T 3vq2_A          426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN---VFANTTNLTFLDLSKC--QLEQISWGV------FD  494 (606)
T ss_dssp             CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS---CCTTCTTCCEEECTTS--CCCEECTTT------TT
T ss_pred             CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH---hhccCCCCCEEECCCC--cCCccChhh------hc
Confidence            88888877 5444322  245677888888887633222333   5777888888888887  555543321      23


Q ss_pred             CCCCCceeeecccccccc-cccccccCCCCCeEeccCCCCCCCCCCC-CCc-cccceeeccCCch
Q 011033          396 LPASLTSLRIVDFPNLER-LSSSIVDLQNLTHLNLVDCPKLKYFPEK-GLP-SSLLQLSIYRCPL  457 (495)
Q Consensus       396 ~~~~L~~L~l~~~~~l~~-l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~-~~L~~L~l~~c~~  457 (495)
                      .+++|+.|++++| .++. .|..+..+++|++|++++|+ ++.+|.. ..+ ++|++|++++||.
T Consensus       495 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          495 TLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSV  557 (606)
T ss_dssp             TCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCC
T ss_pred             ccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCc
Confidence            5678888888885 4444 46678888888888888854 7777764 113 3688888888763

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.98  E-value=2.4e-31  Score=283.77  Aligned_cols=228  Identities=16%  Similarity=0.130  Sum_probs=165.8

Q ss_pred             CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEe
Q 011033          221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRI  300 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l  300 (495)
                      ++|+.|++++|...+.+|..+..+++|+.|++++|.....+|..+..+++|++|++++|.....+|..+..+++|+.|++
T Consensus       418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  497 (768)
T 3rgz_A          418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL  497 (768)
T ss_dssp             TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEc
Confidence            67888888888777777888888888888888887666677777888888888888888554466667777888888888


Q ss_pred             cCccccccccccccCCCCcceeEecc-ccc-cccCC-CCCCccceeEeeccCccchhhhc--------------------
Q 011033          301 YGCERLEALPKGLHNLTSLQQLTIGG-ELP-SLEED-GLPTNLHSLHIWGNMEIWKSMIE--------------------  357 (495)
Q Consensus       301 ~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~-~~~~~-~~~~~L~~L~l~~~~~~~~~~~~--------------------  357 (495)
                      ++|.....+|.++..+++|++|++++ .+. .+|.. ..+++|++|++++|.... .++.                    
T Consensus       498 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g-~ip~~~~~~~~~~~~~~~~~~~~~  576 (768)
T 3rgz_A          498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG-TIPAAMFKQSGKIAANFIAGKRYV  576 (768)
T ss_dssp             CSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES-BCCGGGGTTTTCBCCSTTCSCEEE
T ss_pred             cCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC-cCChHHhcccchhhhhcccccccc
Confidence            88876667788888888888888888 554 34332 556788888888775321 1110                    


Q ss_pred             -----------------------------------------------ccccCCCCCccceEEeeccccccc-cchhhhcc
Q 011033          358 -----------------------------------------------RGRGFHRFSSLRHLTIEGCDDDMV-SFPLEDKR  389 (495)
Q Consensus       358 -----------------------------------------------~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~  389 (495)
                                                                     .+..+.++++|+.|++++|  .+. .+|...  
T Consensus       577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N--~l~g~ip~~l--  652 (768)
T 3rgz_A          577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN--MLSGYIPKEI--  652 (768)
T ss_dssp             EEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS--CCBSCCCGGG--
T ss_pred             ccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC--cccccCCHHH--
Confidence                                                           0013455678889999988  444 455544  


Q ss_pred             ccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCCC-CCccccceeeccCCchh
Q 011033          390 LGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEK-GLPSSLLQLSIYRCPLM  458 (495)
Q Consensus       390 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l  458 (495)
                           ..+++|+.|+++++.--..+|..+.++++|++|++++|+--..+|.. ..+++|++|++++|+..
T Consensus       653 -----~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          653 -----GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             -----GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred             -----hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence                 25678999999995555588888889999999999996533356653 34788999999998643

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.98  E-value=1.4e-30  Score=271.33  Aligned_cols=383  Identities=16%  Similarity=0.144  Sum_probs=213.3

Q ss_pred             hcCccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccc-cccccCCCCccEEEEeCCCC
Q 011033           10 SHNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKL-PQSSLSLSSLREIEIYKCSS   88 (495)
Q Consensus        10 ~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l-~~~~~~l~~L~~L~l~~~~~   88 (495)
                      .....|.++++|++|++++ +.++.+.+.    .|+.+    ++|++|++++|. +..+ +..++.+++|++|++++| .
T Consensus        72 ~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~----~~~~l----~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n-~  140 (606)
T 3t6q_A           72 IHEDTFQSQHRLDTLVLTA-NPLIFMAET----ALSGP----KALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSN-H  140 (606)
T ss_dssp             ECTTTTTTCTTCCEEECTT-CCCSEECTT----TTSSC----TTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSS-C
T ss_pred             eChhhccCccccCeeeCCC-CcccccChh----hhccc----ccccEeeccccC-cccCCcchhccCCcccEEECCCC-c
Confidence            3456788999999999999 567777554    58888    999999999985 4554 567899999999999998 5


Q ss_pred             CCCC--CCCCCCCCCcEEEEeCCCCCCccccccccCCCCCcc--EEecccCccccccc-cccCCCCccEEEeccCCCccc
Q 011033           89 LVSF--PEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLE--TLYIEHCRTLTYLA-GVQLPRSLKRLDILSCDNIRT  163 (495)
Q Consensus        89 l~~l--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~--~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~  163 (495)
                      +..+  |.+..+++|++|++++|......+..+...  ++|+  .|++++|. ++.++ ......+|+.|++.++..+..
T Consensus       141 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~l~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~~~~~~~  217 (606)
T 3t6q_A          141 ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL--QQATNLSLNLNGND-IAGIEPGAFDSAVFQSLNFGGTQNLLV  217 (606)
T ss_dssp             CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTT--TTCCSEEEECTTCC-CCEECTTTTTTCEEEEEECTTCSCHHH
T ss_pred             ccccCcccccCCcccCEEEcccCcccccChhhhhhh--cccceeEEecCCCc-cCccChhHhhhccccccccCCchhHHH
Confidence            6654  556669999999999988444445556555  7788  88888864 44433 334445677777776542110


Q ss_pred             c-----------------------ccccccccC------------CCC----ccCcccCccccceeeecCCCCCcccccC
Q 011033          164 L-----------------------TVEEGIQSS------------SSS----SSNRRYTSSLLEKLEIRDCPSLTCIFSQ  204 (495)
Q Consensus       164 ~-----------------------~~~~~~~~~------------~~~----~~~~~~~~~~L~~L~l~~~~~l~~~~~~  204 (495)
                      .                       .++......            ...    ........++++.|+++++ .++.+   
T Consensus       218 ~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~l---  293 (606)
T 3t6q_A          218 IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSEL---  293 (606)
T ss_dssp             HHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCC---
T ss_pred             HhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCC-ccCCC---
Confidence            0                       000000000            000    0000112234555555442 22222   


Q ss_pred             CCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccc-cCCCCCCccEEEeeCCCCcc
Q 011033          205 NELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPS-GLHNLGQLQEIEIWECENLV  283 (495)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~l~  283 (495)
                         |..     ... .++|++|++++|......+..+..+++|+.|++++|.....++. .+..+++|++|++++|. +.
T Consensus       294 ---p~~-----l~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~  363 (606)
T 3t6q_A          294 ---PSG-----LVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IE  363 (606)
T ss_dssp             ---CSS-----CCS-CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CC
T ss_pred             ---Chh-----hcc-cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cc
Confidence               111     111 25666666666655555555566666666666666544434432 35566666666666653 33


Q ss_pred             cc---CCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccC---CCCCCccceeEeeccCccchhhh
Q 011033          284 SF---PEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEE---DGLPTNLHSLHIWGNMEIWKSMI  356 (495)
Q Consensus       284 ~l---~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~---~~~~~~L~~L~l~~~~~~~~~~~  356 (495)
                      ..   +..+..+++|+.|++++|......|..+..+++|++|++++ .+.....   ...+++|++|++++|.. ....+
T Consensus       364 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~  442 (606)
T 3t6q_A          364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL-DISSE  442 (606)
T ss_dssp             EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC-BTTCT
T ss_pred             cccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc-CCcCH
Confidence            22   33455556666666666654444445556666666666665 3333211   23345666666666652 22222


Q ss_pred             cccccCCCCCccceEEeecccccccc--chhhhccccccCCCCCCCceeeeccccccccc-ccccccCCCCCeEeccCC
Q 011033          357 ERGRGFHRFSSLRHLTIEGCDDDMVS--FPLEDKRLGTALPLPASLTSLRIVDFPNLERL-SSSIVDLQNLTHLNLVDC  432 (495)
Q Consensus       357 ~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c  432 (495)
                      .   .+.++++|++|++++|  .+..  ++..     ..+..+++|+.|++++| .++.+ |..+..+++|++|++++|
T Consensus       443 ~---~~~~l~~L~~L~L~~n--~l~~~~~~~~-----~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N  510 (606)
T 3t6q_A          443 Q---LFDGLPALQHLNLQGN--HFPKGNIQKT-----NSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHN  510 (606)
T ss_dssp             T---TTTTCTTCCEEECTTC--BCGGGEECSS-----CGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred             H---HHhCCCCCCEEECCCC--CCCccccccc-----hhhccCCCccEEECCCC-ccCccChhhhccccCCCEEECCCC
Confidence            2   3555566666666665  2222  1100     00112345555555553 33332 334555555555555553

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.98  E-value=7.3e-31  Score=273.82  Aligned_cols=342  Identities=18%  Similarity=0.195  Sum_probs=266.3

Q ss_pred             cccccccCCCCccEEEEeCCCCCCC------------------CCC-CC--CCCCCcEEEEeCCCCCCccccccccCCCC
Q 011033           67 KLPQSSLSLSSLREIEIYKCSSLVS------------------FPE-VA--LPSKLKIIEIEGCDALKSLPEAWMCDTNS  125 (495)
Q Consensus        67 ~l~~~~~~l~~L~~L~l~~~~~l~~------------------l~~-~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  125 (495)
                      .+|..++++++|++|++++|. ++.                  +|. ++  .+++|++|++++|...+.+|..+..+  +
T Consensus       197 ~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l--~  273 (636)
T 4eco_A          197 FVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL--P  273 (636)
T ss_dssp             EECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC--S
T ss_pred             cCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC--C
Confidence            478889999999999999984 665                  776 77  89999999999999888999888777  8


Q ss_pred             CccEEecccCcccc--ccccc-cC------CCCccEEEeccCCCcccccccc--ccccCCCCccCcccCccccceeeecC
Q 011033          126 SLETLYIEHCRTLT--YLAGV-QL------PRSLKRLDILSCDNIRTLTVEE--GIQSSSSSSSNRRYTSSLLEKLEIRD  194 (495)
Q Consensus       126 ~L~~L~l~~~~~l~--~~~~~-~~------~~~L~~L~l~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~  194 (495)
                      +|++|++++|..++  .+|.. ..      +++|+.|+++++ .++.+  |.  .+.           .+++|+.|++++
T Consensus       274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~i--p~~~~l~-----------~l~~L~~L~L~~  339 (636)
T 4eco_A          274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTF--PVETSLQ-----------KMKKLGMLECLY  339 (636)
T ss_dssp             SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSC--CCHHHHT-----------TCTTCCEEECCS
T ss_pred             CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCcc--Cchhhhc-----------cCCCCCEEeCcC
Confidence            99999999976355  35544 22      389999999996 55555  55  342           256799999988


Q ss_pred             CCCCc-ccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCC-CcEEeeeCCCCCCcccccCCCCC--C
Q 011033          195 CPSLT-CIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTS-LETINISGCENLKILPSGLHNLG--Q  270 (495)
Q Consensus       195 ~~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~l~~~~~~l~--~  270 (495)
                      + .++ .+             +...-.++|+.|++++|... .+|..+..+++ |+.|++++|. +..+|..+..++  +
T Consensus       340 N-~l~g~i-------------p~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~  403 (636)
T 4eco_A          340 N-QLEGKL-------------PAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSV  403 (636)
T ss_dssp             C-CCEEEC-------------CCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSC
T ss_pred             C-cCccch-------------hhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCc
Confidence            4 444 33             21111268999999988655 78888999999 9999999965 558888777654  8


Q ss_pred             ccEEEeeCCCCccccCCCCC-------CCCCCcEEEecCcccccccccc-ccCCCCcceeEecc-ccccccCCCC--C--
Q 011033          271 LQEIEIWECENLVSFPEGGL-------PCAKLSKLRIYGCERLEALPKG-LHNLTSLQQLTIGG-ELPSLEEDGL--P--  337 (495)
Q Consensus       271 L~~L~l~~~~~l~~l~~~~~-------~~~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~-~l~~~~~~~~--~--  337 (495)
                      |+.|++++|......|..+.       .+++|+.|++++|. ++.+|.. +..+++|++|++++ .+..++....  .  
T Consensus       404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~  482 (636)
T 4eco_A          404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE  482 (636)
T ss_dssp             EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTE
T ss_pred             cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccc
Confidence            99999999965555555555       66799999999986 5567664 45689999999999 7777776422  1  


Q ss_pred             -----CccceeEeeccCccchhhhcccccCC--CCCccceEEeeccccccccchhhhccccccCCCCCCCceeeecc---
Q 011033          338 -----TNLHSLHIWGNMEIWKSMIERGRGFH--RFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVD---  407 (495)
Q Consensus       338 -----~~L~~L~l~~~~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~---  407 (495)
                           ++|++|++++|...  .++.   .+.  .+++|++|++++|  .+..+|...       ..+++|+.|++++   
T Consensus       483 ~~~~l~~L~~L~Ls~N~l~--~lp~---~~~~~~l~~L~~L~Ls~N--~l~~ip~~~-------~~l~~L~~L~Ls~N~~  548 (636)
T 4eco_A          483 NFKNTYLLTSIDLRFNKLT--KLSD---DFRATTLPYLVGIDLSYN--SFSKFPTQP-------LNSSTLKGFGIRNQRD  548 (636)
T ss_dssp             ECTTGGGCCEEECCSSCCC--BCCG---GGSTTTCTTCCEEECCSS--CCSSCCCGG-------GGCSSCCEEECCSCBC
T ss_pred             cccccCCccEEECcCCcCC--ccCh---hhhhccCCCcCEEECCCC--CCCCcChhh-------hcCCCCCEEECCCCcc
Confidence                 28999999999843  3333   344  8999999999998  777776655       2568999999954   


Q ss_pred             ---cccccccccccccCCCCCeEeccCCCCCCCCCCCCCccccceeeccCCchh
Q 011033          408 ---FPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCPLM  458 (495)
Q Consensus       408 ---~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l  458 (495)
                         +.-.+.+|..+..+++|++|++++|+ ++.+|.. +.++|++|++++|+..
T Consensus       549 ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~-~~~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          549 AQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEK-ITPNISVLDIKDNPNI  600 (636)
T ss_dssp             TTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-CCTTCCEEECCSCTTC
T ss_pred             cccCcccccChHHHhcCCCCCEEECCCCc-CCccCHh-HhCcCCEEECcCCCCc
Confidence               44466788899999999999999965 6889875 4589999999999744

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.97  E-value=4.2e-29  Score=263.82  Aligned_cols=134  Identities=17%  Similarity=0.167  Sum_probs=93.1

Q ss_pred             cCccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccc-cccCCCCccEEEEeCCCCC
Q 011033           11 HNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQ-SSLSLSSLREIEIYKCSSL   89 (495)
Q Consensus        11 ~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l   89 (495)
                      +...|.++++|++|++++ +.++.++++    .|+++    ++|++|++++| .+..+|. .++.+++|++|++++| .+
T Consensus        41 ~~~~~~~l~~L~~L~Ls~-n~l~~~~~~----~~~~l----~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n-~l  109 (680)
T 1ziw_A           41 PAANFTRYSQLTSLDVGF-NTISKLEPE----LCQKL----PMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSN-SI  109 (680)
T ss_dssp             CGGGGGGGTTCSEEECCS-SCCCCCCTT----HHHHC----TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CC
T ss_pred             CHHHHhCCCcCcEEECCC-CccCccCHH----HHhcc----cCcCEEECCCC-ccCccChhhhccCCCCCEEECCCC-cc
Confidence            345577888888888888 467776654    57777    88888888887 4566665 5788888888888887 56


Q ss_pred             CCCCC--CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc----cCCCCccEEEeccC
Q 011033           90 VSFPE--VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV----QLPRSLKRLDILSC  158 (495)
Q Consensus        90 ~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~----~~~~~L~~L~l~~~  158 (495)
                      +.+++  ++.+++|++|++++|......+..+...  ++|++|++++|. ++.++..    ...++|+.|+++++
T Consensus       110 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n  181 (680)
T 1ziw_A          110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL--ENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSN  181 (680)
T ss_dssp             CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCC--TTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTC
T ss_pred             CccChhHccccCCCCEEECCCCcccccCchhhccc--ccCCEEEccCCc-ccccCHHHhhccccccccEEECCCC
Confidence            66653  7788888888888887444444444444  778888887753 4443322    23467777777764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=5e-30  Score=272.35  Aligned_cols=341  Identities=17%  Similarity=0.175  Sum_probs=264.6

Q ss_pred             ccccccCCCCccEEEEeCCCCCCC------------------CCC-CC--CCCCCcEEEEeCCCCCCccccccccCCCCC
Q 011033           68 LPQSSLSLSSLREIEIYKCSSLVS------------------FPE-VA--LPSKLKIIEIEGCDALKSLPEAWMCDTNSS  126 (495)
Q Consensus        68 l~~~~~~l~~L~~L~l~~~~~l~~------------------l~~-~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  126 (495)
                      +|..++++++|++|++++| .++.                  +|. ++  .+++|++|++++|...+.+|..+..+  ++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L--~~  516 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL--PE  516 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC--SS
T ss_pred             hhHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC--CC
Confidence            7888999999999999998 4655                  776 66  89999999999999888999888877  89


Q ss_pred             ccEEecccCccccc--cccc--------cCCCCccEEEeccCCCcccccccc--ccccCCCCccCcccCccccceeeecC
Q 011033          127 LETLYIEHCRTLTY--LAGV--------QLPRSLKRLDILSCDNIRTLTVEE--GIQSSSSSSSNRRYTSSLLEKLEIRD  194 (495)
Q Consensus       127 L~~L~l~~~~~l~~--~~~~--------~~~~~L~~L~l~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~  194 (495)
                      |+.|++++|..++.  +|..        ..+++|+.|+++++ .+..+  |.  .+.           .+++|+.|++++
T Consensus       517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~i--p~~~~l~-----------~L~~L~~L~Ls~  582 (876)
T 4ecn_A          517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEF--PASASLQ-----------KMVKLGLLDCVH  582 (876)
T ss_dssp             CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBC--CCHHHHT-----------TCTTCCEEECTT
T ss_pred             CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCcc--CChhhhh-----------cCCCCCEEECCC
Confidence            99999999753543  5432        34569999999996 55555  55  342           256799999988


Q ss_pred             CCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCC-CcEEeeeCCCCCCcccccCCCCCC--c
Q 011033          195 CPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTS-LETINISGCENLKILPSGLHNLGQ--L  271 (495)
Q Consensus       195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~l~~~~~~l~~--L  271 (495)
                      + .++.+             +...-.++|+.|++++|... .+|..+..+++ |+.|++++|. +..+|..+..++.  |
T Consensus       583 N-~l~~l-------------p~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L  646 (876)
T 4ecn_A          583 N-KVRHL-------------EAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVM  646 (876)
T ss_dssp             S-CCCBC-------------CCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCE
T ss_pred             C-Ccccc-------------hhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCC
Confidence            4 44444             21222378999999988766 78888999999 9999999965 5588887776654  9


Q ss_pred             cEEEeeCCCCccccCCC---C--CCCCCCcEEEecCccccccccccc-cCCCCcceeEecc-ccccccCCCC--------
Q 011033          272 QEIEIWECENLVSFPEG---G--LPCAKLSKLRIYGCERLEALPKGL-HNLTSLQQLTIGG-ELPSLEEDGL--------  336 (495)
Q Consensus       272 ~~L~l~~~~~l~~l~~~---~--~~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~-~l~~~~~~~~--------  336 (495)
                      +.|++++|.....+|..   .  ..+++|+.|++++|. +..+|..+ ..+++|+.|++++ .+..+|....        
T Consensus       647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~  725 (876)
T 4ecn_A          647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK  725 (876)
T ss_dssp             EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCT
T ss_pred             CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCcCCccChHHhcccccccc
Confidence            99999999544433321   1  244589999999986 55777655 4899999999999 7777776422        


Q ss_pred             -CCccceeEeeccCccchhhhcccccCC--CCCccceEEeeccccccccchhhhccccccCCCCCCCceeeecc------
Q 011033          337 -PTNLHSLHIWGNMEIWKSMIERGRGFH--RFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVD------  407 (495)
Q Consensus       337 -~~~L~~L~l~~~~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------  407 (495)
                       +++|++|++++|.. . .++.   .+.  .+++|+.|++++|  .+..++...       ..+++|+.|++++      
T Consensus       726 nl~~L~~L~Ls~N~L-~-~lp~---~l~~~~l~~L~~L~Ls~N--~L~~lp~~l-------~~L~~L~~L~Ls~N~~ls~  791 (876)
T 4ecn_A          726 NTYLLTTIDLRFNKL-T-SLSD---DFRATTLPYLSNMDVSYN--CFSSFPTQP-------LNSSQLKAFGIRHQRDAEG  791 (876)
T ss_dssp             TGGGCCEEECCSSCC-C-CCCG---GGSTTTCTTCCEEECCSS--CCSSCCCGG-------GGCTTCCEEECCCCBCTTC
T ss_pred             ccCCccEEECCCCCC-c-cchH---HhhhccCCCcCEEEeCCC--CCCccchhh-------hcCCCCCEEECCCCCCccc
Confidence             13899999999974 3 3333   454  8999999999998  777776654       2567999999987      


Q ss_pred             cccccccccccccCCCCCeEeccCCCCCCCCCCCCCccccceeeccCCchh
Q 011033          408 FPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCPLM  458 (495)
Q Consensus       408 ~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l  458 (495)
                      +.-...+|..+.++++|++|++++|+ ++.+|.. +.++|+.|++++|+..
T Consensus       792 N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~-l~~~L~~LdLs~N~l~  840 (876)
T 4ecn_A          792 NRILRQWPTGITTCPSLIQLQIGSND-IRKVDEK-LTPQLYILDIADNPNI  840 (876)
T ss_dssp             CBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-CCSSSCEEECCSCTTC
T ss_pred             ccccccChHHHhcCCCCCEEECCCCC-CCccCHh-hcCCCCEEECCCCCCC
Confidence            44456788899999999999999965 6889886 5589999999999754

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.97  E-value=1.2e-29  Score=273.47  Aligned_cols=246  Identities=17%  Similarity=0.162  Sum_probs=151.5

Q ss_pred             CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCcccc-CCCCCCCCCCcEEE
Q 011033          221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSF-PEGGLPCAKLSKLR  299 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~  299 (495)
                      ++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|++|++++|. ++.+ +..+..+++|+.|+
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~  344 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LGELYSSNFYGLPKVAYID  344 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC-CSCCCSCSCSSCTTCCEEE
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC-CCccCHHHhcCCCCCCEEE
Confidence            568888888777666666677788888888888865444445667778888888888873 4443 45667777888888


Q ss_pred             ecCccccccc-cccccCCCCcceeEecc-ccccccCCCCCCccceeEeeccCccchhhhc-------------------c
Q 011033          300 IYGCERLEAL-PKGLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIE-------------------R  358 (495)
Q Consensus       300 l~~~~~~~~~-~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------------~  358 (495)
                      +++|. +..+ +..+..+++|++|++++ .+..++.   +++|+.|++++|....  ++.                   .
T Consensus       345 L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~---~~~L~~L~l~~N~l~~--l~~~~~~l~~L~ls~N~l~~l~~  418 (844)
T 3j0a_A          345 LQKNH-IAIIQDQTFKFLEKLQTLDLRDNALTTIHF---IPSIPDIFLSGNKLVT--LPKINLTANLIHLSENRLENLDI  418 (844)
T ss_dssp             CCSCC-CCCCCSSCSCSCCCCCEEEEETCCSCCCSS---CCSCSEEEEESCCCCC--CCCCCTTCCEEECCSCCCCSSTT
T ss_pred             CCCCC-CCccChhhhcCCCCCCEEECCCCCCCcccC---CCCcchhccCCCCccc--ccccccccceeecccCccccCch
Confidence            88875 3444 34577788888888877 5554432   3444455444443110  000                   0


Q ss_pred             cccCCCCCccceEEeeccccccccchhh---------------hccc---------cccCCCCCCCceeeeccccccccc
Q 011033          359 GRGFHRFSSLRHLTIEGCDDDMVSFPLE---------------DKRL---------GTALPLPASLTSLRIVDFPNLERL  414 (495)
Q Consensus       359 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~---------------~~~~---------~~~~~~~~~L~~L~l~~~~~l~~l  414 (495)
                      ...+.++++|+.|++++|  .+..++..               .+.+         ...+..+++|+.|++++ +.++.+
T Consensus       419 ~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~  495 (844)
T 3j0a_A          419 LYFLLRVPHLQILILNQN--RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH-NYLNSL  495 (844)
T ss_dssp             HHHHTTCTTCCEEEEESC--CCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCH-HHHTTC
T ss_pred             hhhhhcCCccceeeCCCC--cccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCC-Cccccc
Confidence            001235566666666665  33221110               0000         11233456788888888 466666


Q ss_pred             cc-ccccCCCCCeEeccCCCCCCCCCCCCCccccceeeccCCchhHHhhhcCCCeeeecceEEeccCc
Q 011033          415 SS-SIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCPLMEEKCRKDGGLLTHIPSVQIDLNG  481 (495)
Q Consensus       415 ~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~i~~~~~~~i~~~~  481 (495)
                      +. .+..+++|++|++++| .++.++...+.++|++|++++|........    .+..+..+.+.+|.
T Consensus       496 ~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~----~~~~L~~l~l~~Np  558 (844)
T 3j0a_A          496 PPGVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDISRNQLLAPNPD----VFVSLSVLDITHNK  558 (844)
T ss_dssp             CTTSSSSCCSCSEEEEESC-CCSSCCCCCCCSCCCEEEEEEECCCCCCSC----CCSSCCEEEEEEEC
T ss_pred             ChhHccchhhhheeECCCC-CCCccChhhhhccccEEECCCCcCCCCChh----HhCCcCEEEecCCC
Confidence            54 5788899999999994 688888776678899999988854322211    23344555555543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.97  E-value=3.8e-29  Score=260.62  Aligned_cols=398  Identities=17%  Similarity=0.153  Sum_probs=220.0

Q ss_pred             ccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCC-CC-CC
Q 011033           19 CSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSF-PE-VA   96 (495)
Q Consensus        19 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l-~~-~~   96 (495)
                      +++++|++++ +.++.+++.    .|.++    ++|++|++++|......|..++.+++|++|++++| .++.+ |. ++
T Consensus        32 ~~l~~L~Ls~-n~l~~~~~~----~~~~l----~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~  101 (606)
T 3vq2_A           32 SSTKNIDLSF-NPLKILKSY----SFSNF----SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFS  101 (606)
T ss_dssp             TTCCEEECTT-SCCCEECTT----TTTTC----TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSST
T ss_pred             CCcCEEECCC-CCcCEeChh----hccCC----ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-cccccChhhcC
Confidence            6799999999 678888774    58888    99999999998543444667999999999999998 56666 43 88


Q ss_pred             CCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCcccc--ccccc-cCCCCccEEEeccCCCccccccccccc--
Q 011033           97 LPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLT--YLAGV-QLPRSLKRLDILSCDNIRTLTVEEGIQ--  171 (495)
Q Consensus        97 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~--  171 (495)
                      .+++|++|++++|......+..+...  ++|++|++++|. ++  .+|.. ..+++|+.|+++++ .++.+. +..+.  
T Consensus       102 ~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l  176 (606)
T 3vq2_A          102 GLTSLENLVAVETKLASLESFPIGQL--ITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYN-YIQTIT-VNDLQFL  176 (606)
T ss_dssp             TCTTCCEEECTTSCCCCSSSSCCTTC--TTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSS-CCCEEC-TTTTHHH
T ss_pred             CcccCCEEEccCCccccccccccCCC--CCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCC-cceecC-hhhhhhh
Confidence            99999999999998443333556555  899999999964 44  34543 77899999999986 444331 11110  


Q ss_pred             -----------cCCCC---ccCcccCccccceeeecCCCCC--------------ccc-c--------------------
Q 011033          172 -----------SSSSS---SSNRRYTSSLLEKLEIRDCPSL--------------TCI-F--------------------  202 (495)
Q Consensus       172 -----------~~~~~---~~~~~~~~~~L~~L~l~~~~~l--------------~~~-~--------------------  202 (495)
                                 -+.+.   .........+++.|+++++...              +.. .                    
T Consensus       177 ~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~  256 (606)
T 3vq2_A          177 RENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME  256 (606)
T ss_dssp             HHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGT
T ss_pred             hccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhh
Confidence                       00000   0111122235777777664211              000 0                    


Q ss_pred             -------------cCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCC
Q 011033          203 -------------SQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLG  269 (495)
Q Consensus       203 -------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~  269 (495)
                                   ..+.+...++.   ..-.++|+.|+++++.. ..+| .+..+++|++|++++|.. ..+|. + .++
T Consensus       257 ~l~~l~l~~l~l~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~-~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~  328 (606)
T 3vq2_A          257 GLCDVTIDEFRLTYTNDFSDDIVK---FHCLANVSAMSLAGVSI-KYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLP  328 (606)
T ss_dssp             TGGGSEEEEEEECCCTTCCGGGGS---CGGGTTCSEEEEESCCC-CCCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCS
T ss_pred             hhhhccHhheeccccccccccccc---cccCCCCCEEEecCccc-hhhh-hccccccCCEEEcccccC-ccccc-C-CCC
Confidence                         00001100000   01124566666665443 2333 455556666666666443 44542 3 555


Q ss_pred             CccEEEeeCCCCccccCCCCCCCCCCcEEEecCccc-------------------------cccccccccCCCCcceeEe
Q 011033          270 QLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCER-------------------------LEALPKGLHNLTSLQQLTI  324 (495)
Q Consensus       270 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~-------------------------~~~~~~~l~~l~~L~~L~l  324 (495)
                      +|++|++++|.....+  .+..+++|+.|++++|..                         +..+|..+..+++|++|++
T Consensus       329 ~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l  406 (606)
T 3vq2_A          329 FLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDF  406 (606)
T ss_dssp             SCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEEC
T ss_pred             ccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeEC
Confidence            5555555555333322  222344444444444432                         3333344444555555555


Q ss_pred             cc-ccccccC---CCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeecccccccc--chhhhccccccCCCCC
Q 011033          325 GG-ELPSLEE---DGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVS--FPLEDKRLGTALPLPA  398 (495)
Q Consensus       325 ~~-~l~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~~~~  398 (495)
                      ++ .+..+++   ...+++|++|++++|.. ....+.   .+.++++|++|++++|  .+..  ++..       +..++
T Consensus       407 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~---~~~~l~~L~~L~l~~n--~l~~~~~~~~-------~~~l~  473 (606)
T 3vq2_A          407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNT-KIDFDG---IFLGLTSLNTLKMAGN--SFKDNTLSNV-------FANTT  473 (606)
T ss_dssp             TTSEEESTTTTTTTTTCTTCCEEECTTSCC-EECCTT---TTTTCTTCCEEECTTC--EEGGGEECSC-------CTTCT
T ss_pred             CCCccCCccChhhhhccccCCEEECcCCCC-Cccchh---hhcCCCCCCEEECCCC--cCCCcchHHh-------hccCC
Confidence            54 3332221   12344555555555542 212222   3455555555555555  3322  1221       23455


Q ss_pred             CCceeeecccccccc-cccccccCCCCCeEeccCCCCCCCCCCC--CCccccceeeccCCc
Q 011033          399 SLTSLRIVDFPNLER-LSSSIVDLQNLTHLNLVDCPKLKYFPEK--GLPSSLLQLSIYRCP  456 (495)
Q Consensus       399 ~L~~L~l~~~~~l~~-l~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~  456 (495)
                      +|+.|++++| .++. .|..+..+++|++|++++| .+..++..  ..+++|++|++++|.
T Consensus       474 ~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~  532 (606)
T 3vq2_A          474 NLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNR  532 (606)
T ss_dssp             TCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred             CCCEEECCCC-cCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCc
Confidence            6777777764 3333 3445666677777777774 35544221  225667777777764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=3.2e-30  Score=269.00  Aligned_cols=365  Identities=18%  Similarity=0.221  Sum_probs=273.0

Q ss_pred             HHhhhhhcccccceeecccccCCcc-----------------cccccc--CCCCccEEEEeCCCCCCCCCC-CCCCCCCc
Q 011033           43 QQQQLCELSCRLEYLRLSYCEGLVK-----------------LPQSSL--SLSSLREIEIYKCSSLVSFPE-VALPSKLK  102 (495)
Q Consensus        43 ~~~~l~~~~~~L~~L~ls~~~~l~~-----------------l~~~~~--~l~~L~~L~l~~~~~l~~l~~-~~~~~~L~  102 (495)
                      .++++    ++|++|++++|...+.                 +|..++  ++++|++|++++|...+.+|. ++.+++|+
T Consensus       201 ~l~~l----~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  276 (636)
T 4eco_A          201 AVMRL----TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ  276 (636)
T ss_dssp             GGGGC----TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred             HHhcc----cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence            48888    9999999999864343                 999988  999999999999977778886 89999999


Q ss_pred             EEEEeCCC-CCC-ccccccccC----CCCCccEEecccCcccccccc---ccCCCCccEEEeccCCCcc-cccccccccc
Q 011033          103 IIEIEGCD-ALK-SLPEAWMCD----TNSSLETLYIEHCRTLTYLAG---VQLPRSLKRLDILSCDNIR-TLTVEEGIQS  172 (495)
Q Consensus       103 ~L~l~~~~-~~~-~~~~~~~~~----~~~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~  172 (495)
                      +|++++|. ... .+|..++..    .+++|++|++++| .++.+|.   ...+++|+.|+++++ .++ .+  | .+  
T Consensus       277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N-~l~g~i--p-~~--  349 (636)
T 4eco_A          277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYN-QLEGKL--P-AF--  349 (636)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSC-CCEEEC--C-CC--
T ss_pred             EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCC-cCccch--h-hh--
Confidence            99999997 444 588777542    2378999999996 4668887   378899999999986 454 55  4 22  


Q ss_pred             CCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCC-ccEEEeecCCCchhhhhhcCCCC--CCcE
Q 011033          173 SSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPS-LKSLFVWYCPKLESIAERLDNNT--SLET  249 (495)
Q Consensus       173 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~  249 (495)
                               ...++|+.|+++++ .++.+      |..+     ..+ ++ |+.|++++|... .+|..+...+  +|+.
T Consensus       350 ---------~~l~~L~~L~L~~N-~l~~l------p~~l-----~~l-~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~  406 (636)
T 4eco_A          350 ---------GSEIKLASLNLAYN-QITEI------PANF-----CGF-TEQVENLSFAHNKLK-YIPNIFDAKSVSVMSA  406 (636)
T ss_dssp             ---------EEEEEESEEECCSS-EEEEC------CTTS-----EEE-CTTCCEEECCSSCCS-SCCSCCCTTCSSCEEE
T ss_pred             ---------CCCCCCCEEECCCC-ccccc------cHhh-----hhh-cccCcEEEccCCcCc-ccchhhhhcccCccCE
Confidence                     12457999999884 44433      1111     222 56 999999988866 7787776654  8999


Q ss_pred             EeeeCCCCCCcccccCC-------CCCCccEEEeeCCCCccccCCC-CCCCCCCcEEEecCccccccccccccC------
Q 011033          250 INISGCENLKILPSGLH-------NLGQLQEIEIWECENLVSFPEG-GLPCAKLSKLRIYGCERLEALPKGLHN------  315 (495)
Q Consensus       250 L~l~~~~~~~~l~~~~~-------~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~------  315 (495)
                      |++++|......|..+.       .+++|++|++++| .++.+|.. +..+++|+.|++++|. ++.+|.....      
T Consensus       407 L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~  484 (636)
T 4eco_A          407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENF  484 (636)
T ss_dssp             EECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEEC
T ss_pred             EECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccc
Confidence            99999876666677777       7889999999998 66677764 3457899999999986 4477764332      


Q ss_pred             --CCCcceeEecc-ccccccCC-C--CCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccc-----cccccch
Q 011033          316 --LTSLQQLTIGG-ELPSLEED-G--LPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCD-----DDMVSFP  384 (495)
Q Consensus       316 --l~~L~~L~l~~-~l~~~~~~-~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-----~~~~~~~  384 (495)
                        +++|++|++++ .+..+|.. .  .+++|++|++++|.. .. ++.   .+.++++|+.|++++|.     .-...+|
T Consensus       485 ~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l-~~-ip~---~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p  559 (636)
T 4eco_A          485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF-SK-FPT---QPLNSSTLKGFGIRNQRDAQGNRTLREWP  559 (636)
T ss_dssp             TTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCC-SS-CCC---GGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred             cccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCC-CC-cCh---hhhcCCCCCEEECCCCcccccCcccccCh
Confidence              23999999999 88788765 3  689999999999984 33 444   57789999999997651     1133444


Q ss_pred             hhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCCCCC----------ccccceeeccC
Q 011033          385 LEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGL----------PSSLLQLSIYR  454 (495)
Q Consensus       385 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~----------~~~L~~L~l~~  454 (495)
                      ...       ..+++|+.|++++ +.++.+|..+.  ++|++|++++|+ +.++.....          +...+..++++
T Consensus       560 ~~l-------~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~  628 (636)
T 4eco_A          560 EGI-------TLCPSLTQLQIGS-NDIRKVNEKIT--PNISVLDIKDNP-NISIDLSYVCPYIEAGMYMLFYDKTQDIRG  628 (636)
T ss_dssp             TTG-------GGCSSCCEEECCS-SCCCBCCSCCC--TTCCEEECCSCT-TCEEECTTTHHHHHTTCCEEECCTTSEEES
T ss_pred             HHH-------hcCCCCCEEECCC-CcCCccCHhHh--CcCCEEECcCCC-CccccHHhcchhhhcccceeecCCccccCC
Confidence            433       3567999999999 56699997655  899999999965 666543222          12234457778


Q ss_pred             CchhH
Q 011033          455 CPLME  459 (495)
Q Consensus       455 c~~l~  459 (495)
                      |+.+.
T Consensus       629 C~~L~  633 (636)
T 4eco_A          629 CDALD  633 (636)
T ss_dssp             CGGGC
T ss_pred             Ccccc
Confidence            87653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.97  E-value=2.9e-29  Score=256.60  Aligned_cols=398  Identities=15%  Similarity=0.080  Sum_probs=262.8

Q ss_pred             ccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCC
Q 011033           19 CSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALP   98 (495)
Q Consensus        19 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~   98 (495)
                      ++|++|++++ +.++.++++    .|.++    ++|++|++++|...+..|..++.+++|++|++++| .++.+|.. .+
T Consensus        21 ~~L~~L~Ls~-n~i~~~~~~----~~~~l----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~l   89 (520)
T 2z7x_B           21 QKTTILNISQ-NYISELWTS----DILSL----SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH-PT   89 (520)
T ss_dssp             TTCSEEECCS-SCCCCCCHH----HHTTC----TTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC-CC
T ss_pred             ccccEEECCC-CcccccChh----hcccc----ccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc-cc
Confidence            7899999999 578887764    58888    99999999998554445778999999999999998 77788876 89


Q ss_pred             CCCcEEEEeCCCCCC-ccccccccCCCCCccEEecccCccccccccccCCCCc--cEEEeccCCC--ccccccccccccC
Q 011033           99 SKLKIIEIEGCDALK-SLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSL--KRLDILSCDN--IRTLTVEEGIQSS  173 (495)
Q Consensus        99 ~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L--~~L~l~~~~~--l~~~~~~~~~~~~  173 (495)
                      ++|++|++++|.... .+|..+...  ++|++|+++++. ++. .....+++|  +.|+++++..  ....  +..+..-
T Consensus        90 ~~L~~L~L~~N~l~~~~~p~~~~~l--~~L~~L~L~~n~-l~~-~~~~~l~~L~L~~L~l~~n~l~~~~~~--~~~l~~l  163 (520)
T 2z7x_B           90 VNLKHLDLSFNAFDALPICKEFGNM--SQLKFLGLSTTH-LEK-SSVLPIAHLNISKVLLVLGETYGEKED--PEGLQDF  163 (520)
T ss_dssp             CCCSEEECCSSCCSSCCCCGGGGGC--TTCCEEEEEESS-CCG-GGGGGGTTSCEEEEEEEECTTTTSSCC--TTTTTTC
T ss_pred             CCccEEeccCCccccccchhhhccC--CcceEEEecCcc-cch-hhccccccceeeEEEeecccccccccc--ccccccc
Confidence            999999999998544 467787777  899999999864 443 223455677  9999988643  1222  2222110


Q ss_pred             C----------C-----CccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCC-------------------
Q 011033          174 S----------S-----SSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNL-------------------  219 (495)
Q Consensus       174 ~----------~-----~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~-------------------  219 (495)
                      .          +     .........++++.++++++.......   .+...++  ....+                   
T Consensus       164 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~~  238 (520)
T 2z7x_B          164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS---YFLSILA--KLQTNPKLSNLTLNNIETTWNSFI  238 (520)
T ss_dssp             CEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH---HHHHHHH--GGGGCTTCCEEEEEEEEEEHHHHH
T ss_pred             ccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc---eeecchh--hhccccchhhccccccccCHHHHH
Confidence            0          0     000011123455666655532000000   0000000  00011                   


Q ss_pred             -------CCCccEEEeecCCCchhhhhhc-----CCCCCCcEEeeeCCCCCCccc-ccCCCC---CCccEEEeeCCCCcc
Q 011033          220 -------PPSLKSLFVWYCPKLESIAERL-----DNNTSLETINISGCENLKILP-SGLHNL---GQLQEIEIWECENLV  283 (495)
Q Consensus       220 -------~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~l~-~~~~~l---~~L~~L~l~~~~~l~  283 (495)
                             .++|++|++++|...+.+|..+     ..+++|+.++++++..  .+| ..+..+   .+|+.|++++|. +.
T Consensus       239 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~-l~  315 (520)
T 2z7x_B          239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTR-MV  315 (520)
T ss_dssp             HHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSC-CC
T ss_pred             HHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCc-cc
Confidence                   1245555555444443444444     4555555555555332  333 222222   346666666653 22


Q ss_pred             ccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccC----CCCCCccceeEeeccCccchhhhcc
Q 011033          284 SFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEE----DGLPTNLHSLHIWGNMEIWKSMIER  358 (495)
Q Consensus       284 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~  358 (495)
                      ..+ ....+++|+.|++++|.....+|..+..+++|++|++++ .+..++.    ...+++|++|++++|.. ...++. 
T Consensus       316 ~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l-~~~l~~-  392 (520)
T 2z7x_B          316 HML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV-SYDEKK-  392 (520)
T ss_dssp             CCC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCC-BCCGGG-
T ss_pred             ccc-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcC-Cccccc-
Confidence            222 125678999999999986666788899999999999999 7665432    35678999999999984 332333 


Q ss_pred             cccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCC
Q 011033          359 GRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYF  438 (495)
Q Consensus       359 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l  438 (495)
                       ..+..+++|++|++++|  .+.......        .+++|+.|++++ +.++.+|..+..+++|++|++++| .++.+
T Consensus       393 -~~~~~l~~L~~L~Ls~N--~l~~~~~~~--------l~~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l  459 (520)
T 2z7x_B          393 -GDCSWTKSLLSLNMSSN--ILTDTIFRC--------LPPRIKVLDLHS-NKIKSIPKQVVKLEALQELNVASN-QLKSV  459 (520)
T ss_dssp             -CSCCCCTTCCEEECCSS--CCCGGGGGS--------CCTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSS-CCCCC
T ss_pred             -chhccCccCCEEECcCC--CCCcchhhh--------hcccCCEEECCC-CcccccchhhhcCCCCCEEECCCC-cCCcc
Confidence             25788899999999998  554322222        347999999999 588899988889999999999995 68899


Q ss_pred             CCC--CCccccceeeccCCch
Q 011033          439 PEK--GLPSSLLQLSIYRCPL  457 (495)
Q Consensus       439 ~~~--~~~~~L~~L~l~~c~~  457 (495)
                      |..  ..+++|++|++++||.
T Consensus       460 ~~~~~~~l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          460 PDGIFDRLTSLQKIWLHTNPW  480 (520)
T ss_dssp             CTTTTTTCTTCCEEECCSSCB
T ss_pred             CHHHhccCCcccEEECcCCCC
Confidence            875  3378999999999973

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.97  E-value=3e-29  Score=259.47  Aligned_cols=396  Identities=19%  Similarity=0.190  Sum_probs=187.7

Q ss_pred             ccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCC
Q 011033           13 ELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSF   92 (495)
Q Consensus        13 ~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l   92 (495)
                      ..|.++++|++|++++| .++.++++    .|+++    ++|++|++++|......|..++.+++|++|++++| .++.+
T Consensus        46 ~~~~~l~~L~~L~Ls~n-~i~~i~~~----~~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l  115 (570)
T 2z63_A           46 YSFFSFPELQVLDLSRC-EIQTIEDG----AYQSL----SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASL  115 (570)
T ss_dssp             TTTTTCSSCCEEECTTC-CCCEECTT----TTTTC----TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCS
T ss_pred             hHhhCCCCceEEECCCC-cCCccCcc----cccCc----hhCCEEeCcCCcCCccCHhhhcCcccccccccccc-ccccC
Confidence            34556666666666663 45555543    35555    66666666665322222345666666666666665 45554


Q ss_pred             CC--CCCCCCCcEEEEeCCCCCC-ccccccccCCCCCccEEecccCccccccccc--cCCCCc----cEEEeccCCCccc
Q 011033           93 PE--VALPSKLKIIEIEGCDALK-SLPEAWMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSL----KRLDILSCDNIRT  163 (495)
Q Consensus        93 ~~--~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L----~~L~l~~~~~l~~  163 (495)
                      +.  ++.+++|++|++++|.... .+|..+..+  ++|++|++++| .++.++..  ..+++|    +.++++++ .++.
T Consensus       116 ~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L~l~~n-~l~~  191 (570)
T 2z63_A          116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL--TNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNF  191 (570)
T ss_dssp             TTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGC--TTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCEEECTTC-CCCE
T ss_pred             CCccccccccccEEecCCCccceecChhhhccc--CCCCEEeCcCC-ccceecHHHccchhccchhhhhcccCCC-Ccee
Confidence            43  5666666666666665322 245555544  66666666664 23332211  222333    44555443 2222


Q ss_pred             cccccccccCCCCccCcccCccccceeeecCCCC------------------------------CcccccCCCCcc----
Q 011033          164 LTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPS------------------------------LTCIFSQNELPA----  209 (495)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------------------------------l~~~~~~~~~~~----  209 (495)
                      +  +...           +...+++.+++.++..                              ++.+ ....+..    
T Consensus       192 ~--~~~~-----------~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~-~~~~~~~l~~l  257 (570)
T 2z63_A          192 I--QPGA-----------FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF-DKSALEGLCNL  257 (570)
T ss_dssp             E--CTTT-----------TTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEEC-CTTTTGGGGGS
T ss_pred             c--CHHH-----------hccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhc-chhhhcccccc
Confidence            2  1100           0111344444433200                              0000 0000000    


Q ss_pred             -----------ccccccc--CCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCccccc------------
Q 011033          210 -----------TLESLEV--GNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSG------------  264 (495)
Q Consensus       210 -----------~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~------------  264 (495)
                                 .+.....  ..-.++|+.|+++++.. ..+|..+..+ +|+.|++++|. +..+|..            
T Consensus       258 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l-~~l~~~~~~~-~L~~L~l~~n~-~~~l~~~~l~~L~~L~l~~  334 (570)
T 2z63_A          258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI-ERVKDFSYNF-GWQHLELVNCK-FGQFPTLKLKSLKRLTFTS  334 (570)
T ss_dssp             EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE-CSCCBCCSCC-CCSEEEEESCB-CSSCCBCBCSSCCEEEEES
T ss_pred             chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc-hhhhhhhccC-CccEEeeccCc-ccccCcccccccCEEeCcC
Confidence                       0000000  00014566666665432 2345445555 55555555533 2233321            


Q ss_pred             --------CCCCCCccEEEeeCCCCcccc---CCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-cccccc
Q 011033          265 --------LHNLGQLQEIEIWECENLVSF---PEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLE  332 (495)
Q Consensus       265 --------~~~l~~L~~L~l~~~~~l~~l---~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~  332 (495)
                              ...+++|++|++++| .+...   +..+..+++|+.|++++|. +..++..+..+++|++|++++ .+...+
T Consensus       335 n~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~  412 (570)
T 2z63_A          335 NKGGNAFSEVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMS  412 (570)
T ss_dssp             CBSCCBCCCCBCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCT
T ss_pred             CccccccccccCCCCCEEeCcCC-ccCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCcccccc
Confidence                    033444455555444 22221   2233344555555555553 333333355566666666665 333332


Q ss_pred             C---CCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccc--cchhhhccccccCCCCCCCceeeecc
Q 011033          333 E---DGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMV--SFPLEDKRLGTALPLPASLTSLRIVD  407 (495)
Q Consensus       333 ~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~  407 (495)
                      .   ...+++|++|++++|.... ..+.   .+.++++|+.|++++|  .+.  .++..       +..+++|+.|++++
T Consensus       413 ~~~~~~~l~~L~~L~l~~n~l~~-~~~~---~~~~l~~L~~L~l~~n--~l~~~~~p~~-------~~~l~~L~~L~l~~  479 (570)
T 2z63_A          413 EFSVFLSLRNLIYLDISHTHTRV-AFNG---IFNGLSSLEVLKMAGN--SFQENFLPDI-------FTELRNLTFLDLSQ  479 (570)
T ss_dssp             TSCTTTTCTTCCEEECTTSCCEE-CCTT---TTTTCTTCCEEECTTC--EEGGGEECSC-------CTTCTTCCEEECTT
T ss_pred             chhhhhcCCCCCEEeCcCCcccc-cchh---hhhcCCcCcEEECcCC--cCccccchhh-------hhcccCCCEEECCC
Confidence            2   2345566666666665222 2222   4556666666666666  332  23322       23455677777777


Q ss_pred             ccccccc-ccccccCCCCCeEeccCCCCCCCCCCCC--CccccceeeccCCc
Q 011033          408 FPNLERL-SSSIVDLQNLTHLNLVDCPKLKYFPEKG--LPSSLLQLSIYRCP  456 (495)
Q Consensus       408 ~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~c~  456 (495)
                      | .++.+ |..+..+++|++|++++| .++.++...  .+++|++|++++|+
T Consensus       480 n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          480 C-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             S-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             C-ccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence            4 34443 556666777777777774 466655432  25677777777654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.97  E-value=4.1e-28  Score=256.25  Aligned_cols=281  Identities=16%  Similarity=0.172  Sum_probs=171.1

Q ss_pred             ccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC--CC
Q 011033           19 CSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--VA   96 (495)
Q Consensus        19 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~--~~   96 (495)
                      +++++|++++ +.++.+++.    .|.++    ++|++|++++|...+..|..++++++|++|++++| .++.+|.  ++
T Consensus        25 ~~l~~L~Ls~-n~l~~~~~~----~~~~l----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~   94 (680)
T 1ziw_A           25 TNITVLNLTH-NQLRRLPAA----NFTRY----SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFA   94 (680)
T ss_dssp             TTCSEEECCS-SCCCCCCGG----GGGGG----TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred             CCCcEEECCC-CCCCCcCHH----HHhCC----CcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhc
Confidence            6899999999 678888775    58888    99999999998554455777899999999999998 7778875  88


Q ss_pred             CCCCCcEEEEeCCCCCCccc-cccccCCCCCccEEecccCccccccccc--cCCCCccEEEeccCCCccccccccccccC
Q 011033           97 LPSKLKIIEIEGCDALKSLP-EAWMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTVEEGIQSS  173 (495)
Q Consensus        97 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  173 (495)
                      .+++|++|++++|. +..++ ..+...  ++|++|++++|. ++..+..  ..+++|+.|+++++ .++.+. +..+.  
T Consensus        95 ~l~~L~~L~L~~n~-l~~~~~~~~~~l--~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~--  166 (680)
T 1ziw_A           95 FCTNLTELHLMSNS-IQKIKNNPFVKQ--KNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNN-KIQALK-SEELD--  166 (680)
T ss_dssp             TCTTCSEEECCSSC-CCCCCSCTTTTC--TTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSS-CCCCBC-HHHHG--
T ss_pred             cCCCCCEEECCCCc-cCccChhHcccc--CCCCEEECCCCc-ccccCchhhcccccCCEEEccCC-cccccC-HHHhh--
Confidence            99999999999998 45555 455545  899999999964 4443322  57899999999985 343330 11110  


Q ss_pred             CCCccCcccCccccceeeecCCCCCccc------------------------------------------ccCCCCcccc
Q 011033          174 SSSSSNRRYTSSLLEKLEIRDCPSLTCI------------------------------------------FSQNELPATL  211 (495)
Q Consensus       174 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~------------------------------------------~~~~~~~~~~  211 (495)
                             ....++|+.|+++++ .++.+                                          +..+.+.. .
T Consensus       167 -------~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~-~  237 (680)
T 1ziw_A          167 -------IFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST-T  237 (680)
T ss_dssp             -------GGTTCEESEEECTTC-CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE-E
T ss_pred             -------ccccccccEEECCCC-cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc-c
Confidence                   011233555554442 11111                                          00000000 0


Q ss_pred             cccccCCCC-CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCcc-----cc
Q 011033          212 ESLEVGNLP-PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLV-----SF  285 (495)
Q Consensus       212 ~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~-----~l  285 (495)
                      .......+. ++|+.|++++|......+.++..+++|++|++++|......+..+.++++|+.|+++++....     .+
T Consensus       238 ~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l  317 (680)
T 1ziw_A          238 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL  317 (680)
T ss_dssp             CTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------C
T ss_pred             ChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccc
Confidence            000000010 236777777666555555566667777777776654333344556666666666665542111     11


Q ss_pred             C---C-CCCCCCCCcEEEecCccccccccccccCCCCcceeEecc
Q 011033          286 P---E-GGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG  326 (495)
Q Consensus       286 ~---~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  326 (495)
                      |   . .+..+++|+.|++++|......+..+..+++|++|++++
T Consensus       318 p~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~  362 (680)
T 1ziw_A          318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN  362 (680)
T ss_dssp             CEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTT
T ss_pred             cccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCC
Confidence            1   1 344556666666666653333334455666666666554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.97  E-value=8.8e-30  Score=262.26  Aligned_cols=128  Identities=19%  Similarity=0.187  Sum_probs=72.7

Q ss_pred             ccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC--CC
Q 011033           19 CSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--VA   96 (495)
Q Consensus        19 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~--~~   96 (495)
                      ++|++|++++ +.++.+++.    .|.++    ++|++|++++|......|..++.+++|++|++++| .++.+++  ++
T Consensus        26 ~~L~~L~Ls~-n~l~~~~~~----~~~~l----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~   95 (549)
T 2z81_A           26 AAMKSLDLSF-NKITYIGHG----DLRAC----ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFG   95 (549)
T ss_dssp             TTCCEEECCS-SCCCEECSS----TTSSC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHT
T ss_pred             CCccEEECcC-CccCccChh----hhhcC----CcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhc
Confidence            4666777766 346555443    35555    66677777666333333345666666667776666 4444443  66


Q ss_pred             CCCCCcEEEEeCCCCCC-ccccccccCCCCCccEEecccCcccccccc--ccCCCCccEEEeccC
Q 011033           97 LPSKLKIIEIEGCDALK-SLPEAWMCDTNSSLETLYIEHCRTLTYLAG--VQLPRSLKRLDILSC  158 (495)
Q Consensus        97 ~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~  158 (495)
                      .+++|++|++++|.... ..|..+...  ++|++|++++|..+..++.  ...+++|+.|+++++
T Consensus        96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n  158 (549)
T 2z81_A           96 PLSSLKYLNLMGNPYQTLGVTSLFPNL--TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL  158 (549)
T ss_dssp             TCTTCCEEECTTCCCSSSCSSCSCTTC--TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             cCCCCcEEECCCCcccccchhhhhhcc--CCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence            66666666666665222 233444333  6666666666544555442  245566666666654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=1.2e-28  Score=261.83  Aligned_cols=346  Identities=16%  Similarity=0.184  Sum_probs=258.5

Q ss_pred             HHhhhhhcccccceeecccccCCc-----------------ccccccc--CCCCccEEEEeCCCCCCCCCC-CCCCCCCc
Q 011033           43 QQQQLCELSCRLEYLRLSYCEGLV-----------------KLPQSSL--SLSSLREIEIYKCSSLVSFPE-VALPSKLK  102 (495)
Q Consensus        43 ~~~~l~~~~~~L~~L~ls~~~~l~-----------------~l~~~~~--~l~~L~~L~l~~~~~l~~l~~-~~~~~~L~  102 (495)
                      .++++    ++|++|+|++|...+                 .+|..++  ++++|++|++++|...+.+|. ++.+++|+
T Consensus       443 ~l~~L----~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~  518 (876)
T 4ecn_A          443 AIQRL----TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ  518 (876)
T ss_dssp             GGGGC----TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred             HHhcC----CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence            48888    999999999986544                 2898887  999999999999977778886 88999999


Q ss_pred             EEEEeCCCCCC--ccccccccC-----CCCCccEEecccCcccccccc---ccCCCCccEEEeccCCCcccccccccccc
Q 011033          103 IIEIEGCDALK--SLPEAWMCD-----TNSSLETLYIEHCRTLTYLAG---VQLPRSLKRLDILSCDNIRTLTVEEGIQS  172 (495)
Q Consensus       103 ~L~l~~~~~~~--~~~~~~~~~-----~~~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  172 (495)
                      .|++++|..+.  .+|..+...     .+++|+.|++++| .++.+|.   ...+++|+.|+++++ .++.+  | .+  
T Consensus       519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~l--p-~~--  591 (876)
T 4ecn_A          519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHN-KVRHL--E-AF--  591 (876)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTS-CCCBC--C-CC--
T ss_pred             EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCC-Ccccc--h-hh--
Confidence            99999997344  577766544     2258999999996 4668887   478899999999996 45555  5 33  


Q ss_pred             CCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCC-ccEEEeecCCCchhhhhhcCCCCC--CcE
Q 011033          173 SSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPS-LKSLFVWYCPKLESIAERLDNNTS--LET  249 (495)
Q Consensus       173 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~--L~~  249 (495)
                               ...++|+.|+++++ .++.+      |..     ...+ ++ |+.|++++|... .+|..+...+.  |+.
T Consensus       592 ---------~~L~~L~~L~Ls~N-~l~~l------p~~-----l~~l-~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~  648 (876)
T 4ecn_A          592 ---------GTNVKLTDLKLDYN-QIEEI------PED-----FCAF-TDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGS  648 (876)
T ss_dssp             ---------CTTSEESEEECCSS-CCSCC------CTT-----SCEE-CTTCCEEECCSSCCC-SCCSCCCTTCSSCEEE
T ss_pred             ---------cCCCcceEEECcCC-ccccc------hHH-----Hhhc-cccCCEEECcCCCCC-cCchhhhccccCCCCE
Confidence                     12567999999884 44433      211     1222 56 999999988755 77877776654  999


Q ss_pred             EeeeCCCCCCccc---ccCC--CCCCccEEEeeCCCCccccCCCC-CCCCCCcEEEecCccccccccccccC--------
Q 011033          250 INISGCENLKILP---SGLH--NLGQLQEIEIWECENLVSFPEGG-LPCAKLSKLRIYGCERLEALPKGLHN--------  315 (495)
Q Consensus       250 L~l~~~~~~~~l~---~~~~--~l~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~--------  315 (495)
                      |++++|.....+|   ..+.  .+++|+.|++++| .+..+|... ..+++|+.|++++|. ++.+|..+..        
T Consensus       649 L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~n  726 (876)
T 4ecn_A          649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKN  726 (876)
T ss_dssp             EECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTT
T ss_pred             EECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCCc-CCccChHHhccccccccc
Confidence            9999976544333   2233  3469999999998 566777644 367899999999985 5577765443        


Q ss_pred             CCCcceeEecc-ccccccCC-C--CCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccc----cc-cccchhh
Q 011033          316 LTSLQQLTIGG-ELPSLEED-G--LPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCD----DD-MVSFPLE  386 (495)
Q Consensus       316 l~~L~~L~l~~-~l~~~~~~-~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----~~-~~~~~~~  386 (495)
                      +++|+.|++++ .+..+|.. .  .+++|+.|++++|.. .. ++.   .+.++++|+.|++++|.    .. ...+|..
T Consensus       727 l~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L-~~-lp~---~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~  801 (876)
T 4ecn_A          727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF-SS-FPT---QPLNSSQLKAFGIRHQRDAEGNRILRQWPTG  801 (876)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCC-SS-CCC---GGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred             cCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCC-Cc-cch---hhhcCCCCCEEECCCCCCcccccccccChHH
Confidence            33999999999 77787765 3  689999999999974 33 343   57799999999998852    12 3334433


Q ss_pred             hccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCC
Q 011033          387 DKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPE  440 (495)
Q Consensus       387 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~  440 (495)
                      .       ..+++|+.|++++ +.++.+|..+.  ++|+.|++++|+ +..+..
T Consensus       802 l-------~~L~~L~~L~Ls~-N~L~~Ip~~l~--~~L~~LdLs~N~-l~~i~~  844 (876)
T 4ecn_A          802 I-------TTCPSLIQLQIGS-NDIRKVDEKLT--PQLYILDIADNP-NISIDV  844 (876)
T ss_dssp             G-------GGCSSCCEEECCS-SCCCBCCSCCC--SSSCEEECCSCT-TCEEEC
T ss_pred             H-------hcCCCCCEEECCC-CCCCccCHhhc--CCCCEEECCCCC-CCccCh
Confidence            3       3567999999999 46699997655  799999999976 665543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.96  E-value=2.1e-28  Score=253.24  Aligned_cols=386  Identities=15%  Similarity=0.131  Sum_probs=259.8

Q ss_pred             hcCccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccc-cccCCCCccEEEEeCCCC
Q 011033           10 SHNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQ-SSLSLSSLREIEIYKCSS   88 (495)
Q Consensus        10 ~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~-~~~~l~~L~~L~l~~~~~   88 (495)
                      .+...|.++++|++|++++ +.++.++++    .|.++    ++|++|++++| .+..++. .++.+++|++|++++| .
T Consensus        67 i~~~~~~~l~~L~~L~L~~-n~l~~~~~~----~~~~l----~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n-~  135 (570)
T 2z63_A           67 IEDGAYQSLSHLSTLILTG-NPIQSLALG----AFSGL----SSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN-L  135 (570)
T ss_dssp             ECTTTTTTCTTCCEEECTT-CCCCEECTT----TTTTC----TTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSS-C
T ss_pred             cCcccccCchhCCEEeCcC-CcCCccCHh----hhcCc----ccccccccccc-ccccCCCccccccccccEEecCCC-c
Confidence            3456688999999999999 568888764    58888    99999999998 5566654 5899999999999998 5


Q ss_pred             CCC--CCC-CCCCCCCcEEEEeCCCCCCccccccccCCCCCc----cEEecccCccccccccc-cCCCCccEEEeccCCC
Q 011033           89 LVS--FPE-VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSL----ETLYIEHCRTLTYLAGV-QLPRSLKRLDILSCDN  160 (495)
Q Consensus        89 l~~--l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L----~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~  160 (495)
                      +..  +|. ++.+++|++|++++|......+..+...  ++|    +.|+++++. ++.++.. ....+|+.|+++++..
T Consensus       136 l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~~~~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n~~  212 (570)
T 2z63_A          136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL--HQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFD  212 (570)
T ss_dssp             CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHH--HTCTTCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESCCS
T ss_pred             cceecChhhhcccCCCCEEeCcCCccceecHHHccch--hccchhhhhcccCCCC-ceecCHHHhccCcceeEecccccc
Confidence            554  454 8889999999999988444334444444  556    778887753 4443332 2223566666655310


Q ss_pred             c------------------------------cccccccccccC-----------------CCCccCcccCccccceeeec
Q 011033          161 I------------------------------RTLTVEEGIQSS-----------------SSSSSNRRYTSSLLEKLEIR  193 (495)
Q Consensus       161 l------------------------------~~~~~~~~~~~~-----------------~~~~~~~~~~~~~L~~L~l~  193 (495)
                      -                              +.+  +......                 ...........++++.++++
T Consensus       213 ~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~--~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~  290 (570)
T 2z63_A          213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF--DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV  290 (570)
T ss_dssp             CTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEEC--CTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEE
T ss_pred             cccchhhhhcCccccceeeeccccccCchhhhhc--chhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEec
Confidence            0                              000  0000000                 00000011123345555554


Q ss_pred             CCCCCccc-------------ccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCc
Q 011033          194 DCPSLTCI-------------FSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKI  260 (495)
Q Consensus       194 ~~~~l~~~-------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  260 (495)
                      ++ .++.+             +..+.+.    ..+.. ..++|+.|++.+|......+.  ..+++|++|++++|. +..
T Consensus       291 ~~-~l~~l~~~~~~~~L~~L~l~~n~~~----~l~~~-~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~-l~~  361 (570)
T 2z63_A          291 SV-TIERVKDFSYNFGWQHLELVNCKFG----QFPTL-KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNG-LSF  361 (570)
T ss_dssp             SC-EECSCCBCCSCCCCSEEEEESCBCS----SCCBC-BCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSC-CBE
T ss_pred             Cc-cchhhhhhhccCCccEEeeccCccc----ccCcc-cccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCc-cCc
Confidence            42 11111             0000000    00121 236788888887765554443  678999999999864 333


Q ss_pred             c---cccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCcccccccc-ccccCCCCcceeEecc-ccccccCC-
Q 011033          261 L---PSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALP-KGLHNLTSLQQLTIGG-ELPSLEED-  334 (495)
Q Consensus       261 l---~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~-~l~~~~~~-  334 (495)
                      .   +..+..+++|++|++++| .+..++..+..+++|+.|++++|......+ ..+..+++|++|++++ .+....+. 
T Consensus       362 ~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  440 (570)
T 2z63_A          362 KGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI  440 (570)
T ss_dssp             EEEEEHHHHTCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred             cccccccccccCccCEEECCCC-ccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhh
Confidence            3   566788999999999998 566666557788999999999987554444 3688999999999999 66554332 


Q ss_pred             -CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeecccccccc
Q 011033          335 -GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLER  413 (495)
Q Consensus       335 -~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  413 (495)
                       ..+++|++|++++|.......+.   .+..+++|+.|++++|  .+..+....      +..+++|+.|++++ +.++.
T Consensus       441 ~~~l~~L~~L~l~~n~l~~~~~p~---~~~~l~~L~~L~l~~n--~l~~~~~~~------~~~l~~L~~L~l~~-n~l~~  508 (570)
T 2z63_A          441 FNGLSSLEVLKMAGNSFQENFLPD---IFTELRNLTFLDLSQC--QLEQLSPTA------FNSLSSLQVLNMAS-NQLKS  508 (570)
T ss_dssp             TTTCTTCCEEECTTCEEGGGEECS---CCTTCTTCCEEECTTS--CCCEECTTT------TTTCTTCCEEECCS-SCCSC
T ss_pred             hhcCCcCcEEECcCCcCccccchh---hhhcccCCCEEECCCC--ccccCChhh------hhcccCCCEEeCCC-CcCCC
Confidence             55789999999999844333444   7899999999999998  666663321      23567999999999 46777


Q ss_pred             ccc-ccccCCCCCeEeccCCC
Q 011033          414 LSS-SIVDLQNLTHLNLVDCP  433 (495)
Q Consensus       414 l~~-~~~~~~~L~~L~l~~c~  433 (495)
                      ++. .+..+++|++|++++|+
T Consensus       509 ~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          509 VPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             CCTTTTTTCTTCCEEECCSSC
T ss_pred             CCHHHhhcccCCcEEEecCCc
Confidence            664 68899999999999976

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.96  E-value=8e-28  Score=259.18  Aligned_cols=410  Identities=17%  Similarity=0.106  Sum_probs=251.2

Q ss_pred             hhcCccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCC
Q 011033            9 KSHNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSS   88 (495)
Q Consensus         9 ~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~   88 (495)
                      ......|.++++|++|++++|..+..++++    .|.++    ++|++|++++|......|..++.+++|++|++++|..
T Consensus        38 ~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~----~f~~L----~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l  109 (844)
T 3j0a_A           38 TVTASSFPFLEQLQLLELGSQYTPLTIDKE----AFRNL----PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGL  109 (844)
T ss_dssp             EECSSSCSSCCSCSEEEECTTCCCCEECTT----TTSSC----TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCC
T ss_pred             ccChhHCcccccCeEEeCCCCCCccccCHH----HhcCC----CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCC
Confidence            344567888999999999997667777554    58888    9999999999855445577899999999999999843


Q ss_pred             CCCCCC---CCCCCCCcEEEEeCCCCCCccc-cccccCCCCCccEEecccCccccccccc--cCC--CC-----------
Q 011033           89 LVSFPE---VALPSKLKIIEIEGCDALKSLP-EAWMCDTNSSLETLYIEHCRTLTYLAGV--QLP--RS-----------  149 (495)
Q Consensus        89 l~~l~~---~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~--~~-----------  149 (495)
                      ...++.   ++.+++|++|++++|......+ ..+..+  ++|++|++++|. ++.+...  ..+  ++           
T Consensus       110 ~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L--~~L~~L~Ls~N~-i~~~~~~~l~~l~~~~L~~L~L~~n~l  186 (844)
T 3j0a_A          110 SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL--NSLKSIDFSSNQ-IFLVCEHELEPLQGKTLSFFSLAANSL  186 (844)
T ss_dssp             SSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC--SSCCEEEEESSC-CCCCCSGGGHHHHHCSSCCCEECCSBS
T ss_pred             CcccccCccccccCCCCEEECCCCcccccccchhHhhC--CCCCEEECCCCc-CCeeCHHHcccccCCccceEECCCCcc
Confidence            333433   7889999999999987444333 345555  889999998853 3222111  111  34           


Q ss_pred             -------------------ccEEEeccCCCccccccccccccCC---------------------------CCccCcccC
Q 011033          150 -------------------LKRLDILSCDNIRTLTVEEGIQSSS---------------------------SSSSNRRYT  183 (495)
Q Consensus       150 -------------------L~~L~l~~~~~l~~~~~~~~~~~~~---------------------------~~~~~~~~~  183 (495)
                                         |+.|+++++......  +..+....                           .........
T Consensus       187 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~  264 (844)
T 3j0a_A          187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDI--TGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA  264 (844)
T ss_dssp             CCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTT--TSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTT
T ss_pred             ccccccchhhcCCccccCceeEEecCCCcCchhH--HHHHHhhcCcccccceecccccccccccccccCCCChhhhhccc
Confidence                               444444443110000  10000000                           000000111


Q ss_pred             ccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccc
Q 011033          184 SSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPS  263 (495)
Q Consensus       184 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~  263 (495)
                      .++++.|+++++ .+..+          .. ....-.++|+.|++++|......+..+..+++|+.|++++|......+.
T Consensus       265 ~~~L~~L~Ls~n-~l~~~----------~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  332 (844)
T 3j0a_A          265 RSSVRHLDLSHG-FVFSL----------NS-RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS  332 (844)
T ss_dssp             TSCCCEEECTTC-CCCEE----------CS-CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC
T ss_pred             cCCccEEECCCC-ccccc----------Ch-hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHH
Confidence            234555555552 22222          00 0011126788888887777666666777888888888887644333356


Q ss_pred             cCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEEEecCcccccccc-------------------c------------
Q 011033          264 GLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLRIYGCERLEALP-------------------K------------  311 (495)
Q Consensus       264 ~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~-------------------~------------  311 (495)
                      .+..+++|+.|++++| .+..++. .+..+++|+.|++++|. ++.++                   .            
T Consensus       333 ~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~  410 (844)
T 3j0a_A          333 NFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA-LTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSE  410 (844)
T ss_dssp             SCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCC-SCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCS
T ss_pred             HhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCC-CCcccCCCCcchhccCCCCcccccccccccceeeccc
Confidence            6777888888888877 4555443 45566777777777764 22221                   1            


Q ss_pred             ----------cccCCCCcceeEecc-ccccccCC---CCCCccceeEeeccCccchhh-hcccccCCCCCccceEEeecc
Q 011033          312 ----------GLHNLTSLQQLTIGG-ELPSLEED---GLPTNLHSLHIWGNMEIWKSM-IERGRGFHRFSSLRHLTIEGC  376 (495)
Q Consensus       312 ----------~l~~l~~L~~L~l~~-~l~~~~~~---~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~  376 (495)
                                .+..+++|+.|++++ .+..++..   ..+++|++|++++|....... ......+.++++|+.|++++|
T Consensus       411 N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N  490 (844)
T 3j0a_A          411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN  490 (844)
T ss_dssp             CCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH
T ss_pred             CccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC
Confidence                      122456666666666 44433222   234667777777765321000 000124667788888888887


Q ss_pred             ccccccchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCCCCCccccceeeccCCc
Q 011033          377 DDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCP  456 (495)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~  456 (495)
                        .+..++...      +..+++|+.|++++ +.++.+|...-. ++|+.|++++| +++.++... +++|++|++++||
T Consensus       491 --~l~~~~~~~------~~~l~~L~~L~Ls~-N~l~~l~~~~~~-~~L~~L~Ls~N-~l~~~~~~~-~~~L~~l~l~~Np  558 (844)
T 3j0a_A          491 --YLNSLPPGV------FSHLTALRGLSLNS-NRLTVLSHNDLP-ANLEILDISRN-QLLAPNPDV-FVSLSVLDITHNK  558 (844)
T ss_dssp             --HHTTCCTTS------SSSCCSCSEEEEES-CCCSSCCCCCCC-SCCCEEEEEEE-CCCCCCSCC-CSSCCEEEEEEEC
T ss_pred             --cccccChhH------ccchhhhheeECCC-CCCCccChhhhh-ccccEEECCCC-cCCCCChhH-hCCcCEEEecCCC
Confidence              666655532      34678999999999 688888763322 89999999995 577766543 4689999999886


Q ss_pred             h
Q 011033          457 L  457 (495)
Q Consensus       457 ~  457 (495)
                      .
T Consensus       559 ~  559 (844)
T 3j0a_A          559 F  559 (844)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.96  E-value=2.1e-27  Score=239.13  Aligned_cols=348  Identities=17%  Similarity=0.205  Sum_probs=224.3

Q ss_pred             ccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCC
Q 011033           17 DICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVA   96 (495)
Q Consensus        17 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~   96 (495)
                      .+++++.|+++++ .++.++.      +..+    ++|++|++++| .+..++. +..+++|++|++++| .+..++.++
T Consensus        44 ~l~~l~~L~l~~~-~i~~l~~------~~~l----~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~  109 (466)
T 1o6v_A           44 DLDQVTTLQADRL-GIKSIDG------VEYL----NNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNN-QIADITPLA  109 (466)
T ss_dssp             HHHTCCEEECCSS-CCCCCTT------GGGC----TTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGT
T ss_pred             HhccccEEecCCC-CCccCcc------hhhh----cCCCEEECCCC-ccCCchh-hhccccCCEEECCCC-ccccChhhc
Confidence            3678999999984 6777654      6666    99999999997 5566665 888999999999987 666666688


Q ss_pred             CCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccccCCCCccEEEeccCCCccccccccccccCCCC
Q 011033           97 LPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSS  176 (495)
Q Consensus        97 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  176 (495)
                      .+++|++|++++|. +..++. +...  ++|++|++++| .+..++....+++|+.|.+.+  .+..+  +. +      
T Consensus       110 ~l~~L~~L~L~~n~-l~~~~~-~~~l--~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~--~~~~~--~~-~------  173 (466)
T 1o6v_A          110 NLTNLTGLTLFNNQ-ITDIDP-LKNL--TNLNRLELSSN-TISDISALSGLTSLQQLSFGN--QVTDL--KP-L------  173 (466)
T ss_dssp             TCTTCCEEECCSSC-CCCCGG-GTTC--TTCSEEEEEEE-EECCCGGGTTCTTCSEEEEEE--SCCCC--GG-G------
T ss_pred             CCCCCCEEECCCCC-CCCChH-HcCC--CCCCEEECCCC-ccCCChhhccCCcccEeecCC--cccCc--hh-h------
Confidence            89999999999987 555654 4434  88999999885 466666667788888888864  22222  11 1      


Q ss_pred             ccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCC
Q 011033          177 SSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCE  256 (495)
Q Consensus       177 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  256 (495)
                           ...++|+.|+++++. ++.+             +...-.++|++|++++|...+..+  +..+++|++|++++|.
T Consensus       174 -----~~l~~L~~L~l~~n~-l~~~-------------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~  232 (466)
T 1o6v_A          174 -----ANLTTLERLDISSNK-VSDI-------------SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ  232 (466)
T ss_dssp             -----TTCTTCCEEECCSSC-CCCC-------------GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred             -----ccCCCCCEEECcCCc-CCCC-------------hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCC
Confidence                 124567777777742 3332             111122667777777666554433  5567777777777743


Q ss_pred             CCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCCC
Q 011033          257 NLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEEDG  335 (495)
Q Consensus       257 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~  335 (495)
                       +..+ ..+..+++|++|++++| .+..++. +..+++|+.|++++|. +..++. +..+++|++|++++ .+..++...
T Consensus       233 -l~~~-~~l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~  306 (466)
T 1o6v_A          233 -LKDI-GTLASLTNLTDLDLANN-QISNLAP-LSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQLEDISPIS  306 (466)
T ss_dssp             -CCCC-GGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCSCCGGGG
T ss_pred             -cccc-hhhhcCCCCCEEECCCC-ccccchh-hhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCcccCchhhc
Confidence             4444 24566777777777776 3444333 4556677777777764 444443 66777777777777 666655555


Q ss_pred             CCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeecccccccccc
Q 011033          336 LPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLS  415 (495)
Q Consensus       336 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~  415 (495)
                      .+++|++|++++|.. ....     .+..+++|+.|++++|  .+..++.-        ..+++|+.|++++| .++.++
T Consensus       307 ~l~~L~~L~L~~n~l-~~~~-----~~~~l~~L~~L~l~~n--~l~~~~~l--------~~l~~L~~L~l~~n-~l~~~~  369 (466)
T 1o6v_A          307 NLKNLTYLTLYFNNI-SDIS-----PVSSLTKLQRLFFYNN--KVSDVSSL--------ANLTNINWLSAGHN-QISDLT  369 (466)
T ss_dssp             GCTTCSEEECCSSCC-SCCG-----GGGGCTTCCEEECCSS--CCCCCGGG--------TTCTTCCEEECCSS-CCCBCG
T ss_pred             CCCCCCEEECcCCcC-CCch-----hhccCccCCEeECCCC--ccCCchhh--------ccCCCCCEEeCCCC-ccCccc
Confidence            566777777777752 2121     1456677777777776  45544322        24556777777764 344443


Q ss_pred             cccccCCCCCeEeccCCCCCCCCCC
Q 011033          416 SSIVDLQNLTHLNLVDCPKLKYFPE  440 (495)
Q Consensus       416 ~~~~~~~~L~~L~l~~c~~l~~l~~  440 (495)
                      . +..+++|++|++++|+ +..+|.
T Consensus       370 ~-~~~l~~L~~L~l~~n~-~~~~p~  392 (466)
T 1o6v_A          370 P-LANLTRITQLGLNDQA-WTNAPV  392 (466)
T ss_dssp             G-GTTCTTCCEEECCCEE-EECCCB
T ss_pred             h-hhcCCCCCEEeccCCc-ccCCch
Confidence            2 6667777777777743 444443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.96  E-value=9.5e-28  Score=247.06  Aligned_cols=410  Identities=17%  Similarity=0.190  Sum_probs=257.0

Q ss_pred             cCccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCcccc-ccccCCCCccEEEEeCCCCC
Q 011033           11 HNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLP-QSSLSLSSLREIEIYKCSSL   89 (495)
Q Consensus        11 ~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l   89 (495)
                      ....|.++++|++|++++ +.++.++++    .|.++    ++|++|++++|.. ..++ ..++.+++|++|++++| .+
T Consensus        42 ~~~~~~~l~~L~~L~Ls~-n~i~~~~~~----~~~~l----~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n-~l  110 (549)
T 2z81_A           42 GHGDLRACANLQVLILKS-SRINTIEGD----AFYSL----GSLEHLDLSDNHL-SSLSSSWFGPLSSLKYLNLMGN-PY  110 (549)
T ss_dssp             CSSTTSSCTTCCEEECTT-SCCCEECTT----TTTTC----TTCCEEECTTSCC-CSCCHHHHTTCTTCCEEECTTC-CC
T ss_pred             ChhhhhcCCcccEEECCC-CCcCccChh----hcccc----ccCCEEECCCCcc-CccCHHHhccCCCCcEEECCCC-cc
Confidence            355678899999999999 578877764    57888    9999999999844 5444 45889999999999998 55


Q ss_pred             CCC--C-CCCCCCCCcEEEEeCCCCCCcccc-ccccCCCCCccEEecccCccccccccc-cCCCCccEEEeccCCC----
Q 011033           90 VSF--P-EVALPSKLKIIEIEGCDALKSLPE-AWMCDTNSSLETLYIEHCRTLTYLAGV-QLPRSLKRLDILSCDN----  160 (495)
Q Consensus        90 ~~l--~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~----  160 (495)
                      +.+  + .++.+++|++|++++|..++.+|. .+...  ++|++|++++|..-...+.. ..+++|+.|+++++..    
T Consensus       111 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~  188 (549)
T 2z81_A          111 QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL--TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL  188 (549)
T ss_dssp             SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC--CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHH
T ss_pred             cccchhhhhhccCCccEEECCCCccccccCHhhhhcc--cccCeeeccCCcccccChhhhhccccCceEecccCcccccc
Confidence            533  3 378899999999999876666664 44444  88999999886432223332 4455666666554321    


Q ss_pred             ---------ccccccccccccCCC-CccCcccCccccceeeecCCC-----------------CCccc-ccCCCCcc--c
Q 011033          161 ---------IRTLTVEEGIQSSSS-SSSNRRYTSSLLEKLEIRDCP-----------------SLTCI-FSQNELPA--T  210 (495)
Q Consensus       161 ---------l~~~~~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~-----------------~l~~~-~~~~~~~~--~  210 (495)
                               ++.+++...--.... .........++++.|++.++.                 .++.+ +..+...+  .
T Consensus       189 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~  268 (549)
T 2z81_A          189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD  268 (549)
T ss_dssp             HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSC
T ss_pred             hhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccc
Confidence                     111100000000000 000000012234444433310                 00000 00000000  0


Q ss_pred             ccc--cccCCCCCCccEEEeecCCCchh-----hhhhcCCCCCCcEEeeeCCCCCCcccccC-CCCCCccEEEeeCCCCc
Q 011033          211 LES--LEVGNLPPSLKSLFVWYCPKLES-----IAERLDNNTSLETINISGCENLKILPSGL-HNLGQLQEIEIWECENL  282 (495)
Q Consensus       211 ~~~--~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~l~~~~-~~l~~L~~L~l~~~~~l  282 (495)
                      +..  .......++++.+.+.++.....     ++..+...++|+.|++++| .+..+|..+ ..+++|++|++++|...
T Consensus       269 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~~ip~~~~~~l~~L~~L~Ls~N~l~  347 (549)
T 2z81_A          269 FNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-KVFLVPCSFSQHLKSLEFLDLSENLMV  347 (549)
T ss_dssp             CCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS-CCCCCCHHHHHHCTTCCEEECCSSCCC
T ss_pred             ccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC-ccccCCHHHHhcCccccEEEccCCccc
Confidence            000  00001124566666654432211     1111223467889999885 466777665 46899999999998544


Q ss_pred             cccC---CCCCCCCCCcEEEecCcccccccc---ccccCCCCcceeEecc-ccccccCC-CCCCccceeEeeccCccchh
Q 011033          283 VSFP---EGGLPCAKLSKLRIYGCERLEALP---KGLHNLTSLQQLTIGG-ELPSLEED-GLPTNLHSLHIWGNMEIWKS  354 (495)
Q Consensus       283 ~~l~---~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~-~l~~~~~~-~~~~~L~~L~l~~~~~~~~~  354 (495)
                      ..++   ..+..+++|+.|++++|. ++.++   ..+..+++|++|++++ .+..+|.. ..+++|++|++++|.. ...
T Consensus       348 ~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l-~~l  425 (549)
T 2z81_A          348 EEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI-RVV  425 (549)
T ss_dssp             HHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCC-SCC
T ss_pred             cccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCc-ccc
Confidence            4442   345677899999999986 45443   3578899999999999 78777764 5678999999999973 211


Q ss_pred             hhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCC
Q 011033          355 MIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPK  434 (495)
Q Consensus       355 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~  434 (495)
                       +.   .+  .++|+.|++++|  .+..++.          .+++|+.|++++ ++++.+|. ...+++|++|++++| .
T Consensus       426 -~~---~~--~~~L~~L~Ls~N--~l~~~~~----------~l~~L~~L~Ls~-N~l~~ip~-~~~l~~L~~L~Ls~N-~  484 (549)
T 2z81_A          426 -KT---CI--PQTLEVLDVSNN--NLDSFSL----------FLPRLQELYISR-NKLKTLPD-ASLFPVLLVMKISRN-Q  484 (549)
T ss_dssp             -CT---TS--CTTCSEEECCSS--CCSCCCC----------CCTTCCEEECCS-SCCSSCCC-GGGCTTCCEEECCSS-C
T ss_pred             -cc---hh--cCCceEEECCCC--Chhhhcc----------cCChhcEEECCC-CccCcCCC-cccCccCCEEecCCC-c
Confidence             11   11  258999999998  6666542          457899999999 57888885 567899999999995 5


Q ss_pred             CCCCCCC--CCccccceeeccCCch
Q 011033          435 LKYFPEK--GLPSSLLQLSIYRCPL  457 (495)
Q Consensus       435 l~~l~~~--~~~~~L~~L~l~~c~~  457 (495)
                      ++.++..  ..+++|++|++++|+.
T Consensus       485 l~~~~~~~~~~l~~L~~L~l~~N~~  509 (549)
T 2z81_A          485 LKSVPDGIFDRLTSLQKIWLHTNPW  509 (549)
T ss_dssp             CCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred             cCCcCHHHHhcCcccCEEEecCCCc
Confidence            8777764  3378999999999873

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.96  E-value=2e-27  Score=245.04  Aligned_cols=402  Identities=15%  Similarity=0.097  Sum_probs=230.4

Q ss_pred             ccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCC
Q 011033           19 CSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALP   98 (495)
Q Consensus        19 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~   98 (495)
                      ++|++|++++ +.++.++++    .|.++    ++|++|++++|...+..|..+..+++|++|++++| .++.+|.. .+
T Consensus        52 ~~L~~L~Ls~-N~i~~~~~~----~~~~l----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~l  120 (562)
T 3a79_B           52 PRTKALSLSQ-NSISELRMP----DISFL----SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC-PM  120 (562)
T ss_dssp             TTCCEEECCS-SCCCCCCGG----GTTTC----TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC-CC
T ss_pred             CCcCEEECCC-CCccccChh----hhccC----CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc-cc
Confidence            5677777777 456666543    46666    77777777776332333555677777777777776 56666655 67


Q ss_pred             CCCcEEEEeCCCCCCcc--ccccccCCCCCccEEecccCccccccccccCCCCc--cEEEeccCCC--cccccccccccc
Q 011033           99 SKLKIIEIEGCDALKSL--PEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSL--KRLDILSCDN--IRTLTVEEGIQS  172 (495)
Q Consensus        99 ~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L--~~L~l~~~~~--l~~~~~~~~~~~  172 (495)
                      ++|++|++++|. +..+  |..+...  ++|++|+++++ .++.. ....+++|  +.|+++++..  ....  +..+..
T Consensus       121 ~~L~~L~Ls~N~-l~~l~~p~~~~~l--~~L~~L~L~~n-~l~~~-~~~~l~~L~L~~L~L~~n~l~~~~~~--~~~l~~  193 (562)
T 3a79_B          121 ASLRHLDLSFND-FDVLPVCKEFGNL--TKLTFLGLSAA-KFRQL-DLLPVAHLHLSCILLDLVSYHIKGGE--TESLQI  193 (562)
T ss_dssp             TTCSEEECCSSC-CSBCCCCGGGGGC--TTCCEEEEECS-BCCTT-TTGGGTTSCEEEEEEEESSCCCCSSS--CCEEEE
T ss_pred             ccCCEEECCCCC-ccccCchHhhccc--CcccEEecCCC-ccccC-chhhhhhceeeEEEeecccccccccC--cccccc
Confidence            777777777766 3333  3455544  66777777764 33321 11223344  7777666422  1111  111110


Q ss_pred             CC----------CC-----ccCcccCccccceeeecCCC-----------------CCccc-ccCCCCcc-cccccccCC
Q 011033          173 SS----------SS-----SSNRRYTSSLLEKLEIRDCP-----------------SLTCI-FSQNELPA-TLESLEVGN  218 (495)
Q Consensus       173 ~~----------~~-----~~~~~~~~~~L~~L~l~~~~-----------------~l~~~-~~~~~~~~-~~~~~~~~~  218 (495)
                      -.          +.     ........++++.+++++..                 .++.+ +....+.+ .+.......
T Consensus       194 l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~  273 (562)
T 3a79_B          194 PNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF  273 (562)
T ss_dssp             CCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH
T ss_pred             cCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh
Confidence            00          00     00000012234444444321                 00000 00000000 000000000


Q ss_pred             CCCCccEEEeecCCCchhhhhhc-----CCCCCCcEEeeeCCCCCCccc-ccCC---CCCCccEEEeeCCCCccccCCCC
Q 011033          219 LPPSLKSLFVWYCPKLESIAERL-----DNNTSLETINISGCENLKILP-SGLH---NLGQLQEIEIWECENLVSFPEGG  289 (495)
Q Consensus       219 ~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~l~-~~~~---~l~~L~~L~l~~~~~l~~l~~~~  289 (495)
                      ..++|++|++++|...+.+|..+     ..++.|+.+++..+..  .+| .++.   ...+|++|++++|. +.... ..
T Consensus       274 ~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~-~~~~~-~~  349 (562)
T 3a79_B          274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTP-FIHMV-CP  349 (562)
T ss_dssp             TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSC-CCCCC-CC
T ss_pred             hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCC-ccccc-Cc
Confidence            01245555555444333444333     3333333333333211  222 1111   11457777777773 32222 12


Q ss_pred             CCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccC----CCCCCccceeEeeccCccchhhhcccccCCC
Q 011033          290 LPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEE----DGLPTNLHSLHIWGNMEIWKSMIERGRGFHR  364 (495)
Q Consensus       290 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  364 (495)
                      ..+++|+.|++++|.....+|..+..+++|++|++++ .+..++.    ...+++|++|++++|.. ...++.  ..+..
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~--~~~~~  426 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL-NSHAYD--RTCAW  426 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCC-BSCCSS--CCCCC
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcC-CCccCh--hhhcC
Confidence            5678999999999986666788899999999999999 7766542    35678999999999984 332333  35788


Q ss_pred             CCccceEEeeccccccccchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCCC--C
Q 011033          365 FSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEK--G  442 (495)
Q Consensus       365 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~--~  442 (495)
                      +++|++|++++|  .+.......        .+++|+.|++++ +.++.+|..+..+++|++|++++ +.++.+|..  .
T Consensus       427 l~~L~~L~l~~n--~l~~~~~~~--------l~~~L~~L~L~~-N~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~~~~  494 (562)
T 3a79_B          427 AESILVLNLSSN--MLTGSVFRC--------LPPKVKVLDLHN-NRIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVFD  494 (562)
T ss_dssp             CTTCCEEECCSS--CCCGGGGSS--------CCTTCSEEECCS-SCCCCCCTTTTSSCCCSEEECCS-SCCCCCCTTSTT
T ss_pred             cccCCEEECCCC--CCCcchhhh--------hcCcCCEEECCC-CcCcccChhhcCCCCCCEEECCC-CCCCCCCHHHHh
Confidence            899999999998  554322221        336999999999 58899998777999999999999 568899885  3


Q ss_pred             CccccceeeccCCch
Q 011033          443 LPSSLLQLSIYRCPL  457 (495)
Q Consensus       443 ~~~~L~~L~l~~c~~  457 (495)
                      .+++|++|++++||.
T Consensus       495 ~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          495 RLTSLQYIWLHDNPW  509 (562)
T ss_dssp             TCTTCCCEECCSCCB
T ss_pred             cCCCCCEEEecCCCc
Confidence            478999999999973

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.95  E-value=1.2e-26  Score=231.61  Aligned_cols=345  Identities=26%  Similarity=0.281  Sum_probs=194.2

Q ss_pred             ccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCc-------------cEEEE
Q 011033           17 DICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSL-------------REIEI   83 (495)
Q Consensus        17 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L-------------~~L~l   83 (495)
                      +...|++|++++ +.++.+|++     ++++    ++|++|++++|...+.+|..++++++|             ++|++
T Consensus         9 ~~~~L~~L~l~~-n~l~~iP~~-----i~~L----~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l   78 (454)
T 1jl5_A            9 SNTFLQEPLRHS-SNLTEMPVE-----AENV----KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELEL   78 (454)
T ss_dssp             -----------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEEC
T ss_pred             ccccchhhhccc-CchhhCChh-----Hhcc----cchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEe
Confidence            357899999999 567888775     8888    999999999987666888888888765             89999


Q ss_pred             eCCCCCCCCCCCCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccccCCCCccEEEeccCCCccc
Q 011033           84 YKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRT  163 (495)
Q Consensus        84 ~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~  163 (495)
                      ++| .++.+|.  .+++|++|++++|. +..+|..   .  ++|++|++++| .++.++.  .+++|+.|+++++ .++.
T Consensus        79 ~~~-~l~~lp~--~~~~L~~L~l~~n~-l~~lp~~---~--~~L~~L~l~~n-~l~~l~~--~~~~L~~L~L~~n-~l~~  145 (454)
T 1jl5_A           79 NNL-GLSSLPE--LPPHLESLVASCNS-LTELPEL---P--QSLKSLLVDNN-NLKALSD--LPPLLEYLGVSNN-QLEK  145 (454)
T ss_dssp             TTS-CCSCCCS--CCTTCSEEECCSSC-CSSCCCC---C--TTCCEEECCSS-CCSCCCS--CCTTCCEEECCSS-CCSS
T ss_pred             cCC-ccccCCC--CcCCCCEEEccCCc-CCccccc---c--CCCcEEECCCC-ccCcccC--CCCCCCEEECcCC-CCCC
Confidence            998 6777775  35789999999887 4557653   2  67889998885 4555553  2368888888885 4554


Q ss_pred             cccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCC
Q 011033          164 LTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDN  243 (495)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  243 (495)
                      +  |+ +           ...++++.|+++++ .++.+             +  ..+++|++|++++|.... +| .+..
T Consensus       146 l--p~-~-----------~~l~~L~~L~l~~N-~l~~l-------------p--~~~~~L~~L~L~~n~l~~-l~-~~~~  193 (454)
T 1jl5_A          146 L--PE-L-----------QNSSFLKIIDVDNN-SLKKL-------------P--DLPPSLEFIAAGNNQLEE-LP-ELQN  193 (454)
T ss_dssp             C--CC-C-----------TTCTTCCEEECCSS-CCSCC-------------C--CCCTTCCEEECCSSCCSS-CC-CCTT
T ss_pred             C--cc-c-----------CCCCCCCEEECCCC-cCccc-------------C--CCcccccEEECcCCcCCc-Cc-cccC
Confidence            4  42 2           12456888888774 44433             1  122578888888765443 44 4777


Q ss_pred             CCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeE
Q 011033          244 NTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLT  323 (495)
Q Consensus       244 ~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  323 (495)
                      +++|+.|++++|. +..+|...   ++|++|++++| .++.+|. +..+++|+.|++++|. ++.+|..   +++|++|+
T Consensus       194 l~~L~~L~l~~N~-l~~l~~~~---~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~l~~N~-l~~l~~~---~~~L~~L~  263 (454)
T 1jl5_A          194 LPFLTAIYADNNS-LKKLPDLP---LSLESIVAGNN-ILEELPE-LQNLPFLTTIYADNNL-LKTLPDL---PPSLEALN  263 (454)
T ss_dssp             CTTCCEEECCSSC-CSSCCCCC---TTCCEEECCSS-CCSSCCC-CTTCTTCCEEECCSSC-CSSCCSC---CTTCCEEE
T ss_pred             CCCCCEEECCCCc-CCcCCCCc---CcccEEECcCC-cCCcccc-cCCCCCCCEEECCCCc-CCccccc---ccccCEEE
Confidence            7888888887753 44444322   47777777777 4556663 5566777777777764 4445532   36677777


Q ss_pred             ecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCce
Q 011033          324 IGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTS  402 (495)
Q Consensus       324 l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  402 (495)
                      +++ .+..++.  .+++|++|++++|....  ++.      -.++|+.|++++|  .+..++.          .+++|+.
T Consensus       264 l~~N~l~~l~~--~~~~L~~L~ls~N~l~~--l~~------~~~~L~~L~l~~N--~l~~i~~----------~~~~L~~  321 (454)
T 1jl5_A          264 VRDNYLTDLPE--LPQSLTFLDVSENIFSG--LSE------LPPNLYYLNASSN--EIRSLCD----------LPPSLEE  321 (454)
T ss_dssp             CCSSCCSCCCC--CCTTCCEEECCSSCCSE--ESC------CCTTCCEEECCSS--CCSEECC----------CCTTCCE
T ss_pred             CCCCcccccCc--ccCcCCEEECcCCccCc--ccC------cCCcCCEEECcCC--cCCcccC----------CcCcCCE
Confidence            776 5555543  24667777777665211  000      1135555555555  3333321          2234555


Q ss_pred             eeecccccccccccccccCCCCCeEeccCCCCCCCCCCCCCccccceeeccCC
Q 011033          403 LRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRC  455 (495)
Q Consensus       403 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c  455 (495)
                      |++++ +.++.+|..   +++|++|++++| .++.+|.  .+++|++|++++|
T Consensus       322 L~Ls~-N~l~~lp~~---~~~L~~L~L~~N-~l~~lp~--~l~~L~~L~L~~N  367 (454)
T 1jl5_A          322 LNVSN-NKLIELPAL---PPRLERLIASFN-HLAEVPE--LPQNLKQLHVEYN  367 (454)
T ss_dssp             EECCS-SCCSCCCCC---CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS
T ss_pred             EECCC-Ccccccccc---CCcCCEEECCCC-ccccccc--hhhhccEEECCCC
Confidence            55555 334444422   344555555542 3444444  3444555555544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=2.5e-26  Score=231.16  Aligned_cols=329  Identities=16%  Similarity=0.208  Sum_probs=255.1

Q ss_pred             cccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCC
Q 011033           14 LLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFP   93 (495)
Q Consensus        14 ~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~   93 (495)
                      .+..+++|++|++++| .++.+++      +.++    ++|++|++++| .+..++. ++.+++|++|++++| .++.++
T Consensus        63 ~~~~l~~L~~L~Ls~n-~l~~~~~------~~~l----~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~  128 (466)
T 1o6v_A           63 GVEYLNNLTQINFSNN-QLTDITP------LKNL----TKLVDILMNNN-QIADITP-LANLTNLTGLTLFNN-QITDID  128 (466)
T ss_dssp             TGGGCTTCCEEECCSS-CCCCCGG------GTTC----TTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCG
T ss_pred             chhhhcCCCEEECCCC-ccCCchh------hhcc----ccCCEEECCCC-ccccChh-hcCCCCCCEEECCCC-CCCCCh
Confidence            4678999999999994 6877654      7777    99999999998 5566665 899999999999998 788887


Q ss_pred             CCCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccccCCCCccEEEeccCCCccccccccccccC
Q 011033           94 EVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSS  173 (495)
Q Consensus        94 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  173 (495)
                      .+..+++|++|++++|. +..++. +...  ++|+.|++.+  .+..++....+++|+.|+++++ .++.+  +. +   
T Consensus       129 ~~~~l~~L~~L~l~~n~-l~~~~~-~~~l--~~L~~L~l~~--~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~-l---  195 (466)
T 1o6v_A          129 PLKNLTNLNRLELSSNT-ISDISA-LSGL--TSLQQLSFGN--QVTDLKPLANLTTLERLDISSN-KVSDI--SV-L---  195 (466)
T ss_dssp             GGTTCTTCSEEEEEEEE-ECCCGG-GTTC--TTCSEEEEEE--SCCCCGGGTTCTTCCEEECCSS-CCCCC--GG-G---
T ss_pred             HHcCCCCCCEEECCCCc-cCCChh-hccC--CcccEeecCC--cccCchhhccCCCCCEEECcCC-cCCCC--hh-h---
Confidence            79999999999999987 555554 4434  8999999964  4555666678899999999986 45444  21 1   


Q ss_pred             CCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeee
Q 011033          174 SSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINIS  253 (495)
Q Consensus       174 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  253 (495)
                              ...++|+.|+++++ .++..             ......++|+.|++++|...+ + ..+..+++|+.|+++
T Consensus       196 --------~~l~~L~~L~l~~n-~l~~~-------------~~~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~  251 (466)
T 1o6v_A          196 --------AKLTNLESLIATNN-QISDI-------------TPLGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLA  251 (466)
T ss_dssp             --------GGCTTCSEEECCSS-CCCCC-------------GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECC
T ss_pred             --------ccCCCCCEEEecCC-ccccc-------------ccccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECC
Confidence                    23567999999885 34333             112234889999999887554 3 347789999999999


Q ss_pred             CCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-cccccc
Q 011033          254 GCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLE  332 (495)
Q Consensus       254 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~  332 (495)
                      +|. +..++. +..+++|+.|++++| .+..++. +..+++|+.|++++|. ++.++. +..+++|+.|++++ .+..++
T Consensus       252 ~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~  325 (466)
T 1o6v_A          252 NNQ-ISNLAP-LSGLTKLTELKLGAN-QISNISP-LAGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFNNISDIS  325 (466)
T ss_dssp             SSC-CCCCGG-GTTCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSSCCSCCG
T ss_pred             CCc-cccchh-hhcCCCCCEEECCCC-ccCcccc-ccCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCCcCCCch
Confidence            965 444443 788999999999998 5565555 6678899999999986 555554 78999999999999 777776


Q ss_pred             CCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccc
Q 011033          333 EDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLE  412 (495)
Q Consensus       333 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  412 (495)
                      +...+++|++|++++|.. ...  .   .+.++++|+.|++++|  .+..++.-        ..+++|+.|++++ +.+.
T Consensus       326 ~~~~l~~L~~L~l~~n~l-~~~--~---~l~~l~~L~~L~l~~n--~l~~~~~~--------~~l~~L~~L~l~~-n~~~  388 (466)
T 1o6v_A          326 PVSSLTKLQRLFFYNNKV-SDV--S---SLANLTNINWLSAGHN--QISDLTPL--------ANLTRITQLGLND-QAWT  388 (466)
T ss_dssp             GGGGCTTCCEEECCSSCC-CCC--G---GGTTCTTCCEEECCSS--CCCBCGGG--------TTCTTCCEEECCC-EEEE
T ss_pred             hhccCccCCEeECCCCcc-CCc--h---hhccCCCCCEEeCCCC--ccCccchh--------hcCCCCCEEeccC-Cccc
Confidence            667789999999999973 322  2   4788999999999998  66555542        2567999999999 5666


Q ss_pred             cccc
Q 011033          413 RLSS  416 (495)
Q Consensus       413 ~l~~  416 (495)
                      .+|.
T Consensus       389 ~~p~  392 (466)
T 1o6v_A          389 NAPV  392 (466)
T ss_dssp             CCCB
T ss_pred             CCch
Confidence            6664

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.95  E-value=1.9e-26  Score=223.12  Aligned_cols=300  Identities=15%  Similarity=0.177  Sum_probs=147.5

Q ss_pred             cccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEe
Q 011033           52 CRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLY  131 (495)
Q Consensus        52 ~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  131 (495)
                      ++|+.|+++++ .+..++. +..+++|++|++++| .++.++.+..+++|++|++++|. +..++ .+...  ++|++|+
T Consensus        44 ~~L~~L~l~~~-~i~~~~~-~~~~~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~L~~n~-i~~~~-~~~~l--~~L~~L~  116 (347)
T 4fmz_A           44 ESITKLVVAGE-KVASIQG-IEYLTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTNK-ITDIS-ALQNL--TNLRELY  116 (347)
T ss_dssp             TTCSEEECCSS-CCCCCTT-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCG-GGTTC--TTCSEEE
T ss_pred             ccccEEEEeCC-ccccchh-hhhcCCccEEEccCC-ccccchhhhcCCcCCEEEccCCc-ccCch-HHcCC--CcCCEEE
Confidence            55555555554 3344443 455555555555555 44444445555555555555554 33333 22222  5555555


Q ss_pred             cccCccccccccccCCCCccEEEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccc
Q 011033          132 IEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATL  211 (495)
Q Consensus       132 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  211 (495)
                      +++| .++.++....+++|+.|++++|.....+  +. +           ...                           
T Consensus       117 l~~n-~i~~~~~~~~l~~L~~L~l~~n~~~~~~--~~-~-----------~~l---------------------------  154 (347)
T 4fmz_A          117 LNED-NISDISPLANLTKMYSLNLGANHNLSDL--SP-L-----------SNM---------------------------  154 (347)
T ss_dssp             CTTS-CCCCCGGGTTCTTCCEEECTTCTTCCCC--GG-G-----------TTC---------------------------
T ss_pred             CcCC-cccCchhhccCCceeEEECCCCCCcccc--cc-h-----------hhC---------------------------
Confidence            5553 2444444444555555555554333222  10 0           001                           


Q ss_pred             cccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCC
Q 011033          212 ESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLP  291 (495)
Q Consensus       212 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~  291 (495)
                               ++|+.|++++|......+  +..+++|++|++++| .+..++. +..+++|+.|++++| .+..++. +..
T Consensus       155 ---------~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~  219 (347)
T 4fmz_A          155 ---------TGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN-QIEDISP-LASLTSLHYFTAYVN-QITDITP-VAN  219 (347)
T ss_dssp             ---------TTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GGG
T ss_pred             ---------CCCcEEEecCCCcCCchh--hccCCCCCEEEccCC-ccccccc-ccCCCccceeecccC-CCCCCch-hhc
Confidence                     233333333332221111  334444444544443 2222322 344455555555544 2222222 334


Q ss_pred             CCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccce
Q 011033          292 CAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRH  370 (495)
Q Consensus       292 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~  370 (495)
                      +++|+.|++++|. ++.++. +..+++|++|++++ .+..++....+++|++|++++|.. ...  .   .+..+++|+.
T Consensus       220 ~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l-~~~--~---~~~~l~~L~~  291 (347)
T 4fmz_A          220 MTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQI-SDI--S---VLNNLSQLNS  291 (347)
T ss_dssp             CTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC-CCC--G---GGGGCTTCSE
T ss_pred             CCcCCEEEccCCc-cCCCcc-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCcc-CCC--h---hhcCCCCCCE
Confidence            4455555555543 333332 45555555555555 444444344556666666666642 211  1   3566777777


Q ss_pred             EEeeccccccccchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCC
Q 011033          371 LTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCP  433 (495)
Q Consensus       371 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~  433 (495)
                      |++++|  .+.......      +..+++|+.|++++| .++.++. +..+++|++|++++|+
T Consensus       292 L~L~~n--~l~~~~~~~------l~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          292 LFLNNN--QLGNEDMEV------IGGLTNLTTLFLSQN-HITDIRP-LASLSKMDSADFANQV  344 (347)
T ss_dssp             EECCSS--CCCGGGHHH------HHTCTTCSEEECCSS-SCCCCGG-GGGCTTCSEESSSCC-
T ss_pred             EECcCC--cCCCcChhH------hhccccCCEEEccCC-ccccccC-hhhhhccceeehhhhc
Confidence            888777  444433321      123567888888884 4666653 7788889999888865

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=2.5e-27  Score=242.22  Aligned_cols=377  Identities=15%  Similarity=0.096  Sum_probs=253.7

Q ss_pred             CccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCC
Q 011033           12 NELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVS   91 (495)
Q Consensus        12 ~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~   91 (495)
                      ...|.++++|++|++++ +.++.+.++    .|+++    ++|++|++++| .+..+|..  .+++|++|++++| .++.
T Consensus        38 ~~~~~~l~~L~~L~Ls~-n~l~~~~~~----~~~~l----~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L~~N-~l~~  104 (520)
T 2z7x_B           38 TSDILSLSKLRILIISH-NRIQYLDIS----VFKFN----QELEYLDLSHN-KLVKISCH--PTVNLKHLDLSFN-AFDA  104 (520)
T ss_dssp             HHHHTTCTTCCEEECCS-SCCCEEEGG----GGTTC----TTCCEEECCSS-CCCEEECC--CCCCCSEEECCSS-CCSS
T ss_pred             hhhccccccccEEecCC-CccCCcChH----Hhhcc----cCCCEEecCCC-ceeecCcc--ccCCccEEeccCC-cccc
Confidence            35678899999999999 578887654    58888    99999999998 56788875  8999999999998 5554


Q ss_pred             --CCC-CCCCCCCcEEEEeCCCCCCccccccccCCCCCc--cEEecccCcc--ccccccc--------------------
Q 011033           92 --FPE-VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSL--ETLYIEHCRT--LTYLAGV--------------------  144 (495)
Q Consensus        92 --l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--l~~~~~~--------------------  144 (495)
                        +|. ++.+++|++|++++|....   ..+...  ++|  +.|++++|..  ....+..                    
T Consensus       105 ~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l--~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~  179 (520)
T 2z7x_B          105 LPICKEFGNMSQLKFLGLSTTHLEK---SSVLPI--AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFH  179 (520)
T ss_dssp             CCCCGGGGGCTTCCEEEEEESSCCG---GGGGGG--TTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCC
T ss_pred             ccchhhhccCCcceEEEecCcccch---hhcccc--ccceeeEEEeecccccccccccccccccccceEEEEeccCcchh
Confidence              443 8899999999999987433   233333  566  9999988643  1111111                    


Q ss_pred             -------cCCCCccEEEeccCCCccccc-ccc---ccccCCCCc----------------cCcccCccccceeeecCCCC
Q 011033          145 -------QLPRSLKRLDILSCDNIRTLT-VEE---GIQSSSSSS----------------SNRRYTSSLLEKLEIRDCPS  197 (495)
Q Consensus       145 -------~~~~~L~~L~l~~~~~l~~~~-~~~---~~~~~~~~~----------------~~~~~~~~~L~~L~l~~~~~  197 (495)
                             ..+++|+.++++++....... +.+   .+..-..-.                .......++++.|+++++. 
T Consensus       180 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~-  258 (520)
T 2z7x_B          180 FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK-  258 (520)
T ss_dssp             CCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE-
T ss_pred             hhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccc-
Confidence                   124555666655542000000 000   000000000                0000001245555555531 


Q ss_pred             CcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhh-hhcCCC---CCCcEEeeeCCCCCCcccccCCCCCCccE
Q 011033          198 LTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIA-ERLDNN---TSLETINISGCENLKILPSGLHNLGQLQE  273 (495)
Q Consensus       198 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~---~~L~~L~l~~~~~~~~l~~~~~~l~~L~~  273 (495)
                      ++     +.+|..+...... -.+.|+.++++++..  .+| .++..+   .+|+.|++++|.. ...+ ....+++|++
T Consensus       259 l~-----~~~p~~~~~~~~~-~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l-~~~~-~~~~l~~L~~  328 (520)
T 2z7x_B          259 LQ-----GQLDFRDFDYSGT-SLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRM-VHML-CPSKISPFLH  328 (520)
T ss_dssp             EE-----SCCCCCCCCCCSC-CCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCC-CCCC-CCSSCCCCCE
T ss_pred             cc-----Cccccchhhcccc-cCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcc-cccc-chhhCCcccE
Confidence            11     1112111000002 237799999998776  444 333333   6799999999653 3332 1267899999


Q ss_pred             EEeeCCCCccccCCCCCCCCCCcEEEecCccccc--cccccccCCCCcceeEecc-cccc-ccCC--CCCCccceeEeec
Q 011033          274 IEIWECENLVSFPEGGLPCAKLSKLRIYGCERLE--ALPKGLHNLTSLQQLTIGG-ELPS-LEED--GLPTNLHSLHIWG  347 (495)
Q Consensus       274 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-~l~~-~~~~--~~~~~L~~L~l~~  347 (495)
                      |++++|..-..++..+..+++|+.|++++|....  .+|..+..+++|++|++++ .+.. ++..  ..+++|++|++++
T Consensus       329 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~  408 (520)
T 2z7x_B          329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS  408 (520)
T ss_dssp             EECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred             EEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence            9999995544577778889999999999997543  4556789999999999999 7776 6653  5578999999999


Q ss_pred             cCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeecccccccccccc-cccCCCCCe
Q 011033          348 NMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSS-IVDLQNLTH  426 (495)
Q Consensus       348 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~  426 (495)
                      |.... ..+.   .+.  ++|+.|++++|  .+..++...       ..+++|+.|++++ +.++.+|.. +..+++|++
T Consensus       409 N~l~~-~~~~---~l~--~~L~~L~Ls~N--~l~~ip~~~-------~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~  472 (520)
T 2z7x_B          409 NILTD-TIFR---CLP--PRIKVLDLHSN--KIKSIPKQV-------VKLEALQELNVAS-NQLKSVPDGIFDRLTSLQK  472 (520)
T ss_dssp             SCCCG-GGGG---SCC--TTCCEEECCSS--CCCCCCGGG-------GGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCc-chhh---hhc--ccCCEEECCCC--cccccchhh-------hcCCCCCEEECCC-CcCCccCHHHhccCCcccE
Confidence            98433 3333   222  79999999999  777887755       2567999999999 688899985 889999999


Q ss_pred             EeccCCC
Q 011033          427 LNLVDCP  433 (495)
Q Consensus       427 L~l~~c~  433 (495)
                      |++++|+
T Consensus       473 L~l~~N~  479 (520)
T 2z7x_B          473 IWLHTNP  479 (520)
T ss_dssp             EECCSSC
T ss_pred             EECcCCC
Confidence            9999976

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=1.3e-25  Score=217.29  Aligned_cols=305  Identities=17%  Similarity=0.178  Sum_probs=238.9

Q ss_pred             ccCCCCccEEEEeCCCCCCCCCCCCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccccCCCCcc
Q 011033           72 SLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLK  151 (495)
Q Consensus        72 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~  151 (495)
                      +..+++|++|++++| .+..++.+..+++|++|++++|. +..++. +...  ++|++|++++| .++.++....+++|+
T Consensus        40 ~~~l~~L~~L~l~~~-~i~~~~~~~~~~~L~~L~l~~n~-i~~~~~-~~~l--~~L~~L~L~~n-~i~~~~~~~~l~~L~  113 (347)
T 4fmz_A           40 QEELESITKLVVAGE-KVASIQGIEYLTNLEYLNLNGNQ-ITDISP-LSNL--VKLTNLYIGTN-KITDISALQNLTNLR  113 (347)
T ss_dssp             HHHHTTCSEEECCSS-CCCCCTTGGGCTTCCEEECCSSC-CCCCGG-GTTC--TTCCEEECCSS-CCCCCGGGTTCTTCS
T ss_pred             chhcccccEEEEeCC-ccccchhhhhcCCccEEEccCCc-cccchh-hhcC--CcCCEEEccCC-cccCchHHcCCCcCC
Confidence            567899999999997 78888888999999999999987 666666 4444  99999999996 677777777888999


Q ss_pred             EEEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecC
Q 011033          152 RLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYC  231 (495)
Q Consensus       152 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  231 (495)
                      .|+++++ .+..+  +. +                            .                   ..++|+.|++++|
T Consensus       114 ~L~l~~n-~i~~~--~~-~----------------------------~-------------------~l~~L~~L~l~~n  142 (347)
T 4fmz_A          114 ELYLNED-NISDI--SP-L----------------------------A-------------------NLTKMYSLNLGAN  142 (347)
T ss_dssp             EEECTTS-CCCCC--GG-G----------------------------T-------------------TCTTCCEEECTTC
T ss_pred             EEECcCC-cccCc--hh-h----------------------------c-------------------cCCceeEEECCCC
Confidence            9999885 34332  11 0                            0                   1156777787777


Q ss_pred             CCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccc
Q 011033          232 PKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPK  311 (495)
Q Consensus       232 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~  311 (495)
                      .....++. +..+++|+.|++++|. +..++. +..+++|++|++++| .+..++. +..+++|+.+++++|. +..++.
T Consensus       143 ~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~  216 (347)
T 4fmz_A          143 HNLSDLSP-LSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYN-QIEDISP-LASLTSLHYFTAYVNQ-ITDITP  216 (347)
T ss_dssp             TTCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTS-CCCCCGG-GGGCTTCCEEECCSSC-CCCCGG
T ss_pred             CCcccccc-hhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCC-ccccccc-ccCCCccceeecccCC-CCCCch
Confidence            66665554 7899999999999964 444543 788999999999998 5666555 6677899999999985 555543


Q ss_pred             cccCCCCcceeEecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccc
Q 011033          312 GLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRL  390 (495)
Q Consensus       312 ~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  390 (495)
                       +..+++|++|++++ .+..++....+++|++|++++|.... .  .   .+..+++|++|++++|  .+..++.-.   
T Consensus       217 -~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~--~---~~~~l~~L~~L~l~~n--~l~~~~~~~---  284 (347)
T 4fmz_A          217 -VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD-I--N---AVKDLTKLKMLNVGSN--QISDISVLN---  284 (347)
T ss_dssp             -GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-C--G---GGTTCTTCCEEECCSS--CCCCCGGGG---
T ss_pred             -hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCC-C--h---hHhcCCCcCEEEccCC--ccCCChhhc---
Confidence             88899999999999 88887777788999999999997332 2  2   4788999999999998  777765432   


Q ss_pred             cccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCCCCCccccceeeccCCch
Q 011033          391 GTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCPL  457 (495)
Q Consensus       391 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~  457 (495)
                           .+++|+.|++++|.-....+..+..+++|++|++++|+ ++.++....+++|++|++++|+.
T Consensus       285 -----~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          285 -----NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQVI  345 (347)
T ss_dssp             -----GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC--
T ss_pred             -----CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccceeehhhhcc
Confidence                 56799999999965444455578899999999999976 77776655689999999999973

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.94  E-value=2e-25  Score=223.00  Aligned_cols=224  Identities=19%  Similarity=0.185  Sum_probs=114.3

Q ss_pred             ccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC
Q 011033           15 LQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE   94 (495)
Q Consensus        15 ~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~   94 (495)
                      ++.+++|++|++++ +.++.++ +     +..+    ++|++|++++| .+..+|  ++.+++|++|++++| .++.++ 
T Consensus        38 ~~~l~~L~~L~Ls~-n~l~~~~-~-----l~~l----~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~-  101 (457)
T 3bz5_A           38 EEQLATLTSLDCHN-SSITDMT-G-----IEKL----TGLTKLICTSN-NITTLD--LSQNTNLTYLACDSN-KLTNLD-  101 (457)
T ss_dssp             HHHHTTCCEEECCS-SCCCCCT-T-----GGGC----TTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSS-CCSCCC-
T ss_pred             hhHcCCCCEEEccC-CCcccCh-h-----hccc----CCCCEEEccCC-cCCeEc--cccCCCCCEEECcCC-CCceee-
Confidence            44566666666666 3455543 2     5555    66666666665 344443  556666666666665 455444 


Q ss_pred             CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccccCCCCccEEEeccCCCccccccccccccCC
Q 011033           95 VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSS  174 (495)
Q Consensus        95 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  174 (495)
                      ++.+++|++|++++|. +..++  +...  ++|++|++++| .++.++ ...+++|+.|+++++..+..+          
T Consensus       102 ~~~l~~L~~L~L~~N~-l~~l~--~~~l--~~L~~L~l~~N-~l~~l~-l~~l~~L~~L~l~~n~~~~~~----------  164 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTNK-LTKLD--VSQN--PLLTYLNCARN-TLTEID-VSHNTQLTELDCHLNKKITKL----------  164 (457)
T ss_dssp             CTTCTTCCEEECCSSC-CSCCC--CTTC--TTCCEEECTTS-CCSCCC-CTTCTTCCEEECTTCSCCCCC----------
T ss_pred             cCCCCcCCEEECCCCc-CCeec--CCCC--CcCCEEECCCC-ccceec-cccCCcCCEEECCCCCccccc----------
Confidence            5566666666666655 33343  2222  55666666653 343332 334455555555554333222          


Q ss_pred             CCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeC
Q 011033          175 SSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISG  254 (495)
Q Consensus       175 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  254 (495)
                                                              +...+ ++|+.|++++|.... +|  +..+++|+.|++++
T Consensus       165 ----------------------------------------~~~~l-~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~  200 (457)
T 3bz5_A          165 ----------------------------------------DVTPQ-TQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDT  200 (457)
T ss_dssp             ----------------------------------------CCTTC-TTCCEEECCSSCCCC-CC--CTTCTTCCEEECCS
T ss_pred             ----------------------------------------ccccC-CcCCEEECCCCccce-ec--cccCCCCCEEECcC
Confidence                                                    11111 445555555443322 22  44555666666655


Q ss_pred             CCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEe
Q 011033          255 CENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTI  324 (495)
Q Consensus       255 ~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  324 (495)
                      |. +..+  .+..+++|+.|++++| .++.+|  +..+++|+.|++++|. ++.+|  ...+++|+.|++
T Consensus       201 N~-l~~~--~l~~l~~L~~L~Ls~N-~l~~ip--~~~l~~L~~L~l~~N~-l~~~~--~~~l~~L~~L~l  261 (457)
T 3bz5_A          201 NN-ITKL--DLNQNIQLTFLDCSSN-KLTEID--VTPLTQLTYFDCSVNP-LTELD--VSTLSKLTTLHC  261 (457)
T ss_dssp             SC-CSCC--CCTTCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEEC
T ss_pred             Cc-CCee--ccccCCCCCEEECcCC-cccccC--ccccCCCCEEEeeCCc-CCCcC--HHHCCCCCEEec
Confidence            32 3333  2455566666666665 344444  4445566666666654 33332  334445555444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.94  E-value=2.5e-25  Score=233.08  Aligned_cols=220  Identities=17%  Similarity=0.102  Sum_probs=157.4

Q ss_pred             CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCC--cccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEE
Q 011033          221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLK--ILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKL  298 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L  298 (495)
                      +.++.+.+..+.....  .....+++|+.++++++....  ..+.....+.+|+.+++..+ .....+..+..+++|+.+
T Consensus       349 ~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~-~~~~~~~~~~~l~~L~~l  425 (635)
T 4g8a_A          349 KSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN-GVITMSSNFLGLEQLEHL  425 (635)
T ss_dssp             TTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSC-SEEEECSCCTTCTTCCEE
T ss_pred             hhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccc-ccccccccccccccccch
Confidence            3455555554433221  123356777888777753321  22334456677888888776 455556667778899999


Q ss_pred             EecCcccccccc-ccccCCCCcceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEee
Q 011033          299 RIYGCERLEALP-KGLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIE  374 (495)
Q Consensus       299 ~l~~~~~~~~~~-~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  374 (495)
                      ++.++......+ ..+..+++++.++++. .+......  ..+++|++|++++|.......+.   .+..+++|+.|+++
T Consensus       426 ~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~---~~~~l~~L~~L~Ls  502 (635)
T 4g8a_A          426 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD---IFTELRNLTFLDLS  502 (635)
T ss_dssp             ECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS---CCTTCTTCCEEECT
T ss_pred             hhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCch---hhhhccccCEEECC
Confidence            998876555443 3577889999999988 55555443  45789999999999866544444   78899999999999


Q ss_pred             ccccccccchhhhccccccCCCCCCCceeeeccccccccccc-ccccCCCCCeEeccCCCCCCCCCCCCC---cccccee
Q 011033          375 GCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-SIVDLQNLTHLNLVDCPKLKYFPEKGL---PSSLLQL  450 (495)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~---~~~L~~L  450 (495)
                      +|  .+..++...      +..+++|++|+|++ ++++.++. .+..+++|++|++++ ++++.++...+   +++|++|
T Consensus       503 ~N--~L~~l~~~~------f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L~~L  572 (635)
T 4g8a_A          503 QC--QLEQLSPTA------FNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFL  572 (635)
T ss_dssp             TS--CCCEECTTT------TTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTT-SCCCBCCSSCTTCCCTTCCEE
T ss_pred             CC--ccCCcChHH------HcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCC-CcCCCCCHHHHHhhhCcCCEE
Confidence            98  777775532      34578999999999 67888765 688999999999999 55888766433   4789999


Q ss_pred             eccCCc
Q 011033          451 SIYRCP  456 (495)
Q Consensus       451 ~l~~c~  456 (495)
                      ++++||
T Consensus       573 ~L~~Np  578 (635)
T 4g8a_A          573 NLTQND  578 (635)
T ss_dssp             ECTTCC
T ss_pred             EeeCCC
Confidence            999876

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.94  E-value=1.4e-25  Score=225.35  Aligned_cols=362  Identities=16%  Similarity=0.174  Sum_probs=198.4

Q ss_pred             ccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccc-cccccCCCCccEEEEeCCCCCCCC-CC-C
Q 011033           19 CSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKL-PQSSLSLSSLREIEIYKCSSLVSF-PE-V   95 (495)
Q Consensus        19 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~l-~~-~   95 (495)
                      ++|++|++++ +.++.+.+.    .|.++    ++|++|++++|.....+ +..+..+++|++|++++| .+..+ |. +
T Consensus        30 ~~l~~L~Ls~-n~i~~~~~~----~~~~l----~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~   99 (455)
T 3v47_A           30 AHVNYVDLSL-NSIAELNET----SFSRL----QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAF   99 (455)
T ss_dssp             TTCCEEECCS-SCCCEECTT----TTSSC----TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTT
T ss_pred             CccCEEEecC-CccCcCChh----HhccC----ccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhc
Confidence            5688888888 467766443    46777    88888888887554455 345778888888888887 45444 33 7


Q ss_pred             CCCCCCcEEEEeCCCCCCccccc--cccCCCCCccEEecccCcccccc-cc--ccCCCCccEEEeccCCCcccccccccc
Q 011033           96 ALPSKLKIIEIEGCDALKSLPEA--WMCDTNSSLETLYIEHCRTLTYL-AG--VQLPRSLKRLDILSCDNIRTLTVEEGI  170 (495)
Q Consensus        96 ~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~~-~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~  170 (495)
                      +.+++|++|++++|...+..+..  +...  ++|++|++++|. ++.+ +.  ...+++|+.|+++++ .+.... +..+
T Consensus       100 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l--~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~l  174 (455)
T 3v47_A          100 NGLANLEVLTLTQCNLDGAVLSGNFFKPL--TSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFN-KVKSIC-EEDL  174 (455)
T ss_dssp             TTCTTCCEEECTTSCCBTHHHHSSTTTTC--TTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTC-CBSCCC-TTTS
T ss_pred             cCcccCCEEeCCCCCCCccccCcccccCc--ccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCC-cccccC-hhhh
Confidence            77888888888887743333333  3333  778888888754 4443 33  246778888888775 333220 1111


Q ss_pred             ccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCC---CCCC
Q 011033          171 QSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDN---NTSL  247 (495)
Q Consensus       171 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~L  247 (495)
                               ......+++.++++++ .+..+- .....  ........-.++|+.|++++|......+..+..   .++|
T Consensus       175 ---------~~l~~~~L~~L~l~~n-~l~~~~-~~~~~--~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L  241 (455)
T 3v47_A          175 ---------LNFQGKHFTLLRLSSI-TLQDMN-EYWLG--WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI  241 (455)
T ss_dssp             ---------GGGTTCEEEEEECTTC-BCTTCS-TTCTT--HHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCE
T ss_pred             ---------hccccccccccccccC-cccccc-hhhcc--ccccccccccceeeeEecCCCcccccchhhhhccccccce
Confidence                     1112235666666663 222220 00000  000000001145777777776666655554432   3666


Q ss_pred             cEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-
Q 011033          248 ETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-  326 (495)
Q Consensus       248 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-  326 (495)
                      +.|++++|....... ....++.+           .........+++|+.|++++|......|..+..+++|++|++++ 
T Consensus       242 ~~L~l~~~~~~~~~~-~~~~~~~~-----------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  309 (455)
T 3v47_A          242 QSLILSNSYNMGSSF-GHTNFKDP-----------DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN  309 (455)
T ss_dssp             EEEECTTCTTTSCCT-TCCSSCCC-----------CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             eeEeecccccccccc-chhhhccC-----------cccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCC
Confidence            667666653322110 00000000           00000011224666666666654444555666666666666666 


Q ss_pred             ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceee
Q 011033          327 ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLR  404 (495)
Q Consensus       327 ~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  404 (495)
                      .+..+++.  ..+++|++|++++|.. ....+.   .+.++++|++|++++|  .+..+....      +..+++|+.|+
T Consensus       310 ~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~---~~~~l~~L~~L~Ls~N--~l~~~~~~~------~~~l~~L~~L~  377 (455)
T 3v47_A          310 EINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSR---MFENLDKLEVLDLSYN--HIRALGDQS------FLGLPNLKELA  377 (455)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCC-CEECGG---GGTTCTTCCEEECCSS--CCCEECTTT------TTTCTTCCEEE
T ss_pred             cccccChhHhcCcccCCEEECCCCcc-CCcChh---HhcCcccCCEEECCCC--cccccChhh------ccccccccEEE
Confidence            55444332  3345666666666652 222222   4667777777777777  555443211      23456777777


Q ss_pred             eccccccccccc-ccccCCCCCeEeccCCC
Q 011033          405 IVDFPNLERLSS-SIVDLQNLTHLNLVDCP  433 (495)
Q Consensus       405 l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~  433 (495)
                      +++ +.++.+|. .+..+++|++|++++|+
T Consensus       378 L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          378 LDT-NQLKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             CCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCC-CccccCCHhHhccCCcccEEEccCCC
Confidence            777 56666665 45677778888887765

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.94  E-value=1.9e-25  Score=224.37  Aligned_cols=367  Identities=15%  Similarity=0.090  Sum_probs=226.0

Q ss_pred             ccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC--CCCC
Q 011033           21 LRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--VALP   98 (495)
Q Consensus        21 L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~   98 (495)
                      -+.++.++ .+++.+|.-            +++|++|++++|......|..++.+++|++|++++|.....++.  +..+
T Consensus        12 ~~~~~c~~-~~l~~lp~l------------~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l   78 (455)
T 3v47_A           12 GYNAICIN-RGLHQVPEL------------PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL   78 (455)
T ss_dssp             TTEEECCS-SCCSSCCCC------------CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTC
T ss_pred             ccccCcCC-CCcccCCCC------------CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccccccc
Confidence            34566666 467766541            27899999999855444477799999999999999854446544  8889


Q ss_pred             CCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccc-ccc---ccCCCCccEEEeccCCCccccccccccccCC
Q 011033           99 SKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTY-LAG---VQLPRSLKRLDILSCDNIRTLTVEEGIQSSS  174 (495)
Q Consensus        99 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  174 (495)
                      ++|++|++++|......|..+...  ++|++|++++|. ++. ++.   ...+++|+.|+++++ .+..+. +..+    
T Consensus        79 ~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~----  149 (455)
T 3v47_A           79 SSLIILKLDYNQFLQLETGAFNGL--ANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQ-PASF----  149 (455)
T ss_dssp             TTCCEEECTTCTTCEECTTTTTTC--TTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSS-BCCSCC-CCGG----
T ss_pred             ccCCEEeCCCCccCccChhhccCc--ccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCC-ccCccC-cccc----
Confidence            999999999988555556677655  899999999964 443 222   356788999998885 343320 1110    


Q ss_pred             CCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCC-CCCccEEEeecCCCchhhhhhcCCCCCCcEEeee
Q 011033          175 SSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNL-PPSLKSLFVWYCPKLESIAERLDNNTSLETINIS  253 (495)
Q Consensus       175 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  253 (495)
                            ...+++|+.|+++++ .++...     +..+     ..+ .+.++.++++++......+.++..          
T Consensus       150 ------~~~l~~L~~L~L~~n-~l~~~~-----~~~l-----~~l~~~~L~~L~l~~n~l~~~~~~~~~~----------  202 (455)
T 3v47_A          150 ------FLNMRRFHVLDLTFN-KVKSIC-----EEDL-----LNFQGKHFTLLRLSSITLQDMNEYWLGW----------  202 (455)
T ss_dssp             ------GGGCTTCCEEECTTC-CBSCCC-----TTTS-----GGGTTCEEEEEECTTCBCTTCSTTCTTH----------
T ss_pred             ------cCCCCcccEEeCCCC-cccccC-----hhhh-----hccccccccccccccCcccccchhhccc----------
Confidence                  012344556665552 222210     0000     000 034455555544332211111000          


Q ss_pred             CCCCCCcccccCCCCCCccEEEeeCCCCccccCCCC---CCCCCCcEEEecCccccccc----------ccccc--CCCC
Q 011033          254 GCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGG---LPCAKLSKLRIYGCERLEAL----------PKGLH--NLTS  318 (495)
Q Consensus       254 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~---~~~~~L~~L~l~~~~~~~~~----------~~~l~--~l~~  318 (495)
                            .....+..+++|++|++++|......+..+   ...++|+.|++++|......          +..+.  ..++
T Consensus       203 ------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (455)
T 3v47_A          203 ------EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG  276 (455)
T ss_dssp             ------HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSC
T ss_pred             ------cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccC
Confidence                  000012233455555555543222222111   11134555555544222110          01111  2478


Q ss_pred             cceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCC
Q 011033          319 LQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALP  395 (495)
Q Consensus       319 L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  395 (495)
                      |++|++++ .+..+.+.  ..+++|++|++++|.. ....+.   .+.++++|++|++++|  .+..++...      +.
T Consensus       277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~---~~~~l~~L~~L~Ls~N--~l~~~~~~~------~~  344 (455)
T 3v47_A          277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-NKIDDN---AFWGLTHLLKLNLSQN--FLGSIDSRM------FE  344 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC-CEECTT---TTTTCTTCCEEECCSS--CCCEECGGG------GT
T ss_pred             ceEEEecCccccccchhhcccCCCCCEEECCCCcc-cccChh---HhcCcccCCEEECCCC--ccCCcChhH------hc
Confidence            99999999 76665443  5678999999999983 333333   6889999999999998  666664422      23


Q ss_pred             CCCCCceeeeccccccccc-ccccccCCCCCeEeccCCCCCCCCCCCC--CccccceeeccCCc
Q 011033          396 LPASLTSLRIVDFPNLERL-SSSIVDLQNLTHLNLVDCPKLKYFPEKG--LPSSLLQLSIYRCP  456 (495)
Q Consensus       396 ~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~c~  456 (495)
                      .+++|++|+++++ .++.+ |..+..+++|++|++++ +.++.++...  .+++|++|++++|+
T Consensus       345 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          345 NLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             TCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CcccCCEEECCCC-cccccChhhccccccccEEECCC-CccccCCHhHhccCCcccEEEccCCC
Confidence            5689999999994 66666 66899999999999999 5688888753  47999999999985

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.94  E-value=7.7e-25  Score=218.64  Aligned_cols=354  Identities=25%  Similarity=0.253  Sum_probs=228.1

Q ss_pred             CccccccccccEEecccccccccccchhhHHHHhhhhh---------cccccceeecccccCCccccccccCCCCccEEE
Q 011033           12 NELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCE---------LSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIE   82 (495)
Q Consensus        12 ~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~---------~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~   82 (495)
                      +..++++++|++|++++|.-...+|.+     ++.+..         ...++++|++++| .+..+|..   .++|++|+
T Consensus        27 P~~i~~L~~L~~L~l~~n~~~~~~p~~-----~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~~---~~~L~~L~   97 (454)
T 1jl5_A           27 PVEAENVKSKTEYYNAWSEWERNAPPG-----NGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPEL---PPHLESLV   97 (454)
T ss_dssp             -------CCHHHHHHHHHHHHHTSCTT-----SCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCSC---CTTCSEEE
T ss_pred             ChhHhcccchhhhhccCCcccccCCcc-----cccchhcchhhhhhhhccCCCEEEecCC-ccccCCCC---cCCCCEEE
Confidence            456788999999999995432355553     555400         0134589999997 46777762   47899999


Q ss_pred             EeCCCCCCCCCCCCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccccCCCCccEEEeccCCCcc
Q 011033           83 IYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIR  162 (495)
Q Consensus        83 l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~  162 (495)
                      +++| .++.+|.  .+.+|++|++++|. +..++..   .  ++|++|++++| .++.+|....+++|+.|+++++ .++
T Consensus        98 l~~n-~l~~lp~--~~~~L~~L~l~~n~-l~~l~~~---~--~~L~~L~L~~n-~l~~lp~~~~l~~L~~L~l~~N-~l~  166 (454)
T 1jl5_A           98 ASCN-SLTELPE--LPQSLKSLLVDNNN-LKALSDL---P--PLLEYLGVSNN-QLEKLPELQNSSFLKIIDVDNN-SLK  166 (454)
T ss_dssp             CCSS-CCSSCCC--CCTTCCEEECCSSC-CSCCCSC---C--TTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSS-CCS
T ss_pred             ccCC-cCCcccc--ccCCCcEEECCCCc-cCcccCC---C--CCCCEEECcCC-CCCCCcccCCCCCCCEEECCCC-cCc
Confidence            9987 6666774  35789999999986 5555542   1  57999999885 5667776678889999999885 555


Q ss_pred             ccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcC
Q 011033          163 TLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLD  242 (495)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  242 (495)
                      .+  +...              .+++.|+++++ .++.+             +...-.++|+.|++++|...+ +|..  
T Consensus       167 ~l--p~~~--------------~~L~~L~L~~n-~l~~l-------------~~~~~l~~L~~L~l~~N~l~~-l~~~--  213 (454)
T 1jl5_A          167 KL--PDLP--------------PSLEFIAAGNN-QLEEL-------------PELQNLPFLTAIYADNNSLKK-LPDL--  213 (454)
T ss_dssp             CC--CCCC--------------TTCCEEECCSS-CCSSC-------------CCCTTCTTCCEEECCSSCCSS-CCCC--
T ss_pred             cc--CCCc--------------ccccEEECcCC-cCCcC-------------ccccCCCCCCEEECCCCcCCc-CCCC--
Confidence            44  4322              25888888874 44443             211223778899988776543 3332  


Q ss_pred             CCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCccee
Q 011033          243 NNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQL  322 (495)
Q Consensus       243 ~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  322 (495)
                       .++|++|++++| .+..+|. +..+++|++|++++| .++.++..   +++|+.|++++|. ++.+|..   +++|++|
T Consensus       214 -~~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~l~~N-~l~~l~~~---~~~L~~L~l~~N~-l~~l~~~---~~~L~~L  282 (454)
T 1jl5_A          214 -PLSLESIVAGNN-ILEELPE-LQNLPFLTTIYADNN-LLKTLPDL---PPSLEALNVRDNY-LTDLPEL---PQSLTFL  282 (454)
T ss_dssp             -CTTCCEEECCSS-CCSSCCC-CTTCTTCCEEECCSS-CCSSCCSC---CTTCCEEECCSSC-CSCCCCC---CTTCCEE
T ss_pred             -cCcccEEECcCC-cCCcccc-cCCCCCCCEEECCCC-cCCccccc---ccccCEEECCCCc-ccccCcc---cCcCCEE
Confidence             258889999886 4556764 778889999999887 55666543   3688899998875 5556653   3788888


Q ss_pred             Eecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCC-CccceEEeeccccccccchhhhccccccCCCCCCC
Q 011033          323 TIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRF-SSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASL  400 (495)
Q Consensus       323 ~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L  400 (495)
                      ++++ .+..++.  .+++|++|++++|....         +..+ ++|++|++++|  .+..++.          .+++|
T Consensus       283 ~ls~N~l~~l~~--~~~~L~~L~l~~N~l~~---------i~~~~~~L~~L~Ls~N--~l~~lp~----------~~~~L  339 (454)
T 1jl5_A          283 DVSENIFSGLSE--LPPNLYYLNASSNEIRS---------LCDLPPSLEELNVSNN--KLIELPA----------LPPRL  339 (454)
T ss_dssp             ECCSSCCSEESC--CCTTCCEEECCSSCCSE---------ECCCCTTCCEEECCSS--CCSCCCC----------CCTTC
T ss_pred             ECcCCccCcccC--cCCcCCEEECcCCcCCc---------ccCCcCcCCEEECCCC--ccccccc----------cCCcC
Confidence            8888 6666543  35788888888886321         2233 47888888887  6666554          34688


Q ss_pred             ceeeecccccccccccccccCCCCCeEeccCCCCCCC---CCCC-CCc-------------cccceeeccCCch
Q 011033          401 TSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKY---FPEK-GLP-------------SSLLQLSIYRCPL  457 (495)
Q Consensus       401 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~---l~~~-~~~-------------~~L~~L~l~~c~~  457 (495)
                      +.|++++ +.++.+|.   .+++|++|++++|+ +..   +|.. ..+             ++|++|++++|+.
T Consensus       340 ~~L~L~~-N~l~~lp~---~l~~L~~L~L~~N~-l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l  408 (454)
T 1jl5_A          340 ERLIASF-NHLAEVPE---LPQNLKQLHVEYNP-LREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL  408 (454)
T ss_dssp             CEEECCS-SCCSCCCC---CCTTCCEEECCSSC-CSSCCCCCTTCCEEECCC----------------------
T ss_pred             CEEECCC-Cccccccc---hhhhccEEECCCCC-CCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcC
Confidence            8888888 56777875   47888888888854 555   3332 112             6788888888764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.93  E-value=4.4e-24  Score=213.30  Aligned_cols=306  Identities=15%  Similarity=0.177  Sum_probs=217.6

Q ss_pred             HhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCCCCCcEEEEeCCCCCCccccccccCC
Q 011033           44 QQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDT  123 (495)
Q Consensus        44 ~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  123 (495)
                      ++.+    ++|++|++++| .+..+| .++.+++|++|++++| .++.++ ++.+++|++|++++|. +..++  +... 
T Consensus        38 ~~~l----~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~-~~~l~~L~~L~Ls~N~-l~~~~--~~~l-  105 (457)
T 3bz5_A           38 EEQL----ATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSN-NITTLD-LSQNTNLTYLACDSNK-LTNLD--VTPL-  105 (457)
T ss_dssp             HHHH----TTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSSC-CSCCC--CTTC-
T ss_pred             hhHc----CCCCEEEccCC-CcccCh-hhcccCCCCEEEccCC-cCCeEc-cccCCCCCEEECcCCC-Cceee--cCCC-
Confidence            7777    99999999997 556677 5889999999999998 677776 8889999999999987 55554  4434 


Q ss_pred             CCCccEEecccCccccccccccCCCCccEEEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCccccc
Q 011033          124 NSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFS  203 (495)
Q Consensus       124 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  203 (495)
                       ++|++|++++| .++.++ ...+++|+.|+++++ .++.+                          .+           
T Consensus       106 -~~L~~L~L~~N-~l~~l~-~~~l~~L~~L~l~~N-~l~~l--------------------------~l-----------  144 (457)
T 3bz5_A          106 -TKLTYLNCDTN-KLTKLD-VSQNPLLTYLNCARN-TLTEI--------------------------DV-----------  144 (457)
T ss_dssp             -TTCCEEECCSS-CCSCCC-CTTCTTCCEEECTTS-CCSCC--------------------------CC-----------
T ss_pred             -CcCCEEECCCC-cCCeec-CCCCCcCCEEECCCC-cccee--------------------------cc-----------
Confidence             88999999885 455554 456677777777764 23222                          01           


Q ss_pred             CCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCcc
Q 011033          204 QNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLV  283 (495)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~  283 (495)
                                   ..+ ++|+.|++++|.....+  .+..+++|+.|++++| .+..++  +..+++|+.|++++| .++
T Consensus       145 -------------~~l-~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~l~--l~~l~~L~~L~l~~N-~l~  204 (457)
T 3bz5_A          145 -------------SHN-TQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KITELD--VSQNKLLNRLNCDTN-NIT  204 (457)
T ss_dssp             -------------TTC-TTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCCCCC--CTTCTTCCEEECCSS-CCS
T ss_pred             -------------ccC-CcCCEEECCCCCccccc--ccccCCcCCEEECCCC-ccceec--cccCCCCCEEECcCC-cCC
Confidence                         111 67888888888666655  3778999999999995 466665  788999999999998 566


Q ss_pred             ccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCCCCCCccc----------eeEeeccCccc
Q 011033          284 SFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEEDGLPTNLH----------SLHIWGNMEIW  352 (495)
Q Consensus       284 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~----------~L~l~~~~~~~  352 (495)
                      .++  +..+++|+.|++++|. ++.+|  +..+++|+.|++++ .+..++. +.+++|+          .|++++|....
T Consensus       205 ~~~--l~~l~~L~~L~Ls~N~-l~~ip--~~~l~~L~~L~l~~N~l~~~~~-~~l~~L~~L~l~~n~L~~L~l~~n~~~~  278 (457)
T 3bz5_A          205 KLD--LNQNIQLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVNPLTELDV-STLSKLTTLHCIQTDLLEIDLTHNTQLI  278 (457)
T ss_dssp             CCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSCCSCCCC-TTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred             eec--cccCCCCCEEECcCCc-ccccC--ccccCCCCEEEeeCCcCCCcCH-HHCCCCCEEeccCCCCCEEECCCCccCC
Confidence            553  6678899999999986 55576  88999999999999 7777653 3445555          45555554222


Q ss_pred             hhhhcccccCCCCCccceEEeeccccccccchhhhccccc-cCCCCCCCceeeecccccccccccccccCCCCCeEeccC
Q 011033          353 KSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGT-ALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVD  431 (495)
Q Consensus       353 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  431 (495)
                      .      .....+++|+.|++++| ..+..++.....+.. .+...++|+.|++++ ++++.++  +.++++|++|++++
T Consensus       279 ~------~~~~~l~~L~~L~Ls~n-~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~-N~l~~l~--l~~l~~L~~L~l~~  348 (457)
T 3bz5_A          279 Y------FQAEGCRKIKELDVTHN-TQLYLLDCQAAGITELDLSQNPKLVYLYLNN-TELTELD--VSHNTKLKSLSCVN  348 (457)
T ss_dssp             E------EECTTCTTCCCCCCTTC-TTCCEEECTTCCCSCCCCTTCTTCCEEECTT-CCCSCCC--CTTCTTCSEEECCS
T ss_pred             c------ccccccccCCEEECCCC-cccceeccCCCcceEechhhcccCCEEECCC-Ccccccc--cccCCcCcEEECCC
Confidence            1      12467788999999998 345555543221111 123345777777777 5666664  77888889998888


Q ss_pred             CCCCCCCC
Q 011033          432 CPKLKYFP  439 (495)
Q Consensus       432 c~~l~~l~  439 (495)
                       +.++.++
T Consensus       349 -N~l~~l~  355 (457)
T 3bz5_A          349 -AHIQDFS  355 (457)
T ss_dssp             -SCCCBCT
T ss_pred             -CCCCCcc
Confidence             4566654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.93  E-value=1.9e-24  Score=212.41  Aligned_cols=299  Identities=17%  Similarity=0.148  Sum_probs=217.9

Q ss_pred             ccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCcccc-ccccCCCCccEEEEeCCCCCCCCCC-
Q 011033           17 DICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLP-QSSLSLSSLREIEIYKCSSLVSFPE-   94 (495)
Q Consensus        17 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-   94 (495)
                      .+++++.|++++ +.++.++.+    .+..+    ++|++|++++|. +..++ ..+..+++|++|++++| .++.+++ 
T Consensus        43 ~l~~l~~l~l~~-~~l~~l~~~----~~~~l----~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~  111 (390)
T 3o6n_A           43 TLNNQKIVTFKN-STMRKLPAA----LLDSF----RQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPH  111 (390)
T ss_dssp             GGCCCSEEEEES-CEESEECTH----HHHHC----CCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred             ccCCceEEEecC-CchhhCChh----Hhccc----ccCcEEECCCCc-ccccChhhccCCCCcCEEECCCC-CCCcCCHH
Confidence            468999999999 578888885    67888    999999999984 45554 47899999999999998 5766654 


Q ss_pred             -CCCCCCCcEEEEeCCCCCCcccccc-ccCCCCCccEEecccCccccccccc--cCCCCccEEEeccCCCcccccccccc
Q 011033           95 -VALPSKLKIIEIEGCDALKSLPEAW-MCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTVEEGI  170 (495)
Q Consensus        95 -~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~  170 (495)
                       ++.+++|++|++++|. +..+|..+ ...  ++|++|++++| .++.++..  ..+++|+.|+++++ .++.+  +.. 
T Consensus       112 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l--~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~-  183 (390)
T 3o6n_A          112 VFQNVPLLTVLVLERND-LSSLPRGIFHNT--PKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSN-RLTHV--DLS-  183 (390)
T ss_dssp             TTTTCTTCCEEECCSSC-CCCCCTTTTTTC--TTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSS-CCSBC--CGG-
T ss_pred             HhcCCCCCCEEECCCCc-cCcCCHHHhcCC--CCCcEEECCCC-ccCccChhhccCCCCCCEEECCCC-cCCcc--ccc-
Confidence             7889999999999987 66777764 344  89999999986 45555442  66889999999985 55544  211 


Q ss_pred             ccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEE
Q 011033          171 QSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETI  250 (495)
Q Consensus       171 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  250 (495)
                                  ..++++.++++++ .++.+                ..+++|+.|++++|..... +.  ...++|+.|
T Consensus       184 ------------~l~~L~~L~l~~n-~l~~~----------------~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L  231 (390)
T 3o6n_A          184 ------------LIPSLFHANVSYN-LLSTL----------------AIPIAVEELDASHNSINVV-RG--PVNVELTIL  231 (390)
T ss_dssp             ------------GCTTCSEEECCSS-CCSEE----------------ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEE
T ss_pred             ------------cccccceeecccc-ccccc----------------CCCCcceEEECCCCeeeec-cc--cccccccEE
Confidence                        1346888888773 44333                2235788888887665433 32  235788888


Q ss_pred             eeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccc
Q 011033          251 NISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELP  329 (495)
Q Consensus       251 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~  329 (495)
                      ++++|. +... ..+..+++|++|++++|..-...+..+..+++|+.|++++|. ++.+|..+..+++|++|++++ .+.
T Consensus       232 ~l~~n~-l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~l~  308 (390)
T 3o6n_A          232 KLQHNN-LTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL  308 (390)
T ss_dssp             ECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSCCC
T ss_pred             ECCCCC-Cccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCcce
Confidence            888854 4333 457778888888888884333345566777888888888875 566666667788888888888 776


Q ss_pred             cccCC-CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeecc
Q 011033          330 SLEED-GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGC  376 (495)
Q Consensus       330 ~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  376 (495)
                      .++.. ..+++|++|++++|....       ..+..+++|+.|++++|
T Consensus       309 ~~~~~~~~l~~L~~L~L~~N~i~~-------~~~~~~~~L~~L~l~~N  349 (390)
T 3o6n_A          309 HVERNQPQFDRLENLYLDHNSIVT-------LKLSTHHTLKNLTLSHN  349 (390)
T ss_dssp             CCGGGHHHHTTCSEEECCSSCCCC-------CCCCTTCCCSEEECCSS
T ss_pred             ecCccccccCcCCEEECCCCccce-------eCchhhccCCEEEcCCC
Confidence            66553 456788888888887332       13567788888888887

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.93  E-value=9.8e-24  Score=213.14  Aligned_cols=309  Identities=18%  Similarity=0.199  Sum_probs=217.2

Q ss_pred             ccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccc-cccccCCCCccEEEEeCCCCCCCCCC--CCC
Q 011033           21 LRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKL-PQSSLSLSSLREIEIYKCSSLVSFPE--VAL   97 (495)
Q Consensus        21 L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~   97 (495)
                      -+.++.++ ..++.+|.+     +      +++++.|++++|. +..+ +..+..+++|++|++++| .++.+++  +..
T Consensus        13 ~~~v~c~~-~~l~~ip~~-----~------~~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~   78 (477)
T 2id5_A           13 DRAVLCHR-KRFVAVPEG-----I------PTETRLLDLGKNR-IKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNN   78 (477)
T ss_dssp             TTEEECCS-CCCSSCCSC-----C------CTTCSEEECCSSC-CCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTT
T ss_pred             CCEEEeCC-CCcCcCCCC-----C------CCCCcEEECCCCc-cceECHhHccCCCCCCEEECCCC-ccCEeChhhhhC
Confidence            35677777 577777764     2      2678999999874 4544 566888899999999887 5665533  788


Q ss_pred             CCCCcEEEEeCCCCCCccccc-cccCCCCCccEEecccCccccccccc--cCCCCccEEEeccCCCccccccccccccCC
Q 011033           98 PSKLKIIEIEGCDALKSLPEA-WMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTVEEGIQSSS  174 (495)
Q Consensus        98 ~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  174 (495)
                      +++|++|++++|. +..+|.. +...  ++|++|++++|. ++.++..  ..+++|+.|+++++ .+..+  ...     
T Consensus        79 l~~L~~L~L~~n~-l~~~~~~~~~~l--~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~-----  146 (477)
T 2id5_A           79 LFNLRTLGLRSNR-LKLIPLGVFTGL--SNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDN-DLVYI--SHR-----  146 (477)
T ss_dssp             CTTCCEEECCSSC-CCSCCTTSSTTC--TTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCT-TCCEE--CTT-----
T ss_pred             CccCCEEECCCCc-CCccCcccccCC--CCCCEEECCCCc-cccCChhHccccccCCEEECCCC-cccee--Chh-----
Confidence            8899999998877 5566654 3333  788888888854 4443222  55677777777764 33322  100     


Q ss_pred             CCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeC
Q 011033          175 SSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISG  254 (495)
Q Consensus       175 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  254 (495)
                                            .+.                  . .++|+.|++++|......+..+..+++|+.|++++
T Consensus       147 ----------------------~~~------------------~-l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  185 (477)
T 2id5_A          147 ----------------------AFS------------------G-LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH  185 (477)
T ss_dssp             ----------------------SST------------------T-CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEES
T ss_pred             ----------------------hcc------------------C-CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCC
Confidence                                  000                  1 16788888887766655556788889999999998


Q ss_pred             CCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCcccccccc-ccccCCCCcceeEecc-cccccc
Q 011033          255 CENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALP-KGLHNLTSLQQLTIGG-ELPSLE  332 (495)
Q Consensus       255 ~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~-~l~~~~  332 (495)
                      |......+..+..+++|+.|++++|.....++.......+|+.|++++|. ++.+| ..+..+++|+.|++++ .+..++
T Consensus       186 n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  264 (477)
T 2id5_A          186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIE  264 (477)
T ss_dssp             CCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEEC
T ss_pred             CcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCCccC
Confidence            65443334568888999999999988888888766666689999999985 55665 3678889999999988 776665


Q ss_pred             CC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeecccc
Q 011033          333 ED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFP  409 (495)
Q Consensus       333 ~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  409 (495)
                      ..  ..+++|++|++++|.. ....+.   .+.++++|+.|++++|  .+..++...      +..+++|+.|++++++
T Consensus       265 ~~~~~~l~~L~~L~L~~n~l-~~~~~~---~~~~l~~L~~L~L~~N--~l~~~~~~~------~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          265 GSMLHELLRLQEIQLVGGQL-AVVEPY---AFRGLNYLRVLNVSGN--QLTTLEESV------FHSVGNLETLILDSNP  331 (477)
T ss_dssp             TTSCTTCTTCCEEECCSSCC-SEECTT---TBTTCTTCCEEECCSS--CCSCCCGGG------BSCGGGCCEEECCSSC
T ss_pred             hhhccccccCCEEECCCCcc-ceECHH---HhcCcccCCEEECCCC--cCceeCHhH------cCCCcccCEEEccCCC
Confidence            53  4567888899888873 333333   5788889999999988  677666543      2345688888888843

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.93  E-value=7.1e-24  Score=208.39  Aligned_cols=300  Identities=16%  Similarity=0.187  Sum_probs=216.2

Q ss_pred             cccceeecccccCCcccccc-ccCCCCccEEEEeCCCCCCCCCC--CCCCCCCcEEEEeCCCCCCccc-cccccCCCCCc
Q 011033           52 CRLEYLRLSYCEGLVKLPQS-SLSLSSLREIEIYKCSSLVSFPE--VALPSKLKIIEIEGCDALKSLP-EAWMCDTNSSL  127 (495)
Q Consensus        52 ~~L~~L~ls~~~~l~~l~~~-~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L  127 (495)
                      ++++.|+++++ .+..+|.. +..+++|++|++++| .++.++.  +..+++|++|++++|. +..++ ..+...  ++|
T Consensus        45 ~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l--~~L  119 (390)
T 3o6n_A           45 NNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNV--PLL  119 (390)
T ss_dssp             CCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC--TTC
T ss_pred             CCceEEEecCC-chhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCC--CCC
Confidence            88999999987 56777765 678899999999997 5666654  7889999999999988 44444 445444  889


Q ss_pred             cEEecccCccccccccc--cCCCCccEEEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCC
Q 011033          128 ETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQN  205 (495)
Q Consensus       128 ~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  205 (495)
                      ++|++++| .++.++..  ..+++|+.|+++++ .++.+  +...          ....++|+.|++++ +.++.+    
T Consensus       120 ~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~--~~~~----------~~~l~~L~~L~l~~-n~l~~~----  180 (390)
T 3o6n_A          120 TVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN-NLERI--EDDT----------FQATTSLQNLQLSS-NRLTHV----  180 (390)
T ss_dssp             CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBC--CTTT----------TSSCTTCCEEECCS-SCCSBC----
T ss_pred             CEEECCCC-ccCcCCHHHhcCCCCCcEEECCCC-ccCcc--Chhh----------ccCCCCCCEEECCC-CcCCcc----
Confidence            99999985 56677664  56889999999985 45443  2211          12245788898888 345443    


Q ss_pred             CCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCcccc
Q 011033          206 ELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSF  285 (495)
Q Consensus       206 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l  285 (495)
                               +...+ ++|+.+++++|....     +...++|+.|++++| .+..++..  ..++|+.|++++| .++..
T Consensus       181 ---------~~~~l-~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n-~l~~~~~~--~~~~L~~L~l~~n-~l~~~  241 (390)
T 3o6n_A          181 ---------DLSLI-PSLFHANVSYNLLST-----LAIPIAVEELDASHN-SINVVRGP--VNVELTILKLQHN-NLTDT  241 (390)
T ss_dssp             ---------CGGGC-TTCSEEECCSSCCSE-----EECCSSCSEEECCSS-CCCEEECC--CCSSCCEEECCSS-CCCCC
T ss_pred             ---------ccccc-cccceeecccccccc-----cCCCCcceEEECCCC-eeeecccc--ccccccEEECCCC-CCccc
Confidence                     22333 789999998775432     234568999999885 45555443  3478999999988 45544


Q ss_pred             CCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCC-CCCCccceeEeeccCccchhhhcccccCC
Q 011033          286 PEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED-GLPTNLHSLHIWGNMEIWKSMIERGRGFH  363 (495)
Q Consensus       286 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  363 (495)
                       ..+..+++|+.|++++|......|..+..+++|++|++++ .+..++.. ..+++|++|++++|.. .. ++.   .+.
T Consensus       242 -~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l-~~-~~~---~~~  315 (390)
T 3o6n_A          242 -AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL-LH-VER---NQP  315 (390)
T ss_dssp             -GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCC-CC-CGG---GHH
T ss_pred             -HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcc-ee-cCc---ccc
Confidence             3456778999999999875555577888899999999998 77777654 4578999999999963 32 222   356


Q ss_pred             CCCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccc
Q 011033          364 RFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLE  412 (495)
Q Consensus       364 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  412 (495)
                      .+++|+.|++++|  .+..++.         ..+++|+.|+++++ .+.
T Consensus       316 ~l~~L~~L~L~~N--~i~~~~~---------~~~~~L~~L~l~~N-~~~  352 (390)
T 3o6n_A          316 QFDRLENLYLDHN--SIVTLKL---------STHHTLKNLTLSHN-DWD  352 (390)
T ss_dssp             HHTTCSEEECCSS--CCCCCCC---------CTTCCCSEEECCSS-CEE
T ss_pred             ccCcCCEEECCCC--ccceeCc---------hhhccCCEEEcCCC-Ccc
Confidence            7889999999998  6766653         24678999999984 443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=4.3e-24  Score=221.39  Aligned_cols=300  Identities=17%  Similarity=0.135  Sum_probs=191.3

Q ss_pred             ccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC--
Q 011033           17 DICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--   94 (495)
Q Consensus        17 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~--   94 (495)
                      .+.+++.+++++ +.++.+|++    .+..+    ++|++|++++|......|..++.+++|++|++++| .++.+++  
T Consensus        49 ~l~~l~~l~l~~-~~l~~lp~~----~~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~  118 (597)
T 3oja_B           49 TLNNQKIVTFKN-STMRKLPAA----LLDSF----RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHV  118 (597)
T ss_dssp             GGCCCSEEEESS-CEESEECTH----HHHHC----CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred             cCCCceEEEeeC-CCCCCcCHH----HHccC----CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHH
Confidence            467889999999 578888875    67777    99999999998543334457889999999999998 5666664  


Q ss_pred             CCCCCCCcEEEEeCCCCCCcccccc-ccCCCCCccEEecccCcccccccc--ccCCCCccEEEeccCCCccccccccccc
Q 011033           95 VALPSKLKIIEIEGCDALKSLPEAW-MCDTNSSLETLYIEHCRTLTYLAG--VQLPRSLKRLDILSCDNIRTLTVEEGIQ  171 (495)
Q Consensus        95 ~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~  171 (495)
                      ++.+++|++|++++|. +..+|..+ ...  ++|++|++++| .++.++.  ...+++|+.|+++++ .++.+  +... 
T Consensus       119 ~~~l~~L~~L~L~~n~-l~~l~~~~~~~l--~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~--~~~~-  190 (597)
T 3oja_B          119 FQNVPLLTVLVLERND-LSSLPRGIFHNT--PKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSN-RLTHV--DLSL-  190 (597)
T ss_dssp             TTTCTTCCEEECCSSC-CCCCCTTTTTTC--TTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTS-CCSBC--CGGG-
T ss_pred             HcCCCCCCEEEeeCCC-CCCCCHHHhccC--CCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCC-CCCCc--Chhh-
Confidence            6889999999999987 56677654 344  88999999986 4555443  266789999999885 45444  2111 


Q ss_pred             cCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEe
Q 011033          172 SSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETIN  251 (495)
Q Consensus       172 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  251 (495)
                                  .++++.++++++ .++.+                ..+++|+.|++++|..... +..  ..++|+.|+
T Consensus       191 ------------l~~L~~L~l~~n-~l~~l----------------~~~~~L~~L~ls~n~l~~~-~~~--~~~~L~~L~  238 (597)
T 3oja_B          191 ------------IPSLFHANVSYN-LLSTL----------------AIPIAVEELDASHNSINVV-RGP--VNVELTILK  238 (597)
T ss_dssp             ------------CTTCSEEECCSS-CCSEE----------------ECCTTCSEEECCSSCCCEE-ECS--CCSCCCEEE
T ss_pred             ------------hhhhhhhhcccC-ccccc----------------cCCchhheeeccCCccccc-ccc--cCCCCCEEE
Confidence                        345777777663 33322                1224566666665543322 221  124666666


Q ss_pred             eeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-cccc
Q 011033          252 ISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPS  330 (495)
Q Consensus       252 l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~  330 (495)
                      +++|. +.. +..+..+++|+.|++++|..-...+..+..+++|+.|++++|. ++.+|..+..+++|+.|++++ .+..
T Consensus       239 L~~n~-l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~l~~  315 (597)
T 3oja_B          239 LQHNN-LTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLLH  315 (597)
T ss_dssp             CCSSC-CCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSCCCC
T ss_pred             CCCCC-CCC-ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCCCCc
Confidence            66643 222 2445666666666666663333334455566666666666654 444555555666666666666 5555


Q ss_pred             ccCC-CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeecc
Q 011033          331 LEED-GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGC  376 (495)
Q Consensus       331 ~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  376 (495)
                      +|.. ..+++|+.|++++|....       ..+..+++|+.|++++|
T Consensus       316 i~~~~~~l~~L~~L~L~~N~l~~-------~~~~~~~~L~~L~l~~N  355 (597)
T 3oja_B          316 VERNQPQFDRLENLYLDHNSIVT-------LKLSTHHTLKNLTLSHN  355 (597)
T ss_dssp             CGGGHHHHTTCSEEECCSSCCCC-------CCCCTTCCCSEEECCSS
T ss_pred             cCcccccCCCCCEEECCCCCCCC-------cChhhcCCCCEEEeeCC
Confidence            5433 345666677776665322       12455666777777666

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.92  E-value=1.8e-23  Score=215.48  Aligned_cols=406  Identities=14%  Similarity=0.051  Sum_probs=255.6

Q ss_pred             ccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCcccc-ccccCCCCccEEEEeCCCCCCCCCC-
Q 011033           17 DICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLP-QSSLSLSSLREIEIYKCSSLVSFPE-   94 (495)
Q Consensus        17 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-   94 (495)
                      .+...+++++++ ++++.||.+     +      +++|++|++++|. +..++ ..+..+++|++|++++| .++.+++ 
T Consensus        29 ~~~~~~~l~ls~-~~L~~ip~~-----~------~~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~   94 (562)
T 3a79_B           29 SNELESMVDYSN-RNLTHVPKD-----L------PPRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHN-RIRSLDFH   94 (562)
T ss_dssp             ----CCEEECTT-SCCCSCCTT-----S------CTTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSC-CCCEECTT
T ss_pred             ccCCCcEEEcCC-CCCccCCCC-----C------CCCcCEEECCCCC-ccccChhhhccCCCccEEECCCC-CCCcCCHH
Confidence            455678999999 589988875     2      2889999999985 45554 67999999999999998 6776643 


Q ss_pred             -CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccc---cccCCCCccEEEeccCCCcccccccccc
Q 011033           95 -VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLA---GVQLPRSLKRLDILSCDNIRTLTVEEGI  170 (495)
Q Consensus        95 -~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~  170 (495)
                       ++.+++|++|++++|. +..+|..    .+++|++|++++| .++.++   ....+++|+.|+++++ .++...+.   
T Consensus        95 ~~~~l~~L~~L~Ls~N~-l~~lp~~----~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~~~---  164 (562)
T 3a79_B           95 VFLFNQDLEYLDVSHNR-LQNISCC----PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLDLL---  164 (562)
T ss_dssp             TTTTCTTCCEEECTTSC-CCEECSC----CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECS-BCCTTTTG---
T ss_pred             HhCCCCCCCEEECCCCc-CCccCcc----ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCC-ccccCchh---
Confidence             8899999999999988 6678876    3489999999996 466544   2377899999999984 44432111   


Q ss_pred             ccCCCCccCcccCcccc--ceeeecCCCCC-cccccCCCCcccccccc--------------------cCCCCCCccEEE
Q 011033          171 QSSSSSSSNRRYTSSLL--EKLEIRDCPSL-TCIFSQNELPATLESLE--------------------VGNLPPSLKSLF  227 (495)
Q Consensus       171 ~~~~~~~~~~~~~~~~L--~~L~l~~~~~l-~~~~~~~~~~~~~~~~~--------------------~~~~~~~L~~L~  227 (495)
                                  ..+++  +.|+++++.-. +..     .+..+....                    ...-.++|+.++
T Consensus       165 ------------~l~~L~L~~L~L~~n~l~~~~~-----~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~  227 (562)
T 3a79_B          165 ------------PVAHLHLSCILLDLVSYHIKGG-----ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN  227 (562)
T ss_dssp             ------------GGTTSCEEEEEEEESSCCCCSS-----SCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEE
T ss_pred             ------------hhhhceeeEEEeeccccccccc-----CcccccccCcceEEEEecCccchhhhhhhcccccceEEEec
Confidence                        12234  88998885320 111     111111100                    000114567777


Q ss_pred             eecCCC----chhhhhhcCCCC---------------------------CCcEEeeeCCCCCCcccccC-----CCCCCc
Q 011033          228 VWYCPK----LESIAERLDNNT---------------------------SLETINISGCENLKILPSGL-----HNLGQL  271 (495)
Q Consensus       228 l~~~~~----~~~~~~~~~~~~---------------------------~L~~L~l~~~~~~~~l~~~~-----~~l~~L  271 (495)
                      +++|..    .......+..++                           +|++|++++|...+.+|..+     ..++.|
T Consensus       228 l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L  307 (562)
T 3a79_B          228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSL  307 (562)
T ss_dssp             EECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEE
T ss_pred             ccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchhe
Confidence            766531    111111223333                           55555555544333444443     344444


Q ss_pred             cEEEeeCCCCccccCC-CC---CCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccc-cC-CCCCCccceeE
Q 011033          272 QEIEIWECENLVSFPE-GG---LPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSL-EE-DGLPTNLHSLH  344 (495)
Q Consensus       272 ~~L~l~~~~~l~~l~~-~~---~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~-~~-~~~~~~L~~L~  344 (495)
                      +.+++..+. + .+|. ..   ...++|+.|++++|.. ..++ ....+++|++|++++ .+... +. ...+++|++|+
T Consensus       308 ~~~~~~~~~-~-~~p~~~~~~~~~~~~L~~L~l~~n~~-~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  383 (562)
T 3a79_B          308 MIEHVKNQV-F-LFSKEALYSVFAEMNIKMLSISDTPF-IHMV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLI  383 (562)
T ss_dssp             EEEEEEECC-C-SSCHHHHHHHHHTCCCSEEEEESSCC-CCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEE
T ss_pred             ehhhcccce-e-ecChhhhhhhhccCcceEEEccCCCc-cccc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEE
Confidence            444444432 1 2221 00   0113688888888753 3221 226789999999999 66653 22 25678999999


Q ss_pred             eeccCccch-hhhcccccCCCCCccceEEeecccccccc-chhhhccccccCCCCCCCceeeecccccccccccccccCC
Q 011033          345 IWGNMEIWK-SMIERGRGFHRFSSLRHLTIEGCDDDMVS-FPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQ  422 (495)
Q Consensus       345 l~~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~  422 (495)
                      +++|....- ..+.   .+.++++|++|++++|  .+.. ++...      +..+++|+.|+++++.--..+|..+.  +
T Consensus       384 L~~N~l~~~~~~~~---~~~~l~~L~~L~l~~N--~l~~~~~~~~------~~~l~~L~~L~l~~n~l~~~~~~~l~--~  450 (562)
T 3a79_B          384 LQRNGLKNFFKVAL---MTKNMSSLETLDVSLN--SLNSHAYDRT------CAWAESILVLNLSSNMLTGSVFRCLP--P  450 (562)
T ss_dssp             CCSSCCCBTTHHHH---TTTTCTTCCEEECTTS--CCBSCCSSCC------CCCCTTCCEEECCSSCCCGGGGSSCC--T
T ss_pred             CCCCCcCCcccchh---hhcCCCCCCEEECCCC--cCCCccChhh------hcCcccCCEEECCCCCCCcchhhhhc--C
Confidence            999973321 1222   5788999999999998  5655 55432      24567999999999543344554333  7


Q ss_pred             CCCeEeccCCCCCCCCCCC-CCccccceeeccCCchhHHhhhcCCCeeeecceEEeccCcc
Q 011033          423 NLTHLNLVDCPKLKYFPEK-GLPSSLLQLSIYRCPLMEEKCRKDGGLLTHIPSVQIDLNGF  482 (495)
Q Consensus       423 ~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~i~~~~~~~i~~~~~  482 (495)
                      +|++|++++| .++.+|.. ..+++|++|++++|..- .+-...-+.+.++..+++.+|.+
T Consensus       451 ~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          451 KVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             TCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCB
T ss_pred             cCCEEECCCC-cCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCc
Confidence            9999999995 68899874 34789999999999633 22221011355666677777655

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.92  E-value=7.6e-24  Score=213.94  Aligned_cols=293  Identities=20%  Similarity=0.207  Sum_probs=201.2

Q ss_pred             cccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC--C
Q 011033           18 ICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--V   95 (495)
Q Consensus        18 ~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~--~   95 (495)
                      .+++++|++++ +.++.++++    .|.++    ++|++|++++|......|..+..+++|++|++++| .++.+|.  +
T Consensus        31 ~~~l~~L~L~~-n~l~~~~~~----~~~~l----~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~  100 (477)
T 2id5_A           31 PTETRLLDLGK-NRIKTLNQD----EFASF----PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVF  100 (477)
T ss_dssp             CTTCSEEECCS-SCCCEECTT----TTTTC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSS
T ss_pred             CCCCcEEECCC-CccceECHh----HccCC----CCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccc
Confidence            35799999999 678888764    58888    99999999998544445778999999999999998 6888875  7


Q ss_pred             CCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc--cCCCCccEEEeccCCCccccccccccccC
Q 011033           96 ALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTVEEGIQSS  173 (495)
Q Consensus        96 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  173 (495)
                      ..+++|++|++++|......+..+...  ++|++|+++++ .++.++..  ..+++|+.|+++++ .++.+  +...   
T Consensus       101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~~---  171 (477)
T 2id5_A          101 TGLSNLTKLDISENKIVILLDYMFQDL--YNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKC-NLTSI--PTEA---  171 (477)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTC--TTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESC-CCSSC--CHHH---
T ss_pred             cCCCCCCEEECCCCccccCChhHcccc--ccCCEEECCCC-ccceeChhhccCCCCCCEEECCCC-cCccc--ChhH---
Confidence            889999999999998555555565545  89999999985 45554432  66789999999986 45444  2211   


Q ss_pred             CCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeee
Q 011033          174 SSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINIS  253 (495)
Q Consensus       174 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  253 (495)
                             ....++|+.|++.++ .++.+..     .     ... -.++|+.|++++|...+.++.......+|+.|+++
T Consensus       172 -------l~~l~~L~~L~l~~n-~i~~~~~-----~-----~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  232 (477)
T 2id5_A          172 -------LSHLHGLIVLRLRHL-NINAIRD-----Y-----SFK-RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT  232 (477)
T ss_dssp             -------HTTCTTCCEEEEESC-CCCEECT-----T-----CSC-SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEE
T ss_pred             -------hcccCCCcEEeCCCC-cCcEeCh-----h-----hcc-cCcccceeeCCCCccccccCcccccCccccEEECc
Confidence                   112446777777763 3333300     0     011 12667777777777776666655556677777777


Q ss_pred             CCCCCCccc-ccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-cccc
Q 011033          254 GCENLKILP-SGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPS  330 (495)
Q Consensus       254 ~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~  330 (495)
                      +| .+..++ ..+..+++|+.|++++|. +..++. .+..+++|+.|++++|......|..+..+++|++|++++ .+..
T Consensus       233 ~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  310 (477)
T 2id5_A          233 HC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT  310 (477)
T ss_dssp             SS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred             CC-cccccCHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence            74 344554 346677777777777773 444443 456667777777777764444455677777777777777 6665


Q ss_pred             ccCC--CCCCccceeEeeccCc
Q 011033          331 LEED--GLPTNLHSLHIWGNME  350 (495)
Q Consensus       331 ~~~~--~~~~~L~~L~l~~~~~  350 (495)
                      ++..  ..+++|++|++++|..
T Consensus       311 ~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          311 LEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             CCGGGBSCGGGCCEEECCSSCE
T ss_pred             eCHhHcCCCcccCEEEccCCCc
Confidence            5543  3456667777776653

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.92  E-value=2.9e-23  Score=217.35  Aligned_cols=426  Identities=17%  Similarity=0.132  Sum_probs=231.7

Q ss_pred             cccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCcccc-ccccCCCCccEEEEeCCCCCCCCCC--CC
Q 011033           20 SLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLP-QSSLSLSSLREIEIYKCSSLVSFPE--VA   96 (495)
Q Consensus        20 ~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~--~~   96 (495)
                      ++++|++++ +.++.|+++    .|.++    ++|++|+|++| .+..++ .+|.++++|++|+|++| .++.+|.  +.
T Consensus        53 ~~~~LdLs~-N~i~~l~~~----~f~~l----~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~  121 (635)
T 4g8a_A           53 STKNLDLSF-NPLRHLGSY----SFFSF----PELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFS  121 (635)
T ss_dssp             TCCEEECTT-SCCCEECTT----TTTTC----TTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGT
T ss_pred             CCCEEEeeC-CCCCCCCHH----HHhCC----CCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhc
Confidence            577777777 677777664    46777    77777777776 445554 35777777777777776 5666664  67


Q ss_pred             CCCCCcEEEEeCCCCCCcccc-ccccCCCCCccEEecccCcccccc--ccc-cCCCCccEEEeccCCCccccccccccc-
Q 011033           97 LPSKLKIIEIEGCDALKSLPE-AWMCDTNSSLETLYIEHCRTLTYL--AGV-QLPRSLKRLDILSCDNIRTLTVEEGIQ-  171 (495)
Q Consensus        97 ~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~--~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~-  171 (495)
                      .+++|++|++++|. +..++. .+..+  ++|++|++++|. ++.+  +.. ..+++|+.|+++++ .++.+. +..+. 
T Consensus       122 ~L~~L~~L~Ls~N~-l~~l~~~~~~~L--~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~l~~  195 (635)
T 4g8a_A          122 GLSSLQKLVAVETN-LASLENFPIGHL--KTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN-KIQSIY-CTDLRV  195 (635)
T ss_dssp             TCTTCCEEECTTSC-CCCSTTCCCTTC--TTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS-CCCEEC-GGGGHH
T ss_pred             CCCCCCEEECCCCc-CCCCChhhhhcC--cccCeeccccCc-cccCCCchhhccchhhhhhcccCc-cccccc-cccccc
Confidence            77777777777776 444544 34334  777777777743 3332  222 45677777777764 333221 00000 


Q ss_pred             ------------cCCCCc---cCcccCccccceeeecC---------------------------CC---CCccc----c
Q 011033          172 ------------SSSSSS---SNRRYTSSLLEKLEIRD---------------------------CP---SLTCI----F  202 (495)
Q Consensus       172 ------------~~~~~~---~~~~~~~~~L~~L~l~~---------------------------~~---~l~~~----~  202 (495)
                                  -+.+..   .........+..+++.+                           ..   .+...    +
T Consensus       196 L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~  275 (635)
T 4g8a_A          196 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL  275 (635)
T ss_dssp             HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTT
T ss_pred             hhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccc
Confidence                        000000   00000000011111110                           00   00000    0


Q ss_pred             c--------------CCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCC---------------------CCCC
Q 011033          203 S--------------QNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDN---------------------NTSL  247 (495)
Q Consensus       203 ~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---------------------~~~L  247 (495)
                      .              .........  ........++.+.+..+......+  +..                     +..|
T Consensus       276 ~~~~~l~~~~l~~~~~~~~~~~~~--~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~L  351 (635)
T 4g8a_A          276 EGLCNLTIEEFRLAYLDYYLDGII--DLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSL  351 (635)
T ss_dssp             GGGGGSEEEEEEEECCCSCEEECT--TTTGGGTTCSEEEEESCEEEECGG--GGSCCCCSEEEEESCEESSCCCCBCTTC
T ss_pred             ccccchhhhhhhhhhhcccccchh--hhhhhhcccccccccccccccccc--cccchhhhhhhcccccccCcCcccchhh
Confidence            0              000000000  000111334444444333222111  222                     3344


Q ss_pred             cEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCcc--ccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEec
Q 011033          248 ETINISGCENLKILPSGLHNLGQLQEIEIWECENLV--SFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIG  325 (495)
Q Consensus       248 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  325 (495)
                      +.+.+..+... .. .....+++|+.|++++|....  ..+.....+.+|+.+++..+. ...++..+..+++|+.+++.
T Consensus       352 ~~l~l~~n~~~-~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~l~l~  428 (635)
T 4g8a_A          352 KRLTFTSNKGG-NA-FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQ  428 (635)
T ss_dssp             CEEEEESCCSC-CB-CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS-EEEECSCCTTCTTCCEEECT
T ss_pred             hhcccccccCC-CC-cccccccccccchhhccccccccccccchhhhhhhhhhhccccc-cccccccccccccccchhhh
Confidence            44444443211 11 123356777777777763321  122233345577777777764 33344567778888888887


Q ss_pred             c-ccccc---cCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCc
Q 011033          326 G-ELPSL---EEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLT  401 (495)
Q Consensus       326 ~-~l~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~  401 (495)
                      . .....   ......++++.++++.|.. ....+.   .+..++.|+.|++++|. ....+..      ..+..+++|+
T Consensus       429 ~~~~~~~~~~~~~~~l~~l~~l~ls~n~l-~~~~~~---~~~~~~~L~~L~Ls~N~-~~~~~~~------~~~~~l~~L~  497 (635)
T 4g8a_A          429 HSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNG---IFNGLSSLEVLKMAGNS-FQENFLP------DIFTELRNLT  497 (635)
T ss_dssp             TSEEESTTSSCTTTTCTTCCEEECTTSCC-EECCTT---TTTTCTTCCEEECTTCE-EGGGEEC------SCCTTCTTCC
T ss_pred             hcccccccccccccccccccccccccccc-cccccc---ccccchhhhhhhhhhcc-cccccCc------hhhhhccccC
Confidence            6 22222   1224467888888888873 223232   57788999999999972 2222222      1234678999


Q ss_pred             eeeeccccccccc-ccccccCCCCCeEeccCCCCCCCCCCCC--CccccceeeccCCchhHHhhhcCCCeeeecceEEec
Q 011033          402 SLRIVDFPNLERL-SSSIVDLQNLTHLNLVDCPKLKYFPEKG--LPSSLLQLSIYRCPLMEEKCRKDGGLLTHIPSVQID  478 (495)
Q Consensus       402 ~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~i~~~~~~~i~  478 (495)
                      .|++++ +.++.+ |..+.++++|++|++++| +++.++...  .+++|++|++++|..............+.+..+++.
T Consensus       498 ~L~Ls~-N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~  575 (635)
T 4g8a_A          498 FLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT  575 (635)
T ss_dssp             EEECTT-SCCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECT
T ss_pred             EEECCC-CccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEee
Confidence            999999 467776 458899999999999995 688887643  378999999999964332222222112456667777


Q ss_pred             cCcc
Q 011033          479 LNGF  482 (495)
Q Consensus       479 ~~~~  482 (495)
                      +|-+
T Consensus       576 ~Np~  579 (635)
T 4g8a_A          576 QNDF  579 (635)
T ss_dssp             TCCB
T ss_pred             CCCC
Confidence            6554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=3.8e-23  Score=214.33  Aligned_cols=276  Identities=16%  Similarity=0.183  Sum_probs=119.1

Q ss_pred             cccceeecccccCCcccccc-ccCCCCccEEEEeCCCCCCCCCC--CCCCCCCcEEEEeCCCCCCcccc-ccccCCCCCc
Q 011033           52 CRLEYLRLSYCEGLVKLPQS-SLSLSSLREIEIYKCSSLVSFPE--VALPSKLKIIEIEGCDALKSLPE-AWMCDTNSSL  127 (495)
Q Consensus        52 ~~L~~L~ls~~~~l~~l~~~-~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L  127 (495)
                      ++++.|++++| .+..+|.. +..+++|++|++++| .++.+++  ++.+++|++|++++|. +..+++ .+..+  ++|
T Consensus        51 ~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l--~~L  125 (597)
T 3oja_B           51 NNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNV--PLL  125 (597)
T ss_dssp             CCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC--TTC
T ss_pred             CCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCC--CCC
Confidence            45555555554 33444432 344555555555554 3433332  4455555555555554 222322 22222  555


Q ss_pred             cEEecccCccccccccc--cCCCCccEEEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCC
Q 011033          128 ETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQN  205 (495)
Q Consensus       128 ~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  205 (495)
                      ++|++++| .++.++..  ..+++|+.|+++++ .+..+. +..+           ..+++|+.|+++++ .++.+    
T Consensus       126 ~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~-----------~~l~~L~~L~L~~N-~l~~~----  186 (597)
T 3oja_B          126 TVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN-NLERIE-DDTF-----------QATTSLQNLQLSSN-RLTHV----  186 (597)
T ss_dssp             CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCC-TTTT-----------TTCTTCCEEECTTS-CCSBC----
T ss_pred             CEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCC-cCCCCC-hhhh-----------hcCCcCcEEECcCC-CCCCc----
Confidence            55555553 34444432  34455555555553 222220 1111           11234555555542 23222    


Q ss_pred             CCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCcccc
Q 011033          206 ELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSF  285 (495)
Q Consensus       206 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l  285 (495)
                               +...+ ++|+.|++++|....     +...++|+.|++++| .+..++..+  .++|+.|++++| .+...
T Consensus       187 ---------~~~~l-~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n-~l~~~~~~~--~~~L~~L~L~~n-~l~~~  247 (597)
T 3oja_B          187 ---------DLSLI-PSLFHANVSYNLLST-----LAIPIAVEELDASHN-SINVVRGPV--NVELTILKLQHN-NLTDT  247 (597)
T ss_dssp             ---------CGGGC-TTCSEEECCSSCCSE-----EECCTTCSEEECCSS-CCCEEECSC--CSCCCEEECCSS-CCCCC
T ss_pred             ---------Chhhh-hhhhhhhcccCcccc-----ccCCchhheeeccCC-ccccccccc--CCCCCEEECCCC-CCCCC
Confidence                     11111 445555555443221     122344555555553 233332221  245555555554 22222


Q ss_pred             CCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCC-CCCCccceeEeeccCccchhhhcccccCC
Q 011033          286 PEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED-GLPTNLHSLHIWGNMEIWKSMIERGRGFH  363 (495)
Q Consensus       286 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  363 (495)
                       ..+..+++|+.|++++|......|..+..+++|+.|++++ .+..++.. ..+++|++|++++|...  .++.   .+.
T Consensus       248 -~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~--~i~~---~~~  321 (597)
T 3oja_B          248 -AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL--HVER---NQP  321 (597)
T ss_dssp             -GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC--CCGG---GHH
T ss_pred             -hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC--ccCc---ccc
Confidence             2233444555555555543333344555555555555555 44444333 22455555555555422  1111   234


Q ss_pred             CCCccceEEeecc
Q 011033          364 RFSSLRHLTIEGC  376 (495)
Q Consensus       364 ~l~~L~~L~l~~~  376 (495)
                      .+++|+.|++++|
T Consensus       322 ~l~~L~~L~L~~N  334 (597)
T 3oja_B          322 QFDRLENLYLDHN  334 (597)
T ss_dssp             HHTTCSEEECCSS
T ss_pred             cCCCCCEEECCCC
Confidence            4555555555555

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.89  E-value=3.4e-21  Score=184.77  Aligned_cols=182  Identities=14%  Similarity=0.178  Sum_probs=86.6

Q ss_pred             hcCCCCCCcEEeeeCCCCCC--cccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCC
Q 011033          240 RLDNNTSLETINISGCENLK--ILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLT  317 (495)
Q Consensus       240 ~~~~~~~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~  317 (495)
                      .+..+++|+.|++++|....  ..+..+..+++|++|++++| .++.++....  ++|+.|++++|......+..+..++
T Consensus       140 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~  216 (330)
T 1xku_A          140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLN  216 (330)
T ss_dssp             HHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCT
T ss_pred             HhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCC
Confidence            34445555555555432211  22334455555555655555 3444444322  4566666666543333344555566


Q ss_pred             CcceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccC
Q 011033          318 SLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTAL  394 (495)
Q Consensus       318 ~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  394 (495)
                      +|++|++++ .+..++..  ..+++|++|++++|.. . .++.   .+..+++|++|++++|  .+..++...-......
T Consensus       217 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~-~lp~---~l~~l~~L~~L~l~~N--~i~~~~~~~f~~~~~~  289 (330)
T 1xku_A          217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-V-KVPG---GLADHKYIQVVYLHNN--NISAIGSNDFCPPGYN  289 (330)
T ss_dssp             TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC-S-SCCT---TTTTCSSCCEEECCSS--CCCCCCTTSSSCSSCC
T ss_pred             CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC-c-cCCh---hhccCCCcCEEECCCC--cCCccChhhcCCcccc
Confidence            666666655 44444321  2345566666666542 2 2222   3566667777777776  5555544321000001


Q ss_pred             CCCCCCceeeecccccccc---cccccccCCCCCeEeccCC
Q 011033          395 PLPASLTSLRIVDFPNLER---LSSSIVDLQNLTHLNLVDC  432 (495)
Q Consensus       395 ~~~~~L~~L~l~~~~~l~~---l~~~~~~~~~L~~L~l~~c  432 (495)
                      ...++|+.|++++++ ++.   -|..+..+++|+.+++++|
T Consensus       290 ~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          290 TKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             TTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             cccccccceEeecCc-ccccccCccccccccceeEEEeccc
Confidence            123456666666633 222   2235555666666666654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.89  E-value=4.7e-21  Score=183.80  Aligned_cols=283  Identities=14%  Similarity=0.213  Sum_probs=159.2

Q ss_pred             ccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccc-cccCCCCccEEEEeCCCCCCCC-CC-C
Q 011033           19 CSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQ-SSLSLSSLREIEIYKCSSLVSF-PE-V   95 (495)
Q Consensus        19 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~l-~~-~   95 (495)
                      .+++.+++++ ..++.+|..     +      +++|++|++++| .+..++. .++.+++|++|++++| .++.+ |. +
T Consensus        31 c~l~~l~~~~-~~l~~lp~~-----~------~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~   96 (330)
T 1xku_A           31 CHLRVVQCSD-LGLEKVPKD-----L------PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINN-KISKISPGAF   96 (330)
T ss_dssp             EETTEEECTT-SCCCSCCCS-----C------CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTT
T ss_pred             CCCeEEEecC-CCccccCcc-----C------CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHh
Confidence            3788888888 567777664     2      267888999887 4455543 6888888999999887 56655 33 7


Q ss_pred             CCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc--cCCCCccEEEeccCCCcccccc-cccccc
Q 011033           96 ALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTV-EEGIQS  172 (495)
Q Consensus        96 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~-~~~~~~  172 (495)
                      +.+++|++|++++|. +..+|..+.    ++|++|+++++ .++.++..  ..+++|+.|+++++ .++...+ +..+  
T Consensus        97 ~~l~~L~~L~Ls~n~-l~~l~~~~~----~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~--  167 (330)
T 1xku_A           97 APLVKLERLYLSKNQ-LKELPEKMP----KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAF--  167 (330)
T ss_dssp             TTCTTCCEEECCSSC-CSBCCSSCC----TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSS-CCCGGGBCTTGG--
T ss_pred             cCCCCCCEEECCCCc-CCccChhhc----ccccEEECCCC-cccccCHhHhcCCccccEEECCCC-cCCccCcChhhc--
Confidence            788889999998877 667776654    67888888875 45554442  56778888888775 3322100 1111  


Q ss_pred             CCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEee
Q 011033          173 SSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINI  252 (495)
Q Consensus       173 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  252 (495)
                               ...++|+.|++++                                    |... .+|..+  .++|++|++
T Consensus       168 ---------~~l~~L~~L~l~~------------------------------------n~l~-~l~~~~--~~~L~~L~l  199 (330)
T 1xku_A          168 ---------QGMKKLSYIRIAD------------------------------------TNIT-TIPQGL--PPSLTELHL  199 (330)
T ss_dssp             ---------GGCTTCCEEECCS------------------------------------SCCC-SCCSSC--CTTCSEEEC
T ss_pred             ---------cCCCCcCEEECCC------------------------------------Cccc-cCCccc--cccCCEEEC
Confidence                     1123455555544                                    3222 122211  145555555


Q ss_pred             eCCCCCCcccccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-cccc
Q 011033          253 SGCENLKILPSGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPS  330 (495)
Q Consensus       253 ~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~  330 (495)
                      ++|......+..+..+++|++|++++| .++.++. .+..+++|+.|++++|. ++.+|..+..+++|++|++++ .+..
T Consensus       200 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i~~  277 (330)
T 1xku_A          200 DGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISA  277 (330)
T ss_dssp             TTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCcCCc
Confidence            553322222344555555555555555 2333322 34445555555555553 345555555555555555555 4444


Q ss_pred             ccCCC--------CCCccceeEeeccCccchhhhcccccCCCCCccceEEeecc
Q 011033          331 LEEDG--------LPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGC  376 (495)
Q Consensus       331 ~~~~~--------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  376 (495)
                      ++...        ..++++.|++++|+.....+..  ..+..+++++.+++++|
T Consensus       278 ~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~--~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP--STFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             CCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG--GGGTTCCCGGGEEC---
T ss_pred             cChhhcCCcccccccccccceEeecCcccccccCc--cccccccceeEEEeccc
Confidence            43321        1346667777777633222222  24566666777776665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.88  E-value=2.5e-21  Score=185.82  Aligned_cols=282  Identities=16%  Similarity=0.176  Sum_probs=158.0

Q ss_pred             ccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccc-cccccCCCCccEEEEeCCCCCCCCCC--C
Q 011033           19 CSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKL-PQSSLSLSSLREIEIYKCSSLVSFPE--V   95 (495)
Q Consensus        19 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~--~   95 (495)
                      .+++.+++++ ..++.+|.+     +      +++|++|++++|. +..+ +..+..+++|++|++++| .++.+++  +
T Consensus        33 c~l~~l~~~~-~~l~~ip~~-----~------~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~   98 (332)
T 2ft3_A           33 CHLRVVQCSD-LGLKAVPKE-----I------SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNN-KISKIHEKAF   98 (332)
T ss_dssp             EETTEEECCS-SCCSSCCSC-----C------CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECGGGS
T ss_pred             ccCCEEECCC-CCccccCCC-----C------CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCC-ccCccCHhHh
Confidence            3688888888 467777764     2      2778888888874 4544 456888888888888887 5665532  7


Q ss_pred             CCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc--cCCCCccEEEeccCCCcccccc-cccccc
Q 011033           96 ALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTV-EEGIQS  172 (495)
Q Consensus        96 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~-~~~~~~  172 (495)
                      +.+++|++|++++|. +..+|..+.    ++|++|+++++ .++.++..  ..+++|+.|+++++ .++...+ +..+  
T Consensus        99 ~~l~~L~~L~L~~n~-l~~l~~~~~----~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~--  169 (332)
T 2ft3_A           99 SPLRKLQKLYISKNH-LVEIPPNLP----SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAF--  169 (332)
T ss_dssp             TTCTTCCEEECCSSC-CCSCCSSCC----TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSS--
T ss_pred             hCcCCCCEEECCCCc-CCccCcccc----ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCC-ccccCCCCcccc--
Confidence            788888888888876 567776654    67888888875 45555543  56778888888775 3432100 1111  


Q ss_pred             CCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEee
Q 011033          173 SSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINI  252 (495)
Q Consensus       173 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  252 (495)
                                ...+++.|+++++ .++.+             +. .++++|++|++++|......+              
T Consensus       170 ----------~~l~L~~L~l~~n-~l~~l-------------~~-~~~~~L~~L~l~~n~i~~~~~--------------  210 (332)
T 2ft3_A          170 ----------DGLKLNYLRISEA-KLTGI-------------PK-DLPETLNELHLDHNKIQAIEL--------------  210 (332)
T ss_dssp             ----------CSCCCSCCBCCSS-BCSSC-------------CS-SSCSSCSCCBCCSSCCCCCCT--------------
T ss_pred             ----------cCCccCEEECcCC-CCCcc-------------Cc-cccCCCCEEECCCCcCCccCH--------------
Confidence                      0114555555552 22222             11 111344444444443333333              


Q ss_pred             eCCCCCCcccccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-cccc
Q 011033          253 SGCENLKILPSGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPS  330 (495)
Q Consensus       253 ~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~  330 (495)
                                ..+..+++|++|++++| .++.++. .+..+++|+.|++++|. ++.+|..+..+++|++|++++ .+..
T Consensus       211 ----------~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~l~~  278 (332)
T 2ft3_A          211 ----------EDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNITK  278 (332)
T ss_dssp             ----------TSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSCCCB
T ss_pred             ----------HHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCCCCc
Confidence                      34445555555555554 3333322 33444555555555543 334555555555555555555 4444


Q ss_pred             ccCCC--------CCCccceeEeeccCccchhhhcccccCCCCCccceEEeecc
Q 011033          331 LEEDG--------LPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGC  376 (495)
Q Consensus       331 ~~~~~--------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  376 (495)
                      ++...        ..++|+.|++.+|+........  ..+..+++|+.+++++|
T Consensus       279 ~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~--~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP--ATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             CCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG--GGGTTBCCSTTEEC---
T ss_pred             cChhHccccccccccccccceEeecCcccccccCc--ccccccchhhhhhcccc
Confidence            33221        1356777777777643222222  24666777777777765

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=1.8e-21  Score=186.15  Aligned_cols=219  Identities=24%  Similarity=0.361  Sum_probs=159.5

Q ss_pred             cccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC-CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEE
Q 011033           52 CRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE-VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETL  130 (495)
Q Consensus        52 ~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L  130 (495)
                      ++++.|++++| .+..+|..++++++|++|++++| .++.+|. ++.+++|++|++++|. +..+|..+..+  ++|++|
T Consensus        81 ~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l--~~L~~L  155 (328)
T 4fcg_A           81 PGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNP-LRALPASIASL--NRLREL  155 (328)
T ss_dssp             TTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGC--TTCCEE
T ss_pred             cceeEEEccCC-CchhcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCc-cccCcHHHhcC--cCCCEE
Confidence            67777777776 44677776777777777777776 4556665 6677777777777776 44667666655  677777


Q ss_pred             ecccCcccccccccc----------CCCCccEEEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcc
Q 011033          131 YIEHCRTLTYLAGVQ----------LPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTC  200 (495)
Q Consensus       131 ~l~~~~~l~~~~~~~----------~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  200 (495)
                      ++++|+....+|...          .+++|+.|+++++ .++.+  |..+                              
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~l--p~~l------------------------------  202 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSL--PASI------------------------------  202 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCC--CGGG------------------------------
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcc--hHhh------------------------------
Confidence            777766555555431          2455555555553 23222  2111                              


Q ss_pred             cccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCC
Q 011033          201 IFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECE  280 (495)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~  280 (495)
                                      .. .++|++|++++|... .+|..+..+++|+.|++++|.....+|..+..+++|++|++++|.
T Consensus       203 ----------------~~-l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~  264 (328)
T 4fcg_A          203 ----------------AN-LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS  264 (328)
T ss_dssp             ----------------GG-CTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCT
T ss_pred             ----------------cC-CCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCC
Confidence                            11 167888888877655 456668888999999999988888888888899999999999988


Q ss_pred             CccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc
Q 011033          281 NLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG  326 (495)
Q Consensus       281 ~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  326 (495)
                      ..+.+|..+..+++|+.|++++|...+.+|..+..+++|+.+++..
T Consensus       265 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             TCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred             chhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence            8888888888888999999999998899999999999999988866

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.87  E-value=2.4e-24  Score=223.80  Aligned_cols=408  Identities=14%  Similarity=0.142  Sum_probs=217.2

Q ss_pred             cccccccccEEecccccccccccc------hhhHHHHhhhhhcccccceeecccccCCcccccccc-CCCCccEEEEeCC
Q 011033           14 LLQDICSLRRLTITSCPKLQSLVA------EEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSL-SLSSLREIEIYKC   86 (495)
Q Consensus        14 ~~~~~~~L~~L~l~~c~~l~~i~~------~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~-~l~~L~~L~l~~~   86 (495)
                      .+.+|++|++|++++|..+.++.-      ..+..++..+...+++|++|++++|......+..+. .+++|++|++++|
T Consensus        61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B           61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            356789999999999876654321      111124555566679999999999864334444444 6899999999999


Q ss_pred             CCCCC--CCC-CCCCCCCcEEEEeCCCCCCcc-cccccc--CCCCCccEEecccCc-cccc--cccc-cCCCCccEEEec
Q 011033           87 SSLVS--FPE-VALPSKLKIIEIEGCDALKSL-PEAWMC--DTNSSLETLYIEHCR-TLTY--LAGV-QLPRSLKRLDIL  156 (495)
Q Consensus        87 ~~l~~--l~~-~~~~~~L~~L~l~~~~~~~~~-~~~~~~--~~~~~L~~L~l~~~~-~l~~--~~~~-~~~~~L~~L~l~  156 (495)
                      ..++.  ++. ...+++|++|++++|. +... +..+..  ..+++|++|++++|. .++.  +... ..+++|+.|++.
T Consensus       141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~  219 (594)
T 2p1m_B          141 EGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN  219 (594)
T ss_dssp             EEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC
T ss_pred             CCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC
Confidence            65554  333 4478999999999987 3332 222211  134789999999875 1211  2111 346899999999


Q ss_pred             cCCCccccccccccccCCCCccCcccCccccceeeecCCCC-CcccccCCCCcccccccccCCCCCCccEE-EeecCCCc
Q 011033          157 SCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPS-LTCIFSQNELPATLESLEVGNLPPSLKSL-FVWYCPKL  234 (495)
Q Consensus       157 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~~  234 (495)
                      +|..+..+  +..+           ...++|+.|.++.+.. +..-    .+ ..+.. .... .++|+.+ .+.. ...
T Consensus       220 ~~~~~~~l--~~~~-----------~~~~~L~~L~l~~~~~~~~~~----~~-~~l~~-~l~~-~~~L~~Ls~~~~-~~~  278 (594)
T 2p1m_B          220 RAVPLEKL--ATLL-----------QRAPQLEELGTGGYTAEVRPD----VY-SGLSV-ALSG-CKELRCLSGFWD-AVP  278 (594)
T ss_dssp             TTSCHHHH--HHHH-----------HHCTTCSEEECSBCCCCCCHH----HH-HHHHH-HHHT-CTTCCEEECCBT-CCG
T ss_pred             CCCcHHHH--HHHH-----------hcCCcceEcccccccCccchh----hH-HHHHH-HHhc-CCCcccccCCcc-cch
Confidence            98655543  3322           1244677777665432 0000    00 00000 0011 1455555 2221 112


Q ss_pred             hhhhhhcCCCCCCcEEeeeCCCCCCc--ccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecC--------cc
Q 011033          235 ESIAERLDNNTSLETINISGCENLKI--LPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYG--------CE  304 (495)
Q Consensus       235 ~~~~~~~~~~~~L~~L~l~~~~~~~~--l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~--------~~  304 (495)
                      ..++..+..+++|++|++++|. +..  +...+..+++|++|++++|.....++.....+++|+.|++.+        |.
T Consensus       279 ~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~  357 (594)
T 2p1m_B          279 AYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNV  357 (594)
T ss_dssp             GGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSS
T ss_pred             hhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCC
Confidence            3334334455666777776655 322  122244566677777766511111222223355677776633        22


Q ss_pred             ccccc--cccccCCCCcceeEecc-ccccccC--C-CCCCccceeEee-----ccCccc----h-hhhcccccCCCCCcc
Q 011033          305 RLEAL--PKGLHNLTSLQQLTIGG-ELPSLEE--D-GLPTNLHSLHIW-----GNMEIW----K-SMIERGRGFHRFSSL  368 (495)
Q Consensus       305 ~~~~~--~~~l~~l~~L~~L~l~~-~l~~~~~--~-~~~~~L~~L~l~-----~~~~~~----~-~~~~~~~~~~~l~~L  368 (495)
                      .++..  ......+++|++|.++. .+.....  . ..+++|++|+++     +|..++    + .+..   .+.++++|
T Consensus       358 ~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~---l~~~~~~L  434 (594)
T 2p1m_B          358 ALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA---IVEHCKDL  434 (594)
T ss_dssp             CCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHH---HHHHCTTC
T ss_pred             CCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHH---HHhhCCCc
Confidence            22211  11112356677765544 3322111  1 135677777777     344444    1 1111   35566777


Q ss_pred             ceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccc-ccc-cccCCCCCeEeccCCCCCCCCCC---CCC
Q 011033          369 RHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERL-SSS-IVDLQNLTHLNLVDCPKLKYFPE---KGL  443 (495)
Q Consensus       369 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~-~~~~~~L~~L~l~~c~~l~~l~~---~~~  443 (495)
                      ++|+++++ .....+..-.       ..+++|+.|++++|. ++.. ... ...+++|++|++++|+. +....   ...
T Consensus       435 ~~L~L~~~-l~~~~~~~l~-------~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~  504 (594)
T 2p1m_B          435 RRLSLSGL-LTDKVFEYIG-------TYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASK  504 (594)
T ss_dssp             CEEECCSS-CCHHHHHHHH-------HHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGG
T ss_pred             cEEeecCc-ccHHHHHHHH-------HhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHh
Confidence            77777552 1111111111       124577778877754 3321 112 25577788888888763 32111   122


Q ss_pred             ccccceeeccCCch
Q 011033          444 PSSLLQLSIYRCPL  457 (495)
Q Consensus       444 ~~~L~~L~l~~c~~  457 (495)
                      +++|++|++++|+.
T Consensus       505 l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          505 LETMRSLWMSSCSV  518 (594)
T ss_dssp             GGGSSEEEEESSCC
T ss_pred             CCCCCEEeeeCCCC
Confidence            57788888888865

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.87  E-value=2.9e-24  Score=223.12  Aligned_cols=403  Identities=14%  Similarity=0.064  Sum_probs=238.0

Q ss_pred             cccccccccEEecccccccccc---cc---hhhHHHHhhhhhcccccceeecccccCCccccccccC-CC-CccEEEEeC
Q 011033           14 LLQDICSLRRLTITSCPKLQSL---VA---EEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLS-LS-SLREIEIYK   85 (495)
Q Consensus        14 ~~~~~~~L~~L~l~~c~~l~~i---~~---~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~-l~-~L~~L~l~~   85 (495)
                      .+.++++|++|++++|..+...   +.   +....++..+...+++|++|++++|......+..+.. ++ +|++|++++
T Consensus        68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~  147 (592)
T 3ogk_B           68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDK  147 (592)
T ss_dssp             HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEES
T ss_pred             HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcC
Confidence            3567999999999987654321   10   0001245555556699999999998443334444544 34 499999999


Q ss_pred             CCCCCC--CCC-CCCCCCCcEEEEeCCCCCCc----cccccccCCCCCccEEecccCcccc-----ccccc-cCCCCccE
Q 011033           86 CSSLVS--FPE-VALPSKLKIIEIEGCDALKS----LPEAWMCDTNSSLETLYIEHCRTLT-----YLAGV-QLPRSLKR  152 (495)
Q Consensus        86 ~~~l~~--l~~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~l~-----~~~~~-~~~~~L~~  152 (495)
                      |..+..  ++. ...+++|++|++++|.....    ++......  ++|++|+++++. ++     .++.. ..+++|+.
T Consensus       148 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~--~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~  224 (592)
T 3ogk_B          148 CSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN--TSLEVLNFYMTE-FAKISPKDLETIARNCRSLVS  224 (592)
T ss_dssp             CEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC--CCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC--CCccEEEeeccC-CCccCHHHHHHHHhhCCCCcE
Confidence            863322  111 34689999999999863222    22222223  889999998854 33     22222 45789999


Q ss_pred             EEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCC
Q 011033          153 LDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCP  232 (495)
Q Consensus       153 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  232 (495)
                      |++.+| .+..+  +..+           ...++|+.+.++.+......   ...+      .....+++|+.+.++++ 
T Consensus       225 L~L~~~-~~~~l--~~~~-----------~~~~~L~~L~l~~~~~~~~~---~~~~------~~l~~~~~L~~L~l~~~-  280 (592)
T 3ogk_B          225 VKVGDF-EILEL--VGFF-----------KAAANLEEFCGGSLNEDIGM---PEKY------MNLVFPRKLCRLGLSYM-  280 (592)
T ss_dssp             EECSSC-BGGGG--HHHH-----------HHCTTCCEEEECBCCCCTTC---TTSS------SCCCCCTTCCEEEETTC-
T ss_pred             EeccCc-cHHHH--HHHH-----------hhhhHHHhhcccccccccch---HHHH------HHhhccccccccCcccc-
Confidence            999986 34333  3222           12456888888753221110   0000      11122367888888753 


Q ss_pred             CchhhhhhcCCCCCCcEEeeeCCCCCCc--ccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecC--------
Q 011033          233 KLESIAERLDNNTSLETINISGCENLKI--LPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYG--------  302 (495)
Q Consensus       233 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~--l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~--------  302 (495)
                      ....++..+..+++|++|++++|. +..  +...+..+++|++|+++++.....++.....+++|++|++++        
T Consensus       281 ~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~  359 (592)
T 3ogk_B          281 GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGME  359 (592)
T ss_dssp             CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTS
T ss_pred             chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccc
Confidence            344566667778888888888866 332  223356788888888874322223333445567888888884        


Q ss_pred             --cccccc--ccccccCCCCcceeEecc-ccccc--cCC-CCCCccceeEeec---cCccchh-----hhcccccCCCCC
Q 011033          303 --CERLEA--LPKGLHNLTSLQQLTIGG-ELPSL--EED-GLPTNLHSLHIWG---NMEIWKS-----MIERGRGFHRFS  366 (495)
Q Consensus       303 --~~~~~~--~~~~l~~l~~L~~L~l~~-~l~~~--~~~-~~~~~L~~L~l~~---~~~~~~~-----~~~~~~~~~~l~  366 (495)
                        |..++.  ++.....+++|++|+++. .+..-  ... ..+++|++|++++   |..+++.     +..   .+.+++
T Consensus       360 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~---~~~~~~  436 (592)
T 3ogk_B          360 DEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS---LLIGCK  436 (592)
T ss_dssp             STTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH---HHHHCT
T ss_pred             cccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH---HHHhCC
Confidence              555543  222344578888888855 33221  111 2267888888874   3344431     222   356678


Q ss_pred             ccceEEeecccccccc--chhhhccccccCCCCCCCceeeecccccccc--cccccccCCCCCeEeccCCCCCCC--CCC
Q 011033          367 SLRHLTIEGCDDDMVS--FPLEDKRLGTALPLPASLTSLRIVDFPNLER--LSSSIVDLQNLTHLNLVDCPKLKY--FPE  440 (495)
Q Consensus       367 ~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~l~~c~~l~~--l~~  440 (495)
                      +|++|++++|...+..  +....       ..+++|+.|++++|. ++.  ++..+..+++|++|++++|+ ++.  ++.
T Consensus       437 ~L~~L~L~~~~~~l~~~~~~~~~-------~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~  507 (592)
T 3ogk_B          437 KLRRFAFYLRQGGLTDLGLSYIG-------QYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAA  507 (592)
T ss_dssp             TCCEEEEECCGGGCCHHHHHHHH-------HSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHH
T ss_pred             CCCEEEEecCCCCccHHHHHHHH-------HhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHH
Confidence            8888888775221221  11111       135678888888754 443  34455678888888888877 433  111


Q ss_pred             C-CCccccceeeccCCc
Q 011033          441 K-GLPSSLLQLSIYRCP  456 (495)
Q Consensus       441 ~-~~~~~L~~L~l~~c~  456 (495)
                      . ..+++|++|++++|.
T Consensus       508 ~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          508 AVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             HHHHCSSCCEEEEESCB
T ss_pred             HHHhcCccCeeECcCCc
Confidence            1 126788888888887

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.87  E-value=8e-21  Score=182.30  Aligned_cols=182  Identities=14%  Similarity=0.164  Sum_probs=82.6

Q ss_pred             cCCCCCCcEEeeeCCCCC--CcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCC
Q 011033          241 LDNNTSLETINISGCENL--KILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTS  318 (495)
Q Consensus       241 ~~~~~~L~~L~l~~~~~~--~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~  318 (495)
                      +..+++|+.|++++|...  ...+..+..+ +|+.|++++| .++.+|....  ++|+.|++++|......+..+..+++
T Consensus       143 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~  218 (332)
T 2ft3_A          143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSK  218 (332)
T ss_dssp             GSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTT
T ss_pred             hCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-CCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCC
Confidence            444445555555443221  1223333333 5555555554 3444443322  35555555555433322344555555


Q ss_pred             cceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCC
Q 011033          319 LQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALP  395 (495)
Q Consensus       319 L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  395 (495)
                      |++|++++ .+..++..  ..+++|++|++++|.. . .++.   .+..+++|+.|++++|  .+..++...-.......
T Consensus       219 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~-~lp~---~l~~l~~L~~L~l~~N--~l~~~~~~~~~~~~~~~  291 (332)
T 2ft3_A          219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-S-RVPA---GLPDLKLLQVVYLHTN--NITKVGVNDFCPVGFGV  291 (332)
T ss_dssp             CSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC-C-BCCT---TGGGCTTCCEEECCSS--CCCBCCTTSSSCSSCCS
T ss_pred             CCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC-e-ecCh---hhhcCccCCEEECCCC--CCCccChhHcccccccc
Confidence            55555555 44444331  2345555555555542 2 1222   3556666777777766  55554442200000001


Q ss_pred             CCCCCceeeecccccc--cccccccccCCCCCeEeccCCC
Q 011033          396 LPASLTSLRIVDFPNL--ERLSSSIVDLQNLTHLNLVDCP  433 (495)
Q Consensus       396 ~~~~L~~L~l~~~~~l--~~l~~~~~~~~~L~~L~l~~c~  433 (495)
                      ..++|+.|++++++..  +..+..+..+++|+.+++++|+
T Consensus       292 ~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            1345666666664322  2223355666666666666653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.87  E-value=2e-21  Score=185.73  Aligned_cols=223  Identities=22%  Similarity=0.342  Sum_probs=181.0

Q ss_pred             cccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC-CC
Q 011033           18 ICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE-VA   96 (495)
Q Consensus        18 ~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~   96 (495)
                      .+++++|++++ +.++.+++.     +.++    ++|++|++++|. +..+|..++.+++|++|++++| .++.+|. ++
T Consensus        80 ~~~l~~L~L~~-n~l~~lp~~-----l~~l----~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~  147 (328)
T 4fcg_A           80 QPGRVALELRS-VPLPQFPDQ-----AFRL----SHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARN-PLRALPASIA  147 (328)
T ss_dssp             STTCCEEEEES-SCCSSCCSC-----GGGG----TTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGG
T ss_pred             ccceeEEEccC-CCchhcChh-----hhhC----CCCCEEECCCCC-ccchhHHHhccCCCCEEECCCC-ccccCcHHHh
Confidence            47899999999 678888885     7778    999999999984 5699988999999999999998 6778875 88


Q ss_pred             CCCCCcEEEEeCCCCCCcccccccc-------CCCCCccEEecccCccccccccc-cCCCCccEEEeccCCCcccccccc
Q 011033           97 LPSKLKIIEIEGCDALKSLPEAWMC-------DTNSSLETLYIEHCRTLTYLAGV-QLPRSLKRLDILSCDNIRTLTVEE  168 (495)
Q Consensus        97 ~~~~L~~L~l~~~~~~~~~~~~~~~-------~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~  168 (495)
                      .+++|++|++++|...+.+|..+..       ..+++|++|++++| .++.+|.. ..+++|+.|+++++ .++.+  +.
T Consensus       148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N-~l~~l--~~  223 (328)
T 4fcg_A          148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNS-PLSAL--GP  223 (328)
T ss_dssp             GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESS-CCCCC--CG
T ss_pred             cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCC-CCCcC--ch
Confidence            9999999999999888888887653       01389999999996 56677654 66789999999885 44433  22


Q ss_pred             ccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCc
Q 011033          169 GIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLE  248 (495)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  248 (495)
                      .+                            ..                   .++|+.|++++|...+.+|..+..+++|+
T Consensus       224 ~l----------------------------~~-------------------l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~  256 (328)
T 4fcg_A          224 AI----------------------------HH-------------------LPKLEELDLRGCTALRNYPPIFGGRAPLK  256 (328)
T ss_dssp             GG----------------------------GG-------------------CTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred             hh----------------------------cc-------------------CCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence            11                            01                   15677888887777777788888888899


Q ss_pred             EEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCc
Q 011033          249 TINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGC  303 (495)
Q Consensus       249 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~  303 (495)
                      .|++++|.....+|..+..+++|++|++++|...+.+|..+..+++++.+++..+
T Consensus       257 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             EEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             EEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            9999888888888888888889999999988888888888888888888888754

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.86  E-value=1.5e-21  Score=185.44  Aligned_cols=248  Identities=17%  Similarity=0.087  Sum_probs=152.8

Q ss_pred             cccceeecccccCCc--cccccccCCCCccEEEEeC-CCCCCCCCC-CCCCCCCcEEEEeCCCCCCccccccccCCCCCc
Q 011033           52 CRLEYLRLSYCEGLV--KLPQSSLSLSSLREIEIYK-CSSLVSFPE-VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSL  127 (495)
Q Consensus        52 ~~L~~L~ls~~~~l~--~l~~~~~~l~~L~~L~l~~-~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L  127 (495)
                      .+++.|++++|...+  .+|..++.+++|++|++++ |.....+|. ++.+++|++|++++|.....+|..+...  ++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l--~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI--KTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC--TTC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC--CCC
Confidence            467777777775544  5677777777777777774 433335554 6777777777777777444666666655  777


Q ss_pred             cEEecccCccccccccc-cCCCCccEEEeccCCCcc-ccccccccccCCCCccCcccCccccceeeecCCCCCcccccCC
Q 011033          128 ETLYIEHCRTLTYLAGV-QLPRSLKRLDILSCDNIR-TLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQN  205 (495)
Q Consensus       128 ~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  205 (495)
                      ++|++++|.....+|.. ..+++|+.|+++++ .++ .+  +..+                                   
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~--p~~l-----------------------------------  169 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAI--PDSY-----------------------------------  169 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEEC--CGGG-----------------------------------
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcC--CHHH-----------------------------------
Confidence            77777775322234432 45666777776664 232 22  2211                                   


Q ss_pred             CCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCcccc
Q 011033          206 ELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSF  285 (495)
Q Consensus       206 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l  285 (495)
                                 ..+.+.|+.|++++|.....+|..+..++ |+.|++++|......+..+..+++|+.|++++|. +...
T Consensus       170 -----------~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~  236 (313)
T 1ogq_A          170 -----------GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFD  236 (313)
T ss_dssp             -----------GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE-ECCB
T ss_pred             -----------hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc-eeee
Confidence                       11213566666666655555666666665 7777777754444455666777777777777763 3322


Q ss_pred             CCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccc-cccCCCCCCccceeEeeccCccc
Q 011033          286 PEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELP-SLEEDGLPTNLHSLHIWGNMEIW  352 (495)
Q Consensus       286 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~-~~~~~~~~~~L~~L~l~~~~~~~  352 (495)
                      +..+..+++|+.|++++|.....+|..+..+++|++|++++ .+. .+|....+++|+.+++++|+.+.
T Consensus       237 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          237 LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred             cCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence            22345566777777777765556677777777777777777 443 44555556677777777776443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.86  E-value=1.8e-22  Score=209.54  Aligned_cols=391  Identities=12%  Similarity=0.057  Sum_probs=248.5

Q ss_pred             ccccccEEecccccccccccchhhHHHHhhhhhcccc-cceeecccccCCc--cccccccCCCCccEEEEeCCCCCCCCC
Q 011033           17 DICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCR-LEYLRLSYCEGLV--KLPQSSLSLSSLREIEIYKCSSLVSFP   93 (495)
Q Consensus        17 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~-L~~L~ls~~~~l~--~l~~~~~~l~~L~~L~l~~~~~l~~l~   93 (495)
                      .+++|++|++++| .++..       .+..++..|++ |++|++++|..+.  .++.....+++|++|++++| .+...+
T Consensus       110 ~~~~L~~L~L~~~-~i~~~-------~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~~~  180 (592)
T 3ogk_B          110 NLRQLKSVHFRRM-IVSDL-------DLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES-SFSEKD  180 (592)
T ss_dssp             HCTTCCEEEEESC-BCCHH-------HHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTC-EEECCC
T ss_pred             hCCCCCeEEeecc-EecHH-------HHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccc-cccCcc
Confidence            7899999999996 45432       23333333466 9999999986433  23444558999999999998 444332


Q ss_pred             C------CCCCCCCcEEEEeCCCCC----CccccccccCCCCCccEEecccCccccccccc-cCCCCccEEEeccCCCcc
Q 011033           94 E------VALPSKLKIIEIEGCDAL----KSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV-QLPRSLKRLDILSCDNIR  162 (495)
Q Consensus        94 ~------~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~  162 (495)
                      .      ...+++|++|+++++...    ..++..+...  ++|++|++.+|. +..++.. ..+++|+.|.++++....
T Consensus       181 ~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~--~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~  257 (592)
T 3ogk_B          181 GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC--RSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDI  257 (592)
T ss_dssp             SHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC--TTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCT
T ss_pred             hhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC--CCCcEEeccCcc-HHHHHHHHhhhhHHHhhccccccccc
Confidence            1      346899999999998743    2333333344  899999999964 4444433 567899999998743321


Q ss_pred             ccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhh-hhhc
Q 011033          163 TLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESI-AERL  241 (495)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~  241 (495)
                      ..  ...        .......++++.+.+.++.. ..      ++.      .....++|++|++++|...... ...+
T Consensus       258 ~~--~~~--------~~~l~~~~~L~~L~l~~~~~-~~------l~~------~~~~~~~L~~L~Ls~~~l~~~~~~~~~  314 (592)
T 3ogk_B          258 GM--PEK--------YMNLVFPRKLCRLGLSYMGP-NE------MPI------LFPFAAQIRKLDLLYALLETEDHCTLI  314 (592)
T ss_dssp             TC--TTS--------SSCCCCCTTCCEEEETTCCT-TT------GGG------GGGGGGGCCEEEETTCCCCHHHHHHHH
T ss_pred             ch--HHH--------HHHhhccccccccCccccch-hH------HHH------HHhhcCCCcEEecCCCcCCHHHHHHHH
Confidence            11  100        01112245688887766321 11      111      1112378999999998844333 3457


Q ss_pred             CCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeC----------CCCccc--cCCCCCCCCCCcEEEecCccccccc
Q 011033          242 DNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWE----------CENLVS--FPEGGLPCAKLSKLRIYGCERLEAL  309 (495)
Q Consensus       242 ~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~----------~~~l~~--l~~~~~~~~~L~~L~l~~~~~~~~~  309 (495)
                      ..+++|+.|++.++.....++.....+++|++|++++          |..++.  +......+++|+.|++..+......
T Consensus       315 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~  394 (592)
T 3ogk_B          315 QKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES  394 (592)
T ss_dssp             TTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH
T ss_pred             HhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH
Confidence            8899999999984322223344446689999999994          545543  2223445789999999554332222


Q ss_pred             ccccc-CCCCcceeEecc-----ccccccC-------CCCCCccceeEeeccCc-cchhhhcccccCCCCCccceEEeec
Q 011033          310 PKGLH-NLTSLQQLTIGG-----ELPSLEE-------DGLPTNLHSLHIWGNME-IWKSMIERGRGFHRFSSLRHLTIEG  375 (495)
Q Consensus       310 ~~~l~-~l~~L~~L~l~~-----~l~~~~~-------~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~l~~L~~L~l~~  375 (495)
                      +..+. .+++|++|++++     .+...|.       ...+++|++|+++.|.. +.+....  .....+++|++|++++
T Consensus       395 ~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~--~~~~~~~~L~~L~L~~  472 (592)
T 3ogk_B          395 LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS--YIGQYSPNVRWMLLGY  472 (592)
T ss_dssp             HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH--HHHHSCTTCCEEEECS
T ss_pred             HHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH--HHHHhCccceEeeccC
Confidence            33444 388999999962     4444321       12378999999987653 3444333  2345589999999999


Q ss_pred             ccccccc--chhhhccccccCCCCCCCceeeecccccccc--cccccccCCCCCeEeccCCCCCCCCCCCC---Cccccc
Q 011033          376 CDDDMVS--FPLEDKRLGTALPLPASLTSLRIVDFPNLER--LSSSIVDLQNLTHLNLVDCPKLKYFPEKG---LPSSLL  448 (495)
Q Consensus       376 ~~~~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~l~~c~~l~~l~~~~---~~~~L~  448 (495)
                      |  .+..  ++...       ..+++|++|++++|+ ++.  ++.....+++|++|++++|+ ++......   .+|.+.
T Consensus       473 n--~l~~~~~~~~~-------~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~  541 (592)
T 3ogk_B          473 V--GESDEGLMEFS-------RGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWN  541 (592)
T ss_dssp             C--CSSHHHHHHHH-------TCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEE
T ss_pred             C--CCCHHHHHHHH-------hcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcE
Confidence            8  4432  23222       245799999999987 543  44456789999999999987 66543321   245555


Q ss_pred             eeeccCC
Q 011033          449 QLSIYRC  455 (495)
Q Consensus       449 ~L~l~~c  455 (495)
                      ...+...
T Consensus       542 ~~~~~~~  548 (592)
T 3ogk_B          542 IELIPSR  548 (592)
T ss_dssp             EEEECCC
T ss_pred             EEEecCc
Confidence            5555543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.85  E-value=4e-23  Score=207.79  Aligned_cols=373  Identities=19%  Similarity=0.185  Sum_probs=217.2

Q ss_pred             ccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCc----cccccccCCCCccEEEEeCCCCCCCCCC
Q 011033           19 CSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLV----KLPQSSLSLSSLREIEIYKCSSLVSFPE   94 (495)
Q Consensus        19 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~----~l~~~~~~l~~L~~L~l~~~~~l~~l~~   94 (495)
                      +.|++|++++ +.++....   ...+..+    ++|++|++++|....    .++..+..+++|++|++++| .+++...
T Consensus         3 ~~l~~L~Ls~-~~l~~~~~---~~~~~~~----~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~   73 (461)
T 1z7x_W            3 LDIQSLDIQC-EELSDARW---AELLPLL----QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGV   73 (461)
T ss_dssp             EEEEEEEEES-CCCCHHHH---HHHHHHH----TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHH
T ss_pred             ccceehhhhh-cccCchhH---HHHHhhc----CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHH
Confidence            5789999988 45654332   1345666    999999999985332    45666788899999999997 4543211


Q ss_pred             ---CCCCC----CCcEEEEeCCCCCC----ccccccccCCCCCccEEecccCcccccc-----ccc--cCCCCccEEEec
Q 011033           95 ---VALPS----KLKIIEIEGCDALK----SLPEAWMCDTNSSLETLYIEHCRTLTYL-----AGV--QLPRSLKRLDIL  156 (495)
Q Consensus        95 ---~~~~~----~L~~L~l~~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~--~~~~~L~~L~l~  156 (495)
                         ...+.    +|++|++++|....    .++..+...  ++|++|++++|. ++..     ...  ...++|+.|+++
T Consensus        74 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~--~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~  150 (461)
T 1z7x_W           74 HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL--PTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLE  150 (461)
T ss_dssp             HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSC--TTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccC--CceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECC
Confidence               22233    69999999987332    345555444  788999988864 4321     111  223467777777


Q ss_pred             cCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchh
Q 011033          157 SCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLES  236 (495)
Q Consensus       157 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  236 (495)
                      +| .++.... ..+.                                     .     .... .++|++|++++|...+.
T Consensus       151 ~n-~l~~~~~-~~l~-------------------------------------~-----~l~~-~~~L~~L~L~~n~i~~~  185 (461)
T 1z7x_W          151 YC-SLSAASC-EPLA-------------------------------------S-----VLRA-KPDFKELTVSNNDINEA  185 (461)
T ss_dssp             TS-CCBGGGH-HHHH-------------------------------------H-----HHHH-CTTCCEEECCSSBCHHH
T ss_pred             CC-CCCHHHH-HHHH-------------------------------------H-----HHhh-CCCCCEEECcCCCcchH
Confidence            75 3332100 0000                                     0     0000 14566666666654333


Q ss_pred             hhhhcC-----CCCCCcEEeeeCCCCCCc----ccccCCCCCCccEEEeeCCCCcccc------CCCCCCCCCCcEEEec
Q 011033          237 IAERLD-----NNTSLETINISGCENLKI----LPSGLHNLGQLQEIEIWECENLVSF------PEGGLPCAKLSKLRIY  301 (495)
Q Consensus       237 ~~~~~~-----~~~~L~~L~l~~~~~~~~----l~~~~~~l~~L~~L~l~~~~~l~~l------~~~~~~~~~L~~L~l~  301 (495)
                      .+..+.     ..++|++|++++|.....    ++..+..+++|++|++++| .++..      +.....+++|+.|+++
T Consensus       186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~  264 (461)
T 1z7x_W          186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIW  264 (461)
T ss_dssp             HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECc
Confidence            222222     345777777776533221    3445556677777777776 33321      1122245677777777


Q ss_pred             Ccccccc-----ccccccCCCCcceeEecc-cccc-----ccCC--CCCCccceeEeeccCccchhhhcccccCCCCCcc
Q 011033          302 GCERLEA-----LPKGLHNLTSLQQLTIGG-ELPS-----LEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSL  368 (495)
Q Consensus       302 ~~~~~~~-----~~~~l~~l~~L~~L~l~~-~l~~-----~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L  368 (495)
                      +|. ++.     ++..+..+++|++|++++ .+..     +...  ...++|++|++++|.............+..+++|
T Consensus       265 ~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  343 (461)
T 1z7x_W          265 ECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL  343 (461)
T ss_dssp             TSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSC
T ss_pred             CCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCc
Confidence            774 333     455666677777887777 4332     1111  1236899999999874332211111256778999


Q ss_pred             ceEEeeccccccccchhhhccccccCC-CCCCCceeeeccccccc-----ccccccccCCCCCeEeccCCCCCCCCCCC-
Q 011033          369 RHLTIEGCDDDMVSFPLEDKRLGTALP-LPASLTSLRIVDFPNLE-----RLSSSIVDLQNLTHLNLVDCPKLKYFPEK-  441 (495)
Q Consensus       369 ~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~-----~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-  441 (495)
                      ++|++++|  .+.......  +...+. ..++|+.|++++| .++     .++..+..+++|++|++++|+ ++..... 
T Consensus       344 ~~L~Ls~n--~i~~~~~~~--l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~-i~~~~~~~  417 (461)
T 1z7x_W          344 LELQISNN--RLEDAGVRE--LCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC-LGDAGILQ  417 (461)
T ss_dssp             CEEECCSS--BCHHHHHHH--HHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS-CCHHHHHH
T ss_pred             cEEEccCC--ccccccHHH--HHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC-CCHHHHHH
Confidence            99999998  444322110  000001 2468999999995 555     677788889999999999964 5542110 


Q ss_pred             ------CCccccceeeccCCc
Q 011033          442 ------GLPSSLLQLSIYRCP  456 (495)
Q Consensus       442 ------~~~~~L~~L~l~~c~  456 (495)
                            .....|+.|.+.++.
T Consensus       418 l~~~l~~~~~~L~~L~~~~~~  438 (461)
T 1z7x_W          418 LVESVRQPGCLLEQLVLYDIY  438 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTCC
T ss_pred             HHHHhccCCcchhheeecccc
Confidence                  112356667666653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.84  E-value=1.3e-20  Score=179.12  Aligned_cols=243  Identities=12%  Similarity=0.104  Sum_probs=182.1

Q ss_pred             ccccEEecccccccc---cccchhhHHHHhhhhhcccccceeeccc-ccCCccccccccCCCCccEEEEeCCCCCCCCCC
Q 011033           19 CSLRRLTITSCPKLQ---SLVAEEEKDQQQQLCELSCRLEYLRLSY-CEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE   94 (495)
Q Consensus        19 ~~L~~L~l~~c~~l~---~i~~~~~~~~~~~l~~~~~~L~~L~ls~-~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~   94 (495)
                      .++++|+++++ .++   .++.     .+.++    ++|++|++++ |...+.+|..++++++|++|++++|.....+|.
T Consensus        50 ~~l~~L~L~~~-~l~~~~~~~~-----~l~~l----~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~  119 (313)
T 1ogq_A           50 YRVNNLDLSGL-NLPKPYPIPS-----SLANL----PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD  119 (313)
T ss_dssp             CCEEEEEEECC-CCSSCEECCG-----GGGGC----TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG
T ss_pred             ceEEEEECCCC-CccCCcccCh-----hHhCC----CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH
Confidence            57999999994 566   4665     48888    9999999995 655568898899999999999999843336665


Q ss_pred             -CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc-cCCC-CccEEEeccCCCcc-cccccccc
Q 011033           95 -VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV-QLPR-SLKRLDILSCDNIR-TLTVEEGI  170 (495)
Q Consensus        95 -~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~-~L~~L~l~~~~~l~-~~~~~~~~  170 (495)
                       +..+++|++|++++|.....+|..+...  ++|++|++++|..-..+|.. ..++ +|+.|+++++ .+. .+  +..+
T Consensus       120 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N-~l~~~~--~~~~  194 (313)
T 1ogq_A          120 FLSQIKTLVTLDFSYNALSGTLPPSISSL--PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKI--PPTF  194 (313)
T ss_dssp             GGGGCTTCCEEECCSSEEESCCCGGGGGC--TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEEC--CGGG
T ss_pred             HHhCCCCCCEEeCCCCccCCcCChHHhcC--CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC-eeeccC--ChHH
Confidence             8899999999999998655788888776  89999999996533255544 4455 8888988875 332 22  2211


Q ss_pred             ccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEE
Q 011033          171 QSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETI  250 (495)
Q Consensus       171 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  250 (495)
                                                                    ..+ + |+.|++++|......+..+..+++|+.|
T Consensus       195 ----------------------------------------------~~l-~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  226 (313)
T 1ogq_A          195 ----------------------------------------------ANL-N-LAFVDLSRNMLEGDASVLFGSDKNTQKI  226 (313)
T ss_dssp             ----------------------------------------------GGC-C-CSEEECCSSEEEECCGGGCCTTSCCSEE
T ss_pred             ----------------------------------------------hCC-c-ccEEECcCCcccCcCCHHHhcCCCCCEE
Confidence                                                          011 2 7777777777666677778888888888


Q ss_pred             eeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc
Q 011033          251 NISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG  326 (495)
Q Consensus       251 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  326 (495)
                      ++++|......+ .+..+++|++|++++|.....+|..+..+++|+.|++++|.....+|.. ..+++|+.+++++
T Consensus       227 ~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~  300 (313)
T 1ogq_A          227 HLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYAN  300 (313)
T ss_dssp             ECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCS
T ss_pred             ECCCCceeeecC-cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcC
Confidence            888865433333 3777888889998888544467777777888889999888766677764 7788888888877

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.82  E-value=2.8e-18  Score=176.55  Aligned_cols=253  Identities=28%  Similarity=0.393  Sum_probs=143.5

Q ss_pred             ccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEec
Q 011033           53 RLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYI  132 (495)
Q Consensus        53 ~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l  132 (495)
                      +++.|++++| .+..+|..+.  ++|++|++++| .++.+|.  .+++|++|++++|. +..+|..   .  ++|++|++
T Consensus        41 ~l~~L~ls~n-~L~~lp~~l~--~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~~---l--~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGES-GLTTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPVL---P--PGLLELSI  108 (622)
T ss_dssp             CCCEEECCSS-CCSCCCSCCC--TTCSEEEECSC-CCSCCCC--CCTTCCEEEECSCC-CSCCCCC---C--TTCCEEEE
T ss_pred             CCcEEEecCC-CcCccChhhC--CCCcEEEecCC-CCCCCCC--cCCCCCEEEcCCCc-CCcCCCC---C--CCCCEEEC
Confidence            4666666665 3455555443  56666666665 4555554  45666666666655 4445541   2  55666666


Q ss_pred             ccCccccccccccCCCCccEEEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCccccc
Q 011033          133 EHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLE  212 (495)
Q Consensus       133 ~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  212 (495)
                      ++| .++.++.  .+++|+.|+++++ .++.+  +..              .++|+.|+++++ .++.+           
T Consensus       109 s~N-~l~~l~~--~l~~L~~L~L~~N-~l~~l--p~~--------------l~~L~~L~Ls~N-~l~~l-----------  156 (622)
T 3g06_A          109 FSN-PLTHLPA--LPSGLCKLWIFGN-QLTSL--PVL--------------PPGLQELSVSDN-QLASL-----------  156 (622)
T ss_dssp             CSC-CCCCCCC--CCTTCCEEECCSS-CCSCC--CCC--------------CTTCCEEECCSS-CCSCC-----------
T ss_pred             cCC-cCCCCCC--CCCCcCEEECCCC-CCCcC--CCC--------------CCCCCEEECcCC-cCCCc-----------
Confidence            653 3444444  4556666666653 34333  221              134556665553 33322           


Q ss_pred             ccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCC
Q 011033          213 SLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPC  292 (495)
Q Consensus       213 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~  292 (495)
                        +  ..+++|+.|++++|.... +|   ..+++|+.|++++| .+..+|..   +++|+.|++++| .++.++..   +
T Consensus       157 --~--~~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N-~l~~l~~~---~~~L~~L~L~~N-~l~~l~~~---~  220 (622)
T 3g06_A          157 --P--ALPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDN-QLASLPTL---PSELYKLWAYNN-RLTSLPAL---P  220 (622)
T ss_dssp             --C--CCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSSCCCC---C
T ss_pred             --C--CccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCC-CCCCCCCc---cchhhEEECcCC-cccccCCC---C
Confidence              1  123566667666554332 33   34567777777764 34445432   367777777776 45555542   3


Q ss_pred             CCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceE
Q 011033          293 AKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHL  371 (495)
Q Consensus       293 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L  371 (495)
                      ++|+.|++++|. ++.+|   ..+++|+.|++++ .+..+|.  .+++|+.|++++|. +. .++.   .+.++++|+.|
T Consensus       221 ~~L~~L~Ls~N~-L~~lp---~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~-L~-~lp~---~l~~l~~L~~L  289 (622)
T 3g06_A          221 SGLKELIVSGNR-LTSLP---VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQ-LT-RLPE---SLIHLSSETTV  289 (622)
T ss_dssp             TTCCEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSC-CC-SCCG---GGGGSCTTCEE
T ss_pred             CCCCEEEccCCc-cCcCC---CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCC-CC-cCCH---HHhhccccCEE
Confidence            567777777763 45555   3456777777777 6666655  56677777777775 33 2233   46677777777


Q ss_pred             Eeecc
Q 011033          372 TIEGC  376 (495)
Q Consensus       372 ~l~~~  376 (495)
                      ++++|
T Consensus       290 ~L~~N  294 (622)
T 3g06_A          290 NLEGN  294 (622)
T ss_dssp             ECCSC
T ss_pred             EecCC
Confidence            77776

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.82  E-value=3.3e-19  Score=172.52  Aligned_cols=266  Identities=14%  Similarity=0.095  Sum_probs=169.0

Q ss_pred             cccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccc-cccCCCCccEEEEeCCCCCCCCCC
Q 011033           16 QDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQ-SSLSLSSLREIEIYKCSSLVSFPE   94 (495)
Q Consensus        16 ~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~l~~   94 (495)
                      ..|+.....+.++ +.++.+|.+     +      +++|++|++++| .+..++. .+..+++|++|++++| .++.+++
T Consensus        28 ~~C~~~~~c~~~~-~~l~~iP~~-----~------~~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~   93 (353)
T 2z80_A           28 LSCDRNGICKGSS-GSLNSIPSG-----L------TEAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSN-GINTIEE   93 (353)
T ss_dssp             CEECTTSEEECCS-TTCSSCCTT-----C------CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCEECT
T ss_pred             CCCCCCeEeeCCC-CCccccccc-----c------cccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCC-ccCccCH
Confidence            3567777788887 678888764     2      267999999997 4566654 6888999999999887 6666643


Q ss_pred             --CCCCCCCcEEEEeCCCCCCccccc-cccCCCCCccEEecccCcccccccc---ccCCCCccEEEeccCCCcccccccc
Q 011033           95 --VALPSKLKIIEIEGCDALKSLPEA-WMCDTNSSLETLYIEHCRTLTYLAG---VQLPRSLKRLDILSCDNIRTLTVEE  168 (495)
Q Consensus        95 --~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~  168 (495)
                        ++.+++|++|++++|. +..++.. +...  ++|++|++++| .++.++.   ...+++|+.|+++++..+..+  +.
T Consensus        94 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l--~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~--~~  167 (353)
T 2z80_A           94 DSFSSLGSLEHLDLSYNY-LSNLSSSWFKPL--SSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKI--QR  167 (353)
T ss_dssp             TTTTTCTTCCEEECCSSC-CSSCCHHHHTTC--TTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEE--CT
T ss_pred             hhcCCCCCCCEEECCCCc-CCcCCHhHhCCC--ccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCcccccc--CH
Confidence              7888999999999887 5566665 4444  78899999885 4556655   255677777777775444333  11


Q ss_pred             ccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCc
Q 011033          169 GIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLE  248 (495)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  248 (495)
                      ..                           +.                  . .++|++|++++|......|..+..+++|+
T Consensus       168 ~~---------------------------~~------------------~-l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  201 (353)
T 2z80_A          168 KD---------------------------FA------------------G-LTFLEELEIDASDLQSYEPKSLKSIQNVS  201 (353)
T ss_dssp             TT---------------------------TT------------------T-CCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred             HH---------------------------cc------------------C-CCCCCEEECCCCCcCccCHHHHhccccCC
Confidence            00                           00                  0 15677777777766666666777778888


Q ss_pred             EEeeeCCCCCCccccc-CCCCCCccEEEeeCCCCccccCC----CCCCCCCCcEEEecCcccc----ccccccccCCCCc
Q 011033          249 TINISGCENLKILPSG-LHNLGQLQEIEIWECENLVSFPE----GGLPCAKLSKLRIYGCERL----EALPKGLHNLTSL  319 (495)
Q Consensus       249 ~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~~l~~l~~----~~~~~~~L~~L~l~~~~~~----~~~~~~l~~l~~L  319 (495)
                      +|++++|. +..++.. +..+++|+.|++++| .++.++.    .....+.++.++++++...    ..+|..+..+++|
T Consensus       202 ~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L  279 (353)
T 2z80_A          202 HLILHMKQ-HILLLEIFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGL  279 (353)
T ss_dssp             EEEEECSC-STTHHHHHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTC
T ss_pred             eecCCCCc-cccchhhhhhhcccccEEECCCC-ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCC
Confidence            88887754 4444433 334678888888877 3443321    1122345666666665322    2355566666777


Q ss_pred             ceeEecc-ccccccCC--CCCCccceeEeeccC
Q 011033          320 QQLTIGG-ELPSLEED--GLPTNLHSLHIWGNM  349 (495)
Q Consensus       320 ~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~  349 (495)
                      ++|++++ .+..++..  ..+++|++|++++|.
T Consensus       280 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          280 LELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence            7777766 55555442  234455555555554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.81  E-value=9.3e-19  Score=175.20  Aligned_cols=241  Identities=17%  Similarity=0.137  Sum_probs=167.1

Q ss_pred             cccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC--CCC
Q 011033           20 SLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--VAL   97 (495)
Q Consensus        20 ~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~   97 (495)
                      ..+.++.++ ..++.+|.+     +      +++|++|++++|......+..+..+++|++|++++| .++.++.  +..
T Consensus        55 ~~~~v~c~~-~~l~~iP~~-----~------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~  121 (452)
T 3zyi_A           55 QFSKVVCTR-RGLSEVPQG-----I------PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNG  121 (452)
T ss_dssp             SSCEEECCS-SCCSSCCSC-----C------CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTT
T ss_pred             CCcEEEECC-CCcCccCCC-----C------CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccC
Confidence            356777777 678888764     2      278999999998544444667899999999999998 6766653  788


Q ss_pred             CCCCcEEEEeCCCCCCccccc-cccCCCCCccEEecccCccccccccc--cCCCCccEEEeccCCCccccccccccccCC
Q 011033           98 PSKLKIIEIEGCDALKSLPEA-WMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTVEEGIQSSS  174 (495)
Q Consensus        98 ~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  174 (495)
                      +++|++|++++|. +..++.. +...  ++|++|++++| .++.++..  ..+++|+.|+++++..++.+  +...    
T Consensus       122 l~~L~~L~L~~n~-l~~~~~~~~~~l--~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i--~~~~----  191 (452)
T 3zyi_A          122 LASLNTLELFDNW-LTVIPSGAFEYL--SKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYI--SEGA----  191 (452)
T ss_dssp             CTTCCEEECCSSC-CSBCCTTTSSSC--TTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEE--CTTT----
T ss_pred             cccCCEEECCCCc-CCccChhhhccc--CCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCcccc--Chhh----
Confidence            9999999999987 5566654 4334  88999999985 46666653  66889999999988777766  3321    


Q ss_pred             CCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeC
Q 011033          175 SSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISG  254 (495)
Q Consensus       175 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  254 (495)
                            ....++|+.|+++++ .++.+             +.....++|+.|++++|...+..+..+..+++|+.|++++
T Consensus       192 ------~~~l~~L~~L~L~~n-~l~~~-------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  251 (452)
T 3zyi_A          192 ------FEGLFNLKYLNLGMC-NIKDM-------------PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN  251 (452)
T ss_dssp             ------TTTCTTCCEEECTTS-CCSSC-------------CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTT
T ss_pred             ------ccCCCCCCEEECCCC-ccccc-------------ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCC
Confidence                  112456777777773 44433             2122236677777777776666666777777777777777


Q ss_pred             CCCCCcccccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEEEecCcc
Q 011033          255 CENLKILPSGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLRIYGCE  304 (495)
Q Consensus       255 ~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~  304 (495)
                      |......+..+..+++|+.|++++| .++.++. .+..+++|+.|++++|+
T Consensus       252 n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          252 SQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             CcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence            5433333556677777777777777 4555554 44556777777777764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.81  E-value=3.1e-21  Score=200.40  Aligned_cols=370  Identities=15%  Similarity=0.135  Sum_probs=209.2

Q ss_pred             ccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCcc--ccccccCCCCccEEEEeCCCCCCCC
Q 011033           15 LQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVK--LPQSSLSLSSLREIEIYKCSSLVSF   92 (495)
Q Consensus        15 ~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~--l~~~~~~l~~L~~L~l~~~~~l~~l   92 (495)
                      ...+++|++|++++|. ++..       .+..++..+++|++|++++|..++.  ++..+..+++|++|++++|. ++..
T Consensus       101 ~~~~~~L~~L~L~~~~-~~~~-------~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~  171 (594)
T 2p1m_B          101 SSSYTWLEEIRLKRMV-VTDD-------CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDV  171 (594)
T ss_dssp             HHHCTTCCEEEEESCB-CCHH-------HHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECC
T ss_pred             HHhCCCCCeEEeeCcE-EcHH-------HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCc
Confidence            3578899999999964 4432       2444444459999999999966554  55556689999999999984 4432


Q ss_pred             -----CC-CCCCCCCcEEEEeCCC-CCC--ccccccccCCCCCccEEecccCccccccccc-cCCCCccEEEeccCCC-c
Q 011033           93 -----PE-VALPSKLKIIEIEGCD-ALK--SLPEAWMCDTNSSLETLYIEHCRTLTYLAGV-QLPRSLKRLDILSCDN-I  161 (495)
Q Consensus        93 -----~~-~~~~~~L~~L~l~~~~-~~~--~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~-l  161 (495)
                           +. ...+++|++|++++|. .+.  .++.....  +++|++|++.+|..++.++.. ..+++|+.|.+..+.. +
T Consensus       172 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~--~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~  249 (594)
T 2p1m_B          172 SGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR--CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEV  249 (594)
T ss_dssp             CGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHH--CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCC
T ss_pred             chHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHh--CCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCcc
Confidence                 22 3468899999999986 111  11122222  388999999998666665544 5678899998876532 1


Q ss_pred             ccccc---ccccccCCCCccCcccCcccccee-eecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchh-
Q 011033          162 RTLTV---EEGIQSSSSSSSNRRYTSSLLEKL-EIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLES-  236 (495)
Q Consensus       162 ~~~~~---~~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-  236 (495)
                      ..-.+   +..+           ..+++|+.+ .+.+   ..        ...++.  .....++|++|++++|..... 
T Consensus       250 ~~~~~~~l~~~l-----------~~~~~L~~Ls~~~~---~~--------~~~l~~--~~~~~~~L~~L~L~~~~l~~~~  305 (594)
T 2p1m_B          250 RPDVYSGLSVAL-----------SGCKELRCLSGFWD---AV--------PAYLPA--VYSVCSRLTTLNLSYATVQSYD  305 (594)
T ss_dssp             CHHHHHHHHHHH-----------HTCTTCCEEECCBT---CC--------GGGGGG--GHHHHTTCCEEECTTCCCCHHH
T ss_pred             chhhHHHHHHHH-----------hcCCCcccccCCcc---cc--------hhhHHH--HHHhhCCCCEEEccCCCCCHHH
Confidence            10000   1000           112233333 1111   00        000000  000126788888887773332 


Q ss_pred             hhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCC--------CCcccc--CCCCCCCCCCcEEEecCcccc
Q 011033          237 IAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWEC--------ENLVSF--PEGGLPCAKLSKLRIYGCERL  306 (495)
Q Consensus       237 ~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~--------~~l~~l--~~~~~~~~~L~~L~l~~~~~~  306 (495)
                      +...+..+++|++|++.+|.....++.....+++|++|+++.+        ..++..  ......+++|+.|.+..+. +
T Consensus       306 l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~-l  384 (594)
T 2p1m_B          306 LVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ-M  384 (594)
T ss_dssp             HHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESC-C
T ss_pred             HHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCC-c
Confidence            2334567788888888776111112222334677888888442        222211  1112236678888665443 3


Q ss_pred             cc-ccccc-cCCCCcceeEec-------cccccccC-------CCCCCccceeEeeccCccchhhhcccccCCCCCccce
Q 011033          307 EA-LPKGL-HNLTSLQQLTIG-------GELPSLEE-------DGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRH  370 (495)
Q Consensus       307 ~~-~~~~l-~~l~~L~~L~l~-------~~l~~~~~-------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~  370 (495)
                      +. ....+ ..+++|+.|+++       ..+...+.       ...+++|++|++++  .+.+....  .....+++|+.
T Consensus       385 ~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~--~l~~~~~~L~~  460 (594)
T 2p1m_B          385 TNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFE--YIGTYAKKMEM  460 (594)
T ss_dssp             CHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHH--HHHHHCTTCCE
T ss_pred             CHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHH--HHHHhchhccE
Confidence            32 12222 246788888887       13332211       12356788888866  34443333  12223778888


Q ss_pred             EEeecccccccc--chhhhccccccCCCCCCCceeeeccccccccc--ccccccCCCCCeEeccCCCC
Q 011033          371 LTIEGCDDDMVS--FPLEDKRLGTALPLPASLTSLRIVDFPNLERL--SSSIVDLQNLTHLNLVDCPK  434 (495)
Q Consensus       371 L~l~~~~~~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~~~~L~~L~l~~c~~  434 (495)
                      |++++|  .+..  +..-.       ..+++|+.|++++|+. +..  ......+++|++|++++|+.
T Consensus       461 L~L~~~--~i~~~~~~~l~-------~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          461 LSVAFA--GDSDLGMHHVL-------SGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             EEEESC--CSSHHHHHHHH-------HHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             eeccCC--CCcHHHHHHHH-------hcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            888887  3322  11110       1246888888888765 332  22445678888888888863

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.81  E-value=4.8e-18  Score=174.77  Aligned_cols=255  Identities=26%  Similarity=0.265  Sum_probs=200.6

Q ss_pred             ccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCC
Q 011033           19 CSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALP   98 (495)
Q Consensus        19 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~   98 (495)
                      .+++.|++++ +.++.+|..     +      +++|++|++++| .+..+|.   .+++|++|++++| .++.+|.  .+
T Consensus        40 ~~l~~L~ls~-n~L~~lp~~-----l------~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~--~l  100 (622)
T 3g06_A           40 NGNAVLNVGE-SGLTTLPDC-----L------PAHITTLVIPDN-NLTSLPA---LPPELRTLEVSGN-QLTSLPV--LP  100 (622)
T ss_dssp             HCCCEEECCS-SCCSCCCSC-----C------CTTCSEEEECSC-CCSCCCC---CCTTCCEEEECSC-CCSCCCC--CC
T ss_pred             CCCcEEEecC-CCcCccChh-----h------CCCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCC-cCCcCCC--CC
Confidence            3699999999 678888774     2      278999999998 5678886   6789999999998 6888886  88


Q ss_pred             CCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccccCCCCccEEEeccCCCccccccccccccCCCCcc
Q 011033           99 SKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSS  178 (495)
Q Consensus        99 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  178 (495)
                      ++|++|++++|. +..+|..   .  ++|+.|++++| .++.+|.  .+++|+.|+++++ .++.+  +..         
T Consensus       101 ~~L~~L~Ls~N~-l~~l~~~---l--~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N-~l~~l--~~~---------  159 (622)
T 3g06_A          101 PGLLELSIFSNP-LTHLPAL---P--SGLCKLWIFGN-QLTSLPV--LPPGLQELSVSDN-QLASL--PAL---------  159 (622)
T ss_dssp             TTCCEEEECSCC-CCCCCCC---C--TTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCSCC--CCC---------
T ss_pred             CCCCEEECcCCc-CCCCCCC---C--CCcCEEECCCC-CCCcCCC--CCCCCCEEECcCC-cCCCc--CCc---------
Confidence            999999999987 6667762   3  78999999985 5777776  3589999999996 56554  432         


Q ss_pred             CcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCC
Q 011033          179 NRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENL  258 (495)
Q Consensus       179 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  258 (495)
                           ..+++.|++++ +.++.+             +  ..+++|+.|++++|... .+|.   .+++|+.|++++| .+
T Consensus       160 -----~~~L~~L~L~~-N~l~~l-------------~--~~~~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N-~l  213 (622)
T 3g06_A          160 -----PSELCKLWAYN-NQLTSL-------------P--MLPSGLQELSVSDNQLA-SLPT---LPSELYKLWAYNN-RL  213 (622)
T ss_dssp             -----CTTCCEEECCS-SCCSCC-------------C--CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSS-CC
T ss_pred             -----cCCCCEEECCC-CCCCCC-------------c--ccCCCCcEEECCCCCCC-CCCC---ccchhhEEECcCC-cc
Confidence                 23688999888 455554             3  34488999999987654 3443   3579999999985 56


Q ss_pred             CcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCC-CC
Q 011033          259 KILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED-GL  336 (495)
Q Consensus       259 ~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~-~~  336 (495)
                      ..+|..   +++|+.|++++| .++.+|   ..+++|+.|++++|. ++.+|.   .+++|+.|++++ .+..+|.. ..
T Consensus       214 ~~l~~~---~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~  282 (622)
T 3g06_A          214 TSLPAL---PSGLKELIVSGN-RLTSLP---VLPSELKELMVSGNR-LTSLPM---LPSGLLSLSVYRNQLTRLPESLIH  282 (622)
T ss_dssp             SSCCCC---CTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCCSCCGGGGG
T ss_pred             cccCCC---CCCCCEEEccCC-ccCcCC---CCCCcCcEEECCCCC-CCcCCc---ccccCcEEeCCCCCCCcCCHHHhh
Confidence            666643   488999999998 677776   345799999999985 667876   678999999999 88888764 56


Q ss_pred             CCccceeEeeccCc
Q 011033          337 PTNLHSLHIWGNME  350 (495)
Q Consensus       337 ~~~L~~L~l~~~~~  350 (495)
                      +++|+.|++++|..
T Consensus       283 l~~L~~L~L~~N~l  296 (622)
T 3g06_A          283 LSSETTVNLEGNPL  296 (622)
T ss_dssp             SCTTCEEECCSCCC
T ss_pred             ccccCEEEecCCCC
Confidence            78999999999984

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.81  E-value=6.6e-19  Score=170.42  Aligned_cols=105  Identities=19%  Similarity=0.175  Sum_probs=50.6

Q ss_pred             CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccc--cCCCCCCccEEEeeCCCCccccC-CCCCCCCCCcE
Q 011033          221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPS--GLHNLGQLQEIEIWECENLVSFP-EGGLPCAKLSK  297 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~  297 (495)
                      ++|++|++++|...+..+..+..+++|++|++++| .+..++.  .+..+++|++|++++|..++.++ ..+..+++|+.
T Consensus       100 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  178 (353)
T 2z80_A          100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE  178 (353)
T ss_dssp             TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred             CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence            34444444444333322333455555555555553 2333433  34555566666665554344443 24444555555


Q ss_pred             EEecCccccccccccccCCCCcceeEecc
Q 011033          298 LRIYGCERLEALPKGLHNLTSLQQLTIGG  326 (495)
Q Consensus       298 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  326 (495)
                      |++++|......|..+..+++|++|++++
T Consensus       179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  207 (353)
T 2z80_A          179 LEIDASDLQSYEPKSLKSIQNVSHLILHM  207 (353)
T ss_dssp             EEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred             EECCCCCcCccCHHHHhccccCCeecCCC
Confidence            55555543333344455555555555544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.80  E-value=1.3e-18  Score=173.57  Aligned_cols=240  Identities=17%  Similarity=0.163  Sum_probs=156.9

Q ss_pred             cccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccc-cccccCCCCccEEEEeCCCCCCCCCC--CC
Q 011033           20 SLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKL-PQSSLSLSSLREIEIYKCSSLVSFPE--VA   96 (495)
Q Consensus        20 ~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~--~~   96 (495)
                      ..+.++.++ ..++.+|.+     +.      ++++.|++++|. +..+ +..+..+++|++|++++| .++.++.  +.
T Consensus        44 ~~~~v~c~~-~~l~~iP~~-----~~------~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~  109 (440)
T 3zyj_A           44 QFSKVICVR-KNLREVPDG-----IS------TNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFN  109 (440)
T ss_dssp             TSCEEECCS-CCCSSCCSC-----CC------TTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGT
T ss_pred             CCCEEEeCC-CCcCcCCCC-----CC------CCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCC-cCCccChhhcc
Confidence            356777777 678888775     32      778999999984 4544 466889999999999997 6766663  78


Q ss_pred             CCCCCcEEEEeCCCCCCccccc-cccCCCCCccEEecccCccccccccc--cCCCCccEEEeccCCCccccccccccccC
Q 011033           97 LPSKLKIIEIEGCDALKSLPEA-WMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTVEEGIQSS  173 (495)
Q Consensus        97 ~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  173 (495)
                      .+++|++|++++|. +..++.. +...  ++|++|++++| .++.++..  ..+++|+.|+++++..+..+  +...   
T Consensus       110 ~l~~L~~L~L~~n~-l~~~~~~~~~~l--~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i--~~~~---  180 (440)
T 3zyj_A          110 GLANLNTLELFDNR-LTTIPNGAFVYL--SKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYI--SEGA---  180 (440)
T ss_dssp             TCSSCCEEECCSSC-CSSCCTTTSCSC--SSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEE--CTTT---
T ss_pred             CCccCCEEECCCCc-CCeeCHhHhhcc--ccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCccee--Ccch---
Confidence            88999999999987 5566653 4444  88999999885 46666653  56789999999887777655  3321   


Q ss_pred             CCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeee
Q 011033          174 SSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINIS  253 (495)
Q Consensus       174 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  253 (495)
                             ....++|+.|+++++ .++.+             +...-.++|+.|++++|......+..+..+++|+.|+++
T Consensus       181 -------~~~l~~L~~L~L~~n-~l~~~-------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  239 (440)
T 3zyj_A          181 -------FEGLSNLRYLNLAMC-NLREI-------------PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI  239 (440)
T ss_dssp             -------TTTCSSCCEEECTTS-CCSSC-------------CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred             -------hhcccccCeecCCCC-cCccc-------------cccCCCcccCEEECCCCccCccChhhhccCccCCEEECC
Confidence                   112445777777663 34433             111222566677776665555555566666677777776


Q ss_pred             CCCCCCcccccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEEEecCcc
Q 011033          254 GCENLKILPSGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLRIYGCE  304 (495)
Q Consensus       254 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~  304 (495)
                      +|......+..+.++++|+.|++++| .++.++. .+..+++|+.|++++|+
T Consensus       240 ~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          240 QSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             TCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             CCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence            64333223445666666777777666 4444443 34455666666666654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.80  E-value=3.3e-18  Score=170.59  Aligned_cols=198  Identities=18%  Similarity=0.212  Sum_probs=145.3

Q ss_pred             CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCccc-ccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEE
Q 011033          221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILP-SGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKL  298 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L  298 (495)
                      ++|+.|++++|......+..+..+++|++|++++| .+..++ ..+..+++|++|++++| .++.++. .+..+++|+.|
T Consensus        88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L  165 (440)
T 3zyj_A           88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRL  165 (440)
T ss_dssp             SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEe
Confidence            66777777777666555667788888888888885 455554 35778888888888887 4555554 66677888888


Q ss_pred             EecCccccccccc-cccCCCCcceeEecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeecc
Q 011033          299 RIYGCERLEALPK-GLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGC  376 (495)
Q Consensus       299 ~l~~~~~~~~~~~-~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  376 (495)
                      ++++|..+..++. .+..+++|++|++++ .+..++....+++|++|++++|. +....+.   .+.++++|+.|++++|
T Consensus       166 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~---~~~~l~~L~~L~L~~n  241 (440)
T 3zyj_A          166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNH-LSAIRPG---SFQGLMHLQKLWMIQS  241 (440)
T ss_dssp             ECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSC-CCEECTT---TTTTCTTCCEEECTTC
T ss_pred             CCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCc-cCccChh---hhccCccCCEEECCCC
Confidence            8888777777665 577888888888888 77777776777888888888886 3333333   6778888888888887


Q ss_pred             ccccccchhhhccccccCCCCCCCceeeeccccccccccc-ccccCCCCCeEeccCCC
Q 011033          377 DDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-SIVDLQNLTHLNLVDCP  433 (495)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~  433 (495)
                        .+..++...      +..+++|+.|++++ +.++.++. .+..+++|+.|++++|+
T Consensus       242 --~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          242 --QIQVIERNA------FDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             --CCCEECTTS------STTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             --ceeEEChhh------hcCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCCC
Confidence              666654422      33567888888888 57777765 56778888888888765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.80  E-value=7.4e-20  Score=174.23  Aligned_cols=239  Identities=14%  Similarity=0.095  Sum_probs=142.7

Q ss_pred             cccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCCCCCcEEEEeCCCCCCccccccccCCCCCccE
Q 011033           50 LSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLET  129 (495)
Q Consensus        50 ~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~  129 (495)
                      .+++|++|++++|......|..+..+++|++|++++| .+...+++..+++|++|++++|. +..++..      ++|++
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~------~~L~~  103 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLDLESLSTLRTLDLNNNY-VQELLVG------PSIET  103 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEEETTCTTCCEEECCSSE-EEEEEEC------TTCCE
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchhhhhcCCCCEEECcCCc-cccccCC------CCcCE
Confidence            3478888888887433333356778888888888887 55544457778888888888876 4544432      67888


Q ss_pred             EecccCccccccccccCCCCccEEEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcc
Q 011033          130 LYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPA  209 (495)
Q Consensus       130 L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  209 (495)
                      |++++| .++.++.. .+++|+.|+++++ .++.+  +...          ....++|+.|+++++ .++.+.     +.
T Consensus       104 L~l~~n-~l~~~~~~-~~~~L~~L~l~~N-~l~~~--~~~~----------~~~l~~L~~L~Ls~N-~l~~~~-----~~  162 (317)
T 3o53_A          104 LHAANN-NISRVSCS-RGQGKKNIYLANN-KITML--RDLD----------EGCRSRVQYLDLKLN-EIDTVN-----FA  162 (317)
T ss_dssp             EECCSS-CCSEEEEC-CCSSCEEEECCSS-CCCSG--GGBC----------TGGGSSEEEEECTTS-CCCEEE-----GG
T ss_pred             EECCCC-ccCCcCcc-ccCCCCEEECCCC-CCCCc--cchh----------hhccCCCCEEECCCC-CCCccc-----HH
Confidence            888874 45554443 3567888887774 44433  2111          011345666666652 333320     00


Q ss_pred             cccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCC
Q 011033          210 TLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGG  289 (495)
Q Consensus       210 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~  289 (495)
                           ....-.++|++|++++|..... +. ...+++|++|++++| .+..++..+..+++|+.|++++| .++.+|..+
T Consensus       163 -----~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~  233 (317)
T 3o53_A          163 -----ELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKAL  233 (317)
T ss_dssp             -----GGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTC
T ss_pred             -----HHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-cccchhhHh
Confidence                 0001125677777776654333 22 234667777777764 44455555666777777777776 555666666


Q ss_pred             CCCCCCcEEEecCcccc-ccccccccCCCCcceeEecc
Q 011033          290 LPCAKLSKLRIYGCERL-EALPKGLHNLTSLQQLTIGG  326 (495)
Q Consensus       290 ~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~  326 (495)
                      ..+++|+.|++++|+.. ..+|.++..+++|+.+++.+
T Consensus       234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~  271 (317)
T 3o53_A          234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT  271 (317)
T ss_dssp             CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence            66667777777776654 34555666666666666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.80  E-value=4.8e-18  Score=170.05  Aligned_cols=198  Identities=21%  Similarity=0.245  Sum_probs=141.8

Q ss_pred             CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCccc-ccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEE
Q 011033          221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILP-SGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKL  298 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L  298 (495)
                      ++|+.|++++|......+..+..+++|+.|++++|. +..++ ..+..+++|++|++++| .++.++. .+..+++|+.|
T Consensus        99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L  176 (452)
T 3zyi_A           99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRL  176 (452)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEE
Confidence            667777777776665556677788888888888754 44554 44777888888888887 4555554 56677888888


Q ss_pred             EecCccccccccc-cccCCCCcceeEecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeecc
Q 011033          299 RIYGCERLEALPK-GLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGC  376 (495)
Q Consensus       299 ~l~~~~~~~~~~~-~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  376 (495)
                      ++++|..++.++. .+..+++|++|++++ .+..++....+++|++|++++|.. ....+.   .+.++++|+.|++++|
T Consensus       177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~---~~~~l~~L~~L~L~~n  252 (452)
T 3zyi_A          177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHF-PEIRPG---SFHGLSSLKKLWVMNS  252 (452)
T ss_dssp             ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCC-SEECGG---GGTTCTTCCEEECTTS
T ss_pred             eCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcC-cccCcc---cccCccCCCEEEeCCC
Confidence            8888777777765 577788888888888 777777667778888888888873 323333   5777888888888887


Q ss_pred             ccccccchhhhccccccCCCCCCCceeeeccccccccccc-ccccCCCCCeEeccCCC
Q 011033          377 DDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-SIVDLQNLTHLNLVDCP  433 (495)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~  433 (495)
                        .+..++...      +..+++|+.|++++ +.++.++. .+..+++|++|++++|+
T Consensus       253 --~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          253 --QVSLIERNA------FDGLASLVELNLAH-NNLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             --CCCEECTTT------TTTCTTCCEEECCS-SCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             --cCceECHHH------hcCCCCCCEEECCC-CcCCccChHHhccccCCCEEEccCCC
Confidence              555554422      23456888888888 56777765 56778888888888765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.80  E-value=5.3e-20  Score=175.22  Aligned_cols=258  Identities=13%  Similarity=0.110  Sum_probs=166.6

Q ss_pred             cccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC--CCCCCCCcEEEEeCCCCCCccccccccCCCCCccE
Q 011033           52 CRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLET  129 (495)
Q Consensus        52 ~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~  129 (495)
                      ..++.++++.+.....+...+..+++|++|++++| .++.+++  +..+++|++|++++|. +...++ +...  ++|++
T Consensus        10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l--~~L~~   84 (317)
T 3o53_A           10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESL--STLRT   84 (317)
T ss_dssp             TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTC--TTCCE
T ss_pred             CceeEeeccccchhhhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhc--CCCCE
Confidence            34666677765332233334556789999999998 6776663  8889999999999987 444443 4334  88999


Q ss_pred             EecccCccccccccccCCCCccEEEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcc
Q 011033          130 LYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPA  209 (495)
Q Consensus       130 L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  209 (495)
                      |++++| .++.++.   .++|+.|+++++ .++.+  +                                          
T Consensus        85 L~Ls~n-~l~~l~~---~~~L~~L~l~~n-~l~~~--~------------------------------------------  115 (317)
T 3o53_A           85 LDLNNN-YVQELLV---GPSIETLHAANN-NISRV--S------------------------------------------  115 (317)
T ss_dssp             EECCSS-EEEEEEE---CTTCCEEECCSS-CCSEE--E------------------------------------------
T ss_pred             EECcCC-ccccccC---CCCcCEEECCCC-ccCCc--C------------------------------------------
Confidence            999885 3555443   367777777764 33322  1                                          


Q ss_pred             cccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccC-CCCCCccEEEeeCCCCccccCCC
Q 011033          210 TLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGL-HNLGQLQEIEIWECENLVSFPEG  288 (495)
Q Consensus       210 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~-~~l~~L~~L~l~~~~~l~~l~~~  288 (495)
                            ... .++|+.|++++|......+..+..+++|+.|++++|......+..+ ..+++|++|++++| .++.++..
T Consensus       116 ------~~~-~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~  187 (317)
T 3o53_A          116 ------CSR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ  187 (317)
T ss_dssp             ------ECC-CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC
T ss_pred             ------ccc-cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCcccccc
Confidence                  111 1567777777666665555567777888888888754333233444 35788888888887 45555543


Q ss_pred             CCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCC-CCCCccceeEeeccCccchhhhcccccCCCCC
Q 011033          289 GLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED-GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFS  366 (495)
Q Consensus       289 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  366 (495)
                      . .+++|+.|++++|. ++.+|..+..+++|++|++++ .+..++.. ..+++|++|++++|.......+.   .+..++
T Consensus       188 ~-~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~---~~~~~~  262 (317)
T 3o53_A          188 V-VFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD---FFSKNQ  262 (317)
T ss_dssp             C-CCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHH---HHHTCH
T ss_pred             c-ccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHH---HHhccc
Confidence            3 36688888888875 556666677778888888877 66666543 44567777777777644334443   455666


Q ss_pred             ccceEEeecc
Q 011033          367 SLRHLTIEGC  376 (495)
Q Consensus       367 ~L~~L~l~~~  376 (495)
                      +|+.|+++++
T Consensus       263 ~L~~l~l~~~  272 (317)
T 3o53_A          263 RVQTVAKQTV  272 (317)
T ss_dssp             HHHHHHHHHH
T ss_pred             cceEEECCCc
Confidence            6666666654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.79  E-value=1.4e-18  Score=164.57  Aligned_cols=224  Identities=17%  Similarity=0.156  Sum_probs=169.8

Q ss_pred             CCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcc---cccCCCCCCccEEEeeCCCCccccCCCCCCCCC
Q 011033          218 NLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKIL---PSGLHNLGQLQEIEIWECENLVSFPEGGLPCAK  294 (495)
Q Consensus       218 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l---~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~  294 (495)
                      .+++++++|++++|......+..+..+++|++|++++|. +..+   +..+..+++|++|++++| .+..++..+..+++
T Consensus        25 ~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~  102 (306)
T 2z66_A           25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQ  102 (306)
T ss_dssp             CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTT
T ss_pred             CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCC-ccccChhhcCCCCC
Confidence            345789999999887654434457899999999999864 4333   455667899999999998 67777777778899


Q ss_pred             CcEEEecCcccccccc--ccccCCCCcceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccc
Q 011033          295 LSKLRIYGCERLEALP--KGLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLR  369 (495)
Q Consensus       295 L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~  369 (495)
                      |+.|++++|. ++.++  ..+..+++|++|++++ .+......  ..+++|++|++++|.......+.   .+..+++|+
T Consensus       103 L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~  178 (306)
T 2z66_A          103 LEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD---IFTELRNLT  178 (306)
T ss_dssp             CCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS---CCTTCTTCC
T ss_pred             CCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh---HHhhCcCCC
Confidence            9999999986 45454  3788899999999998 66554433  45789999999999743323333   688999999


Q ss_pred             eEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccccc-ccccCCCCCeEeccCCCCCCCCCCCC---Ccc
Q 011033          370 HLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-SIVDLQNLTHLNLVDCPKLKYFPEKG---LPS  445 (495)
Q Consensus       370 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~---~~~  445 (495)
                      +|++++|  .+..++...      +..+++|+.|++++ +.++.++. .+..+++|++|++++|+ +...+...   .++
T Consensus       179 ~L~Ls~n--~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~  248 (306)
T 2z66_A          179 FLDLSQC--QLEQLSPTA------FNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPS  248 (306)
T ss_dssp             EEECTTS--CCCEECTTT------TTTCTTCCEEECTT-SCCSBCCSGGGTTCTTCCEEECTTSC-CCBCSSSSCCCCCT
T ss_pred             EEECCCC--CcCCcCHHH------hcCCCCCCEEECCC-CccCccChhhccCcccCCEeECCCCC-CcccCHHHHHhhhc
Confidence            9999998  666664322      23567999999999 56777765 67889999999999964 66654432   235


Q ss_pred             ccceeeccCCch
Q 011033          446 SLLQLSIYRCPL  457 (495)
Q Consensus       446 ~L~~L~l~~c~~  457 (495)
                      +|++|++++|+.
T Consensus       249 ~L~~L~L~~N~~  260 (306)
T 2z66_A          249 SLAFLNLTQNDF  260 (306)
T ss_dssp             TCCEEECTTCCE
T ss_pred             cCCEEEccCCCe
Confidence            999999999964

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.78  E-value=3.9e-19  Score=179.05  Aligned_cols=107  Identities=14%  Similarity=0.106  Sum_probs=69.7

Q ss_pred             HHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCCCCCcEEEEeCCCCCCccccccc
Q 011033           41 KDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWM  120 (495)
Q Consensus        41 ~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~  120 (495)
                      +..+..+...+++|++|++++|......|..++.+++|++|++++| .++..++++.+++|++|++++|. +..+|..  
T Consensus        23 ~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~~--   98 (487)
T 3oja_A           23 KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLDLESLSTLRTLDLNNNY-VQELLVG--   98 (487)
T ss_dssp             HHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEECTTCTTCCEEECCSSE-EEEEEEC--
T ss_pred             HHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcccccCCCCCEEEecCCc-CCCCCCC--
Confidence            3456666556679999999998443444567888999999999887 55544447778888888888876 4444432  


Q ss_pred             cCCCCCccEEecccCccccccccccCCCCccEEEecc
Q 011033          121 CDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILS  157 (495)
Q Consensus       121 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~  157 (495)
                          ++|+.|++++| .++.++.. .+++|+.|++++
T Consensus        99 ----~~L~~L~L~~N-~l~~~~~~-~l~~L~~L~L~~  129 (487)
T 3oja_A           99 ----PSIETLHAANN-NISRVSCS-RGQGKKNIYLAN  129 (487)
T ss_dssp             ----TTCCEEECCSS-CCCCEEEC-CCSSCEEEECCS
T ss_pred             ----CCcCEEECcCC-cCCCCCcc-ccCCCCEEECCC
Confidence                56777777664 33333332 234555555554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.78  E-value=8.4e-18  Score=157.54  Aligned_cols=201  Identities=21%  Similarity=0.263  Sum_probs=135.0

Q ss_pred             CCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcc-cccCCCCCCccEEEeeCCCCcccc-CCCCCCCCCCc
Q 011033          219 LPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKIL-PSGLHNLGQLQEIEIWECENLVSF-PEGGLPCAKLS  296 (495)
Q Consensus       219 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~  296 (495)
                      +++++++|+++++......+..+..+++|++|++++|. +..+ +..+..+++|++|++++|..++.+ +..+..+++|+
T Consensus        30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~  108 (285)
T 1ozn_A           30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH  108 (285)
T ss_dssp             CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred             CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence            45789999998877666656678888999999998864 4444 667888899999999988656666 45677788899


Q ss_pred             EEEecCccccccccccccCCCCcceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEe
Q 011033          297 KLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTI  373 (495)
Q Consensus       297 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l  373 (495)
                      .|++++|......|..+..+++|++|++++ .+..++..  ..+++|++|++++|. +......   .+.++++|++|++
T Consensus       109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~~~l~~L~~L~l  184 (285)
T 1ozn_A          109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPER---AFRGLHSLDRLLL  184 (285)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTT---TTTTCTTCCEEEC
T ss_pred             EEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHH---HhcCccccCEEEC
Confidence            999988865444456677888888888887 66666543  346677777777775 2222221   4566677777777


Q ss_pred             eccccccccchhhhccccccCCCCCCCceeeeccccccccccc-ccccCCCCCeEeccCCC
Q 011033          374 EGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-SIVDLQNLTHLNLVDCP  433 (495)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~  433 (495)
                      ++|  .+..+....      +..+++|+.|++++ +.++.++. .+..+++|++|++++|+
T Consensus       185 ~~n--~l~~~~~~~------~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          185 HQN--RVAHVHPHA------FRDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             CSS--CCCEECTTT------TTTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             CCC--cccccCHhH------ccCcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccCCC
Confidence            776  444442211      12345666666666 45555553 45666666666666654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.78  E-value=1.4e-21  Score=196.59  Aligned_cols=288  Identities=19%  Similarity=0.170  Sum_probs=161.7

Q ss_pred             cccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCcccc-ccccCCC----CccEEEEeCCCC
Q 011033           14 LLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLP-QSSLSLS----SLREIEIYKCSS   88 (495)
Q Consensus        14 ~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~-~~~~~l~----~L~~L~l~~~~~   88 (495)
                      .+..+++|++|++++| .++......++..+..+    ++|++|++++|......+ .....++    +|++|++++| .
T Consensus        23 ~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~----~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~   96 (461)
T 1z7x_W           23 LLPLLQQCQVVRLDDC-GLTEARCKDISSALRVN----PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-C   96 (461)
T ss_dssp             HHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTC----TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-C
T ss_pred             HHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhC----CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC-C
Confidence            3678999999999996 46644333333456666    999999999985322222 2233455    7999999998 5


Q ss_pred             CCC-----CCC-CCCCCCCcEEEEeCCCCCCcccccccc---CCCCCccEEecccCcccccc-----ccc-cCCCCccEE
Q 011033           89 LVS-----FPE-VALPSKLKIIEIEGCDALKSLPEAWMC---DTNSSLETLYIEHCRTLTYL-----AGV-QLPRSLKRL  153 (495)
Q Consensus        89 l~~-----l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~~-----~~~-~~~~~L~~L  153 (495)
                      ++.     ++. +..+++|++|++++|......+..+..   ...++|++|++++|. ++..     +.. ..+++|+.|
T Consensus        97 i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L  175 (461)
T 1z7x_W           97 LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKEL  175 (461)
T ss_dssp             CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEE
T ss_pred             CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEE
Confidence            653     232 788999999999998832222222211   112579999999974 4432     221 346899999


Q ss_pred             EeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCC
Q 011033          154 DILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPK  233 (495)
Q Consensus       154 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  233 (495)
                      +++++. +....+ ..+.      .......++++.|++++| .++..- ...++..+      .-.++|++|++++|..
T Consensus       176 ~L~~n~-i~~~~~-~~l~------~~l~~~~~~L~~L~L~~n-~l~~~~-~~~l~~~l------~~~~~L~~L~Ls~n~l  239 (461)
T 1z7x_W          176 TVSNND-INEAGV-RVLC------QGLKDSPCQLEALKLESC-GVTSDN-CRDLCGIV------ASKASLRELALGSNKL  239 (461)
T ss_dssp             ECCSSB-CHHHHH-HHHH------HHHHHSCCCCCEEECTTS-CCBTTH-HHHHHHHH------HHCTTCCEEECCSSBC
T ss_pred             ECcCCC-cchHHH-HHHH------HHHhcCCCCceEEEccCC-CCcHHH-HHHHHHHH------HhCCCccEEeccCCcC
Confidence            999864 432210 0010      000001235777777775 232210 00000000      0125677777776654


Q ss_pred             chhh-----hhhcCCCCCCcEEeeeCCCCCCc-----ccccCCCCCCccEEEeeCCCCcccc-----CC-CCCCCCCCcE
Q 011033          234 LESI-----AERLDNNTSLETINISGCENLKI-----LPSGLHNLGQLQEIEIWECENLVSF-----PE-GGLPCAKLSK  297 (495)
Q Consensus       234 ~~~~-----~~~~~~~~~L~~L~l~~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~l~~l-----~~-~~~~~~~L~~  297 (495)
                      .+..     +..+..+++|+.|++++|. +..     ++..+..+++|++|++++|. ++..     .. .....++|+.
T Consensus       240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~  317 (461)
T 1z7x_W          240 GDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLES  317 (461)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCE
T ss_pred             ChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCcccee
Confidence            3321     1223356777777777753 333     44455566777777777763 3321     11 1112346777


Q ss_pred             EEecCcccccc----ccccccCCCCcceeEecc
Q 011033          298 LRIYGCERLEA----LPKGLHNLTSLQQLTIGG  326 (495)
Q Consensus       298 L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~  326 (495)
                      |++++|.....    ++..+..+++|++|++++
T Consensus       318 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~  350 (461)
T 1z7x_W          318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISN  350 (461)
T ss_dssp             EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCS
T ss_pred             eEcCCCCCchHHHHHHHHHHhhCCCccEEEccC
Confidence            77777653222    334445556666666655

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.78  E-value=1e-17  Score=158.68  Aligned_cols=128  Identities=19%  Similarity=0.192  Sum_probs=63.5

Q ss_pred             CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCC-cccccCCCCCCccEEEeeCCCCcccc-CCCCCCCCCCcEE
Q 011033          221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLK-ILPSGLHNLGQLQEIEIWECENLVSF-PEGGLPCAKLSKL  298 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L  298 (495)
                      ++|+.|++++|......+..+..+++|++|++++|.... .+|..+..+++|++|++++| .++.+ +..+..+++|+.|
T Consensus       126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L  204 (306)
T 2z66_A          126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVL  204 (306)
T ss_dssp             TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEE
T ss_pred             cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEE
Confidence            345555555444444444445555666666666543222 24555556666666666665 33333 3345555666666


Q ss_pred             EecCccccccccccccCCCCcceeEecc-ccccccCC--C-CCCccceeEeeccC
Q 011033          299 RIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED--G-LPTNLHSLHIWGNM  349 (495)
Q Consensus       299 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~--~-~~~~L~~L~l~~~~  349 (495)
                      ++++|......+..+..+++|++|++++ .+......  . .+++|++|++++|.
T Consensus       205 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             ECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             ECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            6666543222222445555555555555 43333221  1 12355555555554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.76  E-value=1.1e-17  Score=152.45  Aligned_cols=180  Identities=14%  Similarity=0.095  Sum_probs=114.5

Q ss_pred             cCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEEEecCcccccccc-ccccCCCCcceeEecc-ccccccCCCCCCcc
Q 011033          264 GLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLRIYGCERLEALP-KGLHNLTSLQQLTIGG-ELPSLEEDGLPTNL  340 (495)
Q Consensus       264 ~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L  340 (495)
                      .+.++++|++|++++|..++.++. .+..+++|+.|++++|..++.++ ..+..+++|++|++++ .+..+|....+++|
T Consensus        50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L  129 (239)
T 2xwt_C           50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYST  129 (239)
T ss_dssp             TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBC
T ss_pred             HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcccccccccccc
Confidence            344444555555554432444433 33344455555555422233333 2344555555555555 44444443444555


Q ss_pred             c---eeEeeccCccchhhhcccccCCCCCccc-eEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccccc
Q 011033          341 H---SLHIWGNMEIWKSMIERGRGFHRFSSLR-HLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS  416 (495)
Q Consensus       341 ~---~L~l~~~~~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~  416 (495)
                      +   +|++++|..+......   .+.++++|+ +|++++|  .+..++...      +.. ++|+.|++++++.++.++.
T Consensus       130 ~~L~~L~l~~N~~l~~i~~~---~~~~l~~L~~~L~l~~n--~l~~i~~~~------~~~-~~L~~L~L~~n~~l~~i~~  197 (239)
T 2xwt_C          130 DIFFILEITDNPYMTSIPVN---AFQGLCNETLTLKLYNN--GFTSVQGYA------FNG-TKLDAVYLNKNKYLTVIDK  197 (239)
T ss_dssp             CSEEEEEEESCTTCCEECTT---TTTTTBSSEEEEECCSC--CCCEECTTT------TTT-CEEEEEECTTCTTCCEECT
T ss_pred             ccccEEECCCCcchhhcCcc---cccchhcceeEEEcCCC--CCcccCHhh------cCC-CCCCEEEcCCCCCcccCCH
Confidence            5   8888888434433333   578899999 9999998  777777643      123 6899999999667888875


Q ss_pred             -ccccC-CCCCeEeccCCCCCCCCCCCCCccccceeeccCCch
Q 011033          417 -SIVDL-QNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCPL  457 (495)
Q Consensus       417 -~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~  457 (495)
                       .+..+ ++|++|++++ +.++.+|.. .+++|++|.++++..
T Consensus       198 ~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          198 DAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELIARNTWT  238 (239)
T ss_dssp             TTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEECTTC--
T ss_pred             HHhhccccCCcEEECCC-CccccCChh-HhccCceeeccCccC
Confidence             67888 9999999999 568888876 578999999999864

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.76  E-value=9.7e-18  Score=157.09  Aligned_cols=98  Identities=15%  Similarity=0.175  Sum_probs=57.0

Q ss_pred             cEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCcccc-ccccCCCCccEEEEeCCCCCCCCCC--CCCC
Q 011033           22 RRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLP-QSSLSLSSLREIEIYKCSSLVSFPE--VALP   98 (495)
Q Consensus        22 ~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~   98 (495)
                      ++++.++ .+++.+|.+     +      +++|++|++++| .+..++ ..+..+++|++|++++| .++.+++  +..+
T Consensus        14 ~~~~c~~-~~l~~ip~~-----~------~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l   79 (285)
T 1ozn_A           14 VTTSCPQ-QGLQAVPVG-----I------PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGL   79 (285)
T ss_dssp             CEEECCS-SCCSSCCTT-----C------CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTC
T ss_pred             eEEEcCc-CCcccCCcC-----C------CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCc
Confidence            5666666 566666553     1      166777777776 334444 44667777777777776 4554432  6666


Q ss_pred             CCCcEEEEeCCCCCCcc-ccccccCCCCCccEEecccC
Q 011033           99 SKLKIIEIEGCDALKSL-PEAWMCDTNSSLETLYIEHC  135 (495)
Q Consensus        99 ~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~  135 (495)
                      ++|++|++++|..+..+ +..+...  ++|++|++++|
T Consensus        80 ~~L~~L~l~~n~~l~~~~~~~~~~l--~~L~~L~l~~n  115 (285)
T 1ozn_A           80 ALLEQLDLSDNAQLRSVDPATFHGL--GRLHTLHLDRC  115 (285)
T ss_dssp             TTCCEEECCSCTTCCCCCTTTTTTC--TTCCEEECTTS
T ss_pred             cCCCEEeCCCCCCccccCHHHhcCC--cCCCEEECCCC
Confidence            77777777776534444 3333323  55666666553

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.74  E-value=8.9e-18  Score=159.42  Aligned_cols=249  Identities=17%  Similarity=0.148  Sum_probs=134.8

Q ss_pred             ccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCC-cccccccc-------CCCCccEEEEe
Q 011033           13 ELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGL-VKLPQSSL-------SLSSLREIEIY   84 (495)
Q Consensus        13 ~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l-~~l~~~~~-------~l~~L~~L~l~   84 (495)
                      +.+...++|++|++++ +.+ .+|.+     +..      .|+.|++++|... ..+|..+.       .+++|++|+++
T Consensus        37 ~~~~~~~~L~~l~l~~-n~l-~~p~~-----~~~------~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~  103 (312)
T 1wwl_A           37 ELYGGGRSLEYLLKRV-DTE-ADLGQ-----FTD------IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE  103 (312)
T ss_dssp             EEEEEEEECTTHHHHC-CTT-CCCHH-----HHH------HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEE
T ss_pred             EEEccCCCceeEeecc-ccc-ccHHH-----HHH------HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEcc
Confidence            3456677888888888 456 66653     443      2888889887442 24555444       68899999999


Q ss_pred             CCCCCCCCCC-C--CCCCCCcEEEEeCCCCCCccccccccC---CCCCccEEecccCccccccccc--cCCCCccEEEec
Q 011033           85 KCSSLVSFPE-V--ALPSKLKIIEIEGCDALKSLPEAWMCD---TNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDIL  156 (495)
Q Consensus        85 ~~~~l~~l~~-~--~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~  156 (495)
                      +|.....+|. +  +.+++|++|++++|. +...|..+...   ..++|++|++++|. ++.++..  ..+++|+.|+++
T Consensus       104 ~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls  181 (312)
T 1wwl_A          104 NLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLS  181 (312)
T ss_dssp             EEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECC
T ss_pred             CCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECC
Confidence            9843335665 3  778899999999987 44446544322   11567777777643 4443321  445556666655


Q ss_pred             cCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCch-
Q 011033          157 SCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLE-  235 (495)
Q Consensus       157 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-  235 (495)
                      ++.-.....++..+                                            .... .++|++|++++|.... 
T Consensus       182 ~N~l~~~~~~~~~~--------------------------------------------~~~~-l~~L~~L~L~~N~l~~~  216 (312)
T 1wwl_A          182 DNPELGERGLISAL--------------------------------------------CPLK-FPTLQVLALRNAGMETP  216 (312)
T ss_dssp             SCTTCHHHHHHHHS--------------------------------------------CTTS-CTTCCEEECTTSCCCCH
T ss_pred             CCCcCcchHHHHHH--------------------------------------------Hhcc-CCCCCEEECCCCcCcch
Confidence            54221111000000                                            0001 1455556665554331 


Q ss_pred             -hhh-hhcCCCCCCcEEeeeCCCCCCccc-ccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCcccccccccc
Q 011033          236 -SIA-ERLDNNTSLETINISGCENLKILP-SGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKG  312 (495)
Q Consensus       236 -~~~-~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~  312 (495)
                       .++ ..+..+++|+.|++++|......+ ..+..+++|++|++++| .++.+|..+.  ++|+.|++++|. ++.+|. 
T Consensus       217 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~-l~~~p~-  291 (312)
T 1wwl_A          217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYNR-LDRNPS-  291 (312)
T ss_dssp             HHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSSC-CCSCCC-
T ss_pred             HHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCCC-CCCChh-
Confidence             222 233455666666666643322222 23344566666666665 3445554333  456666666653 344443 


Q ss_pred             ccCCCCcceeEecc
Q 011033          313 LHNLTSLQQLTIGG  326 (495)
Q Consensus       313 l~~l~~L~~L~l~~  326 (495)
                      +..+++|++|++++
T Consensus       292 ~~~l~~L~~L~L~~  305 (312)
T 1wwl_A          292 PDELPQVGNLSLKG  305 (312)
T ss_dssp             TTTSCEEEEEECTT
T ss_pred             HhhCCCCCEEeccC
Confidence            44555555555544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.72  E-value=2.4e-17  Score=166.07  Aligned_cols=213  Identities=15%  Similarity=0.109  Sum_probs=148.3

Q ss_pred             CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEe
Q 011033          221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRI  300 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l  300 (495)
                      ++|+.|++++|......|..+..+++|+.|++++|. +...+. +..+++|++|++++| .++.++.    .++|+.|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCC-cCCCCCC----CCCcCEEEC
Confidence            578888888777666666678888888888888754 333333 777888888888887 5555543    257888888


Q ss_pred             cCccccccccccccCCCCcceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccc
Q 011033          301 YGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCD  377 (495)
Q Consensus       301 ~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  377 (495)
                      ++|. +..++.  ..+++|+.|++++ .+..+++.  +.+++|+.|++++|.. ....+.  .....+++|+.|++++| 
T Consensus       107 ~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~--~l~~~l~~L~~L~Ls~N-  179 (487)
T 3oja_A          107 ANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI-DTVNFA--ELAASSDTLEHLNLQYN-  179 (487)
T ss_dssp             CSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCC-CEEEGG--GGGGGTTTCCEEECTTS-
T ss_pred             cCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCC-CCcChH--HHhhhCCcccEEecCCC-
Confidence            8875 343432  3457788888888 66665443  4467888888888863 323333  12336788888888887 


Q ss_pred             cccccchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCCC-CCccccceeeccCCc
Q 011033          378 DDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEK-GLPSSLLQLSIYRCP  456 (495)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~  456 (495)
                       .+..++...        .+++|+.|++++ +.++.+|..+..+++|+.|++++| .+..+|.. ..+++|+.|++++|+
T Consensus       180 -~l~~~~~~~--------~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          180 -FIYDVKGQV--------VFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG  248 (487)
T ss_dssp             -CCCEEECCC--------CCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred             -ccccccccc--------cCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCC
Confidence             666664433        467888888888 677777777788888888888884 57777764 346788888888886


Q ss_pred             hh
Q 011033          457 LM  458 (495)
Q Consensus       457 ~l  458 (495)
                      ..
T Consensus       249 l~  250 (487)
T 3oja_A          249 FH  250 (487)
T ss_dssp             BC
T ss_pred             Cc
Confidence            54

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.72  E-value=6.7e-18  Score=160.30  Aligned_cols=200  Identities=14%  Similarity=0.083  Sum_probs=123.7

Q ss_pred             CCCCCcEEeeeCCCCCCcccccC--CCCCCccEEEeeCCCCccccCCCCCCC-----CCCcEEEecCccccccccccccC
Q 011033          243 NNTSLETINISGCENLKILPSGL--HNLGQLQEIEIWECENLVSFPEGGLPC-----AKLSKLRIYGCERLEALPKGLHN  315 (495)
Q Consensus       243 ~~~~L~~L~l~~~~~~~~l~~~~--~~l~~L~~L~l~~~~~l~~l~~~~~~~-----~~L~~L~l~~~~~~~~~~~~l~~  315 (495)
                      .+++|++|++++|.....+|..+  ..+++|++|++++| .++..|..+..+     ++|++|++++|......|..+..
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            56677777777755444555544  66677777777776 344444333332     57777777776543333356667


Q ss_pred             CCCcceeEecc-cccc----ccCC--CCCCccceeEeeccCccch-hhhcccccCCCCCccceEEeeccccccccchhhh
Q 011033          316 LTSLQQLTIGG-ELPS----LEED--GLPTNLHSLHIWGNMEIWK-SMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLED  387 (495)
Q Consensus       316 l~~L~~L~l~~-~l~~----~~~~--~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  387 (495)
                      +++|++|++++ .+..    .+..  ..+++|++|++++|..... ....  ..+.++++|++|++++|  .+.......
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~~~~l~~L~~L~Ls~N--~l~~~~~~~  247 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS--ALAAARVQLQGLDLSHN--SLRDAAGAP  247 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH--HHHHTTCCCSEEECTTS--CCCSSCCCS
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHH--HHHhcCCCCCEEECCCC--cCCcccchh
Confidence            77777777776 3221    1112  4567777777777763210 1111  23456778888888887  555533100


Q ss_pred             ccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCCCCCccccceeeccCCc
Q 011033          388 KRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCP  456 (495)
Q Consensus       388 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~  456 (495)
                           .+..+++|+.|++++ +.++.+|..+.  ++|++|++++ +.++.+|....+++|++|++++++
T Consensus       248 -----~~~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~-N~l~~~p~~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          248 -----SCDWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSY-NRLDRNPSPDELPQVGNLSLKGNP  307 (312)
T ss_dssp             -----CCCCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCS-SCCCSCCCTTTSCEEEEEECTTCT
T ss_pred             -----hhhhcCCCCEEECCC-CccChhhhhcc--CCceEEECCC-CCCCCChhHhhCCCCCEEeccCCC
Confidence                 112456888888888 56778876555  7888888888 457777765557888888888886

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.70  E-value=1.6e-16  Score=148.07  Aligned_cols=200  Identities=18%  Similarity=0.160  Sum_probs=130.1

Q ss_pred             CCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcc-cccCCCCCCccEEEeeCCCCccccC-CCCCCCCCC
Q 011033          218 NLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKIL-PSGLHNLGQLQEIEIWECENLVSFP-EGGLPCAKL  295 (495)
Q Consensus       218 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L  295 (495)
                      .+++++++|++++|......+..+..+++|++|++++|. +..+ +..+.++++|++|++++| .++.++ ..+..+++|
T Consensus        25 ~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L  102 (276)
T 2z62_A           25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSL  102 (276)
T ss_dssp             SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTC
T ss_pred             CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccc
Confidence            345679999998887666555578888999999998864 4444 346788889999999888 455544 467778889


Q ss_pred             cEEEecCccccccccccccCCCCcceeEecc-ccccc--cCC-CCCCccceeEeeccCccchhhhcccccCCCCCccc--
Q 011033          296 SKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSL--EED-GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLR--  369 (495)
Q Consensus       296 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~--~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~--  369 (495)
                      +.|++++|......+..+..+++|++|++++ .+..+  +.. ..+++|++|++++|.. ......   .+..+++|+  
T Consensus       103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l-~~~~~~---~~~~l~~L~~l  178 (276)
T 2z62_A          103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCT---DLRVLHQMPLL  178 (276)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC-CEECGG---GGHHHHTCTTC
T ss_pred             cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC-CcCCHH---Hhhhhhhcccc
Confidence            9999988864433333677888888888887 55542  222 4456777777777763 222222   233344444  


Q ss_pred             --eEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccccc-ccccCCCCCeEeccCCC
Q 011033          370 --HLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-SIVDLQNLTHLNLVDCP  433 (495)
Q Consensus       370 --~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~  433 (495)
                        .|++++|  .+..++...       ....+|+.|++++ +.++.+|. .+..+++|++|++++|+
T Consensus       179 ~l~L~ls~n--~l~~~~~~~-------~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          179 NLSLDLSLN--PMNFIQPGA-------FKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             CEEEECCSS--CCCEECTTS-------SCSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             ceeeecCCC--cccccCccc-------cCCCcccEEECCC-CceeecCHhHhcccccccEEEccCCc
Confidence              6777776  555554432       1223677777777 45666665 34667777777777654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.69  E-value=8.5e-16  Score=143.91  Aligned_cols=172  Identities=21%  Similarity=0.181  Sum_probs=107.6

Q ss_pred             CCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEE
Q 011033          219 LPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKL  298 (495)
Q Consensus       219 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L  298 (495)
                      +++.++.|++++|......+..+..+++|+.|++++| .+..++.. ..+++|++|++++| .++.++..+..+++|+.|
T Consensus        29 ~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L  105 (290)
T 1p9a_G           29 LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVL  105 (290)
T ss_dssp             CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEE
T ss_pred             CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEE
Confidence            3467888888877776666667888888888888874 45555443 67788888888887 566777767777788888


Q ss_pred             EecCcccccccc-ccccCCCCcceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEee
Q 011033          299 RIYGCERLEALP-KGLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIE  374 (495)
Q Consensus       299 ~l~~~~~~~~~~-~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  374 (495)
                      ++++|. ++.+| ..+..+++|++|++++ .+..++..  ..+++|+.|++++|. +.....   ..+.++++|+.|+++
T Consensus       106 ~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~---~~~~~l~~L~~L~L~  180 (290)
T 1p9a_G          106 DVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPA---GLLNGLENLDTLLLQ  180 (290)
T ss_dssp             ECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCT---TTTTTCTTCCEEECC
T ss_pred             ECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCH---HHhcCcCCCCEEECC
Confidence            888775 44443 4577777777777777 66665543  234556666666554 221111   134455555555555


Q ss_pred             ccccccccchhhhccccccCCCCCCCceeeecc
Q 011033          375 GCDDDMVSFPLEDKRLGTALPLPASLTSLRIVD  407 (495)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  407 (495)
                      +|  .+..++...       ...++|+.|++++
T Consensus       181 ~N--~l~~ip~~~-------~~~~~L~~l~L~~  204 (290)
T 1p9a_G          181 EN--SLYTIPKGF-------FGSHLLPFAFLHG  204 (290)
T ss_dssp             SS--CCCCCCTTT-------TTTCCCSEEECCS
T ss_pred             CC--cCCccChhh-------cccccCCeEEeCC
Confidence            55  444444432       1223455555554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.69  E-value=4.6e-16  Score=141.63  Aligned_cols=199  Identities=20%  Similarity=0.193  Sum_probs=152.7

Q ss_pred             CCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccc-cCCCCCCccEEEeeCCCCccccCC-CCCCCCCCc
Q 011033          219 LPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPS-GLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLS  296 (495)
Q Consensus       219 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~  296 (495)
                      ++++++.|++++|......+..+..+++|+.|++++|..+..++. .+.++++|++|++++|..++.++. .+..+++|+
T Consensus        29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            557899999998876665555788999999999999765766654 678899999999998336777775 567788999


Q ss_pred             EEEecCccccccccccccCCCCcc---eeEecc--ccccccCC--CCCCccc-eeEeeccCccchhhhcccccCCCCCcc
Q 011033          297 KLRIYGCERLEALPKGLHNLTSLQ---QLTIGG--ELPSLEED--GLPTNLH-SLHIWGNMEIWKSMIERGRGFHRFSSL  368 (495)
Q Consensus       297 ~L~l~~~~~~~~~~~~l~~l~~L~---~L~l~~--~l~~~~~~--~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~l~~L  368 (495)
                      .|++++|. ++.+|. +..+++|+   +|++++  .+..++..  ..+++|+ +|++++|.. . .++.  ..+.. ++|
T Consensus       109 ~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l-~-~i~~--~~~~~-~~L  181 (239)
T 2xwt_C          109 FLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-T-SVQG--YAFNG-TKL  181 (239)
T ss_dssp             EEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC-C-EECT--TTTTT-CEE
T ss_pred             EEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC-c-ccCH--hhcCC-CCC
Confidence            99999986 566876 88888888   999988  67777653  4578999 999999873 3 2222  23444 799


Q ss_pred             ceEEeeccccccccchhhhccccccCCCC-CCCceeeecccccccccccccccCCCCCeEeccCCCC
Q 011033          369 RHLTIEGCDDDMVSFPLEDKRLGTALPLP-ASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPK  434 (495)
Q Consensus       369 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~  434 (495)
                      ++|++++| ..+..++...      +... ++|+.|++++ +.++.+|..  .+++|+.|+++++..
T Consensus       182 ~~L~L~~n-~~l~~i~~~~------~~~l~~~L~~L~l~~-N~l~~l~~~--~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          182 DAVYLNKN-KYLTVIDKDA------FGGVYSGPSLLDVSQ-TSVTALPSK--GLEHLKELIARNTWT  238 (239)
T ss_dssp             EEEECTTC-TTCCEECTTT------TTTCSBCCSEEECTT-CCCCCCCCT--TCTTCSEEECTTC--
T ss_pred             CEEEcCCC-CCcccCCHHH------hhccccCCcEEECCC-CccccCChh--HhccCceeeccCccC
Confidence            99999998 2266665532      2345 7999999999 788888854  789999999998764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.68  E-value=9.8e-16  Score=143.49  Aligned_cols=128  Identities=16%  Similarity=0.090  Sum_probs=90.4

Q ss_pred             ccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCC
Q 011033           13 ELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSF   92 (495)
Q Consensus        13 ~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l   92 (495)
                      ..++.+++++++++++ ++++.+|.+     +      +++++.|++++|......+..+..+++|++|++++| .++.+
T Consensus         4 C~~~~l~~l~~l~~~~-~~l~~ip~~-----~------~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~   70 (290)
T 1p9a_G            4 CEVSKVASHLEVNCDK-RNLTALPPD-----L------PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKL   70 (290)
T ss_dssp             SEEECSTTCCEEECTT-SCCSSCCSC-----C------CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEE
T ss_pred             ccccccCCccEEECCC-CCCCcCCCC-----C------CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcc
Confidence            3467888999999999 678888775     2      278999999998543444567889999999999997 67777


Q ss_pred             CCCCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc--cCCCCccEEEecc
Q 011033           93 PEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILS  157 (495)
Q Consensus        93 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~  157 (495)
                      +..+.+++|++|++++|. +..+|..+...  ++|+.|++++| .++.++..  ..+++|+.|++++
T Consensus        71 ~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l--~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~  133 (290)
T 1p9a_G           71 QVDGTLPVLGTLDLSHNQ-LQSLPLLGQTL--PALTVLDVSFN-RLTSLPLGALRGLGELQELYLKG  133 (290)
T ss_dssp             ECCSCCTTCCEEECCSSC-CSSCCCCTTTC--TTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTT
T ss_pred             cCCCCCCcCCEEECCCCc-CCcCchhhccC--CCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCC
Confidence            767788889999998877 56677655444  67777777764 34444321  3334444444444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.68  E-value=1.8e-15  Score=140.32  Aligned_cols=194  Identities=21%  Similarity=0.283  Sum_probs=116.3

Q ss_pred             CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCccc-ccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEE
Q 011033          221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILP-SGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKL  298 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L  298 (495)
                      ...+.++++++. ++.+|..+.  ++++.|++++|. +..++ ..+.++++|++|++++| .++.++. .+..+++|+.|
T Consensus        16 ~~~~~l~~~~~~-l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L   90 (270)
T 2o6q_A           16 NNKNSVDCSSKK-LTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETL   90 (270)
T ss_dssp             TTTTEEECTTSC-CSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEE
T ss_pred             CCCCEEEccCCC-CCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEE
Confidence            356778877544 445555332  678888888754 44454 46778888888888887 5566665 34567788888


Q ss_pred             EecCcccccccc-ccccCCCCcceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEee
Q 011033          299 RIYGCERLEALP-KGLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIE  374 (495)
Q Consensus       299 ~l~~~~~~~~~~-~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  374 (495)
                      ++++|. ++.+| ..+..+++|++|++++ .+..++..  ..+++|++|++++|. +.....   ..+.++++|++|+++
T Consensus        91 ~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~---~~~~~l~~L~~L~L~  165 (270)
T 2o6q_A           91 WVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPK---GVFDKLTSLKELRLY  165 (270)
T ss_dssp             ECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT---TTTTTCTTCCEEECC
T ss_pred             ECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCH---hHccCCcccceeEec
Confidence            888876 44443 3567777888888777 66655543  345666666666664 221211   135556666666666


Q ss_pred             ccccccccchhhhccccccCCCCCCCceeeeccccccccccc-ccccCCCCCeEeccCCC
Q 011033          375 GCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-SIVDLQNLTHLNLVDCP  433 (495)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~  433 (495)
                      +|  .+..++...      +..+++|+.|++++ +.++.++. .+..+++|+.|++++|+
T Consensus       166 ~n--~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          166 NN--QLKRVPEGA------FDKLTELKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             SS--CCSCCCTTT------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CC--cCcEeChhH------hccCCCcCEEECCC-CcCCcCCHHHhccccCCCEEEecCCC
Confidence            65  444444321      12344566666666 34555544 34555666666666544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.68  E-value=4.4e-16  Score=145.08  Aligned_cols=205  Identities=22%  Similarity=0.248  Sum_probs=155.6

Q ss_pred             hhhhhhcCCCCCCcEEeeeCCCCCCccc-ccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEEEecCcccccccccc
Q 011033          235 ESIAERLDNNTSLETINISGCENLKILP-SGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLRIYGCERLEALPKG  312 (495)
Q Consensus       235 ~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~  312 (495)
                      ..+|..+  .++|++|++++|. +..++ ..+.++++|++|++++| .++.++. .+..+++|+.|++++|......+..
T Consensus        20 ~~ip~~l--~~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (276)
T 2z62_A           20 YKIPDNL--PFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA   95 (276)
T ss_dssp             SSCCSSS--CTTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred             cccCCCC--CCCccEEECCCCc-ccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhh
Confidence            3455433  2589999999864 55554 47889999999999998 5666654 6778899999999999755444567


Q ss_pred             ccCCCCcceeEecc-ccccccC--CCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhcc
Q 011033          313 LHNLTSLQQLTIGG-ELPSLEE--DGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKR  389 (495)
Q Consensus       313 l~~l~~L~~L~l~~-~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  389 (495)
                      +..+++|++|++++ .+..++.  ...+++|++|++++|......++.   .+.++++|++|++++|  .+..++...  
T Consensus        96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~---~~~~l~~L~~L~Ls~N--~l~~~~~~~--  168 (276)
T 2z62_A           96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE---YFSNLTNLEHLDLSSN--KIQSIYCTD--  168 (276)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG---GGGGCTTCCEEECCSS--CCCEECGGG--
T ss_pred             hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCch---hhccCCCCCEEECCCC--CCCcCCHHH--
Confidence            89999999999999 7776655  356789999999999843322333   6788999999999998  666654422  


Q ss_pred             ccccCCCCCCCc----eeeecccccccccccccccCCCCCeEeccCCCCCCCCCCCC--CccccceeeccCCc
Q 011033          390 LGTALPLPASLT----SLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKG--LPSSLLQLSIYRCP  456 (495)
Q Consensus       390 ~~~~~~~~~~L~----~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~c~  456 (495)
                          +..+++|+    .|++++ +.++.++.......+|++|++++| .++.++...  .+++|++|++++||
T Consensus       169 ----~~~l~~L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          169 ----LRVLHQMPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             ----GHHHHTCTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             ----hhhhhhccccceeeecCC-CcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence                11233455    899999 778888776556669999999995 488888753  37999999999664

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.68  E-value=3.8e-16  Score=147.72  Aligned_cols=192  Identities=17%  Similarity=0.169  Sum_probs=113.0

Q ss_pred             HhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCCCCCcEEEEeCCCCCCccccccccCC
Q 011033           44 QQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDT  123 (495)
Q Consensus        44 ~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  123 (495)
                      +..+    ++|++|++++| .+..++ .+..+++|++|++++| .++.++.+..+++|++|++++|. +..++ .+... 
T Consensus        37 ~~~l----~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l-  106 (308)
T 1h6u_A           37 QADL----DGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDN-QITDLAPLKNLTKITELELSGNP-LKNVS-AIAGL-  106 (308)
T ss_dssp             HHHH----HTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCCSCCEEECCSCC-CSCCG-GGTTC-
T ss_pred             HHHc----CCcCEEEeeCC-CccCch-hhhccCCCCEEEccCC-cCCCChhHccCCCCCEEEccCCc-CCCch-hhcCC-
Confidence            4556    77888888876 456666 3777788888888777 56666667777788888888776 44444 23333 


Q ss_pred             CCCccEEecccCccccccccccCCCCccEEEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCccccc
Q 011033          124 NSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFS  203 (495)
Q Consensus       124 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  203 (495)
                       ++|++|++++| .++.++....+++|+.|+++++ .++.+  +.                             +..   
T Consensus       107 -~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n-~l~~~--~~-----------------------------l~~---  149 (308)
T 1h6u_A          107 -QSIKTLDLTST-QITDVTPLAGLSNLQVLYLDLN-QITNI--SP-----------------------------LAG---  149 (308)
T ss_dssp             -TTCCEEECTTS-CCCCCGGGTTCTTCCEEECCSS-CCCCC--GG-----------------------------GGG---
T ss_pred             -CCCCEEECCCC-CCCCchhhcCCCCCCEEECCCC-ccCcC--cc-----------------------------ccC---
Confidence             67777777774 3555554555566666666654 23222  10                             000   


Q ss_pred             CCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCcc
Q 011033          204 QNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLV  283 (495)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~  283 (495)
                                      .++|+.|++++|.... ++. +..+++|+.|++++| .+..++. +..+++|++|++++| .+.
T Consensus       150 ----------------l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~N-~l~  208 (308)
T 1h6u_A          150 ----------------LTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNN-QIS  208 (308)
T ss_dssp             ----------------CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTS-CCC
T ss_pred             ----------------CCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCC-ccCcChh-hcCCCCCCEEEccCC-ccC
Confidence                            1455556665554332 222 556666666666664 3344433 556666666666666 344


Q ss_pred             ccCCCCCCCCCCcEEEecCcc
Q 011033          284 SFPEGGLPCAKLSKLRIYGCE  304 (495)
Q Consensus       284 ~l~~~~~~~~~L~~L~l~~~~  304 (495)
                      .++. +..+++|+.|++++|+
T Consensus       209 ~~~~-l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          209 DVSP-LANTSNLFIVTLTNQT  228 (308)
T ss_dssp             BCGG-GTTCTTCCEEEEEEEE
T ss_pred             cccc-ccCCCCCCEEEccCCe
Confidence            4442 4455666666666654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.68  E-value=2.3e-16  Score=146.61  Aligned_cols=224  Identities=14%  Similarity=0.159  Sum_probs=119.7

Q ss_pred             cccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCC
Q 011033           18 ICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVAL   97 (495)
Q Consensus        18 ~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~   97 (495)
                      +..+..+++.+ ..+.++..      +..+    ++|+.|++++| .+..++. +..+++|++|++++| .+..++.+..
T Consensus        18 ~~~l~~l~l~~-~~~~~~~~------~~~l----~~L~~L~l~~~-~i~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~   83 (272)
T 3rfs_A           18 FAETIKANLKK-KSVTDAVT------QNEL----NSIDQIIANNS-DIKSVQG-IQYLPNVRYLALGGN-KLHDISALKE   83 (272)
T ss_dssp             HHHHHHHHHTC-SCTTSEEC------HHHH----TTCCEEECTTS-CCCCCTT-GGGCTTCCEEECTTS-CCCCCGGGTT
T ss_pred             HHHHHHHHhcC-cccccccc------cccc----cceeeeeeCCC-Ccccccc-cccCCCCcEEECCCC-CCCCchhhcC
Confidence            44555556665 34444333      5566    77777777776 4455543 667777777777776 5665656777


Q ss_pred             CCCCcEEEEeCCCCCCccccc-cccCCCCCccEEecccCccccccccc--cCCCCccEEEeccCCCccccccccccccCC
Q 011033           98 PSKLKIIEIEGCDALKSLPEA-WMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTVEEGIQSSS  174 (495)
Q Consensus        98 ~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  174 (495)
                      +++|++|++++|. +..++.. +...  ++|++|++++| .++.++..  ..+++|+.|+++++ .++.+  +...    
T Consensus        84 l~~L~~L~L~~n~-l~~~~~~~~~~l--~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~--~~~~----  152 (272)
T 3rfs_A           84 LTNLTYLILTGNQ-LQSLPNGVFDKL--TNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHN-QLQSL--PKGV----  152 (272)
T ss_dssp             CTTCCEEECTTSC-CCCCCTTTTTTC--TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCC--CTTT----
T ss_pred             CCCCCEEECCCCc-cCccChhHhcCC--cCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCC-ccCcc--CHHH----
Confidence            7777777777776 4444433 3333  66777777764 34444332  34455555555553 23222  1100    


Q ss_pred             CCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeC
Q 011033          175 SSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISG  254 (495)
Q Consensus       175 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  254 (495)
                                             +                  . -.++|+.|++++|......+..+..+++|+.|++++
T Consensus       153 -----------------------~------------------~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  190 (272)
T 3rfs_A          153 -----------------------F------------------D-KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ  190 (272)
T ss_dssp             -----------------------T------------------T-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             -----------------------h------------------c-cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC
Confidence                                   0                  0 014455555555544433333455566666666666


Q ss_pred             CCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccC
Q 011033          255 CENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHN  315 (495)
Q Consensus       255 ~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  315 (495)
                      |......+..+..+++|+.|++++|+..       +.|++++.+++..|.....+|.+++.
T Consensus       191 N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~  244 (272)
T 3rfs_A          191 NQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGS  244 (272)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred             CcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccc
Confidence            4322222333555666666666665321       23445555555555544455544433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.67  E-value=3.2e-15  Score=138.67  Aligned_cols=195  Identities=21%  Similarity=0.265  Sum_probs=149.2

Q ss_pred             ccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccc-c
Q 011033          186 LLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPS-G  264 (495)
Q Consensus       186 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~  264 (495)
                      ..+.+++++ ..++.+             + ..+++++++|++++|......+..+..+++|++|++++| .+..++. .
T Consensus        17 ~~~~l~~~~-~~l~~i-------------p-~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~   80 (270)
T 2o6q_A           17 NKNSVDCSS-KKLTAI-------------P-SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGI   80 (270)
T ss_dssp             TTTEEECTT-SCCSSC-------------C-SCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTT
T ss_pred             CCCEEEccC-CCCCcc-------------C-CCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhh
Confidence            355666665 445544             2 234578999999988766655668999999999999985 4556654 4


Q ss_pred             CCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCC--CCCCcc
Q 011033          265 LHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED--GLPTNL  340 (495)
Q Consensus       265 ~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L  340 (495)
                      +..+++|++|++++| .++.++. .+..+++|+.|++++|......+..+..+++|++|++++ .+..++..  ..+++|
T Consensus        81 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  159 (270)
T 2o6q_A           81 FKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL  159 (270)
T ss_dssp             TSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             hcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc
Confidence            578999999999998 5666665 567789999999999875444445678999999999999 88887764  567999


Q ss_pred             ceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeecccc
Q 011033          341 HSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFP  409 (495)
Q Consensus       341 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  409 (495)
                      ++|++++|.. ......   .+.++++|++|++++|  .+..++...      +..+++|+.|++++++
T Consensus       160 ~~L~L~~n~l-~~~~~~---~~~~l~~L~~L~L~~N--~l~~~~~~~------~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          160 KELRLYNNQL-KRVPEG---AFDKLTELKTLKLDNN--QLKRVPEGA------FDSLEKLKMLQLQENP  216 (270)
T ss_dssp             CEEECCSSCC-SCCCTT---TTTTCTTCCEEECCSS--CCSCCCTTT------TTTCTTCCEEECCSSC
T ss_pred             ceeEecCCcC-cEeChh---HhccCCCcCEEECCCC--cCCcCCHHH------hccccCCCEEEecCCC
Confidence            9999999973 323322   5788999999999998  777776632      2356799999999854

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.67  E-value=5.6e-16  Score=146.59  Aligned_cols=193  Identities=16%  Similarity=0.181  Sum_probs=134.7

Q ss_pred             CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEe
Q 011033          221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRI  300 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l  300 (495)
                      ++|++|+++++... .++ .+..+++|+.|++++| .+..++. +..+++|++|++++| .++.++ .+..+++|+.|++
T Consensus        41 ~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l  114 (308)
T 1h6u_A           41 DGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDL  114 (308)
T ss_dssp             HTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEEC
T ss_pred             CCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEEC
Confidence            67888888876543 344 4677888888888875 4555655 778888888888887 455554 4556778888888


Q ss_pred             cCccccccccccccCCCCcceeEecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccc
Q 011033          301 YGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDD  379 (495)
Q Consensus       301 ~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  379 (495)
                      ++|. ++.++. +..+++|++|++++ .+..++....+++|++|++++|.. ... .    .+.++++|+.|++++|  .
T Consensus       115 ~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l-~~~-~----~l~~l~~L~~L~l~~n--~  184 (308)
T 1h6u_A          115 TSTQ-ITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQV-SDL-T----PLANLSKLTTLKADDN--K  184 (308)
T ss_dssp             TTSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCC-CCC-G----GGTTCTTCCEEECCSS--C
T ss_pred             CCCC-CCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcC-CCC-h----hhcCCCCCCEEECCCC--c
Confidence            8875 555653 77888888888888 776666656677888888888763 221 1    2567778888888887  5


Q ss_pred             cccchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCC
Q 011033          380 MVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPE  440 (495)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~  440 (495)
                      +..++.-.        .+++|+.|++++ +.++.++ .+..+++|++|++++|+ ++..|.
T Consensus       185 l~~~~~l~--------~l~~L~~L~L~~-N~l~~~~-~l~~l~~L~~L~l~~N~-i~~~~~  234 (308)
T 1h6u_A          185 ISDISPLA--------SLPNLIEVHLKN-NQISDVS-PLANTSNLFIVTLTNQT-ITNQPV  234 (308)
T ss_dssp             CCCCGGGG--------GCTTCCEEECTT-SCCCBCG-GGTTCTTCCEEEEEEEE-EECCCE
T ss_pred             cCcChhhc--------CCCCCCEEEccC-CccCccc-cccCCCCCCEEEccCCe-eecCCe
Confidence            66555422        456788888888 5666666 36777888888888754 555444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.67  E-value=3.5e-16  Score=148.31  Aligned_cols=225  Identities=12%  Similarity=0.034  Sum_probs=139.9

Q ss_pred             CccEEEeecCCCchhh-hh--hcCCCCCCcEEeeeCCCCCCcccccC--CCCCCccEEEeeCCCCccccC----CCCCCC
Q 011033          222 SLKSLFVWYCPKLESI-AE--RLDNNTSLETINISGCENLKILPSGL--HNLGQLQEIEIWECENLVSFP----EGGLPC  292 (495)
Q Consensus       222 ~L~~L~l~~~~~~~~~-~~--~~~~~~~L~~L~l~~~~~~~~l~~~~--~~l~~L~~L~l~~~~~l~~l~----~~~~~~  292 (495)
                      .++.+.+.++...... ..  .+..+++|++|++++|......|..+  ..+++|++|++++|..-...+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            3566666655433211 11  12234567888887765555555555  677788888888774332222    122356


Q ss_pred             CCCcEEEecCccccccccccccCCCCcceeEecc-cccc---ccCC---CCCCccceeEeeccCccchhhhcccccCCCC
Q 011033          293 AKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPS---LEED---GLPTNLHSLHIWGNMEIWKSMIERGRGFHRF  365 (495)
Q Consensus       293 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~---~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l  365 (495)
                      ++|+.|++++|......+..+..+++|++|++++ .+..   ++..   +.+++|++|++++|.. +.........+.++
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAG  223 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHT
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcC
Confidence            6788888887765444445677778888888877 4332   2211   3567888888888863 21111000124677


Q ss_pred             CccceEEeeccccccccc-hhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCCCCCc
Q 011033          366 SSLRHLTIEGCDDDMVSF-PLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLP  444 (495)
Q Consensus       366 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~  444 (495)
                      ++|++|++++|  .+... |....    ....+++|++|++++ +.++.+|..+.  ++|++|++++| .++.+|....+
T Consensus       224 ~~L~~L~Ls~N--~l~~~~p~~~~----~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~l  293 (310)
T 4glp_A          224 VQPHSLDLSHN--SLRATVNPSAP----RCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSSN-RLNRAPQPDEL  293 (310)
T ss_dssp             CCCSSEECTTS--CCCCCCCSCCS----SCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCSC-CCCSCCCTTSC
T ss_pred             CCCCEEECCCC--CCCccchhhHH----hccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCCC-cCCCCchhhhC
Confidence            88899999888  55554 33221    112246899999988 67778887554  78999999984 58877665567


Q ss_pred             cccceeeccCCch
Q 011033          445 SSLLQLSIYRCPL  457 (495)
Q Consensus       445 ~~L~~L~l~~c~~  457 (495)
                      ++|++|++++|+.
T Consensus       294 ~~L~~L~L~~N~l  306 (310)
T 4glp_A          294 PEVDNLTLDGNPF  306 (310)
T ss_dssp             CCCSCEECSSTTT
T ss_pred             CCccEEECcCCCC
Confidence            8899999988863

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.66  E-value=4.8e-15  Score=142.94  Aligned_cols=222  Identities=20%  Similarity=0.192  Sum_probs=161.3

Q ss_pred             CCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCccc-ccCCCCCCccEEEeeCCCCccccCC-CCCCCCCC
Q 011033          218 NLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILP-SGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKL  295 (495)
Q Consensus       218 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L  295 (495)
                      .+++++++|++++|......+.+|..+++|++|++++|...+.++ ..+.++++++.+....+..+..++. .+..+++|
T Consensus        27 ~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L  106 (350)
T 4ay9_X           27 DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL  106 (350)
T ss_dssp             TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred             CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence            345789999999876554444578899999999999977666665 4577888887765554446777754 66778899


Q ss_pred             cEEEecCccccccccc-cccCCCCcceeEecc--ccccccCC---CCCCccceeEeeccCccchhhhcccccCCCCCccc
Q 011033          296 SKLRIYGCERLEALPK-GLHNLTSLQQLTIGG--ELPSLEED---GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLR  369 (495)
Q Consensus       296 ~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~--~l~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~  369 (495)
                      +.|++++|. +..+|. .+....++..+++.+  .+..++..   +....++.|++++|.. .. ++.   ......+|+
T Consensus       107 ~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i-~~-i~~---~~f~~~~L~  180 (350)
T 4ay9_X          107 QYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI-QE-IHN---SAFNGTQLD  180 (350)
T ss_dssp             CEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC-CE-ECT---TSSTTEEEE
T ss_pred             ccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc-cC-CCh---hhccccchh
Confidence            999999886 444443 455666777888866  66666553   2345788899999873 32 222   344556899


Q ss_pred             eEEeeccccccccchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCCCCCccccce
Q 011033          370 HLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQ  449 (495)
Q Consensus       370 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~  449 (495)
                      ++++.++ ..+..++.+.      +..+++|+.|++++ +.++.+|.  ..+.+|+.|.+.++++++.+|....+++|+.
T Consensus       181 ~l~l~~~-n~l~~i~~~~------f~~l~~L~~LdLs~-N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~  250 (350)
T 4ay9_X          181 ELNLSDN-NNLEELPNDV------FHGASGPVILDISR-TRIHSLPS--YGLENLKKLRARSTYNLKKLPTLEKLVALME  250 (350)
T ss_dssp             EEECTTC-TTCCCCCTTT------TTTEECCSEEECTT-SCCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCE
T ss_pred             HHhhccC-CcccCCCHHH------hccCcccchhhcCC-CCcCccCh--hhhccchHhhhccCCCcCcCCCchhCcChhh
Confidence            9999864 3788777643      34567899999999 68898885  3477888888888899999998666789999


Q ss_pred             eeccCC
Q 011033          450 LSIYRC  455 (495)
Q Consensus       450 L~l~~c  455 (495)
                      +++.+.
T Consensus       251 l~l~~~  256 (350)
T 4ay9_X          251 ASLTYP  256 (350)
T ss_dssp             EECSCH
T ss_pred             CcCCCC
Confidence            988764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.65  E-value=5.2e-16  Score=147.12  Aligned_cols=198  Identities=17%  Similarity=0.139  Sum_probs=140.8

Q ss_pred             CCccEEEeecCCCchhhhhhc--CCCCCCcEEeeeCCCCCCccc----ccCCCCCCccEEEeeCCCCccccC-CCCCCCC
Q 011033          221 PSLKSLFVWYCPKLESIAERL--DNNTSLETINISGCENLKILP----SGLHNLGQLQEIEIWECENLVSFP-EGGLPCA  293 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~l~----~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~  293 (495)
                      ++|++|++++|......|..+  ..+++|++|++++|......+    ..+..+++|++|++++|. +..++ ..+..++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~  169 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFP  169 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCC
Confidence            458888888887777777666  778888888888865443222    234467888888888884 44444 4666778


Q ss_pred             CCcEEEecCcccccc--cc--ccccCCCCcceeEecc-ccccccCC-----CCCCccceeEeeccCccchhhhcccccCC
Q 011033          294 KLSKLRIYGCERLEA--LP--KGLHNLTSLQQLTIGG-ELPSLEED-----GLPTNLHSLHIWGNMEIWKSMIERGRGFH  363 (495)
Q Consensus       294 ~L~~L~l~~~~~~~~--~~--~~l~~l~~L~~L~l~~-~l~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  363 (495)
                      +|+.|++++|.....  ++  ..+..+++|++|++++ .+..++..     ..+++|++|++++|.. ....+.....+.
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l-~~~~p~~~~~~~  248 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSL-RATVNPSAPRCM  248 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCC-CCCCCSCCSSCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCC-CccchhhHHhcc
Confidence            888888888864432  22  2346788888888888 66655431     3457899999999873 333232111233


Q ss_pred             CCCccceEEeeccccccccchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCC
Q 011033          364 RFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCP  433 (495)
Q Consensus       364 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~  433 (495)
                      .+++|++|++++|  .+..++..         .+++|+.|++++ +.++.+|. +..+++|++|++++|+
T Consensus       249 ~~~~L~~L~Ls~N--~l~~lp~~---------~~~~L~~L~Ls~-N~l~~~~~-~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          249 WSSALNSLNLSFA--GLEQVPKG---------LPAKLRVLDLSS-NRLNRAPQ-PDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CCTTCCCEECCSS--CCCSCCSC---------CCSCCSCEECCS-CCCCSCCC-TTSCCCCSCEECSSTT
T ss_pred             CcCcCCEEECCCC--CCCchhhh---------hcCCCCEEECCC-CcCCCCch-hhhCCCccEEECcCCC
Confidence            3479999999998  77777764         347999999999 78888874 7889999999999965

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.65  E-value=4.1e-15  Score=143.39  Aligned_cols=195  Identities=21%  Similarity=0.208  Sum_probs=147.8

Q ss_pred             CCccEEEeecCCCchhhhh-hcCCCCCCcEEeeeCCCCCCcc-cccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcE
Q 011033          221 PSLKSLFVWYCPKLESIAE-RLDNNTSLETINISGCENLKIL-PSGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSK  297 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~  297 (495)
                      ++|++|++++|...+.++. +|.+++++.++.+.+++.+..+ +..+..+++|++|++++| .+..++. .+....++..
T Consensus        54 ~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~  132 (350)
T 4ay9_X           54 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVL  132 (350)
T ss_dssp             TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEE
T ss_pred             CCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccc-ccccCCchhhcccchhhh
Confidence            6788888888877666554 5677888877666555666666 456788889999999888 5565554 3445557788


Q ss_pred             EEecCccccccccc-cccCC-CCcceeEecc-ccccccCC-CCCCccceeEeeccCccchhhhcccccCCCCCccceEEe
Q 011033          298 LRIYGCERLEALPK-GLHNL-TSLQQLTIGG-ELPSLEED-GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTI  373 (495)
Q Consensus       298 L~l~~~~~~~~~~~-~l~~l-~~L~~L~l~~-~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l  373 (495)
                      +++.++..+..++. .+..+ ..++.|++++ .++.++.. ....+|+++++.++..+......   .+.++++|+.|++
T Consensus       133 l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~---~f~~l~~L~~LdL  209 (350)
T 4ay9_X          133 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPND---VFHGASGPVILDI  209 (350)
T ss_dssp             EEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTT---TTTTEECCSEEEC
T ss_pred             hhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHH---HhccCcccchhhc
Confidence            88887777777764 44554 4688888888 78777665 34568899999877666644433   6789999999999


Q ss_pred             eccccccccchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccC
Q 011033          374 EGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVD  431 (495)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  431 (495)
                      ++|  .+..++..         .+.+|+.|.+.++.+++.+| .+..+++|+.+++.+
T Consensus       210 s~N--~l~~lp~~---------~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          210 SRT--RIHSLPSY---------GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY  255 (350)
T ss_dssp             TTS--CCCCCCSS---------SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred             CCC--CcCccChh---------hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence            998  88888874         35789999999999999999 688999999999875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.63  E-value=6.7e-17  Score=155.21  Aligned_cols=218  Identities=15%  Similarity=0.148  Sum_probs=118.2

Q ss_pred             ccEEEeecCCCchhhhhhcCCC--CCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCcc-c-cCCCCCCCCCCcEE
Q 011033          223 LKSLFVWYCPKLESIAERLDNN--TSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLV-S-FPEGGLPCAKLSKL  298 (495)
Q Consensus       223 L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~-~-l~~~~~~~~~L~~L  298 (495)
                      +++++++++...   +..+..+  ++++.|++.++. +...+..+..+++|++|++++|. +. . ++..+..+++|+.|
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCE-ECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCcc-ccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEE
Confidence            556666654433   2223333  566666666643 33333334556677777776663 33 2 44445556677777


Q ss_pred             EecCccccccccccccCCCCcceeEecc--cccc--ccC-CCCCCccceeEeeccCccchh-hhcccccCCCCC-ccceE
Q 011033          299 RIYGCERLEALPKGLHNLTSLQQLTIGG--ELPS--LEE-DGLPTNLHSLHIWGNMEIWKS-MIERGRGFHRFS-SLRHL  371 (495)
Q Consensus       299 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~--~l~~--~~~-~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~l~-~L~~L  371 (495)
                      ++++|......+..+..+++|++|++++  .+..  ++. ...+++|++|++++|..+.+. ++.   .+..++ +|++|
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~---~~~~l~~~L~~L  200 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV---AVAHVSETITQL  200 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH---HHHHSCTTCCEE
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH---HHHhcccCCCEE
Confidence            7776653334455566667777777766  2332  222 234566777777777334432 222   456666 77777


Q ss_pred             Eeecccccc--ccchhhhccccccCCCCCCCceeeeccccccc-ccccccccCCCCCeEeccCCCCCCCCC--CCCCccc
Q 011033          372 TIEGCDDDM--VSFPLEDKRLGTALPLPASLTSLRIVDFPNLE-RLSSSIVDLQNLTHLNLVDCPKLKYFP--EKGLPSS  446 (495)
Q Consensus       372 ~l~~~~~~~--~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~~~~  446 (495)
                      ++++|...+  ..++...       ..+++|+.|++++|..++ ..+..+..+++|++|++++|..+....  ....+++
T Consensus       201 ~l~~~~~~~~~~~l~~~~-------~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~  273 (336)
T 2ast_B          201 NLSGYRKNLQKSDLSTLV-------RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT  273 (336)
T ss_dssp             ECCSCGGGSCHHHHHHHH-------HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             EeCCCcccCCHHHHHHHH-------hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence            777762111  2233222       134577777777765444 334456667777777777765333211  1122567


Q ss_pred             cceeeccCC
Q 011033          447 LLQLSIYRC  455 (495)
Q Consensus       447 L~~L~l~~c  455 (495)
                      |++|++++|
T Consensus       274 L~~L~l~~~  282 (336)
T 2ast_B          274 LKTLQVFGI  282 (336)
T ss_dssp             CCEEECTTS
T ss_pred             CCEEeccCc
Confidence            777777777

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.58  E-value=2e-14  Score=133.42  Aligned_cols=147  Identities=25%  Similarity=0.307  Sum_probs=67.3

Q ss_pred             CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcc-cccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEE
Q 011033          221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKIL-PSGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKL  298 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L  298 (495)
                      ++|++|++++|.... + ..+..+++|++|++++|. +..+ +..+..+++|++|++++| .++.++. .+..+++|+.|
T Consensus        63 ~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  138 (272)
T 3rfs_A           63 PNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYL  138 (272)
T ss_dssp             TTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEE
Confidence            455555555544332 2 234555555555555532 2233 223455555555555555 3333333 23445555555


Q ss_pred             EecCcccccccc-ccccCCCCcceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEee
Q 011033          299 RIYGCERLEALP-KGLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIE  374 (495)
Q Consensus       299 ~l~~~~~~~~~~-~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  374 (495)
                      ++++|. ++.++ ..+..+++|++|++++ .+..++..  ..+++|++|++++|. +....+.   .+.++++|+.|+++
T Consensus       139 ~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~---~~~~l~~L~~L~l~  213 (272)
T 3rfs_A          139 NLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDG---VFDRLTSLQYIWLH  213 (272)
T ss_dssp             ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTT---TTTTCTTCCEEECC
T ss_pred             ECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHH---HHhCCcCCCEEEcc
Confidence            555553 22332 2344555555555555 44444332  234455555555544 2211111   34444555555555


Q ss_pred             cc
Q 011033          375 GC  376 (495)
Q Consensus       375 ~~  376 (495)
                      +|
T Consensus       214 ~N  215 (272)
T 3rfs_A          214 DN  215 (272)
T ss_dssp             SS
T ss_pred             CC
Confidence            44

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.55  E-value=1.9e-15  Score=145.06  Aligned_cols=106  Identities=13%  Similarity=0.236  Sum_probs=65.9

Q ss_pred             CCccEEEeecCCCchh-hhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccc--cCCCCCCCCCCcE
Q 011033          221 PSLKSLFVWYCPKLES-IAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVS--FPEGGLPCAKLSK  297 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~  297 (495)
                      ++|++|++++|..... ++..+..+++|++|++++|......+..+..+++|++|++++|..++.  ++..+..+++|+.
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~  172 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  172 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence            5677777777664433 666677777778887777643334455566677777777777754442  4444555667777


Q ss_pred             EEecCcccccc--ccccccCCC-CcceeEecc
Q 011033          298 LRIYGCERLEA--LPKGLHNLT-SLQQLTIGG  326 (495)
Q Consensus       298 L~l~~~~~~~~--~~~~l~~l~-~L~~L~l~~  326 (495)
                      |++++|..++.  ++..+..++ +|++|++++
T Consensus       173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~  204 (336)
T 2ast_B          173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  204 (336)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             EcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence            77777733443  344455555 555555544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.54  E-value=2.1e-14  Score=134.51  Aligned_cols=174  Identities=17%  Similarity=0.196  Sum_probs=129.1

Q ss_pred             CCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcce
Q 011033          242 DNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQ  321 (495)
Q Consensus       242 ~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  321 (495)
                      ..+++|+.|++++| .+..++ .+..+++|++|++++| .++.++. +..+++|+.|++++|. ++.++ .+..+++|++
T Consensus        43 ~~l~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~  116 (291)
T 1h6t_A           43 NELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKS  116 (291)
T ss_dssp             HHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCE
T ss_pred             hhcCcccEEEccCC-CcccCh-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCc-CCCCh-hhccCCCCCE
Confidence            35678899999885 455564 4778899999999988 5666655 6778899999999885 55565 4888899999


Q ss_pred             eEecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCC
Q 011033          322 LTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASL  400 (495)
Q Consensus       322 L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L  400 (495)
                      |++++ .+..++....+++|++|++++|.. ...  .   .+..+++|++|++++|  .+..++.-        ..+++|
T Consensus       117 L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l-~~~--~---~l~~l~~L~~L~L~~N--~l~~~~~l--------~~l~~L  180 (291)
T 1h6t_A          117 LSLEHNGISDINGLVHLPQLESLYLGNNKI-TDI--T---VLSRLTKLDTLSLEDN--QISDIVPL--------AGLTKL  180 (291)
T ss_dssp             EECTTSCCCCCGGGGGCTTCCEEECCSSCC-CCC--G---GGGGCTTCSEEECCSS--CCCCCGGG--------TTCTTC
T ss_pred             EECCCCcCCCChhhcCCCCCCEEEccCCcC-Ccc--h---hhccCCCCCEEEccCC--ccccchhh--------cCCCcc
Confidence            99988 777776566778888888888863 222  2   4677888888888887  66665542        256788


Q ss_pred             ceeeecccccccccccccccCCCCCeEeccCCCCCCCCCC
Q 011033          401 TSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPE  440 (495)
Q Consensus       401 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~  440 (495)
                      +.|++++ +.++.++ .+..+++|+.|++++|+ +...+.
T Consensus       181 ~~L~L~~-N~i~~l~-~l~~l~~L~~L~l~~n~-i~~~~~  217 (291)
T 1h6t_A          181 QNLYLSK-NHISDLR-ALAGLKNLDVLELFSQE-CLNKPI  217 (291)
T ss_dssp             CEEECCS-SCCCBCG-GGTTCTTCSEEEEEEEE-EECCCE
T ss_pred             CEEECCC-CcCCCCh-hhccCCCCCEEECcCCc-ccCCcc
Confidence            8888888 5777777 47788888888888854 444443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.54  E-value=1.3e-13  Score=126.35  Aligned_cols=63  Identities=19%  Similarity=0.355  Sum_probs=32.6

Q ss_pred             CCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccccc-ccccCCCCCeEeccCCC
Q 011033          362 FHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-SIVDLQNLTHLNLVDCP  433 (495)
Q Consensus       362 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~  433 (495)
                      +.++++|++|++++|  .+..++...      +..+++|+.|++++ +.++.++. .+..+++|++|++++|+
T Consensus       127 ~~~l~~L~~L~Ls~N--~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          127 FDRLTKLKELRLNTN--QLQSIPAGA------FDKLTNLQTLSLST-NQLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             TTTCTTCCEEECCSS--CCCCCCTTT------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             hccCCcccEEECcCC--cCCccCHHH------cCcCcCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCc
Confidence            445555556666555  444444321      12334566666655 44444443 45556666666666643

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.53  E-value=1.9e-13  Score=125.23  Aligned_cols=152  Identities=22%  Similarity=0.235  Sum_probs=108.4

Q ss_pred             CCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcE
Q 011033          219 LPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSK  297 (495)
Q Consensus       219 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~  297 (495)
                      +++.++.|++++|......+..+..+++|++|++++|......+..+..+++|++|++++| .++.++. .+..+++|+.
T Consensus        33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~  111 (251)
T 3m19_A           33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDK  111 (251)
T ss_dssp             CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCE
Confidence            4478899999988877766777888899999999886443333455788889999999888 5555554 5567788999


Q ss_pred             EEecCccccccccc-cccCCCCcceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEe
Q 011033          298 LRIYGCERLEALPK-GLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTI  373 (495)
Q Consensus       298 L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l  373 (495)
                      |++++|. ++.++. .+..+++|++|++++ .+..++..  ..+++|++|++++|.. ....+.   .+.++++|+.|++
T Consensus       112 L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~---~~~~l~~L~~L~l  186 (251)
T 3m19_A          112 LYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL-QSVPHG---AFDRLGKLQTITL  186 (251)
T ss_dssp             EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTT---TTTTCTTCCEEEC
T ss_pred             EEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC-CccCHH---HHhCCCCCCEEEe
Confidence            9998885 445544 467788888888888 77766653  4456777777777762 222222   4666777777777


Q ss_pred             ecc
Q 011033          374 EGC  376 (495)
Q Consensus       374 ~~~  376 (495)
                      ++|
T Consensus       187 ~~N  189 (251)
T 3m19_A          187 FGN  189 (251)
T ss_dssp             CSC
T ss_pred             eCC
Confidence            776

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.53  E-value=6.7e-14  Score=142.26  Aligned_cols=186  Identities=26%  Similarity=0.337  Sum_probs=113.2

Q ss_pred             ccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEec
Q 011033           53 RLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYI  132 (495)
Q Consensus        53 ~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l  132 (495)
                      +|+.|++++| .+..+|..+  +++|++|++++| .++.+|  ..+++|++|++++|. +..+|. +.    .+|+.|++
T Consensus        60 ~L~~L~Ls~n-~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip--~~l~~L~~L~Ls~N~-l~~ip~-l~----~~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRL-NLSSLPDNL--PPQITVLEITQN-ALISLP--ELPASLEYLDACDNR-LSTLPE-LP----ASLKHLDV  127 (571)
T ss_dssp             TCSEEECCSS-CCSCCCSCC--CTTCSEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCCC-CC----TTCCEEEC
T ss_pred             CccEEEeCCC-CCCccCHhH--cCCCCEEECcCC-CCcccc--cccCCCCEEEccCCC-CCCcch-hh----cCCCEEEC
Confidence            7888888887 456677654  367888888887 666777  567888888888876 555666 33    26888888


Q ss_pred             ccCccccccccccCCCCccEEEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCccccc
Q 011033          133 EHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLE  212 (495)
Q Consensus       133 ~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  212 (495)
                      ++| .++.+|.  .+++|+.|+++++ .++.+  +.                                            
T Consensus       128 s~N-~l~~lp~--~l~~L~~L~Ls~N-~l~~l--p~--------------------------------------------  157 (571)
T 3cvr_A          128 DNN-QLTMLPE--LPALLEYINADNN-QLTML--PE--------------------------------------------  157 (571)
T ss_dssp             CSS-CCSCCCC--CCTTCCEEECCSS-CCSCC--CC--------------------------------------------
T ss_pred             CCC-cCCCCCC--cCccccEEeCCCC-ccCcC--CC--------------------------------------------
Confidence            874 4555665  5667777777664 34332  21                                            


Q ss_pred             ccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCc-------cEEEeeCCCCcccc
Q 011033          213 SLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQL-------QEIEIWECENLVSF  285 (495)
Q Consensus       213 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L-------~~L~l~~~~~l~~l  285 (495)
                            .+++|+.|++++|.... +|. +.  ++|+.|++++| .+..+|. +..  +|       +.|++++| .++.+
T Consensus       158 ------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~l  222 (571)
T 3cvr_A          158 ------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCREN-RITHI  222 (571)
T ss_dssp             ------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCSS-CCCCC
T ss_pred             ------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCCC-cceec
Confidence                  11445555555444332 343 33  56666666664 3445554 332  55       77777766 55566


Q ss_pred             CCCCCCCCCCcEEEecCccccccccccccC
Q 011033          286 PEGGLPCAKLSKLRIYGCERLEALPKGLHN  315 (495)
Q Consensus       286 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  315 (495)
                      |..+..+++|+.|++++|+....+|..+..
T Consensus       223 p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          223 PENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             CGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             CHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            665555667777777777655555554433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.52  E-value=1.8e-15  Score=148.18  Aligned_cols=87  Identities=17%  Similarity=0.064  Sum_probs=57.4

Q ss_pred             HHhhhhhcccccceeecccccCCcc----ccccccCCCCccEEEEeCCCCCCC----CCC--------CCCCCCCcEEEE
Q 011033           43 QQQQLCELSCRLEYLRLSYCEGLVK----LPQSSLSLSSLREIEIYKCSSLVS----FPE--------VALPSKLKIIEI  106 (495)
Q Consensus        43 ~~~~l~~~~~~L~~L~ls~~~~l~~----l~~~~~~l~~L~~L~l~~~~~l~~----l~~--------~~~~~~L~~L~l  106 (495)
                      .+..+    ++|++|++++|.....    ++..+..+++|++|++++| .+..    +|.        +..+++|++|++
T Consensus        27 ~l~~~----~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           27 VLLED----DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             HHHHC----SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHhcC----CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            36666    8888888888744332    3334667888888888887 3332    222        256788888888


Q ss_pred             eCCCCCC----ccccccccCCCCCccEEecccCc
Q 011033          107 EGCDALK----SLPEAWMCDTNSSLETLYIEHCR  136 (495)
Q Consensus       107 ~~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~  136 (495)
                      ++|....    .++..+...  ++|++|++++|.
T Consensus       102 s~n~l~~~~~~~l~~~l~~~--~~L~~L~L~~n~  133 (386)
T 2ca6_A          102 SDNAFGPTAQEPLIDFLSKH--TPLEHLYLHNNG  133 (386)
T ss_dssp             CSCCCCTTTHHHHHHHHHHC--TTCCEEECCSSC
T ss_pred             CCCcCCHHHHHHHHHHHHhC--CCCCEEECcCCC
Confidence            8877433    255555544  778888888764

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.52  E-value=9.4e-16  Score=150.12  Aligned_cols=95  Identities=11%  Similarity=0.109  Sum_probs=67.6

Q ss_pred             cCccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeeccccc--CC-cccccc-------ccCCCCccE
Q 011033           11 HNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCE--GL-VKLPQS-------SLSLSSLRE   80 (495)
Q Consensus        11 ~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~--~l-~~l~~~-------~~~l~~L~~   80 (495)
                      ....+..+++|++|++++| .++......+...+..+    ++|++|++++|.  .+ ..+|..       +..+++|++
T Consensus        24 l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~----~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~   98 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASK----KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT   98 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTC----TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred             HHHHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhC----CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence            3456778999999999995 56654332122224445    999999999972  22 134433       378999999


Q ss_pred             EEEeCCCCCCC-----CCC-CCCCCCCcEEEEeCCCC
Q 011033           81 IEIYKCSSLVS-----FPE-VALPSKLKIIEIEGCDA  111 (495)
Q Consensus        81 L~l~~~~~l~~-----l~~-~~~~~~L~~L~l~~~~~  111 (495)
                      |++++| .++.     ++. +..+++|++|++++|..
T Consensus        99 L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l  134 (386)
T 2ca6_A           99 VRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNNGL  134 (386)
T ss_dssp             EECCSC-CCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             EECCCC-cCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence            999998 5554     332 67789999999999984

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.52  E-value=7.9e-14  Score=130.58  Aligned_cols=98  Identities=13%  Similarity=0.142  Sum_probs=51.9

Q ss_pred             cccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEe
Q 011033           52 CRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLY  131 (495)
Q Consensus        52 ~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  131 (495)
                      ++|+.|++++| .+..++. +..+++|++|++++| .++.++.+..+++|++|++++|. +..++. +..+  ++|++|+
T Consensus        46 ~~L~~L~l~~~-~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~-l~~l--~~L~~L~  118 (291)
T 1h6t_A           46 NSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDENK-VKDLSS-LKDL--KKLKSLS  118 (291)
T ss_dssp             HTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCGGG-GTTC--TTCCEEE
T ss_pred             CcccEEEccCC-CcccChh-HhcCCCCCEEEccCC-ccCCCcccccCCCCCEEECCCCc-CCCChh-hccC--CCCCEEE
Confidence            66666666665 4455543 566666666666665 45555546666666666666655 333332 2222  5555555


Q ss_pred             cccCccccccccccCCCCccEEEecc
Q 011033          132 IEHCRTLTYLAGVQLPRSLKRLDILS  157 (495)
Q Consensus       132 l~~~~~l~~~~~~~~~~~L~~L~l~~  157 (495)
                      +++| .++.++....+++|+.|++++
T Consensus       119 L~~n-~i~~~~~l~~l~~L~~L~l~~  143 (291)
T 1h6t_A          119 LEHN-GISDINGLVHLPQLESLYLGN  143 (291)
T ss_dssp             CTTS-CCCCCGGGGGCTTCCEEECCS
T ss_pred             CCCC-cCCCChhhcCCCCCCEEEccC
Confidence            5553 233333333334444444443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.47  E-value=1.6e-13  Score=141.01  Aligned_cols=122  Identities=12%  Similarity=0.148  Sum_probs=79.1

Q ss_pred             cccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCC
Q 011033           18 ICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVAL   97 (495)
Q Consensus        18 ~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~   97 (495)
                      +..+..+.+.. ..+.++..      +..+    ++|+.|++++| .+..++. +..+++|++|+|++| .+..++++..
T Consensus        20 l~~l~~l~l~~-~~i~~~~~------~~~L----~~L~~L~l~~n-~i~~l~~-l~~l~~L~~L~Ls~N-~l~~~~~l~~   85 (605)
T 1m9s_A           20 FAETIKDNLKK-KSVTDAVT------QNEL----NSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGN-KLTDIKPLTN   85 (605)
T ss_dssp             HHHHHHHHTTC-SCTTSEEC------HHHH----TTCCCCBCTTC-CCCCCTT-GGGCTTCCEEECTTS-CCCCCGGGGG
T ss_pred             HHHHHHHhccC-CCcccccc------hhcC----CCCCEEECcCC-CCCCChH-HccCCCCCEEEeeCC-CCCCChhhcc
Confidence            44455555555 44555443      5566    77888888876 4566653 777888888888777 5666666777


Q ss_pred             CCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccccCCCCccEEEeccC
Q 011033           98 PSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSC  158 (495)
Q Consensus        98 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~  158 (495)
                      +++|+.|++++|. +..++ .+..+  ++|+.|++++| .+..++....+++|+.|+++++
T Consensus        86 l~~L~~L~Ls~N~-l~~l~-~l~~l--~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N  141 (605)
T 1m9s_A           86 LKNLGWLFLDENK-IKDLS-SLKDL--KKLKSLSLEHN-GISDINGLVHLPQLESLYLGNN  141 (605)
T ss_dssp             CTTCCEEECCSSC-CCCCT-TSTTC--TTCCEEECTTS-CCCCCGGGGGCTTCSEEECCSS
T ss_pred             CCCCCEEECcCCC-CCCCh-hhccC--CCCCEEEecCC-CCCCCccccCCCccCEEECCCC
Confidence            7788888888776 44444 33333  77777777774 3555555556666777776664

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.46  E-value=5e-13  Score=117.47  Aligned_cols=150  Identities=17%  Similarity=0.164  Sum_probs=88.8

Q ss_pred             CCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCCCCCCccceeE
Q 011033          266 HNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLH  344 (495)
Q Consensus       266 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~  344 (495)
                      ..+++|+.|++++| .+..++ .+..+++|+.|++++| .++.++ .+..+++|++|++++ .+..              
T Consensus        41 ~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~--------------  102 (197)
T 4ezg_A           41 AQMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTS--------------  102 (197)
T ss_dssp             HHHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBG--------------
T ss_pred             hhcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCc--------------
Confidence            45678888888887 566666 5666778888888887 344443 455566666665555 3332              


Q ss_pred             eeccCccchhhhcccccCCCCCccceEEeecccccccc-chhhhccccccCCCCCCCceeeecccccccccccccccCCC
Q 011033          345 IWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVS-FPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQN  423 (495)
Q Consensus       345 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~  423 (495)
                               ..+.   .+.++++|++|++++|  .+.. .+...       ..+++|+.|++++|..++.++ .+..+++
T Consensus       103 ---------~~~~---~l~~l~~L~~L~Ls~n--~i~~~~~~~l-------~~l~~L~~L~L~~n~~i~~~~-~l~~l~~  160 (197)
T 4ezg_A          103 ---------DKIP---NLSGLTSLTLLDISHS--AHDDSILTKI-------NTLPKVNSIDLSYNGAITDIM-PLKTLPE  160 (197)
T ss_dssp             ---------GGSC---CCTTCTTCCEEECCSS--BCBGGGHHHH-------TTCSSCCEEECCSCTBCCCCG-GGGGCSS
T ss_pred             ---------ccCh---hhcCCCCCCEEEecCC--ccCcHhHHHH-------hhCCCCCEEEccCCCCccccH-hhcCCCC
Confidence                     1111   3455566666666665  3333 12211       234566666666654466666 5666777


Q ss_pred             CCeEeccCCCCCCCCCCCCCccccceeeccCCc
Q 011033          424 LTHLNLVDCPKLKYFPEKGLPSSLLQLSIYRCP  456 (495)
Q Consensus       424 L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~  456 (495)
                      |++|++++| .++.++....+++|++|++++++
T Consensus       161 L~~L~l~~n-~i~~~~~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          161 LKSLNIQFD-GVHDYRGIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             CCEEECTTB-CCCCCTTGGGCSSCCEEEECBC-
T ss_pred             CCEEECCCC-CCcChHHhccCCCCCEEEeeCcc
Confidence            777777774 36665543346677777777664

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.46  E-value=2.1e-14  Score=139.06  Aligned_cols=226  Identities=16%  Similarity=0.111  Sum_probs=142.6

Q ss_pred             CCCCccEEEeecCCCchhhh----hhcCCCC-CCcEEeeeCCCCCCcccccCCCC-----CCccEEEeeCCCCccccCC-
Q 011033          219 LPPSLKSLFVWYCPKLESIA----ERLDNNT-SLETINISGCENLKILPSGLHNL-----GQLQEIEIWECENLVSFPE-  287 (495)
Q Consensus       219 ~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~l~~~~~~l-----~~L~~L~l~~~~~l~~l~~-  287 (495)
                      .+++|++|++++|......+    ..+..++ +|++|++++|......+..+..+     ++|++|++++| .++.... 
T Consensus        20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~   98 (362)
T 3goz_A           20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKSSD   98 (362)
T ss_dssp             SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHH
T ss_pred             CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHHHH
Confidence            44669999999887655444    5677788 89999999864333323334332     88999999998 4554332 


Q ss_pred             ----CCCCC-CCCcEEEecCcccccccc-cc----ccC-CCCcceeEecc-cccc-----ccCC--CCCCccceeEeecc
Q 011033          288 ----GGLPC-AKLSKLRIYGCERLEALP-KG----LHN-LTSLQQLTIGG-ELPS-----LEED--GLPTNLHSLHIWGN  348 (495)
Q Consensus       288 ----~~~~~-~~L~~L~l~~~~~~~~~~-~~----l~~-l~~L~~L~l~~-~l~~-----~~~~--~~~~~L~~L~l~~~  348 (495)
                          .+..+ ++|+.|++++|.. +..+ ..    +.. .++|++|++++ .+..     ++..  ..+++|++|++++|
T Consensus        99 ~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n  177 (362)
T 3goz_A           99 ELVKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN  177 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSSCG-GGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred             HHHHHHHhCCCCccEEECcCCcC-CcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence                13333 6899999999874 4332 22    334 36899999988 5542     2111  22348999999998


Q ss_pred             CccchhhhcccccCCCC-CccceEEeecccccccc-----chhhhccccccCCCCCCCceeeecccccccccc-----cc
Q 011033          349 MEIWKSMIERGRGFHRF-SSLRHLTIEGCDDDMVS-----FPLEDKRLGTALPLPASLTSLRIVDFPNLERLS-----SS  417 (495)
Q Consensus       349 ~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-----~~  417 (495)
                      .............+..+ ++|++|++++|  .+..     ++....      ..+++|+.|++++ +.++..+     ..
T Consensus       178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N--~i~~~~~~~l~~~l~------~~~~~L~~L~Ls~-N~l~~~~~~~l~~~  248 (362)
T 3goz_A          178 NLASKNCAELAKFLASIPASVTSLDLSAN--LLGLKSYAELAYIFS------SIPNHVVSLNLCL-NCLHGPSLENLKLL  248 (362)
T ss_dssp             CGGGSCHHHHHHHHHTSCTTCCEEECTTS--CGGGSCHHHHHHHHH------HSCTTCCEEECCS-SCCCCCCHHHHHHT
T ss_pred             CCchhhHHHHHHHHHhCCCCCCEEECCCC--CCChhHHHHHHHHHh------cCCCCceEEECcC-CCCCcHHHHHHHHH
Confidence            74322221111134455 48999999998  4444     333221      1245899999998 4665543     24


Q ss_pred             cccCCCCCeEeccCCCCCCCCCC---------CCCccccceeeccCCc
Q 011033          418 IVDLQNLTHLNLVDCPKLKYFPE---------KGLPSSLLQLSIYRCP  456 (495)
Q Consensus       418 ~~~~~~L~~L~l~~c~~l~~l~~---------~~~~~~L~~L~l~~c~  456 (495)
                      +..+++|++|++++|. +..+..         ...+++|++|++++|+
T Consensus       249 ~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          249 KDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             TTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             HhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            5677889999999864 333321         1235788899999886

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.46  E-value=1e-12  Score=133.59  Aligned_cols=181  Identities=21%  Similarity=0.251  Sum_probs=95.0

Q ss_pred             CccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEec
Q 011033          222 SLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIY  301 (495)
Q Consensus       222 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  301 (495)
                      +++.|++++|... .+|..+  +++|+.|++++| .+..+|   ..+++|++|++++| .++.+|. +..  +|+.|+++
T Consensus        60 ~L~~L~Ls~n~L~-~lp~~l--~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLS-SLPDNL--PPQITVLEITQN-ALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCS-CCCSCC--CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCC-ccCHhH--cCCCCEEECcCC-CCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECC
Confidence            5666777655433 344433  256666776664 344555   33566666666666 4455555 322  66666666


Q ss_pred             CccccccccccccCCCCcceeEecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeecccccc
Q 011033          302 GCERLEALPKGLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDM  380 (495)
Q Consensus       302 ~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  380 (495)
                      +|. ++.+|.   .+++|+.|++++ .+..+|.  .+++|++|++++|.. .. ++.    +.  ++|+.|++++|  .+
T Consensus       129 ~N~-l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L-~~-lp~----l~--~~L~~L~Ls~N--~L  192 (571)
T 3cvr_A          129 NNQ-LTMLPE---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQL-TF-LPE----LP--ESLEALDVSTN--LL  192 (571)
T ss_dssp             SSC-CSCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCC-SC-CCC----CC--TTCCEEECCSS--CC
T ss_pred             CCc-CCCCCC---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCC-CC-cch----hh--CCCCEEECcCC--CC
Confidence            664 444554   456666666666 5555544  455666666666652 21 111    11  56666666665  45


Q ss_pred             ccchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCC
Q 011033          381 VSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCP  433 (495)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~  433 (495)
                      ..++. ...  .-...++.|+.|++++ +.++.+|..+..+++|+.|++++|+
T Consensus       193 ~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          193 ESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             SSCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred             Cchhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCc
Confidence            54444 200  0000011126666666 4555666555556666666666643

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.44  E-value=4.7e-13  Score=137.53  Aligned_cols=175  Identities=17%  Similarity=0.193  Sum_probs=138.6

Q ss_pred             cCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcc
Q 011033          241 LDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQ  320 (495)
Q Consensus       241 ~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  320 (495)
                      +..+++|+.|++++| .+..++ .+..+++|+.|++++| .+..++. +..+++|+.|++++|. +..+| .+..+++|+
T Consensus        39 ~~~L~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~  112 (605)
T 1m9s_A           39 QNELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLK  112 (605)
T ss_dssp             HHHHTTCCCCBCTTC-CCCCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCC
T ss_pred             hhcCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCC
Confidence            345678999999885 466665 5788999999999998 5666655 6778899999999985 56665 688999999


Q ss_pred             eeEecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCC
Q 011033          321 QLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPAS  399 (495)
Q Consensus       321 ~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (495)
                      .|++++ .+..++....+++|+.|++++|.. ...  .   .+..+++|+.|++++|  .+..++.-        ..+++
T Consensus       113 ~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l-~~l--~---~l~~l~~L~~L~Ls~N--~l~~~~~l--------~~l~~  176 (605)
T 1m9s_A          113 SLSLEHNGISDINGLVHLPQLESLYLGNNKI-TDI--T---VLSRLTKLDTLSLEDN--QISDIVPL--------AGLTK  176 (605)
T ss_dssp             EEECTTSCCCCCGGGGGCTTCSEEECCSSCC-CCC--G---GGGSCTTCSEEECCSS--CCCCCGGG--------TTCTT
T ss_pred             EEEecCCCCCCCccccCCCccCEEECCCCcc-CCc--h---hhcccCCCCEEECcCC--cCCCchhh--------ccCCC
Confidence            999999 887777677789999999999973 322  2   4788999999999998  66666552        25679


Q ss_pred             CceeeecccccccccccccccCCCCCeEeccCCCCCCCCCC
Q 011033          400 LTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPE  440 (495)
Q Consensus       400 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~  440 (495)
                      |+.|+|++ +.++.++ .+..+++|+.|++++|+ +...|.
T Consensus       177 L~~L~Ls~-N~i~~l~-~l~~l~~L~~L~L~~N~-l~~~p~  214 (605)
T 1m9s_A          177 LQNLYLSK-NHISDLR-ALAGLKNLDVLELFSQE-CLNKPI  214 (605)
T ss_dssp             CCEEECCS-SCCCBCG-GGTTCTTCSEEECCSEE-EECCCC
T ss_pred             CCEEECcC-CCCCCCh-HHccCCCCCEEEccCCc-CcCCcc
Confidence            99999999 5778876 68889999999999965 544443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.42  E-value=2.1e-14  Score=139.11  Aligned_cols=242  Identities=16%  Similarity=0.065  Sum_probs=153.0

Q ss_pred             ccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCC-----CCCcEEeeeCCCCC
Q 011033          184 SSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNN-----TSLETINISGCENL  258 (495)
Q Consensus       184 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~  258 (495)
                      .++++.|+++++ .++...     +..+.. ....++.+|++|++++|......+..+..+     ++|++|++++|...
T Consensus        21 ~~~L~~L~Ls~n-~l~~~~-----~~~l~~-~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~   93 (362)
T 3goz_A           21 PHGVTSLDLSLN-NLYSIS-----TVELIQ-AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS   93 (362)
T ss_dssp             CTTCCEEECTTS-CGGGSC-----HHHHHH-HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred             CCCceEEEccCC-CCChHH-----HHHHHH-HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence            345999999985 355440     000000 112332389999999997766555544443     99999999997533


Q ss_pred             Ccccc----cCCCC-CCccEEEeeCCCCccccCC-----CCCC-CCCCcEEEecCccccc----cccccccCCC-Cccee
Q 011033          259 KILPS----GLHNL-GQLQEIEIWECENLVSFPE-----GGLP-CAKLSKLRIYGCERLE----ALPKGLHNLT-SLQQL  322 (495)
Q Consensus       259 ~~l~~----~~~~l-~~L~~L~l~~~~~l~~l~~-----~~~~-~~~L~~L~l~~~~~~~----~~~~~l~~l~-~L~~L  322 (495)
                      ...+.    .+..+ ++|++|++++| .++..+.     .+.. +++|++|++++|..-.    .++..+..++ +|++|
T Consensus        94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L  172 (362)
T 3goz_A           94 YKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL  172 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred             hHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence            32222    24445 89999999999 4555442     1222 3599999999986442    3444555665 99999


Q ss_pred             Eecc-ccccccCC------CCC-CccceeEeeccCccchhhhcccccCCC-CCccceEEeeccccccccchhhhcccccc
Q 011033          323 TIGG-ELPSLEED------GLP-TNLHSLHIWGNMEIWKSMIERGRGFHR-FSSLRHLTIEGCDDDMVSFPLEDKRLGTA  393 (495)
Q Consensus       323 ~l~~-~l~~~~~~------~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  393 (495)
                      ++++ .+......      ... ++|++|++++|..-..........+.. .++|++|++++|  .+.......  +...
T Consensus       173 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N--~l~~~~~~~--l~~~  248 (362)
T 3goz_A          173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN--CLHGPSLEN--LKLL  248 (362)
T ss_dssp             ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS--CCCCCCHHH--HHHT
T ss_pred             eecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC--CCCcHHHHH--HHHH
Confidence            9999 66544321      123 599999999998433211110113444 459999999998  555433211  1112


Q ss_pred             CCCCCCCceeeecccc-------cccccccccccCCCCCeEeccCCCCCCCC
Q 011033          394 LPLPASLTSLRIVDFP-------NLERLSSSIVDLQNLTHLNLVDCPKLKYF  438 (495)
Q Consensus       394 ~~~~~~L~~L~l~~~~-------~l~~l~~~~~~~~~L~~L~l~~c~~l~~l  438 (495)
                      +...++|+.|++++|.       .+..++..+..+++|++|++++|+ +...
T Consensus       249 ~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~-l~~~  299 (362)
T 3goz_A          249 KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE-IHPS  299 (362)
T ss_dssp             TTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB-CCGG
T ss_pred             HhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc-CCCc
Confidence            2356789999999964       134455577889999999999965 5443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.41  E-value=9.8e-13  Score=115.62  Aligned_cols=146  Identities=12%  Similarity=0.090  Sum_probs=105.9

Q ss_pred             CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEe
Q 011033          221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRI  300 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l  300 (495)
                      ++|++|++++|... .++ .+..+++|++|++++| .+..+ ..+..+++|++|++++|..-...+..+..+++|+.|++
T Consensus        44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            56777888766544 444 4677788888888886 44444 35777888888888887433345666777788888888


Q ss_pred             cCccccccccccccCCCCcceeEecc-c-cccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeecc
Q 011033          301 YGCERLEALPKGLHNLTSLQQLTIGG-E-LPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGC  376 (495)
Q Consensus       301 ~~~~~~~~~~~~l~~l~~L~~L~l~~-~-l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  376 (495)
                      ++|......+..+..+++|++|++++ . +..++....+++|++|++++|.... ..     .+..+++|++|++++|
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~-~~-----~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD-YR-----GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC-CT-----TGGGCSSCCEEEECBC
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC-hH-----HhccCCCCCEEEeeCc
Confidence            88865555666778888888888888 5 7777766677888888888887322 11     4677888999999887

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.40  E-value=9.8e-13  Score=121.12  Aligned_cols=99  Identities=14%  Similarity=0.259  Sum_probs=54.1

Q ss_pred             ccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCC
Q 011033           17 DICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVA   96 (495)
Q Consensus        17 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~   96 (495)
                      .+.++..+++++ +.+++++.      +..+    ++|++|++++| .+..++ .+..+++|++|++++| .++.++.+.
T Consensus        17 ~l~~l~~l~l~~-~~i~~~~~------~~~l----~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~l~   82 (263)
T 1xeu_A           17 GLANAVKQNLGK-QSVTDLVS------QKEL----SGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSPLK   82 (263)
T ss_dssp             HHHHHHHHHHTC-SCTTSEEC------HHHH----TTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGT
T ss_pred             HHHHHHHHHhcC-CCcccccc------hhhc----CcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChhhc
Confidence            345555556666 45555542      5555    66666666665 445555 3566666666666665 455555455


Q ss_pred             CCCCCcEEEEeCCCCCCccccccccCCCCCccEEeccc
Q 011033           97 LPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEH  134 (495)
Q Consensus        97 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  134 (495)
                      .+++|++|++++|. +..++....    ++|+.|++++
T Consensus        83 ~l~~L~~L~L~~N~-l~~l~~~~~----~~L~~L~L~~  115 (263)
T 1xeu_A           83 DLTKLEELSVNRNR-LKNLNGIPS----ACLSRLFLDN  115 (263)
T ss_dssp             TCSSCCEEECCSSC-CSCCTTCCC----SSCCEEECCS
T ss_pred             cCCCCCEEECCCCc-cCCcCcccc----CcccEEEccC
Confidence            56666666666655 333333211    4455555554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.39  E-value=2.8e-13  Score=124.77  Aligned_cols=102  Identities=20%  Similarity=0.247  Sum_probs=47.9

Q ss_pred             cCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcc
Q 011033          241 LDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQ  320 (495)
Q Consensus       241 ~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  320 (495)
                      +..+++|+.|++++| .+..++ .+..+++|+.|++++| .++.++. +..+++|+.|++++|. ++.+|. +.. ++|+
T Consensus        37 ~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~-~~~-~~L~  109 (263)
T 1xeu_A           37 QKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNR-LKNLNG-IPS-ACLS  109 (263)
T ss_dssp             HHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSC-CSCCTT-CCC-SSCC
T ss_pred             hhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCc-cCCcCc-ccc-Cccc
Confidence            344555666666553 344443 3455555666666555 3444443 4445555555555553 333332 111 4455


Q ss_pred             eeEecc-ccccccCCCCCCccceeEeeccC
Q 011033          321 QLTIGG-ELPSLEEDGLPTNLHSLHIWGNM  349 (495)
Q Consensus       321 ~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~  349 (495)
                      +|++++ .+..++....+++|++|++++|.
T Consensus       110 ~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~  139 (263)
T 1xeu_A          110 RLFLDNNELRDTDSLIHLKNLEILSIRNNK  139 (263)
T ss_dssp             EEECCSSCCSBSGGGTTCTTCCEEECTTSC
T ss_pred             EEEccCCccCCChhhcCcccccEEECCCCc
Confidence            555544 44433333334444444444443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.36  E-value=1.2e-11  Score=111.46  Aligned_cols=61  Identities=23%  Similarity=0.295  Sum_probs=30.9

Q ss_pred             CCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccccc-ccccCCCCCeEeccCC
Q 011033          362 FHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-SIVDLQNLTHLNLVDC  432 (495)
Q Consensus       362 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c  432 (495)
                      +..+++|+.|++++|  .+..++...       ..+++|+.|++++ +.++.++. .+..+++|++|++++|
T Consensus       108 ~~~l~~L~~L~Ls~N--~l~~lp~~~-------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          108 FDRLVHLKELFMCCN--KLTELPRGI-------ERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             TTTCTTCCEEECCSS--CCCSCCTTG-------GGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             hCcchhhCeEeccCC--cccccCccc-------ccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCC
Confidence            455556666666665  444444332       1334555555555 34444443 3445555555555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.35  E-value=1.1e-11  Score=109.98  Aligned_cols=104  Identities=23%  Similarity=0.252  Sum_probs=51.6

Q ss_pred             CCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCccc-ccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcE
Q 011033          220 PPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILP-SGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSK  297 (495)
Q Consensus       220 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~  297 (495)
                      ++++++|++++|......+..+..+++|++|++++| .+..++ ..+..+++|++|++++| .++.++. .+..+++|+.
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~  104 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKE  104 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCE
Confidence            355666666655544333334555666666666653 233333 23455566666666655 3444433 2344555666


Q ss_pred             EEecCccccccccc-cccCCCCcceeEecc
Q 011033          298 LRIYGCERLEALPK-GLHNLTSLQQLTIGG  326 (495)
Q Consensus       298 L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~  326 (495)
                      |++++|. ++.++. .+..+++|++|++++
T Consensus       105 L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~  133 (208)
T 2o6s_A          105 LALNTNQ-LQSLPDGVFDKLTQLKDLRLYQ  133 (208)
T ss_dssp             EECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred             EEcCCCc-CcccCHhHhccCCcCCEEECCC
Confidence            6665553 233322 234444444444444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.35  E-value=7.6e-12  Score=110.92  Aligned_cols=158  Identities=20%  Similarity=0.201  Sum_probs=121.0

Q ss_pred             CCCCcEEeeeCCCCCCccc-ccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEEEecCccccccccc-cccCCCCcc
Q 011033          244 NTSLETINISGCENLKILP-SGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLRIYGCERLEALPK-GLHNLTSLQ  320 (495)
Q Consensus       244 ~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~  320 (495)
                      .++|+.|+++++. +..++ ..+..+++|++|++++| .++.++. .+..+++|+.|++++|. ++.++. .+..+++|+
T Consensus        27 ~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~  103 (208)
T 2o6s_A           27 PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLK  103 (208)
T ss_dssp             CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred             CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCC
Confidence            4689999999964 55554 45788999999999998 6666665 45678999999999986 445544 578999999


Q ss_pred             eeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCC
Q 011033          321 QLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLP  397 (495)
Q Consensus       321 ~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  397 (495)
                      +|++++ .+..++..  ..+++|++|++++|. +......   .+.++++|++|++++|  .+.     +        .+
T Consensus       104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~---~~~~l~~L~~L~l~~N--~~~-----~--------~~  164 (208)
T 2o6s_A          104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDG---VFDRLTSLQYIWLHDN--PWD-----C--------TC  164 (208)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTT---TTTTCTTCCEEECCSC--CBC-----C--------CT
T ss_pred             EEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHH---HhccCCCccEEEecCC--Cee-----c--------CC
Confidence            999999 88877764  557899999999997 3333322   5788999999999998  322     1        34


Q ss_pred             CCCceeeecccccccccccccccCCC
Q 011033          398 ASLTSLRIVDFPNLERLSSSIVDLQN  423 (495)
Q Consensus       398 ~~L~~L~l~~~~~l~~l~~~~~~~~~  423 (495)
                      ++|+.|+++.+..-..+|..++.++.
T Consensus       165 ~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          165 PGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             TTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             CCHHHHHHHHHhCCceeeccCccccC
Confidence            68999999986656678876665554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.34  E-value=1.4e-11  Score=110.04  Aligned_cols=130  Identities=13%  Similarity=0.166  Sum_probs=94.4

Q ss_pred             CCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcE
Q 011033          219 LPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSK  297 (495)
Q Consensus       219 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~  297 (495)
                      ++++++.|++++|......+..+..+++|+.|++++|......+..+.++++|++|++++| .++.++. .+..+++|+.
T Consensus        30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~  108 (220)
T 2v9t_B           30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQL  108 (220)
T ss_dssp             CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred             cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCE
Confidence            4478899999887766655557888889999999886543333677888899999999888 6667765 4566788999


Q ss_pred             EEecCccccccccccccCCCCcceeEecc-ccccccCC--CCCCccceeEeeccC
Q 011033          298 LRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNM  349 (495)
Q Consensus       298 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~  349 (495)
                      |++++|......|..+..+++|++|++++ .+..++..  ..+++|++|++++|.
T Consensus       109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence            99988865444456777888888888887 66666543  334566666666665

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.33  E-value=8.1e-12  Score=120.75  Aligned_cols=152  Identities=16%  Similarity=0.158  Sum_probs=82.3

Q ss_pred             cEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCccc-ccCC-CCCCccEEEeeCCCCccccCC-CCCCCCCCcEEEe
Q 011033          224 KSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILP-SGLH-NLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLRI  300 (495)
Q Consensus       224 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~-~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l  300 (495)
                      +.++.+++ .+..+|..+  .+.++.|++++| .+..++ ..+. ++++|+.|++++| .+..++. .+..+++|+.|++
T Consensus        21 ~~l~c~~~-~l~~iP~~~--~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           21 NILSCSKQ-QLPNVPQSL--PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             TEEECCSS-CCSSCCSSC--CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred             CEEEeCCC-CcCccCccC--CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEEC
Confidence            45666533 344455433  245777777774 344443 3344 6777777777776 5555553 5666777777777


Q ss_pred             cCcccccccc-ccccCCCCcceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeecc
Q 011033          301 YGCERLEALP-KGLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGC  376 (495)
Q Consensus       301 ~~~~~~~~~~-~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  376 (495)
                      ++|. ++.++ ..+..+++|++|++++ .+..+++.  ..+++|++|++++|.. ..........+..+++|+.|++++|
T Consensus        96 s~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~~l~~L~~L~L~~N  173 (361)
T 2xot_A           96 SSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSN  173 (361)
T ss_dssp             CSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCGGGTC----CTTCCEEECCSS
T ss_pred             CCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC-CeeCHHHhcCcccCCcCCEEECCCC
Confidence            7775 34443 3566677777777766 55554332  3345666666666552 2111110001134556666666665


Q ss_pred             ccccccch
Q 011033          377 DDDMVSFP  384 (495)
Q Consensus       377 ~~~~~~~~  384 (495)
                        .+..++
T Consensus       174 --~l~~l~  179 (361)
T 2xot_A          174 --KLKKLP  179 (361)
T ss_dssp             --CCCCCC
T ss_pred             --CCCccC
Confidence              444444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.30  E-value=3.6e-11  Score=108.21  Aligned_cols=129  Identities=21%  Similarity=0.309  Sum_probs=96.7

Q ss_pred             CCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCccc-ccCCCCCCccEEEeeCCCCccccCC-CCCCCCCC
Q 011033          218 NLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILP-SGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKL  295 (495)
Q Consensus       218 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L  295 (495)
                      .++++|+.|++++|......+..+..+++|+.|++++|. +..++ ..+..+++|+.|++++| .++.++. .+..+++|
T Consensus        37 ~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L  114 (229)
T 3e6j_A           37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHL  114 (229)
T ss_dssp             CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred             CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhh
Confidence            345789999999888777777788888999999998854 55565 44678889999999888 6666665 45678889


Q ss_pred             cEEEecCccccccccccccCCCCcceeEecc-ccccccCC--CCCCccceeEeeccC
Q 011033          296 SKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNM  349 (495)
Q Consensus       296 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~  349 (495)
                      +.|++++|. ++.+|..+..+++|++|++++ .+..++..  ..+++|+.|++++|.
T Consensus       115 ~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          115 KELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             CEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            999998875 567888888888888888887 66666542  335566666666665

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.30  E-value=4.3e-11  Score=106.97  Aligned_cols=119  Identities=21%  Similarity=0.319  Sum_probs=56.7

Q ss_pred             EeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-c
Q 011033          250 INISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-E  327 (495)
Q Consensus       250 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~  327 (495)
                      ++.++ ..+..+|..+.  ++|+.|++++| .++.++. .+..+++|+.|++++|......|..+..+++|++|++++ .
T Consensus        16 v~c~~-~~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           16 VDCRG-KGLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             EECTT-SCCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             EEcCC-CCcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            34433 33444444333  45666666665 4444443 445555666666666543333344555666666666655 4


Q ss_pred             cccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeecc
Q 011033          328 LPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGC  376 (495)
Q Consensus       328 l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  376 (495)
                      +..++..  ..+++|++|++++|. +....+.   .+.++++|+.|++++|
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~---~~~~l~~L~~L~L~~N  138 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANK-INCLRVD---AFQDLHNLNLLSLYDN  138 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT---TTTTCTTCCEEECCSS
T ss_pred             CCccCHhHccCCCCCCEEECCCCC-CCEeCHH---HcCCCCCCCEEECCCC
Confidence            4444432  223344444444443 1111111   3444555555555554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.29  E-value=1.4e-11  Score=119.12  Aligned_cols=153  Identities=15%  Similarity=0.133  Sum_probs=118.0

Q ss_pred             CCCCCccEEEeecCCCchhhhhhcC-CCCCCcEEeeeCCCCCCccc-ccCCCCCCccEEEeeCCCCccccCC-CCCCCCC
Q 011033          218 NLPPSLKSLFVWYCPKLESIAERLD-NNTSLETINISGCENLKILP-SGLHNLGQLQEIEIWECENLVSFPE-GGLPCAK  294 (495)
Q Consensus       218 ~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~  294 (495)
                      .+++.++.|++++|......+..+. .+++|+.|++++| .+..++ ..+..+++|+.|++++| .++.++. .+..+++
T Consensus        36 ~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~  113 (361)
T 2xot_A           36 SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQA  113 (361)
T ss_dssp             SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTT
T ss_pred             cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcC
Confidence            3557799999998877666666676 8999999999985 455554 56889999999999998 5666665 5778899


Q ss_pred             CcEEEecCccccccccccccCCCCcceeEecc-ccccccCC-----CCCCccceeEeeccCccchhhhcccccCCCCCc-
Q 011033          295 LSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED-----GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSS-  367 (495)
Q Consensus       295 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~-  367 (495)
                      |+.|++++|......|..+..+++|++|++++ .+..++..     ..+++|+.|++++|.. ......   .+..++. 
T Consensus       114 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~---~~~~l~~~  189 (361)
T 2xot_A          114 LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL-KKLPLT---DLQKLPAW  189 (361)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC-CCCCHH---HHHHSCHH
T ss_pred             CCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC-CccCHH---HhhhccHh
Confidence            99999999875544466889999999999999 88777664     3478999999999973 322222   3555665 


Q ss_pred             -cceEEeecc
Q 011033          368 -LRHLTIEGC  376 (495)
Q Consensus       368 -L~~L~l~~~  376 (495)
                       ++.|++++|
T Consensus       190 ~l~~l~l~~N  199 (361)
T 2xot_A          190 VKNGLYLHNN  199 (361)
T ss_dssp             HHTTEECCSS
T ss_pred             hcceEEecCC
Confidence             488999987

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.26  E-value=3.8e-11  Score=114.49  Aligned_cols=119  Identities=15%  Similarity=0.155  Sum_probs=67.2

Q ss_pred             CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCccc-ccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCc-E
Q 011033          221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILP-SGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLS-K  297 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~-~  297 (495)
                      .+++.+.+.+.-...........+++|+++++.++ .+..++ .+|.++++|+.+++.++  ++.++. .+..|++|+ .
T Consensus       202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~  278 (329)
T 3sb4_A          202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGT  278 (329)
T ss_dssp             GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEE
T ss_pred             cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEE
Confidence            34555555543222222222223567777777663 344454 34666777777777664  555554 556666777 7


Q ss_pred             EEecCcccccccc-ccccCCCCcceeEecc-ccccccCC--CCCCccceeE
Q 011033          298 LRIYGCERLEALP-KGLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLH  344 (495)
Q Consensus       298 L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~  344 (495)
                      +++.+  .++.++ ..|.++++|+.+++.. .+..++..  ..+++|+.++
T Consensus       279 l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          279 LELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            77765  355553 3666777777777755 66555543  3355666654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.24  E-value=6.7e-11  Score=105.67  Aligned_cols=146  Identities=14%  Similarity=0.261  Sum_probs=74.2

Q ss_pred             cEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCC--CCCCCCCCcEEEecCcccccccc-ccccCCCCcceeEe
Q 011033          248 ETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPE--GGLPCAKLSKLRIYGCERLEALP-KGLHNLTSLQQLTI  324 (495)
Q Consensus       248 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l  324 (495)
                      +.+++++ +.+..+|..+.  +.++.|++++| .++.++.  .+..+++|+.|++++|. ++.++ ..+..+++|++|++
T Consensus        14 ~~l~~s~-n~l~~iP~~~~--~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           14 TTVDCSN-QKLNKIPEHIP--QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILL   88 (220)
T ss_dssp             TEEECCS-SCCSSCCSCCC--TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC
T ss_pred             CEeEeCC-CCcccCccCCC--CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEEC
Confidence            3556655 34455554442  34566666665 4444421  34455666666666654 33332 24555555555555


Q ss_pred             cc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCcee
Q 011033          325 GG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSL  403 (495)
Q Consensus       325 ~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  403 (495)
                      ++ .+..++.                          ..+.++++|++|++++|  .+..++...      +..+++|+.|
T Consensus        89 s~N~l~~~~~--------------------------~~~~~l~~L~~L~Ls~N--~l~~~~~~~------~~~l~~L~~L  134 (220)
T 2v70_A           89 TSNRLENVQH--------------------------KMFKGLESLKTLMLRSN--RITCVGNDS------FIGLSSVRLL  134 (220)
T ss_dssp             CSSCCCCCCG--------------------------GGGTTCSSCCEEECTTS--CCCCBCTTS------STTCTTCSEE
T ss_pred             CCCccCccCH--------------------------hHhcCCcCCCEEECCCC--cCCeECHhH------cCCCccCCEE
Confidence            44 3333322                          13455566666666665  444443211      1234556666


Q ss_pred             eeccccccccc-ccccccCCCCCeEeccCCC
Q 011033          404 RIVDFPNLERL-SSSIVDLQNLTHLNLVDCP  433 (495)
Q Consensus       404 ~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~  433 (495)
                      ++++ +.++.+ |..+..+++|++|++++|+
T Consensus       135 ~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          135 SLYD-NQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             ECTT-SCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             ECCC-CcCCEECHHHhcCCCCCCEEEecCcC
Confidence            6666 445544 3456666666666666644

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.23  E-value=2.9e-11  Score=103.15  Aligned_cols=129  Identities=16%  Similarity=0.145  Sum_probs=55.2

Q ss_pred             CCCcEEeeeCCCCC-CcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeE
Q 011033          245 TSLETINISGCENL-KILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLT  323 (495)
Q Consensus       245 ~~L~~L~l~~~~~~-~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  323 (495)
                      ++|+.|++++|... ..+|..+..+++|+.|++++| .++.+ ..+..+++|+.|++++|.....+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            44555555443321 134444444555555555555 23333 3344445555555555543222443444455555555


Q ss_pred             ecc-cccccc---CCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeecc
Q 011033          324 IGG-ELPSLE---EDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGC  376 (495)
Q Consensus       324 l~~-~l~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  376 (495)
                      +++ .+..++   ....+++|++|++++|.. ..........+..+++|++|++++|
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEecCCCC
Confidence            544 333332   112233444444444431 1111100013445555555555555

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.21  E-value=1.1e-10  Score=104.37  Aligned_cols=128  Identities=14%  Similarity=0.080  Sum_probs=66.4

Q ss_pred             CCCccEEEeecCCCchhhh-hhcCCCCCCcEEeeeCCCCCCcc-cccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCc
Q 011033          220 PPSLKSLFVWYCPKLESIA-ERLDNNTSLETINISGCENLKIL-PSGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLS  296 (495)
Q Consensus       220 ~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~  296 (495)
                      ++.++.|++++|......+ ..+..+++|+.|++++|. +..+ +..+.++++|++|++++| .++.++. .+..+++|+
T Consensus        31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~  108 (220)
T 2v70_A           31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLK  108 (220)
T ss_dssp             CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCC
T ss_pred             CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCC
Confidence            3456666666655444322 235566666666666643 3333 235666666666666666 3344333 344556666


Q ss_pred             EEEecCccccccccccccCCCCcceeEecc-ccccccCC--CCCCccceeEeeccC
Q 011033          297 KLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNM  349 (495)
Q Consensus       297 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~  349 (495)
                      .|++++|......|..+..+++|++|++++ .+..+++.  ..+++|++|++++|.
T Consensus       109 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          109 TLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             EEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             EEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            666666653333344555566666666655 44444221  223344444444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.21  E-value=4.9e-11  Score=101.77  Aligned_cols=135  Identities=19%  Similarity=0.201  Sum_probs=68.9

Q ss_pred             CCccEEEeeCCCCcc--ccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEeccccccccCCCCCCccceeEee
Q 011033          269 GQLQEIEIWECENLV--SFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGGELPSLEEDGLPTNLHSLHIW  346 (495)
Q Consensus       269 ~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~l~~~~~~~~~~~L~~L~l~  346 (495)
                      ++|++|++++| .+.  .++..+..+++|+.|++++|. ++.+ ..+..++                     +|++|+++
T Consensus        24 ~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~---------------------~L~~L~Ls   79 (168)
T 2ell_A           24 AAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLP---------------------KLKKLELS   79 (168)
T ss_dssp             TSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCS---------------------SCCEEEEE
T ss_pred             ccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCC---------------------CCCEEECc
Confidence            55566666655 233  444444455555555555554 3333 3344444                     44444444


Q ss_pred             ccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccccc----ccccCC
Q 011033          347 GNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS----SIVDLQ  422 (495)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~----~~~~~~  422 (495)
                      +|.... ..+.   .+.++++|+.|++++|  .+..++...     .+..+++|+.|++++ +.++.++.    .+..++
T Consensus        80 ~N~l~~-~~~~---~~~~l~~L~~L~Ls~N--~l~~~~~~~-----~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~  147 (168)
T 2ell_A           80 ENRIFG-GLDM---LAEKLPNLTHLNLSGN--KLKDISTLE-----PLKKLECLKSLDLFN-CEVTNLNDYRESVFKLLP  147 (168)
T ss_dssp             SCCCCS-CCCH---HHHHCTTCCEEECBSS--SCCSSGGGG-----GGSSCSCCCEEECCS-SGGGTSTTHHHHHHTTCS
T ss_pred             CCcCch-HHHH---HHhhCCCCCEEeccCC--ccCcchhHH-----HHhcCCCCCEEEeeC-CcCcchHHHHHHHHHhCc
Confidence            444211 1111   2344666666666666  455443200     012345666666666 45555554    566677


Q ss_pred             CCCeEeccCCCCCCCCCC
Q 011033          423 NLTHLNLVDCPKLKYFPE  440 (495)
Q Consensus       423 ~L~~L~l~~c~~l~~l~~  440 (495)
                      +|++|++++|. +..+|.
T Consensus       148 ~L~~L~l~~n~-~~~~~~  164 (168)
T 2ell_A          148 QLTYLDGYDRE-DQEAPD  164 (168)
T ss_dssp             SCCEETTEETT-SCBCCS
T ss_pred             cCcEecCCCCC-hhhccc
Confidence            77777777753 555554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.21  E-value=9.9e-11  Score=111.58  Aligned_cols=79  Identities=13%  Similarity=0.125  Sum_probs=40.2

Q ss_pred             CCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccccc-ccccCCCCC-eEeccCCCCCCCCCCCC
Q 011033          365 FSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-SIVDLQNLT-HLNLVDCPKLKYFPEKG  442 (495)
Q Consensus       365 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~-~L~l~~c~~l~~l~~~~  442 (495)
                      +++|+.|++++|  .+..++...      |..+++|+.+++.+ + ++.|+. .+.+|++|+ ++++.+  +++.|+...
T Consensus       225 ~~~L~~l~L~~n--~i~~I~~~a------F~~~~~L~~l~l~~-n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~a  292 (329)
T 3sb4_A          225 MPNLVSLDISKT--NATTIPDFT------FAQKKYLLKIKLPH-N-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGA  292 (329)
T ss_dssp             CTTCCEEECTTB--CCCEECTTT------TTTCTTCCEEECCT-T-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTT
T ss_pred             cCCCeEEECCCC--CcceecHhh------hhCCCCCCEEECCc-c-cceehHHHhhCChhccEEEEEcc--cceEEchhh
Confidence            455555555554  444444422      33445555555555 1 555554 455555555 555555  355555433


Q ss_pred             C--ccccceeeccCC
Q 011033          443 L--PSSLLQLSIYRC  455 (495)
Q Consensus       443 ~--~~~L~~L~l~~c  455 (495)
                      +  +++|+.+++.++
T Consensus       293 F~~c~~L~~l~l~~n  307 (329)
T 3sb4_A          293 FMGCDNLRYVLATGD  307 (329)
T ss_dssp             TTTCTTEEEEEECSS
T ss_pred             hhCCccCCEEEeCCC
Confidence            3  455555555433

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.19  E-value=5.1e-11  Score=102.51  Aligned_cols=136  Identities=14%  Similarity=0.086  Sum_probs=104.7

Q ss_pred             HHhhcCccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCC
Q 011033            7 IWKSHNELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKC   86 (495)
Q Consensus         7 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~   86 (495)
                      -.+.....+..+++|++|++++ +.++.++.      +..+   +++|++|++++| .+..+ ..+..+++|++|++++|
T Consensus         7 ~~i~~~~~~~~~~~L~~L~l~~-n~l~~i~~------~~~~---~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N   74 (176)
T 1a9n_A            7 ELIEQAAQYTNAVRDRELDLRG-YKIPVIEN------LGAT---LDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNN   74 (176)
T ss_dssp             HHHHTSCEEECTTSCEEEECTT-SCCCSCCC------GGGG---TTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSS
T ss_pred             HHHHHHHhcCCcCCceEEEeeC-CCCchhHH------hhhc---CCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCC
Confidence            3444556677899999999999 57887744      4443   259999999998 55666 46889999999999998


Q ss_pred             CCCCCCCC--CCCCCCCcEEEEeCCCCCCcccc--ccccCCCCCccEEecccCcccccccc-----ccCCCCccEEEecc
Q 011033           87 SSLVSFPE--VALPSKLKIIEIEGCDALKSLPE--AWMCDTNSSLETLYIEHCRTLTYLAG-----VQLPRSLKRLDILS  157 (495)
Q Consensus        87 ~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~~~~-----~~~~~~L~~L~l~~  157 (495)
                       .++.+|+  +..+++|++|++++|. +..+|.  .+...  ++|+.|++++|. ++.++.     ...+++|+.|++++
T Consensus        75 -~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l--~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~  149 (176)
T 1a9n_A           75 -RICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASL--KSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQK  149 (176)
T ss_dssp             -CCCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGC--TTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred             -cccccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcC--CCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCc
Confidence             6777775  4789999999999987 577776  55544  889999999864 555554     35678888888877


Q ss_pred             CC
Q 011033          158 CD  159 (495)
Q Consensus       158 ~~  159 (495)
                      +.
T Consensus       150 n~  151 (176)
T 1a9n_A          150 VK  151 (176)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.15  E-value=8.3e-11  Score=98.11  Aligned_cols=58  Identities=21%  Similarity=0.246  Sum_probs=27.2

Q ss_pred             CCCCccceEEeeccccccccch--hhhccccccCCCCCCCceeeeccccccccccc----ccccCCCCCeEecc
Q 011033          363 HRFSSLRHLTIEGCDDDMVSFP--LEDKRLGTALPLPASLTSLRIVDFPNLERLSS----SIVDLQNLTHLNLV  430 (495)
Q Consensus       363 ~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~----~~~~~~~L~~L~l~  430 (495)
                      .++++|++|++++|  .+..++  ...       ..+++|+.|++++ +.++.++.    .+..+++|++|+++
T Consensus        85 ~~l~~L~~L~ls~N--~i~~~~~~~~~-------~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           85 EKCPNLTHLNLSGN--KIKDLSTIEPL-------KKLENLKSLDLFN-CEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             HHCTTCCEEECTTS--CCCSHHHHGGG-------GGCTTCCEEECTT-CGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             hhCCCCCEEECCCC--cCCChHHHHHH-------hhCCCCCEEeCcC-CcccchHHHHHHHHHHCCCcccccCC
Confidence            34555555555555  344332  111       1234555555555 34444443    34555555555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.14  E-value=2.1e-13  Score=139.24  Aligned_cols=105  Identities=15%  Similarity=0.080  Sum_probs=53.5

Q ss_pred             cceeEecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCC
Q 011033          319 LQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLP  397 (495)
Q Consensus       319 L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  397 (495)
                      |+.|++++ .+..+|..+.+++|+.|++++|.. . .++.   .+.++++|+.|++++|  .+..+|. .       ..+
T Consensus       443 L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l-~-~lp~---~~~~l~~L~~L~Ls~N--~l~~lp~-l-------~~l  507 (567)
T 1dce_A          443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRL-R-ALPP---ALAALRCLEVLQASDN--ALENVDG-V-------ANL  507 (567)
T ss_dssp             CSEEECTTSCCSSCCCGGGGTTCCEEECCSSCC-C-CCCG---GGGGCTTCCEEECCSS--CCCCCGG-G-------TTC
T ss_pred             ceEEEecCCCCCCCcCccccccCcEeecCcccc-c-ccch---hhhcCCCCCEEECCCC--CCCCCcc-c-------CCC
Confidence            44444444 333333333344444455554442 2 2222   3555666666666665  5555542 2       244


Q ss_pred             CCCceeeeccccccccc--ccccccCCCCCeEeccCCCCCCCCCC
Q 011033          398 ASLTSLRIVDFPNLERL--SSSIVDLQNLTHLNLVDCPKLKYFPE  440 (495)
Q Consensus       398 ~~L~~L~l~~~~~l~~l--~~~~~~~~~L~~L~l~~c~~l~~l~~  440 (495)
                      ++|+.|++++ +.++.+  |..+..+++|++|++++| .++.+|.
T Consensus       508 ~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~  550 (567)
T 1dce_A          508 PRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEG  550 (567)
T ss_dssp             SSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSS
T ss_pred             CCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCcc
Confidence            5666666666 455555  556666666666666663 3555444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.13  E-value=6.6e-09  Score=101.32  Aligned_cols=257  Identities=14%  Similarity=0.212  Sum_probs=148.4

Q ss_pred             ccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccc-cccCCCCccEEEEeCCCCCCCCC
Q 011033           15 LQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQ-SSLSLSSLREIEIYKCSSLVSFP   93 (495)
Q Consensus        15 ~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~l~   93 (495)
                      +..+..++.+.+.+  .++.|...    +|.+     .+|+.+++..+  +..++. +|..+ +|+.+.+..  .++.++
T Consensus       109 ~~~~~~l~~i~ip~--~i~~I~~~----aF~~-----~~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~--~l~~I~  172 (401)
T 4fdw_A          109 TEILKGYNEIILPN--SVKSIPKD----AFRN-----SQIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS--TLEQLK  172 (401)
T ss_dssp             EEECSSCSEEECCT--TCCEECTT----TTTT-----CCCSEEECCTT--CCEECTTTTTTC-CCCEEECCT--TCCEEC
T ss_pred             EEecCCccEEEECC--ccCEehHh----hccc-----CCccEEEeCCC--ccEECHHhcCCC-CceEEEeCC--CccEeh
Confidence            44456677777766  46666664    4443     35777777653  455543 35553 577777765  466665


Q ss_pred             C--CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc--cCCCCccEEEeccCCCccccccccc
Q 011033           94 E--VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTVEEG  169 (495)
Q Consensus        94 ~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~  169 (495)
                      .  +..|.+|+.+++.++. +..++...+..  .+|+.+.+..  .++.++..  ..+++|+.+.+..  +++.+  ...
T Consensus       173 ~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~--~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~--~l~~I--~~~  243 (401)
T 4fdw_A          173 EDIFYYCYNLKKADLSKTK-ITKLPASTFVY--AGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE--NVSTI--GQE  243 (401)
T ss_dssp             SSTTTTCTTCCEEECTTSC-CSEECTTTTTT--CCCSEEECCT--TCCEECTTTTTTCTTCCCEECCT--TCCEE--CTT
T ss_pred             HHHhhCcccCCeeecCCCc-ceEechhhEee--cccCEEEeCC--chheehhhHhhCCCCCCEEecCC--CccCc--ccc
Confidence            4  6777788888887755 56666655543  6777777764  25555544  3345566555543  23333  111


Q ss_pred             cccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcE
Q 011033          170 IQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLET  249 (495)
Q Consensus       170 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  249 (495)
                      .           +..                                    .+|+.+.+. +.....-..+|..+++|+.
T Consensus       244 a-----------F~~------------------------------------~~L~~i~lp-~~i~~I~~~aF~~c~~L~~  275 (401)
T 4fdw_A          244 A-----------FRE------------------------------------SGITTVKLP-NGVTNIASRAFYYCPELAE  275 (401)
T ss_dssp             T-----------TTT------------------------------------CCCSEEEEE-TTCCEECTTTTTTCTTCCE
T ss_pred             c-----------ccc------------------------------------CCccEEEeC-CCccEEChhHhhCCCCCCE
Confidence            1           001                                    234555553 2222222335667777777


Q ss_pred             EeeeCCCCC----Ccc-cccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEEEecCcccccccc-ccccCCCCccee
Q 011033          250 INISGCENL----KIL-PSGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLRIYGCERLEALP-KGLHNLTSLQQL  322 (495)
Q Consensus       250 L~l~~~~~~----~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L  322 (495)
                      +.+.++...    ..+ ...|.+|++|+.+++..  .++.++. .+..|++|+.+.+..+  ++.++ ..|.++ +|+.+
T Consensus       276 l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l  350 (401)
T 4fdw_A          276 VTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEV  350 (401)
T ss_dssp             EEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEE
T ss_pred             EEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEE
Confidence            777664221    123 34567777888887763  3566654 5566777888887543  55553 366777 78888


Q ss_pred             Eecc-ccccccCC---CCCCccceeEeeccC
Q 011033          323 TIGG-ELPSLEED---GLPTNLHSLHIWGNM  349 (495)
Q Consensus       323 ~l~~-~l~~~~~~---~~~~~L~~L~l~~~~  349 (495)
                      .+.+ .+..++..   +.+..++.|++-.+.
T Consensus       351 ~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          351 KVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             EECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             EEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            8877 44444333   233567778777654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.11  E-value=6.8e-11  Score=98.63  Aligned_cols=80  Identities=15%  Similarity=0.150  Sum_probs=39.3

Q ss_pred             CCCcEEeeeCCCCC-CcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeE
Q 011033          245 TSLETINISGCENL-KILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLT  323 (495)
Q Consensus       245 ~~L~~L~l~~~~~~-~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  323 (495)
                      ++|+.|++++|... ..+|..+..+++|+.|++++| .++.+ ..+..+++|+.|++++|.....+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            45555555554322 244444555556666666555 33333 3344455566666655543332444444445555554


Q ss_pred             ecc
Q 011033          324 IGG  326 (495)
Q Consensus       324 l~~  326 (495)
                      +++
T Consensus        95 ls~   97 (149)
T 2je0_A           95 LSG   97 (149)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            444

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.10  E-value=8.5e-09  Score=100.77  Aligned_cols=53  Identities=15%  Similarity=0.044  Sum_probs=28.8

Q ss_pred             cccceeecccccCCcccc-ccccCCCCccEEEEeCCCCCCCCCC--CCCCCCCcEEEEeC
Q 011033           52 CRLEYLRLSYCEGLVKLP-QSSLSLSSLREIEIYKCSSLVSFPE--VALPSKLKIIEIEG  108 (495)
Q Consensus        52 ~~L~~L~ls~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~  108 (495)
                      .+|+.+.+..  .+..++ .+|.+|++|+.+++..  .++.++.  +..+.+|+.+.+..
T Consensus        71 ~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p~  126 (394)
T 4fs7_A           71 RKVTEIKIPS--TVREIGEFAFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLPL  126 (394)
T ss_dssp             TTEEEEECCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCCT
T ss_pred             CCceEEEeCC--CccCcchhHhhCCCCCcEEEeCC--CceEccchhhcccccchhhcccC
Confidence            6666666653  234443 2456666666666654  2444443  55566666555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.03  E-value=1.7e-09  Score=94.34  Aligned_cols=119  Identities=13%  Similarity=0.118  Sum_probs=87.1

Q ss_pred             cEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC--CCCCC
Q 011033           22 RRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--VALPS   99 (495)
Q Consensus        22 ~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~   99 (495)
                      +.+++++ +.++.+|.+     +      +++|++|++++| .+..+|..+..+++|++|++++| .++.++.  +..++
T Consensus        13 ~~l~~~~-~~l~~ip~~-----~------~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~   78 (193)
T 2wfh_A           13 TVVRCSN-KGLKVLPKG-----I------PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMT   78 (193)
T ss_dssp             TEEECTT-SCCSSCCSC-----C------CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred             CEEEcCC-CCCCcCCCC-----C------CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCC
Confidence            6778887 677877764     2      267888888887 55778777888888888888887 6666664  77888


Q ss_pred             CCcEEEEeCCCCCCcccc-ccccCCCCCccEEecccCccccccccc--cCCCCccEEEeccC
Q 011033          100 KLKIIEIEGCDALKSLPE-AWMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSC  158 (495)
Q Consensus       100 ~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~  158 (495)
                      +|++|++++|. +..++. .+...  ++|+.|++++| .++.++..  ..+++|+.|+++++
T Consensus        79 ~L~~L~Ls~N~-l~~i~~~~f~~l--~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           79 QLLTLILSYNR-LRCIPPRTFDGL--KSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             TCCEEECCSSC-CCBCCTTTTTTC--TTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCEEECCCCc-cCEeCHHHhCCC--CCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCC
Confidence            88888888887 444544 44444  78888888884 56666653  45678888888774

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.02  E-value=3.7e-10  Score=97.05  Aligned_cols=56  Identities=20%  Similarity=0.237  Sum_probs=26.1

Q ss_pred             CCceeeeccccccccccc--ccccCCCCCeEeccCCCCCCCCCCC-----CCccccceeeccCCc
Q 011033          399 SLTSLRIVDFPNLERLSS--SIVDLQNLTHLNLVDCPKLKYFPEK-----GLPSSLLQLSIYRCP  456 (495)
Q Consensus       399 ~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L~l~~c~  456 (495)
                      +|+.|++++ +.++.+|.  .+..+++|++|++++|+ +..+|..     ..+++|++|++++|+
T Consensus        89 ~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           89 DLTELILTN-NSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             TCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            444444444 33444443  34455555555555532 4444431     124555555555554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.00  E-value=6.3e-08  Score=94.54  Aligned_cols=190  Identities=16%  Similarity=0.148  Sum_probs=109.3

Q ss_pred             hcCCCCCCcEEeeeCCCCCCcc-cccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCcccccccc-ccccCCC
Q 011033          240 RLDNNTSLETINISGCENLKIL-PSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALP-KGLHNLT  317 (495)
Q Consensus       240 ~~~~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~  317 (495)
                      .|..+.+|+.+.+..+  +..+ ..++.++..|+.+.+..+  ...+......+.+|+.+.+...  .+.+. ..+..+.
T Consensus       180 ~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~  253 (394)
T 4fs7_A          180 LFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNIIIPDS--FTELGKSVFYGCT  253 (394)
T ss_dssp             TTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEEEECTT--CCEECSSTTTTCS
T ss_pred             cccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC--ceEeehhhcccCCCceEEECCC--ceecccccccccc
Confidence            4556666776666542  3333 234556666666666543  2333444444556777766542  23332 2455667


Q ss_pred             CcceeEeccccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCC
Q 011033          318 SLQQLTIGGELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALP  395 (495)
Q Consensus       318 ~L~~L~l~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  395 (495)
                      +++.+.+...+..+...  ..++.++.+......     +..  ..+..+.+|+.+.+..+   +..+...      +|.
T Consensus       254 ~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~-----i~~--~~F~~~~~L~~i~l~~~---i~~I~~~------aF~  317 (394)
T 4fs7_A          254 DLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI-----VPE--KTFYGCSSLTEVKLLDS---VKFIGEE------AFE  317 (394)
T ss_dssp             SCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE-----ECT--TTTTTCTTCCEEEECTT---CCEECTT------TTT
T ss_pred             cceeEEcCCCcceeeccccccccccceeccCcee-----ecc--ccccccccccccccccc---cceechh------hhc
Confidence            77777766533222222  234555555544432     111  35667788888888663   4444442      234


Q ss_pred             CCCCCceeeeccccccccccc-ccccCCCCCeEeccCCCCCCCCCCCCC--ccccceeeccCC
Q 011033          396 LPASLTSLRIVDFPNLERLSS-SIVDLQNLTHLNLVDCPKLKYFPEKGL--PSSLLQLSIYRC  455 (495)
Q Consensus       396 ~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c  455 (495)
                      ..++|+.+++.+  .++.|+. .+.+|.+|+.+.+..  +++.|+...+  +++|+.+++...
T Consensus       318 ~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          318 SCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEGG
T ss_pred             CCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECCC
Confidence            556788888754  4777765 778888888888865  2777776544  678888877543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.99  E-value=1e-10  Score=123.17  Aligned_cols=109  Identities=17%  Similarity=0.184  Sum_probs=56.1

Q ss_pred             hhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCC
Q 011033          238 AERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLT  317 (495)
Q Consensus       238 ~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~  317 (495)
                      +..+..+++|+.|++++|. +..++..+..+++|++|++++| .++.+|..+..+++|+.|+|++|. ++.+|..+..++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~  293 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCF  293 (727)
T ss_dssp             -----CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGT
T ss_pred             hhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCC
Confidence            3345555556666665533 3345544555556666666555 344555545555556666665554 335555555555


Q ss_pred             CcceeEecc-ccccccCC-CCCCccceeEeeccC
Q 011033          318 SLQQLTIGG-ELPSLEED-GLPTNLHSLHIWGNM  349 (495)
Q Consensus       318 ~L~~L~l~~-~l~~~~~~-~~~~~L~~L~l~~~~  349 (495)
                      +|++|+|++ .+..+|.. +.+++|+.|++++|.
T Consensus       294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred             CCCEEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence            566665555 44454442 344555555555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.99  E-value=1.4e-09  Score=110.91  Aligned_cols=140  Identities=15%  Similarity=0.125  Sum_probs=83.5

Q ss_pred             ccccccccccEEe-cccccccccccchhhH-HHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCC
Q 011033           13 ELLQDICSLRRLT-ITSCPKLQSLVAEEEK-DQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLV   90 (495)
Q Consensus        13 ~~~~~~~~L~~L~-l~~c~~l~~i~~~~~~-~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~   90 (495)
                      +.++.+++|+.|+ ++. +.+..++.-.+. ..+..+  .+..|+.|++++| .+..+|. ++.+++|++|++++| .++
T Consensus       403 ~~l~~l~~L~~L~~l~~-n~~~~L~~l~l~~n~i~~l--~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N-~l~  476 (567)
T 1dce_A          403 ETLQYFSTLKAVDPMRA-AYLDDLRSKFLLENSVLKM--EYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHN-RLR  476 (567)
T ss_dssp             HHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHHHHHHH--HHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSS-CCC
T ss_pred             HHHHHHHhcccCcchhh-cccchhhhhhhhccccccc--CccCceEEEecCC-CCCCCcC-ccccccCcEeecCcc-ccc
Confidence            4456677777776 333 444433221000 012222  1135777777776 5566776 777777777777776 566


Q ss_pred             CCCC-CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCcccccc--ccc-cCCCCccEEEeccCCCcccc
Q 011033           91 SFPE-VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYL--AGV-QLPRSLKRLDILSCDNIRTL  164 (495)
Q Consensus        91 ~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~-~~~~~L~~L~l~~~~~l~~~  164 (495)
                      .+|. ++.+++|+.|++++|. +..+| .+..+  ++|+.|++++| .++.+  |.. ..+++|+.|+++++ .++..
T Consensus       477 ~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l--~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~  548 (567)
T 1dce_A          477 ALPPALAALRCLEVLQASDNA-LENVD-GVANL--PRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGN-SLCQE  548 (567)
T ss_dssp             CCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTC--SSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTS-GGGGS
T ss_pred             ccchhhhcCCCCCEEECCCCC-CCCCc-ccCCC--CCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCC-cCCCC
Confidence            6665 7777777777777776 44566 45444  77777777774 45554  333 56777777777774 44433

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.98  E-value=6.7e-08  Score=94.16  Aligned_cols=211  Identities=11%  Similarity=0.133  Sum_probs=117.1

Q ss_pred             CccEEEeecCCCchhh-hhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEEE
Q 011033          222 SLKSLFVWYCPKLESI-AERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLR  299 (495)
Q Consensus       222 ~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~  299 (495)
                      +|+.+.+..  .+..+ ..+|..+++|+.+++.. +.+..++.....+.+|+.+.+..  .++.++. .+..|++|+.++
T Consensus       158 ~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~  232 (401)
T 4fdw_A          158 TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIE  232 (401)
T ss_dssp             CCCEEECCT--TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEE
T ss_pred             CceEEEeCC--CccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEe
Confidence            355555542  22222 23566677777777765 34555544333356777777753  3555554 555666777777


Q ss_pred             ecCccccccccc-cccCCCCcceeEeccccccccCC--CCCCccceeEeeccCccch---hhhcccccCCCCCccceEEe
Q 011033          300 IYGCERLEALPK-GLHNLTSLQQLTIGGELPSLEED--GLPTNLHSLHIWGNMEIWK---SMIERGRGFHRFSSLRHLTI  373 (495)
Q Consensus       300 l~~~~~~~~~~~-~l~~l~~L~~L~l~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~l~~L~~L~l  373 (495)
                      +..+  ++.++. .|.+ .+|+.+.+...+..++..  ..+++|+++.+.++.....   .+..  ..+.+|++|+.+.+
T Consensus       233 l~~~--l~~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~--~aF~~c~~L~~l~l  307 (401)
T 4fdw_A          233 IPEN--VSTIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP--YCLEGCPKLARFEI  307 (401)
T ss_dssp             CCTT--CCEECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT--TTTTTCTTCCEECC
T ss_pred             cCCC--ccCcccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECH--HHhhCCccCCeEEe
Confidence            7653  444443 3444 567777765555544433  3356677777766542100   1111  35677777777777


Q ss_pred             eccccccccchhhhccccccCCCCCCCceeeeccccccccccc-ccccCCCCCeEeccCCCCCCCCCCCCC---ccccce
Q 011033          374 EGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-SIVDLQNLTHLNLVDCPKLKYFPEKGL---PSSLLQ  449 (495)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~---~~~L~~  449 (495)
                      .+   .+..+....      |..+++|+.+++..  +++.|+. .+.+| +|+++.+.++ .+..++...+   ...++.
T Consensus       308 ~~---~i~~I~~~a------F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~  374 (401)
T 4fdw_A          308 PE---SIRILGQGL------LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITV  374 (401)
T ss_dssp             CT---TCCEECTTT------TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCE
T ss_pred             CC---ceEEEhhhh------hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccE
Confidence            64   355544422      34456777777744  4666655 66677 7777777773 4555554322   245666


Q ss_pred             eeccCC
Q 011033          450 LSIYRC  455 (495)
Q Consensus       450 L~l~~c  455 (495)
                      +.+-..
T Consensus       375 l~vp~~  380 (401)
T 4fdw_A          375 IRVPAE  380 (401)
T ss_dssp             EEECGG
T ss_pred             EEeCHH
Confidence            666544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.98  E-value=2.6e-09  Score=93.09  Aligned_cols=98  Identities=15%  Similarity=0.126  Sum_probs=45.3

Q ss_pred             cEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccc--cCCCCCCccEEEeeCCCCcccc-CCCCCCCCCCcEEEe
Q 011033          224 KSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPS--GLHNLGQLQEIEIWECENLVSF-PEGGLPCAKLSKLRI  300 (495)
Q Consensus       224 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l  300 (495)
                      +.++++++. ++.+|..+.  .+++.|++++| .+..++.  .+..+++|++|++++| .++.+ +..+..+++|+.|++
T Consensus        11 ~~l~~s~~~-l~~ip~~~~--~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           11 TTVDCTGRG-LKEIPRDIP--LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TEEECTTSC-CSSCCSCCC--TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEEC
T ss_pred             CEEEcCCCC-cCcCccCCC--CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEEC
Confidence            455555333 233443222  25556666553 3333332  2455555666666555 33333 334445555555555


Q ss_pred             cCccccccccccccCCCCcceeEecc
Q 011033          301 YGCERLEALPKGLHNLTSLQQLTIGG  326 (495)
Q Consensus       301 ~~~~~~~~~~~~l~~l~~L~~L~l~~  326 (495)
                      ++|......+..+..+++|++|++++
T Consensus        86 s~N~l~~~~~~~~~~l~~L~~L~L~~  111 (192)
T 1w8a_A           86 GENKIKEISNKMFLGLHQLKTLNLYD  111 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCS
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCC
Confidence            55543222233344455555555444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.98  E-value=3.6e-09  Score=92.17  Aligned_cols=107  Identities=16%  Similarity=0.215  Sum_probs=84.6

Q ss_pred             CCCCccEEEeecCCCchhhhh-hcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCc
Q 011033          219 LPPSLKSLFVWYCPKLESIAE-RLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLS  296 (495)
Q Consensus       219 ~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~  296 (495)
                      +++++++|++++|......+. .+..+++|+.|++++|......+..+..+++|++|++++| .++.++. .+..+++|+
T Consensus        27 ~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~  105 (192)
T 1w8a_A           27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLK  105 (192)
T ss_dssp             CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCC
T ss_pred             CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCC
Confidence            446899999998866554443 4889999999999996544444778999999999999998 5666554 577889999


Q ss_pred             EEEecCccccccccccccCCCCcceeEecc
Q 011033          297 KLRIYGCERLEALPKGLHNLTSLQQLTIGG  326 (495)
Q Consensus       297 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  326 (495)
                      .|++++|......|..+..+++|++|++++
T Consensus       106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  135 (192)
T 1w8a_A          106 TLNLYDNQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             EEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred             EEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence            999999976656677788888888887766

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.96  E-value=3.5e-09  Score=92.30  Aligned_cols=104  Identities=18%  Similarity=0.223  Sum_probs=86.5

Q ss_pred             cccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCcccc-ccccCCCCccEEEEeCCCCCCCCCC--
Q 011033           18 ICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLP-QSSLSLSSLREIEIYKCSSLVSFPE--   94 (495)
Q Consensus        18 ~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~--   94 (495)
                      .++|++|++++ +.++.++.     .|..+    ++|++|++++|. +..++ ..+..+++|++|++++| .++.+++  
T Consensus        30 ~~~l~~L~L~~-n~i~~ip~-----~~~~l----~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~   97 (193)
T 2wfh_A           30 PRDVTELYLDG-NQFTLVPK-----ELSNY----KHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRT   97 (193)
T ss_dssp             CTTCCEEECCS-SCCCSCCG-----GGGGC----TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTT
T ss_pred             CCCCCEEECCC-CcCchhHH-----Hhhcc----cCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCC-ccCEeCHHH
Confidence            46899999999 68888885     48888    999999999984 45554 56899999999999998 6777765  


Q ss_pred             CCCCCCCcEEEEeCCCCCCccccc-cccCCCCCccEEecccCc
Q 011033           95 VALPSKLKIIEIEGCDALKSLPEA-WMCDTNSSLETLYIEHCR  136 (495)
Q Consensus        95 ~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~  136 (495)
                      +..+++|+.|++++|. +..+|.. +...  ++|+.|++.+++
T Consensus        98 f~~l~~L~~L~L~~N~-l~~~~~~~~~~l--~~L~~L~L~~N~  137 (193)
T 2wfh_A           98 FDGLKSLRLLSLHGND-ISVVPEGAFNDL--SALSHLAIGANP  137 (193)
T ss_dssp             TTTCTTCCEEECCSSC-CCBCCTTTTTTC--TTCCEEECCSSC
T ss_pred             hCCCCCCCEEECCCCC-CCeeChhhhhcC--ccccEEEeCCCC
Confidence            8889999999999988 6666664 4334  899999999864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.90  E-value=1.7e-09  Score=113.89  Aligned_cols=110  Identities=21%  Similarity=0.171  Sum_probs=68.7

Q ss_pred             CccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCC
Q 011033           12 NELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVS   91 (495)
Q Consensus        12 ~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~   91 (495)
                      .+.+..++.|+.|++++ +.+..++..     +..+    ++|++|+|++| .+..+|..++.+++|++|+|++| .++.
T Consensus       217 ~~~~~~l~~L~~L~Ls~-n~l~~l~~~-----~~~l----~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~  284 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSN-LQIFNISAN-----IFKY----DFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTS  284 (727)
T ss_dssp             -----CCCCCCEEECTT-SCCSCCCGG-----GGGC----CSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSS
T ss_pred             hhhhccCCCCcEEECCC-CCCCCCChh-----hcCC----CCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCc
Confidence            44456667777777777 456666654     4455    77777777776 44566666777777777777776 4556


Q ss_pred             CCC-CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCc
Q 011033           92 FPE-VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCR  136 (495)
Q Consensus        92 l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  136 (495)
                      +|. ++.+++|++|++++|. +..+|..+..+  ++|+.|++++|.
T Consensus       285 lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l--~~L~~L~L~~N~  327 (727)
T 4b8c_D          285 LPAELGSCFQLKYFYFFDNM-VTTLPWEFGNL--CNLQFLGVEGNP  327 (727)
T ss_dssp             CCSSGGGGTTCSEEECCSSC-CCCCCSSTTSC--TTCCCEECTTSC
T ss_pred             cChhhcCCCCCCEEECCCCC-CCccChhhhcC--CCccEEeCCCCc
Confidence            654 6667777777777765 55666665544  667777777653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.90  E-value=1.5e-07  Score=91.82  Aligned_cols=132  Identities=15%  Similarity=0.171  Sum_probs=87.4

Q ss_pred             hhcCccccccc-cccEEecccccccccccchhhHHHHhhhhhcccccceeecccc--cCCcccc-ccccCCCCccEEEEe
Q 011033            9 KSHNELLQDIC-SLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYC--EGLVKLP-QSSLSLSSLREIEIY   84 (495)
Q Consensus         9 ~~~~~~~~~~~-~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~--~~l~~l~-~~~~~l~~L~~L~l~   84 (495)
                      .....+|.++. .|+.+.+.+  .++.|...    +|.+.    .+|+.+.+..+  ..+..+. .+|..+.+|+.+.+.
T Consensus        53 ~Ig~~aF~~~~~~L~sI~iP~--svt~Ig~~----AF~~C----~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~  122 (394)
T 4gt6_A           53 KIGDRVFCNYKYVLTSVQIPD--TVTEIGSN----AFYNC----TSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPIL  122 (394)
T ss_dssp             EECTTTTTTCCSCCCEEEECT--TCCEECTT----TTTTC----TTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGG
T ss_pred             EcCHhhccCCCCcCEEEEECC--CeeEEhHH----HhhCC----ccCceEeecCCCCCeeeEechhhchhcccceeeccC
Confidence            34566777775 599999977  47888775    67776    99999999875  2345554 357788888887776


Q ss_pred             CCCCCCCCCC--CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc-cCCCCccEEEecc
Q 011033           85 KCSSLVSFPE--VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV-QLPRSLKRLDILS  157 (495)
Q Consensus        85 ~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~  157 (495)
                      .  .++.++.  +..+.+|+.+.+...  +..++...+ ..+.+|+.+.+..  .++.+... -...+|+.+.+..
T Consensus       123 ~--~~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F-~~c~~L~~i~~~~--~~~~I~~~aF~~~~l~~i~ip~  191 (394)
T 4gt6_A          123 D--SVTEIDSEAFHHCEELDTVTIPEG--VTSVADGMF-SYCYSLHTVTLPD--SVTAIEERAFTGTALTQIHIPA  191 (394)
T ss_dssp             T--TCSEECTTTTTTCTTCCEEECCTT--CCEECTTTT-TTCTTCCEEECCT--TCCEECTTTTTTCCCSEEEECT
T ss_pred             C--ccceehhhhhhhhcccccccccce--eeeecccce-ecccccccccccc--eeeEeccccccccceeEEEECC
Confidence            5  4666654  777889999988753  344444333 3347788888865  34555444 1234566666643

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.88  E-value=1.2e-11  Score=108.66  Aligned_cols=63  Identities=13%  Similarity=0.060  Sum_probs=32.4

Q ss_pred             ccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc
Q 011033          261 LPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG  326 (495)
Q Consensus       261 l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  326 (495)
                      +|..+..+++|++|++++| .++.++ .+..+++|+.|++++|. ++.+|..+..+++|++|++++
T Consensus        40 l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~  102 (198)
T 1ds9_A           40 MDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             CHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEE
T ss_pred             hhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcC
Confidence            3334555566666666655 344444 44445556666665553 334544444445555555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.87  E-value=2.1e-08  Score=85.97  Aligned_cols=103  Identities=22%  Similarity=0.217  Sum_probs=51.4

Q ss_pred             CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCccc-ccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEE
Q 011033          221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILP-SGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKL  298 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L  298 (495)
                      +++++|++++|......+..+..+++|++|++++| .+..++ ..+..+++|+.|++++| .++.++. .+..+++|+.|
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L  105 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKEL  105 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEE
Confidence            55666666655544333334555666666666654 333333 23455666666666665 3444443 23445556666


Q ss_pred             EecCccccccccc-cccCCCCcceeEecc
Q 011033          299 RIYGCERLEALPK-GLHNLTSLQQLTIGG  326 (495)
Q Consensus       299 ~l~~~~~~~~~~~-~l~~l~~L~~L~l~~  326 (495)
                      ++++|. ++.+|. .+..+++|++|++++
T Consensus       106 ~l~~N~-l~~~~~~~~~~l~~L~~L~l~~  133 (177)
T 2o6r_A          106 ALDTNQ-LKSVPDGIFDRLTSLQKIWLHT  133 (177)
T ss_dssp             ECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred             ECcCCc-ceEeCHHHhcCCcccCEEEecC
Confidence            665553 333333 233444444444433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.87  E-value=9.2e-09  Score=88.31  Aligned_cols=122  Identities=20%  Similarity=0.239  Sum_probs=86.7

Q ss_pred             cccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccc-cccCCCCccEEEEeCCCCCCCCCC--CC
Q 011033           20 SLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQ-SSLSLSSLREIEIYKCSSLVSFPE--VA   96 (495)
Q Consensus        20 ~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~l~~--~~   96 (495)
                      ..+.+++++ ++++.+|..     +      +++|++|++++|. +..++. .+..+++|++|++++| .++.++.  ++
T Consensus         8 ~~~~l~~~~-~~l~~~p~~-----~------~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~   73 (177)
T 2o6r_A            8 SGTEIRCNS-KGLTSVPTG-----I------PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFD   73 (177)
T ss_dssp             ETTEEECCS-SCCSSCCTT-----C------CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTT
T ss_pred             CCCEEEecC-CCCccCCCC-----C------CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHcc
Confidence            357788887 567777653     1      2678888888874 455553 4678888888888887 6666665  67


Q ss_pred             CCCCCcEEEEeCCCCCCccccc-cccCCCCCccEEecccCccccccccc--cCCCCccEEEeccCC
Q 011033           97 LPSKLKIIEIEGCDALKSLPEA-WMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCD  159 (495)
Q Consensus        97 ~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~  159 (495)
                      .+++|++|++++|. +..++.. +...  ++|++|++++| .++.++..  ..+++|+.|+++++.
T Consensus        74 ~l~~L~~L~l~~N~-l~~~~~~~~~~l--~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           74 KLTKLTILYLHENK-LQSLPNGVFDKL--TQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             TCTTCCEEECCSSC-CCCCCTTTTTTC--TTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCccCEEECCCCC-ccccCHHHhhCC--cccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence            78888888888877 4555554 3334  78888888885 56666654  457888888888853

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.82  E-value=6.9e-11  Score=103.78  Aligned_cols=122  Identities=17%  Similarity=0.185  Sum_probs=89.0

Q ss_pred             cccEEecccc-cccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC-CCC
Q 011033           20 SLRRLTITSC-PKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE-VAL   97 (495)
Q Consensus        20 ~L~~L~l~~c-~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~   97 (495)
                      +|+...+.+. +.++.++.     .+..+    ++|++|++++| .+..+| .+..+++|++|++++| .++.+|. +..
T Consensus        24 ~l~~~~l~~~~~~l~~l~~-----~~~~l----~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~   91 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDA-----TLSTL----KACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAV   91 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHH-----HHHHT----TTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHH
T ss_pred             chheeEeccccCcHhhhhH-----HHhcC----CCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-Ccccccchhhc
Confidence            3444444442 23444443     47888    99999999997 556677 6888999999999998 6777776 555


Q ss_pred             CCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCcccccccc---ccCCCCccEEEeccC
Q 011033           98 PSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAG---VQLPRSLKRLDILSC  158 (495)
Q Consensus        98 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~  158 (495)
                      +++|++|++++|. +..+| .+...  ++|+.|++++| .++.++.   ...+++|+.|+++++
T Consensus        92 ~~~L~~L~L~~N~-l~~l~-~~~~l--~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A           92 ADTLEELWISYNQ-IASLS-GIEKL--VNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             HHHCSEEEEEEEE-CCCHH-HHHHH--HHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred             CCcCCEEECcCCc-CCcCC-ccccC--CCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCC
Confidence            6889999999987 55566 45444  88999999985 4665443   367889999999886

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.78  E-value=3.5e-07  Score=89.25  Aligned_cols=111  Identities=14%  Similarity=0.132  Sum_probs=73.1

Q ss_pred             cccccchhhHHHHhhhhhccc-ccceeecccccCCcccc-ccccCCCCccEEEEeCC--CCCCCCCC--CCCCCCCcEEE
Q 011033           32 LQSLVAEEEKDQQQQLCELSC-RLEYLRLSYCEGLVKLP-QSSLSLSSLREIEIYKC--SSLVSFPE--VALPSKLKIIE  105 (495)
Q Consensus        32 l~~i~~~~~~~~~~~l~~~~~-~L~~L~ls~~~~l~~l~-~~~~~l~~L~~L~l~~~--~~l~~l~~--~~~~~~L~~L~  105 (495)
                      ++.|.+.    +|.+-    . .|+.+.+-.  .+..+. .+|.+|++|+.+.+..+  ..++.++.  +..+.+|+.+.
T Consensus        51 Vt~Ig~~----aF~~~----~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~  120 (394)
T 4gt6_A           51 VSKIGDR----VFCNY----KYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIP  120 (394)
T ss_dssp             EEEECTT----TTTTC----CSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCG
T ss_pred             eeEcCHh----hccCC----CCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeec
Confidence            5566554    45432    3 489999975  345554 45889999999999775  24666765  77788999887


Q ss_pred             EeCCCCCCccccccccCCCCCccEEecccCccccccccc--cCCCCccEEEecc
Q 011033          106 IEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILS  157 (495)
Q Consensus       106 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~  157 (495)
                      +.++  +..++...+ ..+.+|+.+.+..  .++.+...  ..+.+|+.+.+.+
T Consensus       121 ~~~~--~~~I~~~aF-~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~  169 (394)
T 4gt6_A          121 ILDS--VTEIDSEAF-HHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPD  169 (394)
T ss_dssp             GGTT--CSEECTTTT-TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT
T ss_pred             cCCc--cceehhhhh-hhhcccccccccc--eeeeecccceecccccccccccc
Confidence            7653  455554433 3348899999865  34555544  4566777777654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.77  E-value=2.4e-08  Score=85.28  Aligned_cols=100  Identities=18%  Similarity=0.186  Sum_probs=75.1

Q ss_pred             ccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC--CCCC
Q 011033           21 LRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--VALP   98 (495)
Q Consensus        21 L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~   98 (495)
                      -+.+++++ +.++.+|.+     +      +++|++|++++|...+..|..++.+++|++|++++| .++.+|.  +..+
T Consensus        14 ~~~l~~~~-n~l~~iP~~-----~------~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l   80 (174)
T 2r9u_A           14 QTLVNCQN-IRLASVPAG-----I------PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKL   80 (174)
T ss_dssp             SSEEECCS-SCCSSCCSC-----C------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred             CcEEEeCC-CCCCccCCC-----c------CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCc
Confidence            47788888 678888774     2      178899999998443334667888999999999987 7777776  5788


Q ss_pred             CCCcEEEEeCCCCCCccccc-cccCCCCCccEEecccCc
Q 011033           99 SKLKIIEIEGCDALKSLPEA-WMCDTNSSLETLYIEHCR  136 (495)
Q Consensus        99 ~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~  136 (495)
                      ++|++|++++|. +..+|.. +..+  ++|+.|++.+|+
T Consensus        81 ~~L~~L~L~~N~-l~~l~~~~~~~l--~~L~~L~L~~N~  116 (174)
T 2r9u_A           81 TQLTQLDLNDNH-LKSIPRGAFDNL--KSLTHIYLYNNP  116 (174)
T ss_dssp             TTCCEEECCSSC-CCCCCTTTTTTC--TTCSEEECCSSC
T ss_pred             chhhEEECCCCc-cceeCHHHhccc--cCCCEEEeCCCC
Confidence            899999999887 5566664 4444  788888888854

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.74  E-value=3.7e-08  Score=83.81  Aligned_cols=100  Identities=19%  Similarity=0.245  Sum_probs=76.7

Q ss_pred             cccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccc-cccccCCCCccEEEEeCCCCCCCCCC--CC
Q 011033           20 SLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKL-PQSSLSLSSLREIEIYKCSSLVSFPE--VA   96 (495)
Q Consensus        20 ~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~--~~   96 (495)
                      ..+++++++ +.++.+|.+     +      +++|++|++++|. +..+ |..+..+++|++|++++| .++.++.  +.
T Consensus        10 ~~~~l~~s~-n~l~~ip~~-----~------~~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~   75 (170)
T 3g39_A           10 SGTTVDCSG-KSLASVPTG-----I------PTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFD   75 (170)
T ss_dssp             ETTEEECTT-SCCSSCCSC-----C------CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTT
T ss_pred             CCCEEEeCC-CCcCccCcc-----C------CCCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCC-CcCccChhhcc
Confidence            467889998 678888764     3      2789999999984 4544 666888999999999997 6777776  67


Q ss_pred             CCCCCcEEEEeCCCCCCccccc-cccCCCCCccEEecccCc
Q 011033           97 LPSKLKIIEIEGCDALKSLPEA-WMCDTNSSLETLYIEHCR  136 (495)
Q Consensus        97 ~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~  136 (495)
                      .+++|++|++++|. +..++.. +..+  ++|+.|++++|+
T Consensus        76 ~l~~L~~L~L~~N~-l~~~~~~~~~~l--~~L~~L~L~~N~  113 (170)
T 3g39_A           76 KLTQLTQLSLNDNQ-LKSIPRGAFDNL--KSLTHIWLLNNP  113 (170)
T ss_dssp             TCTTCCEEECCSSC-CCCCCTTTTTTC--TTCCEEECCSSC
T ss_pred             CCCCCCEEECCCCc-cCEeCHHHhcCC--CCCCEEEeCCCC
Confidence            88999999999987 5566654 4444  788999998864

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.72  E-value=4.9e-06  Score=80.55  Aligned_cols=74  Identities=14%  Similarity=0.174  Sum_probs=45.9

Q ss_pred             cccceeecccccCCccccc-cccCCCCccEEEEeCCCCCCCCCC--CCCCCCCcEEEEeCCCCCCccccccccCCCCCcc
Q 011033           52 CRLEYLRLSYCEGLVKLPQ-SSLSLSSLREIEIYKCSSLVSFPE--VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLE  128 (495)
Q Consensus        52 ~~L~~L~ls~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~  128 (495)
                      .+|+.+.+..  .+..|+. +|..|.+|+.+.+..  .++.++.  +..+ +|+.+.+..  .+..++...+..  .+|+
T Consensus        46 ~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~--~~L~  116 (379)
T 4h09_A           46 DRISEVRVNS--GITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQG--TDLD  116 (379)
T ss_dssp             GGCSEEEECT--TEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTT--CCCS
T ss_pred             cCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECCc--eeeEeccceecc--CCcc
Confidence            7788888764  3455553 477888888888864  3666654  5555 566666653  244555444333  4677


Q ss_pred             EEeccc
Q 011033          129 TLYIEH  134 (495)
Q Consensus       129 ~L~l~~  134 (495)
                      .+.+..
T Consensus       117 ~i~lp~  122 (379)
T 4h09_A          117 DFEFPG  122 (379)
T ss_dssp             EEECCT
T ss_pred             cccCCC
Confidence            777754

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.58  E-value=3e-07  Score=78.17  Aligned_cols=83  Identities=18%  Similarity=0.292  Sum_probs=48.6

Q ss_pred             CCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccc-cCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcE
Q 011033          220 PPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPS-GLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSK  297 (495)
Q Consensus       220 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~  297 (495)
                      +++++.|++++|......+..+..+++|+.|++++| .+..++. .+..+++|++|++++| .++.++. .+..+++|+.
T Consensus        29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~  106 (170)
T 3g39_A           29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTH  106 (170)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred             CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCE
Confidence            356666666666555555555666666666666664 3444433 3456666666666666 4455544 3455566666


Q ss_pred             EEecCcc
Q 011033          298 LRIYGCE  304 (495)
Q Consensus       298 L~l~~~~  304 (495)
                      |++++|+
T Consensus       107 L~L~~N~  113 (170)
T 3g39_A          107 IWLLNNP  113 (170)
T ss_dssp             EECCSSC
T ss_pred             EEeCCCC
Confidence            6666654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.52  E-value=5.6e-07  Score=76.72  Aligned_cols=79  Identities=22%  Similarity=0.359  Sum_probs=35.7

Q ss_pred             CCCcEEeeeCCCCCCcc-cccCCCCCCccEEEeeCCCCccccCCC-CCCCCCCcEEEecCccccccccc-cccCCCCcce
Q 011033          245 TSLETINISGCENLKIL-PSGLHNLGQLQEIEIWECENLVSFPEG-GLPCAKLSKLRIYGCERLEALPK-GLHNLTSLQQ  321 (495)
Q Consensus       245 ~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~  321 (495)
                      ++|+.|++++|. +..+ +..+.++++|+.|++++| .++.++.. +..+++|+.|++++|. ++.+|. .+..+++|++
T Consensus        33 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~  109 (174)
T 2r9u_A           33 TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTH  109 (174)
T ss_dssp             TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSE
T ss_pred             CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc-cceeCHHHhccccCCCE
Confidence            455555555533 2222 344555555555555555 34444432 2344555555555543 233332 2444444444


Q ss_pred             eEecc
Q 011033          322 LTIGG  326 (495)
Q Consensus       322 L~l~~  326 (495)
                      |++++
T Consensus       110 L~L~~  114 (174)
T 2r9u_A          110 IYLYN  114 (174)
T ss_dssp             EECCS
T ss_pred             EEeCC
Confidence            44433

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.50  E-value=3.1e-05  Score=74.93  Aligned_cols=121  Identities=12%  Similarity=0.182  Sum_probs=77.9

Q ss_pred             ccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccc-cccCCCCccEEEEeCCCCCCCCC
Q 011033           15 LQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQ-SSLSLSSLREIEIYKCSSLVSFP   93 (495)
Q Consensus        15 ~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~l~   93 (495)
                      +....+|+.+.+..  .++.|.+.    +|.+.    .+|+.+++..+  +..++. +|..+ +|+.+.+..  .++.++
T Consensus        42 ~~~~~~i~~v~ip~--~vt~Ig~~----aF~~C----~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~  106 (379)
T 4h09_A           42 YKDRDRISEVRVNS--GITSIGEA----NFNSC----YNMTKVTVAST--VTSIGDGAFADT-KLQSYTGME--RVKKFG  106 (379)
T ss_dssp             GGGGGGCSEEEECT--TEEEECTT----TTTTC----TTCCEEEECTT--CCEECTTTTTTC-CCCEEEECT--TCCEEC
T ss_pred             cccccCCEEEEeCC--CccChHHH----HhhCC----CCCCEEEeCCc--ceEechhhhcCC-CCceEECCc--eeeEec
Confidence            45667899999987  68888875    67776    99999999753  566654 46676 688888865  466666


Q ss_pred             C--CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc--cCCCCccEEEecc
Q 011033           94 E--VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILS  157 (495)
Q Consensus        94 ~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~  157 (495)
                      .  +.. .+|+.+++.+.  +..+....+..  .+++.+.+..  .++.+...  ..+.+++.+.+..
T Consensus       107 ~~aF~~-~~L~~i~lp~~--~~~i~~~~F~~--~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~  167 (379)
T 4h09_A          107 DYVFQG-TDLDDFEFPGA--TTEIGNYIFYN--SSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSS  167 (379)
T ss_dssp             TTTTTT-CCCSEEECCTT--CCEECTTTTTT--CCCCEEEECT--TCCEECSCTTTTCTTCCEEEECT
T ss_pred             cceecc-CCcccccCCCc--ccccccccccc--ceeeeeeccc--eeeccccchhccccccccccccc
Confidence            5  444 47999998763  34444433322  4566666644  24444433  3345566655544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.42  E-value=2.5e-07  Score=77.81  Aligned_cols=90  Identities=16%  Similarity=0.207  Sum_probs=52.5

Q ss_pred             CccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccch--hhhccccccC-CCCCCCceeeeccccccccc
Q 011033          338 TNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFP--LEDKRLGTAL-PLPASLTSLRIVDFPNLERL  414 (495)
Q Consensus       338 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l  414 (495)
                      ..|++|++++|. +++....   .+.++++|++|++++| ..+...-  .-..     . ...++|++|+|++|+++++-
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~---~L~~~~~L~~L~L~~C-~~ItD~gL~~L~~-----~~~~~~~L~~L~Ls~C~~ITD~  130 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFD---HMEGLQYVEKIRLCKC-HYIEDGCLERLSQ-----LENLQKSMLEMEIISCGNVTDK  130 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGG---GGTTCSCCCEEEEESC-TTCCHHHHHHHHT-----CHHHHHHCCEEEEESCTTCCHH
T ss_pred             ceEeEEeCcCCC-ccHHHHH---HhcCCCCCCEEEeCCC-CccCHHHHHHHHh-----cccccCCCCEEEcCCCCcCCHH
Confidence            368888888887 5544444   4677888888888887 2222211  1000     0 00135777777777766653


Q ss_pred             cc-ccccCCCCCeEeccCCCCCCC
Q 011033          415 SS-SIVDLQNLTHLNLVDCPKLKY  437 (495)
Q Consensus       415 ~~-~~~~~~~L~~L~l~~c~~l~~  437 (495)
                      .. .+..+++|++|++++|+.++.
T Consensus       131 Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          131 GIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             HHHHHhcCCCCCEEECCCCCCCCc
Confidence            32 345667777777777766655

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.34  E-value=3.6e-07  Score=87.44  Aligned_cols=83  Identities=18%  Similarity=0.237  Sum_probs=43.0

Q ss_pred             hcCCCCCCcEEeeeCCCC----C-----CcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCcccccccc
Q 011033          240 RLDNNTSLETINISGCEN----L-----KILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALP  310 (495)
Q Consensus       240 ~~~~~~~L~~L~l~~~~~----~-----~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~  310 (495)
                      +...+++|+.|.+.....    +     ..+...+..+|+|+.|+++++..+ .++. + ..++|++|++..|.......
T Consensus       134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l  210 (362)
T 2ra8_A          134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVV  210 (362)
T ss_dssp             THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHH
T ss_pred             hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHH
Confidence            344567778777754211    0     112233455677888888776322 2222 1 25677777777664222111


Q ss_pred             ccc--cCCCCcceeEec
Q 011033          311 KGL--HNLTSLQQLTIG  325 (495)
Q Consensus       311 ~~l--~~l~~L~~L~l~  325 (495)
                      ..+  ..+|+|++|+|+
T Consensus       211 ~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          211 EDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHHHHSBCTTCCEEEEE
T ss_pred             HHHHHccCCCCcEEEEe
Confidence            122  245666666653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.33  E-value=8.6e-07  Score=84.84  Aligned_cols=99  Identities=22%  Similarity=0.156  Sum_probs=64.9

Q ss_pred             cEEecccccccccccchhhHHHHhhhhhcccccceeeccc-ccCCcccc-ccccCCCCccEEEEeCCCCCCCCCC--CCC
Q 011033           22 RRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSY-CEGLVKLP-QSSLSLSSLREIEIYKCSSLVSFPE--VAL   97 (495)
Q Consensus        22 ~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~-~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~--~~~   97 (495)
                      +.++.++.+.++.||.      +..+    ++|+.|+|++ | .+..++ ..|+.+++|++|+|++| .++.+++  +..
T Consensus        11 ~~v~~~~~n~l~~ip~------l~~~----~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~   78 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH------LPGA----ENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHF   78 (347)
T ss_dssp             SCEECCSSCCCTTTTT------SCSC----SCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGS
T ss_pred             CEEEcCCCCCCCccCC------CCCC----CCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcC
Confidence            3456666326666544      5555    7788888875 5 555555 45777888888888877 5665554  677


Q ss_pred             CCCCcEEEEeCCCCCCccccccccCCCCCccEEecccC
Q 011033           98 PSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHC  135 (495)
Q Consensus        98 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  135 (495)
                      +++|++|++++|. +..+|...+..  ..|+.|++.+|
T Consensus        79 l~~L~~L~l~~N~-l~~~~~~~~~~--~~L~~l~l~~N  113 (347)
T 2ifg_A           79 TPRLSRLNLSFNA-LESLSWKTVQG--LSLQELVLSGN  113 (347)
T ss_dssp             CSCCCEEECCSSC-CSCCCSTTTCS--CCCCEEECCSS
T ss_pred             CcCCCEEeCCCCc-cceeCHHHccc--CCceEEEeeCC
Confidence            7888888888876 55666554433  33777777764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.32  E-value=8.5e-07  Score=84.86  Aligned_cols=87  Identities=21%  Similarity=0.129  Sum_probs=72.0

Q ss_pred             ccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC
Q 011033           15 LQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE   94 (495)
Q Consensus        15 ~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~   94 (495)
                      +..+++|++|++++++.++.++++    .|.++    ++|+.|+|++|...+..|..|..+++|++|+|++| .++.+|.
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~----~~~~l----~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~   97 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELR----DLRGL----GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSW   97 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGG----GSCSC----CCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCS
T ss_pred             CCCCCCeeEEEccCCCCCCCcChh----Hhccc----cCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCH
Confidence            778899999999965789999875    68888    99999999998543444557899999999999998 7777775


Q ss_pred             --CCCCCCCcEEEEeCCCC
Q 011033           95 --VALPSKLKIIEIEGCDA  111 (495)
Q Consensus        95 --~~~~~~L~~L~l~~~~~  111 (495)
                        +..+. |+.|++.+|..
T Consensus        98 ~~~~~~~-L~~l~l~~N~~  115 (347)
T 2ifg_A           98 KTVQGLS-LQELVLSGNPL  115 (347)
T ss_dssp             TTTCSCC-CCEEECCSSCC
T ss_pred             HHcccCC-ceEEEeeCCCc
Confidence              44444 99999999873

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.24  E-value=5.9e-08  Score=93.59  Aligned_cols=105  Identities=16%  Similarity=0.106  Sum_probs=50.4

Q ss_pred             CCccEEEeecCCCchhhhh----hcC-CCCCCcEEeeeCCCCCCcc-cccCCCCCCccEEEeeCCCCccccC-----CCC
Q 011033          221 PSLKSLFVWYCPKLESIAE----RLD-NNTSLETINISGCENLKIL-PSGLHNLGQLQEIEIWECENLVSFP-----EGG  289 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~~~~~----~~~-~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~-----~~~  289 (495)
                      +.|+.|++++|........    .+. ..++|++|++++|.....- ......+++|++|++++| .+++..     ..+
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L  150 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLL  150 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHH
Confidence            4567777776665432222    222 2357777777775422111 111123456777777776 333211     111


Q ss_pred             -CCCCCCcEEEecCccccc----cccccccCCCCcceeEecc
Q 011033          290 -LPCAKLSKLRIYGCERLE----ALPKGLHNLTSLQQLTIGG  326 (495)
Q Consensus       290 -~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~  326 (495)
                       ...++|+.|++++|..-.    .++..+...++|++|++++
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~  192 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLH  192 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTT
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCC
Confidence             234467777777764211    1222334445555555544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.19  E-value=1.4e-06  Score=83.27  Aligned_cols=63  Identities=27%  Similarity=0.291  Sum_probs=38.5

Q ss_pred             hhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCC--CCCCCCCcEEEecC
Q 011033          237 IAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEG--GLPCAKLSKLRIYG  302 (495)
Q Consensus       237 ~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~~L~~L~l~~  302 (495)
                      +...+..+++|++|.+.++..+ .++. + .+++|++|++..|..-......  ...+|+|+.|+|+.
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~  228 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV  228 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred             HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence            3445667788999998876333 2333 3 3788999999876321111111  12567899998864

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.17  E-value=5.9e-08  Score=93.62  Aligned_cols=171  Identities=18%  Similarity=0.128  Sum_probs=80.4

Q ss_pred             CCCCcEEeeeCCCCCCc----ccccCC-CCCCccEEEeeCCCCccc--cCCCCCCCCCCcEEEecCccccccccccccCC
Q 011033          244 NTSLETINISGCENLKI----LPSGLH-NLGQLQEIEIWECENLVS--FPEGGLPCAKLSKLRIYGCERLEALPKGLHNL  316 (495)
Q Consensus       244 ~~~L~~L~l~~~~~~~~----l~~~~~-~l~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l  316 (495)
                      ++.|+.|++++|.....    +...+. ..++|++|++++|. ++.  +......+++|+.|++++|..-..-...+...
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            35677888877543211    111122 23577777777773 322  11222234467777777664211111111000


Q ss_pred             CCcceeEeccccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCC
Q 011033          317 TSLQQLTIGGELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPL  396 (495)
Q Consensus       317 ~~L~~L~l~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  396 (495)
                                    +  ....++|++|++++|..-..........+..+++|++|++++|  .+.....  ..+..++..
T Consensus       150 --------------L--~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N--~l~~~g~--~~L~~~L~~  209 (372)
T 3un9_A          150 --------------L--LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT--GLGDEGL--ELLAAQLDR  209 (372)
T ss_dssp             --------------H--HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS--SCHHHHH--HHHHHHGGG
T ss_pred             --------------H--HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC--CCCcHHH--HHHHHHHhc
Confidence                          0  0123456666666665222111111113455667777777776  3332110  000111123


Q ss_pred             CCCCceeeecccccccc-----cccccccCCCCCeEeccCCCCCCC
Q 011033          397 PASLTSLRIVDFPNLER-----LSSSIVDLQNLTHLNLVDCPKLKY  437 (495)
Q Consensus       397 ~~~L~~L~l~~~~~l~~-----l~~~~~~~~~L~~L~l~~c~~l~~  437 (495)
                      +++|+.|++++| .++.     +...+...++|++|++++|+ ++.
T Consensus       210 ~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~  253 (372)
T 3un9_A          210 NRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNE-LSS  253 (372)
T ss_dssp             CSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS-CCH
T ss_pred             CCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC-CCH
Confidence            456777777773 4443     33345566778888888754 443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.16  E-value=1.6e-06  Score=72.89  Aligned_cols=85  Identities=14%  Similarity=0.137  Sum_probs=40.0

Q ss_pred             CccEEEEeCCCCCCCCCC--CCCCCCCcEEEEeCCCCCCccccc-cccC--CCCCccEEecccCccccc--cccccCCCC
Q 011033           77 SLREIEIYKCSSLVSFPE--VALPSKLKIIEIEGCDALKSLPEA-WMCD--TNSSLETLYIEHCRTLTY--LAGVQLPRS  149 (495)
Q Consensus        77 ~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~-~~~~--~~~~L~~L~l~~~~~l~~--~~~~~~~~~  149 (495)
                      +|++|++++|. +++.+.  +..+++|++|++++|..+++..-. +...  .+++|++|++++|..++.  +.....+++
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            45555555553 433221  445555555555555544432211 1110  013456666666555544  222233456


Q ss_pred             ccEEEeccCCCcc
Q 011033          150 LKRLDILSCDNIR  162 (495)
Q Consensus       150 L~~L~l~~~~~l~  162 (495)
                      |+.|++++|..++
T Consensus       141 L~~L~L~~c~~It  153 (176)
T 3e4g_A          141 LKYLFLSDLPGVK  153 (176)
T ss_dssp             CCEEEEESCTTCC
T ss_pred             CCEEECCCCCCCC
Confidence            6666666665554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.70  E-value=1e-05  Score=73.32  Aligned_cols=66  Identities=18%  Similarity=0.097  Sum_probs=41.2

Q ss_pred             hcccccceeecccccCCc--cccccccCCCCccEEEEeCCCCCCCCCCCCCCC--CCcEEEEeCCCCCCcc
Q 011033           49 ELSCRLEYLRLSYCEGLV--KLPQSSLSLSSLREIEIYKCSSLVSFPEVALPS--KLKIIEIEGCDALKSL  115 (495)
Q Consensus        49 ~~~~~L~~L~ls~~~~l~--~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~--~L~~L~l~~~~~~~~~  115 (495)
                      ..+++|+.|+|++|....  .+|..+..+++|++|+|++| .+..+..+..+.  +|++|++++|+....+
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~  236 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLCDTF  236 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccCCcceEEccCCcCcccc
Confidence            345788888888874322  34445567788888888876 555554333333  7777777777744333

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.62  E-value=2.2e-05  Score=67.41  Aligned_cols=11  Identities=9%  Similarity=0.066  Sum_probs=5.7

Q ss_pred             CCccEEEeccC
Q 011033          148 RSLKRLDILSC  158 (495)
Q Consensus       148 ~~L~~L~l~~~  158 (495)
                      ++|+.|+++++
T Consensus       151 ~~L~~L~L~~n  161 (185)
T 1io0_A          151 TTLLKFGYHFT  161 (185)
T ss_dssp             SSCCEEECCCS
T ss_pred             CCcCEEeccCC
Confidence            45555555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.44  E-value=7.8e-05  Score=67.52  Aligned_cols=81  Identities=21%  Similarity=0.135  Sum_probs=58.4

Q ss_pred             cccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCC--CccEEEEeCCCCCCCCC
Q 011033           16 QDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLS--SLREIEIYKCSSLVSFP   93 (495)
Q Consensus        16 ~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~--~L~~L~l~~~~~l~~l~   93 (495)
                      ..+++|++|++++ +.++.++.  ++..+..+    ++|+.|+|++| .+..+.. +..++  +|++|++++|+....+|
T Consensus       167 ~~l~~L~~L~Ls~-N~l~~l~~--l~~~~~~l----~~L~~L~Ls~N-~i~~~~~-l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSN-NRLYRLDD--MSSIVQKA----PNLKILNLSGN-ELKSERE-LDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTT-SCCCCCGG--GTTHHHHS----TTCCEEECTTS-CCCSGGG-GGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCC-CCCCCCcc--chhHHhhC----CCCCEEECCCC-ccCCchh-hhhcccCCcceEEccCCcCccccC
Confidence            4689999999999 78887653  11245666    99999999998 5555532 44444  99999999996555454


Q ss_pred             C--------CCCCCCCcEEE
Q 011033           94 E--------VALPSKLKIIE  105 (495)
Q Consensus        94 ~--------~~~~~~L~~L~  105 (495)
                      .        +..+++|+.|+
T Consensus       238 ~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          238 DQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             SHHHHHHHHHHHCTTCCEES
T ss_pred             cchhHHHHHHHHCcccCeEC
Confidence            2        45677777775

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.74  E-value=0.00053  Score=58.68  Aligned_cols=117  Identities=6%  Similarity=0.043  Sum_probs=78.3

Q ss_pred             CccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCc----cccccccCCCCccEEEEeCCC
Q 011033           12 NELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLV----KLPQSSLSLSSLREIEIYKCS   87 (495)
Q Consensus        12 ~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~----~l~~~~~~l~~L~~L~l~~~~   87 (495)
                      ...+...+.|++|++++|..+.+-....+...+..    .++|++|+|++|..-.    .+...+...+.|++|+|++| 
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~----~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-  103 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKT----NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-  103 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTT----CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHh----CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-
Confidence            34566789999999999636654222211222333    4899999999985422    23444667789999999998 


Q ss_pred             CCCCCC------CCCCCCCCcEEEE--eCCCCCCc-----cccccccCCCCCccEEecccCc
Q 011033           88 SLVSFP------EVALPSKLKIIEI--EGCDALKS-----LPEAWMCDTNSSLETLYIEHCR  136 (495)
Q Consensus        88 ~l~~l~------~~~~~~~L~~L~l--~~~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~  136 (495)
                      .+++-+      .+...+.|++|++  ++|. ++.     +...+...  ++|++|++++|.
T Consensus       104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n--~~L~~L~L~~n~  162 (185)
T 1io0_A          104 FISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKN--TTLLKFGYHFTQ  162 (185)
T ss_dssp             CCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHC--SSCCEEECCCSS
T ss_pred             cCCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhC--CCcCEEeccCCC
Confidence            666432      1566788999999  7776 433     23333333  789999999863

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.32  E-value=0.057  Score=42.75  Aligned_cols=52  Identities=23%  Similarity=0.299  Sum_probs=36.8

Q ss_pred             eEEeeccccccc--cchhhhccccccCCCCCCCceeeeccccccccccc-ccccCCCCCeEeccCCC
Q 011033          370 HLTIEGCDDDMV--SFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-SIVDLQNLTHLNLVDCP  433 (495)
Q Consensus       370 ~L~l~~~~~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~  433 (495)
                      .++-++.  ++.  .+|..         .|++|+.|+|++ +.++.++. .+..+++|++|++++|+
T Consensus        12 ~v~Cs~~--~L~~~~vP~~---------lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRR--GLTWASLPTA---------FPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSS--CCCTTTSCSC---------CCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCC--CCccccCCCC---------CCcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence            4444454  555  66652         566788888888 77888876 56778888888888865

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.65  E-value=0.11  Score=41.11  Aligned_cols=52  Identities=19%  Similarity=0.160  Sum_probs=40.6

Q ss_pred             eeeeccccccc--ccccccccCCCCCeEeccCCCCCCCCCCCCC--ccccceeeccCCch
Q 011033          402 SLRIVDFPNLE--RLSSSIVDLQNLTHLNLVDCPKLKYFPEKGL--PSSLLQLSIYRCPL  457 (495)
Q Consensus       402 ~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~  457 (495)
                      .++-++ ..++  .+|..+.  ++|++|+|++ ++|+.++...+  +++|++|++.+||.
T Consensus        12 ~v~Cs~-~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGR-RGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCS-SCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCC-CCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence            455555 6677  7885443  5799999999 67999998654  78999999999973

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=93.64  E-value=0.046  Score=46.63  Aligned_cols=66  Identities=11%  Similarity=0.192  Sum_probs=33.4

Q ss_pred             HhhhhhcccccceeecccccCCcc-----ccccccCCCCccEEEEeCCCCCCCCCC------CCCCCCCcEEEEeCCC
Q 011033           44 QQQLCELSCRLEYLRLSYCEGLVK-----LPQSSLSLSSLREIEIYKCSSLVSFPE------VALPSKLKIIEIEGCD  110 (495)
Q Consensus        44 ~~~l~~~~~~L~~L~ls~~~~l~~-----l~~~~~~l~~L~~L~l~~~~~l~~l~~------~~~~~~L~~L~l~~~~  110 (495)
                      +..+-..-+.|+.|+|+++..+++     +...+..-+.|++|+|++| .+++-+.      +..-..|++|++++|.
T Consensus        33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~  109 (197)
T 1pgv_A           33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF  109 (197)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence            444333336666666665423331     2233445556666666665 4443221      2234556666666665

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=89.27  E-value=0.07  Score=45.48  Aligned_cols=13  Identities=23%  Similarity=0.297  Sum_probs=7.4

Q ss_pred             CCCCccEEEeeCC
Q 011033          267 NLGQLQEIEIWEC  279 (495)
Q Consensus       267 ~l~~L~~L~l~~~  279 (495)
                      +-+.|+.|+++++
T Consensus        39 ~n~~L~~L~L~~n   51 (197)
T 1pgv_A           39 DDTDLKEVNINNM   51 (197)
T ss_dssp             TCSSCCEEECTTC
T ss_pred             cCCCccEEECCCC
Confidence            3456666666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	495
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 1/129 (0%)

Query: 221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECE 280
            +L +L +      +           LE + +S    LK LP  +    Q   +   E  
Sbjct: 55  KNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMPKTLQELRVHENEIT 113

Query: 281 NLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGGELPSLEEDGLPTNL 340
            +      GL    + +L     +           +  L  + I     +    GLP +L
Sbjct: 114 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSL 173

Query: 341 HSLHIWGNM 349
             LH+ GN 
Sbjct: 174 TELHLDGNK 182

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	495
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.89
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.88
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.78
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.78
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.74
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.74
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.66
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.66
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.65
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.61
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.6
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.57
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.56
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.51
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.48
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.46
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.45
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.44
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.44
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.43
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.42
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.29
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.21
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.17
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.05
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.02
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.99
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.99
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.99
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.82
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.8
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.7
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.56
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.54
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.5
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.45
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.06
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.9
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.43
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.89
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.92

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.89  E-value=2.1e-21  Score=187.98  Aligned_cols=339  Identities=17%  Similarity=0.147  Sum_probs=200.0

Q ss_pred             cccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEe
Q 011033           52 CRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLY  131 (495)
Q Consensus        52 ~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  131 (495)
                      .+|++|+++++ .+.++. ++..+++|++|++++| .++++++++.+++|++|++++|. +..+++ +...  ++|+.|+
T Consensus        44 ~~l~~L~l~~~-~I~~l~-gl~~L~nL~~L~Ls~N-~l~~l~~l~~L~~L~~L~L~~n~-i~~i~~-l~~l--~~L~~L~  116 (384)
T d2omza2          44 DQVTTLQADRL-GIKSID-GVEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQ-IADITP-LANL--TNLTGLT  116 (384)
T ss_dssp             TTCCEEECCSS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GTTC--TTCCEEE
T ss_pred             CCCCEEECCCC-CCCCcc-ccccCCCCCEEeCcCC-cCCCCccccCCcccccccccccc-cccccc-cccc--ccccccc
Confidence            66777777775 445553 3666777777777776 56666667777777777777766 344433 2223  6677777


Q ss_pred             cccCccccccccccCCCCccEEEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccc
Q 011033          132 IEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATL  211 (495)
Q Consensus       132 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  211 (495)
                      +.++ .++.++.......+........ .+...  .....          ............. .....+          
T Consensus       117 ~~~~-~~~~~~~~~~~~~~~~~~~~~~-~l~~~--~~~~~----------~~~~~~~~~~~~~-~~~~~~----------  171 (384)
T d2omza2         117 LFNN-QITDIDPLKNLTNLNRLELSSN-TISDI--SALSG----------LTSLQQLSFGNQV-TDLKPL----------  171 (384)
T ss_dssp             CCSS-CCCCCGGGTTCTTCSEEEEEEE-EECCC--GGGTT----------CTTCSEEEEEESC-CCCGGG----------
T ss_pred             cccc-cccccccccccccccccccccc-ccccc--ccccc----------ccccccccccccc-chhhhh----------
Confidence            7653 3444433333334444433321 11111  00000          0000000000000 111111          


Q ss_pred             cccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCC
Q 011033          212 ESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLP  291 (495)
Q Consensus       212 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~  291 (495)
                            ...+.........+..  ........+++++.+.++++. +..++. ...+++|++|++++| .++.++ .+..
T Consensus       172 ------~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~l~l~~n~-i~~~~~-~~~~~~L~~L~l~~n-~l~~~~-~l~~  239 (384)
T d2omza2         172 ------ANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQ-ISDITP-LGILTNLDELSLNGN-QLKDIG-TLAS  239 (384)
T ss_dssp             ------TTCTTCCEEECCSSCC--CCCGGGGGCTTCSEEECCSSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGGG
T ss_pred             ------cccccccccccccccc--ccccccccccccceeeccCCc-cCCCCc-ccccCCCCEEECCCC-CCCCcc-hhhc
Confidence                  0001222222222221  122234566777888877743 444432 445677888888877 455544 3455


Q ss_pred             CCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccce
Q 011033          292 CAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRH  370 (495)
Q Consensus       292 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~  370 (495)
                      +++|+.+++++|. ++.++ .+..+++|++|++++ .+..+++....+.++.+.+.+|....  .    ..+..+++++.
T Consensus       240 l~~L~~L~l~~n~-l~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~--~----~~~~~~~~l~~  311 (384)
T d2omza2         240 LTNLTDLDLANNQ-ISNLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED--I----SPISNLKNLTY  311 (384)
T ss_dssp             CTTCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSC--C----GGGGGCTTCSE
T ss_pred             ccccchhccccCc-cCCCC-cccccccCCEeeccCcccCCCCcccccccccccccccccccc--c----cccchhcccCe
Confidence            6788888888875 45554 367778888888887 77666666667788888888776321  1    13667788899


Q ss_pred             EEeeccccccccchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCCCCCcccccee
Q 011033          371 LTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQL  450 (495)
Q Consensus       371 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L  450 (495)
                      |++++|  .+..++.-.        .+++|++|++++| .++.++ .+.++++|++|++++| +++.++....+++|++|
T Consensus       312 L~ls~n--~l~~l~~l~--------~l~~L~~L~L~~n-~l~~l~-~l~~l~~L~~L~l~~N-~l~~l~~l~~l~~L~~L  378 (384)
T d2omza2         312 LTLYFN--NISDISPVS--------SLTKLQRLFFANN-KVSDVS-SLANLTNINWLSAGHN-QISDLTPLANLTRITQL  378 (384)
T ss_dssp             EECCSS--CCSCCGGGG--------GCTTCCEEECCSS-CCCCCG-GGGGCTTCCEEECCSS-CCCBCGGGTTCTTCSEE
T ss_pred             EECCCC--CCCCCcccc--------cCCCCCEEECCCC-CCCCCh-hHcCCCCCCEEECCCC-cCCCChhhccCCCCCEe
Confidence            999988  666665422        4678999999995 788887 6888999999999885 58887765557899999


Q ss_pred             eccCC
Q 011033          451 SIYRC  455 (495)
Q Consensus       451 ~l~~c  455 (495)
                      +++++
T Consensus       379 ~L~~N  383 (384)
T d2omza2         379 GLNDQ  383 (384)
T ss_dssp             ECCCE
T ss_pred             eCCCC
Confidence            98875

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.88  E-value=8.2e-21  Score=183.70  Aligned_cols=340  Identities=18%  Similarity=0.216  Sum_probs=228.4

Q ss_pred             ccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCC
Q 011033           17 DICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVA   96 (495)
Q Consensus        17 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~   96 (495)
                      .+.+|++|++++ .++++++.      +.++    ++|++|++++| .+++++. ++++++|++|++++| .+..+++++
T Consensus        42 ~l~~l~~L~l~~-~~I~~l~g------l~~L----~nL~~L~Ls~N-~l~~l~~-l~~L~~L~~L~L~~n-~i~~i~~l~  107 (384)
T d2omza2          42 DLDQVTTLQADR-LGIKSIDG------VEYL----NNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNN-QIADITPLA  107 (384)
T ss_dssp             HHTTCCEEECCS-SCCCCCTT------GGGC----TTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGT
T ss_pred             HhCCCCEEECCC-CCCCCccc------cccC----CCCCEEeCcCC-cCCCCcc-ccCCccccccccccc-ccccccccc
Confidence            467899999999 57888732      7788    99999999998 6788875 899999999999998 677787899


Q ss_pred             CCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccccCCCCccEEEecc-CCCccccccccccccCCC
Q 011033           97 LPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILS-CDNIRTLTVEEGIQSSSS  175 (495)
Q Consensus        97 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~-~~~l~~~~~~~~~~~~~~  175 (495)
                      .+++|+.|+++++. ...++.... .  ..+.......+ .+............+...... ......+  ..       
T Consensus       108 ~l~~L~~L~~~~~~-~~~~~~~~~-~--~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------  173 (384)
T d2omza2         108 NLTNLTGLTLFNNQ-ITDIDPLKN-L--TNLNRLELSSN-TISDISALSGLTSLQQLSFGNQVTDLKPL--AN-------  173 (384)
T ss_dssp             TCTTCCEEECCSSC-CCCCGGGTT-C--TTCSEEEEEEE-EECCCGGGTTCTTCSEEEEEESCCCCGGG--TT-------
T ss_pred             cccccccccccccc-ccccccccc-c--ccccccccccc-cccccccccccccccccccccccchhhhh--cc-------
Confidence            99999999999877 444444322 1  34555555442 222222221111122111111 0111111  00       


Q ss_pred             CccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCC
Q 011033          176 SSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGC  255 (495)
Q Consensus       176 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  255 (495)
                              ........... ......             ......++++.+.++++......+  ...+++|++|++++|
T Consensus       174 --------~~~~~~~~~~~-~~~~~~-------------~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n  229 (384)
T d2omza2         174 --------LTTLERLDISS-NKVSDI-------------SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN  229 (384)
T ss_dssp             --------CTTCCEEECCS-SCCCCC-------------GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred             --------ccccccccccc-cccccc-------------cccccccccceeeccCCccCCCCc--ccccCCCCEEECCCC
Confidence                    00011111111 111110             111122678888888776554433  456788999999885


Q ss_pred             CCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCC
Q 011033          256 ENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED  334 (495)
Q Consensus       256 ~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~  334 (495)
                       .+..++ .+..+++|+.|++++| .+..++. +..+++|+.|+++++. +..++ .+..++.++.+.+.. .+..++..
T Consensus       230 -~l~~~~-~l~~l~~L~~L~l~~n-~l~~~~~-~~~~~~L~~L~l~~~~-l~~~~-~~~~~~~l~~l~~~~n~l~~~~~~  303 (384)
T d2omza2         230 -QLKDIG-TLASLTNLTDLDLANN-QISNLAP-LSGLTKLTELKLGANQ-ISNIS-PLAGLTALTNLELNENQLEDISPI  303 (384)
T ss_dssp             -CCCCCG-GGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSSCCSCCGGG
T ss_pred             -CCCCcc-hhhcccccchhccccC-ccCCCCc-ccccccCCEeeccCcc-cCCCC-cccccccccccccccccccccccc
Confidence             455553 5678899999999988 4555543 4566799999998875 45554 477888899999888 77777666


Q ss_pred             CCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccc
Q 011033          335 GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERL  414 (495)
Q Consensus       335 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l  414 (495)
                      ..++++++|++++|. +.+..     .+..+++|++|++++|  .+..++.-.        .+++|+.|++++ +.++.+
T Consensus       304 ~~~~~l~~L~ls~n~-l~~l~-----~l~~l~~L~~L~L~~n--~l~~l~~l~--------~l~~L~~L~l~~-N~l~~l  366 (384)
T d2omza2         304 SNLKNLTYLTLYFNN-ISDIS-----PVSSLTKLQRLFFANN--KVSDVSSLA--------NLTNINWLSAGH-NQISDL  366 (384)
T ss_dssp             GGCTTCSEEECCSSC-CSCCG-----GGGGCTTCCEEECCSS--CCCCCGGGG--------GCTTCCEEECCS-SCCCBC
T ss_pred             chhcccCeEECCCCC-CCCCc-----ccccCCCCCEEECCCC--CCCCChhHc--------CCCCCCEEECCC-CcCCCC
Confidence            778899999999986 33221     2678899999999998  777766422        467999999998 578887


Q ss_pred             ccccccCCCCCeEeccCC
Q 011033          415 SSSIVDLQNLTHLNLVDC  432 (495)
Q Consensus       415 ~~~~~~~~~L~~L~l~~c  432 (495)
                      + .+.++++|++|+++++
T Consensus       367 ~-~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         367 T-PLANLTRITQLGLNDQ  383 (384)
T ss_dssp             G-GGTTCTTCSEEECCCE
T ss_pred             h-hhccCCCCCEeeCCCC
Confidence            7 4889999999999884

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=2.8e-17  Score=153.33  Aligned_cols=118  Identities=15%  Similarity=0.180  Sum_probs=81.9

Q ss_pred             cccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccc-cccCCCCccEEEEeCCCCCCCCCC--CC
Q 011033           20 SLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQ-SSLSLSSLREIEIYKCSSLVSFPE--VA   96 (495)
Q Consensus        20 ~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~l~~--~~   96 (495)
                      .+++++-++ .+++.+|.+     +      ++++++|++++| .++.+|. +|.++++|++|++++| .+..+++  +.
T Consensus        11 ~~~~~~C~~-~~L~~lP~~-----l------~~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n-~~~~i~~~~f~   76 (305)
T d1xkua_          11 HLRVVQCSD-LGLEKVPKD-----L------PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINN-KISKISPGAFA   76 (305)
T ss_dssp             ETTEEECTT-SCCCSCCCS-----C------CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTT
T ss_pred             cCCEEEecC-CCCCccCCC-----C------CCCCCEEECcCC-cCCCcChhHhhccccccccccccc-cccccchhhhh
Confidence            466676666 568888774     3      277999999997 6677775 5888999999999998 4555543  77


Q ss_pred             CCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc--cCCCCccEEEecc
Q 011033           97 LPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILS  157 (495)
Q Consensus        97 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~  157 (495)
                      .+++|++|++++|. ++.+|..+.    ..++.|.+.++ .+..++..  .....+..+....
T Consensus        77 ~l~~L~~L~l~~n~-l~~l~~~~~----~~l~~L~~~~n-~l~~l~~~~~~~~~~~~~l~~~~  133 (305)
T d1xkua_          77 PLVKLERLYLSKNQ-LKELPEKMP----KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGT  133 (305)
T ss_dssp             TCTTCCEEECCSSC-CSBCCSSCC----TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCS
T ss_pred             CCCccCEecccCCc-cCcCccchh----hhhhhhhcccc-chhhhhhhhhhcccccccccccc
Confidence            88999999999987 677776543    56888888774 34444332  2334445555444

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.78  E-value=4.5e-19  Score=166.31  Aligned_cols=248  Identities=16%  Similarity=0.064  Sum_probs=130.4

Q ss_pred             ccceeecccccCCc--cccccccCCCCccEEEEeCCCCC-CCCCC-CCCCCCCcEEEEeCCCCCCccccccccCCCCCcc
Q 011033           53 RLEYLRLSYCEGLV--KLPQSSLSLSSLREIEIYKCSSL-VSFPE-VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLE  128 (495)
Q Consensus        53 ~L~~L~ls~~~~l~--~l~~~~~~l~~L~~L~l~~~~~l-~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~  128 (495)
                      +++.|+|+++...+  .+|..++++++|++|++++|+.+ +.+|. ++++++|++|++++|......+..+...  .+|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~--~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI--KTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC--TTCC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccch--hhhc
Confidence            56777777764333  46666777777777777653333 35654 6677777777777766444444444444  6677


Q ss_pred             EEecccCccccccccc-cCCCCccEEEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCC
Q 011033          129 TLYIEHCRTLTYLAGV-QLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNEL  207 (495)
Q Consensus       129 ~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  207 (495)
                      .+++.++.....+|.. ..++.++.++++++.....+  |..+.                                    
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~i--p~~~~------------------------------------  170 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI--PDSYG------------------------------------  170 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC--CGGGG------------------------------------
T ss_pred             ccccccccccccCchhhccCcccceeecccccccccc--ccccc------------------------------------
Confidence            7777765444444433 45566666666654222122  22221                                    


Q ss_pred             cccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCC
Q 011033          208 PATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPE  287 (495)
Q Consensus       208 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~  287 (495)
                                .+...++.+.+++|......+..+..+.. ..+++.++.....++..+..+++++.++++++. +...+.
T Consensus       171 ----------~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~-l~~~~~  238 (313)
T d1ogqa_         171 ----------SFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFDLG  238 (313)
T ss_dssp             ----------CCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEEEECCGGGCCTTSCCSEEECCSSE-ECCBGG
T ss_pred             ----------ccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccc-cccccc
Confidence                      01111233334333333333333333332 235555544444445555555666666665552 222222


Q ss_pred             CCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccc-cccCCCCCCccceeEeeccCccc
Q 011033          288 GGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELP-SLEEDGLPTNLHSLHIWGNMEIW  352 (495)
Q Consensus       288 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~-~~~~~~~~~~L~~L~l~~~~~~~  352 (495)
                      .+..+++|+.|++++|+....+|+.+..+++|++|++++ .+. .+|..+.+++|+.+++++|..+.
T Consensus       239 ~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred             ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCcccc
Confidence            344445666666666654445666666666666666666 443 44544555666666666666433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=1.2e-15  Score=145.02  Aligned_cols=314  Identities=26%  Similarity=0.289  Sum_probs=166.7

Q ss_pred             cccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEe
Q 011033           52 CRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLY  131 (495)
Q Consensus        52 ~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  131 (495)
                      .++++|+++++ .++.+|+.   .++|++|++++| .++++|.  .+.+|+.|++++|. +..++.-   .  +.|++|+
T Consensus        38 ~~l~~LdLs~~-~L~~lp~~---~~~L~~L~Ls~N-~l~~lp~--~~~~L~~L~l~~n~-l~~l~~l---p--~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNL-GLSSLPEL---PPHLESLVASCN-SLTELPE--LPQSLKSLLVDNNN-LKALSDL---P--PLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTS-CCSCCCSC---CTTCSEEECCSS-CCSSCCC--CCTTCCEEECCSSC-CSCCCSC---C--TTCCEEE
T ss_pred             cCCCEEEeCCC-CCCCCCCC---CCCCCEEECCCC-CCccccc--chhhhhhhhhhhcc-cchhhhh---c--ccccccc
Confidence            35666677665 44566642   356666677665 5666653  24466666666655 3344321   1  3467777


Q ss_pred             cccCccccccccccCCCCccEEEeccCCCccccccccccccCCCCccCcccCccccceeeecCCCCCcccccCCCCcccc
Q 011033          132 IEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATL  211 (495)
Q Consensus       132 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  211 (495)
                      ++++ .++.++....+++|+.|++.++ .+...  +..              ...+..+.+..+......          
T Consensus       105 L~~n-~l~~lp~~~~l~~L~~L~l~~~-~~~~~--~~~--------------~~~l~~l~~~~~~~~~~~----------  156 (353)
T d1jl5a_         105 VSNN-QLEKLPELQNSSFLKIIDVDNN-SLKKL--PDL--------------PPSLEFIAAGNNQLEELP----------  156 (353)
T ss_dssp             CCSS-CCSSCCCCTTCTTCCEEECCSS-CCSCC--CCC--------------CTTCCEEECCSSCCSSCC----------
T ss_pred             cccc-ccccccchhhhccceeeccccc-ccccc--ccc--------------cccccchhhccccccccc----------
Confidence            7664 4556665566667777776654 22222  111              112334443332111110          


Q ss_pred             cccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCC
Q 011033          212 ESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLP  291 (495)
Q Consensus       212 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~  291 (495)
                         .. ...+.++.+.+..+..... +.   .....+.+...+ ..+..++ ....++.|+.+++++| ....++.   .
T Consensus       157 ---~l-~~l~~l~~L~l~~n~~~~~-~~---~~~~~~~l~~~~-~~~~~~~-~~~~l~~L~~l~l~~n-~~~~~~~---~  222 (353)
T d1jl5a_         157 ---EL-QNLPFLTAIYADNNSLKKL-PD---LPLSLESIVAGN-NILEELP-ELQNLPFLTTIYADNN-LLKTLPD---L  222 (353)
T ss_dssp             ---CC-TTCTTCCEEECCSSCCSSC-CC---CCTTCCEEECCS-SCCSSCC-CCTTCTTCCEEECCSS-CCSSCCS---C
T ss_pred             ---cc-cccccceeccccccccccc-cc---cccccccccccc-ccccccc-cccccccccccccccc-ccccccc---c
Confidence               01 1125566666665543321 11   112233444433 3333343 3456778888888776 3333332   2


Q ss_pred             CCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccce
Q 011033          292 CAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRH  370 (495)
Q Consensus       292 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~  370 (495)
                      ..++..+.+.++.. ...+.   ..+.+...++.. ....+.  ..+......++..+.. .       .....+++|++
T Consensus       223 ~~~l~~~~~~~~~~-~~~~~---~~~~l~~~~~~~~~~~~l~--~l~~~~~~~~~~~~~~-~-------~~~~~~~~L~~  288 (353)
T d1jl5a_         223 PPSLEALNVRDNYL-TDLPE---LPQSLTFLDVSENIFSGLS--ELPPNLYYLNASSNEI-R-------SLCDLPPSLEE  288 (353)
T ss_dssp             CTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSCCSEES--CCCTTCCEEECCSSCC-S-------EECCCCTTCCE
T ss_pred             cccccccccccccc-ccccc---ccccccccccccccccccc--cccchhcccccccCcc-c-------cccccCCCCCE
Confidence            33566666666542 22222   223444444433 222221  1122333444444431 1       12344678899


Q ss_pred             EEeeccccccccchhhhccccccCCCCCCCceeeecccccccccccccccCCCCCeEeccCCCCCCCCCCCCCcccccee
Q 011033          371 LTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQL  450 (495)
Q Consensus       371 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L  450 (495)
                      |++++|  .+..++.          .+++|+.|++++ ++++.+|.   .+++|++|++++|+ ++.+|.  .+.+|+.|
T Consensus       289 L~Ls~N--~l~~lp~----------~~~~L~~L~L~~-N~L~~l~~---~~~~L~~L~L~~N~-L~~lp~--~~~~L~~L  349 (353)
T d1jl5a_         289 LNVSNN--KLIELPA----------LPPRLERLIASF-NHLAEVPE---LPQNLKQLHVEYNP-LREFPD--IPESVEDL  349 (353)
T ss_dssp             EECCSS--CCSCCCC----------CCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSSC-CSSCCC--CCTTCCEE
T ss_pred             EECCCC--ccCcccc----------ccCCCCEEECCC-CcCCcccc---ccCCCCEEECcCCc-CCCCCc--cccccCee
Confidence            999988  6777765          346899999988 57888874   34688999999975 888886  46678888


Q ss_pred             ecc
Q 011033          451 SIY  453 (495)
Q Consensus       451 ~l~  453 (495)
                      .+.
T Consensus       350 ~~~  352 (353)
T d1jl5a_         350 RMN  352 (353)
T ss_dssp             ECC
T ss_pred             ECc
Confidence            765

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.74  E-value=5.6e-18  Score=158.72  Aligned_cols=242  Identities=11%  Similarity=0.057  Sum_probs=157.4

Q ss_pred             cccEEecccccccc---cccchhhHHHHhhhhhcccccceeecccc-cCCccccccccCCCCccEEEEeCCCCCCCCCC-
Q 011033           20 SLRRLTITSCPKLQ---SLVAEEEKDQQQQLCELSCRLEYLRLSYC-EGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE-   94 (495)
Q Consensus        20 ~L~~L~l~~c~~l~---~i~~~~~~~~~~~l~~~~~~L~~L~ls~~-~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-   94 (495)
                      +++.|+++++ .+.   .||++     ++++    ++|++|+++++ ...+.+|..++++++|++|++++| .+..++. 
T Consensus        51 ~v~~L~L~~~-~l~g~~~lp~~-----l~~L----~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N-~l~~~~~~  119 (313)
T d1ogqa_          51 RVNNLDLSGL-NLPKPYPIPSS-----LANL----PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPD  119 (313)
T ss_dssp             CEEEEEEECC-CCSSCEECCGG-----GGGC----TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCG
T ss_pred             EEEEEECCCC-CCCCCCCCChH-----HhcC----ccccccccccccccccccccccccccccchhhhccc-cccccccc
Confidence            5999999995 454   46664     8999    99999999974 444589999999999999999998 5554443 


Q ss_pred             -CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc-cCCCCc-cEEEeccCCCccccccccccc
Q 011033           95 -VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV-QLPRSL-KRLDILSCDNIRTLTVEEGIQ  171 (495)
Q Consensus        95 -~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L-~~L~l~~~~~l~~~~~~~~~~  171 (495)
                       +..+.+|+.+++++|.....+|..+...  ++++.++++++.....+|.. ..+..+ +.+.++++ .++... +..+.
T Consensus       120 ~~~~~~~L~~l~l~~N~~~~~~p~~l~~l--~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n-~l~~~~-~~~~~  195 (313)
T d1ogqa_         120 FLSQIKTLVTLDFSYNALSGTLPPSISSL--PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKI-PPTFA  195 (313)
T ss_dssp             GGGGCTTCCEEECCSSEEESCCCGGGGGC--TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEEC-CGGGG
T ss_pred             cccchhhhcccccccccccccCchhhccC--cccceeeccccccccccccccccccccccccccccc-cccccc-ccccc
Confidence             7789999999999998778888888777  89999999997544455554 334443 56665553 333220 11110


Q ss_pred             cCCCCccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEe
Q 011033          172 SSSSSSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETIN  251 (495)
Q Consensus       172 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  251 (495)
                                  .                                    .....+++..+.....+|..+..+++++.++
T Consensus       196 ------------~------------------------------------l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~  227 (313)
T d1ogqa_         196 ------------N------------------------------------LNLAFVDLSRNMLEGDASVLFGSDKNTQKIH  227 (313)
T ss_dssp             ------------G------------------------------------CCCSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred             ------------c------------------------------------ccccccccccccccccccccccccccccccc
Confidence                        0                                    1122344444444445555556666666666


Q ss_pred             eeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc
Q 011033          252 ISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG  326 (495)
Q Consensus       252 l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  326 (495)
                      +.++..... +..+..+++|+.|++++|.....+|..+..+++|+.|++++|+....+|+ +..+++|+.+++++
T Consensus       228 ~~~~~l~~~-~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~  300 (313)
T d1ogqa_         228 LAKNSLAFD-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYAN  300 (313)
T ss_dssp             CCSSEECCB-GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCS
T ss_pred             ccccccccc-ccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCC
Confidence            666443322 23455566666666666633335666666666666666666654445553 45556666666655

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.74  E-value=2.8e-16  Score=146.39  Aligned_cols=128  Identities=14%  Similarity=0.114  Sum_probs=92.1

Q ss_pred             cccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCC
Q 011033           18 ICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVAL   97 (495)
Q Consensus        18 ~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~   97 (495)
                      .+++++|++++ +.++.+++.    .|.++    ++|++|++++|......|..+..+++|++|++++| .++.+|. ..
T Consensus        30 ~~~l~~L~Ls~-N~i~~l~~~----~f~~l----~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n-~l~~l~~-~~   98 (305)
T d1xkua_          30 PPDTALLDLQN-NKITEIKDG----DFKNL----KNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPE-KM   98 (305)
T ss_dssp             CTTCCEEECCS-SCCCCBCTT----TTTTC----TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCS-SC
T ss_pred             CCCCCEEECcC-CcCCCcChh----Hhhcc----ccccccccccccccccchhhhhCCCccCEecccCC-ccCcCcc-ch
Confidence            36899999999 689999875    58888    99999999998654444667999999999999998 7888874 45


Q ss_pred             CCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCcccccccc---ccCCCCccEEEeccC
Q 011033           98 PSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAG---VQLPRSLKRLDILSC  158 (495)
Q Consensus        98 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~  158 (495)
                      ...++.|.+.++. +..++..... ....+..++...+........   ...+++|+.+.+.++
T Consensus        99 ~~~l~~L~~~~n~-l~~l~~~~~~-~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n  160 (305)
T d1xkua_          99 PKTLQELRVHENE-ITKVRKSVFN-GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT  160 (305)
T ss_dssp             CTTCCEEECCSSC-CCBBCHHHHT-TCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred             hhhhhhhhccccc-hhhhhhhhhh-ccccccccccccccccccCCCccccccccccCccccccC
Confidence            6789999999977 5555544332 226677788776532221111   134556666666664

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.1e-15  Score=139.09  Aligned_cols=103  Identities=16%  Similarity=0.163  Sum_probs=76.9

Q ss_pred             cccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCcccc-ccccCCCCccEEEEeCCCCCCCCCC
Q 011033           16 QDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLP-QSSLSLSSLREIEIYKCSSLVSFPE   94 (495)
Q Consensus        16 ~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~   94 (495)
                      .....+.+++.++ .+++.||++     +.      +++++|+|++| .+..+| ..|.++++|++|++++| .++.++.
T Consensus         7 ~~~~~~~~v~C~~-~~L~~iP~~-----lp------~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~   72 (266)
T d1p9ag_           7 SKVASHLEVNCDK-RNLTALPPD-----LP------KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV   72 (266)
T ss_dssp             ECSTTCCEEECTT-SCCSSCCSC-----CC------TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC
T ss_pred             cccCCCeEEEccC-CCCCeeCcC-----cC------cCCCEEECcCC-cCCCcCHHHhhccccccccccccc-ccccccc
Confidence            3455677778887 678888764     32      67999999997 556665 45888999999999998 7888877


Q ss_pred             CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccC
Q 011033           95 VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHC  135 (495)
Q Consensus        95 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  135 (495)
                      ++.+++|++|++++|. +...+..+...  ++|+.|+++++
T Consensus        73 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~l--~~L~~L~l~~~  110 (266)
T d1p9ag_          73 DGTLPVLGTLDLSHNQ-LQSLPLLGQTL--PALTVLDVSFN  110 (266)
T ss_dssp             CSCCTTCCEEECCSSC-CSSCCCCTTTC--TTCCEEECCSS
T ss_pred             cccccccccccccccc-ccccccccccc--ccccccccccc
Confidence            7888889999998876 55555555444  66777777664

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2e-15  Score=137.42  Aligned_cols=110  Identities=24%  Similarity=0.188  Sum_probs=63.7

Q ss_pred             CCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEE
Q 011033          219 LPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKL  298 (495)
Q Consensus       219 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L  298 (495)
                      +++++++|++++|......+..|..+++|++|++++| .+..++. +..+++|++|++++| .++..+..+..+++|+.|
T Consensus        29 lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L  105 (266)
T d1p9ag_          29 LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV-DGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVL  105 (266)
T ss_dssp             CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC-CSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEE
T ss_pred             cCcCCCEEECcCCcCCCcCHHHhhccccccccccccc-ccccccc-ccccccccccccccc-cccccccccccccccccc
Confidence            4456777777766554444456667777777777764 4455542 455667777777766 455555555566666666


Q ss_pred             EecCccccccccccccCCCCcceeEecc-ccccc
Q 011033          299 RIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSL  331 (495)
Q Consensus       299 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~  331 (495)
                      ++++|......+..+..++++++|++++ .+..+
T Consensus       106 ~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l  139 (266)
T d1p9ag_         106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTL  139 (266)
T ss_dssp             ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC
T ss_pred             cccccccceeecccccccccccccccccccccee
Confidence            6666653333333444455555555544 44333

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.65  E-value=4e-14  Score=134.18  Aligned_cols=314  Identities=23%  Similarity=0.263  Sum_probs=195.0

Q ss_pred             ccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCC
Q 011033           19 CSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALP   98 (495)
Q Consensus        19 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~   98 (495)
                      .++++|++++ ++++.+|+.        +    ++|++|++++| .+..+|..   +.+|++|++++| .++.++.  .+
T Consensus        38 ~~l~~LdLs~-~~L~~lp~~--------~----~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~l~~n-~l~~l~~--lp   97 (353)
T d1jl5a_          38 RQAHELELNN-LGLSSLPEL--------P----PHLESLVASCN-SLTELPEL---PQSLKSLLVDNN-NLKALSD--LP   97 (353)
T ss_dssp             HTCSEEECTT-SCCSCCCSC--------C----TTCSEEECCSS-CCSSCCCC---CTTCCEEECCSS-CCSCCCS--CC
T ss_pred             cCCCEEEeCC-CCCCCCCCC--------C----CCCCEEECCCC-CCcccccc---hhhhhhhhhhhc-ccchhhh--hc
Confidence            4699999999 578888762        3    88999999997 67888864   468999999997 6777664  34


Q ss_pred             CCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccccCCCCccEEEeccCCCccccccccccccCCCCcc
Q 011033           99 SKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSSS  178 (495)
Q Consensus        99 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  178 (495)
                      +.|++|++++|. +..+|.. ...  ++|+.|++.++. +...+.  ....+..+.+..+......    .+        
T Consensus        98 ~~L~~L~L~~n~-l~~lp~~-~~l--~~L~~L~l~~~~-~~~~~~--~~~~l~~l~~~~~~~~~~~----~l--------  158 (353)
T d1jl5a_          98 PLLEYLGVSNNQ-LEKLPEL-QNS--SFLKIIDVDNNS-LKKLPD--LPPSLEFIAAGNNQLEELP----EL--------  158 (353)
T ss_dssp             TTCCEEECCSSC-CSSCCCC-TTC--TTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCCSSCC----CC--------
T ss_pred             cccccccccccc-cccccch-hhh--ccceeecccccc-cccccc--ccccccchhhccccccccc----cc--------
Confidence            579999999987 6777753 334  889999998854 333333  3456777776654332211    11        


Q ss_pred             CcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCC
Q 011033          179 NRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENL  258 (495)
Q Consensus       179 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  258 (495)
                         ...+.++.+.+..+.. ...               .......+.+... +.....++. ...++.|+.+.++++. .
T Consensus       159 ---~~l~~l~~L~l~~n~~-~~~---------------~~~~~~~~~l~~~-~~~~~~~~~-~~~l~~L~~l~l~~n~-~  216 (353)
T d1jl5a_         159 ---QNLPFLTAIYADNNSL-KKL---------------PDLPLSLESIVAG-NNILEELPE-LQNLPFLTTIYADNNL-L  216 (353)
T ss_dssp             ---TTCTTCCEEECCSSCC-SSC---------------CCCCTTCCEEECC-SSCCSSCCC-CTTCTTCCEEECCSSC-C
T ss_pred             ---cccccceecccccccc-ccc---------------ccccccccccccc-ccccccccc-cccccccccccccccc-c
Confidence               1133466676665322 211               0111233444444 333333333 5678899999998853 3


Q ss_pred             CcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc-ccccccCCCCC
Q 011033          259 KILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEEDGLP  337 (495)
Q Consensus       259 ~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~  337 (495)
                      ..++.   ...++..+.+.++. +...+.   ..+++...++..+. ...++.   -.......++.. .+..++  ..+
T Consensus       217 ~~~~~---~~~~l~~~~~~~~~-~~~~~~---~~~~l~~~~~~~~~-~~~l~~---l~~~~~~~~~~~~~~~~~~--~~~  283 (353)
T d1jl5a_         217 KTLPD---LPPSLEALNVRDNY-LTDLPE---LPQSLTFLDVSENI-FSGLSE---LPPNLYYLNASSNEIRSLC--DLP  283 (353)
T ss_dssp             SSCCS---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSEESC---CCTTCCEEECCSSCCSEEC--CCC
T ss_pred             ccccc---cccccccccccccc-cccccc---cccccccccccccc-cccccc---ccchhcccccccCcccccc--ccC
Confidence            33433   34567788887763 333332   22356666665442 121211   012333444444 444442  346


Q ss_pred             CccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeecccccccccccc
Q 011033          338 TNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSS  417 (495)
Q Consensus       338 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~  417 (495)
                      ++|++|++++|. +.. +      -..+++|+.|++++|  .+..++.          .+++|++|++++| .++.+|..
T Consensus       284 ~~L~~L~Ls~N~-l~~-l------p~~~~~L~~L~L~~N--~L~~l~~----------~~~~L~~L~L~~N-~L~~lp~~  342 (353)
T d1jl5a_         284 PSLEELNVSNNK-LIE-L------PALPPRLERLIASFN--HLAEVPE----------LPQNLKQLHVEYN-PLREFPDI  342 (353)
T ss_dssp             TTCCEEECCSSC-CSC-C------CCCCTTCCEEECCSS--CCSCCCC----------CCTTCCEEECCSS-CCSSCCCC
T ss_pred             CCCCEEECCCCc-cCc-c------ccccCCCCEEECCCC--cCCcccc----------ccCCCCEEECcCC-cCCCCCcc
Confidence            899999999986 331 1      124678999999998  7777765          4578999999995 48888853


Q ss_pred             cccCCCCCeEecc
Q 011033          418 IVDLQNLTHLNLV  430 (495)
Q Consensus       418 ~~~~~~L~~L~l~  430 (495)
                         ..+|++|.+.
T Consensus       343 ---~~~L~~L~~~  352 (353)
T d1jl5a_         343 ---PESVEDLRMN  352 (353)
T ss_dssp             ---CTTCCEEECC
T ss_pred             ---ccccCeeECc
Confidence               2356776653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=7.7e-15  Score=134.93  Aligned_cols=201  Identities=20%  Similarity=0.237  Sum_probs=109.5

Q ss_pred             CCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcc-cccCCCCCCccEEEeeCCCCccccCC-CCCCCCCC
Q 011033          218 NLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKIL-PSGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKL  295 (495)
Q Consensus       218 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L  295 (495)
                      .+++++++|++++|...+..+.++..+++|+.|+++++. +..+ +..+..++.++.+.+..+..+..++. .+..+++|
T Consensus        29 ~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~-l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L  107 (284)
T d1ozna_          29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL  107 (284)
T ss_dssp             TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred             CCCCCCCEEECcCCcCCCCCHHHhhcccccccccccccc-ccccccccccccccccccccccccccccccchhhcccccC
Confidence            345677888888776544444467777888888887743 3333 34455667777777766656666643 55666777


Q ss_pred             cEEEecCccccccccccccCCCCcceeEecc-ccccccCC--CCCCccceeEeeccCccchhhhcccccCCCCCccceEE
Q 011033          296 SKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLT  372 (495)
Q Consensus       296 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~  372 (495)
                      +.|++++|......+..+..+++|+.+++++ .++.++..  ...+.|++|++++|. +....+.   .+.++++|+.++
T Consensus       108 ~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~-l~~l~~~---~f~~l~~L~~l~  183 (284)
T d1ozna_         108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPER---AFRGLHSLDRLL  183 (284)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTT---TTTTCTTCCEEE
T ss_pred             CEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCc-ccccchh---hhccccccchhh
Confidence            7777777754333334555666777777766 55555432  234455555555554 2212122   344555555555


Q ss_pred             eeccccccccchhhhccccccCCCCCCCceeeeccccccccccc-ccccCCCCCeEeccCC
Q 011033          373 IEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-SIVDLQNLTHLNLVDC  432 (495)
Q Consensus       373 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c  432 (495)
                      +++|  .+..+....      +..+++|+.|++++ +.+..++. .+..+++|++|+++++
T Consensus       184 l~~N--~l~~i~~~~------f~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         184 LHQN--RVAHVHPHA------FRDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             CCSS--CCCEECTTT------TTTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             hhhc--cccccChhH------hhhhhhcccccccc-cccccccccccccccccCEEEecCC
Confidence            5554  333332211      12334455555555 33333332 4444555555555553

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.2e-14  Score=133.64  Aligned_cols=216  Identities=17%  Similarity=0.188  Sum_probs=141.8

Q ss_pred             EEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccc-cccCCCCccEEEEeCCCCCCCCCC--CCCCC
Q 011033           23 RLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQ-SSLSLSSLREIEIYKCSSLVSFPE--VALPS   99 (495)
Q Consensus        23 ~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~   99 (495)
                      .++.++ .+++.+|..     +      ++++++|+|++| .+..+|. .+..+++|++|+++++ .+..++.  +..+.
T Consensus        15 ~v~c~~-~~L~~iP~~-----i------p~~~~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~ls~n-~l~~i~~~~~~~~~   80 (284)
T d1ozna_          15 TTSCPQ-QGLQAVPVG-----I------PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLA   80 (284)
T ss_dssp             EEECCS-SCCSSCCTT-----C------CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCT
T ss_pred             EEEcCC-CCCCccCCC-----C------CCCCCEEECcCC-cCCCCCHHHhhccccccccccccc-cccccccccccccc
Confidence            455566 457777663     2      257899999997 5677764 5888999999999887 6665554  66678


Q ss_pred             CCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccccc--cCCCCccEEEeccCCCccccccccccccCCCCc
Q 011033          100 KLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTVEEGIQSSSSSS  177 (495)
Q Consensus       100 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  177 (495)
                      .++.+.+..+..+..++...+ ..+++|++|++.++. +..++..  ...++|+.+++.++ .++.+  +...       
T Consensus        81 ~~~~l~~~~~~~~~~l~~~~~-~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~N-~l~~i--~~~~-------  148 (284)
T d1ozna_          81 LLEQLDLSDNAQLRSVDPATF-HGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDN-ALQAL--PDDT-------  148 (284)
T ss_dssp             TCCEEECCSCTTCCCCCTTTT-TTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCC--CTTT-------
T ss_pred             cccccccccccccccccchhh-cccccCCEEecCCcc-cccccccccchhcccchhhhccc-ccccc--ChhH-------
Confidence            888888877666766654433 223889999998864 4443332  55778888888874 45444  2211       


Q ss_pred             cCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCC
Q 011033          178 SNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCEN  257 (495)
Q Consensus       178 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  257 (495)
                                          +..                   .++|++|++++|......+.++..+++|+.+++.+|..
T Consensus       149 --------------------f~~-------------------~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l  189 (284)
T d1ozna_         149 --------------------FRD-------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (284)
T ss_dssp             --------------------TTT-------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             --------------------hcc-------------------ccchhhcccccCcccccchhhhccccccchhhhhhccc
Confidence                                000                   14566666666654444455667777777777777554


Q ss_pred             CCcccccCCCCCCccEEEeeCCCCccccC-CCCCCCCCCcEEEecCcc
Q 011033          258 LKILPSGLHNLGQLQEIEIWECENLVSFP-EGGLPCAKLSKLRIYGCE  304 (495)
Q Consensus       258 ~~~l~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~  304 (495)
                      ....|.++.++++|++|++++| .+..++ ..+..+++|+.|++++|+
T Consensus       190 ~~i~~~~f~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         190 AHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             CEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             cccChhHhhhhhhccccccccc-ccccccccccccccccCEEEecCCC
Confidence            4444666777777778887777 344444 355566777888777765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=2.1e-14  Score=127.25  Aligned_cols=77  Identities=17%  Similarity=0.240  Sum_probs=43.1

Q ss_pred             CCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCccee
Q 011033          243 NNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQL  322 (495)
Q Consensus       243 ~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  322 (495)
                      .+++|+.|++++|. +... ..+.++++|++|++++| .+++++. +..+++|+.|++++|+ ++.++ .+..+++|+.|
T Consensus       149 ~~~~L~~L~l~~n~-~~~~-~~l~~l~~L~~L~Ls~n-~l~~l~~-l~~l~~L~~L~Ls~N~-lt~i~-~l~~l~~L~~L  222 (227)
T d1h6ua2         149 GLTNLQYLSIGNAQ-VSDL-TPLANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNNQ-ISDVS-PLANTSNLFIV  222 (227)
T ss_dssp             GCTTCCEEECCSSC-CCCC-GGGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTSC-CCBCG-GGTTCTTCCEE
T ss_pred             cccccccccccccc-cccc-hhhcccccceecccCCC-ccCCChh-hcCCCCCCEEECcCCc-CCCCc-ccccCCCCCEE
Confidence            44555555555532 2222 22555666666666666 4554443 3455667777776663 55554 36666777777


Q ss_pred             Eec
Q 011033          323 TIG  325 (495)
Q Consensus       323 ~l~  325 (495)
                      +++
T Consensus       223 ~ls  225 (227)
T d1h6ua2         223 TLT  225 (227)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=1.8e-14  Score=127.74  Aligned_cols=187  Identities=17%  Similarity=0.241  Sum_probs=127.5

Q ss_pred             CCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcce
Q 011033          242 DNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQ  321 (495)
Q Consensus       242 ~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  321 (495)
                      ..+.+|+.|++.+| .+..+ +++..+++|++|++++| .+..+.. +..+++++.+++++|. ++.++ .+..+++|+.
T Consensus        38 ~~l~~L~~L~l~~~-~i~~l-~~l~~l~~L~~L~ls~n-~i~~~~~-l~~l~~l~~l~~~~n~-~~~i~-~l~~l~~L~~  111 (227)
T d1h6ua2          38 ADLDGITTLSAFGT-GVTTI-EGVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKT  111 (227)
T ss_dssp             HHHHTCCEEECTTS-CCCCC-TTGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCE
T ss_pred             HHcCCcCEEECCCC-CCCcc-hhHhcCCCCcEeecCCc-eeecccc-cccccccccccccccc-ccccc-cccccccccc
Confidence            34567777777764 35555 35677778888888777 4444432 4556677778777764 45554 4667788888


Q ss_pred             eEecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCC
Q 011033          322 LTIGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASL  400 (495)
Q Consensus       322 L~l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L  400 (495)
                      +.+++ ....+......+.++.+.++++.... .     ..+.++++|++|++++|  .+.....-.        .+++|
T Consensus       112 l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~-----~~~~~~~~L~~L~l~~n--~~~~~~~l~--------~l~~L  175 (227)
T d1h6ua2         112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITN-I-----SPLAGLTNLQYLSIGNA--QVSDLTPLA--------NLSKL  175 (227)
T ss_dssp             EECTTSCCCCCGGGTTCTTCCEEECCSSCCCC-C-----GGGGGCTTCCEEECCSS--CCCCCGGGT--------TCTTC
T ss_pred             cccccccccccchhccccchhhhhchhhhhch-h-----hhhcccccccccccccc--ccccchhhc--------ccccc
Confidence            88777 55555445556777788877765322 1     13566778888888887  554444322        45689


Q ss_pred             ceeeecccccccccccccccCCCCCeEeccCCCCCCCCCCCCCccccceeecc
Q 011033          401 TSLRIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQLSIY  453 (495)
Q Consensus       401 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~  453 (495)
                      ++|+++++ +++.++ .+.++++|++|++++| +++.++.-+.+++|++|+++
T Consensus       176 ~~L~Ls~n-~l~~l~-~l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         176 TTLKADDN-KISDIS-PLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             CEEECCSS-CCCCCG-GGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEE
T ss_pred             eecccCCC-ccCCCh-hhcCCCCCCEEECcCC-cCCCCcccccCCCCCEEEee
Confidence            99999884 778877 4788899999999996 58888765567888888875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.2e-13  Score=121.78  Aligned_cols=77  Identities=19%  Similarity=0.175  Sum_probs=49.2

Q ss_pred             ccceEEeeccccccccchhhhccccccCCCCCCCceeeeccccccccccc-ccccCCCCCeEeccCCCCCCCCCCCCC--
Q 011033          367 SLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-SIVDLQNLTHLNLVDCPKLKYFPEKGL--  443 (495)
Q Consensus       367 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~--  443 (495)
                      .++.|++++|  .+..++...       ...+++..+....++.++.+|. .+.++++|++|+++++ +++.+|...+  
T Consensus       154 ~l~~L~l~~n--~l~~i~~~~-------~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~  223 (242)
T d1xwdc1         154 ESVILWLNKN--GIQEIHNCA-------FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLEN  223 (242)
T ss_dssp             SCEEEECCSS--CCCEECTTT-------TTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTS-CCCCCCSSSCTT
T ss_pred             cceeeecccc--ccccccccc-------ccchhhhccccccccccccccHHHhcCCCCCCEEECCCC-cCCccCHHHHcC
Confidence            6677777776  566655533       1234566666555578888876 5788889999999884 5888877433  


Q ss_pred             ccccceeecc
Q 011033          444 PSSLLQLSIY  453 (495)
Q Consensus       444 ~~~L~~L~l~  453 (495)
                      ++.|+++++.
T Consensus       224 l~~L~~l~~~  233 (242)
T d1xwdc1         224 LKKLRARSTY  233 (242)
T ss_dssp             CCEEESSSEE
T ss_pred             CcccccCcCC
Confidence            3444444433

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.48  E-value=1.7e-13  Score=118.55  Aligned_cols=161  Identities=17%  Similarity=0.234  Sum_probs=83.2

Q ss_pred             CCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeE
Q 011033          244 NTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLT  323 (495)
Q Consensus       244 ~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  323 (495)
                      ++++++|++.++ .+..+ +++..+++|++|++++| .++.++. +..+++|+.|++++|. +..++ .+..+++     
T Consensus        39 l~~l~~L~l~~~-~i~~l-~~l~~l~nL~~L~Ls~N-~l~~~~~-l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~-----  107 (199)
T d2omxa2          39 LDQVTTLQADRL-GIKSI-DGVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQ-IADIT-PLANLTN-----  107 (199)
T ss_dssp             HTTCCEEECTTS-CCCCC-TTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTT-----
T ss_pred             hcCCCEEECCCC-CCCCc-cccccCCCcCcCccccc-cccCccc-ccCCcccccccccccc-ccccc-ccccccc-----
Confidence            345666666653 23333 23455566666666655 3444332 3445555555555553 23332 2444444     


Q ss_pred             eccccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCcee
Q 011033          324 IGGELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSL  403 (495)
Q Consensus       324 l~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  403 (495)
                                      |+.|++++|.....      ..+..+++|+.|++++|  .+..++.-.        ..++|+.|
T Consensus       108 ----------------L~~L~l~~~~~~~~------~~~~~l~~L~~L~l~~n--~l~~~~~l~--------~~~~L~~L  155 (199)
T d2omxa2         108 ----------------LTGLTLFNNQITDI------DPLKNLTNLNRLELSSN--TISDISALS--------GLTSLQQL  155 (199)
T ss_dssp             ----------------CSEEECCSSCCCCC------GGGTTCTTCSEEECCSS--CCCCCGGGT--------TCTTCSEE
T ss_pred             ----------------cccccccccccccc------cccchhhhhHHhhhhhh--hhccccccc--------cccccccc
Confidence                            44445444442210      12445566666666665  444444322        34566677


Q ss_pred             eecccccccccccccccCCCCCeEeccCCCCCCCCCCCCCcccccee
Q 011033          404 RIVDFPNLERLSSSIVDLQNLTHLNLVDCPKLKYFPEKGLPSSLLQL  450 (495)
Q Consensus       404 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L  450 (495)
                      ++.+ ++++.++ .+.++++|++|++++| ++++++.-+.+++|++|
T Consensus       156 ~l~~-n~l~~l~-~l~~l~~L~~L~ls~N-~i~~i~~l~~L~~L~~L  199 (199)
T d2omxa2         156 NFSS-NQVTDLK-PLANLTTLERLDISSN-KVSDISVLAKLTNLESL  199 (199)
T ss_dssp             ECCS-SCCCCCG-GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEE
T ss_pred             cccc-ccccCCc-cccCCCCCCEEECCCC-CCCCCccccCCCCCCcC
Confidence            7666 4556655 4666777777777775 46666543334555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.46  E-value=6.3e-13  Score=115.87  Aligned_cols=97  Identities=13%  Similarity=0.141  Sum_probs=50.5

Q ss_pred             cccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEe
Q 011033           52 CRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLY  131 (495)
Q Consensus        52 ~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  131 (495)
                      .+|++|++++| .+..++. +..+++|++|++++| .++.+++++.+++|++|++++|. ++.++. +...  ++|+.|+
T Consensus        46 ~~L~~L~l~~~-~i~~l~~-l~~l~~L~~L~L~~n-~i~~l~~~~~l~~L~~L~l~~n~-i~~l~~-l~~l--~~L~~L~  118 (210)
T d1h6ta2          46 NSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDENK-VKDLSS-LKDL--KKLKSLS  118 (210)
T ss_dssp             HTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCGGG-GTTC--TTCCEEE
T ss_pred             cCccEEECcCC-CCCCchh-HhhCCCCCEEeCCCc-cccCccccccCcccccccccccc-cccccc-cccc--ccccccc
Confidence            56666666665 3344442 556666666666665 55555555666666666666654 444442 2222  5566666


Q ss_pred             cccCccccccccccCCCCccEEEec
Q 011033          132 IEHCRTLTYLAGVQLPRSLKRLDIL  156 (495)
Q Consensus       132 l~~~~~l~~~~~~~~~~~L~~L~l~  156 (495)
                      +.++. +..++....+++++.+.++
T Consensus       119 l~~~~-~~~~~~l~~l~~l~~l~~~  142 (210)
T d1h6ta2         119 LEHNG-ISDINGLVHLPQLESLYLG  142 (210)
T ss_dssp             CTTSC-CCCCGGGGGCTTCCEEECC
T ss_pred             ccccc-ccccccccccccccccccc
Confidence            55532 2333333333444444433

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.45  E-value=2.4e-13  Score=118.54  Aligned_cols=163  Identities=18%  Similarity=0.207  Sum_probs=87.3

Q ss_pred             CCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeE
Q 011033          244 NTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLT  323 (495)
Q Consensus       244 ~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  323 (495)
                      +.+|+.|++++| .+..++ ++..+++|++|++++| .++.++. +..+++|+.|++++|. ++.+| .+..+++|+.|+
T Consensus        45 L~~L~~L~l~~~-~i~~l~-~l~~l~~L~~L~L~~n-~i~~l~~-~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCC-CCCCch-hHhhCCCCCEEeCCCc-cccCccc-cccCcccccccccccc-ccccc-cccccccccccc
Confidence            456777777774 344443 4667778888888777 4555553 3456677777777764 55554 466677777777


Q ss_pred             ecc-ccccccCCCCCCccceeEeeccCccchhhhcccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCce
Q 011033          324 IGG-ELPSLEEDGLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTS  402 (495)
Q Consensus       324 l~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  402 (495)
                      +++ .+..++....++.++.+++++|.... .     ..+..+++|+.+++++|  .+..++.-.        .+++|+.
T Consensus       119 l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~-~-----~~~~~l~~L~~l~l~~n--~l~~i~~l~--------~l~~L~~  182 (210)
T d1h6ta2         119 LEHNGISDINGLVHLPQLESLYLGNNKITD-I-----TVLSRLTKLDTLSLEDN--QISDIVPLA--------GLTKLQN  182 (210)
T ss_dssp             CTTSCCCCCGGGGGCTTCCEEECCSSCCCC-C-----GGGGGCTTCSEEECCSS--CCCCCGGGT--------TCTTCCE
T ss_pred             cccccccccccccccccccccccccccccc-c-----ccccccccccccccccc--ccccccccc--------CCCCCCE
Confidence            766 44444443444555555555554211 1     01334455555555554  333333211        2334455


Q ss_pred             eeecccccccccccccccCCCCCeEecc
Q 011033          403 LRIVDFPNLERLSSSIVDLQNLTHLNLV  430 (495)
Q Consensus       403 L~l~~~~~l~~l~~~~~~~~~L~~L~l~  430 (495)
                      |++++ +.+++++ .+.++++|++|+++
T Consensus       183 L~Ls~-N~i~~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         183 LYLSK-NHISDLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             EECCS-SCCCBCG-GGTTCTTCSEEEEE
T ss_pred             EECCC-CCCCCCh-hhcCCCCCCEEEcc
Confidence            55444 2344444 34444444444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.2e-14  Score=131.49  Aligned_cols=222  Identities=16%  Similarity=0.204  Sum_probs=119.5

Q ss_pred             cEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCC--CCC-CCCC
Q 011033           22 RRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVS--FPE-VALP   98 (495)
Q Consensus        22 ~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~--l~~-~~~~   98 (495)
                      +.+|+++ ..+   +++    .+.++..  ..+..+.++.. .+...........+|++|++++| .+..  +.. +..+
T Consensus         3 ~~lDLs~-~~l---~~~----~l~~l~~--~~~~~lrl~~~-~~~~~~~~~~~~~~L~~LdLs~~-~i~~~~l~~l~~~c   70 (284)
T d2astb2           3 QTLDLTG-KNL---HPD----VTGRLLS--QGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNS-VIEVSTLHGILSQC   70 (284)
T ss_dssp             SEEECTT-CBC---CHH----HHHHHHH--TTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTC-EECHHHHHHHHTTB
T ss_pred             CEEECCC-CCC---Cch----HHHHHHh--ccceEeecccc-ccccchhhhccCCCCCEEECCCC-ccCHHHHHHHHHhC
Confidence            5678877 333   222    3444421  22445555543 22222222345567888888877 3332  222 6677


Q ss_pred             CCCcEEEEeCCCCCCccccccccCCCCCccEEecccCccccccc--c-ccCCCCccEEEeccCCCccccccccccccCCC
Q 011033           99 SKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLA--G-VQLPRSLKRLDILSCDNIRTLTVEEGIQSSSS  175 (495)
Q Consensus        99 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  175 (495)
                      ++|++|++++|......+..+...  ++|++|++++|..++...  . ...+++|++|++++|..+..-.+...      
T Consensus        71 ~~L~~L~L~~~~l~~~~~~~l~~~--~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~------  142 (284)
T d2astb2          71 SKLQNLSLEGLRLSDPIVNTLAKN--SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA------  142 (284)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTC--TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH------
T ss_pred             CCcccccccccCCCcHHHHHHhcC--CCCcCccccccccccccccchhhHHHHhccccccccccccccccchhh------
Confidence            888888888876333344444433  778888887776665421  1 13456777777777655532110110      


Q ss_pred             CccCcccCccccceeeecCCCCCcccccCCCCcccccccccCCCCCCccEEEeecCCC-c--hhhhhhcCCCCCCcEEee
Q 011033          176 SSSNRRYTSSLLEKLEIRDCPSLTCIFSQNELPATLESLEVGNLPPSLKSLFVWYCPK-L--ESIAERLDNNTSLETINI  252 (495)
Q Consensus       176 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~--~~~~~~~~~~~~L~~L~l  252 (495)
                                                              .....+.|+.|+++++.. +  ..+......+++|++|++
T Consensus       143 ----------------------------------------~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L  182 (284)
T d2astb2         143 ----------------------------------------VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  182 (284)
T ss_dssp             ----------------------------------------HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             ----------------------------------------hcccccccchhhhccccccccccccccccccccccccccc
Confidence                                                    011124455666654421 1  122233345677777777


Q ss_pred             eCCCCCCc-ccccCCCCCCccEEEeeCCCCccccC-CCCCCCCCCcEEEecCc
Q 011033          253 SGCENLKI-LPSGLHNLGQLQEIEIWECENLVSFP-EGGLPCAKLSKLRIYGC  303 (495)
Q Consensus       253 ~~~~~~~~-l~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~  303 (495)
                      ++|..+.. ....+.++++|++|++++|..+++-. ..+..+|+|+.|++.+|
T Consensus       183 ~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            77665542 23456667777777777776554322 23445667777777776

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=6.3e-13  Score=114.84  Aligned_cols=120  Identities=20%  Similarity=0.242  Sum_probs=84.2

Q ss_pred             CCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEe
Q 011033          221 PSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRI  300 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l  300 (495)
                      +++++|+++++...+ ++ .+..+++|++|++++| .+..++. +.++++|+.|++++| .+..++. +..+++|+.|++
T Consensus        40 ~~l~~L~l~~~~i~~-l~-~l~~l~nL~~L~Ls~N-~l~~~~~-l~~l~~L~~L~l~~n-~~~~~~~-l~~l~~L~~L~l  113 (199)
T d2omxa2          40 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTL  113 (199)
T ss_dssp             TTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSEEEC
T ss_pred             cCCCEEECCCCCCCC-cc-ccccCCCcCcCccccc-cccCccc-ccCCccccccccccc-ccccccc-cccccccccccc
Confidence            689999999876543 32 3678999999999996 5666654 889999999999998 4555553 567789999999


Q ss_pred             cCccccccccccccCCCCcceeEecc-ccccccCCCCCCccceeEeecc
Q 011033          301 YGCERLEALPKGLHNLTSLQQLTIGG-ELPSLEEDGLPTNLHSLHIWGN  348 (495)
Q Consensus       301 ~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~~~~~~~~~L~~L~l~~~  348 (495)
                      ++|.... + ..+..+++|+.|++++ .+..++....+++|++|++.+|
T Consensus       114 ~~~~~~~-~-~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n  160 (199)
T d2omxa2         114 FNNQITD-I-DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSN  160 (199)
T ss_dssp             CSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred             ccccccc-c-cccchhhhhHHhhhhhhhhcccccccccccccccccccc
Confidence            9886433 3 3466777777777766 5554433333444444444444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.8e-14  Score=130.78  Aligned_cols=179  Identities=17%  Similarity=0.199  Sum_probs=90.2

Q ss_pred             CCccEEEeeCCCCcc-ccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc--cccc--ccC-CCCCCccce
Q 011033          269 GQLQEIEIWECENLV-SFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG--ELPS--LEE-DGLPTNLHS  342 (495)
Q Consensus       269 ~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~--~l~~--~~~-~~~~~~L~~  342 (495)
                      .+|++|++++|.... .+...+..|++|++|++++|......+..+..+++|++|++++  .+++  +.. ...+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            455556655542111 1222344455566666665543333333445555666666555  2221  111 123466777


Q ss_pred             eEeeccCccchhhhcccccCCCCCccceEEeecccccccc--chhhhccccccCCCCCCCceeeecccccccc-cccccc
Q 011033          343 LHIWGNMEIWKSMIERGRGFHRFSSLRHLTIEGCDDDMVS--FPLEDKRLGTALPLPASLTSLRIVDFPNLER-LSSSIV  419 (495)
Q Consensus       343 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~  419 (495)
                      |++++|..+++..... .....+++|+.|++++|...+..  +..-.       ...++|+.|++++|..+++ ....+.
T Consensus       126 L~ls~c~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~-------~~~~~L~~L~L~~~~~itd~~~~~l~  197 (284)
T d2astb2         126 LNLSWCFDFTEKHVQV-AVAHVSETITQLNLSGYRKNLQKSDLSTLV-------RRCPNLVHLDLSDSVMLKNDCFQEFF  197 (284)
T ss_dssp             EECCCCTTCCHHHHHH-HHHHSCTTCCEEECCSCGGGSCHHHHHHHH-------HHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred             cccccccccccccchh-hhcccccccchhhhcccccccccccccccc-------cccccccccccccccCCCchhhhhhc
Confidence            7777766554332210 01223456777777765222221  11111       1235677777777766653 223556


Q ss_pred             cCCCCCeEeccCCCCCCCCCCC--CCccccceeeccCC
Q 011033          420 DLQNLTHLNLVDCPKLKYFPEK--GLPSSLLQLSIYRC  455 (495)
Q Consensus       420 ~~~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c  455 (495)
                      .+++|++|++++|+.++.-...  +.+++|+.|++.+|
T Consensus       198 ~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         198 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            6777777777777766542221  22567777777776

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.2e-12  Score=115.16  Aligned_cols=205  Identities=20%  Similarity=0.217  Sum_probs=138.4

Q ss_pred             CCCCCccEEEeecCCCchhhhhhcCCCCCCcEEeeeCCCCCCccc-ccCCCCCCccEEEeeCCCCccccCC-CCCCCCCC
Q 011033          218 NLPPSLKSLFVWYCPKLESIAERLDNNTSLETINISGCENLKILP-SGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKL  295 (495)
Q Consensus       218 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L  295 (495)
                      .+++++++|++++|......+..|.++++|++|++++|.....++ .++..++.++++.+..+..+..++. .+..+++|
T Consensus        26 ~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L  105 (242)
T d1xwdc1          26 DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL  105 (242)
T ss_dssp             CSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTC
T ss_pred             CCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccc
Confidence            455789999999876544334468899999999999976665553 4577899999999987666666654 56778999


Q ss_pred             cEEEecCccccccccc--cccCCCCcceeEecc-ccccccCC---CCCCccceeEeeccCccchhhhcccccCCCCCccc
Q 011033          296 SKLRIYGCERLEALPK--GLHNLTSLQQLTIGG-ELPSLEED---GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLR  369 (495)
Q Consensus       296 ~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~-~l~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~  369 (495)
                      +.+++++|. +...+.  .+..++.+..+...+ .+..++..   +....++.|++.+|.. .... .   ...+..+++
T Consensus       106 ~~l~l~~~~-l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l-~~i~-~---~~~~~~~l~  179 (242)
T d1xwdc1         106 QYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI-QEIH-N---CAFNGTQLD  179 (242)
T ss_dssp             CEEEEESCC-CCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC-CEEC-T---TTTTTCCEE
T ss_pred             cccccchhh-hcccccccccccccccccccccccccccccccccccccccceeeecccccc-cccc-c---ccccchhhh
Confidence            999999985 444443  233344554445555 55555443   2345788899988763 3222 2   234456666


Q ss_pred             eEEe-eccccccccchhhhccccccCCCCCCCceeeeccccccccccc-ccccCCCCCeEeccCCCCCCCCCC
Q 011033          370 HLTI-EGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-SIVDLQNLTHLNLVDCPKLKYFPE  440 (495)
Q Consensus       370 ~L~l-~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~  440 (495)
                      ++.. ++|  .+..++...      +..+++|+.|++++ ++++.+|. .+.+++.|+.+++.   +++.+|.
T Consensus       180 ~~~~l~~n--~l~~l~~~~------f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~l~~~---~l~~lp~  240 (242)
T d1xwdc1         180 ELNLSDNN--NLEELPNDV------FHGASGPVILDISR-TRIHSLPSYGLENLKKLRARSTY---NLKKLPT  240 (242)
T ss_dssp             EEECTTCT--TCCCCCTTT------TTTSCCCSEEECTT-SCCCCCCSSSCTTCCEEESSSEE---SSSCSCC
T ss_pred             cccccccc--ccccccHHH------hcCCCCCCEEECCC-CcCCccCHHHHcCCcccccCcCC---CCCcCCC
Confidence            6654 444  777776643      34568999999999 67999986 45666666655554   4556554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=5.8e-12  Score=99.19  Aligned_cols=102  Identities=22%  Similarity=0.190  Sum_probs=84.1

Q ss_pred             cEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCCCCCCCCC
Q 011033           22 RRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKL  101 (495)
Q Consensus        22 ~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L  101 (495)
                      |.|++++ ++++.++.      +.++    ++|++|++++| .+..+|..++.+++|++|++++| .++.++.++.+++|
T Consensus         1 R~L~Ls~-n~l~~l~~------l~~l----~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N-~i~~l~~~~~l~~L   67 (124)
T d1dcea3           1 RVLHLAH-KDLTVLCH------LEQL----LLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVDGVANLPRL   67 (124)
T ss_dssp             SEEECTT-SCCSSCCC------GGGG----TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCGGGTTCSSC
T ss_pred             CEEEcCC-CCCCCCcc------cccC----CCCCEEECCCC-ccCcchhhhhhhhcccccccccc-cccccCcccccccc
Confidence            6899999 68888754      7888    99999999997 66889888999999999999998 78888889999999


Q ss_pred             cEEEEeCCCCCCcccc--ccccCCCCCccEEecccCccccc
Q 011033          102 KIIEIEGCDALKSLPE--AWMCDTNSSLETLYIEHCRTLTY  140 (495)
Q Consensus       102 ~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~  140 (495)
                      ++|++++|. +..++.  .+...  ++|+.|++++++ ++.
T Consensus        68 ~~L~l~~N~-i~~~~~~~~l~~~--~~L~~L~l~~N~-i~~  104 (124)
T d1dcea3          68 QELLLCNNR-LQQSAAIQPLVSC--PRLVLLNLQGNS-LCQ  104 (124)
T ss_dssp             CEEECCSSC-CCSSSTTGGGGGC--TTCCEEECTTSG-GGG
T ss_pred             CeEECCCCc-cCCCCCchhhcCC--CCCCEEECCCCc-CCc
Confidence            999999987 555553  34433  889999999854 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=5.8e-13  Score=130.65  Aligned_cols=106  Identities=14%  Similarity=0.184  Sum_probs=70.8

Q ss_pred             ccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCc----cccccccCCCCccEEEEeCCCCCCCCCC
Q 011033           19 CSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLV----KLPQSSLSLSSLREIEIYKCSSLVSFPE   94 (495)
Q Consensus        19 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~----~l~~~~~~l~~L~~L~l~~~~~l~~l~~   94 (495)
                      ++|++|++++ +++++.   +|...+..+    ++++.|+|++|....    .++..+..+++|++|++++| .+++.+.
T Consensus         2 ~~l~~ld~~~-~~i~~~---~~~~l~~~l----~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~   72 (460)
T d1z7xw1           2 LDIQSLDIQC-EELSDA---RWAELLPLL----QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGV   72 (460)
T ss_dssp             EEEEEEEEES-CCCCHH---HHHHHHHHH----TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHH
T ss_pred             CCCCEEEeeC-CcCChH---HHHHHHHhC----CCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHH
Confidence            4689999987 777652   233455566    999999999995321    34455778999999999987 5543211


Q ss_pred             ------C-CCCCCCcEEEEeCCCCCCcc-----ccccccCCCCCccEEecccCc
Q 011033           95 ------V-ALPSKLKIIEIEGCDALKSL-----PEAWMCDTNSSLETLYIEHCR  136 (495)
Q Consensus        95 ------~-~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~  136 (495)
                            + ....+|++|++++|. +++.     +..+..  +++|++|++++|.
T Consensus        73 ~~l~~~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~--~~~L~~L~L~~N~  123 (460)
T d1z7xw1          73 HCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRT--LPTLQELHLSDNL  123 (460)
T ss_dssp             HHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTS--CTTCCEEECCSSB
T ss_pred             HHHHHHHhcCCCCCCEEECCCCC-ccccccccccchhhc--ccccccccccccc
Confidence                  1 124579999999987 4432     223322  3788899888753

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=3e-11  Score=99.97  Aligned_cols=126  Identities=16%  Similarity=0.117  Sum_probs=92.3

Q ss_pred             CccccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCC
Q 011033           12 NELLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVS   91 (495)
Q Consensus        12 ~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~   91 (495)
                      ...+.++..+|+|++++ ++++.|+.     .+..+    ++|+.|++++| .+..++. +..+++|++|++++| .++.
T Consensus        11 ~~~~~n~~~lr~L~L~~-n~I~~i~~-----~~~~l----~~L~~L~Ls~N-~i~~l~~-~~~l~~L~~L~ls~N-~i~~   77 (162)
T d1a9na_          11 AAQYTNAVRDRELDLRG-YKIPVIEN-----LGATL----DQFDAIDFSDN-EIRKLDG-FPLLRRLKTLLVNNN-RICR   77 (162)
T ss_dssp             SCEEECTTSCEEEECTT-SCCCSCCC-----GGGGT----TCCSEEECCSS-CCCEECC-CCCCSSCCEEECCSS-CCCE
T ss_pred             hHhccCcCcCcEEECCC-CCCCccCc-----ccccc----ccCCEEECCCC-CCCccCC-cccCcchhhhhcccc-cccC
Confidence            34466778899999999 67888865     25666    89999999998 5677754 788999999999998 6777


Q ss_pred             CCC--CCCCCCCcEEEEeCCCCCCcccc--ccccCCCCCccEEecccCcccccccc-----ccCCCCccEEE
Q 011033           92 FPE--VALPSKLKIIEIEGCDALKSLPE--AWMCDTNSSLETLYIEHCRTLTYLAG-----VQLPRSLKRLD  154 (495)
Q Consensus        92 l~~--~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~~~~-----~~~~~~L~~L~  154 (495)
                      ++.  +..+++|+.|++++|. +..++.  .+..  +++|++|++.+|+ ++..+.     ...+|+|+.|+
T Consensus        78 l~~~~~~~l~~L~~L~L~~N~-i~~~~~l~~l~~--l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          78 IGEGLDQALPDLTELILTNNS-LVELGDLDPLAS--LKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGG--CTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEET
T ss_pred             CCccccccccccccceecccc-cccccccccccc--ccccchhhcCCCc-cccccchHHHHHHHCCCcCeeC
Confidence            765  5568899999999987 555543  2333  3889999998864 444443     24456676665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=8.8e-11  Score=97.08  Aligned_cols=104  Identities=17%  Similarity=0.215  Sum_probs=54.1

Q ss_pred             CCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCcccccccccc-ccCCCCcc
Q 011033          242 DNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKG-LHNLTSLQ  320 (495)
Q Consensus       242 ~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~l~~L~  320 (495)
                      .++.++++|++++| .+..++..+..+++|+.|++++| .++.++ .+..+++|+.|++++|. ++.+++. +..+++|+
T Consensus        15 ~n~~~lr~L~L~~n-~I~~i~~~~~~l~~L~~L~Ls~N-~i~~l~-~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          15 TNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDN-EIRKLD-GFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT   90 (162)
T ss_dssp             ECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSS-CCCEEC-CCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred             cCcCcCcEEECCCC-CCCccCccccccccCCEEECCCC-CCCccC-CcccCcchhhhhccccc-ccCCCccccccccccc
Confidence            34556666666663 34445444455666666666666 455553 34455666666666664 4444432 34455666


Q ss_pred             eeEecc-ccccccC---CCCCCccceeEeeccC
Q 011033          321 QLTIGG-ELPSLEE---DGLPTNLHSLHIWGNM  349 (495)
Q Consensus       321 ~L~l~~-~l~~~~~---~~~~~~L~~L~l~~~~  349 (495)
                      +|++++ .+..++.   ...+++|++|++++|+
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             cceeccccccccccccccccccccchhhcCCCc
Confidence            666655 4433322   1223444444444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.02  E-value=5.5e-10  Score=95.27  Aligned_cols=122  Identities=19%  Similarity=0.223  Sum_probs=59.4

Q ss_pred             CcEEEecCccccccccccccCCCCcceeEecc-ccccc-cCC--CCCCccceeEeeccCccchhhhcccccCCCCCccce
Q 011033          295 LSKLRIYGCERLEALPKGLHNLTSLQQLTIGG-ELPSL-EED--GLPTNLHSLHIWGNMEIWKSMIERGRGFHRFSSLRH  370 (495)
Q Consensus       295 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~l~~~-~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~  370 (495)
                      .+.++.+++ .++.+|..+.  +++++|+|++ .+... +..  ...++|++|++++|.... ....   .+..+++|++
T Consensus        10 ~~~v~Cs~~-~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~-~~~~---~~~~~~~L~~   82 (192)
T d1w8aa_          10 GTTVDCTGR-GLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPN---AFEGASHIQE   82 (192)
T ss_dssp             TTEEECTTS-CCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC-BCTT---TTTTCTTCCE
T ss_pred             CCEEEEeCC-CcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccc-cccc---ccccccccce
Confidence            455666554 3556665442  4566666666 44332 121  224555555555554221 2221   3455555555


Q ss_pred             EEeeccccccccchhhhccccccCCCCCCCceeeeccccccccccc-ccccCCCCCeEeccCC
Q 011033          371 LTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-SIVDLQNLTHLNLVDC  432 (495)
Q Consensus       371 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c  432 (495)
                      |++++|  .+..++...      |..+++|++|+|++ +.++.++. .+..+++|++++++++
T Consensus        83 L~Ls~N--~l~~l~~~~------F~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          83 LQLGEN--KIKEISNKM------FLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             EECCSC--CCCEECSSS------STTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             eeeccc--cccccCHHH------HhCCCcccccccCC-ccccccCHHHhcCCccccccccccc
Confidence            555555  444444422      22344555555555 44555543 3455555555555553

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.99  E-value=3.5e-10  Score=88.70  Aligned_cols=73  Identities=22%  Similarity=0.293  Sum_probs=35.2

Q ss_pred             EEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCCCCCCCCCCcEEEecCccccccccccccCCCCcceeEecc
Q 011033          249 TINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLTSLQQLTIGG  326 (495)
Q Consensus       249 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  326 (495)
                      .|++++| .+..++ .+..+++|++|++++| .++.+|..+..+++|+.|++++|. ++.+| .+..+++|++|++++
T Consensus         2 ~L~Ls~n-~l~~l~-~l~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N~-i~~l~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           2 VLHLAHK-DLTVLC-HLEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCN   74 (124)
T ss_dssp             EEECTTS-CCSSCC-CGGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCS
T ss_pred             EEEcCCC-CCCCCc-ccccCCCCCEEECCCC-ccCcchhhhhhhhccccccccccc-ccccC-ccccccccCeEECCC
Confidence            4555552 333443 2455555555555555 444554444445555555555543 33343 244444444444444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.99  E-value=1.3e-09  Score=92.95  Aligned_cols=106  Identities=16%  Similarity=0.233  Sum_probs=62.1

Q ss_pred             CCCCccEEEeecCCCchhh-hhhcCCCCCCcEEeeeCCCCCCcccccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCc
Q 011033          219 LPPSLKSLFVWYCPKLESI-AERLDNNTSLETINISGCENLKILPSGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLS  296 (495)
Q Consensus       219 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~  296 (495)
                      +++++++|++++|.....+ +..|..+++|+.|+++++......+..+..+++|++|++++| .++.++. .+..+++|+
T Consensus        27 lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N-~l~~l~~~~F~~l~~L~  105 (192)
T d1w8aa_          27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLK  105 (192)
T ss_dssp             CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCC
T ss_pred             CCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc-cccccCHHHHhCCCccc
Confidence            4466777777766654433 334566677777777665444334455666677777777766 4555544 455566677


Q ss_pred             EEEecCccccccc-cccccCCCCcceeEecc
Q 011033          297 KLRIYGCERLEAL-PKGLHNLTSLQQLTIGG  326 (495)
Q Consensus       297 ~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~  326 (495)
                      +|++++|. ++.+ +..|..+++|++|++++
T Consensus       106 ~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~  135 (192)
T d1w8aa_         106 TLNLYDNQ-ISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             EEECCSSC-CCEECTTSSTTCTTCCEEECTT
T ss_pred             ccccCCcc-ccccCHHHhcCCcccccccccc
Confidence            77776664 3333 33455555555555544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.9e-11  Score=119.54  Aligned_cols=90  Identities=13%  Similarity=0.165  Sum_probs=61.7

Q ss_pred             cccccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCcc-----cccccc-CCCCccEEEEeCCC
Q 011033           14 LLQDICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVK-----LPQSSL-SLSSLREIEIYKCS   87 (495)
Q Consensus        14 ~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~-----l~~~~~-~l~~L~~L~l~~~~   87 (495)
                      .+..++++|+|++++| .+++-...    .++..-..+++|++|+|++| .+++     +...+. ...+|++|++++| 
T Consensus        22 l~~~l~~l~~L~L~~~-~i~~~~~~----~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-   94 (460)
T d1z7xw1          22 LLPLLQQCQVVRLDDC-GLTEARCK----DISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNC-   94 (460)
T ss_dssp             HHHHHTTCSEEEEESS-CCCHHHHH----HHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTS-
T ss_pred             HHHhCCCCCEEEeCCC-CCCHHHHH----HHHHHHhcCCCCCEEECcCC-cCChHHHHHHHHHHhcCCCCCCEEECCCC-
Confidence            4567899999999997 46532221    22222234499999999998 4442     222222 3457999999998 


Q ss_pred             CCCCCC-----C-CCCCCCCcEEEEeCCC
Q 011033           88 SLVSFP-----E-VALPSKLKIIEIEGCD  110 (495)
Q Consensus        88 ~l~~l~-----~-~~~~~~L~~L~l~~~~  110 (495)
                      .+++..     . +..+++|++|++++|.
T Consensus        95 ~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          95 CLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             CCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             Cccccccccccchhhcccccccccccccc
Confidence            566433     1 6778999999999987

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.82  E-value=2.7e-11  Score=103.86  Aligned_cols=124  Identities=17%  Similarity=0.175  Sum_probs=86.5

Q ss_pred             cccccEEeccc-ccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC-C
Q 011033           18 ICSLRRLTITS-CPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE-V   95 (495)
Q Consensus        18 ~~~L~~L~l~~-c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~   95 (495)
                      ...++.+++++ .+.++.++.     .+..+    ++|++|++++| .+..++ .+..+++|++|++++| .++.++. .
T Consensus        22 ~~~~~~~~l~~~~~~i~~l~~-----sl~~L----~~L~~L~Ls~n-~I~~i~-~l~~l~~L~~L~Ls~N-~i~~i~~~~   89 (198)
T d1m9la_          22 ATEAEKVELHGMIPPIEKMDA-----TLSTL----KACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLD   89 (198)
T ss_dssp             CTTCSCEECCBCCTTCCCCHH-----HHHHT----TTCCEEECSEE-EESCCC-CHHHHTTCCEEECCEE-EECSCSSHH
T ss_pred             ccccceeeeecccCchhhhhh-----HHhcc----cccceeECccc-CCCCcc-cccCCccccChhhccc-ccccccccc
Confidence            44456666664 234555444     48888    88999999887 556776 3788888999999887 6777776 3


Q ss_pred             CCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCcccccccc---ccCCCCccEEEeccC
Q 011033           96 ALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAG---VQLPRSLKRLDILSC  158 (495)
Q Consensus        96 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~  158 (495)
                      ..+++|+.|++++|. +..++. +..+  ++|+.|++++| .++.++.   ...+++|+.|+++++
T Consensus        90 ~~~~~L~~L~l~~N~-i~~l~~-~~~l--~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_          90 AVADTLEELWISYNQ-IASLSG-IEKL--VNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             HHHHHCCEEECSEEE-CCCHHH-HHHH--HHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred             ccccccccccccccc-cccccc-cccc--ccccccccccc-hhccccccccccCCCccceeecCCC
Confidence            445678899988876 555543 3334  77889998874 4555443   366788999988885

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.80  E-value=5.1e-11  Score=102.13  Aligned_cols=15  Identities=20%  Similarity=0.408  Sum_probs=7.9

Q ss_pred             CCCCCccceEEeecc
Q 011033          362 FHRFSSLRHLTIEGC  376 (495)
Q Consensus       362 ~~~l~~L~~L~l~~~  376 (495)
                      +..+++|++|++++|
T Consensus       136 l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         136 LAALDKLEDLLLAGN  150 (198)
T ss_dssp             HTTTTTCSEEEECSS
T ss_pred             ccCCCccceeecCCC
Confidence            444555555555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.9e-08  Score=82.04  Aligned_cols=105  Identities=18%  Similarity=0.097  Sum_probs=75.4

Q ss_pred             cccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccc-cccCCCCccEEEEeCCCCCCCCCC--
Q 011033           18 ICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQ-SSLSLSSLREIEIYKCSSLVSFPE--   94 (495)
Q Consensus        18 ~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~l~~--   94 (495)
                      +....+++.++ .++.+++..     +..+    ++|++|+++++..++.++. .|..+++|++|++++| .++.+++  
T Consensus         7 c~~~~~l~c~~-~~~~~~p~~-----l~~l----~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~   75 (156)
T d2ifga3           7 PHGSSGLRCTR-DGALDSLHH-----LPGA----ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDA   75 (156)
T ss_dssp             CSSSSCEECCS-SCCCTTTTT-----SCSC----SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTG
T ss_pred             cCCCCeEEecC-CCCccCccc-----ccCc----cccCeeecCCCccccccCchhhccccccCcceeecc-ccCCccccc
Confidence            44556677777 556665553     6666    8888888877666777654 4778888888888887 6777765  


Q ss_pred             CCCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCc
Q 011033           95 VALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCR  136 (495)
Q Consensus        95 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  136 (495)
                      +..+++|++|++++|. +..+|...+..  .+|+.|++++++
T Consensus        76 f~~l~~L~~L~Ls~N~-l~~l~~~~~~~--~~l~~L~L~~Np  114 (156)
T d2ifga3          76 FHFTPRLSRLNLSFNA-LESLSWKTVQG--LSLQELVLSGNP  114 (156)
T ss_dssp             GGSCSCCCEEECCSSC-CSCCCSTTTCS--CCCCEEECCSSC
T ss_pred             ccccccccceeccCCC-CcccChhhhcc--ccccccccCCCc
Confidence            6778888888888877 66777766544  568888887754

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.7e-07  Score=76.24  Aligned_cols=88  Identities=23%  Similarity=0.183  Sum_probs=41.7

Q ss_pred             ccccCCCCCCccEEEeeCCCCccccCC-CCCCCCCCcEEEecCccccccc-cccccCCCCcceeEecc-ccccccCCC-C
Q 011033          261 LPSGLHNLGQLQEIEIWECENLVSFPE-GGLPCAKLSKLRIYGCERLEAL-PKGLHNLTSLQQLTIGG-ELPSLEEDG-L  336 (495)
Q Consensus       261 l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~-~l~~~~~~~-~  336 (495)
                      .|..+..+++|++|+++++..++.++. .+..+++|+.|++++|. ++.+ +..|..+++|++|+|++ .+..++... .
T Consensus        23 ~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~  101 (156)
T d2ifga3          23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ  101 (156)
T ss_dssp             TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred             CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccc-cCCcccccccccccccceeccCCCCcccChhhhc
Confidence            334444445555555544434444443 33444455555555543 3333 23455555555555555 444444431 1


Q ss_pred             CCccceeEeeccC
Q 011033          337 PTNLHSLHIWGNM  349 (495)
Q Consensus       337 ~~~L~~L~l~~~~  349 (495)
                      ..+|++|++++|+
T Consensus       102 ~~~l~~L~L~~Np  114 (156)
T d2ifga3         102 GLSLQELVLSGNP  114 (156)
T ss_dssp             SCCCCEEECCSSC
T ss_pred             cccccccccCCCc
Confidence            2346666666665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.54  E-value=8.2e-09  Score=96.61  Aligned_cols=11  Identities=9%  Similarity=-0.009  Sum_probs=6.9

Q ss_pred             CCCccEEEecc
Q 011033          147 PRSLKRLDILS  157 (495)
Q Consensus       147 ~~~L~~L~l~~  157 (495)
                      .+.|+.+.+++
T Consensus       157 ~~~L~~l~l~~  167 (344)
T d2ca6a1         157 APPLRSIICGR  167 (344)
T ss_dssp             CCCCCEEECCS
T ss_pred             Ccccceeeccc
Confidence            45666776665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.50  E-value=3e-09  Score=99.66  Aligned_cols=229  Identities=15%  Similarity=0.095  Sum_probs=121.2

Q ss_pred             CCccEEEeecCCCch----hhhhhcCCCCCCcEEeeeCCCCCC----------cccccCCCCCCccEEEeeCCCCccc--
Q 011033          221 PSLKSLFVWYCPKLE----SIAERLDNNTSLETINISGCENLK----------ILPSGLHNLGQLQEIEIWECENLVS--  284 (495)
Q Consensus       221 ~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~----------~l~~~~~~l~~L~~L~l~~~~~l~~--  284 (495)
                      ..++.|++++|....    .+...+...++|+.+++.++..-.          .+...+..+++|++|++++|. ++.  
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~  109 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FGPTA  109 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CCTTT
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc-ccccc
Confidence            679999999875433    334456778899999998753211          122335567889999999883 332  


Q ss_pred             ---cCCCCCCCCCCcEEEecCcccccc----ccc---------cccCCCCcceeEecc-cccc-----ccC-CCCCCccc
Q 011033          285 ---FPEGGLPCAKLSKLRIYGCERLEA----LPK---------GLHNLTSLQQLTIGG-ELPS-----LEE-DGLPTNLH  341 (495)
Q Consensus       285 ---l~~~~~~~~~L~~L~l~~~~~~~~----~~~---------~l~~l~~L~~L~l~~-~l~~-----~~~-~~~~~~L~  341 (495)
                         +...+..+++|++|++++|..-..    +..         .....+.|+.+.+++ .+..     +.. ....+.|+
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~  189 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  189 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhc
Confidence               222334567899999988752111    000         112456677777665 3221     111 12345677


Q ss_pred             eeEeeccCccchhhhc-ccccCCCCCccceEEeeccccccccchhhhccccccCCCCCCCceeeecccccccc-----cc
Q 011033          342 SLHIWGNMEIWKSMIE-RGRGFHRFSSLRHLTIEGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLER-----LS  415 (495)
Q Consensus       342 ~L~l~~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~  415 (495)
                      +|++++|..-...... ....+..+++|+.|++++|  .+....  ...+...+...++|++|++++|. ++.     +.
T Consensus       190 ~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N--~i~~~g--~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~~~l~  264 (344)
T d2ca6a1         190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN--TFTHLG--SSALAIALKSWPNLRELGLNDCL-LSARGAAAVV  264 (344)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS--CCHHHH--HHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHH
T ss_pred             ccccccccccccccccchhhhhcchhhhcccccccc--cccccc--cccccccccccccchhhhhhcCc-cCchhhHHHH
Confidence            7777777632221110 0124566677777777776  221110  00001111234567777777743 332     22


Q ss_pred             cccc--cCCCCCeEeccCCCCCCCC-----CCC--CCccccceeeccCCc
Q 011033          416 SSIV--DLQNLTHLNLVDCPKLKYF-----PEK--GLPSSLLQLSIYRCP  456 (495)
Q Consensus       416 ~~~~--~~~~L~~L~l~~c~~l~~l-----~~~--~~~~~L~~L~l~~c~  456 (495)
                      ..+.  ..+.|++|++++|+ ++.-     ...  ...++|++|++++|.
T Consensus       265 ~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         265 DAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            2222  23567777777743 4331     110  113567777777664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=1.7e-05  Score=64.42  Aligned_cols=81  Identities=20%  Similarity=0.104  Sum_probs=56.1

Q ss_pred             hcccccceeecccccCCccc---cccccCCCCccEEEEeCCCCCCCCCC--CCCCCCCcEEEEeCCCCCCccccc-----
Q 011033           49 ELSCRLEYLRLSYCEGLVKL---PQSSLSLSSLREIEIYKCSSLVSFPE--VALPSKLKIIEIEGCDALKSLPEA-----  118 (495)
Q Consensus        49 ~~~~~L~~L~ls~~~~l~~l---~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~-----  118 (495)
                      ..+++|++|++++| .++.+   +..+..+++|+.|++++| .+++++.  .....+|+.|++++|+........     
T Consensus        62 ~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          62 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             HhCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            34599999999998 45554   344668999999999998 7887776  223457999999999854333211     


Q ss_pred             cccCCCCCccEEe
Q 011033          119 WMCDTNSSLETLY  131 (495)
Q Consensus       119 ~~~~~~~~L~~L~  131 (495)
                      .....+|+|+.||
T Consensus       140 ~i~~~~P~L~~LD  152 (162)
T d1koha1         140 AIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTSTTCCEET
T ss_pred             HHHHHCCCCCEEC
Confidence            1112248888886

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=7.3e-05  Score=60.53  Aligned_cols=118  Identities=19%  Similarity=0.120  Sum_probs=75.5

Q ss_pred             cccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCccccccccCCCCccEEEEeCCCCCCCCCC----C
Q 011033           20 SLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE----V   95 (495)
Q Consensus        20 ~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~----~   95 (495)
                      ..+.|++++......         +..+    ..+..+...++ ....++.....+++|++|++++| .++.++.    +
T Consensus        23 ~~~~Ldls~l~~~~~---------l~~~----~~~~~l~~~~~-~~~~l~~~~~~~~~L~~L~Ls~N-~i~~l~~~~~~~   87 (162)
T d1koha1          23 SQQALDLKGLRSDPD---------LVAQ----NIDVVLNRRSS-MAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSIV   87 (162)
T ss_dssp             SSCCBCCCCCSSCTT---------TTTT----TCCCCTTSHHH-HHHHHHHHHHHCTTCCCCCCCSS-CCCCCSGGGTHH
T ss_pred             hhCeeecccCCCCch---------hhhc----cchhhcchhhh-HhhhhHHHHHhCCCCCEeeCCCc-cccCCchhHHHH
Confidence            466677776433222         3333    55555555553 33444444567899999999998 7777654    4


Q ss_pred             CCCCCCcEEEEeCCCCCCccccccccCCCCCccEEecccCcccccccc--------ccCCCCccEEE
Q 011033           96 ALPSKLKIIEIEGCDALKSLPEAWMCDTNSSLETLYIEHCRTLTYLAG--------VQLPRSLKRLD  154 (495)
Q Consensus        96 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--------~~~~~~L~~L~  154 (495)
                      ..+++|+.|++++|. +..++.... ....+|+.|++.+++.......        ...+|+|+.|+
T Consensus        88 ~~l~~L~~L~Ls~N~-i~~l~~l~~-l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          88 QKAPNLKILNLSGNE-LKSERELDK-IKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHSTTCCCCCCTTSC-CCCGGGHHH-HTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             hhCCcccccccccCc-cccchhhhh-hhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            568999999999988 666665222 2336799999999753322221        14577888775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.90  E-value=0.00026  Score=57.41  Aligned_cols=89  Identities=12%  Similarity=0.044  Sum_probs=48.5

Q ss_pred             ccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCcc----ccccccCCCCccEEEEeCCCCCCCC
Q 011033           17 DICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLVK----LPQSSLSLSSLREIEIYKCSSLVSF   92 (495)
Q Consensus        17 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~~----l~~~~~~l~~L~~L~l~~~~~l~~l   92 (495)
                      +.+.|++|++++++.++.-.-..+...+..    .++|++|++++|..-..    +...+...+.|++|++++| .++.-
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~----n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n-~i~~~   87 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACN----SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPE   87 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTT----CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhh----CCccceeeccccccchhHHHHHhhhhhhcccccceeeehh-hcchH
Confidence            457788888877544432111111112222    36788888888733211    2223445677888888777 44432


Q ss_pred             CC------CCCCCCCcEEEEeCCC
Q 011033           93 PE------VALPSKLKIIEIEGCD  110 (495)
Q Consensus        93 ~~------~~~~~~L~~L~l~~~~  110 (495)
                      +.      +...+.|++|+++++.
T Consensus        88 g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          88 LLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHHHHHHhCCcCCEEECCCCc
Confidence            21      4555667777777654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.43  E-value=0.00052  Score=55.56  Aligned_cols=15  Identities=13%  Similarity=0.186  Sum_probs=8.1

Q ss_pred             ccccCCCCCeEeccC
Q 011033          417 SIVDLQNLTHLNLVD  431 (495)
Q Consensus       417 ~~~~~~~L~~L~l~~  431 (495)
                      .+...++|++|+++.
T Consensus       126 ~L~~n~sL~~l~l~~  140 (167)
T d1pgva_         126 AIEENESLLRVGISF  140 (167)
T ss_dssp             HHHHCSSCCEEECCC
T ss_pred             HHHhCCCccEeeCcC
Confidence            344455666666554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.89  E-value=0.0019  Score=51.99  Aligned_cols=87  Identities=6%  Similarity=0.030  Sum_probs=47.2

Q ss_pred             ccccccEEecccccccccccchhhHHHHhhhhhcccccceeecccccCCc----cccccccCCCCccEEEEeCCCCCCCC
Q 011033           17 DICSLRRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSYCEGLV----KLPQSSLSLSSLREIEIYKCSSLVSF   92 (495)
Q Consensus        17 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~l~~~~~~L~~L~ls~~~~l~----~l~~~~~~l~~L~~L~l~~~~~l~~l   92 (495)
                      ..+.|++|++++++.++.-.-..+...+.    ..++|++|++++|..-.    .+...+...+.++.+++++| .++.-
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~----~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~-~~~~~   89 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALK----TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGS   89 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHT----TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHh----cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc-cccch
Confidence            46778888888754444211111112222    34788888888873322    12233456677888888776 33321


Q ss_pred             C------CCCCCCCCcEEEEeC
Q 011033           93 P------EVALPSKLKIIEIEG  108 (495)
Q Consensus        93 ~------~~~~~~~L~~L~l~~  108 (495)
                      +      .+...++|+.++++.
T Consensus        90 g~~~l~~~l~~~~~L~~l~L~l  111 (166)
T d1io0a_          90 GILALVEALQSNTSLIELRIDN  111 (166)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCC
T ss_pred             hHHHHHHHHHhCccccEEeecc
Confidence            1      144556666655543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.92  E-value=0.0064  Score=48.72  Aligned_cols=15  Identities=7%  Similarity=-0.071  Sum_probs=8.5

Q ss_pred             ccccCCCCCeEeccC
Q 011033          417 SIVDLQNLTHLNLVD  431 (495)
Q Consensus       417 ~~~~~~~L~~L~l~~  431 (495)
                      .+...++|++|+++.
T Consensus       127 ~L~~n~~L~~L~l~~  141 (166)
T d1io0a_         127 MLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHHHCSSCCEEECCC
T ss_pred             HHHhCCCcCEEeCcC
Confidence            344556666666654