Citrus Sinensis ID: 011037

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-----
MAVETETELETPLRGTSCWHQWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELITLQQESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWHNSILEFKWKRMDWLCGNHCTLVFGDFRNGIAPETTCSKTLGSSSGSMVAIIVNCNEFISHRLIGLFGIFEVHHLQCSNACLLLVSWPSCNLRCGSSEPRKIK
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccccHHHHHHHccccEEcccEEEccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEcccccccccccccccccHHHHHHHHHHHEEEEEHHHHHcccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHccccccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHEEEccccccccccccccccccEEEEEEccccccccccccccccc
cccEccccccccccccccEEEEEccccccccHHccHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHcccccHHHHHHccHHHHHHHcHHHHHcccEEEEHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEcccccHHHHHHHHHHHHHHccccEEEEcccccccccc
maveteteletplrgtscwhqwnkqaffpepsfenttSYKSALKQTYPRlknrlfsrstdaTELITLQQeskqplqkcltwwdltwlcfgsvvgsGIFVITgqeakkhagpAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDsnnsdllrFKVDcfadgfnllDPVAVLILLVCNgiamsgtrrsSWLNWISSIVSSCVIVFVIIVGFvhgkttnldpflpygtegvFEAAAVVYWSYTGFDMVATMAEetkkpsrdipiglvgSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAhmippwhnsILEFKWKRMdwlcgnhctlvfgdfrngiapettcsktlgsssgSMVAIIVNCNEFISHRLIGLFGIFEVHHLQCSNACLLlvswpscnlrcgsseprkik
maveteteletplrgtscwhQWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELITlqqeskqpLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWHNSILEFKWKRMDWLCGNHCTLVFGDFRNGIAPETTCSKTLGSSSGSMVAIIVNCNEFISHRLIGLFGIFEVHHLQCSNACLLLVSWPscnlrcgsseprkik
MAVETETELETPLRGTSCWHQWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELITLQQESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVlsylasglsallsaFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNIlleavvgaaglaRSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWissivsscvivfviivGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWHNSILEFKWKRMDWLCGNHCTLVFGDFRNGIAPETTCSKTLGSSSGSMVAIIVNCNEFISHRLIGLFGIFEVHHLQCSNACLLLVSWPSCNLRCGSSEPRKIK
**************GTSCWHQWNKQAFFPE***********************LF*******ELITL******PLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAE******RDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWHNSILEFKWKRMDWLCGNHCTLVFGDFRNGIAPETTCSKTLGSSSGSMVAIIVNCNEFISHRLIGLFGIFEVHHLQCSNACLLLVSWPSCNLRC*********
********************QWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLF***********************LTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWHNSILEFKWKRMDWLCGNHCTLVFGDFRNGIAPETTCSKTLGSSSGSMVAIIVNCNEFISHRLIGLFGIFEVHHLQCSNACLLLVSWPSCNLR**********
*************RGTSCWHQWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELITLQQESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWHNSILEFKWKRMDWLCGNHCTLVFGDFRNGIAPETTCSKTLGSSSGSMVAIIVNCNEFISHRLIGLFGIFEVHHLQCSNACLLLVSWPSCNLRC*********
****************SCWHQWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELIT*QQESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWHNSILEFKWKRMDWLCGNHCTLVFGDFRNGIAPETTCSKTLGSSSGSMVAIIVNCNEFISHRLIGLFGIFEVHHLQCSNACLLLVSWPSCNLRCGS*******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MAVETETELETPLRGTSCWHQWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELITLQQESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWHNSILEFKWKRMDWLCGNHCTLVFGDFRNGIAPETTCSKTLGSSSGSMVAIIVNCNEFISHRLIGLFGIFEVHHLQCSNACLLLVSWPSCNLRCGSSEPRKIK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query495 2.2.26 [Sep-21-2011]
Q9SHH0590 Cationic amino acid trans yes no 0.787 0.661 0.718 1e-161
O64759569 Cationic amino acid trans no no 0.745 0.648 0.636 1e-141
Q84MA5 594 Cationic amino acid trans no no 0.755 0.629 0.548 1e-120
Q9LZ20583 Cationic amino acid trans no no 0.733 0.622 0.427 3e-76
Q9SQZ0584 Cationic amino acid trans no no 0.739 0.626 0.408 2e-75
Q797A7461 Uncharacterized amino aci yes no 0.765 0.822 0.334 1e-50
Q8BLQ7 635 Cationic amino acid trans yes no 0.622 0.485 0.346 1e-46
Q8GYB4 609 Cationic amino acid trans no no 0.684 0.556 0.299 1e-45
O43246 635 Cationic amino acid trans yes no 0.597 0.466 0.354 2e-45
Q9ASS7 635 Cationic amino acid trans no no 0.654 0.510 0.301 1e-44
>sp|Q9SHH0|CAAT8_ARATH Cationic amino acid transporter 8, vacuolar OS=Arabidopsis thaliana GN=CAT8 PE=1 SV=1 Back     alignment and function desciption
 Score =  569 bits (1466), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 283/394 (71%), Positives = 332/394 (84%), Gaps = 4/394 (1%)

Query: 2   AVETETELET---PLRGTSCWHQWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRS 58
           ++E   +LE+    L     + +W KQ FFPE SF++ ++YKSAL  T PRL +RL SRS
Sbjct: 5   SMEEAHQLESRSDDLSQRRSYWRWRKQDFFPEFSFQSFSTYKSALSATCPRLADRLLSRS 64

Query: 59  TDATELITLQQESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYL 118
           +DA EL   ++ES+ P+++CLTWWDL WL FGSVVGSG+FVITGQEA+  AGPA+VLSY 
Sbjct: 65  SDAYELDAARRESENPMRRCLTWWDLLWLSFGSVVGSGVFVITGQEARVGAGPAVVLSYA 124

Query: 119 ASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARS 178
            SG+SALLS  CY EF VEIPVAGGSFS+LRVELGDF+A+IAAGNILLEA+VGAAGL RS
Sbjct: 125 ISGVSALLSVLCYAEFGVEIPVAGGSFSYLRVELGDFIAFIAAGNILLEAMVGAAGLGRS 184

Query: 179 WSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWIS 238
           WSSYLAS++  N+SD  R KVD FA GF+LLDPVAV +LLV NGIAM+GT+R+SWLN I+
Sbjct: 185 WSSYLASLVK-NDSDYFRIKVDSFAKGFDLLDPVAVAVLLVANGIAMTGTKRTSWLNLIT 243

Query: 239 SIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETK 298
           S+V+ C+IVF+++VGF H KT+NL PF PYG +GV ++AAVVYWSYTGFDMVA MAEET+
Sbjct: 244 SMVTVCIIVFIVVVGFTHSKTSNLVPFFPYGAKGVVQSAAVVYWSYTGFDMVANMAEETE 303

Query: 299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVS 358
           KPSRDIPIGLVGSM MIT VYCLMALALTMMVKYTEID NAAYS+AF QIGM WAKYLV 
Sbjct: 304 KPSRDIPIGLVGSMSMITVVYCLMALALTMMVKYTEIDANAAYSVAFAQIGMKWAKYLVG 363

Query: 359 VCALKGMTTSLLVGSLGQARYTTQIARAHMIPPW 392
           +CALKGMTTSLLVGSLGQARYTTQIAR+HMIPPW
Sbjct: 364 ICALKGMTTSLLVGSLGQARYTTQIARSHMIPPW 397
Permease involved in the transport of the cationic neutral or acidic amino acids.
Arabidopsis thaliana (taxid: 3702)
>sp|O64759|CAAT5_ARATH Cationic amino acid transporter 5 OS=Arabidopsis thaliana GN=CAT5 PE=1 SV=1 Back     alignment and function description
>sp|Q84MA5|CAAT1_ARATH Cationic amino acid transporter 1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LZ20|CAAT6_ARATH Cationic amino acid transporter 6, chloroplastic OS=Arabidopsis thaliana GN=CAT6 PE=2 SV=1 Back     alignment and function description
>sp|Q9SQZ0|CAAT7_ARATH Cationic amino acid transporter 7, chloroplastic OS=Arabidopsis thaliana GN=CAT7 PE=3 SV=1 Back     alignment and function description
>sp|Q797A7|YFNA_BACSU Uncharacterized amino acid permease YfnA OS=Bacillus subtilis (strain 168) GN=yfnA PE=3 SV=1 Back     alignment and function description
>sp|Q8BLQ7|CTR4_MOUSE Cationic amino acid transporter 4 OS=Mus musculus GN=Slc7a4 PE=1 SV=1 Back     alignment and function description
>sp|Q8GYB4|CAAT3_ARATH Cationic amino acid transporter 3, mitochondrial OS=Arabidopsis thaliana GN=CAT3 PE=2 SV=1 Back     alignment and function description
>sp|O43246|CTR4_HUMAN Cationic amino acid transporter 4 OS=Homo sapiens GN=SLC7A4 PE=2 SV=3 Back     alignment and function description
>sp|Q9ASS7|CAAT2_ARATH Cationic amino acid transporter 2, vacuolar OS=Arabidopsis thaliana GN=CAT2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query495
255555517575 cationic amino acid transporter, putativ 0.765 0.659 0.757 1e-173
224061339577 cationic amino acid transporter [Populus 0.747 0.641 0.751 1e-168
225423859571 PREDICTED: uncharacterized amino acid pe 0.771 0.669 0.715 1e-162
297737874 885 unnamed protein product [Vitis vinifera] 0.747 0.418 0.731 1e-161
449515788 630 PREDICTED: cationic amino acid transport 0.757 0.595 0.709 1e-161
449439077594 PREDICTED: cationic amino acid transport 0.757 0.631 0.709 1e-161
356532335592 PREDICTED: uncharacterized amino acid pe 0.749 0.626 0.720 1e-159
15220035590 cationic amino acid transporter 8 [Arabi 0.787 0.661 0.718 1e-159
297844646585 hypothetical protein ARALYDRAFT_471910 [ 0.785 0.664 0.723 1e-159
147860151552 hypothetical protein VITISV_020011 [Viti 0.733 0.657 0.674 1e-148
>gi|255555517|ref|XP_002518795.1| cationic amino acid transporter, putative [Ricinus communis] gi|223542176|gb|EEF43720.1| cationic amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 290/383 (75%), Positives = 340/383 (88%), Gaps = 4/383 (1%)

Query: 10  ETPLRGTSCWHQWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELITLQQ 69
           + P++  S W +W KQ FFPEP+F+N ++Y  AL QTYPRLK+RL SRS++  EL+TLQ+
Sbjct: 5   DQPIK--SYW-RWRKQDFFPEPTFQNLSTYTCALSQTYPRLKDRLLSRSSETNELVTLQK 61

Query: 70  ESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAF 129
           ES+ PL+KCLTWWDL WL FGSVVGSGIFVITGQEA+  +GPAI+LSY  SGLSALLS F
Sbjct: 62  ESENPLRKCLTWWDLMWLSFGSVVGSGIFVITGQEARV-SGPAILLSYAISGLSALLSVF 120

Query: 130 CYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDS 189
           CYTEFAVEIPVAGGSFS+LR+ELGDF+A++AAGNILLE VVGAAGL RSWSSY ASMI++
Sbjct: 121 CYTEFAVEIPVAGGSFSYLRIELGDFIAFLAAGNILLEGVVGAAGLGRSWSSYFASMINT 180

Query: 190 NNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFV 249
            NSD LR ++D F DGFNLLDP+AV++LLV N IAM+GT+R+S LNW+SS+V++C+IVF+
Sbjct: 181 KNSDFLRIRIDSFPDGFNLLDPIAVVVLLVANTIAMTGTKRTSTLNWLSSVVTACIIVFI 240

Query: 250 IIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLV 309
           I+VG VHGK++NL PF P G +GVFEAAAVVYWSYTGFDMVATMAEET+KPSRDIPIGLV
Sbjct: 241 IVVGLVHGKSSNLVPFFPSGPKGVFEAAAVVYWSYTGFDMVATMAEETEKPSRDIPIGLV 300

Query: 310 GSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSL 369
           GSM MIT VYCLMALALT+MVKYTEI+ +AAYS+AF QIGMNWAKYLVS+CALKGMTTSL
Sbjct: 301 GSMSMITVVYCLMALALTIMVKYTEINADAAYSVAFAQIGMNWAKYLVSICALKGMTTSL 360

Query: 370 LVGSLGQARYTTQIARAHMIPPW 392
           LVGSLGQ RYTTQIAR+HMIPPW
Sbjct: 361 LVGSLGQGRYTTQIARSHMIPPW 383

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224061339|ref|XP_002300432.1| cationic amino acid transporter [Populus trichocarpa] gi|222847690|gb|EEE85237.1| cationic amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225423859|ref|XP_002278606.1| PREDICTED: uncharacterized amino acid permease YfnA-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297737874|emb|CBI27075.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449515788|ref|XP_004164930.1| PREDICTED: cationic amino acid transporter 8, vacuolar-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449439077|ref|XP_004137314.1| PREDICTED: cationic amino acid transporter 8, vacuolar-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356532335|ref|XP_003534729.1| PREDICTED: uncharacterized amino acid permease YfnA-like [Glycine max] Back     alignment and taxonomy information
>gi|15220035|ref|NP_173155.1| cationic amino acid transporter 8 [Arabidopsis thaliana] gi|75313454|sp|Q9SHH0.1|CAAT8_ARATH RecName: Full=Cationic amino acid transporter 8, vacuolar gi|5734765|gb|AAD50030.1|AC007651_25 Very similar to amino acid transporter [Arabidopsis thaliana] gi|18176204|gb|AAL60003.1| putative amino acid transporter protein [Arabidopsis thaliana] gi|21436167|gb|AAM51371.1| putative amino acid transporter protein [Arabidopsis thaliana] gi|332191423|gb|AEE29544.1| cationic amino acid transporter 8 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297844646|ref|XP_002890204.1| hypothetical protein ARALYDRAFT_471910 [Arabidopsis lyrata subsp. lyrata] gi|297336046|gb|EFH66463.1| hypothetical protein ARALYDRAFT_471910 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|147860151|emb|CAN78727.1| hypothetical protein VITISV_020011 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query495
TAIR|locus:2020387590 CAT8 "cationic amino acid tran 0.755 0.633 0.672 8.8e-134
TAIR|locus:2044682569 CAT5 "AT2G34960" [Arabidopsis 0.747 0.650 0.568 1.2e-113
TAIR|locus:2127398 594 AAT1 "AT4G21120" [Arabidopsis 0.755 0.629 0.482 1e-93
TAIR|locus:2175488583 CAT6 "AT5G04770" [Arabidopsis 0.735 0.624 0.386 7.4e-66
TAIR|locus:2075745584 CAT7 "cationic amino acid tran 0.731 0.619 0.369 2.3e-64
DICTYBASE|DDB_G0279983 766 ctrB "solute carrier family 7 0.739 0.477 0.333 1.7e-52
TIGR_CMR|BA_0818467 BA_0818 "amino acid permease f 0.654 0.693 0.353 5.8e-50
DICTYBASE|DDB_G0291227562 ctrA "solute carrier family 7 0.696 0.613 0.316 5e-44
DICTYBASE|DDB_G0291201546 ctrC "solute carrier family 7 0.640 0.580 0.307 1.7e-43
FB|FBgn0036984 669 CG13248 [Drosophila melanogast 0.606 0.448 0.332 3.5e-42
TAIR|locus:2020387 CAT8 "cationic amino acid transporter 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1311 (466.6 bits), Expect = 8.8e-134, P = 8.8e-134
 Identities = 253/376 (67%), Positives = 288/376 (76%)

Query:    17 SCWHQWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELITLQQESKQPLQ 76
             S W +W KQ FFPE SF++ ++YKSAL  T PRL +RL SRS+DA EL   ++ES+ P++
Sbjct:    24 SYW-RWRKQDFFPEFSFQSFSTYKSALSATCPRLADRLLSRSSDAYELDAARRESENPMR 82

Query:    77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVXXXXXXXXXXXXXXFCYTEFAV 136
             +CLTWWDL WL FGSVVGSG+FVITGQEA+  AGPA+V               CY EF V
Sbjct:    83 RCLTWWDLLWLSFGSVVGSGVFVITGQEARVGAGPAVVLSYAISGVSALLSVLCYAEFGV 142

Query:   137 EIPVAGGSFSFLRVELGDFVAYIAAGNIXXXXXXXXXXXXRSWSSYLASMIDSNNSDLLR 196
             EIPVAGGSFS+LRVELGDF+A+IAAGNI            RSWSSYLAS++  N+SD  R
Sbjct:   143 EIPVAGGSFSYLRVELGDFIAFIAAGNILLEAMVGAAGLGRSWSSYLASLV-KNDSDYFR 201

Query:   197 FKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWXXXXXXXXXXXXXXXXGFVH 256
              KVD FA GF+LLDPVAV +LLV NGIAM+GT+R+SWLN                 GF H
Sbjct:   202 IKVDSFAKGFDLLDPVAVAVLLVANGIAMTGTKRTSWLNLITSMVTVCIIVFIVVVGFTH 261

Query:   257 GKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMIT 316
              KT+NL PF PYG +GV ++AAVVYWSYTGFDMVA MAEET+KPSRDIPIGLVGSM MIT
Sbjct:   262 SKTSNLVPFFPYGAKGVVQSAAVVYWSYTGFDMVANMAEETEKPSRDIPIGLVGSMSMIT 321

Query:   317 AVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQ 376
              VYCLMALALTMMVKYTEID NAAYS+AF QIGM WAKYLV +CALKGMTTSLLVGSLGQ
Sbjct:   322 VVYCLMALALTMMVKYTEIDANAAYSVAFAQIGMKWAKYLVGICALKGMTTSLLVGSLGQ 381

Query:   377 ARYTTQIARAHMIPPW 392
             ARYTTQIAR+HMIPPW
Sbjct:   382 ARYTTQIARSHMIPPW 397
GO:0003333 "amino acid transmembrane transport" evidence=IEA
GO:0006810 "transport" evidence=IEA
GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA
GO:0015326 "cationic amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0015174 "basic amino acid transmembrane transporter activity" evidence=IGI
GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0009741 "response to brassinosteroid stimulus" evidence=RCA
TAIR|locus:2044682 CAT5 "AT2G34960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127398 AAT1 "AT4G21120" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175488 CAT6 "AT5G04770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075745 CAT7 "cationic amino acid transporter 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0279983 ctrB "solute carrier family 7 member protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0818 BA_0818 "amino acid permease family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291227 ctrA "solute carrier family 7 member protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291201 ctrC "solute carrier family 7 member protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0036984 CG13248 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SHH0CAAT8_ARATHNo assigned EC number0.71820.78780.6610yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
PtrCAT8
cationic amino acid transporter (577 aa)
(Populus trichocarpa)
Predicted Functional Partners:
GH3-8
GH3 family protein (587 aa)
      • 0.510
MYB102
hypothetical protein (118 aa)
      • 0.510

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query495
TIGR00906 557 TIGR00906, 2A0303, cationic amino acid transport p 1e-114
TIGR00909429 TIGR00909, 2A0306, amino acid transporter 4e-61
COG0531466 COG0531, PotE, Amino acid transporters [Amino acid 1e-47
pfam13520425 pfam13520, AA_permease_2, Amino acid permease 6e-34
TIGR00908442 TIGR00908, 2A0305, ethanolamine permease 4e-18
pfam00324473 pfam00324, AA_permease, Amino acid permease 8e-18
PRK11357445 PRK11357, frlA, putative fructoselysine transporte 6e-16
TIGR00911501 TIGR00911, 2A0308, L-type amino acid transporter 2e-12
COG1113462 COG1113, AnsP, Gamma-aminobutyrate permease and re 1e-11
TIGR00905473 TIGR00905, 2A0302, transporter, basic amino acid/p 2e-10
PRK10644445 PRK10644, PRK10644, arginine:agmatin antiporter; P 1e-08
TIGR01773452 TIGR01773, GABAperm, gamma-aminobutyrate permease 2e-06
PRK10238456 PRK10238, PRK10238, aromatic amino acid transporte 2e-06
PRK10249458 PRK10249, PRK10249, phenylalanine transporter; Pro 5e-06
PRK11387471 PRK11387, PRK11387, S-methylmethionine transporter 9e-06
PRK15049499 PRK15049, PRK15049, L-asparagine permease; Provisi 1e-05
PRK10580457 PRK10580, proY, putative proline-specific permease 5e-05
PRK11021410 PRK11021, PRK11021, putative transporter; Provisio 1e-04
TIGR03810468 TIGR03810, arg_ornith_anti, arginine-ornithine ant 1e-04
TIGR03813474 TIGR03813, put_Glu_GABA_T, putative glutamate/gamm 1e-04
TIGR03428475 TIGR03428, ureacarb_perm, permease, urea carboxyla 2e-04
TIGR00913478 TIGR00913, 2A0310, amino acid permease (yeast) 2e-04
COG0833541 COG0833, LysP, Amino acid transporters [Amino acid 2e-04
PRK10836489 PRK10836, PRK10836, lysine transporter; Provisiona 7e-04
PRK10197446 PRK10197, PRK10197, gamma-aminobutyrate transporte 0.001
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 0.002
TIGR00907482 TIGR00907, 2A0304, amino acid permease (GABA perme 0.002
>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease Back     alignment and domain information 
 Score =  349 bits (896), Expect = e-114
 Identities = 130/339 (38%), Positives = 197/339 (58%), Gaps = 9/339 (2%)

Query: 63  ELITLQQESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGL 122
           +++ L    +  +++CLT WDL  L  GS +G+GI+V+TG+ A+  +GPAIVLS+L SGL
Sbjct: 14  KIVDLDSREESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGL 73

Query: 123 SALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSY 182
           +A+LS FCY EF   +P AG ++ +  V +G+  A+I   N++LE V+G A +ARSWS+Y
Sbjct: 74  AAVLSGFCYAEFGARVPKAGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAY 133

Query: 183 LASMIDSNNSDLLRFKVDCFADGFNL-LDPVAVLILLVCNGIAMSGTRRSSWLNWISSIV 241
              +++       R       DG     D  AV ++L+   +   G + S+W+N I + +
Sbjct: 134 FDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAI 193

Query: 242 SSCVIVFVIIVGFVHGKTTNLDP--------FLPYGTEGVFEAAAVVYWSYTGFDMVATM 293
           +  V++FVII GF      N           F+PYG  GV   AA  ++++ GFD +AT 
Sbjct: 194 NILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATT 253

Query: 294 AEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWA 353
            EE K P R IPIG+V S+ +    Y LM+ ALT+M+ Y  +D +A + +AF  +G   A
Sbjct: 254 GEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPA 313

Query: 354 KYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPW 392
           KY+V+V AL GM+TSLL G     R    +AR  ++  W
Sbjct: 314 KYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKW 352

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 557
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter Back     alignment and domain information
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease Back     alignment and domain information
>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease Back     alignment and domain information
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease Back     alignment and domain information
>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional Back     alignment and domain information
>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter Back     alignment and domain information
>gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>gnl|CDD|182613 PRK10644, PRK10644, arginine:agmatin antiporter; Provisional Back     alignment and domain information
>gnl|CDD|233567 TIGR01773, GABAperm, gamma-aminobutyrate permease Back     alignment and domain information
>gnl|CDD|182324 PRK10238, PRK10238, aromatic amino acid transporter; Provisional Back     alignment and domain information
>gnl|CDD|236667 PRK10249, PRK10249, phenylalanine transporter; Provisional Back     alignment and domain information
>gnl|CDD|236904 PRK11387, PRK11387, S-methylmethionine transporter; Provisional Back     alignment and domain information
>gnl|CDD|185009 PRK15049, PRK15049, L-asparagine permease; Provisional Back     alignment and domain information
>gnl|CDD|182566 PRK10580, proY, putative proline-specific permease; Provisional Back     alignment and domain information
>gnl|CDD|236823 PRK11021, PRK11021, putative transporter; Provisional Back     alignment and domain information
>gnl|CDD|163522 TIGR03810, arg_ornith_anti, arginine-ornithine antiporter Back     alignment and domain information
>gnl|CDD|163525 TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>gnl|CDD|132469 TIGR03428, ureacarb_perm, permease, urea carboxylase system Back     alignment and domain information
>gnl|CDD|233181 TIGR00913, 2A0310, amino acid permease (yeast) Back     alignment and domain information
>gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|182767 PRK10836, PRK10836, lysine transporter; Provisional Back     alignment and domain information
>gnl|CDD|182297 PRK10197, PRK10197, gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information
>gnl|CDD|233178 TIGR00907, 2A0304, amino acid permease (GABA permease) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 495
TIGR00906 557 2A0303 cationic amino acid transport permease. 100.0
PRK15049499 L-asparagine permease; Provisional 100.0
PRK11387471 S-methylmethionine transporter; Provisional 100.0
PRK10249458 phenylalanine transporter; Provisional 100.0
PRK10238456 aromatic amino acid transporter; Provisional 100.0
PRK10746461 putative transport protein YifK; Provisional 100.0
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 100.0
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 100.0
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 100.0
PRK10836489 lysine transporter; Provisional 100.0
PRK10655438 potE putrescine transporter; Provisional 100.0
COG0833541 LysP Amino acid transporters [Amino acid transport 100.0
PRK10644445 arginine:agmatin antiporter; Provisional 100.0
PRK10580457 proY putative proline-specific permease; Provision 100.0
TIGR00909429 2A0306 amino acid transporter. 100.0
KOG1286554 consensus Amino acid transporters [Amino acid tran 100.0
TIGR00908442 2A0305 ethanolamine permease. The three genes used 100.0
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 100.0
PRK11357445 frlA putative fructoselysine transporter; Provisio 100.0
TIGR00911501 2A0308 L-type amino acid transporter. 100.0
TIGR00913478 2A0310 amino acid permease (yeast). 100.0
KOG1287479 consensus Amino acid transporters [Amino acid tran 100.0
PRK10197446 gamma-aminobutyrate transporter; Provisional 100.0
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 100.0
PRK11021410 putative transporter; Provisional 100.0
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 100.0
KOG1289550 consensus Amino acid transporters [Amino acid tran 100.0
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 100.0
TIGR00930 953 2a30 K-Cl cotransporter. 100.0
TIGR00907482 2A0304 amino acid permease (GABA permease). 100.0
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 100.0
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 100.0
COG0531466 PotE Amino acid transporters [Amino acid transport 100.0
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 100.0
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 100.0
PRK15238496 inner membrane transporter YjeM; Provisional 100.0
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.96
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.93
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 99.91
KOG1288 945 consensus Amino acid transporters [Amino acid tran 99.91
PHA02764399 hypothetical protein; Provisional 99.86
TIGR00814397 stp serine transporter. The HAAAP family includes 99.82
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 99.81
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 99.8
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.78
PF03845320 Spore_permease: Spore germination protein; InterPr 99.76
PRK13629443 threonine/serine transporter TdcC; Provisional 99.67
COG0814415 SdaC Amino acid permeases [Amino acid transport an 99.67
PRK15132403 tyrosine transporter TyrP; Provisional 99.67
PRK10483414 tryptophan permease; Provisional 99.67
PRK09664415 tryptophan permease TnaB; Provisional 99.66
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 99.3
TIGR00835425 agcS amino acid carrier protein. Members of the AG 99.21
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 99.2
KOG1303437 consensus Amino acid transporters [Amino acid tran 99.19
PTZ00206467 amino acid transporter; Provisional 99.16
PLN03074473 auxin influx permease; Provisional 99.13
KOG1304449 consensus Amino acid transporters [Amino acid tran 99.06
COG3949349 Uncharacterized membrane protein [Function unknown 98.95
PRK11375484 allantoin permease; Provisional 98.94
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 98.63
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 98.52
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.5
COG1457442 CodB Purine-cytosine permease and related proteins 98.49
TIGR00813407 sss transporter, SSS family. have different number 98.44
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.41
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.4
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.32
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 98.27
PRK11017404 codB cytosine permease; Provisional 98.27
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 98.17
PRK15419502 proline:sodium symporter PutP; Provisional 98.16
PRK12488549 acetate permease; Provisional 98.13
COG0733439 Na+-dependent transporters of the SNF family [Gene 98.12
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.1
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 97.99
PRK10484523 putative transporter; Provisional 97.96
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 97.95
PRK15433439 branched-chain amino acid transport system 2 carri 97.92
PF01566358 Nramp: Natural resistance-associated macrophage pr 97.9
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 97.85
PRK09395551 actP acetate permease; Provisional 97.74
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.71
KOG1305411 consensus Amino acid transporter protein [Amino ac 97.7
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 97.63
PRK00701439 manganese transport protein MntH; Reviewed 97.57
COG4147529 DhlC Predicted symporter [General function predict 97.19
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 97.14
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 96.75
PLN00151 852 potassium transporter; Provisional 96.29
KOG2466572 consensus Uridine permease/thiamine transporter/al 96.24
COG1292537 BetT Choline-glycine betaine transporter [Cell env 94.94
KOG4303524 consensus Vesicular inhibitory amino acid transpor 94.1
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 93.89
PLN00150 779 potassium ion transporter family protein; Provisio 92.76
PLN00149 779 potassium transporter; Provisional 92.24
PRK09950506 putative transporter; Provisional 91.97
PRK09928 679 choline transport protein BetT; Provisional 91.32
COG1966 575 CstA Carbon starvation protein, predicted membrane 89.71
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 89.47
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 88.87
PLN00148 785 potassium transporter; Provisional 88.81
TIGR00794 688 kup potassium uptake protein. Proteins of the KUP 87.69
KOG3659629 consensus Sodium-neurotransmitter symporter [Signa 87.63
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 86.24
PRK03356504 L-carnitine/gamma-butyrobetaine antiporter; Provis 83.18
PF02705 534 K_trans: K+ potassium transporter; InterPro: IPR00 82.72
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information 
Probab=100.00  E-value=3e-52  Score=434.95  Aligned_cols=374  Identities=36%  Similarity=0.619  Sum_probs=320.0

Q ss_pred             CccccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHH
Q 011037           72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE  151 (495)
Q Consensus        72 ~~~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~  151 (495)
                      +++++|+++.+|+++++++.++|+|+|..++......+||+.+++|+++++.+++.+++|+|+++++|++||.|.|+++.
T Consensus        23 ~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~  102 (557)
T TIGR00906        23 ESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVT  102 (557)
T ss_pred             ccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHH
Confidence            44689999999999999999999999999998775558999999999999999999999999999999999999999999


Q ss_pred             hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccc-----ccccccCCCCCchhHHHHHHHHHHHHHHhh
Q 011037          152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLR-----FKVDCFADGFNLLDPVAVLILLVCNGIAMS  226 (495)
Q Consensus       152 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  226 (495)
                      +|+.+||++||.+++.|....+..+..++.|+..++.. .-..+.     ...+...   ....+++++++++++.+|.+
T Consensus       103 ~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~-~~~~~~~~~~~~~~~~l~---~~~~~~a~~ii~l~~~ln~~  178 (557)
T TIGR00906       103 VGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNK-QIGQFRRTYFKLNYDGLA---EYPDFFAVCLILLLAVLLSF  178 (557)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccccccccccccCCccc---ccchHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999998887651 111111     0001110   12346777888889999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhheeccccCCCC--------CCCCCChhhHHHHHHHHHHHhhchhHHHHhhhhhc
Q 011037          227 GTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLD--------PFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETK  298 (495)
Q Consensus       227 g~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k  298 (495)
                      |+|..+|++++++.++++.++++++.++.+.+.+|+.        ++.|.++.+++.++...+|+|.|+|.+++++||+|
T Consensus       179 Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~k  258 (557)
T TIGR00906       179 GVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVK  258 (557)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhcc
Confidence            9999999999999999999888888888776666654        56677888999999999999999999999999999


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchhH
Q 011037          299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQAR  378 (495)
Q Consensus       299 ~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR  378 (495)
                      ||+||+||+++.++.+++++|++.+++.....|+++++.++|+..+++..+.++...++.++.+++.+++.++.+++.+|
T Consensus       259 nP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sR  338 (557)
T TIGR00906       259 NPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPR  338 (557)
T ss_pred             CccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998888788999999988888899999999999999999999999999


Q ss_pred             HHHHHHhcCCCchhhhcccCccccch-hHHHHHHHHHHHHHhhcCcCcccccccccchhHHHHHHHHHHHHHHHHhHH
Q 011037          379 YTTQIARAHMIPPWHNSILEFKWKRM-DWLCGNHCTLVFGDFRNGIAPETTCSKTLGSSSGSMVAIIVNCNEFISHRL  455 (495)
Q Consensus       379 ~l~~~ardg~lP~~~~~~~~~~~p~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (495)
                      ++|+|||||.+|++|+|+|||+++|+ +.++..++..++..+..      ......+.+++.++.|.+.++.++..|+
T Consensus       339 il~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~------~~~l~~l~sig~ll~y~lv~~~~l~lR~  410 (557)
T TIGR00906       339 VIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFD------LKALVDLLSIGTLLAYSLVAACVLILRY  410 (557)
T ss_pred             HHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcC------HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999998876655 66666666655544321      2234445678888999888888877774

>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN00151 potassium transporter; Provisional Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>PLN00150 potassium ion transporter family protein; Provisional Back     alignment and domain information
>PLN00149 potassium transporter; Provisional Back     alignment and domain information
>PRK09950 putative transporter; Provisional Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>PLN00148 potassium transporter; Provisional Back     alignment and domain information
>TIGR00794 kup potassium uptake protein Back     alignment and domain information
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms] Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional Back     alignment and domain information
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query495
3gi8_C444 Crystal Structure Of Apct K158a Transporter Bound T 5e-04
3gi9_C444 Crystal Structure Of Apct Transporter Bound To 7f11 6e-04
>pdb|3GI8|C Chain C, Crystal Structure Of Apct K158a Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 Back     alignment and structure 
Iteration: 1

 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 69/346 (19%), Positives = 129/346 (37%), Gaps = 52/346 (15%)
Query: 76  QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVXXXXXXXXXXXXXXFCYTEFA 135
            K L+ W+   +  G ++G+ IF I G  AK  AG  +               + YT+  
Sbjct: 5   NKKLSLWEAVSMAVGVMIGASIFSIFGVGAKI-AGRNLPETFILSGIYALLVAYSYTKLG 63
Query: 136 VEIPVAGGSFSFLRVELGDFVAYIAAGNIXXXXXXXXXXXXRSWSSYLASMIDSNNSDLL 195
            +I    G  +F+   +GD        NI              W SY+ S          
Sbjct: 64  AKIVSNAGPIAFIHKAIGD--------NIITGALSILL-----WMSYVIS---------- 100
Query: 196 RFKVDCFADGF------------NLLDPVAVLILLVCNGIAMS--GTRRSSWLNWXXXXX 241
              +  FA GF            N  +     I +V    A++  G++      +     
Sbjct: 101 ---IALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLV 157
Query: 242 XXXXXXXXXXXGFVHGKTTNLDPFL-PYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKP 300
                      G +    + + P L P    G+  A+A+ + SY GF ++   +E  + P
Sbjct: 158 ALLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENP 217
Query: 301 SRDIPIGLVGSMCMITAVYCLMA------LALTMMVKYTEIDMNAAYSIAFRQIGMNWAK 354
            +++P  +  S+ ++  VY  +A      L +  ++K +E     A ++A +    N   
Sbjct: 218 KKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASE----NALAVAAKPFLGNLGF 273
Query: 355 YLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWHNSILEFK 400
            L+S+ AL  +++++     G A     +A+   +P +    + FK
Sbjct: 274 LLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFK 319
>pdb|3GI9|C Chain C, Crystal Structure Of Apct Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query495
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 1e-94
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 1e-63
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 8e-57
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 Back     alignment and structure
 Score =  293 bits (751), Expect = 1e-94
 Identities = 65/339 (19%), Positives = 145/339 (42%), Gaps = 18/339 (5%)

Query: 75  LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEF 134
             K L+ W+   +  G ++G+ IF I G  AK  AG  +  +++ SG+ ALL A+ YT+ 
Sbjct: 4   KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAK-IAGRNLPETFILSGIYALLVAYSYTKL 62

Query: 135 AVEIPVAGGSFSFLRVELGD-FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSD 193
             +I    G  +F+   +GD  +    +  + +  V+  A  A+ ++ Y   +I++  + 
Sbjct: 63  GAKIVSNAGPIAFIHKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPINT 122

Query: 194 LLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVG 253
                          +    + I+     +   G++      +   +V   ++   I  G
Sbjct: 123 FN-------------IAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAG 169

Query: 254 FVHGKTTNLDP-FLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSM 312
            +    + + P   P    G+  A+A+ + SY GF ++   +E  + P +++P  +  S+
Sbjct: 170 LITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISI 229

Query: 313 CMITAVYCLMALALTMMVKYTEIDMNAAYSI--AFRQIGMNWAKYLVSVCALKGMTTSLL 370
            ++  VY  +A++    +   E+   +  ++  A +    N    L+S+ AL  +++++ 
Sbjct: 230 LIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMN 289

Query: 371 VGSLGQARYTTQIARAHMIPPWHNSILEFKWKRMDWLCG 409
               G A     +A+   +P +    + FK     ++  
Sbjct: 290 ATIYGGANVAYSLAKDGELPEFFERKVWFKSTEGLYITS 328
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query495
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 100.0
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 100.0
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 100.0
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.81
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 98.28
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 98.19
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 97.22
4ain_A539 Glycine betaine transporter BETP; membrane protein 84.65
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=100.00  E-value=1.4e-46  Score=386.03  Aligned_cols=331  Identities=19%  Similarity=0.283  Sum_probs=284.1

Q ss_pred             ccccccCCHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHhHHHHh
Q 011037           73 QPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVEL  152 (495)
Q Consensus        73 ~~l~r~l~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~ael~s~~P~~Gg~y~~~~~~~  152 (495)
                      ++++|+++.++++++.+++++|+|+|..++.. .. +|+.++++|++++++.++.+++++|+++++|++||.|.|+++.+
T Consensus         4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~-~~-~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~   81 (445)
T 3l1l_A            4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANL-AS-TGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCF   81 (445)
T ss_dssp             ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHH-HH-HCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHS
T ss_pred             CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHH-HH-hhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHc
Confidence            35689999999999999999999999998764 44 78889999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhhH
Q 011037          153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS  232 (495)
Q Consensus       153 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~  232 (495)
                      ||.+|++.||.+++++....+......++++...++.            ... +....+++++++++++.+|++|+|..+
T Consensus        82 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~-~~~~~~~~~~~~~~~~~in~~g~~~~~  148 (445)
T 3l1l_A           82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI------------LKD-PWVLTITCVVVLWIFVLLNIVGPKMIT  148 (445)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGG------------GGS-HHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc------------ccc-cHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence            9999999999999999998888888888888765541            111 112457888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhheeccccCCCC-CCCCCC---hhhHHHHHHHHHHHhhchhHHHHhhhhhcCCCCchhHHH
Q 011037          233 WLNWISSIVSSCVIVFVIIVGFVHGKTTNLD-PFLPYG---TEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGL  308 (495)
Q Consensus       233 ~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~~p~ai  308 (495)
                      +++.++..++++.++++++.++...+.++.. ++.+.+   +.+++.++...+|+|.|+|..++++||+|||+|++||++
T Consensus       149 ~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~  228 (445)
T 3l1l_A          149 RVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIAT  228 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHH
Confidence            9999999999999888888877766555443 333333   567889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccc-cccHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcC
Q 011037          309 VGSMCMITAVYCLMALALTMMVKYTEID-MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAH  387 (495)
Q Consensus       309 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ardg  387 (495)
                      ..+..++.++|++..++.....|+++.. .++|+.+++++.++++...++.+..+++.+++.++.+++.+|++++|||||
T Consensus       229 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg  308 (445)
T 3l1l_A          229 IGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDG  308 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999889988764 347999999988888899999999999999999999999999999999999


Q ss_pred             CCchhhhcccCccccchhHHHHHHHHHHHHH
Q 011037          388 MIPPWHNSILEFKWKRMDWLCGNHCTLVFGD  418 (495)
Q Consensus       388 ~lP~~~~~~~~~~~p~~~~i~~~~~~~~~~~  418 (495)
                      .+|++|+|+||++.|.+++++..++..++.+
T Consensus       309 ~lP~~~~~~~~~~~P~~a~~~~~~~~~~~~~  339 (445)
T 3l1l_A          309 LFPPIFARVNKAGTPVAGLIIVGILMTIFQL  339 (445)
T ss_dssp             SSCGGGGCCCTTCCCHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999987777788877776665543
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query495
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 91.72
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.72  E-value=5.8  Score=37.75  Aligned_cols=40  Identities=28%  Similarity=0.406  Sum_probs=29.2

Q ss_pred             CHhHHHHHHhhhhhhhhhhhccHHhHHhccChHHHHHHHH
Q 011037           80 TWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLA  119 (495)
Q Consensus        80 ~~~~~~~l~~~~~ig~g~~~~~~~~~~~~~G~~~~~~~li  119 (495)
                      +..+.+.-.+|..+|.|-+...++....++|.+-++.|++
T Consensus         6 s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~   45 (509)
T d2a65a1           6 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYII   45 (509)
T ss_dssp             CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHH
Confidence            4566777788888999999998888777567664555543